Query 000798
Match_columns 1279
No_of_seqs 278 out of 1321
Neff 4.2
Searched_HMMs 46136
Date Mon Apr 1 23:45:40 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 2E-102 4E-107 883.6 20.6 458 14-485 19-498 (503)
2 PRK00701 manganese transport p 100.0 2.1E-76 4.7E-81 685.1 46.0 404 15-424 25-438 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 4.6E-73 9.9E-78 651.4 47.2 401 14-424 7-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 2.8E-72 6E-77 642.5 41.1 365 21-390 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 5.6E-61 1.2E-65 540.9 35.7 350 43-397 1-358 (358)
6 TIGR00813 sss transporter, SSS 99.0 4.9E-07 1.1E-11 104.9 34.4 123 30-155 11-138 (407)
7 PRK15419 proline:sodium sympor 99.0 2.3E-06 5E-11 102.6 40.9 123 33-155 51-182 (502)
8 TIGR02119 panF sodium/pantothe 99.0 5.3E-06 1.1E-10 98.4 41.8 122 32-153 50-177 (471)
9 TIGR02121 Na_Pro_sym sodium/pr 99.0 1.8E-05 4E-10 94.6 45.0 122 34-155 48-178 (487)
10 PF00474 SSF: Sodium:solute sy 99.0 2.1E-07 4.6E-12 107.4 27.7 120 33-152 17-139 (406)
11 PRK09442 panF sodium/panthothe 99.0 2.4E-05 5.2E-10 93.3 44.9 119 35-156 54-181 (483)
12 PRK12488 acetate permease; Pro 99.0 7.7E-06 1.7E-10 99.4 41.1 126 30-156 75-203 (549)
13 TIGR02711 symport_actP cation/ 98.9 1.8E-05 3.8E-10 96.3 42.8 128 30-158 75-205 (549)
14 PRK09395 actP acetate permease 98.9 8.3E-06 1.8E-10 99.0 39.8 125 30-155 77-204 (551)
15 PF03222 Trp_Tyr_perm: Tryptop 98.9 1.7E-05 3.6E-10 93.0 38.9 341 25-385 4-361 (394)
16 PRK15132 tyrosine transporter 98.7 0.00011 2.5E-09 86.7 37.3 340 25-387 4-360 (403)
17 COG0591 PutP Na+/proline sympo 98.6 0.00031 6.7E-09 84.8 40.3 138 27-164 40-186 (493)
18 TIGR03648 Na_symport_lg probab 98.6 0.00053 1.2E-08 83.6 42.4 121 30-153 40-165 (552)
19 COG1457 CodB Purine-cytosine p 98.6 9.5E-05 2.1E-09 88.0 34.0 328 56-411 53-388 (442)
20 PRK13629 threonine/serine tran 98.6 0.00024 5.2E-09 84.8 35.4 154 27-186 20-187 (443)
21 PRK10484 putative transporter; 98.6 0.0031 6.6E-08 76.6 45.5 109 32-140 48-164 (523)
22 PRK10483 tryptophan permease; 98.5 0.00014 3E-09 86.3 32.5 336 24-387 11-371 (414)
23 PRK15049 L-asparagine permease 98.5 0.004 8.7E-08 75.2 45.1 38 283-321 293-330 (499)
24 PRK11017 codB cytosine permeas 98.5 0.0016 3.5E-08 76.7 40.2 108 56-165 43-151 (404)
25 PF01235 Na_Ala_symp: Sodium:a 98.5 0.0001 2.3E-09 87.2 30.3 284 35-325 30-338 (416)
26 TIGR00814 stp serine transport 98.4 0.00011 2.5E-09 86.4 28.7 124 58-185 33-170 (397)
27 TIGR00837 araaP aromatic amino 98.4 0.00036 7.8E-09 80.2 32.2 72 281-353 255-326 (381)
28 PRK10249 phenylalanine transpo 98.4 0.0057 1.2E-07 72.9 42.5 102 27-136 31-138 (458)
29 PRK09664 tryptophan permease T 98.4 0.00091 2E-08 79.5 34.6 334 25-387 10-372 (415)
30 PRK11387 S-methylmethionine tr 98.3 0.018 3.9E-07 68.8 46.3 39 282-321 278-316 (471)
31 PRK11375 allantoin permease; P 98.3 0.0078 1.7E-07 72.8 40.1 48 55-102 60-107 (484)
32 TIGR00905 2A0302 transporter, 98.3 0.016 3.5E-07 69.2 42.3 38 283-321 272-309 (473)
33 PRK10238 aromatic amino acid t 98.3 0.0069 1.5E-07 72.1 38.0 131 6-141 1-134 (456)
34 PRK10580 proY putative proline 98.2 0.027 5.9E-07 67.0 43.7 68 27-102 19-91 (457)
35 TIGR01773 GABAperm gamma-amino 98.2 0.029 6.3E-07 66.4 43.3 38 63-102 57-94 (452)
36 COG3949 Uncharacterized membra 98.2 0.0022 4.8E-08 73.9 31.0 136 19-162 5-141 (349)
37 TIGR00910 2A0307_GadC glutamat 98.2 0.014 3.1E-07 70.7 39.5 50 51-101 29-83 (507)
38 TIGR02358 thia_cytX probable h 98.2 0.019 4.2E-07 67.5 38.5 58 55-112 29-86 (386)
39 TIGR00930 2a30 K-Cl cotranspor 98.1 0.011 2.4E-07 77.0 39.0 31 294-324 386-416 (953)
40 PRK10746 putative transport pr 98.1 0.042 9.1E-07 65.8 41.1 40 284-324 274-313 (461)
41 PRK11049 D-alanine/D-serine/gl 98.1 0.052 1.1E-06 65.0 43.1 33 289-321 289-321 (469)
42 TIGR00796 livcs branched-chain 98.1 0.012 2.7E-07 69.4 35.2 71 34-105 5-75 (378)
43 COG4147 DhlC Predicted symport 98.1 0.0028 6.2E-08 75.8 29.5 231 73-316 93-366 (529)
44 PF05525 Branch_AA_trans: Bran 98.0 0.019 4.1E-07 68.8 35.5 336 30-387 9-359 (427)
45 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.0051 1.1E-07 73.1 30.7 77 35-112 25-104 (442)
46 PRK11021 putative transporter; 98.0 0.062 1.3E-06 62.9 40.3 36 283-319 250-285 (410)
47 TIGR00835 agcS amino acid carr 98.0 0.01 2.2E-07 71.1 32.7 45 283-328 324-368 (425)
48 TIGR00908 2A0305 ethanolamine 98.0 0.073 1.6E-06 62.9 42.8 38 63-102 52-89 (442)
49 TIGR00907 2A0304 amino acid pe 97.9 0.021 4.5E-07 68.2 34.0 37 283-319 293-329 (482)
50 COG0814 SdaC Amino acid permea 97.9 0.061 1.3E-06 64.1 36.7 155 27-186 12-177 (415)
51 TIGR00909 2A0306 amino acid tr 97.9 0.088 1.9E-06 61.7 37.3 40 284-324 269-308 (429)
52 TIGR03813 put_Glu_GABA_T putat 97.9 0.12 2.7E-06 61.8 41.5 68 28-101 7-79 (474)
53 COG0733 Na+-dependent transpor 97.8 0.03 6.5E-07 67.1 32.3 74 30-106 13-94 (439)
54 COG4145 PanF Na+/panthothenate 97.8 0.086 1.9E-06 62.1 34.8 121 30-153 47-176 (473)
55 PF02133 Transp_cyt_pur: Perme 97.8 0.0017 3.6E-08 76.5 21.9 78 34-112 19-99 (440)
56 TIGR00911 2A0308 L-type amino 97.8 0.16 3.6E-06 61.2 39.3 37 64-102 90-126 (501)
57 TIGR00913 2A0310 amino acid pe 97.8 0.16 3.5E-06 60.7 44.3 35 287-321 282-316 (478)
58 TIGR03810 arg_ornith_anti argi 97.8 0.17 3.6E-06 60.6 43.5 39 282-321 267-305 (468)
59 PRK11357 frlA putative fructos 97.7 0.15 3.3E-06 60.4 36.2 38 62-101 54-91 (445)
60 COG1115 AlsT Na+/alanine sympo 97.7 0.054 1.2E-06 65.1 32.1 279 34-326 73-383 (452)
61 COG1113 AnsP Gamma-aminobutyra 97.7 0.037 8E-07 66.5 30.7 113 51-165 42-158 (462)
62 PRK15433 branched-chain amino 97.6 0.2 4.3E-06 60.5 35.3 80 29-109 13-92 (439)
63 PRK10197 gamma-aminobutyrate t 97.5 0.4 8.6E-06 57.3 42.6 35 289-323 260-294 (446)
64 PRK10644 arginine:agmatin anti 97.5 0.4 8.6E-06 57.0 41.9 38 62-101 51-88 (445)
65 PF13520 AA_permease_2: Amino 97.5 0.38 8.3E-06 56.1 38.4 43 282-324 260-302 (426)
66 PRK10655 potE putrescine trans 97.3 0.71 1.5E-05 54.6 43.1 33 67-101 54-86 (438)
67 COG0531 PotE Amino acid transp 97.0 1.1 2.3E-05 52.6 38.4 34 285-319 278-311 (466)
68 KOG1289 Amino acid transporter 97.0 0.2 4.2E-06 61.7 25.4 163 252-418 295-476 (550)
69 PRK10836 lysine transporter; P 96.8 2.1 4.6E-05 51.8 41.4 37 284-321 287-323 (489)
70 PLN03074 auxin influx permease 96.7 1.6 3.4E-05 53.4 30.4 62 320-383 336-398 (473)
71 COG1114 BrnQ Branched-chain am 96.6 2.6 5.6E-05 50.9 34.7 74 29-103 10-83 (431)
72 TIGR00912 2A0309 spore germina 96.6 2.2 4.8E-05 49.2 34.0 105 61-173 40-151 (359)
73 TIGR00906 2A0303 cationic amin 96.5 3.6 7.8E-05 51.2 43.5 37 284-321 304-340 (557)
74 TIGR03428 ureacarb_perm permea 96.4 3.3 7.1E-05 50.0 40.5 43 57-101 53-95 (475)
75 PRK15238 inner membrane transp 96.4 3.7 7.9E-05 49.9 39.5 68 30-101 15-87 (496)
76 PF00209 SNF: Sodium:neurotran 96.4 0.77 1.7E-05 56.2 25.0 59 37-95 18-78 (523)
77 PRK09928 choline transport pro 96.2 3.9 8.6E-05 52.2 29.7 86 292-385 406-497 (679)
78 PF00324 AA_permease: Amino ac 96.1 0.065 1.4E-06 64.0 13.8 29 289-317 283-311 (478)
79 PRK10435 cadB lysine/cadaverin 96.0 4.9 0.00011 48.0 43.7 37 62-101 48-84 (435)
80 COG1953 FUI1 Cytosine/uracil/t 96.0 6.2 0.00014 48.7 29.7 60 40-99 54-118 (497)
81 COG1966 CstA Carbon starvation 95.8 8 0.00017 48.3 32.2 53 48-101 75-131 (575)
82 PF02554 CstA: Carbon starvati 95.7 0.5 1.1E-05 56.0 18.1 58 43-102 71-132 (376)
83 KOG1286 Amino acid transporter 95.4 0.94 2E-05 56.4 20.2 36 289-324 312-350 (554)
84 PF02028 BCCT: BCCT family tra 95.0 13 0.00028 46.1 30.1 87 292-385 389-477 (485)
85 PRK15015 carbon starvation pro 94.9 17 0.00036 46.6 36.4 51 50-101 108-162 (701)
86 KOG1303 Amino acid transporter 94.2 19 0.0004 44.2 30.9 64 320-385 330-398 (437)
87 PF03845 Spore_permease: Spore 94.0 14 0.0003 42.3 32.8 116 61-184 38-160 (320)
88 KOG3660 Sodium-neurotransmitte 93.8 22 0.00047 45.5 26.5 70 23-95 36-111 (629)
89 PRK03356 L-carnitine/gamma-but 93.1 26 0.00057 43.7 25.2 87 292-386 402-494 (504)
90 COG0833 LysP Amino acid transp 93.1 31 0.00068 43.3 27.8 137 27-176 60-202 (541)
91 KOG1288 Amino acid transporter 92.5 5.1 0.00011 51.0 17.9 45 278-325 358-402 (945)
92 KOG2349 Na+:iodide/myo-inosito 92.1 2.5 5.3E-05 53.1 14.9 335 35-383 58-428 (585)
93 COG1292 BetT Choline-glycine b 91.7 45 0.00097 41.9 29.3 82 297-385 406-490 (537)
94 TIGR00844 c_cpa1 na(+)/h(+) an 88.9 93 0.002 41.1 27.0 22 204-225 132-153 (810)
95 KOG1305 Amino acid transporter 87.7 76 0.0016 38.7 25.4 52 45-98 30-81 (411)
96 KOG1304 Amino acid transporter 86.5 94 0.002 38.5 30.7 72 336-409 364-436 (449)
97 TIGR00842 bcct choline/carniti 84.0 1.2E+02 0.0026 37.6 28.2 87 292-385 353-445 (453)
98 PRK13108 prolipoprotein diacyl 83.0 90 0.002 38.8 19.8 20 638-657 419-438 (460)
99 COG3949 Uncharacterized membra 82.3 12 0.00027 44.3 11.7 88 284-386 71-159 (349)
100 PF01490 Aa_trans: Transmembra 80.4 0.075 1.6E-06 61.2 -6.8 52 335-388 323-374 (409)
101 PTZ00206 amino acid transporte 80.4 1.5E+02 0.0033 36.4 33.9 49 332-383 376-424 (467)
102 KOG3659 Sodium-neurotransmitte 79.0 1.3E+02 0.0027 38.7 19.2 148 253-403 374-543 (629)
103 PRK09950 putative transporter; 77.5 2.1E+02 0.0045 36.2 34.6 87 292-385 399-491 (506)
104 COG1294 AppB Cytochrome bd-typ 73.6 2.1E+02 0.0046 34.5 24.2 20 251-270 127-146 (346)
105 PF12794 MscS_TM: Mechanosensi 71.4 82 0.0018 37.3 14.6 17 338-354 131-147 (340)
106 PRK09824 PTS system beta-gluco 70.1 1.2E+02 0.0025 39.2 16.4 94 128-224 205-312 (627)
107 PRK00293 dipZ thiol:disulfide 68.6 3.3E+02 0.0072 34.7 21.4 57 360-422 327-383 (571)
108 PF05977 MFS_3: Transmembrane 67.3 3.4E+02 0.0073 34.2 35.0 38 101-139 14-51 (524)
109 TIGR02865 spore_II_E stage II 66.8 3.4E+02 0.0073 35.9 19.9 19 365-384 267-285 (764)
110 COG1283 NptA Na+/phosphate sym 64.8 3.9E+02 0.0085 34.1 24.2 41 285-325 167-207 (533)
111 KOG2348 Urea transporter [Amin 61.3 27 0.00057 43.2 8.0 60 39-98 68-130 (667)
112 PF05313 Pox_P21: Poxvirus P21 60.2 71 0.0015 35.3 10.1 54 357-413 79-133 (189)
113 PRK03612 spermidine synthase; 58.0 2.8E+02 0.006 34.9 16.3 47 47-93 25-72 (521)
114 PF02990 EMP70: Endomembrane p 57.5 1.8E+02 0.004 36.4 14.7 23 401-423 425-447 (521)
115 PF06738 DUF1212: Protein of u 56.1 72 0.0016 34.1 9.6 9 124-132 116-124 (193)
116 COG0659 SUL1 Sulfate permease 55.6 5.5E+02 0.012 32.8 27.6 91 21-123 52-155 (554)
117 PTZ00243 ABC transporter; Prov 55.5 8.5E+02 0.018 35.0 25.5 22 72-93 306-327 (1560)
118 TIGR01995 PTS-II-ABC-beta PTS 55.4 5.8E+02 0.012 33.0 19.3 10 202-211 281-290 (610)
119 PRK10263 DNA translocase FtsK; 52.6 42 0.00091 46.1 8.5 9 128-136 78-86 (1355)
120 TIGR00844 c_cpa1 na(+)/h(+) an 51.2 7.7E+02 0.017 33.2 19.5 26 54-79 205-230 (810)
121 PLN00149 potassium transporter 50.2 7.8E+02 0.017 33.0 22.3 16 708-723 713-728 (779)
122 KOG2234 Predicted UDP-galactos 49.4 2.9E+02 0.0063 33.4 13.7 72 300-376 186-270 (345)
123 KOG1278 Endosomal membrane pro 47.6 3.4E+02 0.0073 34.9 14.3 23 400-422 489-511 (628)
124 PLN00151 potassium transporter 47.5 8.7E+02 0.019 32.8 22.4 16 708-723 786-801 (852)
125 PF01528 Herpes_glycop: Herpes 46.4 6.3E+02 0.014 31.0 16.1 31 364-394 238-268 (374)
126 TIGR00832 acr3 arsenical-resis 45.6 5.6E+02 0.012 30.4 15.4 27 362-388 175-201 (328)
127 COG0814 SdaC Amino acid permea 45.3 5.1E+02 0.011 31.6 15.4 32 280-312 73-104 (415)
128 TIGR02840 spore_YtaF putative 43.7 3.5E+02 0.0075 30.1 12.6 28 129-156 152-179 (206)
129 COG1283 NptA Na+/phosphate sym 43.7 3.4E+02 0.0074 34.6 13.8 46 283-328 38-83 (533)
130 PF14362 DUF4407: Domain of un 43.6 1E+02 0.0023 35.4 9.0 30 120-149 32-61 (301)
131 PRK09796 PTS system cellobiose 42.7 7.9E+02 0.017 30.9 17.4 94 128-224 207-314 (472)
132 PRK02983 lysS lysyl-tRNA synth 42.6 4.6E+02 0.01 36.2 15.8 50 368-418 114-163 (1094)
133 PLN00150 potassium ion transpo 42.3 1E+03 0.022 32.0 24.6 16 708-723 713-728 (779)
134 COG1271 CydA Cytochrome bd-typ 41.8 8.2E+02 0.018 30.8 32.1 34 240-273 124-157 (457)
135 PF05297 Herpes_LMP1: Herpesvi 41.2 8.9 0.00019 44.4 0.0 50 139-188 117-166 (381)
136 COG3696 Putative silver efflux 41.1 5.7E+02 0.012 34.8 15.5 74 133-220 340-415 (1027)
137 COG3610 Uncharacterized conser 40.8 1.5E+02 0.0033 31.9 8.9 79 122-204 17-102 (156)
138 PRK11469 hypothetical protein; 40.5 5.4E+02 0.012 28.4 13.3 28 129-156 129-156 (188)
139 PRK11281 hypothetical protein; 39.8 1E+03 0.022 33.2 18.2 13 340-352 627-639 (1113)
140 PF02705 K_trans: K+ potassium 39.0 9.6E+02 0.021 30.8 24.2 101 57-165 43-160 (534)
141 COG2966 Uncharacterized conser 38.8 1.4E+02 0.0031 34.3 8.9 31 124-155 138-168 (250)
142 TIGR00794 kup potassium uptake 38.6 1.1E+03 0.023 31.3 20.6 28 137-165 169-196 (688)
143 PRK11598 putative metal depend 37.9 4.1E+02 0.0089 33.9 13.5 22 295-316 75-96 (545)
144 PF06570 DUF1129: Protein of u 37.4 6E+02 0.013 28.0 13.5 49 371-422 121-170 (206)
145 COG1296 AzlC Predicted branche 37.4 5.3E+02 0.011 29.7 13.0 27 52-78 39-66 (238)
146 PRK10929 putative mechanosensi 37.2 1.3E+03 0.028 32.2 18.5 14 340-353 606-619 (1109)
147 PRK13743 conjugal transfer pro 37.2 2.5E+02 0.0055 29.7 9.4 40 274-315 74-113 (141)
148 TIGR02119 panF sodium/pantothe 36.4 7.6E+02 0.016 30.2 15.1 47 281-327 109-155 (471)
149 TIGR03732 lanti_perm_MutE lant 36.1 4.2E+02 0.0091 29.8 12.0 59 336-394 14-73 (241)
150 PF07907 YibE_F: YibE/F-like p 35.0 7.5E+02 0.016 28.4 24.2 24 129-152 46-70 (244)
151 TIGR00927 2A1904 K+-dependent 35.0 1.1E+02 0.0024 41.2 8.0 15 367-381 1011-1025(1096)
152 COG1230 CzcD Co/Zn/Cd efflux s 34.7 6.3E+02 0.014 30.0 13.4 55 154-213 84-138 (296)
153 PF02535 Zip: ZIP Zinc transpo 34.1 6.2E+02 0.013 28.7 13.2 33 43-75 185-217 (317)
154 PF03784 Cyclotide: Cyclotide 33.4 7.7 0.00017 31.2 -1.4 11 1227-1238 2-12 (30)
155 PF10810 DUF2545: Protein of u 33.3 2.2E+02 0.0047 27.4 7.5 30 101-130 3-34 (80)
156 PRK09509 fieF ferrous iron eff 32.1 7.4E+02 0.016 28.7 13.4 53 371-423 50-103 (299)
157 COG4232 Thiol:disulfide interc 31.8 1.3E+03 0.027 30.1 20.0 56 357-418 325-380 (569)
158 PRK12488 acetate permease; Pro 31.6 1.2E+03 0.025 29.6 16.5 59 264-327 120-178 (549)
159 PLN00148 potassium transporter 31.2 1.5E+03 0.032 30.6 18.3 15 708-722 719-733 (785)
160 PRK09509 fieF ferrous iron eff 31.1 8.8E+02 0.019 28.1 15.9 18 154-171 73-90 (299)
161 PF03222 Trp_Tyr_perm: Tryptop 31.0 1E+03 0.022 28.8 19.5 42 284-326 70-111 (394)
162 TIGR02711 symport_actP cation/ 30.6 1.2E+03 0.026 29.5 21.9 61 263-328 119-179 (549)
163 KOG2466 Uridine permease/thiam 30.5 1.3E+03 0.028 29.7 17.7 130 45-178 80-230 (572)
164 TIGR02916 PEP_his_kin putative 29.9 1.3E+03 0.028 29.6 20.0 18 201-218 193-210 (679)
165 COG4858 Uncharacterized membra 29.8 8.6E+02 0.019 27.5 13.2 83 367-462 131-213 (226)
166 COG2271 UhpC Sugar phosphate p 29.8 5.7E+02 0.012 32.0 12.4 25 53-82 249-273 (448)
167 KOG1287 Amino acid transporter 29.5 1.3E+03 0.028 29.4 28.1 60 357-423 355-415 (479)
168 PRK15433 branched-chain amino 29.5 1.2E+03 0.026 29.2 15.6 62 86-147 267-328 (439)
169 PRK09917 hypothetical protein; 29.2 4.6E+02 0.01 28.2 10.3 79 122-203 21-104 (157)
170 PRK11026 ftsX cell division AB 28.5 1E+03 0.022 28.0 14.6 62 42-104 166-228 (309)
171 COG2194 Predicted membrane-ass 27.9 9.3E+02 0.02 31.0 14.2 16 21-36 11-26 (555)
172 TIGR03648 Na_symport_lg probab 27.7 1.3E+03 0.029 29.0 16.0 48 280-327 96-143 (552)
173 KOG0569 Permease of the major 27.1 1.4E+03 0.03 29.0 15.9 27 357-383 114-140 (485)
174 PF11833 DUF3353: Protein of u 26.9 3.5E+02 0.0076 30.1 9.2 41 371-418 119-159 (194)
175 TIGR00930 2a30 K-Cl cotranspor 26.8 1.8E+03 0.039 30.3 21.4 14 447-460 321-334 (953)
176 PRK03557 zinc transporter ZitB 26.7 1.1E+03 0.024 27.7 15.7 162 102-269 21-199 (312)
177 PRK09598 lipid A phosphoethano 26.3 6.3E+02 0.014 32.0 12.4 18 298-315 78-95 (522)
178 PRK09543 znuB high-affinity zi 26.2 1E+03 0.022 27.3 15.2 45 118-165 43-88 (261)
179 KOG1278 Endosomal membrane pro 25.7 1.6E+03 0.034 29.3 17.4 152 22-215 340-497 (628)
180 PRK10745 trkD potassium transp 25.5 1.3E+03 0.029 30.1 14.9 27 137-164 144-170 (622)
181 PRK11463 fxsA phage T7 F exclu 25.4 5.7E+02 0.012 27.3 10.1 49 42-92 15-63 (148)
182 PF11168 DUF2955: Protein of u 25.2 2E+02 0.0044 30.0 6.7 88 126-216 16-111 (140)
183 COG4325 Predicted membrane pro 24.6 5.1E+02 0.011 32.0 10.5 64 154-221 112-183 (464)
184 PRK09586 murP PTS system N-ace 24.1 1.2E+03 0.025 29.5 13.9 92 128-224 220-322 (476)
185 PRK10263 DNA translocase FtsK; 24.1 8.5E+02 0.018 34.5 13.5 13 49-61 67-79 (1355)
186 KOG1397 Ca2+/H+ antiporter VCX 24.0 7.3E+02 0.016 30.8 11.6 53 49-105 95-147 (441)
187 TIGR00837 araaP aromatic amino 24.0 1.2E+03 0.026 27.3 17.6 34 281-315 61-94 (381)
188 TIGR02854 spore_II_GA sigma-E 23.9 7.1E+02 0.015 29.1 11.5 16 62-77 9-25 (288)
189 PF01654 Bac_Ubq_Cox: Bacteria 23.8 1.5E+03 0.032 28.3 30.1 39 391-430 348-386 (436)
190 PRK12363 phosphoglycerol trans 23.5 3.6E+02 0.0077 35.5 9.7 45 371-425 5-49 (703)
191 PF13722 DUF4161: C-terminal d 23.3 8.4E+02 0.018 25.5 10.6 27 300-326 13-39 (127)
192 PF12821 DUF3815: Protein of u 23.2 3.7E+02 0.0081 27.5 8.1 79 122-203 10-93 (130)
193 PF05525 Branch_AA_trans: Bran 23.1 1.5E+03 0.033 28.2 15.8 62 86-147 263-325 (427)
194 PRK11021 putative transporter; 22.9 1.3E+03 0.029 27.4 15.1 37 64-102 45-81 (410)
195 PF04224 DUF417: Protein of un 22.8 2.4E+02 0.0052 31.1 6.9 44 165-212 119-164 (175)
196 COG1457 CodB Purine-cytosine p 22.8 1.6E+03 0.034 28.3 16.0 77 56-133 227-306 (442)
197 PF08019 DUF1705: Domain of un 22.6 5.5E+02 0.012 27.1 9.4 22 295-316 20-41 (156)
198 COG0385 Predicted Na+-dependen 22.5 7.8E+02 0.017 29.7 11.4 44 343-386 142-185 (319)
199 COG2076 EmrE Membrane transpor 22.4 6.7E+02 0.014 25.8 9.4 27 132-158 61-87 (106)
200 KOG1287 Amino acid transporter 22.2 1.7E+03 0.037 28.4 16.2 54 284-337 83-138 (479)
201 COG1114 BrnQ Branched-chain am 22.1 1.6E+03 0.035 28.2 14.1 72 86-161 265-337 (431)
202 COG4858 Uncharacterized membra 21.7 4.5E+02 0.0098 29.6 8.6 18 203-220 196-213 (226)
203 PRK09442 panF sodium/panthothe 21.7 1.6E+03 0.034 27.7 17.2 48 281-328 110-157 (483)
204 TIGR00806 rfc RFC reduced fola 21.3 1.8E+03 0.039 28.3 30.5 21 447-467 430-450 (511)
205 PRK11375 allantoin permease; P 21.1 1.3E+03 0.029 28.7 13.7 24 106-129 317-341 (484)
206 PRK09395 actP acetate permease 20.6 1.8E+03 0.038 28.0 17.2 47 282-328 135-181 (551)
207 TIGR01271 CFTR_protein cystic 20.5 2.7E+03 0.058 30.1 24.4 18 1129-1146 1379-1398(1490)
208 PRK00816 rnfD electron transpo 20.4 5.3E+02 0.011 31.3 9.7 85 21-144 21-105 (350)
209 PLN03130 ABC transporter C fam 20.4 2.8E+03 0.061 30.2 21.8 20 1127-1146 1398-1419(1622)
210 PF01741 MscL: Large-conductan 20.2 1.4E+02 0.003 31.2 4.3 54 442-501 70-123 (128)
211 TIGR00813 sss transporter, SSS 20.2 1.5E+03 0.033 27.0 17.2 47 282-328 69-115 (407)
212 COG5522 Predicted integral mem 20.2 9.2E+02 0.02 27.7 10.6 66 407-473 162-232 (236)
213 PF03619 Solute_trans_a: Organ 20.1 6.9E+02 0.015 28.7 10.2 50 301-351 4-53 (274)
214 PF04123 DUF373: Domain of unk 20.0 9.9E+02 0.022 29.0 11.8 15 310-324 188-202 (344)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-102 Score=883.58 Aligned_cols=458 Identities=30% Similarity=0.443 Sum_probs=412.8
Q ss_pred CCCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000798 14 NYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 14 ~~~~~~~rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~ 93 (1279)
+.++..|||+|+|+|||||||+||+||||++||+||||+|||+|||++++++++++++|++|||||+||||||||.||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 000798 94 YDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 94 YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLs 173 (1279)
||||+++.||+++|+|+|++||+||||+|+|+|+||++|+|+||+||++|+|+|+++.+| |.||+|.++.+++.+|++|
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~ky-GiRklE~~~~~Li~~mai~ 177 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKY-GIRKLEAFFAFLIVTMAIS 177 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred HHHHHHhhCCChhhhc-cccccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchh---hhhhHHHHH
Q 000798 174 YVLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGA---LCHDHFFAI 246 (1279)
Q Consensus 174 FVi~l~vs~Pd~~eVl-~GLVP~lp---~~sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~~~~a---~~~D~~~~i 246 (1279)
|.+++..++|+.++++ +|++|+++ ++.+++++|++||+|||||+|+||++||+|+.+++.+++. .++....+
T Consensus 178 F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies- 256 (503)
T KOG1291|consen 178 FGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES- 256 (503)
T ss_pred HheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH-
Confidence 9999999999988765 66679987 6899999999999999999999999999999887654322 22222222
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhccCC-cccc-------------CHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHH
Q 000798 247 LCIFSGIYMVNYVLMNSA-ANLFYSTG-LVLL-------------TFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAV 311 (1279)
Q Consensus 247 l~i~lgsfLINlaVViVa-AavLygtG-~~V~-------------tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTI 311 (1279)
.+.+.++|.||.+++.++ |+.||++- ..+. +...+..+|...+| +++.++|++|||+|||||||
T Consensus 257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g-~~a~~Ifai~lLasGQSsti 335 (503)
T KOG1291|consen 257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFG-PAALYIFAIGLLASGQSSTI 335 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHCCCcccc
Confidence 223457899999999999 99988753 3322 24445667888887 99999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000798 312 NWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMG 391 (1279)
Q Consensus 312 TgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMG 391 (1279)
||||+||+|||||++|++++|.||++||++||+|+++|+++.|.+++.+|++++||+++++|||+++|+++|+++|+|||
T Consensus 336 tgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~ 415 (503)
T KOG1291|consen 336 TGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMG 415 (503)
T ss_pred eeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000798 392 VHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASS 471 (1279)
Q Consensus 392 efrNs~~~nILawii~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s~~~ 471 (1279)
.|+|+...+.++|.+.++++.+|+||+++.+.. .....+..+.++...+++|++|++||+.+|++....
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-----------~~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~ 484 (503)
T KOG1291|consen 416 VFKNGLVTEELTWTVAALVLGINGYFLVSFFWS-----------LVGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSI 484 (503)
T ss_pred hhccCccceeeeehheeeeeeeeeEEeeeehhh-----------hcCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999866531 112122345566678899999999999999999999
Q ss_pred cCCCCCCccccccc
Q 000798 472 RNNAPDWSWEFQRA 485 (1279)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (1279)
..+++.|+++.++.
T Consensus 485 ~~~~~~~~~~~~~~ 498 (503)
T KOG1291|consen 485 ISLAMSSSMHAQNA 498 (503)
T ss_pred hhhhcccchhcccc
Confidence 99999999999885
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=2.1e-76 Score=685.14 Aligned_cols=404 Identities=28% Similarity=0.490 Sum_probs=369.7
Q ss_pred CCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhc
Q 000798 15 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 94 (1279)
Q Consensus 15 ~~~~~~rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~Y 94 (1279)
.++..|+++++++|||||++++|+|||+++|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|.||++|
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Q 000798 95 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 174 (1279)
Q Consensus 95 gK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsF 174 (1279)
||++++++|+.+++++++++++|++|+|+|++++||+|++++++++++++++++++. ..++|++|+++.+++++|.+||
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~-~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ-RRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776543 3567999999999999999999
Q ss_pred HHHHHhhCCChhhhccccccc---cCC-ChHHHHHHHhcccchhHHHHHhHHhhhhcccccc--c---cchhhhhhHHHH
Q 000798 175 VLGVLISQPEIPLSVNGMLTK---FSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVN--I---SKGALCHDHFFA 245 (1279)
Q Consensus 175 Vi~l~vs~Pd~~eVl~GLVP~---lp~-~sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~--~---~~~a~~~D~~~~ 245 (1279)
++.++.++|||+++++|++|+ +|. +.++.++|++||||||||+|+||+++++|+.+.+ . ..+..+.|...+
T Consensus 184 ~~~~~~~~P~~~~v~~Gl~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~g 263 (439)
T PRK00701 184 IVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAIA 263 (439)
T ss_pred HHHHheeCCCHHHHhcccCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999 874 5678899999999999999999999988753311 1 122235566665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 246 ILCIFSGIYMVNYVLMNSAANLFYSTGLV-LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 246 il~i~lgsfLINlaVViVaAavLygtG~~-V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
+ ++++++|.++++++|++||++|.. +.+..|++++|+|.+| ++++++|++|||+||++|++++++++++++++|
T Consensus 264 ~----~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G-~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~ 338 (439)
T PRK00701 264 L----TIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLG-AAAATLFGIALLASGLSSTVVGTLAGQIVMEGF 338 (439)
T ss_pred H----HHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHh-HHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 4 457899999999999999998875 8899999999999998 899999999999999999999999999999999
Q ss_pred hCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHH
Q 000798 325 LRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVL 404 (1279)
Q Consensus 325 L~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILaw 404 (1279)
++++.++|.|++++++++++|+++++++.+..+|+++++++||+++++|||+++|+++++|+|++||+|||+++.|+++|
T Consensus 339 l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~ 418 (439)
T PRK00701 339 LRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAW 418 (439)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHH
Confidence 99998999999999999999999987765434699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 000798 405 ITFMGMLGLKLIFMVEMIFG 424 (1279)
Q Consensus 405 ii~llIi~LNIyfVi~~lfg 424 (1279)
+++++++++|+++++..++|
T Consensus 419 ~~~~~i~~l~~~~~~~~~~~ 438 (439)
T PRK00701 419 IIAVLIVALNIYLLYQTFTG 438 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988764
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.6e-73 Score=651.36 Aligned_cols=401 Identities=28% Similarity=0.433 Sum_probs=368.4
Q ss_pred CCCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000798 14 NYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 14 ~~~~~~~rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~ 93 (1279)
+.....|+++++++||||||++||+|||||+|++|+|++|||+|+|++++++++++++|++++|||+||||+|+|.||++
T Consensus 7 ~~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~ 86 (416)
T COG1914 7 KKKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRER 86 (416)
T ss_pred cchHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 000798 94 YDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 94 YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLs 173 (1279)
|++++++++|+.++++++++|++|++|+|+|++++||+|+.++++++++++++++++. ++|++|+++..++.++.+|
T Consensus 87 y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~---~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK---GYRLLERVVLILGLVLVIL 163 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999888754 6899999999999999999
Q ss_pred HHHHHHhhCCChhhhccc-cccccCC-ChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhhh---hhHHHHHHH
Q 000798 174 YVLGVLISQPEIPLSVNG-MLTKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALC---HDHFFAILC 248 (1279)
Q Consensus 174 FVi~l~vs~Pd~~eVl~G-LVP~lp~-~sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~~~~a~~---~D~~~~il~ 248 (1279)
|++++++.+|+|++++++ ++|+.+. +.++.++|++|||||||++|+||++||++...++..+++.+ .|.++++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i~~-- 241 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDTIIGM-- 241 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHHHHHH--
Confidence 999999999999999999 7798877 88999999999999999999999999973322222223333 3554443
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCc--cccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000798 249 IFSGIYMVNYVLMNSAANLFYSTGL--VLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 249 i~lgsfLINlaVViVaAavLygtG~--~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
+..+++|.++++++|..+|.++. .+.+..+++..+.+.+| +.+..+|+++++++|++|+++++|++|++|+||++
T Consensus 242 --~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G-~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 242 --IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLG-SAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred --HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhh-hHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 35689999999999999998774 46778889999999998 89999999999999999999999999999999999
Q ss_pred CCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHH
Q 000798 327 LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLIT 406 (1279)
Q Consensus 327 lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii 406 (1279)
++.++|.|++++|+++++|++++.+++| ++.++++++|+++++++||+++|++.++++|++||+|+|++|.++++|++
T Consensus 319 ~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v 396 (416)
T COG1914 319 WRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIV 396 (416)
T ss_pred ccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHH
Confidence 9999999999999999999988888888 69999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 000798 407 FMGMLGLKLIFMVEMIFG 424 (1279)
Q Consensus 407 ~llIi~LNIyfVi~~lfg 424 (1279)
+++++.+|+++++.++++
T Consensus 397 ~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 397 VILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999988763
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=2.8e-72 Score=642.45 Aligned_cols=365 Identities=28% Similarity=0.475 Sum_probs=329.1
Q ss_pred HHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000798 21 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 21 rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~ 100 (1279)
|++|+++|||++++++|+|||||+|++|+||+|||+|||++++++++++++|+|++|+|+||||+|+|.||++|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 101 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 180 (1279)
Q Consensus 101 ~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~v 180 (1279)
.+|+++++++++++++|++|+|+|+|++||+|+|++++++++++++++++.+ .++|++|+++.+++++|.+||++++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~-~~yr~~E~~~~~lv~~m~~~f~~~~~~ 159 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDK-PGLRILEAFVALLVTIVAICFAYELFY 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHh-CCceeHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999999998888776655433 478999999999999999999999999
Q ss_pred hCCChhhhccc-cccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccch-------------------h
Q 000798 181 SQPEIPLSVNG-MLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKG-------------------A 237 (1279)
Q Consensus 181 s~Pd~~eVl~G-LVP~lp---~~sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~~~~-------------------a 237 (1279)
++|||+++++| ++|++| .++++.++|++||||||||+|+||++||+|+++++...+ .
T Consensus 160 ~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (390)
T TIGR01197 160 AKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSF 239 (390)
T ss_pred eCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHH
Confidence 99999999877 569765 467888999999999999999999999999865433211 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C-ccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000798 238 LCHDHFFAILCIFSGIYMVNYVLMNSAANLFYST-G-LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 238 ~~~D~~~~il~i~lgsfLINlaVViVaAavLygt-G-~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTl 315 (1279)
.+.|...++ +.+.+++|.++++++|++||++ + .+..+..+++++|+|.+| ++|+++|++|||+|||+|++|+++
T Consensus 240 ~~~d~~~~i---~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G-~~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 240 SINEFVIAL---FTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFS-PAAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhh-HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 123444332 2345668999999999999975 5 567789999999999998 799999999999999999999999
Q ss_pred HHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000798 316 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM 390 (1279)
Q Consensus 316 AGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IM 390 (1279)
+||++|+||++++.++|.|++++|+++++|+++++++.|..++.++++++||+++++|||+++|+++++|+|++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999999887765557999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=5.6e-61 Score=540.87 Aligned_cols=350 Identities=28% Similarity=0.430 Sum_probs=321.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 43 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIA 122 (1279)
Q Consensus 43 IaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiA 122 (1279)
|+|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|||++.+++|+.++++.++++++|++|+|
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc-cccCC-Ch
Q 000798 123 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGML-TKFSG-DS 200 (1279)
Q Consensus 123 IALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLV-P~lp~-~s 200 (1279)
+|+++++|+|.+++++++++++++++++. ..++|++|+++.+++++|.+||++.+++++|||+++++|++ |++|. ++
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~-~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~ 159 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLS-SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGS 159 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhH
Confidence 99999999999999999999999998843 23569999999999999999999999999999999999998 99998 89
Q ss_pred HHHHHHHhcccchhHHHHHhHHhhhhccccccc-----cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 000798 201 AFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNI-----SKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL 275 (1279)
Q Consensus 201 l~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~-----~~~a~~~D~~~~il~i~lgsfLINlaVViVaAavLygtG~~V 275 (1279)
++.++|++|||+|||++|+||+++++|+++.+. ..+..+.|..+++ ++++++|+++++++|.++|+.+..+
T Consensus 160 ~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~----~~~~li~~ai~i~~A~~l~~~~~~~ 235 (358)
T PF01566_consen 160 LLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGM----IVSFLINVAILIVAAAVLYPGGSEV 235 (358)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccch
Confidence 999999999999999999999999998865421 1344567777664 4578999999999999999777778
Q ss_pred cCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCc
Q 000798 276 LTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGA 355 (1279)
Q Consensus 276 ~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~ 355 (1279)
.+.+|++++|+|.+|++|++++|++|+|+|+|+|+++++++++++++++++++.+++.|+.+++...++|+++++++.+.
T Consensus 236 ~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (358)
T PF01566_consen 236 ETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGA 315 (358)
T ss_pred hhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999757999999999999999999999999999999999999888888888889999999988776665
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchH
Q 000798 356 EG-VYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQ 397 (1279)
Q Consensus 356 ~~-l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGefrNs~ 397 (1279)
.. |+++++++|++++++||++++|+++++|||++||+|||+|
T Consensus 316 ~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 316 PGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 43 4899999999999999999999999999999999999985
No 6
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=99.04 E-value=4.9e-07 Score=104.85 Aligned_cols=123 Identities=14% Similarity=0.133 Sum_probs=87.5
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFA----AIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 104 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~----a~llQ~LAARLGVVTGk~LAEicRe~YgK-~~~~~LwI 104 (1279)
|+-+.+.+++.+........+..+|+..+|..+...+. ++++...--|.| ..++.|.+++||++ ..+.+..+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 34455668899999999999999998887765543332 223322223334 67899999999998 45555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchh
Q 000798 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 105 ~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g 155 (1279)
...+..+..-..++.|.+..++.++|+|.+.++++.++.+++...++..+.
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~a 138 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKA 138 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHH
Confidence 445555555667788999999989999999999998888877777764433
No 7
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=99.04 E-value=2.3e-06 Score=102.56 Aligned_cols=123 Identities=14% Similarity=0.126 Sum_probs=85.2
Q ss_pred HhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-----CCcHHHHHHhhcCch---hHHHHH
Q 000798 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIG 103 (1279)
Q Consensus 33 vSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~-llQ~LAARLGVVT-----Gk~LAEicRe~YgK~---~~~~Lw 103 (1279)
+.+.++....+......+..+|+..+|..+-..+..+ ....++.|+-+-+ -.++.|.+++||++. .+.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3446788888888888888999988887654333222 2344566665433 247999999999953 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchh
Q 000798 104 VQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 104 I~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g 155 (1279)
+...+..+.....++.|.+..++.++|+|.+++++++++.+++..+++-.+.
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~a 182 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLA 182 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444444444455677889999999999999999999888888877764433
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.01 E-value=5.3e-06 Score=98.38 Aligned_cols=122 Identities=13% Similarity=0.210 Sum_probs=81.1
Q ss_pred HHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHHHH----hcCCcHHHHHHhhcCch-hHHHHHHH
Q 000798 32 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAV----VTGKDLAQICGEEYDKW-TCVFIGVQ 105 (1279)
Q Consensus 32 LvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~ll-Q~LAARLGV----VTGk~LAEicRe~YgK~-~~~~LwI~ 105 (1279)
-+.+++++++.+......+.++|+...|......++++++ -.++.|+.. ..-.++.|.+++||++. .+++..+.
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~ 129 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSIS 129 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHH
Confidence 3445678888888888788888876433322222233322 122333311 12468999999999954 45565555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q 000798 106 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 106 aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy 153 (1279)
..+..+.....++.|.+..++.++|+|.+.++++.++.+.++..++..
T Consensus 130 ~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG~ 177 (471)
T TIGR02119 130 LLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGGF 177 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 555566666678889999999999999999999988877777766543
No 9
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.98 E-value=1.8e-05 Score=94.59 Aligned_cols=122 Identities=11% Similarity=0.158 Sum_probs=79.8
Q ss_pred hhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-----CCcHHHHHHhhcCch---hHHHHHH
Q 000798 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIGV 104 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~l-lQ~LAARLGVVT-----Gk~LAEicRe~YgK~---~~~~LwI 104 (1279)
++.++....+......+..+|+.-+|..+-..+..++ ...++.|+-..+ -.++.|.+++|||+. .+.+..+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 3445666666666667778888777775432222222 233466655444 356999999999953 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchh
Q 000798 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 105 ~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g 155 (1279)
+..+..+.....++.|.+..++.++|+|.+.+++++++.+.+...++..+.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~a 178 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGFLA 178 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHH
Confidence 444444444556677888899989999999999998888887777764433
No 10
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.97 E-value=2.1e-07 Score=107.43 Aligned_cols=120 Identities=11% Similarity=0.242 Sum_probs=89.0
Q ss_pred HhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHhhcCchh--HHHHHHHHHHH
Q 000798 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWT--CVFIGVQTELS 109 (1279)
Q Consensus 33 vSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~ll-Q~LAARLGVVTGk~LAEicRe~YgK~~--~~~LwI~aeLA 109 (1279)
+.+..++.+.+......+.++|+..+|..+...+..+++ -.++.|+=-....++.|.+++||++.. +++.++...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345678999999999999999999999887666655544 446888888888999999999999987 56656555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhcc
Q 000798 110 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 152 (1279)
Q Consensus 110 IIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgs 152 (1279)
.+..-..++.|.+..++.++|+|...+++++++.+.+..+++-
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GG 139 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGG 139 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT-
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhh
Confidence 6566667888999999999999999999888877766655543
No 11
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.96 E-value=2.4e-05 Score=93.33 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=78.4
Q ss_pred hhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCCcHHHHHHhhcCchh-HHHHHHH
Q 000798 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--------FCQYLSARIAVVTGKDLAQICGEEYDKWT-CVFIGVQ 105 (1279)
Q Consensus 35 iAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~--------llQ~LAARLGVVTGk~LAEicRe~YgK~~-~~~LwI~ 105 (1279)
+.+++.+.+....+...++|+...|..+...+..+ .+..+.-|.+ ..+..|.+++||++.. +++..+.
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i~ 130 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASLS 130 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHHH
Confidence 45677777777777777788775555433222222 2222333433 4678999999999654 4444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhH
Q 000798 106 TELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 106 aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~ 156 (1279)
..+..+..-..++.|.+..++.++|+|.+++++++++.+.++..++..+..
T Consensus 131 ~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~av 181 (483)
T PRK09442 131 LLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGFRAV 181 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccHHHH
Confidence 444444455567889999999999999999999888887777776644333
No 12
>PRK12488 acetate permease; Provisional
Probab=98.95 E-value=7.7e-06 Score=99.40 Aligned_cols=126 Identities=17% Similarity=0.161 Sum_probs=95.2
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC--QYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~ll--Q~LAARLGVVTGk~LAEicRe~Yg-K~~~~~LwI~a 106 (1279)
|+-+++.++..+.+......+..+|+.-+|..+- ..+++++ ..++.|+=-..-.++.|.+.+||+ |..+++..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 5566677888888888888889999998876543 3333332 345666544445789999999998 56777777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhH
Q 000798 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 107 eLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~ 156 (1279)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+.+..+++-.++.
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~av 203 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLAT 203 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHH
Confidence 66666777788889999999999999999999998888888877654443
No 13
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.92 E-value=1.8e-05 Score=96.33 Aligned_cols=128 Identities=16% Similarity=0.197 Sum_probs=92.8
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--FCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~--llQ~LAARLGVVTGk~LAEicRe~Yg-K~~~~~LwI~a 106 (1279)
|+-+++.+++...+......+..+|+.-+|..+ ..++++ ++-.++.|+--..-.++.|.+.+||+ |..+++..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566678888888888888899999888653 333333 22335666655555789999999997 55677665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHH
Q 000798 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYK 158 (1279)
Q Consensus 107 eLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RK 158 (1279)
.+..+..-..++.|.+..++.++|+|.+++++++++.+.+...++-.++.-.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5555555667788999999999999999999999988888877764433333
No 14
>PRK09395 actP acetate permease; Provisional
Probab=98.92 E-value=8.3e-06 Score=99.05 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=93.0
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~l--lQ~LAARLGVVTGk~LAEicRe~Yg-K~~~~~LwI~a 106 (1279)
|+-+.+.++..+.+......+..+|+.-+|..+-. .++++ .-.++.|+=-..-.+..|.+++||+ |..+++..+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~-~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGF-LVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 45566678888899988888889999877765433 22222 2234666655555789999999999 55777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchh
Q 000798 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 107 eLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g 155 (1279)
.+..+..-..+++|.+..++.++|+|.+.+++++++.+.+...++-.+.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 6666666677888999999999999999999999998888888765444
No 15
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.88 E-value=1.7e-05 Score=93.03 Aligned_cols=341 Identities=16% Similarity=0.147 Sum_probs=168.3
Q ss_pred hhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHhhcCchhHHHH
Q 000798 25 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT--GKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 25 a~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVT--Gk~LAEicRe~YgK~~~~~L 102 (1279)
+.+|=.+++....+|+|=+.==.++|...-.-.+++++++-++++.-+.+-+++-.-+ |.++.+.+++.+||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 3566777777788999999888876654444555556666666677777777777655 88899999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 000798 103 GVQTELSVILLDLTMVLGIAHGLNLLM------GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVL 176 (1279)
Q Consensus 103 wI~aeLAIIaaDIaEVIGiAIALnLLF------GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi 176 (1279)
|+...+..-+.-.+-+.|.+-.+.-++ ++|.+++.++..+....+++++. +.+.++...++..|+++|+.
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~----~~v~~~n~~lv~~~i~~~~~ 159 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT----KAVDRINRVLVFGMIISFII 159 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Confidence 665444433333333334433333233 34556655554444444444443 34455555556667777776
Q ss_pred HHHhhCCChh--hhccccccccCCChHHHHHHHhcccchhHHH-HHhHHhhhhccccccccchhhhhhHHHHHHHHHHHH
Q 000798 177 GVLISQPEIP--LSVNGMLTKFSGDSAFSIMSLLGASMMPHNF-YLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGI 253 (1279)
Q Consensus 177 ~l~vs~Pd~~--eVl~GLVP~lp~~sl~~aVAIIGATIMPhNf-YLHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lgs 253 (1279)
..+..-|.|. .+.. .+..+. ....+...+--.+.-.++ ..=+.+++--+.++ ++.++--+.+....++ .
T Consensus 160 l~~~~~p~~~~~~L~~--~~~~~~-~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~----~k~~~ai~~Gs~i~lv-~ 231 (394)
T PF03222_consen 160 LVVYLIPHWNPSNLLD--APPSPS-DWSYILPALPVLVFSFGFHNIVPSLVKYLGGDP----KKIRKAIIIGSLIPLV-M 231 (394)
T ss_pred HHHHHhhhcCHHHhhc--cccccc-cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccH----HHHHHHHHHHHHHHHH-H
Confidence 6665556654 1111 111111 111122222222211111 01123333222221 1222322222211111 1
Q ss_pred HHHHHHHHHHHH---Hh---hccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000798 254 YMVNYVLMNSAA---NL---FYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 254 fLINlaVViVaA---av---LygtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
+++ ..+.+++. .. ....| .+.......+.+..++++..++.-+-.+.|-.+|-+...++-.-.+.+.+++
T Consensus 232 yl~-w~~~~lg~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 232 YLL-WVFSILGSLPREQFAEAIAQG---GNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHH-HHHHHHhcCCHHHHHHHHhcC---CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 110 11111110 00 00111 1223344456666666665554444444555666666666643334455565
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 328 DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 328 ri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtN 385 (1279)
+...+.| ..+..++.+|.++++++. -++....+.++....++ =+.++|.+..-.
T Consensus 308 ~~~~~~r-~~~~~ltf~ppl~~a~~~-p~~F~~al~~aG~~~~i--l~~ilP~~m~~~ 361 (394)
T PF03222_consen 308 KNNSSGR-LKTWLLTFLPPLIFALLF-PNGFLIALGYAGIGIAI--LLGILPALMVWK 361 (394)
T ss_pred Cccccch-HHHHHHHHHhHHHHHHHC-cHHHHHHHHhhcHHHHH--HHHHHHHHHHHH
Confidence 3333434 444466677777766643 33566677776633222 234455554433
No 16
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.68 E-value=0.00011 Score=86.66 Aligned_cols=340 Identities=14% Similarity=0.085 Sum_probs=161.5
Q ss_pred hhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHH-HHHHHHHHHHHHHH--hcCCcHHHHHHhhcCchhHHH
Q 000798 25 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-AAIFCQYLSARIAV--VTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 25 a~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI-~a~llQ~LAARLGV--VTGk~LAEicRe~YgK~~~~~ 101 (1279)
+.+|=.++++...+|+|=+.==+++|...-+-.+-++++.-+ |.+.-.. -+|.-. --|.++-++.++.+||.++++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568888999999999999998888886433333333333322 3333232 223222 236789999999999988887
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHh---h--CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 000798 102 IGVQTELSVILLDLTMVLGI-AHGLNLL---M--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYV 175 (1279)
Q Consensus 102 LwI~aeLAIIaaDIaEVIGi-AIALnLL---F--GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFV 175 (1279)
.|+...+...+.-.+=+.|. .+--|.+ + ++|.+.+.++..+...++++++ .+.+.++..+++..|.++|+
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g----~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG----TSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHH
Confidence 76655444333322222231 1111211 2 3466666555444444455544 34555555556666777777
Q ss_pred HHHHhhCCChhhhccccc--cccCCChHHHH----HHHhcc-cchhHHHHHhHHhhhhccccccccchhhhhhHHHHHHH
Q 000798 176 LGVLISQPEIPLSVNGML--TKFSGDSAFSI----MSLLGA-SMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILC 248 (1279)
Q Consensus 176 i~l~vs~Pd~~eVl~GLV--P~lp~~sl~~a----VAIIGA-TIMPhNfYLHSaLVqsR~~~~~~~~~a~~~D~~~~il~ 248 (1279)
+..+..-|+|.... +. | ...+.+..+ +--+|- .++|- +++-.+. + .++.++--..+...
T Consensus 159 ~~~~~l~p~~~~~~--L~~~~-~~~~~~~~~iPvl~~SFgfh~iIps-------l~~y~~~--~--~~~~~k~i~~Gs~i 224 (403)
T PRK15132 159 VMLALMMPHIHKVN--LLTLP-LQQGLALSAIPVIFTSFGFHGSVPS-------IVSYMGG--N--IRKLRWVFIIGSAI 224 (403)
T ss_pred HHHHHHHHhcCHHH--HhcCC-ccccHHHHHHHHHHHHhhCCcccHH-------HHHHhCc--C--HHHHHHHHHHHHHH
Confidence 66555567765211 11 2 111222222 222232 12232 1111111 1 11223322222211
Q ss_pred HHHH-HHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000798 249 IFSG-IYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 249 i~lg-sfLINlaVViVaAavLygtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
.++. .+.+-.++..+....+...-.+-.+..+..+.+.+.+++++...+..+-.+.|..+|-+...++-.--+.+.++.
T Consensus 225 ~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~ 304 (403)
T PRK15132 225 PLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR 304 (403)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 1100 111111221122222211000111233445566776666766555444444566677776666643333444444
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000798 328 DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 328 ri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr 387 (1279)
+.+... |..+.+++.+|.++++.+. -+.....+.++.++.++ =+.++|.+..-..|
T Consensus 305 ~~~~~~-r~~~~~l~flppli~a~~~-P~~F~~al~~aG~~~ai--l~~ilP~~m~~~~r 360 (403)
T PRK15132 305 RNTVGG-RLQTGLITFLPPLAFALFY-PRGFVMALGYAGVALAV--LALLLPSLLVWQSR 360 (403)
T ss_pred CccccC-CchhehhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh
Confidence 433333 4445567777888776642 22344555555554332 23445655443333
No 17
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.64 E-value=0.00031 Score=84.80 Aligned_cols=138 Identities=14% Similarity=0.210 Sum_probs=94.6
Q ss_pred hhHHHH-HhhhccccchHHHHHHHHHhH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHhc----CCcHHHHHHhhcC-ch
Q 000798 27 VLPVLL-ISIGYVDPGKWAVIIEGGAHF--GFDLVALMLVFNFAAI-FCQYLSARIAVVT----GKDLAQICGEEYD-KW 97 (1279)
Q Consensus 27 lGPGfL-vSiAyIDPGnIaT~lQAGA~F--GY~LLWVLLLAtI~a~-llQ~LAARLGVVT----Gk~LAEicRe~Yg-K~ 97 (1279)
+||+.. ++++.-+-+.|+----.|..| |+.-+|..+...+..+ ..-.++.|+=..+ -.++.|.+++||+ +.
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~ 119 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKI 119 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChH
Confidence 455522 233344555555444555555 9999998877643333 3445567777777 6789999999999 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 000798 98 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWI 164 (1279)
Q Consensus 98 ~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~ 164 (1279)
.+.+..+...+..+..-..++.|.+..++.++|++...++++.++.+.+..+++..+..-.-+.+-.
T Consensus 120 lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg 186 (493)
T COG0591 120 LRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQG 186 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHH
Confidence 7777666666666666566778998888999999999998888888888888776555555455433
No 18
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.63 E-value=0.00053 Score=83.61 Aligned_cols=121 Identities=12% Similarity=0.200 Sum_probs=85.8
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 104 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLA----tI~a~llQ~LAARLGVVTGk~LAEicRe~YgK-~~~~~LwI 104 (1279)
|+-+.+.++..+.+......+..+||..+|..+-. .++++++-..--|+|+ .++.|.+.+||++ ..+++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 44455667888888888888888898877665321 2233444444455554 5789999999984 45666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q 000798 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 105 ~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy 153 (1279)
...+..+..-..++.|.+..++.++|+|.++++++.++.+.+...++-.
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~ 165 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGM 165 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 5555555555667779999999999999999999988888777776643
No 19
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.60 E-value=9.5e-05 Score=88.02 Aligned_cols=328 Identities=11% Similarity=0.025 Sum_probs=171.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 000798 56 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELST 135 (1279)
Q Consensus 56 ~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~ 135 (1279)
+-++.+++.++++.++.-..+-.|..||..=...-|..+|.+.+++.-+...+..++--.-+++=.+.+.+...|+|.++
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45678899999999999999999999999998899999999887766555555555544334443333333335789999
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH-hhCC-ChhhhccccccccCCChHHHHHHHhcccch
Q 000798 136 CVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL-ISQP-EIPLSVNGMLTKFSGDSAFSIMSLLGASMM 213 (1279)
Q Consensus 136 gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~-vs~P-d~~eVl~GLVP~lp~~sl~~aVAIIGATIM 213 (1279)
++++.++.+.+..++| |+..+++|++... ++.+.|++... ..++ +.......-.|..+ .++..+++++=+.++
T Consensus 133 ~ili~g~l~~l~~ifG-~r~l~~l~~~a~~---~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~-~~fl~a~slv~g~~~ 207 (442)
T COG1457 133 GILIIGVLMTLVTIFG-YRALHKLERIAVP---LLLLLFLYLLALLFRSKGGLDALWVKGPTSP-LSFLSALSLVIGSFA 207 (442)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccceeeccCCCcc-hhHHHHHHHHHHHHH
Confidence 9999888887777765 4456666766443 34444443332 2222 22221111113222 233333333222233
Q ss_pred hHHHHHhHHhhhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccch
Q 000798 214 PHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPV 293 (1279)
Q Consensus 214 PhNfYLHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lgsfLINlaVViVaAavLygtG~~V~tl~dAa~aLepvLGg~~ 293 (1279)
-+-.|. +-+. |-.+++ +. +|.++. .+++.++-+.++++++|+.--..|... ...+ ....+|+ +
T Consensus 208 sw~~~~-aDys--Ry~~~~---t~--~~~~~~---~~~G~~l~~~~~~ilGa~~a~a~g~~~-~~~~----~~~~~G~-~ 270 (442)
T COG1457 208 SWGPYA-ADYS--RYAPSP---TP--SKAFLA---AVLGFFLGTSFMMILGAALAAAAGNAD-SIAD----VMLGLGG-F 270 (442)
T ss_pred hhhhhh-hhhh--hhcCCC---ch--HHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-hHHH----HHHhccc-H
Confidence 332222 1111 111111 11 233332 235667777888888877643444322 1222 2233452 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 000798 294 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIML 373 (1279)
Q Consensus 294 A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~L 373 (1279)
+ ..-.+++..+..++.....|++..-+..... +.+++.+..++.+ . +.+++.+++.. -...+..|...+....-
T Consensus 271 g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~-~l~k~~~~v~~~v-~-igt~la~~~~~--f~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 271 G-LPAILILVLGTVTTNANNLYSAGLSFANIIP-KLSKVTRVVIAGV-G-IGTLLALAGPF--FYNFFENFLLLLGYFIP 344 (442)
T ss_pred H-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh-hhhhHHHHHHHHH-H-HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 2 2223445555555556667776555444432 1233333333322 1 34433332211 13455667777778888
Q ss_pred HHHHHHHH-HHHhccc-----cccCCCchHHHHHHHHHHHHHHH
Q 000798 374 PSSVIPLF-RVASSRQ-----IMGVHKISQYHEFLVLITFMGML 411 (1279)
Q Consensus 374 PFALIPLL-~LtNsr~-----IMGefrNs~~~nILawii~llIi 411 (1279)
|...|-+- ++..+|. +++.++.-.+.-..+|+..+++-
T Consensus 345 P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~~iv~ 388 (442)
T COG1457 345 PWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAGLIVG 388 (442)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchHHHHHHHHHH
Confidence 88887665 3344433 33333222334455666555544
No 20
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.55 E-value=0.00024 Score=84.80 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=94.6
Q ss_pred hhHHHHHh--hhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHhhcCchhHHH
Q 000798 27 VLPVLLIS--IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT---GKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 lGPGfLvS--iAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVT---Gk~LAEicRe~YgK~~~~~ 101 (1279)
..=+|+++ ...+|+|=+.==+++|...=+-++-+++++-+++++...+-.|.-.-. |.++-+..++++||.+.++
T Consensus 20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i 99 (443)
T PRK13629 20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVV 99 (443)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHH
Confidence 33444444 447999999999999876665566566666666666655555654443 6889999999999988877
Q ss_pred HHHHHHHH---HHHHHH---HHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 000798 102 IGVQTELS---VILLDL---TMVLGIAHGLNLLMGV---ELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILL 172 (1279)
Q Consensus 102 LwI~aeLA---IIaaDI---aEVIGiAIALnLLFGI---PL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlL 172 (1279)
.|+...++ ++...+ ++.+..-+ .| .+|+ |.++..++.++....++++ |.+.+.++...|+..+++
T Consensus 100 ~~ilYff~ly~ll~aY~~~itn~l~sfl-~~-ql~~~~~~r~l~slifv~~l~~iv~~----G~~~v~kv~~~Lv~~~i~ 173 (443)
T PRK13629 100 ITFLYFFAICPLLWIYGVTITNTFMTFW-EN-QLGFAPLNRGFVALFLLLLMAFVIWF----GKDLMVKVMSYLVWPFIA 173 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh-hcCcCCccHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHH
Confidence 66554433 333332 12111110 01 1343 5565555544444444444 446667777777777888
Q ss_pred HHHHHHHhhCCChh
Q 000798 173 SYVLGVLISQPEIP 186 (1279)
Q Consensus 173 sFVi~l~vs~Pd~~ 186 (1279)
+|+...+..-|.|.
T Consensus 174 ~l~~l~~~LiP~w~ 187 (443)
T PRK13629 174 SLVLISLSLIPYWN 187 (443)
T ss_pred HHHHHHHHHHHHcC
Confidence 88877777778776
No 21
>PRK10484 putative transporter; Provisional
Probab=98.55 E-value=0.0031 Score=76.61 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=60.0
Q ss_pred HHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHH
Q 000798 32 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 110 (1279)
Q Consensus 32 LvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~-llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAI 110 (1279)
=+.+.++..+.+......+..+|+..+|..+...+..+ +.-.++.|+--.-=.++.|.+++||++..+.++.+...+..
T Consensus 48 sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~ 127 (523)
T PRK10484 48 SLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGY 127 (523)
T ss_pred HHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34445688888888888888888876533222222211 11223445433233578999999999876654433332332
Q ss_pred HHHHHHH-HHHHHHHHHH------hhCChhHHHHHHH
Q 000798 111 ILLDLTM-VLGIAHGLNL------LMGVELSTCVFLA 140 (1279)
Q Consensus 111 IaaDIaE-VIGiAIALnL------LFGIPL~~gVLIT 140 (1279)
+...++. +.+.+++++- ++|+|..+++.++
T Consensus 128 ~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 128 VVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 2222222 2233444432 4688877766554
No 22
>PRK10483 tryptophan permease; Provisional
Probab=98.53 E-value=0.00014 Score=86.27 Aligned_cols=336 Identities=11% Similarity=0.103 Sum_probs=158.6
Q ss_pred HhhhhHHHHHhhhccccchHHHHH-HHHHhHhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcHHHHHHhhcCchhH
Q 000798 24 VPAVLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVFNFA---AIFCQYLSARIAVVTGKDLAQICGEEYDKWTC 99 (1279)
Q Consensus 24 La~lGPGfLvSiAyIDPGnIaT~l-QAGA~FGY~LLWVLLLAtI~---a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~ 99 (1279)
.+.+|=.+|++...+|.|=++--. .+|+-|.+.++-.++.-.+| ++++-|..-+.. -|.++..+-++..||.+.
T Consensus 11 ~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~ 88 (414)
T PRK10483 11 PSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWN 88 (414)
T ss_pred CcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHH
Confidence 456888899999999999886543 33344444433332222222 223555555543 477899999999999888
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 000798 100 VFIGVQT---ELSVILLDLTMVLGIAHGLNLLM-----GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIIL 171 (1279)
Q Consensus 100 ~~LwI~a---eLAIIaaDIaEVIGiAIALnLLF-----GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMl 171 (1279)
++.|+.. ..+.+.+.+. |.+--++-++ ++|.+++.++..+..-.+++.+. +-.+|++ ..+++.|.
T Consensus 89 ~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n---~~l~~~~i 161 (414)
T PRK10483 89 VVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMT---AIVLGAKV 161 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHH---HHHHHHHH
Confidence 7766543 3344444443 3332222222 45888887776666666666554 2344544 44556677
Q ss_pred HHHHHHHHhhCCC--hhhhccccccccCCChHHHHHHHhcccchhHHH--HHhHH----hhhhccccccccchhhhhhHH
Q 000798 172 LSYVLGVLISQPE--IPLSVNGMLTKFSGDSAFSIMSLLGASMMPHNF--YLHSS----IVRRHQGQVNISKGALCHDHF 243 (1279)
Q Consensus 172 LsFVi~l~vs~Pd--~~eVl~GLVP~lp~~sl~~aVAIIGATIMPhNf--YLHSa----LVqsR~~~~~~~~~a~~~D~~ 243 (1279)
++|++.+...-|+ ...+.+. +.-.+...-.+. ...|-.+ |-|.. +++.-+ .| .+++++--.
T Consensus 162 ~~f~~~~~~l~~~i~~~~L~~~--~~~~~~~~~~~~-----~alPvl~~SFgfh~iIPsl~~y~~--~d--~~kir~~I~ 230 (414)
T PRK10483 162 ITFFLTFGSLLGHVQPATLFNV--AESNASYAPYLL-----MTLPFCLASFGYHGNVPSLMKYYG--KD--PKTIVKCLV 230 (414)
T ss_pred HHHHHHHHHHHhhcCHHHHhcc--ccccchhHHHHH-----HHHHHHHhhccCCCcchHHHHHhC--cC--HHHHHHHHH
Confidence 7777654443343 2222221 100111000010 1112222 21111 222211 11 112333222
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000798 244 FAILCIFSGIYMVNYVLMN-----SAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQ 318 (1279)
Q Consensus 244 ~~il~i~lgsfLINlaVVi-----VaAavLygtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq 318 (1279)
.+... .+++-++.+. +....+...-..-.+.....+.+...+++++...++.+-.+.|..+|-+...++-.
T Consensus 231 iGs~I----plv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~ 306 (414)
T PRK10483 231 YGTLM----ALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLF 306 (414)
T ss_pred HHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1111111111 11111100000011233334556666665554444444444565666666666643
Q ss_pred HHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000798 319 VVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 319 ~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr 387 (1279)
--+.+.++++.+ ...|+.+.+++.+|-+++++++ -++....+.++..+.++.. .++|.+..-..|
T Consensus 307 d~l~D~~k~~~~-~~~r~~~~~ltflPPl~~al~~-P~~Fl~AL~yAG~~~~il~--~ilP~lM~~~~R 371 (414)
T PRK10483 307 DYLADLFGFDDS-AMGRFKTALLTFLPPVVGGLLF-PNGFLYAIGYAGLAATIWA--AIVPALLARASR 371 (414)
T ss_pred HHHHHHhCCCCc-cccceeeehhhHhhHHHHHHHh-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 333444555433 2334445566778888877653 2345666777766644333 455655544444
No 23
>PRK15049 L-asparagine permease; Provisional
Probab=98.52 E-value=0.004 Score=75.19 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=25.7
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
.+++. .|.+++..++.++++.+.+++..+..++...++
T Consensus 293 ~~~~~-~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 293 TFFSK-LGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 455777777778888888888877777654444
No 24
>PRK11017 codB cytosine permease; Provisional
Probab=98.50 E-value=0.0016 Score=76.69 Aligned_cols=108 Identities=9% Similarity=0.044 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCChhH
Q 000798 56 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVLGIAHGLNLLMGVELS 134 (1279)
Q Consensus 56 ~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAIIa-aDIaEVIGiAIALnLLFGIPL~ 134 (1279)
+-++.+++++++..++--+.++.|..+|.+-.-.+|..||.+...+..+...+..++ .-++..++ +.+++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhCCCHH
Confidence 456788888999999999999999999999999999999987666544433333332 22333332 3445556788766
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 000798 135 TCVFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 135 ~gVLITavdt~LLL~lgsy~g~RKlE~li~l 165 (1279)
.++++..+...++.+++ ++..++++++...
T Consensus 122 ~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p 151 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFG-ISALTILSRIAVP 151 (404)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 66665555555555443 4455666665443
No 25
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.50 E-value=0.0001 Score=87.22 Aligned_cols=284 Identities=14% Similarity=0.155 Sum_probs=141.9
Q ss_pred hhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHhhcCchh-HHHHHH
Q 000798 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD---------LAQICGEEYDKWT-CVFIGV 104 (1279)
Q Consensus 35 iAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~---------LAEicRe~YgK~~-~~~LwI 104 (1279)
++-+|+||++--..|=+.=|-.-+..+.++.++++...+.-.-||+...+. .+--+++-.+++| .++.-+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 346999999888887777788888888888888888888777777765432 4555555555432 222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 000798 105 QTELSV-ILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI--- 180 (1279)
Q Consensus 105 ~aeLAI-IaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~v--- 180 (1279)
++.++. ++..+.+.--++.+++.-||+|.|+..++.++.+.++ .++ |.|++-++...++=+|++.|++..+.
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~v-i~G---GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~ 185 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALV-IFG---GIKRIAKVSEKLVPFMAILYILGGLIIII 185 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH-HHc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 1112333334566677678997665444444434333 333 56777777666666777777765432
Q ss_pred hC-CChhhhcccccc-ccCCChHHHHHHHhcccchhHHHH-HhHHhhhhc-cccc-cccchhhhhhHHHHHH-HHHHHHH
Q 000798 181 SQ-PEIPLSVNGMLT-KFSGDSAFSIMSLLGASMMPHNFY-LHSSIVRRH-QGQV-NISKGALCHDHFFAIL-CIFSGIY 254 (1279)
Q Consensus 181 s~-Pd~~eVl~GLVP-~lp~~sl~~aVAIIGATIMPhNfY-LHSaLVqsR-~~~~-~~~~~a~~~D~~~~il-~i~lgsf 254 (1279)
.+ .+.++++.-.+- -+..++ ..-|.+|++++--.-+ +.-++--.. .... .....+...||-..-. ..++..|
T Consensus 186 ~n~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vF 263 (416)
T PF01235_consen 186 INIDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVF 263 (416)
T ss_pred hhhhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHh
Confidence 23 233333222211 011111 1235566555321111 000000000 0000 0000000000000000 0001112
Q ss_pred HHHHHHHHHHHHhhccCCc-----cccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000798 255 MVNYVLMNSAANLFYSTGL-----VLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 325 (1279)
Q Consensus 255 LINlaVViVaAavLygtG~-----~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL 325 (1279)
+=++.+..+.|.++--+|. .....+=...+++..+| +|+.++.++.++.-+++|.+++.+-++...+-++
T Consensus 264 iDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g-~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 264 IDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLG-SWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2222222223332222331 11112222346788887 7999999999999999999999988877776665
No 26
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.44 E-value=0.00011 Score=86.41 Aligned_cols=124 Identities=12% Similarity=0.030 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhc-CCcHHHHHHhhcCchhHHHHHHHHHHHHHH------HHHHHHHHHHHH
Q 000798 58 VALMLVFNFAAIFCQYLSAR------IAVVT-GKDLAQICGEEYDKWTCVFIGVQTELSVIL------LDLTMVLGIAHG 124 (1279)
Q Consensus 58 LWVLLLAtI~a~llQ~LAAR------LGVVT-Gk~LAEicRe~YgK~~~~~LwI~aeLAIIa------aDIaEVIGiAIA 124 (1279)
.|..+++.++++++.++.+| +.--. ++++.|..++.+||++..++++.-.+.... ..+++.++.-+.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666667777777667666 34444 889999999999999887654433222222 222223222222
Q ss_pred HHHhhCChhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCCh
Q 000798 125 LNLLMGVELST-CVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEI 185 (1279)
Q Consensus 125 LnLLFGIPL~~-gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~ 185 (1279)
-.+++..|.++ ..++..+....++ +.|.+.+.++..+++..+++.+++..+..-|.|
T Consensus 113 ~~~~~~~p~~~i~~lilv~il~~iv----~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTAPPLRGLLSLALILILVAIM----SFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCCCcHHHHHHHHHHHHHHHHH----HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11222344443 2222222212222 235566666555555445555555444444554
No 27
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.44 E-value=0.00036 Score=80.24 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=43.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhc
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTS 353 (1279)
Q Consensus 281 Aa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~ 353 (1279)
..+++...+|+++...+..++.+.|..+|.+.+.++-.--..+.++++.++ .+|....+++.+|.++++.+.
T Consensus 255 l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHh
Confidence 344566667767777777787778877888877777443355555543222 223444456666777766543
No 28
>PRK10249 phenylalanine transporter; Provisional
Probab=98.42 E-value=0.0057 Score=72.88 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=49.2
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 lGPGfLvSiA-yIDPGnIaT~lQAGA~FGY~LLWVLLLA----tI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+|=|-++..| ++.||..... +|. ..+|..+++ .+.++.+-||+.++=. +| +...-.++.+|+.+.++
T Consensus 31 i~ig~~IGsGif~~~g~~~~~--aGp----~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~ 102 (458)
T PRK10249 31 IALGGAIGTGLFLGIGPAIQM--AGP----AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFL 102 (458)
T ss_pred hhhhcccchhHHHHHHHHHHh--cCc----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHH
Confidence 3444444444 4566665542 232 233333333 3444445555555433 44 67778888899877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHH
Q 000798 102 IGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTC 136 (1279)
Q Consensus 102 LwI~aeLAIIaaDIaEVIGiAIALnLLFG-IPL~~g 136 (1279)
.....-++.+.....|+.+.+.-++.+++ .|.+..
T Consensus 103 ~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 138 (458)
T PRK10249 103 SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHH
Confidence 42222222222334455554444444443 455543
No 29
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.39 E-value=0.00091 Score=79.52 Aligned_cols=334 Identities=12% Similarity=0.109 Sum_probs=155.0
Q ss_pred hhhhHHHHHhhhccccchHHHHH-HHHHhHhHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000798 25 PAVLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVFNF---AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 25 a~lGPGfLvSiAyIDPGnIaT~l-QAGA~FGY~LLWVLLLAtI---~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~ 100 (1279)
+.+|=.+|++...+|+|=++=-. .+|+-|-+.++-.++.-.+ -++++-|..-+.. .|.++..+.++..||.+++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 67897778888889999776433 2333333333222222122 2234555555553 5888999999999999888
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHh----h--CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 000798 101 FIGVQT---ELSVILLDLTMVLGIAHGLNLL----M--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIIL 171 (1279)
Q Consensus 101 ~LwI~a---eLAIIaaDIaEVIGiAIALnLL----F--GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMl 171 (1279)
+.|+.. ..+...+.++ |.+--++-+ + ++|..++.++..+..-.+++.+. +..++++++ +++.|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYis---ggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~---l~~~~i 160 (415)
T PRK09664 88 ISGITVAFVLYILTYAYIS---ANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSL---FLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHH---HHHHHH
Confidence 777644 3344444443 322222112 2 45666554444444445555554 345555554 456677
Q ss_pred HHHHHHHHhhCCCh--hhhccccccccCCC-----hHHHH----HHHhcc-cchhHHHHHhHHhhhhccccccccchhhh
Q 000798 172 LSYVLGVLISQPEI--PLSVNGMLTKFSGD-----SAFSI----MSLLGA-SMMPHNFYLHSSIVRRHQGQVNISKGALC 239 (1279)
Q Consensus 172 LsFVi~l~vs~Pd~--~eVl~GLVP~lp~~-----sl~~a----VAIIGA-TIMPhNfYLHSaLVqsR~~~~~~~~~a~~ 239 (1279)
++|++.+...-|+. ..+.+. |...++ .++.+ +.-+|- .++|-.. +-.+. + .++.+
T Consensus 161 i~f~~~~~~l~~~i~~~~L~~~--~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~-------~y~~~--d--~~~~~ 227 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILRDA--TSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLI-------ICYGK--R--KDKLI 227 (415)
T ss_pred HHHHHHHHHHhhcccHHHHhcC--ccccccchHHHHHHHHHHHHHHhhhCCCcchHHH-------HHhCc--c--HHHHH
Confidence 77776555444443 222111 111111 12212 222232 2233321 11111 1 11222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-HHHHhhc---cCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000798 240 HDHFFAILCIFSGIYMVNYVLMN-SAANLFY---STGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 240 ~D~~~~il~i~lgsfLINlaVVi-VaAavLy---gtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTl 315 (1279)
+--+++....++..++...+++. +....+. .+| .+..+....+.....+++...+..+-.+.|..+|-+..++
T Consensus 228 kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g---~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~L 304 (415)
T PRK09664 228 KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSG---GNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTL 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC---CCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111111222222222 1000000 011 1222222223222344555555444445566677776677
Q ss_pred HHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000798 316 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 316 AGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr 387 (1279)
+-.--+.+.++++.+. ..|+.+.+++.+|-+++++++- ++....+.++....+ .=+.++|.+..-+.|
T Consensus 305 GL~D~l~D~~~~~~~~-~~r~~~~~ltflPPl~~al~~P-~gFl~AL~yAG~~~~--il~~ilP~lM~~~~R 372 (415)
T PRK09664 305 GLFDYLADLFKIDNSH-GGRFKTVLLTFLPPALLYLIFP-NGFIYGIGGAGLCAT--IWAVIIPAVLAIKAR 372 (415)
T ss_pred HHHHHHHHHhCCCCcc-ccceeeehhhHhhhHHHHHHhh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 6443444555655333 3344455677778887766532 345666667666533 334456666554444
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.34 E-value=0.018 Score=68.78 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=27.1
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 282 a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
..+++. +|++++..++.++++.+.+++..++.+++..++
T Consensus 278 ~~~~~~-~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 278 VLVFEK-VGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred HHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344555 466888888888888888888777777654443
No 31
>PRK11375 allantoin permease; Provisional
Probab=98.29 E-value=0.0078 Score=72.82 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000798 55 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 55 Y~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~L 102 (1279)
++.++.+++++++..++-.+.++.|..+|.+..-.+|..||.+...+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 456778889999999999999999999999999999999997765443
No 32
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.29 E-value=0.016 Score=69.17 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=25.6
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
++.+..+| +++..++.++++.+.+++..+...++..++
T Consensus 272 ~~~~~~~g-~~~~~~i~i~~~is~~~~~~~~~~~~sR~~ 309 (473)
T TIGR00905 272 AVLEMIVG-KWGAVLISLGLIISVLGSLLSWTMLAAEVP 309 (473)
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555 677778888888888888777776654433
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.25 E-value=0.0069 Score=72.13 Aligned_cols=131 Identities=7% Similarity=0.046 Sum_probs=61.8
Q ss_pred cccccccCC-CCchhHHHHHhhhhHHHHHhhh-ccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000798 6 MDAELANSN-YQSGVLYRLVPAVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTG 83 (1279)
Q Consensus 6 Me~~~~~~~-~~~~~~rklLa~lGPGfLvSiA-yIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTG 83 (1279)
||..+.... +..-+.++.. .+|=|-++..| ++.||......-.++-++| +..-++..++++.+-||+.++=. +|
T Consensus 1 ~~~~~~~~~l~r~L~~~~~~-~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG 76 (456)
T PRK10238 1 MEGQQHGEQLKRGLKNRHIQ-LIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG 76 (456)
T ss_pred CCccccchhhhccCcHHHHH-HHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 555444332 2223333332 34444444444 4677766654322232322 11122333334444566666654 34
Q ss_pred CcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHH
Q 000798 84 KDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAA 141 (1279)
Q Consensus 84 k~LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFG-IPL~~gVLITa 141 (1279)
+...-.++.+|+...++......++.+.....+..+.+.-++..++ .|.|...++..
T Consensus 77 -g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~ 134 (456)
T PRK10238 77 -SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFF 134 (456)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHH
Confidence 5666777889998776543322233333334444444444554553 46665544433
No 34
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.24 E-value=0.027 Score=66.96 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=36.6
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHhHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 lGPGfLvSiA-yIDPGnIaT~lQAGA~FGY~LLWVLLLA----tI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+|=|-++..| ++.||.... .+|. ..+|..+++ .++++.+-||+.++-. +| +...-.++.+|+.++++
T Consensus 19 i~vg~~IG~Gif~~~g~~~~--~aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G-g~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIK--MAGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS-SFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHcCcHHHHH
Confidence 4444444443 466665444 2333 233433433 3445556667666543 22 56667788899987765
Q ss_pred H
Q 000798 102 I 102 (1279)
Q Consensus 102 L 102 (1279)
.
T Consensus 91 ~ 91 (457)
T PRK10580 91 T 91 (457)
T ss_pred H
Confidence 4
No 35
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.22 E-value=0.029 Score=66.42 Aligned_cols=38 Identities=13% Similarity=0.259 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000798 63 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 63 LAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~L 102 (1279)
+..++++.+-||+.++-. +| +..+-.++.+|+++.++.
T Consensus 57 ~~~~~a~~~aEl~s~~P~-~G-g~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 57 LVVFIMRMLGEMAVANPD-TG-SFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 334555666677666543 22 567888889999877654
No 36
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.21 E-value=0.0022 Score=73.93 Aligned_cols=136 Identities=7% Similarity=0.063 Sum_probs=94.2
Q ss_pred hHHHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCch
Q 000798 19 VLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKW 97 (1279)
Q Consensus 19 ~~rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVV-TGk~LAEicRe~YgK~ 97 (1279)
+.|..++++| -+|.+|+--.=++.+.- ..||+.=.|-+++++++-.++=.....+|-. .-++..+.++.-.|++
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~QFF---~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIMQFF---GKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHHHHH---HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 4455666666 56666654444443332 4688888888888888877777777777665 4566778888777887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 000798 98 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLL 162 (1279)
Q Consensus 98 ~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKlE~l 162 (1279)
+..+.=+++.+..+.+..-+..|.+..++-.||+|.|+|.++......+.+++++ .++++.+
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~---vegi~tv 141 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR---VEGIITV 141 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc---ccceeee
Confidence 7766655666666666667777888888889999999997776666666666543 4555444
No 37
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.19 E-value=0.014 Score=70.69 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=30.2
Q ss_pred HhHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 51 AHFGFDLVALMLVFNF-----AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 51 A~FGY~LLWVLLLAtI-----~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
|.+|+.++...+++.+ .++.+.||++.+.-.+| +...-.++-+|+++.++
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 4667777554444433 45566666665431233 66777888888877654
No 38
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.16 E-value=0.019 Score=67.46 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 000798 55 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 112 (1279)
Q Consensus 55 Y~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAIIa 112 (1279)
++-+..+++++++..++--+.++.|..||.+-.-..|..||++.+.+..+.-.+..++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig 86 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG 86 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 6677888899999999999999999999999999999999988766554443333333
No 39
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.14 E-value=0.011 Score=76.99 Aligned_cols=31 Identities=16% Similarity=0.117 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 294 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 294 A~iLFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
...+..+|++++.+++.+++.++...++..+
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~Am 416 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQAL 416 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888899999999988888765555443
No 40
>PRK10746 putative transport protein YifK; Provisional
Probab=98.13 E-value=0.042 Score=65.81 Aligned_cols=40 Identities=8% Similarity=-0.071 Sum_probs=23.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
+++.. |.+.+..++.+.++.+.+++..++.+++..++-.+
T Consensus 274 ~~~~~-g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 274 TFAKI-GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 55555556666666676777777777654444333
No 41
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.11 E-value=0.052 Score=65.00 Aligned_cols=33 Identities=18% Similarity=0.084 Sum_probs=21.1
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 289 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 289 LGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
.|+++...++.+.++.+.+++.....++...++
T Consensus 289 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 289 VGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666667777777777777766666654433
No 42
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.10 E-value=0.012 Score=69.36 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=47.1
Q ss_pred hhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHH
Q 000798 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 105 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~ 105 (1279)
=.-++|.||+..-..-|.+.|-...+.++-..+-++.+=-++----..+| +-.+.+.++|||+...++...
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf~~~ 75 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILFTVI 75 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHHHHH
Confidence 34578999999999999998877666665555544444433333222244 566777888999888776433
No 43
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=98.08 E-value=0.0028 Score=75.82 Aligned_cols=231 Identities=15% Similarity=0.187 Sum_probs=126.1
Q ss_pred HHHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhc
Q 000798 73 YLSARIAVVTGKDLAQICGEEYDK-WTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFA 151 (1279)
Q Consensus 73 ~LAARLGVVTGk~LAEicRe~YgK-~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lg 151 (1279)
-.|-||==.-.-+.++.+.+||.. ..+++..+.+.+......++++.|+++-+.+++|+|..+++++..+...+...++
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~G 172 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLG 172 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhc
Confidence 345666555667899999999874 5666665555555666677899999999999999999999999888888877776
Q ss_pred cchhHHHHHHHHHH--HHHHHHHHHHHHH-HhhCCChh-hhccccccc----c---CC-------ChHHH-HHHHhcccc
Q 000798 152 GQLENYKAKLLWIC--TAGIILLSYVLGV-LISQPEIP-LSVNGMLTK----F---SG-------DSAFS-IMSLLGASM 212 (1279)
Q Consensus 152 sy~g~RKlE~li~l--LI~lMlLsFVi~l-~vs~Pd~~-eVl~GLVP~----l---p~-------~sl~~-aVAIIGATI 212 (1279)
.-++.-....+-.+ +++....+.++.. +-..|..- .......|. . |+ +.+.. .+=++|+.=
T Consensus 173 GM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAg 252 (529)
T COG4147 173 GMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAG 252 (529)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCC
Confidence 43333332222111 1111111111111 11122211 111111111 0 11 12222 244678888
Q ss_pred hhHHH--HHhHHhhhhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc---------------
Q 000798 213 MPHNF--YLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL--------------- 275 (1279)
Q Consensus 213 MPhNf--YLHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lgsfLINlaVViVaAavLygtG~~V--------------- 275 (1279)
+||.+ |..-. ..+++|+...-.. .+++.|-+...++..+|..+-.++..-
T Consensus 253 LPHil~RFfTvp-----------~~k~AR~Sv~wA~--~fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D~~ 319 (529)
T COG4147 253 LPHILMRFFTVP-----------DAKEARKSVFWAT--GFIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGDAN 319 (529)
T ss_pred CCeEEEEEEecC-----------cHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccccc
Confidence 99964 22111 1122333332222 234455566666666776665433211
Q ss_pred ----cCH-HHHHHHHHHhhc-cchHHHHHHHHHHHHHhHHHHHHHHH
Q 000798 276 ----LTF-QDAMSLMEQVFR-SPVVPFAFVLVLFFSNQIIAVNWNLS 316 (1279)
Q Consensus 276 ----~tl-~dAa~aLepvLG-g~~A~iLFAIGLLAAGqSSTITgTlA 316 (1279)
... .+++-++.|.+| ++|...+.+.|.||+..++.-.-++.
T Consensus 320 ~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~ 366 (529)
T COG4147 320 GDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLV 366 (529)
T ss_pred ccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHH
Confidence 111 445556777777 57777777777777776665443443
No 44
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.04 E-value=0.019 Score=68.85 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=159.4
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCchhHHHHHHHHHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGVQTEL 108 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVV-TGk~LAEicRe~YgK~~~~~LwI~aeL 108 (1279)
|+.+=.-+.|+||++-=..-|.+.|-+.+|.++-..+-++.+=-++ -+.+. +|.++. .+-++-||+.+.++.+.+-+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~-~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIE-DLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHH-HHhcccCcHHHHHHHHHHHH
Confidence 4444566899999999999999999999988888877777766555 44444 444544 44566788887777655444
Q ss_pred HHHHH-HHHH--HHHHHHHHHHhhC----ChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000798 109 SVILL-DLTM--VLGIAHGLNLLMG----VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLIS 181 (1279)
Q Consensus 109 AIIaa-DIaE--VIGiAIALnLLFG----IPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs 181 (1279)
++--. -+.= ...-.+++.-+++ +++++-.++....++.+.+ ...+-.+++.++..=+..++++ .++...+.
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~-~p~kivd~iGk~LTP~LL~~l~-ilii~~i~ 164 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSL-NPSKIVDRIGKFLTPILLILLA-ILIIKGIF 164 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33111 1110 1111222222344 3444444444444444332 2334556666655432222222 22222223
Q ss_pred CCChhh-hccccccccCC--C--hHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhhhhhHHHHHHHHHHHHHHH
Q 000798 182 QPEIPL-SVNGMLTKFSG--D--SAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMV 256 (1279)
Q Consensus 182 ~Pd~~e-Vl~GLVP~lp~--~--sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lgsfLI 256 (1279)
+|.-.. ...+-...-|. + .-|+.+=.+++.+---. ..++ .+++...+ +++..+....+-+.+.++.++|
T Consensus 165 ~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i-Ii~~--i~~~g~~~---~k~~~~~~~~ag~ia~~lL~~I 238 (427)
T PF05525_consen 165 SPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII-IINA--IRQKGYKD---KKEIKKYTIKAGLIAGILLALI 238 (427)
T ss_pred cCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH-HHHH--HHHhCCCC---HHHHHHHHHHHHHHHHHHHHHH
Confidence 443211 00111110010 0 12222322322221110 1111 12222111 1122233333222122334555
Q ss_pred HHHHHHHHHHhhccCCccccCHHHH-HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhhCCCcCCchH
Q 000798 257 NYVLMNSAANLFYSTGLVLLTFQDA-MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLS-GQVVLQDFLRLDIPGWLH 334 (1279)
Q Consensus 257 NlaVViVaAavLygtG~~V~tl~dA-a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlA-Gq~VmeGFL~lri~~w~R 334 (1279)
-..+.-++|..-..-+.. .+-.+. ..+-+..+| +.+.+++++..+.|.+.+++.-+-+ +++.-+-+ + + -.+
T Consensus 239 Y~gL~~lGa~~~~~~~~~-~~g~~lL~~i~~~~~G-~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-~-k---isY 311 (427)
T PF05525_consen 239 YGGLAYLGATSSGSFPDD-INGAELLSQIANHLFG-SAGQILLGIIVFLACLTTAIGLISACAEYFSELF-P-K---ISY 311 (427)
T ss_pred HHHHHHHccCCcccccCC-CCHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-c---cCh
Confidence 555666665432110111 222222 334456676 7899999999999999998865544 45554433 3 2 222
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000798 335 HATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 335 rLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr 387 (1279)
+....++++ .+.+++- . ++.+++.++-=+..+.=|.+++-++.-.-+|
T Consensus 312 ~~~v~i~~i-~S~~ian-~---Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~ 359 (427)
T PF05525_consen 312 KVWVIIFTI-FSFIIAN-L---GLDQIIKISVPILMFIYPVAIVLILLNLFDK 359 (427)
T ss_pred HHHHHHHHH-HHHHHHH-h---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 222222222 3333222 2 4666776776666777788777665443334
No 45
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.03 E-value=0.0051 Score=73.11 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=54.3
Q ss_pred hhccccchHHHHHHHHHhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHH
Q 000798 35 IGYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVI 111 (1279)
Q Consensus 35 iAyIDPGnIaT~lQAGA~FG---Y~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAII 111 (1279)
.+-+...++.+..... .+| ++-++.+++++++..++-.+.++.|.-||.+-.-..|..||.+.+.+..++-.+..+
T Consensus 25 ~~~~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~i 103 (442)
T TIGR00800 25 GAAFNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAI 103 (442)
T ss_pred HHhhhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHH
Confidence 3334444555544433 233 456778888999999999999999999999999999999998776655444333333
Q ss_pred H
Q 000798 112 L 112 (1279)
Q Consensus 112 a 112 (1279)
+
T Consensus 104 g 104 (442)
T TIGR00800 104 G 104 (442)
T ss_pred H
Confidence 3
No 46
>PRK11021 putative transporter; Provisional
Probab=98.03 E-value=0.062 Score=62.93 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=23.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 319 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~ 319 (1279)
.++++.+| +++..++.+..+.+.+++..+..++...
T Consensus 250 ~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR 285 (410)
T PRK11021 250 GIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFAR 285 (410)
T ss_pred HHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667776 5566677777777777777666665433
No 47
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.02 E-value=0.01 Score=71.08 Aligned_cols=45 Identities=9% Similarity=0.081 Sum_probs=36.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
.+++..+| .|..++.++.++.-+++|.+++.+-++...+-+++.+
T Consensus 324 ~af~~~~g-~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 324 QALSYGLG-SFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45777776 6888999999999999999999888887776655533
No 48
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.00 E-value=0.073 Score=62.88 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000798 63 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 63 LAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~L 102 (1279)
+..++++.+-||+.++-. +| +...-.++.+|+.++++.
T Consensus 52 ~~~~~a~~~aEl~s~~P~-~G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPT-AG-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 344566678888888765 23 566677888999877654
No 49
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.95 E-value=0.021 Score=68.19 Aligned_cols=37 Identities=3% Similarity=0.090 Sum_probs=23.2
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 319 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~ 319 (1279)
+.+...+|.+++..++.+.++.+.+++.++..++...
T Consensus 293 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR 329 (482)
T TIGR00907 293 QIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSR 329 (482)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666754666666666666767777766665433
No 50
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.91 E-value=0.061 Score=64.14 Aligned_cols=155 Identities=15% Similarity=0.113 Sum_probs=84.4
Q ss_pred hhHHHHHhhhccccchHHHHHHHHHhHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC---cHHHHHHhhcCchhHHHH
Q 000798 27 VLPVLLISIGYVDPGKWAVIIEGGAHFGFD-LVALMLVFNFAAIFCQYLSARIAVVTGK---DLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 27 lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~-LLWVLLLAtI~a~llQ~LAARLGVVTGk---~LAEicRe~YgK~~~~~L 102 (1279)
+|=-++++-..+|+|=+.-=.+++ ..||- .+-.++++-++.+..+++-.|.-.-+++ +..+..++++||+++++.
T Consensus 12 ~~~vl~l~gT~IGAGvL~lP~a~~-~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li 90 (415)
T COG0814 12 LGGVLILAGTAIGAGVLFLPVAFG-GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILI 90 (415)
T ss_pred HHHHHHHHccccccchhhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHH
Confidence 444455566678999888777766 33332 2233444555666666666666555444 799999999999999887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhC---ChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Q 000798 103 GVQTELSVILLDLTMVLGIAHGL----NLLMG---VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYV 175 (1279)
Q Consensus 103 wI~aeLAIIaaDIaEVIGiAIAL----nLLFG---IPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFV 175 (1279)
.+...+...+...+=.+|.+--+ .-.++ .+..+++++.++....+.++++ ....|... .++..++++|+
T Consensus 91 ~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~-~~~lk~ts---~l~~~~v~~~~ 166 (415)
T COG0814 91 GLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT-LAVLKITS---LLVFGKVIYLV 166 (415)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch-hHHHHHHH---HHHHHHHHHHH
Confidence 66655554443332222221111 11122 4555555544444444555543 33344433 33344555555
Q ss_pred HHHHhhCCChh
Q 000798 176 LGVLISQPEIP 186 (1279)
Q Consensus 176 i~l~vs~Pd~~ 186 (1279)
+..+.--|.|.
T Consensus 167 ~l~~~~~~~~~ 177 (415)
T COG0814 167 LLVVYLIPHWN 177 (415)
T ss_pred HHHHHHhcccC
Confidence 54454456654
No 51
>TIGR00909 2A0306 amino acid transporter.
Probab=97.89 E-value=0.088 Score=61.67 Aligned_cols=40 Identities=10% Similarity=-0.024 Sum_probs=27.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
+.++. +++++..+..++++.+.+++..+..++...++..+
T Consensus 269 ~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~ 308 (429)
T TIGR00909 269 VGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAM 308 (429)
T ss_pred HHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34554 45788788888888888888888777755444433
No 52
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.89 E-value=0.12 Score=61.78 Aligned_cols=68 Identities=12% Similarity=0.140 Sum_probs=35.9
Q ss_pred hHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHH-----HHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 28 LPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-----AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 28 GPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI-----~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+=.++..++-++-.++.+. |.+|...+...+++.+ .++.+-||+.++=. .| +...-.|+.+|+.+.+.
T Consensus 7 ~l~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 7 TLAIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 3344444455555555433 4556665533333333 34455556555432 22 56677888888876654
No 53
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.84 E-value=0.03 Score=67.13 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=44.4
Q ss_pred HHHHhhh--ccccchH-----HHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC-chhHHH
Q 000798 30 VLLISIG--YVDPGKW-----AVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVF 101 (1279)
Q Consensus 30 GfLvSiA--yIDPGnI-----aT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~Yg-K~~~~~ 101 (1279)
||+++++ .+|-||+ .++..+|+.|=---+-.+++.-+..++.... +|--++++..+..|+--+ |++.++
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~---iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFA---IGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHH---hhhhcCCChhHHHHHhccCccchhh
Confidence 5555554 6999997 4566667665433333333334444444444 555677888888887665 677776
Q ss_pred HHHHH
Q 000798 102 IGVQT 106 (1279)
Q Consensus 102 LwI~a 106 (1279)
-|+.+
T Consensus 90 G~~gv 94 (439)
T COG0733 90 GWFGV 94 (439)
T ss_pred hhHHH
Confidence 66543
No 54
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.83 E-value=0.086 Score=62.12 Aligned_cols=121 Identities=13% Similarity=0.232 Sum_probs=77.1
Q ss_pred HHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHH-H--H-HHHHHHHHHHHHhcC----CcHHHHHHhhcCc-hhHH
Q 000798 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-A--A-IFCQYLSARIAVVTG----KDLAQICGEEYDK-WTCV 100 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI-~--a-~llQ~LAARLGVVTG----k~LAEicRe~YgK-~~~~ 100 (1279)
++..++.|+.+++.... -||.|.|.|-|++| +++ + . +.+-.++-|+..... .++-+.+|.||-. ...|
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlL-a~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~ 123 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLL-AMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVW 123 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHH-HHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHH
Confidence 34445566666666554 36778888999544 332 1 1 111222333333322 2477788888754 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccc
Q 000798 101 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 101 ~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy 153 (1279)
+..+...+..+.....+++|.|=-++...|+|.-.|.+++++.+.+..++|.+
T Consensus 124 las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 124 LASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcce
Confidence 44444555555556678999998888888999999999999999888888754
No 55
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.83 E-value=0.0017 Score=76.46 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=51.3
Q ss_pred hhhccccchHHHHHHHHHhHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHH
Q 000798 34 SIGYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 110 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAGA~FG---Y~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAI 110 (1279)
..+-+-..++.+.... ..+| ++-+..++++++++.++-.+.+++|.-||.+-....|..||.+.+.+..+...+..
T Consensus 19 ~~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~ 97 (440)
T PF02133_consen 19 FGANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISA 97 (440)
T ss_dssp CHHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHH
Confidence 3344555555555554 4555 34667788899999999999999999999999999999999877666544433443
Q ss_pred HH
Q 000798 111 IL 112 (1279)
Q Consensus 111 Ia 112 (1279)
++
T Consensus 98 ig 99 (440)
T PF02133_consen 98 IG 99 (440)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 56
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.82 E-value=0.16 Score=61.15 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000798 64 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 64 AtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~L 102 (1279)
+.+.++.+-||+.++-. +| +...-.++.||+.+.++.
T Consensus 90 ~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~~ 126 (501)
T TIGR00911 90 SIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFLR 126 (501)
T ss_pred HHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHHH
Confidence 34445555666665532 22 566677788998876543
No 57
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.81 E-value=0.16 Score=60.66 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=23.9
Q ss_pred HhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 287 QVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 287 pvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
+.+|.++...++.++++.+.+++..+..++...++
T Consensus 282 ~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 316 (478)
T TIGR00913 282 QNHGIKVLPHIFNAVILISVLSAANSSLYASSRTL 316 (478)
T ss_pred HHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34565677777777777777787777776654443
No 58
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.80 E-value=0.17 Score=60.64 Aligned_cols=39 Identities=13% Similarity=0.092 Sum_probs=28.9
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 282 a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
..++++.+| +++..++.++++.+.+++..+.++++..++
T Consensus 267 ~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~~ 305 (468)
T TIGR03810 267 AYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLPAEIP 305 (468)
T ss_pred HHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667666 788888888888888888888877754433
No 59
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.74 E-value=0.15 Score=60.41 Aligned_cols=38 Identities=11% Similarity=-0.096 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 62 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 62 LLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
++..+.++.+-||+.++=.. | +...-.++.||+.+.++
T Consensus 54 v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 44556667777787776432 2 33345667788876654
No 60
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.74 E-value=0.054 Score=65.07 Aligned_cols=279 Identities=13% Similarity=0.106 Sum_probs=138.9
Q ss_pred hhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----Cc-----HHHHHHhhcCchhHHHHHH
Q 000798 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTG----KD-----LAQICGEEYDKWTCVFIGV 104 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTG----k~-----LAEicRe~YgK~~~~~LwI 104 (1279)
.++-+|.||++--..|=+-=|-.-+..+.+..++++...+.=.-|++.-. ++ .+--+.+-++ .+|+..+
T Consensus 73 la~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~--~r~l~v~ 150 (452)
T COG1115 73 LAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLG--MRWLAVL 150 (452)
T ss_pred HHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcC--CcHHHHH
Confidence 34469999998877776666777666677777777766665544444321 11 1111222222 2333333
Q ss_pred HHHHHHHH-H----HHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 105 QTELSVIL-L----DLTMVLGIAHGLNLLMGVEL-STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGV 178 (1279)
Q Consensus 105 ~aeLAIIa-a----DIaEVIGiAIALnLLFGIPL-~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l 178 (1279)
++ +++++ . +..+.-.++-+++--||+|. ..|+.++++..+++ + .|.+++-++...++=+|++.|++..
T Consensus 151 FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI--~---GGi~rIa~v~~~vVPfMA~~Yi~~~ 224 (452)
T COG1115 151 FA-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVI--F---GGIKRIAKVSSKVVPFMAILYVLVA 224 (452)
T ss_pred HH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--H---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 22222 1 22334456777888899974 55666655544333 3 3678888877777778888888754
Q ss_pred Hhh-CCCh---hhhccccccccCCChHHHHHHHhcccchhHHHH-HhHHhhhhc-cccc-cccchhhh-----hhHHHHH
Q 000798 179 LIS-QPEI---PLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFY-LHSSIVRRH-QGQV-NISKGALC-----HDHFFAI 246 (1279)
Q Consensus 179 ~vs-~Pd~---~eVl~GLVP~lp~~sl~~aVAIIGATIMPhNfY-LHSaLVqsR-~~~~-~~~~~a~~-----~D~~~~i 246 (1279)
+.. --+. +.++.-.+ +--.+.-..+-|.+|++++--..+ ..-++-... .-.. .....+.. +.-+..
T Consensus 225 ~~Ii~~n~~~iP~~i~~If-~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~QGlv~- 302 (452)
T COG1115 225 LVIIVLNISQIPAVIALIF-SSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQGLVQ- 302 (452)
T ss_pred HHHHHhhHhhhHHHHHHHH-HhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHHhHHH-
Confidence 431 1111 11111111 000011112446666655433221 111111000 0000 00000000 111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCc----c-ccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 247 LCIFSGIYMVNYVLMNSAANLFYSTGL----V-LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 247 l~i~lgsfLINlaVViVaAavLygtG~----~-V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
+++.|+-++.+..+.|.++--+|. . +...+=...+++..+| +|..++.++++++-+++|.+.+-|-++..+
T Consensus 303 ---~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g-~~G~~fv~i~l~lFafTTIlg~yyyge~~~ 378 (452)
T COG1115 303 ---MLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG-SWGSYFVAIALFLFAFTTILGWYYYGEKNI 378 (452)
T ss_pred ---HhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123333233333333322211221 1 1122212245888887 799999999999999999999988888877
Q ss_pred HhhhC
Q 000798 322 QDFLR 326 (1279)
Q Consensus 322 eGFL~ 326 (1279)
+=..+
T Consensus 379 ~fl~~ 383 (452)
T COG1115 379 EFLFG 383 (452)
T ss_pred HHHhC
Confidence 65553
No 61
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.73 E-value=0.037 Score=66.54 Aligned_cols=113 Identities=9% Similarity=0.057 Sum_probs=69.9
Q ss_pred HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 51 AHFGFDLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI-GVQTELSVILLDLTMVLGIAHGLNL 127 (1279)
Q Consensus 51 A~FGY~LLWVLLLAtI~a~llQ~LAARLGVV--TGk~LAEicRe~YgK~~~~~L-wI~aeLAIIaaDIaEVIGiAIALnL 127 (1279)
+..|-..+-+-+++-++.+++.+.-+-+-+. +-.+....+++.+|++..++. |.. -+.-+..-++|+.++++=++.
T Consensus 42 ~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~Y-W~~wv~v~~ae~tAi~~y~~~ 120 (462)
T COG1113 42 AMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTY-WFFWVLVGIAELTAIGIYLQF 120 (462)
T ss_pred hhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555556666777777776666666 244799999999999876543 111 122233344566677776777
Q ss_pred hh-CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 000798 128 LM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 128 LF-GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~l 165 (1279)
-| ++|.|+.+++..+....+=++ +-+.+..+|+.+++
T Consensus 121 WfP~vP~Wv~al~~~~l~~~~NL~-sVk~FGE~EfWfAl 158 (462)
T COG1113 121 WFPDVPQWVFALAAVVLLLAVNLI-SVKVFGELEFWFAL 158 (462)
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 77 679999888766655444333 22455667876543
No 62
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.64 E-value=0.2 Score=60.54 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=56.9
Q ss_pred HHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHH
Q 000798 29 PVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 108 (1279)
Q Consensus 29 PGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeL 108 (1279)
=|+.+=.-+.|+||++-=..-|.+.|-+..|.++-.++-++.+=-++.=-...+|-++. .+-++.||+...++.+.+-+
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~-~l~~rv~~~f~~~f~~~i~l 91 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVD-SLSTPIGKVAGVLLATVCYL 91 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-HHhhhcchHHHHHHHHHHHH
Confidence 36666677999999999999999999988888888877777766665444444553444 44556788877766554443
Q ss_pred H
Q 000798 109 S 109 (1279)
Q Consensus 109 A 109 (1279)
+
T Consensus 92 ~ 92 (439)
T PRK15433 92 A 92 (439)
T ss_pred H
Confidence 3
No 63
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.52 E-value=0.4 Score=57.30 Aligned_cols=35 Identities=11% Similarity=0.067 Sum_probs=23.3
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000798 289 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 289 LGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
+|++++..++.++++.+.+++..+..+++..++-.
T Consensus 260 ~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a 294 (446)
T PRK10197 260 LNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYS 294 (446)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777777777777777766765444433
No 64
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.51 E-value=0.4 Score=57.01 Aligned_cols=38 Identities=5% Similarity=-0.104 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 62 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 62 LLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+.+.++++.+-||+.++=. +| +...-.++.||+.++++
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4555666777778777642 33 56667888899987654
No 65
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.48 E-value=0.38 Score=56.11 Aligned_cols=43 Identities=5% Similarity=0.043 Sum_probs=29.5
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 282 a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
...+.+..|+++...++.++++.+.+.+..+...+...++..+
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~ 302 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAM 302 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhccccc
Confidence 3334444455788889999998888888888877765444333
No 66
>PRK10655 potE putrescine transporter; Provisional
Probab=97.27 E-value=0.71 Score=54.64 Aligned_cols=33 Identities=9% Similarity=-0.031 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 67 AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 67 ~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+++.+-|++.++=. +| +...-.++.||+.+.++
T Consensus 54 ~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 54 LAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 35555666655422 23 45677788899876654
No 67
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=97.04 E-value=1.1 Score=52.60 Aligned_cols=34 Identities=9% Similarity=-0.109 Sum_probs=23.0
Q ss_pred HHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000798 285 MEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 319 (1279)
Q Consensus 285 LepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~ 319 (1279)
+....| .+...+..++.+.+.+++.++...+...
T Consensus 278 ~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR 311 (466)
T COG0531 278 ALFGGG-NWGAIIIAILALLSLFGSLLAWILAVSR 311 (466)
T ss_pred HHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333 5777788888888888887777766433
No 68
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.99 E-value=0.2 Score=61.65 Aligned_cols=163 Identities=13% Similarity=0.116 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCccccC--HHHHHHHHHHhhccchHH---HHHHHHHHHHHhHHHHHHHHH-HHHHHHhh
Q 000798 252 GIYMVNYVLMNSAANLFYS-TGLVLLT--FQDAMSLMEQVFRSPVVP---FAFVLVLFFSNQIIAVNWNLS-GQVVLQDF 324 (1279)
Q Consensus 252 gsfLINlaVViVaAavLyg-tG~~V~t--l~dAa~aLepvLGg~~A~---iLFAIGLLAAGqSSTITgTlA-Gq~VmeGF 324 (1279)
..+++..+++++-+..+-. ....+.+ -+-..+.+.+.+|...+- .+-.+.+|..|+++.++.+=. ..+.=+|-
T Consensus 295 i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~ 374 (550)
T KOG1289|consen 295 IGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGG 374 (550)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCC
Confidence 3455566666665555521 1111121 234566788888865552 233355566666665544321 12222332
Q ss_pred hCCCcCCch----------HHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccccC
Q 000798 325 LRLDIPGWL----------HHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR--QIMGV 392 (1279)
Q Consensus 325 L~lri~~w~----------RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr--~IMGe 392 (1279)
+ +.++|. ..+++..+.+.-.+.+..+.+......++ +-++.++.+-+++--++++.-.| =.-|+
T Consensus 375 L--P~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alf--s~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp 450 (550)
T KOG1289|consen 375 L--PFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALF--SAAAIALFIAYAIPIFCRLFFGRDDFRPGP 450 (550)
T ss_pred C--CCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHHHHhHHhheeecccccCCCC
Confidence 2 222221 22333222222222222233322222222 12222233333332222333333 34477
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHH
Q 000798 393 HKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 393 frNs~~~nILawii~llIi~LNIyfV 418 (1279)
+..+++.+...+++++.+++.-+.+.
T Consensus 451 ~~lGk~s~p~~~i~v~w~lf~~vil~ 476 (550)
T KOG1289|consen 451 FNLGKFSKPIGIIAVLWVLFMIVILC 476 (550)
T ss_pred ccccccccchHHHHHHHHHHHHHHHh
Confidence 88888888888777666655544444
No 69
>PRK10836 lysine transporter; Provisional
Probab=96.78 E-value=2.1 Score=51.83 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=22.8
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
++.+. |.+++..++.++++.+.+++.....+++..++
T Consensus 287 ~~~~~-g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 287 VFQHA-GLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 44556667777777777777777777654443
No 70
>PLN03074 auxin influx permease; Provisional
Probab=96.72 E-value=1.6 Score=53.36 Aligned_cols=62 Identities=10% Similarity=0.027 Sum_probs=32.6
Q ss_pred HHHhhhCCC-cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 320 VLQDFLRLD-IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 320 VmeGFL~lr-i~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~L 383 (1279)
+.|..++.+ .+....|++.|.+.++.+.+++.. .+.+..++.+...+....+-|.+=+++++
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~--IP~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAII--FPFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445544432 122334566777777777776653 23345555555555555554444445554
No 71
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=96.63 E-value=2.6 Score=50.93 Aligned_cols=74 Identities=14% Similarity=0.175 Sum_probs=55.5
Q ss_pred HHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHH
Q 000798 29 PVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIG 103 (1279)
Q Consensus 29 PGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~Lw 103 (1279)
=|++.=+-+.|+||++-=-..|...|....|.++-..+-++.+=-+..=-....|++.-+.- ++-+||...++-
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f~ 83 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLFA 83 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHHH
Confidence 35666667899999999999999999998888877777777666666555566788766554 457887776553
No 72
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.56 E-value=2.2 Score=49.19 Aligned_cols=105 Identities=12% Similarity=0.019 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCchhHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHhhCChh
Q 000798 61 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFI-GVQT-----ELSVILLDLTMVLGIAHGLNLLMGVEL 133 (1279)
Q Consensus 61 LLLAtI~a~llQ~LAARLGVV-TGk~LAEicRe~YgK~~~~~L-wI~a-----eLAIIaaDIaEVIGiAIALnLLFGIPL 133 (1279)
++++.++++++-.+-++++.. -|+++.|..++.+||+..+++ |+.. ..+.+..+.++++- ..++-..|.
T Consensus 40 ~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~tp~ 115 (359)
T TIGR00912 40 IILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----TYLLPRTPI 115 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCCCCH
Confidence 344445554444445555433 378999999999999877653 2221 11122222232221 122224577
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHH
Q 000798 134 STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 134 ~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLs 173 (1279)
++.+++..+.+... .+.|.+.+.++..++..++.+.
T Consensus 116 ~~~~l~~l~~~~~~----~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 116 IVIIILIIIVSIYI----VRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHHHHHHH----HHccHHHHHHHHHHHHHHHHHH
Confidence 66554444333222 2346677665544443334444
No 73
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.52 E-value=3.6 Score=51.16 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=26.2
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
++.. .|.+++..++.+|++.+..++.++..++...++
T Consensus 304 a~~~-~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 304 AFEY-VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred HHHH-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 455788888889988888888887777654433
No 74
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=96.45 E-value=3.3 Score=49.96 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 57 LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 57 LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
++...+...++++.+-||+.++=. +| +...-.++-+|+.+.++
T Consensus 53 ~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 53 WPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 333344445556666777776642 23 45566677788866554
No 75
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=96.39 E-value=3.7 Score=49.92 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=35.4
Q ss_pred HHHHhhhccccchHHHHHH-HHHhHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 30 VLLISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVFNF----AAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 30 GfLvSiAyIDPGnIaT~lQ-AGA~FGY~LLWVLLLAtI----~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
..+...+-++-+++..... +|. -.++|.++.+.+ .++.+-||+.++=-.+| +.-.-.++-+|+.+.++
T Consensus 15 ~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf~ 87 (496)
T PRK15238 15 ILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAFI 87 (496)
T ss_pred HHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHHH
Confidence 3333334445566554332 332 134444444433 44455666665332223 67778888899877754
No 76
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.37 E-value=0.77 Score=56.24 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=35.4
Q ss_pred ccccchHHHHHHHHHhHh-HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC
Q 000798 37 YVDPGKWAVIIEGGAHFG-FD-LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 95 (1279)
Q Consensus 37 yIDPGnIaT~lQAGA~FG-Y~-LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~Yg 95 (1279)
.+|.||+-.--.--.++| -. |+--++...++++++-.+=.-+|-.++++..+..++--|
T Consensus 18 ~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p 78 (523)
T PF00209_consen 18 AVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCP 78 (523)
T ss_dssp HSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 488888766544333332 11 333345555666776666666788888888887754444
No 77
>PRK09928 choline transport protein BetT; Provisional
Probab=96.15 E-value=3.9 Score=52.16 Aligned_cols=86 Identities=27% Similarity=0.365 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC------CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 000798 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFT 365 (1279)
Q Consensus 292 ~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l------ri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~a 365 (1279)
|++.++-. ..+...+...+|...++.+++..+-.. +.++|.| ++|.++..+-++.+....|.+ ..|
T Consensus 406 P~~~i~~~-l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~R-ifW~v~ig~la~~LL~~GGL~-aLQ----- 477 (679)
T PRK09928 406 PAFTFSAS-VATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLR-VFWSVAIGLLTLGMLMTNGIS-ALQ----- 477 (679)
T ss_pred cHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCccee-eHHHHHHHHHHHHHHHhcCHH-HHH-----
Confidence 54444333 333444667778888888888877432 3345544 445433322222222222321 222
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000798 366 QVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 366 QVl~SL~LPFALIPLL~LtN 385 (1279)
.+.....|||.++-++...+
T Consensus 478 t~sii~alPf~~I~ll~~~s 497 (679)
T PRK09928 478 NTTVIMGLPFSFVIFFVMAG 497 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22233668888877665533
No 78
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=96.12 E-value=0.065 Score=64.01 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=23.2
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 000798 289 FRSPVVPFAFVLVLFFSNQIIAVNWNLSG 317 (1279)
Q Consensus 289 LGg~~A~iLFAIGLLAAGqSSTITgTlAG 317 (1279)
.|+++...++.++++.+.+++.....++.
T Consensus 283 ~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 283 SGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred cccccccceecccchhhhhhhhhhhhccc
Confidence 45578888888899998888888877764
No 79
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.04 E-value=4.9 Score=47.97 Aligned_cols=37 Identities=14% Similarity=-0.024 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 62 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 62 LLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
+.+.++++.+.||+.++=. +| +...-.++ +|+.+.++
T Consensus 48 ~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 48 IGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 4455667778888888754 44 56666666 78766554
No 80
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.99 E-value=6.2 Score=48.73 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=42.6
Q ss_pred cchHHHHHHHHHhHhHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhH
Q 000798 40 PGKWAVIIEGGAHFGFD-----LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTC 99 (1279)
Q Consensus 40 PGnIaT~lQAGA~FGY~-----LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~ 99 (1279)
.=|+-+..-++.-+... -+-.+++++++.+++..+.+|-|..+|-+....+|.-||-+.+
T Consensus 54 ~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga 118 (497)
T COG1953 54 VHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGA 118 (497)
T ss_pred hccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhh
Confidence 33444444444443333 3345677778888888899999999999999999999986544
No 81
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=95.77 E-value=8 Score=48.30 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=37.1
Q ss_pred HHHHhHhH--HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHH
Q 000798 48 EGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 48 QAGA~FGY--~LLWVLLLAtI~a~llQ~LAARLGVV--TGk~LAEicRe~YgK~~~~~ 101 (1279)
..+|+||| .+||+++ .++++-.+|.+-.=.--+ -||++.|+.+++.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 46789996 6888765 555555566554333222 49999999999999977654
No 82
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.68 E-value=0.5 Score=56.02 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=41.1
Q ss_pred HHHHHHHHHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHHH
Q 000798 43 WAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 43 IaT~lQAGA~FGY~--LLWVLLLAtI~a~llQ~LAARLGVV--TGk~LAEicRe~YgK~~~~~L 102 (1279)
+.--+.| +.|||- +||+++-..+ .-.+|.+.+=..-+ -||++.|+++++.||..+.++
T Consensus 71 I~GPi~a-a~~GwlPa~lWI~~G~if-~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 71 IVGPILA-AQFGWLPALLWIVFGCIF-AGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred chHHHHH-HHhcchHHHHHHHHccHH-HHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 4444555 999996 8887655554 45556655555444 599999999999999877654
No 83
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.44 E-value=0.94 Score=56.44 Aligned_cols=36 Identities=8% Similarity=-0.020 Sum_probs=29.1
Q ss_pred hccchHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000798 289 FRSPVVPF---AFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 289 LGg~~A~i---LFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
.+..++++ ++.++++.+..++...+.+++..++-.+
T Consensus 312 i~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 312 IGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 34566788 9999999999999999999987665555
No 84
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=95.03 E-value=13 Score=46.08 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC--CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 000798 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL--DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 369 (1279)
Q Consensus 292 ~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l--ri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~ 369 (1279)
|++. +..+..+...+...+|...++.+++..+-.. +.++...|+++.++..+-++.+....|.+ ..|- +..
T Consensus 389 P~~~-i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~-~lq~-----~~i 461 (485)
T PF02028_consen 389 PLSK-ILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLD-ALQS-----ASI 461 (485)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSH-HHHH-----HHH
T ss_pred hHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHH-HHHH-----HHH
Confidence 5554 3344444444666777777777777776432 23344455556543333333333444543 3332 222
Q ss_pred HHHHHHHHHHHHHHHh
Q 000798 370 AIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 370 SL~LPFALIPLL~LtN 385 (1279)
...+||.++.++...+
T Consensus 462 i~~lP~~~v~~~~~~~ 477 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888877765543
No 85
>PRK15015 carbon starvation protein A; Provisional
Probab=94.87 E-value=17 Score=46.58 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=37.3
Q ss_pred HHhHhHH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHH
Q 000798 50 GAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 50 GA~FGY~--LLWVLLLAtI~a~llQ~LAARLGVV--TGk~LAEicRe~YgK~~~~~ 101 (1279)
.++|||- +||+++ .+++.-.+|.+.+=..-+ -||++.|++|++.|+..+.+
T Consensus 108 Aa~~GwlP~~LWIl~-G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 108 AAQMGYLPGMIWLLA-GVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred HHHHcchHHHHHHHH-cceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 3489994 888765 455555677776655544 59999999999999976643
No 86
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=94.17 E-value=19 Score=44.18 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=37.7
Q ss_pred HHHhhhCCCcC-----CchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 320 VLQDFLRLDIP-----GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 320 VmeGFL~lri~-----~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtN 385 (1279)
++|...+.+.+ ....|++.|...+++++.++...- -...++.+...+....+.+.+-+++++.-
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~P--fFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFP--FFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhcc--ccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554433 223567788888888887776432 23455666666666666666656666544
No 87
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.04 E-value=14 Score=42.30 Aligned_cols=116 Identities=17% Similarity=0.172 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCchhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhhCChh
Q 000798 61 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGVQ------TELSVILLDLTMVLGIAHGLNLLMGVEL 133 (1279)
Q Consensus 61 LLLAtI~a~llQ~LAARLGVV-TGk~LAEicRe~YgK~~~~~LwI~------aeLAIIaaDIaEVIGiAIALnLLFGIPL 133 (1279)
++++.++++++-.+..+++-- -|+++.|..++.+||+...++.+. ...+......++++.. .++-..|.
T Consensus 38 ~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~TP~ 113 (320)
T PF03845_consen 38 VLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPETPI 113 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcCCH
Confidence 566667777777777777765 899999999999999877653222 2222222233333322 22335688
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 000798 134 STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPE 184 (1279)
Q Consensus 134 ~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd 184 (1279)
++..++..+.++... ++|.+.+-+....++.++.+.+++..+..-++
T Consensus 114 ~~i~~~~ll~~~y~a----~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~ 160 (320)
T PF03845_consen 114 WVIILLFLLVAAYAA----RKGIEVIARVAEILFPIFLILLLLILLLSIPN 160 (320)
T ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 877666555544332 34666665433333333333333333333343
No 88
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=93.80 E-value=22 Score=45.53 Aligned_cols=70 Identities=19% Similarity=0.289 Sum_probs=50.3
Q ss_pred HHhhhhHHHHHhhhc-cccchHH-----HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC
Q 000798 23 LVPAVLPVLLISIGY-VDPGKWA-----VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 95 (1279)
Q Consensus 23 lLa~lGPGfLvSiAy-IDPGnIa-----T~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~Yg 95 (1279)
.|+--.=.++-++|+ +|-||+- .+-.+|..| |+--+++..++++++..|=.-+|-.|+++-....|+--|
T Consensus 36 ~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaF---LIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~P 111 (629)
T KOG3660|consen 36 NWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAF---LIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICP 111 (629)
T ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchH---HHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhCh
Confidence 333333446667776 9999987 333444343 555577778888888888899999999999999986544
No 89
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=93.13 E-value=26 Score=43.70 Aligned_cols=87 Identities=17% Similarity=0.116 Sum_probs=43.7
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC--C---CcCCchHHHHHHHHH-HHHHHHHHHhcCchhHHHHHHHH
Q 000798 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR--L---DIPGWLHHATIRIIS-IVPALYCVWTSGAEGVYQLLIFT 365 (1279)
Q Consensus 292 ~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~--l---ri~~w~RrLitRlIA-IIPALiVal~~G~~~l~qLLI~a 365 (1279)
|++. +..+..+...+...+|..+++.+++..+-. . ..++...|+++.++. +++..+ . +.|.-...|
T Consensus 402 Pl~~-i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~L-l-~~GGl~~lQ----- 473 (504)
T PRK03356 402 PLST-ATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVL-L-ALGGLKPIQ----- 473 (504)
T ss_pred cHHH-HHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHH-H-HhcCHHHHH-----
Confidence 4444 333333444466677788888887776632 2 123344455554433 333322 2 333111222
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 000798 366 QVMVAIMLPSSVIPLFRVASS 386 (1279)
Q Consensus 366 QVl~SL~LPFALIPLL~LtNs 386 (1279)
.+.....+||.++-++...+-
T Consensus 474 t~sii~alPf~~i~~l~~~sl 494 (504)
T PRK03356 474 TAIIAGGCPLFFVNIMVTLSF 494 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 222336689998887766553
No 90
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=93.07 E-value=31 Score=43.30 Aligned_cols=137 Identities=9% Similarity=0.046 Sum_probs=70.1
Q ss_pred hhHHHHHhhhccccchHHHHH-HHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHh-hcCchhHHHH
Q 000798 27 VLPVLLISIGYVDPGKWAVII-EGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK--DLAQICGE-EYDKWTCVFI 102 (1279)
Q Consensus 27 lGPGfLvSiAyIDPGnIaT~l-QAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk--~LAEicRe-~YgK~~~~~L 102 (1279)
+|.|++++.|. -.... =+|+--+|-+.-++++.+ +.-+=||+.-+= ++|- +.+.-+-+ -+|--..|..
T Consensus 60 IGTGLfvgsG~-----~l~~aGP~g~li~y~i~G~~vy~v--m~sLGEma~~~P-~sGsF~~ya~rfvdpa~GFa~gWnY 131 (541)
T COG0833 60 IGTGLFVGSGK-----ALSQAGPAGLLIAYLIIGIMVYFV--MQSLGELAVFYP-VSGSFSTYATRFVDPAFGFALGWNY 131 (541)
T ss_pred cccceeeecch-----hhhccCcHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC-CCCchhhhhhhhcCchHHHHHHHHH
Confidence 77888766553 22221 345666666665555443 334557787777 6662 22222211 1222223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Q 000798 103 GVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVL 176 (1279)
Q Consensus 103 wI~aeLAIIaaDIaEVIGiAIALnLLF--GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi 176 (1279)
|+.- +..++ .|++.+++-++.-+ .+|.++++.+..+..+++=+++- +++-..|+++..+=.++++.|++
T Consensus 132 w~~w-~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~V-k~fGE~Efw~s~iKV~~ii~Fii 202 (541)
T COG0833 132 WLNW-AVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGV-KGFGETEFWFSSIKVLTIIGFII 202 (541)
T ss_pred HHHH-HHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcc-cccceehHHHHHHHHHHHHHHHH
Confidence 3321 22222 35556777777665 34888777776666665555543 34555677655433344444444
No 91
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=92.51 E-value=5.1 Score=50.97 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000798 278 FQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 325 (1279)
Q Consensus 278 l~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL 325 (1279)
+++-++.+.++ ..-+++..+|+++++++|.|.+.++...+.+..-
T Consensus 358 Lq~dy~v~~~i---sl~p~fi~iGi~sttlfss~s~liGasrvL~ala 402 (945)
T KOG1288|consen 358 LQNDYDVMMHI---SLHPPFILIGILSTTLFSSMSGLIGASRVLEALA 402 (945)
T ss_pred hhhchhheeec---cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 44545555554 3446788899999999999999999988888763
No 92
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.13 E-value=2.5 Score=53.06 Aligned_cols=335 Identities=12% Similarity=0.126 Sum_probs=150.8
Q ss_pred hhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHH
Q 000798 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL----SARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 110 (1279)
Q Consensus 35 iAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~L----AARLGVVTGk~LAEicRe~YgK~~~~~LwI~aeLAI 110 (1279)
+.++..+++..-...|+.||.+.+|+-+-+.+...+.-.. --|.++. +.-|-.+.||++..+.+ |.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l-~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYL-ATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhh-HHHHHHHH
Confidence 4567777888888889999998887765554443332221 1233443 34566777888774432 22222222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHHHHHHhccchh---HHHHHHHHHHHHHHHHHHHHHHHHhhCCChh
Q 000798 111 ILLDLTMVL-GIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE---NYKAKLLWICTAGIILLSYVLGVLISQPEIP 186 (1279)
Q Consensus 111 IaaDIaEVI-GiAIALnLLFGIPL~~gVLITavdt~LLL~lgsy~g---~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~~ 186 (1279)
+..-+..++ --|++++..+|+.++..++++.+.|.+...++.-.. -+-+..++++...+++..+.. .-+.+. .
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt-~~vGG~--~ 210 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGT-MKVGGL--G 210 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHHHHHHHHHHhheee-hhcCcc--c
Confidence 222222111 246788888898877666666666655555432100 133344333221111111111 111111 1
Q ss_pred hhc-----cc--ccc-ccCC---ChHHHHHHHhcccchhHHHH-HhHHhhhhccccccccchhhhhhHHHHHHHHHHHHH
Q 000798 187 LSV-----NG--MLT-KFSG---DSAFSIMSLLGASMMPHNFY-LHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIY 254 (1279)
Q Consensus 187 eVl-----~G--LVP-~lp~---~sl~~aVAIIGATIMPhNfY-LHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lgsf 254 (1279)
.+. .| -++ .+.. -.....-.++|.++|---.| .+-..||.--.-+. .++++.-.+ .+...+
T Consensus 211 ~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~s--lk~ak~~~~-----~~~~~~ 283 (585)
T KOG2349|consen 211 RVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPS--LKHAKPSLL-----LFGYGV 283 (585)
T ss_pred ceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhcccc--HHHhhhhhh-----hhhhHH
Confidence 110 11 112 1111 11112238899998876555 55556654322222 112222111 011123
Q ss_pred HHHHHHHHHHHHhhccC--Ccc------ccCHHHHHHH-HHHhhcc-chHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHh
Q 000798 255 MVNYVLMNSAANLFYST--GLV------LLTFQDAMSL-MEQVFRS-PVVPFAFVLVLFFSNQIIAVNWNLS-GQVVLQD 323 (1279)
Q Consensus 255 LINlaVViVaAavLygt--G~~------V~tl~dAa~a-LepvLGg-~~A~iLFAIGLLAAGqSSTITgTlA-Gq~VmeG 323 (1279)
++..++++.-+.+.|.. +.+ +....++.-. -.+.+|. +-.+-+|.-++|+|+.||.-+..-+ +..+.++
T Consensus 284 ~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~eD 363 (585)
T KOG2349|consen 284 LLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLED 363 (585)
T ss_pred HHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCCCccchhHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 44444544444443321 111 1111222211 1222220 2245688888888887765443222 3456677
Q ss_pred hhCCCcC-CchHH--HHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 000798 324 FLRLDIP-GWLHH--ATIRIISIVPALYC-VWTSGAEGVYQLLIFTQVMVAIMLP-SSVIPLFRV 383 (1279)
Q Consensus 324 FL~lri~-~w~Rr--LitRlIAIIPALiV-al~~G~~~l~qLLI~aQVl~SL~LP-FALIPLL~L 383 (1279)
+.+...+ ..-++ .+.|++.++-.+++ ++.+..+.+.+++..++.+.++.-| .+.++++-+
T Consensus 364 ~ik~~~k~~se~~~~~~~r~~vvv~G~~si~~~fvv~~~~~vlq~~~si~g~~~gP~~gvF~Lgm 428 (585)
T KOG2349|consen 364 YIKPLRKPLSERELNIAMRLFVVVLGLISIGLAFVVELLQQVLQYSQSIFGYLGGPLLGVFVLGM 428 (585)
T ss_pred HHHhhcCCcChHHHhhhhheeeeeehhHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 7654322 11122 23333332222222 2223333455777777777775544 444555544
No 93
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=91.71 E-value=45 Score=41.95 Aligned_cols=82 Identities=23% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhhC---CCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 000798 297 AFVLVLFFSNQIIAVNWNLSGQVVLQDFLR---LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIML 373 (1279)
Q Consensus 297 LFAIGLLAAGqSSTITgTlAGq~VmeGFL~---lri~~w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~L 373 (1279)
+.++.++.....=.+|..+++.+++...-- .+.++|.|..--.+++++++.+ ++.|.-...| .+.....|
T Consensus 406 v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~l--L~~ggl~aLq-----t~~ii~al 478 (537)
T COG1292 406 LTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVL--LLIGGLEALQ-----TAAIITAL 478 (537)
T ss_pred HHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHH--HHhCCHHHHH-----HHHHHHHc
Confidence 333333333344456677888888766632 2334555543222344444443 2334201111 22233668
Q ss_pred HHHHHHHHHHHh
Q 000798 374 PSSVIPLFRVAS 385 (1279)
Q Consensus 374 PFALIPLL~LtN 385 (1279)
||+++-++...+
T Consensus 479 PF~~vll~~~~s 490 (537)
T COG1292 479 PFSLVLLVMMFS 490 (537)
T ss_pred cHHHHHHHHHHH
Confidence 998887665433
No 94
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=88.89 E-value=93 Score=41.12 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.6
Q ss_pred HHHHhcccchhHHHHHhHHhhh
Q 000798 204 IMSLLGASMMPHNFYLHSSIVR 225 (1279)
Q Consensus 204 aVAIIGATIMPhNfYLHSaLVq 225 (1279)
..-++||++.|-.-.+.+++++
T Consensus 132 ~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 132 ASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHhhhcCCcHHHHHHHHh
Confidence 4557889999887777777765
No 95
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=87.74 E-value=76 Score=38.75 Aligned_cols=52 Identities=12% Similarity=0.162 Sum_probs=29.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchh
Q 000798 45 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWT 98 (1279)
Q Consensus 45 T~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~ 98 (1279)
+-.++|--+|.-++-.+.+.+...+.++.-+++.+-.. +.++.++..+|+..
T Consensus 30 afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 30 AFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred HHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 34556656666666666666666665554444443333 56666666667654
No 96
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=86.51 E-value=94 Score=38.55 Aligned_cols=72 Identities=7% Similarity=0.075 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCCchHHHHHHHHHHHHH
Q 000798 336 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHKISQYHEFLVLITFMG 409 (1279)
Q Consensus 336 LitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IM-GefrNs~~~nILawii~ll 409 (1279)
...|...++-+.++++. .+++..++-+..++....|-++.=|++.+.-..... |.++-.++.+++..+..++
T Consensus 364 ~~~R~~lVllt~~iA~~--iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~ 436 (449)
T KOG1304|consen 364 YALRVFLVLLTFLIAVA--VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVF 436 (449)
T ss_pred HHHHHHHHHHHHHHHHH--CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHH
Confidence 45566666666666554 344666666666666666666666777665544444 5666666666544333333
No 97
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=84.04 E-value=1.2e+02 Score=37.64 Aligned_cols=87 Identities=18% Similarity=0.176 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh--CCC---cCCchHHHHHHHHH-HHHHHHHHHhcCchhHHHHHHHH
Q 000798 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL--RLD---IPGWLHHATIRIIS-IVPALYCVWTSGAEGVYQLLIFT 365 (1279)
Q Consensus 292 ~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL--~lr---i~~w~RrLitRlIA-IIPALiVal~~G~~~l~qLLI~a 365 (1279)
|++.+ ..+..+...+...+|..+++.+++..+. +.+ -++...|+++.++. +++..+ . +.|. ++..| =
T Consensus 353 P~~~i-~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~l-l-~~gG-~l~~l---Q 425 (453)
T TIGR00842 353 PLGTI-TSALALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVL-L-FSGG-SLAAL---Q 425 (453)
T ss_pred cHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHH-H-HhcC-cHHHH---H
Confidence 44443 3444444456667777788888877662 222 14444455554333 333322 2 3332 12211 1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000798 366 QVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 366 QVl~SL~LPFALIPLL~LtN 385 (1279)
.+.....+||.++-++...+
T Consensus 426 ~~~ii~alP~~~i~~l~~~s 445 (453)
T TIGR00842 426 TTAIIAALPFSLVMLVVMAS 445 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22333668998887776544
No 98
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=83.03 E-value=90 Score=38.78 Aligned_cols=20 Identities=20% Similarity=0.411 Sum_probs=10.0
Q ss_pred cccccCCCCCCCccCCCCCC
Q 000798 638 EESSKDAPESTSALMSDGPA 657 (1279)
Q Consensus 638 ee~~K~~~~~~~s~~sdgP~ 657 (1279)
++.+|+-+...--++++||+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~ 438 (460)
T PRK13108 419 KAAPIPDPAKPDELAVAGPG 438 (460)
T ss_pred cCCCcCCCCCCCCCccCCCC
Confidence 33444433333346777776
No 99
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=82.34 E-value=12 Score=44.30 Aligned_cols=88 Identities=22% Similarity=0.285 Sum_probs=56.5
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSG-AEGVYQLL 362 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal~~G-~~~l~qLL 362 (1279)
.++.++| ++.+-++=+.++...++++++..-|+....++.+|+ |.|.-.++.. ..+.++.+.+ .+++..
T Consensus 71 ~~~~v~~-~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali~i-----~~v~i~lfl~~vegi~t-- 140 (349)
T COG3949 71 ILKYVSG-PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALIII-----LLVLILLFLGRVEGIIT-- 140 (349)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHHHH-----HHHHHHHHHhcccceee--
Confidence 4677777 666678888889999999997777767677777665 6776543321 2222333444 555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 000798 363 IFTQVMVAIMLPSSVIPLFRVASS 386 (1279)
Q Consensus 363 I~aQVl~SL~LPFALIPLL~LtNs 386 (1279)
++++.+||..+.++..++.
T Consensus 141 -----vn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 141 -----VNGIITPFLIIILVLVTLS 159 (349)
T ss_pred -----eheeHHHHHHHHHHHHHHH
Confidence 3466788888876655443
No 100
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=80.44 E-value=0.075 Score=61.23 Aligned_cols=52 Identities=10% Similarity=0.126 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000798 335 HATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQ 388 (1279)
Q Consensus 335 rLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~ 388 (1279)
+...|++.++.+.+++.+. +++..++.+...+....+-|++=+++++...+.
T Consensus 323 ~~~~~~~~~~~~~~iA~~v--p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~ 374 (409)
T PF01490_consen 323 RYLIRIILVLLSFLIAIFV--PNFGDIISLVGALFGSFISFILPALLYLKLFKR 374 (409)
T ss_pred eeeeecchhhhhhhhhhhc--cchhhhhcccchHHHHhHHHHHHHHHHHHhhcc
Confidence 3444454555555555432 345666666666666656555555666554443
No 101
>PTZ00206 amino acid transporter; Provisional
Probab=80.40 E-value=1.5e+02 Score=36.36 Aligned_cols=49 Identities=18% Similarity=0.207 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 332 WLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 332 w~RrLitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~L 383 (1279)
|++.+ .+.+..+.+++++++ .+++..++-+...+.+..+-|.+=+++++
T Consensus 376 ~~~~~-~~~~l~~~~l~iAi~--vP~l~~vl~lvGa~~~~~l~fi~P~lf~l 424 (467)
T PTZ00206 376 WKHCI-AVVTLSVVMLLCGLF--IPKINTVLGFAGSISGGLLGFILPALLFM 424 (467)
T ss_pred hhHHH-HHHHHHHHHHHHHhc--cCCHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44433 333333344445543 23466666666666666665555555554
No 102
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=78.97 E-value=1.3e+02 Score=38.70 Aligned_cols=148 Identities=13% Similarity=0.047 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhccCCccccC-HHHH---------HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000798 253 IYMVNYVLMNSAANLFYSTGLVLLT-FQDA---------MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 322 (1279)
Q Consensus 253 sfLINlaVViVaAavLygtG~~V~t-l~dA---------a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~Vme 322 (1279)
+.++++.++...|.+.|+.+..... ...+ .++++..=.+.+-.++|-+-|++.|+.|++.+. +.++.
T Consensus 374 sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~---e~iit 450 (629)
T KOG3659|consen 374 SGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGI---EAIIT 450 (629)
T ss_pred HHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhH---HHHhc
Confidence 4566777888888887775543221 0000 123333222233345666777777777766444 34555
Q ss_pred hhhCCCcCC--chHHHHHHHHH-HHHHHHHHHh-cCchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccccc
Q 000798 323 DFLRLDIPG--WLHHATIRIIS-IVPALYCVWT-SGAEGVYQLLIFTQVMVAIMLPSSVI--------PLFRVASSRQIM 390 (1279)
Q Consensus 323 GFL~lri~~--w~RrLitRlIA-IIPALiVal~-~G~~~l~qLLI~aQVl~SL~LPFALI--------PLL~LtNsr~IM 390 (1279)
++.+..... ..|.+++..+. ..+.+.+... .|......+++.--+..+++.+..+. -+=.|.+|-+.|
T Consensus 451 ~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~M 530 (629)
T KOG3659|consen 451 PLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQM 530 (629)
T ss_pred cccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 554322111 11222232222 2222221111 11112233333333333333333222 233567777788
Q ss_pred cCCCchHHHHHHH
Q 000798 391 GVHKISQYHEFLV 403 (1279)
Q Consensus 391 GefrNs~~~nILa 403 (1279)
=.|+++++.++.-
T Consensus 531 lg~~P~~yw~v~w 543 (629)
T KOG3659|consen 531 LGFRPGWYWRVCW 543 (629)
T ss_pred hCCCCchhHHHHH
Confidence 8889998877643
No 103
>PRK09950 putative transporter; Provisional
Probab=77.53 E-value=2.1e+02 Score=36.20 Aligned_cols=87 Identities=17% Similarity=0.140 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC-----CcCCchHHHHHHHHH-HHHHHHHHHhcCchhHHHHHHHH
Q 000798 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL-----DIPGWLHHATIRIIS-IVPALYCVWTSGAEGVYQLLIFT 365 (1279)
Q Consensus 292 ~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l-----ri~~w~RrLitRlIA-IIPALiVal~~G~~~l~qLLI~a 365 (1279)
|++.+ ..+..+...+...+|..+++.+++..+-.. +.|+...|+++.++. +++..+ . +.|. ++..|-
T Consensus 399 P~~~i-~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~L-l-~~gG-~l~~lQ--- 471 (506)
T PRK09950 399 PAGKL-FLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSI-L-FTGA-SLDTMK--- 471 (506)
T ss_pred cHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHH-H-HhCC-cHHHHH---
Confidence 44443 334444444666777778888888766322 123344455554433 333322 2 3332 122111
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000798 366 QVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 366 QVl~SL~LPFALIPLL~LtN 385 (1279)
.+.....+||.++.++...+
T Consensus 472 ~~~ii~alP~~~i~~l~~~s 491 (506)
T PRK09950 472 TTVVLTALPFLVILLIKVYG 491 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22233667888887766544
No 104
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=73.63 E-value=2.1e+02 Score=34.48 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 000798 251 SGIYMVNYVLMNSAANLFYS 270 (1279)
Q Consensus 251 lgsfLINlaVViVaAavLyg 270 (1279)
++++++.+++-++.+..+.|
T Consensus 127 igs~~~~~~~Gvalg~~~~G 146 (346)
T COG1294 127 IGSFLPPLLLGVALGNLLQG 146 (346)
T ss_pred hhhHHHHHHHHHHHHHHhcC
Confidence 45677777776666666644
No 105
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=71.42 E-value=82 Score=37.34 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000798 338 IRIISIVPALYCVWTSG 354 (1279)
Q Consensus 338 tRlIAIIPALiVal~~G 354 (1279)
+....++|.+.+..+..
T Consensus 131 ~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 131 WLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33455667777665544
No 106
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=70.12 E-value=1.2e+02 Score=39.19 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=42.8
Q ss_pred hhCChhH-----HHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc---c
Q 000798 128 LMGVELS-----TCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---T 194 (1279)
Q Consensus 128 LFGIPL~-----~gVLITavdt~LLL~lgsy~g~RKl-----E~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLV---P 194 (1279)
+||+|.. -.|+-.++.+|++-++.+ ..+|. ..++.-++ .+++++.+.+++..|=..-+.+|+- -
T Consensus 205 ~fGipv~~~~Y~~sViPiil~v~~~s~iEk--~l~K~iP~~l~~i~~P~l-tlli~~pl~l~viGPig~~i~~~l~~~i~ 281 (627)
T PRK09824 205 FLGIPVTLLNYSSSVIPIIFSAWLCSILER--RLNAWLPSAIKNFFTPLL-CLMVIVPLTFLLIGPLATWLSELLAAGYQ 281 (627)
T ss_pred ecceeeeecCCccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4677643 234445555555555433 23332 22333222 3455555666666775433333321 1
Q ss_pred ccCCChHHHHHHHhcccchhHHHH-HhHHhh
Q 000798 195 KFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 224 (1279)
Q Consensus 195 ~lp~~sl~~aVAIIGATIMPhNfY-LHSaLV 224 (1279)
.+-.-.-.++.+++|+.--|-.++ +|-+++
T Consensus 282 ~l~~~~~~i~g~i~g~~~~~lV~~G~H~~l~ 312 (627)
T PRK09824 282 WLYQAVPAFAGAVMGAFWQVFVIFGLHWGLV 312 (627)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccchhhH
Confidence 111112234556777655444334 666554
No 107
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=68.58 E-value=3.3e+02 Score=34.65 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 360 QLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 360 qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfVi~~l 422 (1279)
..+.+.-.-.++.+|+.++.++. . .++ -|.+.|++.+=.+..++++++.++++-..+
T Consensus 327 g~~~l~~~gLG~~~Plll~~~~~--~--~~l--pk~g~wm~~~k~~~G~~ll~~~~~ll~~~~ 383 (571)
T PRK00293 327 GGLTLYLLALGMGLPLILITTFG--N--KLL--PKSGPWMNQVKTAFGFVLLALPVFLLERVL 383 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--H--hhc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33434334455777888777652 1 233 267888888888888888888888776443
No 108
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=67.28 E-value=3.4e+02 Score=34.19 Aligned_cols=38 Identities=13% Similarity=-0.090 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHH
Q 000798 101 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFL 139 (1279)
Q Consensus 101 ~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLI 139 (1279)
.+|+.-.++.++.-+..+.-.-.... +.+=|.+++.+.
T Consensus 14 ~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~ 51 (524)
T PF05977_consen 14 RLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQ 51 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 46666666777766663322222111 234466665443
No 109
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=66.84 E-value=3.4e+02 Score=35.92 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000798 365 TQVMVAIMLPSSVIPLFRVA 384 (1279)
Q Consensus 365 aQVl~SL~LPFALIPLL~Lt 384 (1279)
..++.+..| |.++|--++.
T Consensus 267 ~e~~ia~~l-Fll~P~~~~~ 285 (764)
T TIGR02865 267 YEALIATLL-FLLIPNKIYK 285 (764)
T ss_pred HHHHHHHHH-HHHhhHHHHH
Confidence 444444443 6677755443
No 110
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=64.85 E-value=3.9e+02 Score=34.11 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=20.9
Q ss_pred HHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000798 285 MEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 325 (1279)
Q Consensus 285 LepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL 325 (1279)
+....+.++...+++..+=+..|||.-+..+--.+..+|.+
T Consensus 167 i~~l~~~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~gli 207 (533)
T COG1283 167 IAKLSDDPIVALLIGALLTALIQSSLAAIGILLSLTSQGLI 207 (533)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 44444444445555555555566666555444344445543
No 111
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=61.25 E-value=27 Score=43.17 Aligned_cols=60 Identities=5% Similarity=0.034 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHhHhH-HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchh
Q 000798 39 DPGKWAVIIEGGAHFGF-DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWT 98 (1279)
Q Consensus 39 DPGnIaT~lQAGA~FGY-~LLWVLLLAtI~a~llQ~LAARLGVV--TGk~LAEicRe~YgK~~ 98 (1279)
=|+.+.|+.+---+||- .-.|--.-+|+=-+++-.++..+--. .-++..|+.|.|||+..
T Consensus 68 W~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~ 130 (667)
T KOG2348|consen 68 WASTLLTSAGKAYQYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQAS 130 (667)
T ss_pred hhHHHHhhccchhhhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCccc
Confidence 34555555444434442 23555555555445555555544333 46779999999999853
No 112
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=60.17 E-value=71 Score=35.26 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC-CchHHHHHHHHHHHHHHHHH
Q 000798 357 GVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVH-KISQYHEFLVLITFMGMLGL 413 (1279)
Q Consensus 357 ~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGef-rNs~~~nILawii~llIi~L 413 (1279)
+++.++.+ ++.+++|||-..-+.+-.. -++|..- .+...+-++..+..++.+++
T Consensus 79 p~ialimi--~iAs~llP~PsLVIaYCl~-mqi~~~~~~~~~gMsIvcv~~Si~ti~~ 133 (189)
T PF05313_consen 79 PLIALIMI--IIASLLLPFPSLVIAYCLS-MQIYNPGANNNVGMSIVCVIMSIITIIV 133 (189)
T ss_pred cHHHHHHH--HHHHHHcCccHHHHHHHHH-heeecCCCcceehhHHHHHHHHHHHHHH
Confidence 34444433 4667889985554443332 3344332 23333444444433333333
No 113
>PRK03612 spermidine synthase; Provisional
Probab=58.03 E-value=2.8e+02 Score=34.87 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=30.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhh
Q 000798 47 IEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEE 93 (1279)
Q Consensus 47 lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVV-TGk~LAEicRe~ 93 (1279)
+.+.+--+|.++|.=+++.+++--+...+.=+++. .|.++.-.+-.+
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~ 72 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKY 72 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888999998888877766665555555544 455555444433
No 114
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=57.54 E-value=1.8e+02 Score=36.38 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 000798 401 FLVLITFMGMLGLKLIFMVEMIF 423 (1279)
Q Consensus 401 ILawii~llIi~LNIyfVi~~lf 423 (1279)
+++.+.-...+.+-++++.+.++
T Consensus 425 l~~G~lPF~~i~iEl~~i~~s~W 447 (521)
T PF02990_consen 425 LIGGILPFGAIFIELYFIFSSLW 447 (521)
T ss_pred eecchHHHHHHHHHHHHHHHHhh
Confidence 34444444455555666655543
No 115
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=56.09 E-value=72 Score=34.11 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=5.1
Q ss_pred HHHHhhCCh
Q 000798 124 GLNLLMGVE 132 (1279)
Q Consensus 124 ALnLLFGIP 132 (1279)
++.++||-.
T Consensus 116 ~fa~lfgg~ 124 (193)
T PF06738_consen 116 AFALLFGGS 124 (193)
T ss_pred HHHHHHCCC
Confidence 444567654
No 116
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=55.65 E-value=5.5e+02 Score=32.83 Aligned_cols=91 Identities=18% Similarity=0.265 Sum_probs=46.1
Q ss_pred HHHHhhhhHHHHHhhhc------cccchHHHHHHHHH-----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Q 000798 21 YRLVPAVLPVLLISIGY------VDPGKWAVIIEGGA-----HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQI 89 (1279)
Q Consensus 21 rklLa~lGPGfLvSiAy------IDPGnIaT~lQAGA-----~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEi 89 (1279)
..++..+-+|++.++-. .+|=.-.+-..+.. .+|+.+ +++++++.-++|.+++.+-+ ...
T Consensus 52 ~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~~---~~~~tllaGv~~i~~G~lRL------G~l 122 (554)
T COG0659 52 AGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLAL---AFLATLLAGVFQILLGLLRL------GRL 122 (554)
T ss_pred HHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh------hhh
Confidence 34666677777766532 33333333333332 344443 45667777788877765433 111
Q ss_pred HHhhcCchhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000798 90 CGEEYDKWTCVFIGVQTELS--VILLDLTMVLGIAH 123 (1279)
Q Consensus 90 cRe~YgK~~~~~LwI~aeLA--IIaaDIaEVIGiAI 123 (1279)
+ +-.|+. .+.+++..++ ++..++.++.|...
T Consensus 123 i-~fip~p--Vl~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 123 I-RFIPRP--VLIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred h-hhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1 122332 2345555554 45567777776543
No 117
>PTZ00243 ABC transporter; Provisional
Probab=55.48 E-value=8.5e+02 Score=34.99 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=12.7
Q ss_pred HHHHHHHHHhcCCcHHHHHHhh
Q 000798 72 QYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 72 Q~LAARLGVVTGk~LAEicRe~ 93 (1279)
.+++.|+|+-....|...+.++
T Consensus 306 ~~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 306 YYISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677775555555555443
No 118
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=55.42 E-value=5.8e+02 Score=33.01 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=5.7
Q ss_pred HHHHHHhccc
Q 000798 202 FSIMSLLGAS 211 (1279)
Q Consensus 202 ~~aVAIIGAT 211 (1279)
.++.+++|++
T Consensus 281 ~i~~~iig~l 290 (610)
T TIGR01995 281 WLAGALLAAL 290 (610)
T ss_pred HHHHHHHHHH
Confidence 4455666655
No 119
>PRK10263 DNA translocase FtsK; Provisional
Probab=52.58 E-value=42 Score=46.11 Aligned_cols=9 Identities=33% Similarity=0.398 Sum_probs=4.5
Q ss_pred hhCChhHHH
Q 000798 128 LMGVELSTC 136 (1279)
Q Consensus 128 LFGIPL~~g 136 (1279)
+||+.-|+.
T Consensus 78 LFGl~AYLL 86 (1355)
T PRK10263 78 IFGVMAYTI 86 (1355)
T ss_pred HHhHHHHHH
Confidence 556544443
No 120
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=51.17 E-value=7.7e+02 Score=33.19 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 54 GFDLVALMLVFNFAAIFCQYLSARIA 79 (1279)
Q Consensus 54 GY~LLWVLLLAtI~a~llQ~LAARLG 79 (1279)
-+.++|-++++.++++++=++++++-
T Consensus 205 l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 205 CVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888777777766666653
No 121
>PLN00149 potassium transporter; Provisional
Probab=50.17 E-value=7.8e+02 Score=32.98 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.2
Q ss_pred ccHHHhhcccceeccc
Q 000798 708 ITQEARAKKLDLVLGV 723 (1279)
Q Consensus 708 ~t~~a~~~~~~~~lg~ 723 (1279)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00149 713 ELMEAREAGMAYILGH 728 (779)
T ss_pred HHHHHHHcCcEEEecC
Confidence 4688999999999983
No 122
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=49.37 E-value=2.9e+02 Score=33.43 Aligned_cols=72 Identities=8% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhCC-CcCCchHHHHHHHHHHHHHHHHH------------HhcCchhHHHHHHHHH
Q 000798 300 LVLFFSNQIIAVNWNLSGQVVLQDFLRL-DIPGWLHHATIRIISIVPALYCV------------WTSGAEGVYQLLIFTQ 366 (1279)
Q Consensus 300 IGLLAAGqSSTITgTlAGq~VmeGFL~l-ri~~w~RrLitRlIAIIPALiVa------------l~~G~~~l~qLLI~aQ 366 (1279)
.+++++.+.|.+.+.|- |..++. +.+-|.|.+-.-++.++.+++.. +|.|-+..+.++++.|
T Consensus 186 ~avl~~c~~SgfAgvYf-----EkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~ 260 (345)
T KOG2234|consen 186 VAVLVACFLSGFAGVYF-----EKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLN 260 (345)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHH
Confidence 34455556666655543 333322 45678887644455555555544 4566667888999999
Q ss_pred HHHHHHHHHH
Q 000798 367 VMVAIMLPSS 376 (1279)
Q Consensus 367 Vl~SL~LPFA 376 (1279)
+++++...++
T Consensus 261 a~gGLlvs~v 270 (345)
T KOG2234|consen 261 AVGGLLVSLV 270 (345)
T ss_pred hccchhHHHH
Confidence 9999876544
No 123
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.60 E-value=3.4e+02 Score=34.90 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000798 400 EFLVLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 400 nILawii~llIi~LNIyfVi~~l 422 (1279)
.+++.+.-...+++-++|+++.+
T Consensus 489 ili~GilPFg~ifIELfFI~~Si 511 (628)
T KOG1278|consen 489 ILIAGILPFGAIFIELFFILSSI 511 (628)
T ss_pred HHhhcccchHHHHHHHHHHHHHH
Confidence 33444444455666666666554
No 124
>PLN00151 potassium transporter; Provisional
Probab=47.54 E-value=8.7e+02 Score=32.80 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.0
Q ss_pred ccHHHhhcccceeccc
Q 000798 708 ITQEARAKKLDLVLGV 723 (1279)
Q Consensus 708 ~t~~a~~~~~~~~lg~ 723 (1279)
.-++||.+..=.++|=
T Consensus 786 ~l~~a~e~Gv~yilG~ 801 (852)
T PLN00151 786 FIREAKESGVVYLLGH 801 (852)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4678999999999983
No 125
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=46.45 E-value=6.3e+02 Score=30.98 Aligned_cols=31 Identities=3% Similarity=0.085 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 000798 364 FTQVMVAIMLPSSVIPLFRVASSRQIMGVHK 394 (1279)
Q Consensus 364 ~aQVl~SL~LPFALIPLL~LtNsr~IMGefr 394 (1279)
..+++.+.+--|++++++++..-+-++-+|.
T Consensus 238 ~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv 268 (374)
T PF01528_consen 238 VSDMVFGAINVFAVLSIIYLIVIEVVLARYV 268 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666777788888888866555544443
No 126
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=45.63 E-value=5.6e+02 Score=30.39 Aligned_cols=27 Identities=19% Similarity=0.106 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000798 362 LIFTQVMVAIMLPSSVIPLFRVASSRQ 388 (1279)
Q Consensus 362 LI~aQVl~SL~LPFALIPLL~LtNsr~ 388 (1279)
-.+.+++..+.+|+++.-+++-...|.
T Consensus 175 ~~~~~l~~~v~lPlvlG~~lr~~~~~~ 201 (328)
T TIGR00832 175 TIAKSVLIYLGIPLIAGILTRYWLLKR 201 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345678888999999998887655443
No 127
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=45.26 E-value=5.1e+02 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=21.1
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhHHHHH
Q 000798 280 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 312 (1279)
Q Consensus 280 dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTIT 312 (1279)
+-.++.++.+| +...+++.+..+...+..++.
T Consensus 73 ~~~~~~~~~~G-~~~~~li~~s~~~~~~~~~~a 104 (415)
T COG0814 73 SITSLVEDYLG-KKGGILIGLSYFFALYGLLVA 104 (415)
T ss_pred cHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHH
Confidence 33445688888 666777777777766665554
No 128
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=43.71 E-value=3.5e+02 Score=30.10 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=19.4
Q ss_pred hCChhHHHHHHHHHHHHHHHHhccchhH
Q 000798 129 MGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 129 FGIPL~~gVLITavdt~LLL~lgsy~g~ 156 (1279)
.|.+.+..+++.++.++++.+.+-+.|.
T Consensus 152 ~g~~~~~~~~~igivs~i~~~~G~~lG~ 179 (206)
T TIGR02840 152 LGLNPLATSILVAVMSFIFVSLGLFLGK 179 (206)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777778777776655443
No 129
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=43.68 E-value=3.4e+02 Score=34.59 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=36.3
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 283 ~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
..|.....+|+..++.++++=+.-|||+-|..+..-+|-.|++.++
T Consensus 38 ~~L~~~t~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl~ 83 (533)
T COG1283 38 KILARFTSNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSLK 83 (533)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccchh
Confidence 3455555567888888888888889999999999899999987653
No 130
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=43.60 E-value=1e+02 Score=35.43 Aligned_cols=30 Identities=7% Similarity=-0.036 Sum_probs=15.9
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHHH
Q 000798 120 GIAHGLNLLMGVELSTCVFLAAADAILFPF 149 (1279)
Q Consensus 120 GiAIALnLLFGIPL~~gVLITavdt~LLL~ 149 (1279)
+++.++...|+.|.|+++++.++..++++.
T Consensus 32 s~~~a~~~~~~~~~~~ai~~glvwgl~I~~ 61 (301)
T PF14362_consen 32 SGGYALYTVFGGPVWAAIPFGLVWGLVIFN 61 (301)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 344455556776666666555444444433
No 131
>PRK09796 PTS system cellobiose/arbutin/salicin-specific transporter subunits IIBC; Provisional
Probab=42.67 E-value=7.9e+02 Score=30.93 Aligned_cols=94 Identities=13% Similarity=0.075 Sum_probs=41.5
Q ss_pred hhCChhH-----HHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc---c
Q 000798 128 LMGVELS-----TCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---T 194 (1279)
Q Consensus 128 LFGIPL~-----~gVLITavdt~LLL~lgsy~g~RKl-----E~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLV---P 194 (1279)
+||+|.. -.|+-.++.+|+.-++.+ ..||. +.++.-+ ..+++++.+.+++..|=..-+-+++. -
T Consensus 207 ~~Gipi~~~~Y~ssViPiil~v~~~s~vek--~~~K~~P~~l~~i~~P~-ltlli~~pl~l~viGPig~~i~~~i~~~i~ 283 (472)
T PRK09796 207 FALIPVTAVKYTYTVIPALVMTWCLSYIER--WVDRITPAVTKNFLKPM-LIVLIAAPLAILLIGPIGIWIGSAISALVY 283 (472)
T ss_pred ecCceeeecCCCcchHHHHHHHHHHHHHHH--HHHHhCHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3566543 234444555555555432 34442 3333322 23455666666677775433333321 1
Q ss_pred ccCCChHHHHHHHhcccchhHHHH-HhHHhh
Q 000798 195 KFSGDSAFSIMSLLGASMMPHNFY-LHSSIV 224 (1279)
Q Consensus 195 ~lp~~sl~~aVAIIGATIMPhNfY-LHSaLV 224 (1279)
.+-...-.+..+++|+.--|-.++ +|-+++
T Consensus 284 ~l~~~~~~i~g~i~g~~~~~lV~~G~H~~~~ 314 (472)
T PRK09796 284 TIHGYLGWLSVAIMGALWPLLVMTGMHRVFT 314 (472)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhccchhhh
Confidence 111111234566666654333333 555543
No 132
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=42.64 E-value=4.6e+02 Score=36.23 Aligned_cols=50 Identities=12% Similarity=0.124 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000798 368 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 368 l~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfV 418 (1279)
+..+.+|.+++.+++++ .+.---.-+.+.+.+.+.|++.++++.+.+.++
T Consensus 114 ~~~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~~~~~ 163 (1094)
T PRK02983 114 IIGFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGILVGWG 163 (1094)
T ss_pred HHHHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666554 343322223466677777877777775544444
No 133
>PLN00150 potassium ion transporter family protein; Provisional
Probab=42.33 E-value=1e+03 Score=32.02 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=13.3
Q ss_pred ccHHHhhcccceeccc
Q 000798 708 ITQEARAKKLDLVLGV 723 (1279)
Q Consensus 708 ~t~~a~~~~~~~~lg~ 723 (1279)
.-++||.++.=.++|=
T Consensus 713 ~L~~A~eaGVvYIlG~ 728 (779)
T PLN00150 713 FLNKCKEAGVVYILGN 728 (779)
T ss_pred HHHHHHHcCcEEEecc
Confidence 4688999999999983
No 134
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=41.84 E-value=8.2e+02 Score=30.84 Aligned_cols=34 Identities=9% Similarity=0.231 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc
Q 000798 240 HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGL 273 (1279)
Q Consensus 240 ~D~~~~il~i~lgsfLINlaVViVaAavLygtG~ 273 (1279)
.-|++...++.+|+.+.++.|+++-+-.-++.|-
T Consensus 124 ~~H~~~t~~VAiGt~~Sa~wIl~aNsWMqtP~G~ 157 (457)
T COG1271 124 KLHLLSTWLVAIGTNLSAFWILAANSWMQTPVGF 157 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCee
Confidence 3566666666777777777777776666556553
No 135
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=41.19 E-value=8.9 Score=44.43 Aligned_cols=50 Identities=12% Similarity=0.130 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhh
Q 000798 139 LAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLS 188 (1279)
Q Consensus 139 ITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~~eV 188 (1279)
+.++.+|+.+++.+.++...-..+..||..++++.|++.+++.+-.|-.+
T Consensus 117 lLaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT~ 166 (381)
T PF05297_consen 117 LLALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFTI 166 (381)
T ss_dssp --------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444443333334454555556666566666666433
No 136
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=41.15 E-value=5.7e+02 Score=34.78 Aligned_cols=74 Identities=15% Similarity=0.094 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHHHHHh--cc
Q 000798 133 LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLL--GA 210 (1279)
Q Consensus 133 L~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLVP~lp~~sl~~aVAII--GA 210 (1279)
+.-++++.++++++ |+++ +|-.-...+.+-..|+++|++.-.. +-.. + -.+-+++..++|++ ||
T Consensus 340 LiEg~vlV~iVl~l--FLgn---~RsAli~~~~lPLS~li~f~~M~~~-gi~~----N----lMSLGGlAIaiG~~VD~A 405 (1027)
T COG3696 340 LIEGSVLVIIVLAL--FLGN---FRSALIVIISLPLSLLIAFIVMNFF-GISA----N----LMSLGGLAIAIGAMVDAA 405 (1027)
T ss_pred HHhhhHHHHHHHHH--Hhcc---HHHHHHHHHHHHHHHHHHHHHHHHc-CCcc----h----hhcccchheeeeeeecce
Confidence 34455555555444 4455 3444333334444566666653322 1110 0 01234455556555 67
Q ss_pred cchhHHHHHh
Q 000798 211 SMMPHNFYLH 220 (1279)
Q Consensus 211 TIMPhNfYLH 220 (1279)
+|+--|.|=|
T Consensus 406 IV~vEN~~r~ 415 (1027)
T COG3696 406 IVVVENAHRR 415 (1027)
T ss_pred EEeehhHHHH
Confidence 7888887644
No 137
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=40.85 E-value=1.5e+02 Score=31.92 Aligned_cols=79 Identities=14% Similarity=0.230 Sum_probs=39.5
Q ss_pred HHHHHHhhCCh---hHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHHHHHHHHHHHHHH---HhhCCChhhhcccccc
Q 000798 122 AHGLNLLMGVE---LSTCVFLAAADAILFP-FFAGQLENYKAKLLWICTAGIILLSYVLGV---LISQPEIPLSVNGMLT 194 (1279)
Q Consensus 122 AIALnLLFGIP---L~~gVLITavdt~LLL-~lgsy~g~RKlE~li~lLI~lMlLsFVi~l---~vs~Pd~~eVl~GLVP 194 (1279)
++++.++|..| ++++.++ +...+.+- ++.++.+.-+. ...+++.+++.++-.. ..-.|...-...|++|
T Consensus 17 ~v~Faivfnvp~~~l~~~~~~-g~~g~~v~~l~~~~~g~~~~---~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpaIiP 92 (156)
T COG3610 17 TVGFAIVFNVPPRALPICGFL-GALGWVVYYLLGKHFGFSIV---VATFIAAFVVGCLGNLLSRRYKTPAKVFTVPAIIP 92 (156)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-HHHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHHHHHHHHHhcCChhhhecchhhh
Confidence 44566677664 3444444 44344432 22332333222 2223333344443332 2233555566788999
Q ss_pred ccCCChHHHH
Q 000798 195 KFSGDSAFSI 204 (1279)
Q Consensus 195 ~lp~~sl~~a 204 (1279)
-+|+...+.+
T Consensus 93 lVPG~~ay~a 102 (156)
T COG3610 93 LVPGGLAYQA 102 (156)
T ss_pred cCCcHHHHHH
Confidence 9999877764
No 138
>PRK11469 hypothetical protein; Provisional
Probab=40.53 E-value=5.4e+02 Score=28.36 Aligned_cols=28 Identities=4% Similarity=0.160 Sum_probs=19.5
Q ss_pred hCChhHHHHHHHHHHHHHHHHhccchhH
Q 000798 129 MGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 129 FGIPL~~gVLITavdt~LLL~lgsy~g~ 156 (1279)
.|.|.+..++++++.++++.+++-|.|.
T Consensus 129 ~g~~~~~~~~~ig~~s~~~~~~G~~lG~ 156 (188)
T PRK11469 129 LQVNIIATALAIGCATLIMSTLGMMVGR 156 (188)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4777777777777777777766654444
No 139
>PRK11281 hypothetical protein; Provisional
Probab=39.82 E-value=1e+03 Score=33.18 Aligned_cols=13 Identities=15% Similarity=0.452 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHh
Q 000798 340 IISIVPALYCVWT 352 (1279)
Q Consensus 340 lIAIIPALiVal~ 352 (1279)
...++|.+.+..+
T Consensus 627 ~~~~~pl~~~~~~ 639 (1113)
T PRK11281 627 SLALLPLLFWSVV 639 (1113)
T ss_pred HHHHHHHHHHHHH
Confidence 4556677766444
No 140
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=38.99 E-value=9.6e+02 Score=30.82 Aligned_cols=101 Identities=18% Similarity=0.097 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc----HHHHHH--hhcCchhHHHHHHHHHHHHHHHHH-------H---HHHH
Q 000798 57 LVALMLVFNFAAIFCQYLSARIAVVTGKD----LAQICG--EEYDKWTCVFIGVQTELSVILLDL-------T---MVLG 120 (1279)
Q Consensus 57 LLWVLLLAtI~a~llQ~LAARLGVVTGk~----LAEicR--e~YgK~~~~~LwI~aeLAIIaaDI-------a---EVIG 120 (1279)
.+|.+.+-..+||++..|-|-- .|++ |...++ .+-+|..++++.+ ++++++-+ + -|+.
T Consensus 43 IfWtL~liv~iKYv~ivlradn---~GEGGi~aL~sL~~~~~~~~~~~~~~l~~---l~l~G~al~~gDgviTPAISVlS 116 (534)
T PF02705_consen 43 IFWTLTLIVTIKYVLIVLRADN---NGEGGIFALYSLIRRFLKSSKRRRWLLLI---LGLLGAALFYGDGVITPAISVLS 116 (534)
T ss_pred HHHHHHHHHHHheEEEEEEeCC---CCChhHHHHHHHHHHhhccchhHHHHHHH---HHHHHhhhhhcceeecchHHHHH
Confidence 4577777777777665444331 2333 334444 2234444444322 33333211 1 1333
Q ss_pred HHHHHHHhh-CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 000798 121 IAHGLNLLM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 121 iAIALnLLF-GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~l 165 (1279)
+--|+.... ++..+ -+++++++. ++||..+++|-.|+.+++.-
T Consensus 117 AvEGl~v~~p~~~~~-Vv~it~~IL-v~LF~iQ~~GT~~ig~~FgP 160 (534)
T PF02705_consen 117 AVEGLEVATPSLEPY-VVPITIAIL-VGLFAIQRFGTAKIGKLFGP 160 (534)
T ss_pred HhhhhhccCCCCcce-ehhHHHHHH-HHHHHHHhhhhhHHHHHHhH
Confidence 333444333 22211 233444333 33444466788898877654
No 141
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=38.78 E-value=1.4e+02 Score=34.28 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=14.8
Q ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHhccchh
Q 000798 124 GLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 124 ALnLLFGIPL~~gVLITavdt~LLL~lgsy~g 155 (1279)
++..||| --|.-.++++++.++...+..|..
T Consensus 138 ~f~~l~g-G~w~d~~iaf~~~~~~~~~~~~l~ 168 (250)
T COG2966 138 AFALLFG-GGWLDFLIAFFAGLLGFLLRQYLS 168 (250)
T ss_pred HHHHHcC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777 334444444555444444444433
No 142
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=38.58 E-value=1.1e+03 Score=31.31 Aligned_cols=28 Identities=11% Similarity=0.174 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 000798 137 VFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 137 VLITavdt~LLL~lgsy~g~RKlE~li~l 165 (1279)
+++++++ +++||+.+++|-.|+.+++.-
T Consensus 169 v~it~~I-Lv~LF~iQ~~GT~kvg~~FgP 196 (688)
T TIGR00794 169 VPISCII-LVLLFLIQRFGTAKVGFTFAP 196 (688)
T ss_pred hhHHHHH-HHHHHHHhccccHHHhhhhhh
Confidence 4444443 344455567788998877654
No 143
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=37.95 E-value=4.1e+02 Score=33.88 Aligned_cols=22 Identities=5% Similarity=-0.094 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 000798 295 PFAFVLVLFFSNQIIAVNWNLS 316 (1279)
Q Consensus 295 ~iLFAIGLLAAGqSSTITgTlA 316 (1279)
+.++++-++.++.++-.+.+|+
T Consensus 75 k~~~~~l~~~sa~~~Yf~~~yg 96 (545)
T PRK11598 75 RPLACLFILVGAAAQYFMMTYG 96 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444444444443
No 144
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.38 E-value=6e+02 Score=27.99 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhcccccc-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 371 IMLPSSVIPLFRVASSRQIMG-VHKISQYHEFLVLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 371 L~LPFALIPLL~LtNsr~IMG-efrNs~~~nILawii~llIi~LNIyfVi~~l 422 (1279)
+...++.+.+.++.... +. ..|.+.|..+ .+.+.++++.+.++.+...+
T Consensus 121 i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~-~~~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 121 IVGGLVFYFIFKYIYPY--KKKKKRPSWWKYI-LISVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred HHHHHHHHHHHHHHhcc--cccccccHHHHHH-HHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444432 22 2444444433 33333333334444444443
No 145
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=37.37 E-value=5.3e+02 Score=29.70 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=19.4
Q ss_pred hHhHHHHHHHHHHHHHH-HHHHHHHHHH
Q 000798 52 HFGFDLVALMLVFNFAA-IFCQYLSARI 78 (1279)
Q Consensus 52 ~FGY~LLWVLLLAtI~a-~llQ~LAARL 78 (1279)
+.||..+|.++++.++- -..|.++..+
T Consensus 39 ~~G~s~~e~~lmS~~iyAGasQfv~i~L 66 (238)
T COG1296 39 ALGFSPLEAILMSLLIYAGASQFVAIGL 66 (238)
T ss_pred HcCCcHHHHHHHHHHHHccHHHHHHHHH
Confidence 67899999988886543 3666666655
No 146
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=37.24 E-value=1.3e+03 Score=32.24 Aligned_cols=14 Identities=36% Similarity=0.335 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhc
Q 000798 340 IISIVPALYCVWTS 353 (1279)
Q Consensus 340 lIAIIPALiVal~~ 353 (1279)
+..++|.+.+..++
T Consensus 606 ~~~~~pl~~~~~~~ 619 (1109)
T PRK10929 606 IGLIVPLIMALITF 619 (1109)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566776654443
No 147
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=37.20 E-value=2.5e+02 Score=29.72 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=27.9
Q ss_pred cccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000798 274 VLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 274 ~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTl 315 (1279)
++.++..+-..|--+. |.+.+.+|.|.|.|++++.+....
T Consensus 74 eLnn~rymWNilMYaI--Py~L~Ala~GFlv~~~~~p~~~~i 113 (141)
T PRK13743 74 ELNNFRYMWNILMYVI--PYTLWALAAGFLVAGVRNPLCELI 113 (141)
T ss_pred hhhhHHHHHHHHHHHH--HHHHHHHHhchhhhhhhhHHHHHH
Confidence 3455666665554443 778888899999999888875443
No 148
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=36.41 E-value=7.6e+02 Score=30.22 Aligned_cols=47 Identities=9% Similarity=0.123 Sum_probs=29.2
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 281 Aa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
..+.++..+|++....+.++..+...+........++..+++.++++
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi 155 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGL 155 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 34457888886666666665555544444444455667777787775
No 149
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=36.08 E-value=4.2e+02 Score=29.79 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC
Q 000798 336 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHK 394 (1279)
Q Consensus 336 LitRlIAIIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IM-Gefr 394 (1279)
.+..++.++|.+.+++..-....+.....-|.-..+.+|..+.-+-.+..+++-. |.|+
T Consensus 14 ~i~~l~~i~Pl~~~~l~~~~~~~y~~~~~~n~w~~~~lP~~iaii~~~~~~~E~~~~~~k 73 (241)
T TIGR03732 14 FSKKLIWIAPIIFLLLAFLLSPSYFQYATFNWWYVIFLPGMIALICALLHKKEKKASNYR 73 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 3444555666665543210000111111223444568999888777776555544 4544
No 150
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=35.01 E-value=7.5e+02 Score=28.44 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=12.7
Q ss_pred hCC-hhHHHHHHHHHHHHHHHHhcc
Q 000798 129 MGV-ELSTCVFLAAADAILFPFFAG 152 (1279)
Q Consensus 129 FGI-PL~~gVLITavdt~LLL~lgs 152 (1279)
-|. |.++.++...+.+.+-+++.+
T Consensus 46 ~G~~~~~v~~i~~~~~~~vtl~lv~ 70 (244)
T PF07907_consen 46 NGYNPILVTIIAAILITAVTLFLVN 70 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 477 556655555555544444433
No 151
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=34.98 E-value=1.1e+02 Score=41.20 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000798 367 VMVAIMLPSSVIPLF 381 (1279)
Q Consensus 367 Vl~SL~LPFALIPLL 381 (1279)
++.++.+|+++..++
T Consensus 1011 IllgLGlPWlI~~li 1025 (1096)
T TIGR00927 1011 ITVGLPVPWLLFSLI 1025 (1096)
T ss_pred eeeeccHHHHHHHHh
Confidence 344566776665554
No 152
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=34.67 E-value=6.3e+02 Score=30.04 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHHHHHhcccch
Q 000798 154 LENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMM 213 (1279)
Q Consensus 154 ~g~RKlE~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLVP~lp~~sl~~aVAIIGATIM 213 (1279)
+|++|+|.+.+++-++++++..+-.+ |..+-+-+-|+-......+.+|++|=.+-
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I~-----~EAi~R~~~P~~i~~~~ml~va~~GL~vN 138 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLIL-----WEAIQRLLAPPPIHYSGMLVVAIIGLVVN 138 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCCCCCccchHHHHHHHHHHH
Confidence 68899998866554443332222111 12222222243222355567777776553
No 153
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=34.13 E-value=6.2e+02 Score=28.72 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=16.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
Q 000798 43 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLS 75 (1279)
Q Consensus 43 IaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LA 75 (1279)
+.-.+.-|+.+.-...|.+.++.++=-+.+.++
T Consensus 185 ~~eGl~ig~~~~~~~~~~~~~ai~~Hk~~e~~~ 217 (317)
T PF02535_consen 185 FFEGLAIGAAFSSDSGWSLFIAIILHKIPEGFA 217 (317)
T ss_pred chhhhhhhcchhhhhHHHHHHHHHHhHhHHHhh
Confidence 334444555555555566655555544444443
No 154
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=33.44 E-value=7.7 Score=31.16 Aligned_cols=11 Identities=36% Similarity=1.352 Sum_probs=9.0
Q ss_pred CCcCCCCceecc
Q 000798 1227 VPHCGDGCIWKV 1238 (1279)
Q Consensus 1227 ~p~cg~~cvw~~ 1238 (1279)
+| |||.|||--
T Consensus 2 ip-CGEtCv~~p 12 (30)
T PF03784_consen 2 IP-CGETCVFIP 12 (30)
T ss_dssp EE-EEEETSSSS
T ss_pred CC-cccceeeee
Confidence 56 999999953
No 155
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=33.30 E-value=2.2e+02 Score=27.41 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhC
Q 000798 101 FIGVQTELSVIL--LDLTMVLGIAHGLNLLMG 130 (1279)
Q Consensus 101 ~LwI~aeLAIIa--aDIaEVIGiAIALnLLFG 130 (1279)
.+|.+..+++++ ..+++|+|.+.|..-++|
T Consensus 3 YlW~FL~lsIlcVSgYigQVlg~~savSsf~g 34 (80)
T PF10810_consen 3 YLWTFLALSILCVSGYIGQVLGVASAVSSFFG 34 (80)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 578777777665 578999999988875554
No 156
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=32.07 E-value=7.4e+02 Score=28.68 Aligned_cols=53 Identities=13% Similarity=0.044 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHhccc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 371 IMLPSSVIPLFRVASSRQ-IMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 423 (1279)
Q Consensus 371 L~LPFALIPLL~LtNsr~-IMGefrNs~~~nILawii~llIi~LNIyfVi~~lf 423 (1279)
+..-++.+..+++++++. ---+|--+++..+.+.+..++++++.++.+++.+.
T Consensus 50 ~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 103 (299)
T PRK09509 50 IAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQ 103 (299)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555554332 11234455666777777777777777777776653
No 157
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=31.76 E-value=1.3e+03 Score=30.06 Aligned_cols=56 Identities=14% Similarity=0.163 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000798 357 GVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 357 ~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfV 418 (1279)
.+..+.++.-.-.+|.+|++++-++- + +-+ =|.+.|++.+=-+...++++..++++
T Consensus 325 ~~~g~~~l~al~LGMg~Plllv~~f~--~-~~L---Pk~G~WM~~vK~~fGFvlLa~aiwLl 380 (569)
T COG4232 325 ALLGGLALYALGLGMGLPLLLIGVFG--N-RLL---PKPGPWMNTVKQAFGFVLLATAIWLL 380 (569)
T ss_pred HHHHHHHHHHHHHhcccchhhheecc--c-ccC---CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777788889998887765 2 322 37888998877666666666666665
No 158
>PRK12488 acetate permease; Provisional
Probab=31.64 E-value=1.2e+03 Score=29.62 Aligned_cols=59 Identities=10% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000798 264 AANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 264 aAavLygtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
.+.-++..|. .|. .+.++.-++++..+.+-++..+.....=...-..++..+++.++++
T Consensus 120 ~a~~lr~~g~--~T~---~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi 178 (549)
T PRK12488 120 IAERLRNLGK--YTF---ADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGI 178 (549)
T ss_pred HHHHHHHCCC--cch---HHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3444554442 344 4457778876667766665554443333333344555667777664
No 159
>PLN00148 potassium transporter; Provisional
Probab=31.24 E-value=1.5e+03 Score=30.63 Aligned_cols=15 Identities=20% Similarity=0.317 Sum_probs=12.3
Q ss_pred ccHHHhhcccceecc
Q 000798 708 ITQEARAKKLDLVLG 722 (1279)
Q Consensus 708 ~t~~a~~~~~~~~lg 722 (1279)
.-++||.++.=.++|
T Consensus 719 ~L~~A~eaGVvYIlG 733 (785)
T PLN00148 719 DLIEAKEAGVAYIMG 733 (785)
T ss_pred HHHHHHHcCcEEEec
Confidence 467888888888888
No 160
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=31.14 E-value=8.8e+02 Score=28.05 Aligned_cols=18 Identities=17% Similarity=0.156 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 000798 154 LENYKAKLLWICTAGIIL 171 (1279)
Q Consensus 154 ~g~RKlE~li~lLI~lMl 171 (1279)
+|+.|+|.+..++.++++
T Consensus 73 yG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 73 FGHGKAESLAALAQSMFI 90 (299)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 578899988776665544
No 161
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=31.01 E-value=1e+03 Score=28.84 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=23.2
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
+-++.+| +....+..+..+....+..++-.-++.-+.+.+++
T Consensus 70 ~a~~~lG-~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~ 111 (394)
T PF03222_consen 70 MAEKYLG-KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLG 111 (394)
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3567787 45566666666666555555444443344455543
No 162
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=30.59 E-value=1.2e+03 Score=29.48 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=33.8
Q ss_pred HHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 263 SAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 263 VaAavLygtG~~V~tl~dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
..|.-++..|. .|..| .++.-++++..+.+-++..+.....-...-..++..+++.+++++
T Consensus 119 ~~a~~lrr~g~--~T~~d---~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~ 179 (549)
T TIGR02711 119 LIAERLRNLGR--YTFAD---VASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN 179 (549)
T ss_pred HHHHHHHHcCC--ccHHH---HHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 34555555442 34444 467778766666666655544433323334455566777777753
No 163
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=30.48 E-value=1.3e+03 Score=29.74 Aligned_cols=130 Identities=8% Similarity=0.081 Sum_probs=66.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHH---HHHHHHHHHHHHH-
Q 000798 45 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTE---LSVILLDLTMVLG- 120 (1279)
Q Consensus 45 T~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~ae---LAIIaaDIaEVIG- 120 (1279)
|++|.|-.| ++-.-.++++.++..++..+.+|-|-+-+-+..-.-|--||-+.. +|..+. .+++=.-.+.-+|
T Consensus 80 s~l~lGLsw-wq~~~tv~vG~~~~~~f~~lns~~G~~yhIsFpv~sR~sFGiygS--~~pIi~R~vma~vwYg~~awiGg 156 (572)
T KOG2466|consen 80 SALELGLSW-WQTWITVWVGYLFTAIFLVLNSRPGSDYHISFPVLSRSSFGIYGS--LWPIINRVVMACVWYGVNAWIGG 156 (572)
T ss_pred hHHhccCCH-HHHHHHHHHHHHHHHHHHHHccCCCcccccceeeeeeeehhhhHh--HHHHHHHHHHHHhhhhhhhhhhh
Confidence 344555433 233334667777888888889998887776665555655554433 232222 2222222333333
Q ss_pred HHHHHHH--hh----CChh-----------HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 121 IAHGLNL--LM----GVEL-----------STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGV 178 (1279)
Q Consensus 121 iAIALnL--LF----GIPL-----------~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l 178 (1279)
..+.+.| .| ++|- ++|-+|.=++++.++++.- +..|++..+-..+.-...++|++=+
T Consensus 157 ecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~~~~p-~~ir~lf~~ka~~t~fA~~g~LIw~ 230 (572)
T KOG2466|consen 157 ECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFYWFPP-YKIRHLFTWKAVLTPFAAFGFLIWL 230 (572)
T ss_pred hhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhheeeccH-HHhhhHHHHHHhhhHHHHHHHHHHH
Confidence 3443322 11 2332 4455555555555555543 3556666655544445566666533
No 164
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=29.88 E-value=1.3e+03 Score=29.63 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=10.9
Q ss_pred HHHHHHHhcccchhHHHH
Q 000798 201 AFSIMSLLGASMMPHNFY 218 (1279)
Q Consensus 201 l~~aVAIIGATIMPhNfY 218 (1279)
+..+.|++-+.++|...+
T Consensus 193 ~~~~rg~~~~~~~~~~~~ 210 (679)
T TIGR02916 193 VWPARGLVAALVVPLIAV 210 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334567777777776443
No 165
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=29.83 E-value=8.6e+02 Score=27.54 Aligned_cols=83 Identities=12% Similarity=0.211 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHH
Q 000798 367 VMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAV 446 (1279)
Q Consensus 367 Vl~SL~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v 446 (1279)
++.++.--|+...+.++..+..--...|.+.| +.++.+...+++=+.++ +++.+.. . + -++. ++-+.
T Consensus 131 ll~a~vgGfamy~my~y~yr~~ad~sqr~~~~-K~~lv~~~sm~lWi~v~-i~t~~lP--t---s-----lN~~-L~pi~ 197 (226)
T COG4858 131 LLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW-KYLLVAVLSMLLWIAVM-IATVFLP--T---S-----LNPQ-LPPIA 197 (226)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCCchH-HHHHHHHHHHHHHHHHH-HHHhhCC--C---c-----CCcC-CchHH
Confidence 45556666777777777665443334566555 44443333333333344 3333222 1 1 1222 44445
Q ss_pred HHHHHHHHHHHHHHHH
Q 000798 447 FLITTFTSLCLMLWLA 462 (1279)
Q Consensus 447 ~~~~~~~yl~f~lyL~ 462 (1279)
+.++..+.+++=.||=
T Consensus 198 l~IiGav~lalRfylk 213 (226)
T COG4858 198 LTIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556667777777763
No 166
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=29.82 E-value=5.7e+02 Score=32.04 Aligned_cols=25 Identities=16% Similarity=0.180 Sum_probs=19.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000798 53 FGFDLVALMLVFNFAAIFCQYLSARIAVVT 82 (1279)
Q Consensus 53 FGY~LLWVLLLAtI~a~llQ~LAARLGVVT 82 (1279)
..=+++|.+.+++++.|++ |+|+..
T Consensus 249 L~Nk~iW~la~a~vfvYiv-----R~gi~d 273 (448)
T COG2271 249 LKNKLIWLLALANVFVYVV-----RYGIND 273 (448)
T ss_pred HcChHHHHHHHHHHHHHHH-----HHHHhh
Confidence 3447899999999998874 777643
No 167
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=29.49 E-value=1.3e+03 Score=29.40 Aligned_cols=60 Identities=13% Similarity=0.093 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 357 GVYQLLIFTQVMVAIMLPSSVIPLFRVASSR-QIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 423 (1279)
Q Consensus 357 ~l~qLLI~aQVl~SL~LPFALIPLL~LtNsr-~IMGefrNs~~~nILawii~llIi~LNIyfVi~~lf 423 (1279)
+..+|+...+....++.-++.+-++++--++ +.-.++|.+... .++.+++.+++++--++
T Consensus 355 d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~-------p~~~~~~~i~lvvip~~ 415 (479)
T KOG1287|consen 355 DFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFI-------PILFLLICIFLVVIPII 415 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeeh-------HHHHHHHHHHHhheeee
Confidence 4788999988888888888888887763322 222244444432 33344444555544444
No 168
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=29.46 E-value=1.2e+03 Score=29.18 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=45.2
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Q 000798 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILF 147 (1279)
Q Consensus 86 LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt~LL 147 (1279)
+...+...+|++..+++.+...+|+..+-++.+.+.|-=++-++.++..+.+.++.+..+++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~l 328 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVV 328 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 45567778888888888888888888888887777777777666677666666555555444
No 169
>PRK09917 hypothetical protein; Provisional
Probab=29.21 E-value=4.6e+02 Score=28.21 Aligned_cols=79 Identities=15% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHHHHHhhCChh--HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhcccccccc
Q 000798 122 AHGLNLLMGVEL--STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTKF 196 (1279)
Q Consensus 122 AIALnLLFGIPL--~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~---vs~Pd~~eVl~GLVP~l 196 (1279)
++|+.++|+.|. .+.+.+++...|++-++....+.. .....+++.+.++++.+.+ .-.|.-.-.+-|++|-+
T Consensus 21 ~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~~---~~~asfiaa~~igl~s~~~Ar~~k~P~tvf~ip~iiPLV 97 (157)
T PRK09917 21 AVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGLN---IEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMF 97 (157)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCc---HHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeHhhHHhcC
Confidence 466777898864 233333444454432221111111 2223333333444443332 22354445567888989
Q ss_pred CCChHHH
Q 000798 197 SGDSAFS 203 (1279)
Q Consensus 197 p~~sl~~ 203 (1279)
|+...|-
T Consensus 98 PG~~~Y~ 104 (157)
T PRK09917 98 PGISAYT 104 (157)
T ss_pred CCHHHHH
Confidence 9877664
No 170
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=28.54 E-value=1e+03 Score=28.03 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=38.4
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHH
Q 000798 42 KWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWTCVFIGV 104 (1279)
Q Consensus 42 nIaT~lQAGA~FGY~LLWVLLLAtI~a~ll-Q~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI 104 (1279)
.|...+..=..+.-..+|++.+..++..++ -..+.|+.+...+.-.++.|- .|-.-..+.+.
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~i~ntir~~v~~r~~ei~im~~-~GAt~~~I~~~ 228 (309)
T PRK11026 166 SWFARLAALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFSRRDTINVMKL-IGATDGFILRP 228 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCChHHHHHH
Confidence 566665555554444566655555555444 556899999999888888764 56443344333
No 171
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=27.95 E-value=9.3e+02 Score=30.99 Aligned_cols=16 Identities=13% Similarity=0.061 Sum_probs=8.3
Q ss_pred HHHHhhhhHHHHHhhh
Q 000798 21 YRLVPAVLPVLLISIG 36 (1279)
Q Consensus 21 rklLa~lGPGfLvSiA 36 (1279)
.+.+..++++|....-
T Consensus 11 ~~~~l~ll~a~~~~l~ 26 (555)
T COG2194 11 TKLSLSLLLAWYFLLL 26 (555)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444456666655543
No 172
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=27.70 E-value=1.3e+03 Score=29.03 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=28.0
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000798 280 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 280 dAa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
...+.|+..++++..+.+-++..+.+...-...-..++..+++.++++
T Consensus 96 T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi 143 (552)
T TIGR03648 96 TVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEV 143 (552)
T ss_pred cHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345568888886655655554444433333333345567777888775
No 173
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=27.14 E-value=1.4e+03 Score=29.02 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000798 357 GVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 357 ~l~qLLI~aQVl~SL~LPFALIPLL~L 383 (1279)
+...|+++...+.++..+.....+..+
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmy 140 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMY 140 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 357889999999998888877654444
No 174
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=26.86 E-value=3.5e+02 Score=30.13 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000798 371 IMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 371 L~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfV 418 (1279)
++|-+.++..++|.|+| +.++.+.+.|....+++++-+-.+
T Consensus 119 l~Lal~~~~~iyfl~~K-------~~~~~rA~~~~~~~L~~G~~lGs~ 159 (194)
T PF11833_consen 119 LQLALGLGACIYFLNRK-------ERKLGRAFLWTLGGLVVGLILGSL 159 (194)
T ss_pred hHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777888898976 556677777777777666644333
No 175
>TIGR00930 2a30 K-Cl cotransporter.
Probab=26.76 E-value=1.8e+03 Score=30.29 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 000798 447 FLITTFTSLCLMLW 460 (1279)
Q Consensus 447 ~~~~~~~yl~f~ly 460 (1279)
+++++++|+++.+.
T Consensus 321 i~i~~vlYllv~~~ 334 (953)
T TIGR00930 321 ILTTTVVYLGSVVL 334 (953)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455566666543
No 176
>PRK03557 zinc transporter ZitB; Provisional
Probab=26.66 E-value=1.1e+03 Score=27.67 Aligned_cols=162 Identities=9% Similarity=0.038 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHhccc------hhHHHHHHHHHHHHHHHHHH
Q 000798 102 IGVQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQ------LENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 102 LwI~aeLAIIaaDIaEVIGiAIALnLLF--GIPL~~gVLITavdt~LLL~lgsy------~g~RKlE~li~lLI~lMlLs 173 (1279)
+|+...+.++.+-+.-+.|...+-..++ ++.-..-++..++..+.+-+..+. +|+.|+|.+..++.+++++.
T Consensus 21 ~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D~~~~~~~l~a~~~s~kp~d~~hpyG~~r~E~l~al~~~~~l~~ 100 (312)
T PRK03557 21 LLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTDAAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVV 100 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCchHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHhhCCChhhhccccc-cccCCChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhhhhhHHHHHHHHHHH
Q 000798 174 YVLGVLISQPEIPLSVNGML-TKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSG 252 (1279)
Q Consensus 174 FVi~l~vs~Pd~~eVl~GLV-P~lp~~sl~~aVAIIGATIMPhNfYLHSaLVqsR~~~~~~~~~a~~~D~~~~il~i~lg 252 (1279)
..+.++. +.+..++ |.-......++++++|..+.-..+|+--..-+.+...-.......+.|.+.+...++.+
T Consensus 101 ~~~~i~~------eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~l~s~~vlv~~ 174 (312)
T PRK03557 101 ITILIVW------EAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHVLGDLLGSVGAIIAA 174 (312)
T ss_pred HHHHHHH------HHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH--------HHHHHHHHHhhc
Q 000798 253 IYMVN--------YVLMNSAANLFY 269 (1279)
Q Consensus 253 sfLIN--------laVViVaAavLy 269 (1279)
.+... ++-++++..+++
T Consensus 175 ~~~~~~g~~~~Dpi~~ilis~~i~~ 199 (312)
T PRK03557 175 LIIIWTGWTPADPILSILVSVLVLR 199 (312)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHH
No 177
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=26.28 E-value=6.3e+02 Score=32.02 Aligned_cols=18 Identities=0% Similarity=-0.058 Sum_probs=6.8
Q ss_pred HHHHHHHHHhHHHHHHHH
Q 000798 298 FVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 298 FAIGLLAAGqSSTITgTl 315 (1279)
+++-++.++.++-.+.+|
T Consensus 78 ~~~l~~~~a~~~yf~~~y 95 (522)
T PRK09598 78 AIVFSLLNSIAFYFINTY 95 (522)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 333333333333333343
No 178
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=26.21 E-value=1e+03 Score=27.25 Aligned_cols=45 Identities=22% Similarity=0.177 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHH
Q 000798 118 VLGIAHGLNLLMGVELSTCVFLAA-ADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 118 VIGiAIALnLLFGIPL~~gVLITa-vdt~LLL~lgsy~g~RKlE~li~l 165 (1279)
+.|.++|+ ++|+|+.++.++.+ +.++++-++.+ +..-+.+.++..
T Consensus 43 ~~G~~la~--~l~~~~~~~a~~~~~l~a~~i~~l~~-~~~~~~d~~iGi 88 (261)
T PRK09543 43 LLGVAFGL--LLDVNPFYAVIAVTLLLAGGLVWLEK-RPQLAIDTLLGI 88 (261)
T ss_pred HHHHHHHH--HHcchHHHHHHHHHHHHHHHHHHHHH-hcCCchHHHHHH
Confidence 33565554 67886655554444 44444444432 222233555443
No 179
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.74 E-value=1.6e+03 Score=29.29 Aligned_cols=152 Identities=22% Similarity=0.296 Sum_probs=72.8
Q ss_pred HHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000798 22 RLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 22 klLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~ 101 (1279)
-+...++-=+..+.|.+-|.+=-+-+.+. +++-.+++++-=+.++|+--.+ +|+.|...
T Consensus 340 ~l~M~~vti~fA~lGflSPs~RGsLmT~~----------~~l~v~~G~~agY~s~rlyk~~-----------~g~~wk~~ 398 (628)
T KOG1278|consen 340 LLGMILVTIFFACLGFLSPSSRGSLMTAM----------VLLFVFMGFVAGYVSARLYKTF-----------KGREWKRN 398 (628)
T ss_pred hhHHHHHHHHHHHhccCCccccccHHHHH----------HHHHHHHHHhhhhhhhhhHhhh-----------cCCcchhh
Confidence 34445555566677777775533222221 3344445555555666654433 45555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000798 102 IGVQTELSVILLDLTMVLGIAHGLNLLM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 180 (1279)
Q Consensus 102 LwI~aeLAIIaaDIaEVIGiAIALnLLF-GIPL~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l~v 180 (1279)
+|..+.+.= +-+.++...+|.++ |-.--.+|++.....+++||++ ..+=++|+..++-
T Consensus 399 ~~lta~l~P-----Givf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~----------------isVPLsf~G~y~g 457 (628)
T KOG1278|consen 399 AILTAFLFP-----GIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFG----------------ISVPLSFVGGYFG 457 (628)
T ss_pred HHhhhhhcc-----hHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHH----------------hhhhHHHhhHHhh
Confidence 433221110 11234455566544 3222223333333333444431 1234555555443
Q ss_pred h-CCChhh-hccccccc-cCCChHHH--HHHHhcccchhH
Q 000798 181 S-QPEIPL-SVNGMLTK-FSGDSAFS--IMSLLGASMMPH 215 (1279)
Q Consensus 181 s-~Pd~~e-Vl~GLVP~-lp~~sl~~--aVAIIGATIMPh 215 (1279)
. +|.+.. +-.--+|+ +|....++ ..+++.|-|.|.
T Consensus 458 ~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPF 497 (628)
T KOG1278|consen 458 FKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPF 497 (628)
T ss_pred ccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccch
Confidence 2 355543 33334664 67766665 677777777776
No 180
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=25.46 E-value=1.3e+03 Score=30.15 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHH
Q 000798 137 VFLAAADAILFPFFAGQLENYKAKLLWI 164 (1279)
Q Consensus 137 VLITavdt~LLL~lgsy~g~RKlE~li~ 164 (1279)
++|++++ ++.||..+++|-.|+.+++.
T Consensus 144 vpit~~I-Lv~LF~iQ~~GT~~vG~~Fg 170 (622)
T PRK10745 144 VPLSIIV-LTLLFMIQKHGTGMVGKLFA 170 (622)
T ss_pred HHHHHHH-HHHHHHHhccccHHHhhhhh
Confidence 4444443 33445556778889877764
No 181
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=25.38 E-value=5.7e+02 Score=27.34 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=23.1
Q ss_pred hHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHh
Q 000798 42 KWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGE 92 (1279)
Q Consensus 42 nIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe 92 (1279)
.+..-...|...|+ +|++++..+.+++=-.+..+-|..+-+.+.+..++
T Consensus 15 Ei~~~i~v~~~iG~--~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~ 63 (148)
T PRK11463 15 EIAVFIAVASVIGV--GWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLAR 63 (148)
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45556667777774 33333333333333333344455444455555554
No 182
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=25.22 E-value=2e+02 Score=29.99 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=44.7
Q ss_pred HHhhCChhHHHHHHHHHHHHHHHHhccchhHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhhhcccc--ccc-----cC
Q 000798 126 NLLMGVELSTCVFLAAADAILFPFFAGQLENYKA-KLLWICTAGIILLSYVLGVLISQPEIPLSVNGM--LTK-----FS 197 (1279)
Q Consensus 126 nLLFGIPL~~gVLITavdt~LLL~lgsy~g~RKl-E~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GL--VP~-----lp 197 (1279)
..++|+|+..-..+..+ .++...+....++. +.+...++......++.+++..+|-..-++-++ +-. -+
T Consensus 16 ~~~~~~~~p~~~pvf~~---~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~~~~~f~~~~~~ 92 (140)
T PF11168_consen 16 SKLFGWPLPFFAPVFPA---ILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLLFFWSFYRMSRG 92 (140)
T ss_pred HHHHCCCchHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 34567766543333222 22222232333443 333333334445556666666667544333332 111 13
Q ss_pred CChHHHHHHHhcccchhHH
Q 000798 198 GDSAFSIMSLLGASMMPHN 216 (1279)
Q Consensus 198 ~~sl~~aVAIIGATIMPhN 216 (1279)
+..++..+++++.+++||.
T Consensus 93 ~~~l~~~~~lv~~~ii~~f 111 (140)
T PF11168_consen 93 PKFLFGTMLLVGLSIIPVF 111 (140)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 4567778999999999984
No 183
>COG4325 Predicted membrane protein [Function unknown]
Probab=24.57 E-value=5.1e+02 Score=32.04 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred hhHHHHHHHH-----HHHHHHHHHHHHHHHHhhCCChh--hhccccccccCC-ChHHHHHHHhcccchhHHHHHhH
Q 000798 154 LENYKAKLLW-----ICTAGIILLSYVLGVLISQPEIP--LSVNGMLTKFSG-DSAFSIMSLLGASMMPHNFYLHS 221 (1279)
Q Consensus 154 ~g~RKlE~li-----~lLI~lMlLsFVi~l~vs~Pd~~--eVl~GLVP~lp~-~sl~~aVAIIGATIMPhNfYLHS 221 (1279)
.+-|.+..++ -..+++.+.+|++.++.-+--|. +-..+|+|++.- .+++.++.-||. +.+|+|-
T Consensus 112 fsPRll~~fmrd~~nqvvLa~FlctFvysl~vlrtvg~e~d~~g~FIp~~avtv~lLlaiisig~----~iyfl~~ 183 (464)
T COG4325 112 FSPRLLRTFLRDVPNQVVLAIFLCTFVYSLGVLRTVGEERDGQGAFIPKVAVTVSLLLAIISIGA----LIYFLHH 183 (464)
T ss_pred CCHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhhccCccccceehHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 3445554443 13334456668777765443333 223678898753 345555666664 3445543
No 184
>PRK09586 murP PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed
Probab=24.10 E-value=1.2e+03 Score=29.54 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=43.5
Q ss_pred hhCChh--HHHHHHHHHHHHHHHHhccchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc---cccC
Q 000798 128 LMGVEL--STCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---TKFS 197 (1279)
Q Consensus 128 LFGIPL--~~gVLITavdt~LLL~lgsy~g~RKl-----E~li~lLI~lMlLsFVi~l~vs~Pd~~eVl~GLV---P~lp 197 (1279)
+||+|. ...|+-..+.+|++-++.+ ..||. +.++.-++ .+++++.+.+++..|=..-+.+++- -.+-
T Consensus 220 ~fGi~i~y~~sViPiil~v~~~s~iek--~~~K~iP~~l~~i~~P~l-tlli~~p~~l~viGP~g~~i~~~i~~~~~~l~ 296 (476)
T PRK09586 220 FFGLPIDPRGNIIGVLIAAIAGARIER--MVRRFMPDDLDMILTSLI-TLLITGALAFLIIMPLGGWLFEGMSWLFMHLN 296 (476)
T ss_pred hcCccccCCcchHHHHHHHHHHHHHHH--HHHhhCHHHHHHHHHHHH-HHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 567643 2345445555566555543 33442 33333332 3455555666667775433333321 1111
Q ss_pred CChHHHHHHHhcccchhHHHH-HhHHhh
Q 000798 198 GDSAFSIMSLLGASMMPHNFY-LHSSIV 224 (1279)
Q Consensus 198 ~~sl~~aVAIIGATIMPhNfY-LHSaLV 224 (1279)
...++.+++|+.--|-.++ +|-+++
T Consensus 297 --~~~~~~~i~g~~~~~lV~~G~H~~~~ 322 (476)
T PRK09586 297 --SNPFGCAVLAGLFLIAVVFGVHQGFI 322 (476)
T ss_pred --hhHHHHHHHHHHHHHHhHhccchhhh
Confidence 1134567777755444333 566553
No 185
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.09 E-value=8.5e+02 Score=34.54 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=6.2
Q ss_pred HHHhHhHHHHHHH
Q 000798 49 GGAHFGFDLVALM 61 (1279)
Q Consensus 49 AGA~FGY~LLWVL 61 (1279)
.||.+..-|++++
T Consensus 67 VGA~LAD~L~~LF 79 (1355)
T PRK10263 67 PGAWLADTLFFIF 79 (1355)
T ss_pred HHHHHHHHHHHHH
Confidence 4555544444433
No 186
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=24.01 E-value=7.3e+02 Score=30.83 Aligned_cols=53 Identities=15% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHH
Q 000798 49 GGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 105 (1279)
Q Consensus 49 AGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~LwI~ 105 (1279)
.+-.|...|+-++.+|-.+++....++ ..||.++...+..-+|..+-.++.+.
T Consensus 95 ~~~vF~lsll~iiPLA~~l~~ateqls----~~tg~tvGgllNAtfGnaiElii~il 147 (441)
T KOG1397|consen 95 KGWVFLLSLLGIIPLAERLGFATEQLS----AYTGPTVGGLLNATFGNAIELIIYIL 147 (441)
T ss_pred chHHHHHHHhhhhhHHHHHHHHHHHHH----hhcCCcHHHHHhhhhccHHHHHHHHH
Confidence 345677777777777777776665555 56999999999999998776665443
No 187
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=23.99 E-value=1.2e+03 Score=27.32 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=20.8
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 281 Aa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTl 315 (1279)
..+..+..+| +++.++.++.++........+...
T Consensus 61 ~~~~~~~~~G-~~~g~~~~~~~~~~~~~~~~ay~~ 94 (381)
T TIGR00837 61 FNTIAKDLLG-KTGNIIAGLSLLFVLYILTYAYIS 94 (381)
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777 677777777666665555544333
No 188
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=23.93 E-value=7.1e+02 Score=29.07 Aligned_cols=16 Identities=44% Similarity=0.681 Sum_probs=8.2
Q ss_pred HHHHHHH-HHHHHHHHH
Q 000798 62 LVFNFAA-IFCQYLSAR 77 (1279)
Q Consensus 62 LLAtI~a-~llQ~LAAR 77 (1279)
++-|++. +++-.+++|
T Consensus 9 ~l~Nf~~d~~LL~~t~~ 25 (288)
T TIGR02854 9 FLENFIIDYFLLYLTAR 25 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 3344433 566666655
No 189
>PF01654 Bac_Ubq_Cox: Bacterial Cytochrome Ubiquinol Oxidase; InterPro: IPR002585 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. Subunit I binds a single b-haem, through ligands at His186 and Met393 (using P0ABJ9 from SWISSPROT numbering). In addition His19 is a ligand for the haem b found in subunit II (IPR003317 from INTERPRO).; GO: 0016020 membrane
Probab=23.75 E-value=1.5e+03 Score=28.26 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=24.6
Q ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 000798 391 GVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVG 430 (1279)
Q Consensus 391 GefrNs~~~nILawii~llIi~LNIyfVi~~lfg~s~w~~ 430 (1279)
|..+++++.+.+.+.+.+-.+..-.-.++..+ |+..|+.
T Consensus 348 ~~~~~r~~l~~~~~~~plp~iA~~~GW~~~E~-GRQPWiV 386 (436)
T PF01654_consen 348 GRLSSRWFLRLLVWSIPLPFIANEAGWIVTEV-GRQPWIV 386 (436)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHhchheEecc-CcCCeEE
Confidence 33457777777777777665555444444443 7788866
No 190
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=23.55 E-value=3.6e+02 Score=35.55 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000798 371 IMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGN 425 (1279)
Q Consensus 371 L~LPFALIPLL~LtNsr~IMGefrNs~~~nILawii~llIi~LNIyfVi~~lfg~ 425 (1279)
++|.+++...+.+++.| +...=+.++++++++...+++...++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~f~G~ 49 (703)
T PRK12363 5 LLLSLLLLLWLLVASPR----------LAWLKAGLLSLFLLLLSAWGLVDRLSGD 49 (703)
T ss_pred HHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 44566666666665533 3444455567777777778888878876
No 191
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=23.27 E-value=8.4e+02 Score=25.55 Aligned_cols=27 Identities=7% Similarity=-0.002 Sum_probs=18.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000798 300 LVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 300 IGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
++.-+-...|.=|++=.+.++++++++
T Consensus 13 l~v~~f~lTtlDTa~Rl~R~~~~E~~~ 39 (127)
T PF13722_consen 13 LFVAAFALTTLDTATRLARYIIQELFG 39 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333445556677778999999988
No 192
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=23.20 E-value=3.7e+02 Score=27.45 Aligned_cols=79 Identities=14% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHHhhCChh--HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH---HhhCCChhhhcccccccc
Q 000798 122 AHGLNLLMGVEL--STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGV---LISQPEIPLSVNGMLTKF 196 (1279)
Q Consensus 122 AIALnLLFGIPL--~~gVLITavdt~LLL~lgsy~g~RKlE~li~lLI~lMlLsFVi~l---~vs~Pd~~eVl~GLVP~l 196 (1279)
++++.++|+.|. +..+.+.+...++.-++....+. ...+..+++.+++.+.-+. ..-.|...-++.|++|-+
T Consensus 10 ~~~fai~f~~~~r~l~~~~l~g~~~~~v~~~~~~~~~---~~~~a~f~aa~~vg~~~~~~ar~~~~P~~v~~vpgiipLV 86 (130)
T PF12821_consen 10 AIGFAILFNAPRRALPWAGLIGALGWLVYLLLSAFGL---GSFVATFVAAFVVGLLAELFARRLKAPATVFIVPGIIPLV 86 (130)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHhccCchHHhhccchheeC
Confidence 556667887753 33344445555555443222111 1222333333333333333 233465556678888888
Q ss_pred CCChHHH
Q 000798 197 SGDSAFS 203 (1279)
Q Consensus 197 p~~sl~~ 203 (1279)
|+...|.
T Consensus 87 PG~~~y~ 93 (130)
T PF12821_consen 87 PGSLAYR 93 (130)
T ss_pred CcHHHHH
Confidence 9865553
No 193
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=23.15 E-value=1.5e+03 Score=28.19 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=43.6
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHH
Q 000798 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILF 147 (1279)
Q Consensus 86 LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFG-IPL~~gVLITavdt~LL 147 (1279)
|.+..+..+|+...+++.+.+.+|++.+-++=+..+|-=++-++. ++....+.++.+..+++
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~i 325 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFII 325 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 566667778888888888888888888877766666666666666 56666666666555544
No 194
>PRK11021 putative transporter; Provisional
Probab=22.93 E-value=1.3e+03 Score=27.40 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000798 64 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 64 AtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~~L 102 (1279)
..+.++.+-|++.++-. +| +...-.++.+|+.+.++.
T Consensus 45 ~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~~ 81 (410)
T PRK11021 45 IFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRVT 81 (410)
T ss_pred HHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHHH
Confidence 34444555566666543 34 566777888888776543
No 195
>PF04224 DUF417: Protein of unknown function, DUF417; InterPro: IPR007339 This family of uncharacterised proteins appears to be restricted to proteobacteria.
Probab=22.82 E-value=2.4e+02 Score=31.14 Aligned_cols=44 Identities=25% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHH--HHHhcccc
Q 000798 165 CTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSI--MSLLGASM 212 (1279)
Q Consensus 165 lLI~lMlLsFVi~l~vs~Pd~~eVl~GLVP~lp~~sl~~a--VAIIGATI 212 (1279)
+++.++.++|++ .-|+.-+...|=+|-+++..-+++ +.++|+-+
T Consensus 119 ~~~flvTLSFL~----TTP~vw~~~~GGFP~Lsg~g~fllKDivlLa~~l 164 (175)
T PF04224_consen 119 FGTFLVTLSFLF----TTPGVWVPSLGGFPYLSGAGRFLLKDIVLLAASL 164 (175)
T ss_pred HHHHHHHHHHHh----cCCCeeeccCCCCceecCCCchHHHHHHHHHHHH
Confidence 333344555553 667633333344677765443333 66666543
No 196
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=22.81 E-value=1.6e+03 Score=28.26 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcH-HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-Ch
Q 000798 56 DLVALMLVFNFAAI-FCQYLSARIAVVTGKDL-AQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VE 132 (1279)
Q Consensus 56 ~LLWVLLLAtI~a~-llQ~LAARLGVVTGk~L-AEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFG-IP 132 (1279)
+-.|...+..++.. ++..+.+=...++|+.- +......+|. ...+.-+.+.++.+.++.-+.=+.++++..+++ ++
T Consensus 227 ~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~ 305 (442)
T COG1457 227 KAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLS 305 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhh
Confidence 55555555555444 66777888888899887 6655556665 333444555667777766666677777766665 44
Q ss_pred h
Q 000798 133 L 133 (1279)
Q Consensus 133 L 133 (1279)
.
T Consensus 306 k 306 (442)
T COG1457 306 K 306 (442)
T ss_pred h
Confidence 3
No 197
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=22.62 E-value=5.5e+02 Score=27.07 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHH
Q 000798 295 PFAFVLVLFFSNQIIAVNWNLS 316 (1279)
Q Consensus 295 ~iLFAIGLLAAGqSSTITgTlA 316 (1279)
++++++-++.++..+-.+.+|+
T Consensus 20 K~~~~~l~l~sa~~~yf~~~Yg 41 (156)
T PF08019_consen 20 KPLLILLLLLSAIASYFMDTYG 41 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 3344433444444444444443
No 198
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=22.47 E-value=7.8e+02 Score=29.66 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000798 343 IVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASS 386 (1279)
Q Consensus 343 IIPALiVal~~G~~~l~qLLI~aQVl~SL~LPFALIPLL~LtNs 386 (1279)
++|.++-.+..+.-+....-.+-|+++.+++||++.-+++-...
T Consensus 142 ~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~r~~~~ 185 (319)
T COG0385 142 LTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLP 185 (319)
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45766544333211223344567899999999999988765444
No 199
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=22.37 E-value=6.7e+02 Score=25.76 Aligned_cols=27 Identities=15% Similarity=0.119 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHHHHhccchhHHH
Q 000798 132 ELSTCVFLAAADAILFPFFAGQLENYK 158 (1279)
Q Consensus 132 PL~~gVLITavdt~LLL~lgsy~g~RK 158 (1279)
+.|.|+-+.+....-+++++......|
T Consensus 61 AiW~GiG~v~~~l~g~~~f~E~l~~~~ 87 (106)
T COG2076 61 AIWTGIGIVGTALVGVLLFGESLSLIK 87 (106)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcCCHHH
Confidence 457776666666666667765443344
No 200
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=22.20 E-value=1.7e+03 Score=28.36 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=24.1
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhhCC-CcCCchHHHH
Q 000798 284 LMEQVFRSPVVPFAFVLVLFFSNQII-AVNWNLSGQVVLQDFLRL-DIPGWLHHAT 337 (1279)
Q Consensus 284 aLepvLGg~~A~iLFAIGLLAAGqSS-TITgTlAGq~VmeGFL~l-ri~~w~RrLi 337 (1279)
.+...+|..+|..---+.++..--.+ ++....-++++++.|+.. .++++..+++
T Consensus 83 yi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~ll 138 (479)
T KOG1287|consen 83 YISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLL 138 (479)
T ss_pred hHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHH
Confidence 35556774444322222222222222 333333457777777652 3445555543
No 201
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=22.12 E-value=1.6e+03 Score=28.23 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=49.0
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 000798 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILFPFFAGQLENYKAKL 161 (1279)
Q Consensus 86 LAEicRe~YgK~~~~~LwI~aeLAIIaaDIaEVIGiAIALnLLFG-IPL~~gVLITavdt~LLL~lgsy~g~RKlE~ 161 (1279)
|.+.-+..+|+...+++.+...+|++.+.++-+..+|-=++-++. +....++.++.+..+++- ..|..++-+
T Consensus 265 L~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflva----n~GL~~Ii~ 337 (431)
T COG1114 265 LSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVA----NLGLEQIIK 337 (431)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH----HhhHHHHHH
Confidence 556666678888888898888888888887766556655665655 566666776676665543 235555533
No 202
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=21.69 E-value=4.5e+02 Score=29.62 Aligned_cols=18 Identities=28% Similarity=0.717 Sum_probs=14.3
Q ss_pred HHHHHhcccchhHHHHHh
Q 000798 203 SIMSLLGASMMPHNFYLH 220 (1279)
Q Consensus 203 ~aVAIIGATIMPhNfYLH 220 (1279)
.+..++|+++..--+|+.
T Consensus 196 i~l~IiGav~lalRfylk 213 (226)
T COG4858 196 IALTIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578899999888777773
No 203
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=21.68 E-value=1.6e+03 Score=27.74 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=27.7
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 281 Aa~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
..+.++..+|++....+.++..+...+.-......++..+++.+++++
T Consensus 110 ~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~ 157 (483)
T PRK09442 110 LNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGIS 157 (483)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344578888876666666655444333223333445667777777754
No 204
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=21.26 E-value=1.8e+03 Score=28.34 Aligned_cols=21 Identities=10% Similarity=-0.015 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 000798 447 FLITTFTSLCLMLWLATTPLR 467 (1279)
Q Consensus 447 ~~~~~~~yl~f~lyL~~~pl~ 467 (1279)
+++++++|+...++...+..+
T Consensus 430 f~~~~~i~~~~~~~~~~~~~~ 450 (511)
T TIGR00806 430 FLVLSIICFFGAGLDGLRYCK 450 (511)
T ss_pred HHHHHHHHHHHHHHHHhhhhc
Confidence 444555555555555554443
No 205
>PRK11375 allantoin permease; Provisional
Probab=21.07 E-value=1.3e+03 Score=28.69 Aligned_cols=24 Identities=8% Similarity=0.066 Sum_probs=11.2
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhh
Q 000798 106 TELSVILLDL-TMVLGIAHGLNLLM 129 (1279)
Q Consensus 106 aeLAIIaaDI-aEVIGiAIALnLLF 129 (1279)
..++.+++++ +++...+..+..+|
T Consensus 317 ~v~a~~~tN~~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 317 ILMTTISTNATGNIIPAGYQIAALA 341 (484)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHhC
Confidence 3444444443 34555555554444
No 206
>PRK09395 actP acetate permease; Provisional
Probab=20.59 E-value=1.8e+03 Score=27.97 Aligned_cols=47 Identities=4% Similarity=-0.011 Sum_probs=25.7
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 282 a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
.+.++.-+|++..+.+-++..+.....-..+-..+...+++.+++++
T Consensus 135 ~d~l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~ 181 (551)
T PRK09395 135 ADVASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLN 181 (551)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44577788866666665554443333323333445556677777653
No 207
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=20.49 E-value=2.7e+03 Score=30.06 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=9.5
Q ss_pred cccchhh--HHHHHHHHHHH
Q 000798 1129 EATSIAD--AEAKLLQSFRV 1146 (1279)
Q Consensus 1129 ~~~s~~~--~e~~llqs~r~ 1146 (1279)
|+||-.| .|+++.+.+|.
T Consensus 1379 EaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271 1379 EPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred CCcccCCHHHHHHHHHHHHH
Confidence 5555544 34555555554
No 208
>PRK00816 rnfD electron transport complex protein RnfD; Reviewed
Probab=20.44 E-value=5.3e+02 Score=31.33 Aligned_cols=85 Identities=11% Similarity=0.124 Sum_probs=53.6
Q ss_pred HHHHhhhhHHHHHhhhccccchHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000798 21 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 21 rklLa~lGPGfLvSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLAtI~a~llQ~LAARLGVVTGk~LAEicRe~YgK~~~~ 100 (1279)
+..+-.+=|++++++- .||++-+++++++++.+++++.+..|+ .+|...+.+.+ .-
T Consensus 21 ~~VllALlP~~~~~i~---------------~fG~~al~~~~~~v~~av~~E~l~~k~---~~k~~~~~l~D----~S-- 76 (350)
T PRK00816 21 LWVILAALPGIAAQTY---------------FFGWGTLIQILLAIVTALLAEAAVLKL---RKRPVAATLKD----NS-- 76 (350)
T ss_pred HHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCccccCc----cc--
Confidence 3344456788887664 789999999999999999999888775 22322221111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Q 000798 101 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADA 144 (1279)
Q Consensus 101 ~LwI~aeLAIIaaDIaEVIGiAIALnLLFGIPL~~gVLITavdt 144 (1279)
+-+.|.-+|+++--..|+|..++-+++.+
T Consensus 77 ---------------a~vTglLlal~lPp~~P~W~~~iG~~fAI 105 (350)
T PRK00816 77 ---------------ALLTALLLAVSIPPLAPWWMIVIGTVFAI 105 (350)
T ss_pred ---------------HHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 11235566666544568887766555443
No 209
>PLN03130 ABC transporter C family member; Provisional
Probab=20.35 E-value=2.8e+03 Score=30.23 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=13.2
Q ss_pred cccccchhh--HHHHHHHHHHH
Q 000798 1127 SQEATSIAD--AEAKLLQSFRV 1146 (1279)
Q Consensus 1127 ~~~~~s~~~--~e~~llqs~r~ 1146 (1279)
-.|+||-.| .|+++.+.+|.
T Consensus 1398 LDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130 1398 LDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
Confidence 357777755 45677777775
No 210
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=20.24 E-value=1.4e+02 Score=31.23 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccccCcchhhcccchhhhhc
Q 000798 442 LPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARY 501 (1279)
Q Consensus 442 ~~~~v~~~~~~~yl~f~lyL~~~pl~s~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 501 (1279)
++-.+-.++-++-++|++|++++|+.....+.+.. +.+.|....|+..++|++-
T Consensus 70 yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~------~~~~~~~~~~~~ll~eIrd 123 (128)
T PF01741_consen 70 YGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE------EAEAPAPKTCEELLTEIRD 123 (128)
T ss_dssp HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S----------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------ccCCCCCCchHHHHHHHHH
Confidence 45556666777888999999999987774333322 1123334455556666553
No 211
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=20.21 E-value=1.5e+03 Score=27.01 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=27.9
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000798 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 282 a~aLepvLGg~~A~iLFAIGLLAAGqSSTITgTlAGq~VmeGFL~lr 328 (1279)
.+.++..+|++..+.+.++..+.........-..+...+++.+++++
T Consensus 69 ~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~ 115 (407)
T TIGR00813 69 PEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLD 115 (407)
T ss_pred hHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 34578888855666666655544444444444555566777777653
No 212
>COG5522 Predicted integral membrane protein [Function unknown]
Probab=20.20 E-value=9.2e+02 Score=27.72 Aligned_cols=66 Identities=14% Similarity=0.139 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccc-----CCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccccC
Q 000798 407 FMGMLGLKLIFMVEMIFGNSDWVGNLRW-----NSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASSRN 473 (1279)
Q Consensus 407 ~llIi~LNIyfVi~~lfg~s~w~~~l~~-----~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s~~~~~ 473 (1279)
.+++.+++++|+-..+..+=-.+.+=+. ..-.|+. .|++....+..-+.|++|+-++++|+..+++
T Consensus 162 ~~~~lg~~~lfinrrLGtNYlylsk~P~~~sildvlgpwp-~Yivs~v~ilca~~f~lyllfr~~kk~~~~~ 232 (236)
T COG5522 162 VAISLGIMCLFINRRLGTNYLYLSKEPESASILDVLGPWP-FYIVSEVLILCAVWFLLYLLFRKLKKTYRPA 232 (236)
T ss_pred HHHHHHHHHHHHHHHhcCceeEeecCCCchhHHHHhcCcc-HHHHHHHHHHHHHHHHHHHhccccccccCcc
Confidence 4455566666665544322112222111 1122333 3555555555557788999999999886543
No 213
>PF03619 Solute_trans_a: Organic solute transporter Ostalpha; InterPro: IPR005178 This is a family of mainly hypothetical proteins of no known function.
Probab=20.06 E-value=6.9e+02 Score=28.68 Aligned_cols=50 Identities=16% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHH
Q 000798 301 VLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVW 351 (1279)
Q Consensus 301 GLLAAGqSSTITgTlAGq~VmeGFL~lri~~w~RrLitRlIAIIPALiVal 351 (1279)
+++.||..+.++..++..-+.+.+.+.+.| ..+|.+.|++.++|...+..
T Consensus 4 ~~~ia~~~~~~~~~is~~~i~~hl~~y~~P-~~Qr~iirIl~m~Piyai~S 53 (274)
T PF03619_consen 4 AWIIAGIFALLTILISLFLIYQHLRNYSKP-EEQRYIIRILLMVPIYAICS 53 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhHHHHHHH
Confidence 455666677777777766677777676644 44566777888888766543
No 214
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=20.01 E-value=9.9e+02 Score=29.02 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhh
Q 000798 310 AVNWNLSGQVVLQDF 324 (1279)
Q Consensus 310 TITgTlAGq~VmeGF 324 (1279)
.+++.+|..++..||
T Consensus 188 ~i~~~iG~yll~kGf 202 (344)
T PF04123_consen 188 IILLLIGLYLLYKGF 202 (344)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455666777776
Done!