Query 000798
Match_columns 1279
No_of_seqs 226 out of 1321
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 17:34:19 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000798.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_567-571//hhsearch_pdb/000798hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 1.0 1 1 86.3 37.3 330 31-383 34-381 (501)
2 3dh4_A Sodium/glucose cotransp 1.0 1 1 76.5 31.5 346 33-386 31-420 (530)
3 2xq2_A Sodium/glucose cotransp 1.0 1 1 68.8 40.4 119 34-155 61-184 (593)
4 3l1l_A Arginine/agmatine antip 1.0 1 1 57.1 40.9 42 281-323 262-303 (445)
5 3gia_A Uncharacterized protein 1.0 1 1 53.0 38.0 40 281-321 260-299 (444)
6 4djk_A Probable glutamate/gamm 1.0 1 1 51.4 38.6 85 37-128 26-117 (511)
7 2a65_A Leutaa, Na(+):neurotran 1.0 1 1 34.5 33.4 122 291-420 337-470 (519)
8 4ain_A Glycine betaine transpo 1.0 1 1 26.6 14.8 50 34-85 35-90 (539)
9 2lam_A Cyclotide CTER M; insec 1.0 1 1 19.6 0.9 12 1227-1238 2-13 (29)
10 2gj0_A Cycloviolacin O14; cycl 1.0 1 1 19.3 -1.0 13 1226-1238 2-14 (31)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=1.00 E-value=1 Score=86.34 Aligned_cols=330 Identities=9% Similarity=-0.013 Sum_probs=156.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9776632365448898898996867---8999999999999999999988897509869999972328425889999999
Q 000798 31 LLISIGYVDPGKWAVIIEGGAHFGF---DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTE 107 (1279)
Q Consensus 31 lLVSiAyIDPGnIaS~lqAGA~FGY---sLLWVLLLstIi~illQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~ae 107 (1279)
.+...+-+..+++.......+ |. +-++.+++++++..++-.+.+++|..+|.......|..||++.+.+..+...
T Consensus 34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~ 111 (501)
T 2jln_A 34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA 111 (501)
T ss_dssp HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999988999999998835--868999999999999999999999868874519974553484135158999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 999999999999999998984----0880-58999999999999998304124799999999999999999-99889764
Q 000798 108 LSVILLDLTMVLGIAHGLNLL----MGVE-LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS-YVLGVLIS 181 (1279)
Q Consensus 108 LAIIasdIaEVIGtAIALnLL----FGIP-L~igVlITav~tllLL~lgsy~g~RKiE~l~~~LVgiM~Ls-FVi~liis 181 (1279)
+..++-..-+....+.+++.+ +|++ .++++++..+..+++.+++ +...++++++...++.++.+. ++..+...
T Consensus 112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~ 190 (501)
T 2jln_A 112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG-ITFIRWMNVFASPVLLAMGVYMVYLMLDGA 190 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999986186158999999999999999918-999999999999999999999999999846
Q ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCC--CHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 79812130421346687819999998-636511499998677553035665520--000034---699999999999999
Q 000798 182 QPEIPLSVNGMLTKFSGDSAFSIMSL-LGASMMPHNFYLHSSIVRRHQGQVNIS--KGALCH---DHFFAILCIFSGIYM 255 (1279)
Q Consensus 182 kPd~~evl~GLVP~lp~~sll~aVAL-IGATIMPhNlYLHSaLVqsR~~~~~~~--~~a~r~---D~~~sil~v~iGsfL 255 (1279)
+...+.+... .|....-+...++.+ +|..+ ++..+. +-+. |.-+++.. ++.... ..+.+. +.|.++
T Consensus 191 g~~~~~~~~~-~~~~~~~~f~~ai~~~~~~~~-~~~~~~-~Dys--Ry~~~~~~~~~~~~~~~~~~~~~g~---~lG~~i 262 (501)
T 2jln_A 191 DVSLGEVMSM-GGENPGMPFSTAIMIFVGGWI-AVVVSI-HDIV--KECKVDPNASREGQTKADARYATAQ---WLGMVP 262 (501)
T ss_dssp TCCHHHHTTC-CCSSCCSCHHHHHHHHHTTTH-HHHTTT-HHHH--TTBCCCTTCCHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCCCHHHHCC-CCCCCHHHHHHHHHHHHHHHH-HHHHCC-CCCC--CCCCCCCCCCCCCHHHCCCHHHHHH---HHHHHH
T ss_conf 8762024306-886424799999999999999-998526-7633--4178975421110221120389999---899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHH-HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999985302896446789899999996221059-99999-9999987687898-89779999975417986773
Q 000798 256 VNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVV-PFAFV-LVLFFSNQIIAVN-WNLSGQVVLQDFLRLDIPGW 332 (1279)
Q Consensus 256 INlaVIivaAavLygtGi~v~tl~dAa~lLepvlGg~~A-~iIFa-IGLLAAGqSSTIT-gTlAGq~VmeGFL~l~~~~w 332 (1279)
.+..+..+++..-.. ....+ ..+++...+.++.. ..+.. +.++.+..++.+. ..|+....++.++...++
T Consensus 263 ~~~~~~~lG~~~~~~--~~~~d---p~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~-- 335 (501)
T 2jln_A 263 ASIIFGFIGAASMVL--VGEWN---PVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFT-- 335 (501)
T ss_dssp HHHHHHHHHHHHHHH--HSCSC---HHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCC--
T ss_pred HHHHHHHHHHHHHHH--CCCCC---HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 999999999999874--02268---99999997134059999999999999999999771188899999994866666--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277899999999989999861852379999999999999888899999999
Q 000798 333 LHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 333 ~rrLitRiIAIIPALiVvl~~G~~glvqLLIisQVI~aIlLPFalIPLL~l 383 (1279)
++..+.++.++.. ++.. .+ ....+..|...+..++-|...|.+.-+
T Consensus 336 -~~~~~~i~~vi~~-~i~~-~~--~~~~f~~FL~~lg~~l~P~~gI~l~Dy 381 (501)
T 2jln_A 336 -FKTGVIVSAVVGL-LMMP-WQ--FAGVLNTFLNLLASALGPLAGIMISDY 381 (501)
T ss_dssp -HHHHHHHHHHHHH-HTCG-GG--THHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH-HHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -2589999999999-9999-98--687999999999999999999999999
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=76.47 Aligned_cols=346 Identities=12% Similarity=0.087 Sum_probs=152.0
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 766323654488988989968678999999999----9999999999888975098699999723284258899999999
Q 000798 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 108 (1279)
Q Consensus 33 VSiAyIDPGnIaS~lqAGA~FGYsLLWVLLLst----Ii~illQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeL 108 (1279)
+.+.++.+..+......+..+|+.-+|..+.+. ++++++-...-|. .-.++.|..++||++..+.+..+...+
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~---~~~T~~e~l~~Rfg~~~~~~~a~~~l~ 107 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFNKKLKTILAVFWIS 107 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHT---TCCSHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 99999879999877999998275999999999999999999999999986---991499999998496889999999999
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC-
Q ss_conf 99-9999999999999989840880589999999999999983041247999999999--9999999999889764798-
Q 000798 109 SV-ILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC--TAGIILLSYVLGVLISQPE- 184 (1279)
Q Consensus 109 AI-IasdIaEVIGtAIALnLLFGIPL~igVlITav~tllLL~lgsy~g~RKiE~l~~~--LVgiM~LsFVi~liiskPd- 184 (1279)
.. +......+.+.+..++.++|+|.++++++.++.+.+..+++..+..-..+.+..+ +++++.+.++....+..++
T Consensus 108 ~~~~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~ 187 (530)
T 3dh4_A 108 LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG 187 (530)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 99999999999999999999969988999999999999999713439999999999999999999999999998287056
Q ss_pred HHH-----------HCCCCCCCCCCCH--HHHHHHHHCCCCHHHHHHHH--HHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 121-----------3042134668781--99999986365114999986--77553035665520000034699999999
Q 000798 185 IPL-----------SVNGMLTKFSGDS--AFSIMSLLGASMMPHNFYLH--SSIVRRHQGQVNISKGALCHDHFFAILCI 249 (1279)
Q Consensus 185 ~~e-----------vl~GLVP~lp~~s--ll~aVALIGATIMPhNlYLH--SaLVqsR~~~~~~~~~a~r~D~~~sil~v 249 (1279)
..+ ..+-+.++-..+. ......++|........|+. -..+|.--..++ .+.+++-.+++....
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks--~k~ar~~~~~~~~~~ 265 (530)
T 3dh4_A 188 WFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS--VSEAQKGIVFAAFLK 265 (530)
T ss_dssp HHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC--HHHHHHHHHHHHHHH
T ss_conf 899999998507200361368898511036208899999999999897379999989997389--999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCC--------------CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999998530289--------------6446789899999996221059999999999987687898897
Q 000798 250 FSGIYMVNYVLMNSAANLFYSTG--------------LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 250 ~iGsfLINlaVIivaAavLygtG--------------i~v~tl~dAa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTl 315 (1279)
+...++ ..++-.++..+++.+ ..+.+..++.-.+.+.+. ++...++..++++|..|+.-....
T Consensus 266 ~~~~~~--~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~~lp-~~l~Gl~~a~llAA~mST~ss~l~ 342 (530)
T 3dh4_A 266 LIVPFL--VVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLP-VGVKGVVFAALAAAIVSSLASMLN 342 (530)
T ss_dssp HHGGGT--THHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHTTCC-TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999--99999999999816420000001001247788880159999999833-669999999999999999999999
Q ss_pred H-HHHHHHHHHCC--C--CCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC
Q ss_conf 7-99999754179--8--6773277899999999989999861-85237999999999999988889999-9999825
Q 000798 316 S-GQVVLQDFLRL--D--IPGWLHHATIRIISIVPALYCVWTS-GAEGVYQLLIFTQVMVAIMLPSSVIP-LFRVASS 386 (1279)
Q Consensus 316 A-Gq~VmeGFL~l--~--~~~w~rrLitRiIAIIPALiVvl~~-G~~glvqLLIisQVI~aIlLPFalIP-LL~ltNs 386 (1279)
+ +..+.+++.+. + .+......+.|...++-+++...+. -..+...+..+.+.+.++..|..+.+ ++-+..+
T Consensus 343 s~st~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wk 420 (530)
T 3dh4_A 343 STATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWK 420 (530)
T ss_dssp HHHHHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 868999968889752899778889999999999999999999999843579999999999998689999999999818
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=1.00 E-value=1 Score=68.76 Aligned_cols=119 Identities=8% Similarity=0.102 Sum_probs=74.7
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 663236544889889899686789999999---9-999999999998889750986999997232842588999999999
Q 000798 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLV---F-NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 109 (1279)
Q Consensus 34 SiAyIDPGnIaS~lqAGA~FGYsLLWVLLL---s-tIi~illQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeLA 109 (1279)
.+.+++...+......+..+|+..+|..+. . .++++++-..--|. .-.++.|..++||++..+.+..+...+.
T Consensus 61 ~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~---~~~T~~e~l~~Rfg~~~~~~~ai~~l~~ 137 (593)
T 2xq2_A 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEK---GIYTIPEFVEKRFNKKLKTILAVFWISL 137 (593)
T ss_dssp HGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHT---TCCSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9987258999637699997187999999999999999999999999857---9997279999882675079999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHH
Q ss_conf -9999999999999998984088058999999999999998304124
Q 000798 110 -VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 110 -IIasdIaEVIGtAIALnLLFGIPL~igVlITav~tllLL~lgsy~g 155 (1279)
++.....++.+.+..++.++|+|.+.++++.++.+.+..+++..+.
T Consensus 138 ~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~a 184 (593)
T 2xq2_A 138 YIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSA 184 (593)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 99999999999999999994085599999999999999987214379
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=57.13 Aligned_cols=42 Identities=5% Similarity=-0.120 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999622105999999999998768789889779999975
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 281 Aa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
..++++..+| ++...++.++++.+.+++..+..+++..++..
T Consensus 262 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~ 303 (445)
T 3l1l_A 262 FGDAARMALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKA 303 (445)
T ss_dssp HHHHHHHHHC-TTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999864-77999999999999999999999997999999
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=53.01 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=28.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996221059999999999987687898897799999
Q 000798 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 281 Aa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
..++..+.+| ++...++.++.+.+.+++..+..+++..++
T Consensus 260 ~~~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 260 LAVAAKPFLG-NLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999832-789999999999999999999999988999
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=51.42 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 236544889889899686789999999999-----9999999998--889750986999997232842588999999999
Q 000798 37 YVDPGKWAVIIEGGAHFGFDLVALMLVFNF-----AAIFCQYLSA--RIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 109 (1279)
Q Consensus 37 yIDPGnIaS~lqAGA~FGYsLLWVLLLstI-----i~illQ~LAA--RLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeLA 109 (1279)
-++...+... +..|..++...+++.+ .++.+-|++. ++- +| +...-.++-+|+.++++.+....+.
T Consensus 26 ~ig~~~~~~~----~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G-G~y~~~~~~~g~~~g~~~g~~~~~~ 98 (511)
T 4djk_A 26 VMAVYEYPTF----ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG-GVFAWVSNTLGPRWGFAAISFGYLQ 98 (511)
T ss_dssp GCCGGGHHHH----HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CC-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9843212777----862999999999999999999999999982646679--98-7310387655962899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998984
Q 000798 110 VILLDLTMVLGIAHGLNLL 128 (1279)
Q Consensus 110 IIasdIaEVIGtAIALnLL 128 (1279)
.+.....+..+.+..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ 117 (511)
T 4djk_A 99 IAIGFIPMLYFVLGALSYI 117 (511)
T ss_dssp HHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=1.00 E-value=1 Score=34.50 Aligned_cols=122 Identities=12% Similarity=0.083 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 105999999999998768789889779-9999754179867732778999999999899998618523799999999999
Q 000798 291 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 369 (1279)
Q Consensus 291 g~~A~iIFaIGLLAAGqSSTITgTlAG-q~VmeGFL~l~~~~w~rrLitRiIAIIPALiVvl~~G~~glvqLLIisQVI~ 369 (1279)
++.-..+|-+-++.||.+|.+...-.- ..+++.+ ++ ++++-.++..++..+..+.++. .+ .+ .++.+. ...
T Consensus 337 g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~~--~R~~~~~~v~~~~fllgl~~~~-~~-~g-~~~~D~--~~~ 408 (519)
T 2a65_A 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-KL--SRKHAVLWTAAIVFFSAHLVMF-LN-KS-LDEMDF--WAG 408 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-CC--CHHHHHHHHHHHHHHHHHHHHH-BT-TH-HHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHHHHHHHC-CC-CC-CCHHHH--HHH
T ss_conf 41369999999999999998778657689999751-87--4899999999999999999973-79-98-425799--986
Q ss_pred HHHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99888899999999----------82544446777538999-99999999999999999999
Q 000798 370 AIMLPSSVIPLFRV----------ASSRQIMGVHKISQYHE-FLVLITFMGMLGLKLIFMVE 420 (1279)
Q Consensus 370 aIlLPFalIPLL~l----------tNsr~IMG~yrNs~~~n-ILawli~liIi~LNI~fVv~ 420 (1279)
.+.+|+..+....+ ..+-+-|..++.+++++ .+.+++-++++++=+..++.
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~ 470 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWARE 470 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHH
T ss_conf 79999999999972100343357999987056776689998727745799999999999994
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=1.00 E-value=1 Score=26.63 Aligned_cols=50 Identities=12% Similarity=0.239 Sum_probs=23.8
Q ss_pred HHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 66323654488988989-----96867899999999999999999998889750-986
Q 000798 34 SIGYVDPGKWAVIIEGG-----AHFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GKD 85 (1279)
Q Consensus 34 SiAyIDPGnIaS~lqAG-----A~FGYsLLWVLLLstIi~illQ~LAARLGVVT-Gk~ 85 (1279)
..+.++|........+. .+||.-.+|...+..+.. +--...|+|-+. |++
T Consensus 35 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~f~--l~lafS~~G~IrLG~~ 90 (539)
T 4ain_A 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVFFI--VVIAASKFGTIRLGRI 90 (539)
T ss_dssp HHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHSGGGSCBSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHEECCCCCEECCCC
T ss_conf 9999878999999999999999887699999999999988--8760457775500899
No 9
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=1.00 E-value=1 Score=19.57 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=10.1
Q ss_pred CCCCCCCCEECC
Q ss_conf 776799840025
Q 000798 1227 VPHCGDGCIWKV 1238 (1279)
Q Consensus 1227 ~p~cg~~cvw~~ 1238 (1279)
+|.|||.|||-.
T Consensus 2 ~p~CGEsCv~~~ 13 (29)
T 2lam_A 2 LPTCGETCTLGT 13 (29)
T ss_dssp BCTTCCCCSSSC
T ss_pred CCCCCCCEEEEE
T ss_conf 887626556457
No 10
>2gj0_A Cycloviolacin O14; cyclotide, plant protein; NMR {Viola odorata}
Probab=1.00 E-value=1 Score=19.34 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=10.0
Q ss_pred CCCCCCCCCEECC
Q ss_conf 4776799840025
Q 000798 1226 SVPHCGDGCIWKV 1238 (1279)
Q Consensus 1226 ~~p~cg~~cvw~~ 1238 (1279)
++|.|||.|||-.
T Consensus 2 g~p~CGEsC~~~p 14 (31)
T 2gj0_A 2 SIPACGESCFKGK 14 (31)
T ss_dssp BHHHHCBCCSSSC
T ss_pred CCCCCCCCEEEEE
T ss_conf 8786647526355
Done!