Query 000799
Match_columns 1279
No_of_seqs 305 out of 1318
Neff 4.2
Searched_HMMs 46136
Date Mon Apr 1 23:49:21 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000799.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000799hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 2.2E-99 5E-104 858.8 20.4 458 14-485 19-498 (503)
2 PRK00701 manganese transport p 100.0 6.1E-76 1.3E-80 681.9 46.4 404 15-424 25-438 (439)
3 COG1914 MntH Mn2+ and Fe2+ tra 100.0 1.8E-72 3.9E-77 646.8 47.3 401 14-424 7-414 (416)
4 TIGR01197 nramp NRAMP (natural 100.0 8.5E-72 1.8E-76 638.9 41.2 365 21-390 1-390 (390)
5 PF01566 Nramp: Natural resist 100.0 7.7E-61 1.7E-65 540.3 35.7 350 43-397 1-358 (358)
6 TIGR00813 sss transporter, SSS 99.0 5E-07 1.1E-11 104.9 34.7 121 30-153 11-136 (407)
7 TIGR02119 panF sodium/pantothe 99.0 4.8E-06 1E-10 98.8 43.4 120 33-152 51-176 (471)
8 PRK15419 proline:sodium sympor 99.0 3.7E-06 8.1E-11 100.9 41.0 121 33-153 51-180 (502)
9 PF00474 SSF: Sodium:solute sy 99.0 1.6E-07 3.4E-12 108.6 26.7 119 33-151 17-138 (406)
10 PRK09442 panF sodium/panthothe 99.0 2.9E-05 6.2E-10 92.8 45.2 119 35-153 54-178 (483)
11 PRK12488 acetate permease; Pro 98.9 7.9E-06 1.7E-10 99.4 41.1 125 30-155 75-202 (549)
12 TIGR02121 Na_Pro_sym sodium/pr 98.9 4E-05 8.6E-10 91.8 44.6 120 34-153 48-176 (487)
13 TIGR02711 symport_actP cation/ 98.9 2.2E-05 4.7E-10 95.6 42.8 123 30-153 75-200 (549)
14 PRK09395 actP acetate permease 98.9 1E-05 2.3E-10 98.3 39.8 125 30-155 77-204 (551)
15 PF03222 Trp_Tyr_perm: Tryptop 98.9 1.3E-05 2.7E-10 94.1 38.1 341 25-385 4-361 (394)
16 PRK15132 tyrosine transporter 98.7 0.00012 2.6E-09 86.5 37.3 341 25-387 4-360 (403)
17 TIGR03648 Na_symport_lg probab 98.6 0.00045 9.8E-09 84.3 42.0 121 30-153 40-165 (552)
18 COG1457 CodB Purine-cytosine p 98.6 0.00016 3.4E-09 86.2 35.6 328 56-411 53-388 (442)
19 PRK10483 tryptophan permease; 98.6 7.5E-05 1.6E-09 88.5 32.5 337 23-387 10-371 (414)
20 COG0591 PutP Na+/proline sympo 98.6 0.00083 1.8E-08 81.2 41.4 137 27-163 40-185 (493)
21 PRK15049 L-asparagine permease 98.6 0.0028 6E-08 76.6 45.1 38 283-321 293-330 (499)
22 PRK10484 putative transporter; 98.5 0.0048 1E-07 75.0 45.5 109 32-140 48-164 (523)
23 PRK09664 tryptophan permease T 98.5 0.00031 6.8E-09 83.4 34.4 334 25-387 10-372 (415)
24 PRK13629 threonine/serine tran 98.5 0.00041 8.9E-09 82.9 35.2 150 31-186 26-187 (443)
25 PRK11017 codB cytosine permeas 98.5 0.0025 5.4E-08 75.2 40.3 107 56-164 43-150 (404)
26 PRK10249 phenylalanine transpo 98.4 0.0084 1.8E-07 71.5 42.6 102 27-136 31-138 (458)
27 TIGR00837 araaP aromatic amino 98.4 0.00083 1.8E-08 77.4 33.0 85 280-366 254-338 (381)
28 PRK11387 S-methylmethionine tr 98.4 0.017 3.6E-07 69.2 46.3 40 281-321 277-316 (471)
29 PF01235 Na_Ala_symp: Sodium:a 98.3 0.00051 1.1E-08 81.6 31.2 274 35-325 30-338 (416)
30 PRK10238 aromatic amino acid t 98.3 0.0029 6.3E-08 75.3 37.5 132 6-142 1-135 (456)
31 PRK11375 allantoin permease; P 98.3 0.0092 2E-07 72.3 40.8 48 55-102 60-107 (484)
32 TIGR00905 2A0302 transporter, 98.3 0.015 3.3E-07 69.4 41.8 37 283-320 272-308 (473)
33 TIGR00930 2a30 K-Cl cotranspor 98.3 0.0035 7.5E-08 81.5 38.7 30 294-323 386-415 (953)
34 TIGR00814 stp serine transport 98.3 0.00098 2.1E-08 78.7 30.8 48 58-105 33-87 (397)
35 PRK11049 D-alanine/D-serine/gl 98.2 0.03 6.4E-07 67.1 42.0 38 283-321 284-321 (469)
36 COG3949 Uncharacterized membra 98.2 0.0028 6.1E-08 73.1 31.1 136 19-162 5-141 (349)
37 COG4147 DhlC Predicted symport 98.2 0.0021 4.6E-08 76.9 30.5 227 74-316 94-366 (529)
38 TIGR00910 2A0307_GadC glutamat 98.1 0.02 4.3E-07 69.6 39.4 50 51-101 29-83 (507)
39 PRK10580 proY putative proline 98.1 0.044 9.4E-07 65.3 43.7 68 27-102 19-91 (457)
40 TIGR01773 GABAperm gamma-amino 98.1 0.043 9.3E-07 65.1 43.0 72 27-102 22-94 (452)
41 TIGR00796 livcs branched-chain 98.1 0.012 2.5E-07 69.6 35.3 71 33-104 4-74 (378)
42 TIGR00908 2A0305 ethanolamine 98.1 0.047 1E-06 64.5 42.6 38 63-102 52-89 (442)
43 TIGR02358 thia_cytX probable h 98.1 0.049 1.1E-06 64.2 40.4 58 55-112 29-86 (386)
44 PRK10746 putative transport pr 98.1 0.049 1.1E-06 65.3 40.5 38 283-321 273-310 (461)
45 TIGR00800 ncs1 NCS1 nucleoside 98.0 0.0071 1.5E-07 72.0 32.4 74 38-112 28-104 (442)
46 COG0814 SdaC Amino acid permea 98.0 0.032 6.9E-07 66.5 36.6 156 26-186 11-177 (415)
47 PRK11021 putative transporter; 98.0 0.072 1.6E-06 62.5 40.3 37 282-319 249-285 (410)
48 PF05525 Branch_AA_trans: Bran 97.9 0.042 9E-07 66.0 36.0 338 30-388 9-360 (427)
49 TIGR00909 2A0306 amino acid tr 97.9 0.07 1.5E-06 62.5 37.2 40 283-323 268-307 (429)
50 COG0733 Na+-dependent transpor 97.9 0.014 3.1E-07 69.8 31.4 72 30-104 13-92 (439)
51 TIGR00907 2A0304 amino acid pe 97.9 0.03 6.6E-07 66.9 34.6 37 282-318 292-328 (482)
52 TIGR00835 agcS amino acid carr 97.9 0.021 4.5E-07 68.5 32.7 44 283-327 324-367 (425)
53 TIGR00913 2A0310 amino acid pe 97.9 0.13 2.8E-06 61.5 44.1 34 288-321 283-316 (478)
54 PRK10644 arginine:agmatin anti 97.8 0.14 3E-06 60.9 40.2 38 62-101 51-88 (445)
55 PF02133 Transp_cyt_pur: Perme 97.8 0.002 4.3E-08 75.9 22.2 77 35-112 20-99 (440)
56 TIGR00911 2A0308 L-type amino 97.8 0.21 4.5E-06 60.4 39.0 36 64-101 90-125 (501)
57 TIGR03810 arg_ornith_anti argi 97.8 0.2 4.3E-06 60.0 43.3 39 281-320 266-304 (468)
58 TIGR03813 put_Glu_GABA_T putat 97.7 0.21 4.5E-06 59.9 41.3 69 27-101 6-79 (474)
59 COG4145 PanF Na+/panthothenate 97.7 0.15 3.3E-06 60.2 34.5 122 30-153 47-176 (473)
60 PRK15433 branched-chain amino 97.6 0.26 5.6E-06 59.7 35.9 80 29-109 13-92 (439)
61 COG1115 AlsT Na+/alanine sympo 97.5 0.16 3.4E-06 61.3 32.1 275 32-326 70-383 (452)
62 COG1113 AnsP Gamma-aminobutyra 97.5 0.082 1.8E-06 63.7 29.5 111 52-164 43-157 (462)
63 PRK10197 gamma-aminobutyrate t 97.5 0.42 9.1E-06 57.1 42.5 33 289-321 260-292 (446)
64 PRK11357 frlA putative fructos 97.4 0.51 1.1E-05 56.1 38.1 38 62-101 54-91 (445)
65 PF13520 AA_permease_2: Amino 97.3 0.54 1.2E-05 55.0 38.6 42 282-323 260-301 (426)
66 PRK10655 potE putrescine trans 97.1 0.93 2E-05 53.7 42.9 34 66-101 53-86 (438)
67 PRK10836 lysine transporter; P 97.1 1.2 2.7E-05 53.8 40.2 37 284-321 287-323 (489)
68 COG1114 BrnQ Branched-chain am 97.0 1.4 2.9E-05 53.2 34.0 76 29-105 10-85 (431)
69 KOG1289 Amino acid transporter 97.0 0.19 4.2E-06 61.7 25.2 30 389-418 447-476 (550)
70 TIGR00906 2A0303 cationic amin 96.9 2.1 4.5E-05 53.2 41.3 37 284-321 304-340 (557)
71 TIGR00912 2A0309 spore germina 96.6 2 4.3E-05 49.6 34.6 42 61-102 40-82 (359)
72 COG0531 PotE Amino acid transp 96.6 2.3 4.9E-05 50.0 40.1 34 284-318 277-310 (466)
73 PF00209 SNF: Sodium:neurotran 96.6 0.53 1.1E-05 57.7 25.2 59 37-95 18-78 (523)
74 PLN03074 auxin influx permease 96.6 2.4 5.3E-05 51.8 30.5 62 320-383 336-398 (473)
75 PRK10435 cadB lysine/cadaverin 96.2 4.1 8.9E-05 48.6 43.8 69 27-101 15-84 (435)
76 PRK15015 carbon starvation pro 96.1 6.4 0.00014 50.1 33.8 51 50-101 108-162 (701)
77 PRK09928 choline transport pro 96.0 5.2 0.00011 51.1 29.8 86 292-385 406-497 (679)
78 COG1953 FUI1 Cytosine/uracil/t 96.0 6.3 0.00014 48.7 29.7 64 57-120 76-140 (497)
79 PF00324 AA_permease: Amino ac 95.9 0.093 2E-06 62.8 14.0 29 289-317 283-311 (478)
80 TIGR03428 ureacarb_perm permea 95.9 6.2 0.00013 47.7 40.8 43 57-101 53-95 (475)
81 PRK15238 inner membrane transp 95.7 7.3 0.00016 47.4 40.2 72 26-101 11-87 (496)
82 KOG1286 Amino acid transporter 95.7 0.66 1.4E-05 57.8 20.1 41 284-324 307-350 (554)
83 KOG1303 Amino acid transporter 95.3 9.9 0.00022 46.4 30.9 64 320-385 330-398 (437)
84 COG0833 LysP Amino acid transp 95.3 11 0.00025 47.0 28.0 273 27-324 60-355 (541)
85 PF02554 CstA: Carbon starvati 95.1 1 2.2E-05 53.6 18.0 59 43-103 71-133 (376)
86 PF03845 Spore_permease: Spore 94.9 9.2 0.0002 43.8 31.8 93 61-161 38-137 (320)
87 PF02028 BCCT: BCCT family tra 94.4 18 0.00039 44.9 29.8 87 292-385 389-477 (485)
88 COG1966 CstA Carbon starvation 94.2 21 0.00045 44.8 32.3 53 48-101 75-131 (575)
89 KOG1288 Amino acid transporter 93.3 4 8.6E-05 51.9 18.5 44 278-324 358-401 (945)
90 PTZ00206 amino acid transporte 93.3 26 0.00056 42.9 31.6 42 74-115 110-152 (467)
91 KOG2349 Na+:iodide/myo-inosito 93.2 1.3 2.9E-05 55.3 14.6 113 35-151 58-175 (585)
92 PRK03356 L-carnitine/gamma-but 92.7 33 0.00071 42.9 25.3 87 292-385 402-493 (504)
93 KOG3660 Sodium-neurotransmitte 91.5 52 0.0011 42.3 26.5 65 28-95 41-111 (629)
94 COG1292 BetT Choline-glycine b 89.3 71 0.0015 40.3 29.4 71 307-385 416-490 (537)
95 TIGR00844 c_cpa1 na(+)/h(+) an 87.4 1.1E+02 0.0025 40.4 27.1 22 204-225 132-153 (810)
96 PRK13108 prolipoprotein diacyl 84.6 68 0.0015 39.8 19.7 18 409-426 230-247 (460)
97 TIGR00842 bcct choline/carniti 84.2 1.2E+02 0.0026 37.7 28.3 88 292-385 353-445 (453)
98 COG3949 Uncharacterized membra 82.3 18 0.00038 43.1 12.9 88 284-386 71-159 (349)
99 PLN00151 potassium transporter 81.3 67 0.0015 42.4 18.5 34 293-326 417-454 (852)
100 PLN00150 potassium ion transpo 81.3 1.6E+02 0.0035 38.9 21.7 33 294-326 358-394 (779)
101 KOG1304 Amino acid transporter 81.0 1.6E+02 0.0034 36.8 30.1 71 336-408 364-435 (449)
102 PF01490 Aa_trans: Transmembra 79.4 0.076 1.6E-06 61.2 -7.3 51 335-387 323-373 (409)
103 PF12794 MscS_TM: Mechanosensi 77.1 48 0.001 39.2 14.6 17 338-354 131-147 (340)
104 PRK09950 putative transporter; 76.3 2.2E+02 0.0048 35.9 34.5 88 292-385 399-491 (506)
105 COG1283 NptA Na+/phosphate sym 76.1 2.3E+02 0.005 36.0 23.0 41 285-325 167-207 (533)
106 KOG1305 Amino acid transporter 76.0 2E+02 0.0043 35.3 28.3 63 26-98 19-81 (411)
107 COG4232 Thiol:disulfide interc 75.8 2.4E+02 0.0052 36.1 20.7 17 297-313 293-309 (569)
108 KOG3659 Sodium-neurotransmitte 75.6 2.4E+02 0.0053 36.3 20.3 147 253-402 374-542 (629)
109 PLN00148 potassium transporter 75.4 2.9E+02 0.0062 36.8 22.3 33 294-326 341-377 (785)
110 PRK00293 dipZ thiol:disulfide 72.9 2.7E+02 0.0059 35.4 20.9 58 359-422 326-383 (571)
111 TIGR00794 kup potassium uptake 71.7 2.7E+02 0.0058 36.5 19.9 28 137-165 169-196 (688)
112 PLN00149 potassium transporter 69.0 3.9E+02 0.0084 35.6 20.6 33 294-326 345-381 (779)
113 KOG2348 Urea transporter [Amin 67.1 17 0.00037 44.7 7.9 102 38-139 67-171 (667)
114 TIGR02865 spore_II_E stage II 66.5 3.5E+02 0.0076 35.8 20.0 19 365-384 267-285 (764)
115 PF02705 K_trans: K+ potassium 64.0 4.1E+02 0.0088 34.0 25.0 104 57-165 43-160 (534)
116 PF05977 MFS_3: Transmembrane 63.9 3.8E+02 0.0083 33.7 35.1 39 100-139 13-51 (524)
117 PF05313 Pox_P21: Poxvirus P21 62.6 60 0.0013 35.8 10.1 27 357-385 79-105 (189)
118 PRK09824 PTS system beta-gluco 61.5 2.2E+02 0.0049 36.8 16.5 93 128-223 205-311 (627)
119 PRK03612 spermidine synthase; 57.6 2.9E+02 0.0064 34.7 16.5 47 47-93 25-72 (521)
120 COG1294 AppB Cytochrome bd-typ 56.4 4.4E+02 0.0095 31.9 24.3 24 444-467 316-339 (346)
121 PRK11469 hypothetical protein; 55.1 2.5E+02 0.0054 30.9 13.6 29 128-156 128-156 (188)
122 PRK10745 trkD potassium transp 55.0 6E+02 0.013 33.1 18.5 19 57-75 56-74 (622)
123 PF06738 DUF1212: Protein of u 54.2 81 0.0018 33.7 9.6 9 124-132 116-124 (193)
124 PTZ00243 ABC transporter; Prov 52.4 9.4E+02 0.02 34.6 25.4 21 73-93 307-327 (1560)
125 TIGR02840 spore_YtaF putative 51.2 2E+02 0.0044 31.9 12.3 28 129-156 152-179 (206)
126 PRK02983 lysS lysyl-tRNA synth 50.0 3E+02 0.0065 37.9 15.8 51 368-419 114-164 (1094)
127 TIGR02916 PEP_his_kin putative 49.6 6.8E+02 0.015 32.1 19.6 18 201-218 193-210 (679)
128 PF01528 Herpes_glycop: Herpes 48.7 5.8E+02 0.013 31.3 16.3 31 364-394 238-268 (374)
129 PRK10263 DNA translocase FtsK; 47.5 57 0.0012 45.0 8.5 10 128-137 78-87 (1355)
130 TIGR01995 PTS-II-ABC-beta PTS 44.3 8.3E+02 0.018 31.6 19.4 10 202-211 281-290 (610)
131 PF02990 EMP70: Endomembrane p 43.5 2.3E+02 0.0051 35.5 12.6 13 472-484 482-494 (521)
132 COG0659 SUL1 Sulfate permease 42.7 8.4E+02 0.018 31.2 27.9 90 22-123 53-155 (554)
133 COG1283 NptA Na+/phosphate sym 42.0 3.8E+02 0.0082 34.3 13.8 44 284-327 39-82 (533)
134 PF05525 Branch_AA_trans: Bran 41.9 7.5E+02 0.016 30.8 16.1 62 86-147 263-325 (427)
135 PRK15433 branched-chain amino 41.2 4.3E+02 0.0093 33.0 13.9 62 86-147 267-328 (439)
136 COG0814 SdaC Amino acid permea 39.3 7.6E+02 0.016 30.2 15.6 32 280-312 73-104 (415)
137 PRK11598 putative metal depend 37.9 4.1E+02 0.009 33.8 13.5 21 295-315 75-95 (545)
138 TIGR03732 lanti_perm_MutE lant 37.9 4E+02 0.0087 30.0 12.2 59 336-394 14-73 (241)
139 PF06570 DUF1129: Protein of u 37.8 5.9E+02 0.013 28.0 13.4 29 393-422 142-170 (206)
140 TIGR00844 c_cpa1 na(+)/h(+) an 37.6 1.2E+03 0.026 31.5 18.4 26 54-79 205-230 (810)
141 COG2966 Uncharacterized conser 37.2 2.1E+02 0.0046 32.9 10.0 32 123-155 137-168 (250)
142 COG2194 Predicted membrane-ass 36.5 5.8E+02 0.012 32.8 14.4 15 22-36 12-26 (555)
143 PF14362 DUF4407: Domain of un 36.5 1.6E+02 0.0035 33.9 9.1 29 120-148 32-60 (301)
144 COG3696 Putative silver efflux 36.3 7.2E+02 0.016 33.9 15.3 74 133-220 340-415 (1027)
145 PRK13743 conjugal transfer pro 36.0 2.6E+02 0.0057 29.6 9.3 39 275-315 75-113 (141)
146 PF02322 Cyto_ox_2: Cytochrome 35.7 5.2E+02 0.011 30.8 13.2 26 68-93 169-194 (328)
147 TIGR00930 2a30 K-Cl cotranspor 35.7 1.3E+03 0.029 31.5 20.6 15 447-461 321-335 (953)
148 PF07907 YibE_F: YibE/F-like p 35.0 7.5E+02 0.016 28.4 21.7 24 129-152 46-70 (244)
149 PF05297 Herpes_LMP1: Herpesvi 34.9 13 0.00028 43.2 0.0 48 140-187 118-165 (381)
150 PRK03557 zinc transporter ZitB 34.4 8.2E+02 0.018 28.7 15.7 166 91-269 14-199 (312)
151 TIGR00813 sss transporter, SSS 34.1 5.5E+02 0.012 30.7 13.2 48 281-328 68-115 (407)
152 TIGR02119 panF sodium/pantothe 33.8 8.7E+02 0.019 29.7 15.1 48 281-328 109-156 (471)
153 COG1230 CzcD Co/Zn/Cd efflux s 33.7 6.7E+02 0.014 29.9 13.4 55 154-213 84-138 (296)
154 PF03784 Cyclotide: Cyclotide 33.5 7.7 0.00017 31.2 -1.4 11 1227-1238 2-12 (30)
155 PRK09509 fieF ferrous iron eff 33.2 6.6E+02 0.014 29.1 13.3 54 370-423 49-103 (299)
156 COG3610 Uncharacterized conser 33.2 2.5E+02 0.0054 30.3 9.1 80 122-204 17-102 (156)
157 PRK11281 hypothetical protein; 32.9 1.6E+03 0.034 31.5 19.2 188 242-464 542-732 (1113)
158 KOG2234 Predicted UDP-galactos 32.9 6E+02 0.013 30.9 12.9 72 301-377 187-271 (345)
159 KOG1397 Ca2+/H+ antiporter VCX 32.7 4.3E+02 0.0093 32.7 11.7 54 49-106 95-148 (441)
160 COG4858 Uncharacterized membra 32.5 7.8E+02 0.017 27.9 13.4 83 367-462 131-213 (226)
161 TIGR00832 acr3 arsenical-resis 32.0 9.3E+02 0.02 28.6 15.5 26 362-387 175-200 (328)
162 PRK10929 putative mechanosensi 32.0 1.6E+03 0.035 31.4 18.8 13 341-353 607-619 (1109)
163 PF02535 Zip: ZIP Zinc transpo 30.8 7.8E+02 0.017 28.0 13.3 31 45-75 187-217 (317)
164 PF10810 DUF2545: Protein of u 30.5 2.6E+02 0.0056 26.9 7.5 30 101-130 3-34 (80)
165 TIGR00927 2A1904 K+-dependent 30.0 1.5E+02 0.0032 40.0 8.0 12 452-463 1073-1084(1096)
166 TIGR02711 symport_actP cation/ 29.1 1.3E+03 0.028 29.3 22.0 99 264-377 120-218 (549)
167 PRK09543 znuB high-affinity zi 29.1 9.2E+02 0.02 27.6 15.1 46 118-166 43-89 (261)
168 PRK12488 acetate permease; Pro 28.1 1.3E+03 0.029 29.1 16.4 48 281-328 132-179 (549)
169 KOG1287 Amino acid transporter 28.1 1.3E+03 0.029 29.2 16.2 203 248-459 46-257 (479)
170 TIGR00906 2A0303 cationic amin 28.0 1.3E+03 0.029 29.2 19.8 8 450-457 275-282 (557)
171 PRK11026 ftsX cell division AB 28.0 1.1E+03 0.023 28.0 14.7 54 42-96 166-220 (309)
172 COG1457 CodB Purine-cytosine p 27.8 1.3E+03 0.028 29.0 16.1 78 56-134 227-307 (442)
173 TIGR00783 ccs citrate carrier 27.6 1.1E+03 0.024 28.8 14.0 150 53-214 118-283 (347)
174 PRK10263 DNA translocase FtsK; 27.5 8E+02 0.017 34.8 14.1 13 49-61 67-79 (1355)
175 PF11168 DUF2955: Protein of u 27.0 1.8E+02 0.0038 30.4 6.7 89 125-216 15-111 (140)
176 PRK09598 lipid A phosphoethano 26.8 6.2E+02 0.013 32.1 12.4 128 252-400 45-184 (522)
177 PRK11375 allantoin permease; P 26.5 9.1E+02 0.02 30.1 13.7 42 103-144 314-358 (484)
178 PRK09917 hypothetical protein; 25.9 5.9E+02 0.013 27.4 10.4 80 121-203 20-104 (157)
179 TIGR03648 Na_symport_lg probab 25.6 1.4E+03 0.031 28.7 15.7 49 280-328 96-144 (552)
180 COG2271 UhpC Sugar phosphate p 25.3 7.8E+02 0.017 31.0 12.4 24 53-81 249-272 (448)
181 KOG1134 Uncharacterized conser 24.9 1.8E+03 0.038 29.5 17.9 13 367-379 570-582 (728)
182 PF06609 TRI12: Fungal trichot 24.7 1.6E+03 0.036 29.1 19.4 207 242-460 41-290 (599)
183 PF03222 Trp_Tyr_perm: Tryptop 24.2 1.3E+03 0.029 27.9 19.5 42 284-326 70-111 (394)
184 PRK11463 fxsA phage T7 F exclu 24.2 6.3E+02 0.014 27.0 10.2 49 42-92 15-63 (148)
185 PF02322 Cyto_ox_2: Cytochrome 24.0 1.3E+03 0.028 27.6 23.2 17 252-268 121-137 (328)
186 KOG1304 Amino acid transporter 23.6 7.9E+02 0.017 30.9 12.2 35 449-484 288-322 (449)
187 PF11833 DUF3353: Protein of u 23.4 4.5E+02 0.0097 29.3 9.2 41 371-418 119-159 (194)
188 PF06011 TRP: Transient recept 23.4 1.4E+03 0.031 27.9 22.4 28 441-468 386-413 (438)
189 TIGR02854 spore_II_GA sigma-E 23.2 7.7E+02 0.017 28.8 11.6 12 67-78 15-26 (288)
190 COG1271 CydA Cytochrome bd-typ 23.0 1.6E+03 0.035 28.4 32.5 33 240-272 124-156 (457)
191 COG5594 Uncharacterized integr 23.0 2E+03 0.043 29.5 17.8 32 383-414 652-683 (827)
192 KOG1278 Endosomal membrane pro 22.9 1.8E+03 0.039 28.9 16.6 20 403-422 492-511 (628)
193 TIGR00796 livcs branched-chain 22.9 1.4E+03 0.031 27.8 17.9 63 86-148 257-320 (378)
194 PF06123 CreD: Inner membrane 22.4 6.2E+02 0.013 31.5 11.0 103 99-208 301-419 (430)
195 KOG1278 Endosomal membrane pro 22.3 1.8E+03 0.04 28.8 17.2 152 22-215 340-497 (628)
196 PRK10213 nepI ribonucleoside t 22.2 1.3E+03 0.029 27.1 35.7 23 3-25 2-24 (394)
197 PF12821 DUF3815: Protein of u 22.2 4.2E+02 0.0091 27.1 8.2 79 121-202 9-92 (130)
198 PF14898 DUF4491: Domain of un 21.8 3.3E+02 0.0072 27.4 6.9 35 163-197 57-91 (94)
199 PF01741 MscL: Large-conductan 21.7 1.2E+02 0.0027 31.6 4.3 54 442-501 70-123 (128)
200 PRK12438 hypothetical protein; 21.7 6.3E+02 0.014 34.7 11.5 111 57-180 175-304 (991)
201 PRK09928 choline transport pro 21.6 2E+03 0.043 28.9 23.6 21 687-707 645-666 (679)
202 PF13722 DUF4161: C-terminal d 21.2 9.6E+02 0.021 25.1 10.6 29 298-326 11-39 (127)
203 TIGR00837 araaP aromatic amino 21.1 1.4E+03 0.03 26.9 17.7 31 281-312 61-91 (381)
204 PHA03242 envelope glycoprotein 21.1 6.7E+02 0.015 31.3 10.8 51 364-414 252-302 (428)
205 COG3158 Kup K+ transporter [In 20.9 2E+03 0.043 28.6 16.0 43 57-102 62-108 (627)
206 PRK10692 hypothetical protein; 20.9 4E+02 0.0087 26.6 7.2 59 396-468 7-65 (92)
207 PRK12363 phosphoglycerol trans 20.7 4.3E+02 0.0094 34.8 9.7 45 371-425 5-49 (703)
208 PF04142 Nuc_sug_transp: Nucle 20.7 1.2E+03 0.026 26.5 12.2 21 356-376 181-201 (244)
209 PF10136 SpecificRecomb: Site- 20.7 2E+03 0.044 28.7 21.3 31 187-217 356-389 (643)
210 COG1668 NatB ABC-type Na+ effl 20.6 1.6E+03 0.035 27.5 14.4 35 55-89 187-221 (407)
211 KOG0569 Permease of the major 20.6 1.8E+03 0.039 28.0 15.8 29 357-385 114-142 (485)
212 COG1296 AzlC Predicted branche 20.5 1.3E+03 0.029 26.5 13.1 28 51-78 38-66 (238)
213 TIGR01297 CDF cation diffusion 20.5 6.1E+02 0.013 28.3 9.8 31 393-423 52-82 (268)
214 PF10762 DUF2583: Protein of u 20.3 3.8E+02 0.0083 26.6 6.9 58 397-468 8-65 (89)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-99 Score=858.78 Aligned_cols=458 Identities=30% Similarity=0.447 Sum_probs=411.9
Q ss_pred CCCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000799 14 NYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 14 ~~~~~~~rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~ 93 (1279)
..++..|||+|+|+|||||||+||+||||++|++||||+|||+|||++++++++++++|+++||+|+||||||||+||++
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 35677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000799 94 YDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 94 Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~La 173 (1279)
||||+++.||+++|+|+|++|++||||+|+|+|+|+++|+|+||+||++|+|+++++.+| |.||+|.++++++..|++|
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVliTilD~f~fL~l~ky-GiRklE~~~~~Li~~mai~ 177 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLITILDTFLFLFLDKY-GIRKLEAFFAFLIVTMAIS 177 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999876 9999999999999999999
Q ss_pred HHHHHHhhCCChhhhc-cccccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchh---hhhHHHHHH
Q 000799 174 YVLGVLISQPEIPLSV-NGMLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGA---LCHDHFFAI 246 (1279)
Q Consensus 174 FVi~l~is~Pd~~eV~-~GLVP~lp---~~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~~a---~r~D~~~gi 246 (1279)
|.+++..++|+.++++ +|++|+++ ++.+++++|++||+|||||+|+||++||+|+.+++.+++. .++....+
T Consensus 178 F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies- 256 (503)
T KOG1291|consen 178 FGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES- 256 (503)
T ss_pred HheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH-
Confidence 9999999999998765 66789987 6789999999999999999999999999999887543322 11111112
Q ss_pred HHHHHHHHHHHHHHHHHH-HHhhccCC-cccc-------------CHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHH
Q 000799 247 LCIFSGIYMVNYVLMNSA-ANLFYSTG-LVLL-------------TFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAV 311 (1279)
Q Consensus 247 l~il~gsfLINlaImiva-AavfygtG-~~V~-------------tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTI 311 (1279)
.+.+.++|.||.+++.++ |+.||++- ..+. +...+..+|...+| +++.++|++|||+|||||+|
T Consensus 257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g-~~a~~Ifai~lLasGQSsti 335 (503)
T KOG1291|consen 257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFG-PAALYIFAIGLLASGQSSTI 335 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhc-cHHHHHHHHHHHHCCCcccc
Confidence 123456899999999999 98888753 2222 24445667888787 99999999999999999999
Q ss_pred HHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 000799 312 NWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMG 391 (1279)
Q Consensus 312 TgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMG 391 (1279)
||||+||+|||||++|++++|.||++||.+||+|+++|+++.|.+++.+|++++||+++++|||+++|++.|+++|+|||
T Consensus 336 tgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r~IM~ 415 (503)
T KOG1291|consen 336 TGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGEDGLSGLNDFLNVLQSLQLPFAVIPLLTFTSSRKIMG 415 (503)
T ss_pred eeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcccHHHHHHHHHHHHHHhhhHHHhhHHhhhccHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 000799 392 VHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRSASS 471 (1279)
Q Consensus 392 e~rnS~~lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s~s~ 471 (1279)
.|+|+...+.++|.+.++++.+|+|++++++.. + ....+..+.++.+.+++|++|++||+.+|++....
T Consensus 416 ~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~-------~----~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~~~~ 484 (503)
T KOG1291|consen 416 VFKNGLVTEELTWTVAALVLGINGYFLVSFFWS-------L----VGKHSKIVVTVNVWTLAYLAFILYLAATCLNAYSI 484 (503)
T ss_pred hhccCccceeeeehheeeeeeeeeEEeeeehhh-------h----cCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999866531 1 12122445566778899999999999999999999
Q ss_pred cCCCCCCccccccc
Q 000799 472 RNNAPDWSWEFQRA 485 (1279)
Q Consensus 472 ~~~~~~~~~~~~~~ 485 (1279)
..+++.|+++.++.
T Consensus 485 ~~~~~~~~~~~~~~ 498 (503)
T KOG1291|consen 485 ISLAMSSSMHAQNA 498 (503)
T ss_pred hhhhcccchhcccc
Confidence 99999999999885
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=6.1e-76 Score=681.86 Aligned_cols=404 Identities=28% Similarity=0.490 Sum_probs=369.4
Q ss_pred CCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhc
Q 000799 15 YQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEY 94 (1279)
Q Consensus 15 ~~~~~~rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Y 94 (1279)
..+..++++++++|||++++++|+|||+++|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|
T Consensus 25 ~~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~ 104 (439)
T PRK00701 25 SGRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRY 104 (439)
T ss_pred CcchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHC
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 000799 95 DKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 174 (1279)
Q Consensus 95 gk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaF 174 (1279)
||++++++|+.+++++++++++|++|+|+|++++||+|++++++++++++++++++. ..++|++|+++.+++++|.+||
T Consensus 105 ~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~-~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 105 PRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQ-RRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999888776543 3467999999998999999999
Q ss_pred HHHHHhhCCChhhhccccccc---cCC-ChHHHHHHHhcccchhHHHHHhHHhhhhcccccc-----ccchhhhhHHHHH
Q 000799 175 VLGVLISQPEIPLSVNGMLTK---FSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVN-----ISKGALCHDHFFA 245 (1279)
Q Consensus 175 Vi~l~is~Pd~~eV~~GLVP~---lp~-~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d-----~~~~a~r~D~~~g 245 (1279)
+++++.++|||+++++|++|+ +|. +.++.++|++||||||||+|+||+++++|+.+.+ ...+..+.|+.++
T Consensus 184 ~~~~~~~~P~~~~v~~Gl~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~~~~~~~~~~l~~~r~Dt~~g 263 (439)
T PRK00701 184 IVELFLAQPDWAAVLKGFIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVGRTGEEKREALRFTRIDSAIA 263 (439)
T ss_pred HHHHheeCCCHHHHhcccCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhccccCChHhHHHHHHHHHHHHHHH
Confidence 999999999999999999999 874 5678899999999999999999999988753311 1122345677666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCcc-ccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000799 246 ILCIFSGIYMVNYVLMNSAANLFYSTGLV-LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 246 il~il~gsfLINlaImivaAavfygtG~~-V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
+ .+++++|.+|++++|++||++|.. +.+..|++++|+|.+| ++++++|++|||+||++|++++++++++++++|
T Consensus 264 ~----~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G-~~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~ 338 (439)
T PRK00701 264 L----TIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLG-AAAATLFGIALLASGLSSTVVGTLAGQIVMEGF 338 (439)
T ss_pred H----HHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHh-HHHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 4 346899999999999999998875 8899999999999998 899999999999999999999999999999999
Q ss_pred hCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHH
Q 000799 325 LRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVL 404 (1279)
Q Consensus 325 L~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILaw 404 (1279)
++|+.++|.|++++++++++|+++++++.+..+|+++++++||+++++|||+++|+++++|+|++||+|||+++.|+++|
T Consensus 339 l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~~~~ 418 (439)
T PRK00701 339 LRLRIPLWVRRLITRGLAMVPALIVILLGGELDPTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKIIAW 418 (439)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHHHHH
Confidence 99998899999999999999999877654334699999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 000799 405 ITFMGMLGLKLIFMVEMIFG 424 (1279)
Q Consensus 405 li~llIi~LNIyfVi~~lfg 424 (1279)
+++++++++|+++++..++|
T Consensus 419 ~~~~~i~~l~~~~~~~~~~~ 438 (439)
T PRK00701 419 IIAVLIVALNIYLLYQTFTG 438 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999988764
No 3
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-72 Score=646.84 Aligned_cols=401 Identities=28% Similarity=0.433 Sum_probs=367.8
Q ss_pred CCCchhHHHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000799 14 NYQSGVLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 14 ~~~~~~~rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~ 93 (1279)
+.....++++++++||||||++||+|||||+|++|+|++|||+|+|++++++++++++|++++|+|+||||+|+|.||++
T Consensus 7 ~~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~ 86 (416)
T COG1914 7 KKKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRER 86 (416)
T ss_pred cchHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 34467789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Q 000799 94 YDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLS 173 (1279)
Q Consensus 94 Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~La 173 (1279)
|++++++++|+.++++++++|++|++|+|+|++++||+|+.++++++++++++++++. ++|++|++...++.++.+|
T Consensus 87 y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~---~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLK---GYRLLERVVLILGLVLVIL 163 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887753 6799999999999999999
Q ss_pred HHHHHHhhCCChhhhccc-cccccCC-ChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhh---hhHHHHHHHH
Q 000799 174 YVLGVLISQPEIPLSVNG-MLTKFSG-DSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGAL---CHDHFFAILC 248 (1279)
Q Consensus 174 FVi~l~is~Pd~~eV~~G-LVP~lp~-~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~~a~---r~D~~~gil~ 248 (1279)
|++++++.+|+|++++++ ++|+.|. +.++.++|++|||||||++|+||++|+++...++..+++. +.|.++++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~~~~~~~~~~~~~~~d~~i~~-- 241 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGIKGEENLRALRYSRIDTIIGM-- 241 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccccchhHHHHHHHHHHHHHHHH--
Confidence 999999999999999988 7798877 7899999999999999999999999997332222222333 34555543
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCc--cccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000799 249 IFSGIYMVNYVLMNSAANLFYSTGL--VLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 249 il~gsfLINlaImivaAavfygtG~--~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
+..+++|+++++++|..+|.++. .+.+..++...+.+.+| ..+..+|++++++||++|++++++++|.+|++|++
T Consensus 242 --~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G-~~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~~ 318 (416)
T COG1914 242 --IIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLG-SAAFVLFGVALLAAGLSSTVVATYAGQIVMEGFLN 318 (416)
T ss_pred --HHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhh-hHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhhc
Confidence 35689999999999999998774 46678888999999998 89999999999999999999999999999999999
Q ss_pred CCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHH
Q 000799 327 LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLIT 406 (1279)
Q Consensus 327 l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli 406 (1279)
++.++|.|++++++++++|++++.+++| ++.++++++|+++++++||+++|++.++++|++||+|+|++|.++++|++
T Consensus 319 ~~~~~~~r~~i~~~~~~ip~~~i~i~~g--~~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~~~v 396 (416)
T COG1914 319 WRIPLWRRRLITRTFAIVPGLAIIILFG--DPARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLGWIV 396 (416)
T ss_pred ccCchHhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHHHHH
Confidence 9999999999999999999988888888 59999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 000799 407 FMGMLGLKLIFMVEMIFG 424 (1279)
Q Consensus 407 ~llIi~LNIyfVi~~lfg 424 (1279)
+++++++|+++++.++++
T Consensus 397 ~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 397 VILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999999999988763
No 4
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=8.5e-72 Score=638.86 Aligned_cols=365 Identities=28% Similarity=0.470 Sum_probs=328.3
Q ss_pred HHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000799 21 YRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 21 rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~ 100 (1279)
|++|+++|||++++++|+|||||+|++|+||+|||+|||++++++++++++|++++|+|+||||+++|.||++|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 101 FIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 180 (1279)
Q Consensus 101 ~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~i 180 (1279)
.+|+++++++++++++|++|+|+|+|++||+|+|++++++++++++++++.+ .++|++|+++.+++++|.+||++++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~-~~yr~~E~~~~~lv~~m~~~f~~~~~~ 159 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDK-PGLRILEAFVALLVTIVAICFAYELFY 159 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHh-CCceeHHHHHHHHHHHHHHHHHHHHhe
Confidence 9999999999999999999999999999999999999998887776555433 467999999999999999999999999
Q ss_pred hCCChhhhccc-cccccC---CChHHHHHHHhcccchhHHHHHhHHhhhhccccccccc-------------------hh
Q 000799 181 SQPEIPLSVNG-MLTKFS---GDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISK-------------------GA 237 (1279)
Q Consensus 181 s~Pd~~eV~~G-LVP~lp---~~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~-------------------~a 237 (1279)
++|||+++++| ++|++| .++++.++|++||||||||+|+||++|++|+.+++... +.
T Consensus 160 ~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (390)
T TIGR01197 160 AKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVSF 239 (390)
T ss_pred eCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHHH
Confidence 99999999877 569765 46788899999999999999999999999986543221 11
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-C-ccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000799 238 LCHDHFFAILCIFSGIYMVNYVLMNSAANLFYST-G-LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 238 ~r~D~~~gil~il~gsfLINlaImivaAavfygt-G-~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTl 315 (1279)
.+.|..+++ +.+.+++|.++++++|++||++ + .+..+..+++++|+|.+| ++|+++|++|||+|||+|++|+++
T Consensus 240 ~~~d~~~~i---~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G-~~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 240 SINEFVIAL---FTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFS-PAAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhh-HHHHHHHHHHHHHhHHHHHHHHHH
Confidence 233544443 2345668999999999999975 5 567789999999999998 799999999999999999999999
Q ss_pred HHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 000799 316 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM 390 (1279)
Q Consensus 316 AGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IM 390 (1279)
+||++|++|++|+.++|.|++++|+++++|+++++++.|..+|.++++++||+|+++|||+++|+++++|+|++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGREGLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 999999999999999999999999999999998887765557999999999999999999999999999999998
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=7.7e-61 Score=540.27 Aligned_cols=350 Identities=28% Similarity=0.430 Sum_probs=320.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 43 WAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIA 122 (1279)
Q Consensus 43 IaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiA 122 (1279)
|+|++|+||+|||+|||++++++++++++|++++|+|++|||+|+|+||++|||++.+++|+.+++++++++++|++|+|
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc-cccCC-Ch
Q 000799 123 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGML-TKFSG-DS 200 (1279)
Q Consensus 123 IALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLV-P~lp~-~s 200 (1279)
+|+++++|+|.+++++++++++++++++. ..++|++|+++.+++++|.+||++.+++++|||+++++|++ |++|. ++
T Consensus 81 ~al~ll~g~~~~~~~~~~~~~~~~ll~~~-~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~ 159 (358)
T PF01566_consen 81 IALNLLFGIPLWIWVLLVAVIAILLLWLS-SGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGS 159 (358)
T ss_pred HHHHhhcCCCcHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhH
Confidence 99999999999999999999999998833 23468999999999999999999999999999999999998 99998 88
Q ss_pred HHHHHHHhcccchhHHHHHhHHhhhhccccccc-----cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc
Q 000799 201 AFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNI-----SKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL 275 (1279)
Q Consensus 201 l~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~-----~~~a~r~D~~~gil~il~gsfLINlaImivaAavfygtG~~V 275 (1279)
++.++|++|||+|||++|+||+++++|+++.+. ..+..+.|+.+++ ++.+++|+++++++|.++|+.+..+
T Consensus 160 ~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~----~~~~li~~ai~i~~A~~l~~~~~~~ 235 (358)
T PF01566_consen 160 LLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGM----IVSFLINVAILIVAAAVLYPGGSEV 235 (358)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcccccch
Confidence 999999999999999999999999998865411 1445677887765 3578999999999999999777778
Q ss_pred cCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCc
Q 000799 276 LTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGA 355 (1279)
Q Consensus 276 ~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~ 355 (1279)
.+.+|++++|+|.+|++|++++|++|+|+|+|+|+++++++++++++++++++.+.+.|+..++...++|++++++..+.
T Consensus 236 ~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (358)
T PF01566_consen 236 ETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLIGA 315 (358)
T ss_pred hhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999756999999999999999999999999999999999999888888888888888888888776554
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchH
Q 000799 356 EG-VYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQ 397 (1279)
Q Consensus 356 ~~-~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~ 397 (1279)
.. |+++++++||+++++||++++|+++++|||++||+|||+|
T Consensus 316 ~~~~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 316 PGAPVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 33 5899999999999999999999999999999999999985
No 6
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=99.05 E-value=5e-07 Score=104.93 Aligned_cols=121 Identities=14% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAA----IFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 104 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma----~llQeLSARLGvVTGk~LAEl~Re~Ygk-~~~~~LwI 104 (1279)
|+-+.+.+++.+........+-.+|+..+|..+...+.. +++...--|.+ ..++.|.+++||++ ..+.+..+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 344556688999999999999999988877655433322 22322223333 67899999999998 45555445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 105 ~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
...+..+..-..++.|.+..++.++|+|.+.++++.++.+++...++-.
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~ 136 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGL 136 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcch
Confidence 5555566666678889999999999999999999988888777776644
No 7
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=99.05 E-value=4.8e-06 Score=98.83 Aligned_cols=120 Identities=13% Similarity=0.205 Sum_probs=80.2
Q ss_pred HhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHH---HH-hcCCcHHHHHHhhcCch-hHHHHHHHH
Q 000799 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQ-YLSARI---AV-VTGKDLAQICGEEYDKW-TCVFIGVQT 106 (1279)
Q Consensus 33 vAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQ-eLSARL---Gv-VTGk~LAEl~Re~Ygk~-~~~~LwI~a 106 (1279)
+.+++++.+.+......+..+|+...|......++++++. .++.|+ +- ..-.++.|.+++||++. .+++..+..
T Consensus 51 ~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~i~~ 130 (471)
T TIGR02119 51 LVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYNAITINDVLKARYNNKFLVWLSSISL 130 (471)
T ss_pred HHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCCchHHHHHHHH
Confidence 4456788888888888888888764333222222333221 123332 11 13468999999999954 455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhc
Q 000799 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 152 (1279)
Q Consensus 107 eLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgs 152 (1279)
.+..+.....++.|.+..++.++|+|.+.++++.++.+.+...++-
T Consensus 131 i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 131 LVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhh
Confidence 5556666667888999999999999999999988887777766654
No 8
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=99.01 E-value=3.7e-06 Score=100.88 Aligned_cols=121 Identities=13% Similarity=0.117 Sum_probs=84.2
Q ss_pred HhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-----CCcHHHHHHhhcCch---hHHHHH
Q 000799 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIG 103 (1279)
Q Consensus 33 vAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~-llQeLSARLGvVT-----Gk~LAEl~Re~Ygk~---~~~~Lw 103 (1279)
+.+.++....+......+..+|+..+|..+-..+..+ .+..++.|+-+-+ -.++.|.+++||++. .+.+..
T Consensus 51 ~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~~~~ 130 (502)
T PRK15419 51 AGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRIISA 130 (502)
T ss_pred HHHHHHHHHHHHHhhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHHHHH
Confidence 3456788888888888888999988787554333222 2334566665433 257999999999953 444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 104 VQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 104 I~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
+...+..+.....++.|.+..++.++|+|.+++++++++.+++..+++-.
T Consensus 131 i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 131 LVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 44444445555566788999999999999999999988888887777643
No 9
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.97 E-value=1.6e-07 Score=108.57 Aligned_cols=119 Identities=10% Similarity=0.225 Sum_probs=88.6
Q ss_pred HhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHhhcCchh--HHHHHHHHHHH
Q 000799 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDKWT--CVFIGVQTELS 109 (1279)
Q Consensus 33 vAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~ll-QeLSARLGvVTGk~LAEl~Re~Ygk~~--~~~LwI~aeLA 109 (1279)
+.+..++.+.+......+.++|+..+|..+...+..+++ -.++.|+=-....++.|.+++||++.. +++.++...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 445678999999999999999999998877666655544 446888887788999999999999987 55555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhh
Q 000799 110 VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFA 151 (1279)
Q Consensus 110 iIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lg 151 (1279)
.+.....++.|.+..++.++|+|...+++++++.+.+..+++
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~G 138 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFG 138 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT
T ss_pred hhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhh
Confidence 666666788899999999999999999988877766655554
No 10
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.95 E-value=2.9e-05 Score=92.78 Aligned_cols=119 Identities=13% Similarity=0.170 Sum_probs=77.4
Q ss_pred hhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHH---H-HhcCCcHHHHHHhhcCchh-HHHHHHHHHH
Q 000799 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARI---A-VVTGKDLAQICGEEYDKWT-CVFIGVQTEL 108 (1279)
Q Consensus 35 aAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~l-lQeLSARL---G-vVTGk~LAEl~Re~Ygk~~-~~~LwI~aeL 108 (1279)
+.+++.+.+.........+|+...|..+...+..++ +..++.|+ + -.-..+..|.++++|++.. +++..+...+
T Consensus 54 at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~l~~Ryg~~~~~~~~~i~~~~ 133 (483)
T PRK09442 54 ATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYNAVTLNDMLRARYQSRLLVWLASLSLLV 133 (483)
T ss_pred HHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHhCChHHHHHHHHHHHH
Confidence 556777777777777777887755554332222221 11223332 1 1235678999999999654 4444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 109 SVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 109 AiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
..+..-..++.|.+..++.++|+|.+.+++++++.+++...++-.
T Consensus 134 ~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 134 FFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccH
Confidence 455555667889999999999999999999888877777666543
No 11
>PRK12488 acetate permease; Provisional
Probab=98.95 E-value=7.9e-06 Score=99.36 Aligned_cols=125 Identities=17% Similarity=0.161 Sum_probs=94.0
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--HHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFC--QYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~ll--QeLSARLGvVTGk~LAEl~Re~Yg-k~~~~~LwI~a 106 (1279)
|+.+++.++..+.+......+..+|+.-+|..+- ..+++++ ..++.|+=-..-.++.|.+.+||+ |..+++..+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~g-~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYALG-VLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHH-HHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 5556677888888888888888999998776543 3333322 334555544444789999999998 56777777766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchh
Q 000799 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 107 eLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g 155 (1279)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+.+..+++-.++
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhH
Confidence 6667777778899999999999999999999999888888877765443
No 12
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.91 E-value=4e-05 Score=91.82 Aligned_cols=120 Identities=10% Similarity=0.150 Sum_probs=78.7
Q ss_pred hhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-----CCcHHHHHHhhcCch---hHHHHHH
Q 000799 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVT-----GKDLAQICGEEYDKW---TCVFIGV 104 (1279)
Q Consensus 34 AaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~l-lQeLSARLGvVT-----Gk~LAEl~Re~Ygk~---~~~~LwI 104 (1279)
++.++....+......+..+|+.-+|..+-..+..++ .-.++.|+-..+ -.++.|.+++||++. .+.+..+
T Consensus 48 ~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ai 127 (487)
T TIGR02121 48 GASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIISAL 127 (487)
T ss_pred HHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHHHH
Confidence 3445666666666667778888777775422222222 223455555443 356999999999953 3333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 105 ~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
+..+..+.....++.|.+..++.++|+|.+.+++++++.+++...++-.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 128 IILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhH
Confidence 4444444455567778999999999999999999988888777776643
No 13
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.91 E-value=2.2e-05 Score=95.60 Aligned_cols=123 Identities=15% Similarity=0.207 Sum_probs=90.1
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHH--HHHHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI--FCQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~--llQeLSARLGvVTGk~LAEl~Re~Yg-k~~~~~LwI~a 106 (1279)
|+-+++.+++...+......+..+|+.-+|..+ ..++++ ++-.++.|+--..-.++.|.+.+||+ |..+++..+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 445566678888888888888899999877653 333333 22334555544445789999999997 55676666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 107 eLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
.+..+..-..++.|.+..++.++|+|.+++++++++.+.+...++-.
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm 200 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGM 200 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 55566666678889999999999999999999998888887777644
No 14
>PRK09395 actP acetate permease; Provisional
Probab=98.90 E-value=1e-05 Score=98.27 Aligned_cols=125 Identities=16% Similarity=0.210 Sum_probs=92.4
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHhcCCcHHHHHHhhcC-chhHHHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF--CQYLSARIAVVTGKDLAQICGEEYD-KWTCVFIGVQT 106 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~l--lQeLSARLGvVTGk~LAEl~Re~Yg-k~~~~~LwI~a 106 (1279)
|+-+.+.++..+.+......+..+|+.-+|..+-. .++++ .-.++.|+=-..-.+..|.+++||+ |..+++..+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~~-~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGF-LVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 45566678888888888888888998877764432 22221 2234555544455789999999998 55777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchh
Q 000799 107 ELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 107 eLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g 155 (1279)
.+..+..-..++.|.+..++.++|+|.+.+++++++.+.+..+++-.+.
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 6666777778889999999999999999999999998888877764433
No 15
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.88 E-value=1.3e-05 Score=94.15 Aligned_cols=341 Identities=16% Similarity=0.144 Sum_probs=169.6
Q ss_pred hhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCcHHHHHHhhcCchhHHHH
Q 000799 25 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT--GKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 25 a~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVT--Gk~LAEl~Re~Ygk~~~~~L 102 (1279)
+.+|=.++++...+|+|=+.==.++|...-.-.+++++++-++++.-+.+-+++-.-+ |.++.+.+++.+||.++++.
T Consensus 4 ~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~ 83 (394)
T PF03222_consen 4 SILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVI 83 (394)
T ss_pred hHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHH
Confidence 4567778888888999998888776544444455556666667777777778877765 88899999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Q 000799 103 GVQTELSVILLDLTMVLGIAHGLNLLM------GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVL 176 (1279)
Q Consensus 103 wI~aeLAiIaaDIaEVIGiAIALnLLf------GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi 176 (1279)
++...+..-+.-.+-+.|.+-.+.-++ ++|.+++.++..+....+++++. +.+.++...++..|.++|++
T Consensus 84 ~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~----~~v~~~n~~lv~~~i~~~~~ 159 (394)
T PF03222_consen 84 GISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT----KAVDRINRVLVFGMIISFII 159 (394)
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHH
Confidence 655443333333333334433333333 34556655554444444444443 34455555556667777776
Q ss_pred HHHhhCCChh--hhccccccccCCChHHHHHHHhcccchhHHH-HHhHHhhhhccccccccchhhhhHHHHHHHHHHHHH
Q 000799 177 GVLISQPEIP--LSVNGMLTKFSGDSAFSIMSLLGASMMPHNF-YLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGI 253 (1279)
Q Consensus 177 ~l~is~Pd~~--eV~~GLVP~lp~~sl~~aVALIGATIMPhnl-yLHSaLVqsR~~~~d~~~~a~r~D~~~gil~il~gs 253 (1279)
..+..-|.|. .+.. .+..+. ....+...+--.+.-.++ ..=+.+++--+++ .++.++-.+.+....++ .
T Consensus 160 l~~~~~p~~~~~~L~~--~~~~~~-~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d----~~k~~~ai~~Gs~i~lv-~ 231 (394)
T PF03222_consen 160 LVVYLIPHWNPSNLLD--APPSPS-DWSYILPALPVLVFSFGFHNIVPSLVKYLGGD----PKKIRKAIIIGSLIPLV-M 231 (394)
T ss_pred HHHHHhhhcCHHHhhc--cccccc-cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc----HHHHHHHHHHHHHHHHH-H
Confidence 6655556654 2222 111111 111122222211111111 0112333322222 12233333333221111 1
Q ss_pred HHHHHHHHHHHHH---h---hccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000799 254 YMVNYVLMNSAAN---L---FYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 254 fLINlaImivaAa---v---fygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
+++ ..+.+++.. . ....| .+.......+....++++..++.-+=-++|-.+|-+...++-.--+.+.+++
T Consensus 232 yl~-w~~~~lg~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 232 YLL-WVFSILGSLPREQFAEAIAQG---GNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHH-HHHHHHhcCCHHHHHHHHhcC---CChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 111 111111100 0 00111 1223344456666666665554444444566677776677643334445565
Q ss_pred CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 328 DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 328 ~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtN 385 (1279)
+.+.+.| ..+..++.+|.++++++. -++....+.++....++ =+.++|.+..-+
T Consensus 308 ~~~~~~r-~~~~~ltf~ppl~~a~~~-p~~F~~al~~aG~~~~i--l~~ilP~~m~~~ 361 (394)
T PF03222_consen 308 KNNSSGR-LKTWLLTFLPPLIFALLF-PNGFLIALGYAGIGIAI--LLGILPALMVWK 361 (394)
T ss_pred Cccccch-HHHHHHHHHhHHHHHHHC-cHHHHHHHHhhcHHHHH--HHHHHHHHHHHH
Confidence 3333333 444456677777766643 34566777777643332 234455554433
No 16
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.67 E-value=0.00012 Score=86.46 Aligned_cols=341 Identities=14% Similarity=0.086 Sum_probs=162.5
Q ss_pred hhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHH
Q 000799 25 PAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNF-AAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 25 a~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStI-ma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+.+|=.++++...+|+|=+.==.++|...=+-.+-+++++-+ |.+.-.. -+|.-.- -|.++-+..++.+||.++++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 568889999999999999998888876433333333333333 3333333 3343222 36789999999999988877
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHh---h--CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH
Q 000799 102 IGVQTELSVILLDLTMVLGI-AHGLNLL---M--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYV 175 (1279)
Q Consensus 102 LwI~aeLAiIaaDIaEVIGi-AIALnLL---f--GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFV 175 (1279)
.|+...+...+.-.+=+.|. .+--|.+ + ++|.+.+.++..+...++++++ .+.+.++..+++..|.++|+
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g----~~~v~~~n~~L~~~~ii~~~ 158 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVG----TSSVDLFNRFLFSAKIIFLV 158 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHH
Confidence 66554443333222222231 1111221 3 3466666555444444455544 34555555556666777777
Q ss_pred HHHHhhCCChhhh-ccccccccCCChHHHH----HHHhcc-cchhHHHHHhHHhhhhccccccccchhhhhHHHHHHHHH
Q 000799 176 LGVLISQPEIPLS-VNGMLTKFSGDSAFSI----MSLLGA-SMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCI 249 (1279)
Q Consensus 176 i~l~is~Pd~~eV-~~GLVP~lp~~sl~~a----VALIGA-TIMPhnlyLHSaLVqsR~~~~d~~~~a~r~D~~~gil~i 249 (1279)
+.....-|+|... +.. .| ...+.++.+ +--+|- .++|- +++-.+. + .+++++-...+....
T Consensus 159 ~~~~~l~p~~~~~~L~~-~~-~~~~~~~~~iPvl~~SFgfh~iIps-------l~~y~~~--~--~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 159 VMLALMMPHIHKVNLLT-LP-LQQGLALSAIPVIFTSFGFHGSVPS-------IVSYMGG--N--IRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHhcCHHHHhc-CC-ccccHHHHHHHHHHHHhhCCcccHH-------HHHHhCc--C--HHHHHHHHHHHHHHH
Confidence 6666566776521 110 12 111222221 222222 12232 2211111 1 122333323332211
Q ss_pred HHH-HHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000799 250 FSG-IYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 250 l~g-sfLINlaImivaAavfygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~ 328 (1279)
++. .+.+..++..+.+..+...-.+-.+..+..+.+...+++++...+.-+-.+.|..+|-+...++-.--+.+.++++
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~ 305 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR 305 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 100 0111111111112211110001112334455666666666665554444445666777777776433334444444
Q ss_pred cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000799 329 IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 329 i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR 387 (1279)
.+... |..+.++..+|.++++.+. -+.....+.++.++.++. +.++|.+..-..|
T Consensus 306 ~~~~~-r~~~~~l~flppli~a~~~-P~~F~~al~~aG~~~ail--~~ilP~~m~~~~r 360 (403)
T PRK15132 306 NTVGG-RLQTGLITFLPPLAFALFY-PRGFVMALGYAGVALAVL--ALLLPSLLVWQSR 360 (403)
T ss_pred ccccC-CchhehhhHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHh
Confidence 33322 4445566677888776643 234555566666543332 3455655444433
No 17
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.64 E-value=0.00045 Score=84.29 Aligned_cols=121 Identities=12% Similarity=0.204 Sum_probs=86.2
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLV----FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDK-WTCVFIGV 104 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLL----StIma~llQeLSARLGvVTGk~LAEl~Re~Ygk-~~~~~LwI 104 (1279)
|+-+.+.++...........+..+||..+|..+- ..++++++-..--|+|. .++.|.+.+||++ ..+++..+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 4445666788888888888888889887766531 12233444444455554 4789999999984 45665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 105 QTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 105 ~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
...+..+.....++.|.+..++.++|+|.+.++++.++++.+...++-.
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~ 165 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGM 165 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 5555666666677789999999999999999999988888777776543
No 18
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.60 E-value=0.00016 Score=86.23 Aligned_cols=328 Identities=11% Similarity=0.018 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHH
Q 000799 56 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELST 135 (1279)
Q Consensus 56 ~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~ 135 (1279)
+-++.+++.++++.++--..+-.|..||..=...-|..+|.+.+++.-++..+..++--.-+++=.+.+.+...++|.++
T Consensus 53 ~si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~ 132 (442)
T COG1457 53 QSLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWA 132 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHH
Confidence 45778899999999999999999999999999999999998888776665556666654444443344333346889999
Q ss_pred HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH-hhCC-ChhhhccccccccCCChHHHHHHHhcccch
Q 000799 136 CVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL-ISQP-EIPLSVNGMLTKFSGDSAFSIMSLLGASMM 213 (1279)
Q Consensus 136 gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~-is~P-d~~eV~~GLVP~lp~~sl~~aVALIGATIM 213 (1279)
++++.++.+.+..++| |+..+++|++... ++.+.|++... ..++ +.......-.|..+ .++..+++++=+..+
T Consensus 133 ~ili~g~l~~l~~ifG-~r~l~~l~~~a~~---~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~-~~fl~a~slv~g~~~ 207 (442)
T COG1457 133 GILIIGVLMTLVTIFG-YRALHKLERIAVP---LLLLLFLYLLALLFRSKGGLDALWVKGPTSP-LSFLSALSLVIGSFA 207 (442)
T ss_pred HHHHHHHHHHHHHHHh-HHHHHHHHHHHHH---HHHHHHHHHHHHHHhcccccceeeccCCCcc-hhHHHHHHHHHHHHH
Confidence 9999998888887775 4455666666443 34444443332 2221 22221111113322 233333333222233
Q ss_pred hHHHHHhHHhhhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccch
Q 000799 214 PHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPV 293 (1279)
Q Consensus 214 PhnlyLHSaLVqsR~~~~d~~~~a~r~D~~~gil~il~gsfLINlaImivaAavfygtG~~V~tl~dAa~aLeplLGG~~ 293 (1279)
-+-.|. +-.. |-.+++ +. .|.++. .+.+.++-+.++++++|..--..|... . +.+ ....+|+ +
T Consensus 208 sw~~~~-aDys--Ry~~~~---t~--~~~~~~---~~~G~~l~~~~~~ilGa~~a~a~g~~~-~---~~~-~~~~~G~-~ 270 (442)
T COG1457 208 SWGPYA-ADYS--RYAPSP---TP--SKAFLA---AVLGFFLGTSFMMILGAALAAAAGNAD-S---IAD-VMLGLGG-F 270 (442)
T ss_pred hhhhhh-hhhh--hhcCCC---ch--HHHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCc-h---HHH-HHHhccc-H
Confidence 222222 1111 111111 11 233332 234556667777777776533334322 1 222 2223452 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Q 000799 294 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIML 373 (1279)
Q Consensus 294 A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~L 373 (1279)
+ ..-.+++..+..++.....|++..-+..... +.+++.+..+..+ . +.+++.+++.. -...+..|...+...+-
T Consensus 271 g-~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~-~l~k~~~~v~~~v-~-igt~la~~~~~--f~~~f~~Fl~~i~~~i~ 344 (442)
T COG1457 271 G-LPAILILVLGTVTTNANNLYSAGLSFANIIP-KLSKVTRVVIAGV-G-IGTLLALAGPF--FYNFFENFLLLLGYFIP 344 (442)
T ss_pred H-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhhh-hhhhHHHHHHHHH-H-HHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 2 2223444555555556667766554444432 1233333333322 1 33333222211 13445566667777888
Q ss_pred HHHHHHHH-HHHhccc-----cccCCCchHHHHHHHHHHHHHHH
Q 000799 374 PSSVIPLF-RVASSRQ-----IMGVHKISQYHEFLVLITFMGML 411 (1279)
Q Consensus 374 PFaLIPLL-~LtNsR~-----IMGe~rnS~~lnILawli~llIi 411 (1279)
|...+-+- ++..+|. +...++.-.+.-..+|++.+++-
T Consensus 345 P~~~I~iad~~~~rr~~~~~~~~~~~~~~~~~g~~aw~~~~iv~ 388 (442)
T COG1457 345 PWGGVMIADYFIVRRRYSAYNIDDWEKGENLPGGVAWIAGLIVG 388 (442)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccccchHHHHHHHHHH
Confidence 88877665 3444433 33323222333445555554444
No 19
>PRK10483 tryptophan permease; Provisional
Probab=98.59 E-value=7.5e-05 Score=88.46 Aligned_cols=337 Identities=11% Similarity=0.099 Sum_probs=160.8
Q ss_pred HHhhhhHHHHHhhhccccchHHHH-HHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCcHHHHHHhhcCchh
Q 000799 23 LVPAVLPVLLISIGYVDPGKWAVI-IEGGAHFGFDLVALMLVFNFAA---IFCQYLSARIAVVTGKDLAQICGEEYDKWT 98 (1279)
Q Consensus 23 lLa~LGPGfLvAaAyIDPGnIaT~-lQAGA~fGY~LLWVLLLStIma---~llQeLSARLGvVTGk~LAEl~Re~Ygk~~ 98 (1279)
-.+.+|=.+|++...+|.|=++=- ..+|+-|.+.++-.++.-.+|. +++-|..-+.. -|.++..+.++..||++
T Consensus 10 ~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g 87 (414)
T PRK10483 10 SPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGW 87 (414)
T ss_pred CCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHH
Confidence 346789999999999999987643 3344445444443333222222 23555555543 47789999999999988
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh-----CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 000799 99 CVFIGVQT---ELSVILLDLTMVLGIAHGLNLLM-----GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGII 170 (1279)
Q Consensus 99 ~~~LwI~a---eLAiIaaDIaEVIGiAIALnLLf-----GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM 170 (1279)
.++.|+.. ..+.+.+.+. |.+--++-++ ++|.+++.++..+..-.+++.+. +.++++..++++.|
T Consensus 88 ~~i~~~s~lfl~Y~Ll~AYis---g~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt----~~vd~~n~~l~~~~ 160 (414)
T PRK10483 88 NVVNGISIAFVLYILTYAYIS---ASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST----KAVSRMTAIVLGAK 160 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---CcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHH
Confidence 77655443 3333444443 3332222232 45888877776666656666554 34444444455667
Q ss_pred HHHHHHHHHhhCCCh--hhhccccccccCCChHHHHHHHhcccchhHHH--HHh----HHhhhhccccccccchhhhhHH
Q 000799 171 LLSYVLGVLISQPEI--PLSVNGMLTKFSGDSAFSIMSLLGASMMPHNF--YLH----SSIVRRHQGQVNISKGALCHDH 242 (1279)
Q Consensus 171 ~LaFVi~l~is~Pd~--~eV~~GLVP~lp~~sl~~aVALIGATIMPhnl--yLH----SaLVqsR~~~~d~~~~a~r~D~ 242 (1279)
.++|++.+...-|+. ..+.+. +.-.+...-.+. ...|-.+ |-| +.+++.-+ .| .+++++-.
T Consensus 161 i~~f~~~~~~l~~~i~~~~L~~~--~~~~~~~~~~~~-----~alPvl~~SFgfh~iIPsl~~y~~--~d--~~kir~~I 229 (414)
T PRK10483 161 VITFFLTFGSLLGHVQPATLFNV--AESNASYAPYLL-----MTLPFCLASFGYHGNVPSLMKYYG--KD--PKTIVKCL 229 (414)
T ss_pred HHHHHHHHHHHHhhcCHHHHhcc--ccccchhHHHHH-----HHHHHHHhhccCCCcchHHHHHhC--cC--HHHHHHHH
Confidence 777776554433432 222222 110111000010 1112222 211 12222211 11 12333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCC-----ccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 000799 243 FFAILCIFSGIYMVNYVLMNSAANLFYSTG-----LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSG 317 (1279)
Q Consensus 243 ~~gil~il~gsfLINlaImivaAavfygtG-----~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAG 317 (1279)
..+... .+++-++.+.+.-..+..++ ..-.+.....+.+...+++++...++.+-.+.|..+|-+...++-
T Consensus 230 ~iGs~I----plv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL 305 (414)
T PRK10483 230 VYGTLM----ALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGL 305 (414)
T ss_pred HHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333211 11111111111111010000 001123333455565555555444444444456666777666664
Q ss_pred HHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000799 318 QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 318 q~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR 387 (1279)
.--+.+.++++.+ ...|..+.++..+|-++++++.- ++....+.++..+.++.. .++|.+..-..|
T Consensus 306 ~d~l~D~~k~~~~-~~~r~~~~~ltflPPl~~al~~P-~~Fl~AL~yAG~~~~il~--~ilP~lM~~~~R 371 (414)
T PRK10483 306 FDYLADLFGFDDS-AMGRFKTALLTFLPPVVGGLLFP-NGFLYAIGYAGLAATIWA--AIVPALLARASR 371 (414)
T ss_pred HHHHHHHhCCCCc-cccceeeehhhHhhHHHHHHHhH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 3333444555432 22344445666778887776532 356667777776644433 456665554444
No 20
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.57 E-value=0.00083 Score=81.22 Aligned_cols=137 Identities=14% Similarity=0.223 Sum_probs=95.4
Q ss_pred hhHHHH-HhhhccccchHHHHHHHHHHH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHhc----CCcHHHHHHhhcC-ch
Q 000799 27 VLPVLL-ISIGYVDPGKWAVIIEGGAHF--GFDLVALMLVFNFAAI-FCQYLSARIAVVT----GKDLAQICGEEYD-KW 97 (1279)
Q Consensus 27 LGPGfL-vAaAyIDPGnIaT~lQAGA~f--GY~LLWVLLLStIma~-llQeLSARLGvVT----Gk~LAEl~Re~Yg-k~ 97 (1279)
+||+.. ++++.-+-+.|+---..|..| |+.-+|..+..++..+ ..-.++.|+=..+ -.++.|.+++||+ +.
T Consensus 40 lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~ 119 (493)
T COG0591 40 LGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKI 119 (493)
T ss_pred CChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChH
Confidence 555522 233345555555555555555 8999998777643333 3344566666666 6789999999999 77
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Q 000799 98 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLW 163 (1279)
Q Consensus 98 ~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li 163 (1279)
.+.+..+...+..+..-..++.|.+..++.++|++...+.++.++.+.+..+++-.+..-.-+.+-
T Consensus 120 lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iq 185 (493)
T COG0591 120 LRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDFIQ 185 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 777766666667777766778899999999999999999888888777777777554444444443
No 21
>PRK15049 L-asparagine permease; Provisional
Probab=98.55 E-value=0.0028 Score=76.58 Aligned_cols=38 Identities=8% Similarity=0.069 Sum_probs=25.8
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
.+++. .|.+++..++.++++.+.+++..+..+++..++
T Consensus 293 ~~~~~-~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l 330 (499)
T PRK15049 293 TFFSK-LGVPYIGSIMNIVVLTAALSSLNSGLYCTGRIL 330 (499)
T ss_pred HHHHH-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 455777778888888888888877777654443
No 22
>PRK10484 putative transporter; Provisional
Probab=98.50 E-value=0.0048 Score=75.01 Aligned_cols=109 Identities=16% Similarity=0.187 Sum_probs=59.0
Q ss_pred HHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHH
Q 000799 32 LISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAI-FCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 110 (1279)
Q Consensus 32 LvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~-llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAi 110 (1279)
-+.+.++..+.+......+..+|+..+|..+...+..+ +.-.++.|+--.-=.+..|.+++||++..+.++.+...+..
T Consensus 48 sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~ 127 (523)
T PRK10484 48 SLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRIVSILFLIGY 127 (523)
T ss_pred HHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 34455688888888888888888776532222222211 11223444432223478999999999876554433322222
Q ss_pred HHHHHHH-HHHHHHHHHH------hhCChhHHHHHHH
Q 000799 111 ILLDLTM-VLGIAHGLNL------LMGVELSTCVFLA 140 (1279)
Q Consensus 111 IaaDIaE-VIGiAIALnL------LfGIPL~~gVLIT 140 (1279)
+...++. +.+.+++++. ++|+|..+++.++
T Consensus 128 ~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~ 164 (523)
T PRK10484 128 VVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLL 164 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHH
Confidence 2222222 2233444432 4688877766553
No 23
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.50 E-value=0.00031 Score=83.35 Aligned_cols=334 Identities=12% Similarity=0.096 Sum_probs=156.4
Q ss_pred hhhhHHHHHhhhccccchHHHH-HHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000799 25 PAVLPVLLISIGYVDPGKWAVI-IEGGAHFGFDLVALMLVFNFA---AIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 25 a~LGPGfLvAaAyIDPGnIaT~-lQAGA~fGY~LLWVLLLStIm---a~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~ 100 (1279)
+.+|=.+|++...+|.|=++=- ..+|+-|-+.++-.++.-.+| ++++-|...+.. .|.++..+.++..||.+.+
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 6789778888888999977643 333444443333222222222 224555555553 5888999999999998887
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHh----h--CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 000799 101 FIGVQT---ELSVILLDLTMVLGIAHGLNLL----M--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIIL 171 (1279)
Q Consensus 101 ~LwI~a---eLAiIaaDIaEVIGiAIALnLL----f--GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~ 171 (1279)
+.|+.. ..+...+.++ |.+--++-+ + ++|..++.++.++..-.+++.+. +..+++++ ++++.|.
T Consensus 88 i~~~~~~fl~Y~Ll~AYis---ggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr---~l~~~~i 160 (415)
T PRK09664 88 ISGITVAFVLYILTYAYIS---ANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITS---LFLGLKI 160 (415)
T ss_pred HHHHHHHHHHHHHHHHHHh---ccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHH---HHHHHHH
Confidence 776543 3333334443 322222222 2 45666554444444445555543 23445444 4456677
Q ss_pred HHHHHHHHhhCCChh--hhccccccccCCC-----hHHHH----HHHhcc-cchhHHHHHhHHhhhhccccccccchhhh
Q 000799 172 LSYVLGVLISQPEIP--LSVNGMLTKFSGD-----SAFSI----MSLLGA-SMMPHNFYLHSSIVRRHQGQVNISKGALC 239 (1279)
Q Consensus 172 LaFVi~l~is~Pd~~--eV~~GLVP~lp~~-----sl~~a----VALIGA-TIMPhnlyLHSaLVqsR~~~~d~~~~a~r 239 (1279)
++|++.+...-|+.. .+... +...++ .++.+ +.-+|- .++|-. ++-.+ ++ .++.+
T Consensus 161 i~f~~~~~~l~~~i~~~~L~~~--~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl-------~~y~~--~d--~~~~~ 227 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILRDA--TSTTAGTSYFPYIFMALPVCLASFGFHGNIPSL-------IICYG--KR--KDKLI 227 (415)
T ss_pred HHHHHHHHHHhhcccHHHHhcC--ccccccchHHHHHHHHHHHHHHhhhCCCcchHH-------HHHhC--cc--HHHHH
Confidence 777765554444432 22211 111111 12111 222232 223322 21111 11 11223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHhhc---cCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000799 240 HDHFFAILCIFSGIYMVNYVLMN-SAANLFY---STGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 240 ~D~~~gil~il~gsfLINlaImi-vaAavfy---gtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTl 315 (1279)
+-.+++....++..++...+++. +....|. ..| .+..+....+.....+++...+..+-.+.|..+|-+..++
T Consensus 228 kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g---~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~L 304 (415)
T PRK09664 228 KSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSG---GNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTL 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcC---CCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33233322111111222222222 0000000 011 1222322223222344555555544445566677777777
Q ss_pred HHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000799 316 SGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 316 AGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR 387 (1279)
+-.--+.+.++++.+. ..|..+.+++.+|-+++++++- ++....+.++....+ .=+.++|.+..-+.|
T Consensus 305 GL~D~l~D~~~~~~~~-~~r~~~~~ltflPPl~~al~~P-~gFl~AL~yAG~~~~--il~~ilP~lM~~~~R 372 (415)
T PRK09664 305 GLFDYLADLFKIDNSH-GGRFKTVLLTFLPPALLYLIFP-NGFIYGIGGAGLCAT--IWAVIIPAVLAIKAR 372 (415)
T ss_pred HHHHHHHHHhCCCCcc-ccceeeehhhHhhhHHHHHHhh-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHh
Confidence 6443444555655332 3344455666778877766532 346666777776533 334456666555544
No 24
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.49 E-value=0.00041 Score=82.89 Aligned_cols=150 Identities=14% Similarity=0.071 Sum_probs=95.4
Q ss_pred HHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHhhcCchhHHHHHHHHH
Q 000799 31 LLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVT---GKDLAQICGEEYDKWTCVFIGVQTE 107 (1279)
Q Consensus 31 fLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVT---Gk~LAEl~Re~Ygk~~~~~LwI~ae 107 (1279)
+.++...+|+|=+.==.++|...=+-++-+++++-++++..-.+-.|.-.-. |.++.+..++++||.++++.|+...
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf 105 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF 105 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence 3444557999999999999977766677777777777777766666765554 6889999999999988877655443
Q ss_pred HH---HHHHHH---HHHHHHHHHHHHhhCC---hhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 108 LS---VILLDL---TMVLGIAHGLNLLMGV---ELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGV 178 (1279)
Q Consensus 108 LA---iIaaDI---aEVIGiAIALnLLfGI---PL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l 178 (1279)
++ ++...+ ++.+..-+ .| .+|+ |.++..++.++....++++ |.+.+.++...++..++++|+...
T Consensus 106 f~ly~ll~aY~~~itn~l~sfl-~~-ql~~~~~~r~l~slifv~~l~~iv~~----G~~~v~kv~~~Lv~~~i~~l~~l~ 179 (443)
T PRK13629 106 FAICPLLWIYGVTITNTFMTFW-EN-QLGFAPLNRGFVALFLLLLMAFVIWF----GKDLMVKVMSYLVWPFIASLVLIS 179 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hh-hcCcCCccHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 333332 22221111 11 1343 5555554444444444443 345667777777777888888777
Q ss_pred HhhCCChh
Q 000799 179 LISQPEIP 186 (1279)
Q Consensus 179 ~is~Pd~~ 186 (1279)
+..-|.|.
T Consensus 180 ~~LiP~w~ 187 (443)
T PRK13629 180 LSLIPYWN 187 (443)
T ss_pred HHHHHHcC
Confidence 77778776
No 25
>PRK11017 codB cytosine permease; Provisional
Probab=98.46 E-value=0.0025 Score=75.17 Aligned_cols=107 Identities=9% Similarity=0.073 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCChhH
Q 000799 56 DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL-LDLTMVLGIAHGLNLLMGVELS 134 (1279)
Q Consensus 56 ~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIa-aDIaEVIGiAIALnLLfGIPL~ 134 (1279)
+-++.+++++++..++--+.++.|..+|.+-.-.+|..||.+...+..+...+..++ .-++..+ .+.+++-++|++..
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~-~~~~l~~~~~~~~~ 121 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAM-FAIPVVKATGLDIN 121 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhCCCHH
Confidence 456788888999999999999999999999999999999987666544433333333 2233333 23455557788776
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000799 135 TCVFLAAADAILFPFFAGQLENYKAKLLWI 164 (1279)
Q Consensus 135 ~gVLITav~t~LLL~lgsY~g~rklE~li~ 164 (1279)
.++++.++...++.+++ ++..++++++..
T Consensus 122 ~~~~i~~~l~~~~~~~G-~~~i~~~~~~~~ 150 (404)
T PRK11017 122 LLIVLSGLLMTVTAYFG-ISALTILSRIAV 150 (404)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 66666566555555554 345556666543
No 26
>PRK10249 phenylalanine transporter; Provisional
Probab=98.38 E-value=0.0084 Score=71.50 Aligned_cols=102 Identities=10% Similarity=0.066 Sum_probs=50.0
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALML----VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 LGPGfLvAaA-yIDPGnIaT~lQAGA~fGY~LLWVLL----LStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+|=|-++..| ++.||..... +|. ..+|..+ +..+.++.+-||+.++=. +| +...-.++.+|+.++++
T Consensus 31 i~ig~~IGsGif~~~g~~~~~--aGp----~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g~~~gf~ 102 (458)
T PRK10249 31 IALGGAIGTGLFLGIGPAIQM--AGP----AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWGPFAGFL 102 (458)
T ss_pred hhhhcccchhHHHHHHHHHHh--cCc----HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhChHHHHH
Confidence 4444444444 4666665543 332 2223333 333444455566655443 45 67778888899877655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHH
Q 000799 102 IGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTC 136 (1279)
Q Consensus 102 LwI~aeLAiIaaDIaEVIGiAIALnLLfG-IPL~~g 136 (1279)
......++.+.....|+.+.+.-++.+++ .|.+..
T Consensus 103 ~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 138 (458)
T PRK10249 103 SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIW 138 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHH
Confidence 32222222222334455555544554443 455543
No 27
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.37 E-value=0.00083 Score=77.40 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=48.5
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcCchhHH
Q 000799 280 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVY 359 (1279)
Q Consensus 280 dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G~~~~v 359 (1279)
...+++...+|++|...+..++.+.|..+|.+.+.++-.--+.+.++++.++ .+|....+++.+|.++++.+... ...
T Consensus 254 ~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~-~~~~~~~~~~~~~pl~~a~~~p~-~~~ 331 (381)
T TIGR00837 254 GLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSK-KGRFKTGLLTFLPPLVFALFYPE-GFL 331 (381)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCCchhhhhhHHhHHHHHHHhhH-HHH
Confidence 3344566667767777777788778888888877777443355555543222 22334445556677766654432 222
Q ss_pred HHHHHHH
Q 000799 360 QLLIFTQ 366 (1279)
Q Consensus 360 qLLI~aQ 366 (1279)
..+.++.
T Consensus 332 ~~l~~~G 338 (381)
T TIGR00837 332 YAIGYAG 338 (381)
T ss_pred HHHHHHH
Confidence 3344444
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=98.35 E-value=0.017 Score=69.15 Aligned_cols=40 Identities=15% Similarity=0.083 Sum_probs=27.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
...+++. +|++++..++.++++.+.+++..++.+++..++
T Consensus 277 ~~~~~~~-~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l 316 (471)
T PRK11387 277 FVLVFEK-VGIPYAADIFNFVILTAILSAANSGLYASGRML 316 (471)
T ss_pred HHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3445555 466888888888888888888777777654433
No 29
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.35 E-value=0.00051 Score=81.56 Aligned_cols=274 Identities=14% Similarity=0.188 Sum_probs=137.7
Q ss_pred hhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---------HHHHHHhhcCc-hhHHHHHH
Q 000799 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKD---------LAQICGEEYDK-WTCVFIGV 104 (1279)
Q Consensus 35 aAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~---------LAEl~Re~Ygk-~~~~~LwI 104 (1279)
++-+|+|||+--..|=+.=|-.-+..+.++.++++...+.-.-||+...+. .+--+++-+++ |..+++.+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 446999999888887777788877777777788888877777777665432 44445554443 33322222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 000799 105 QTELSV-ILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI--- 180 (1279)
Q Consensus 105 ~aeLAi-IaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~i--- 180 (1279)
++.++. +...+.+.--++.+++.-|++|.|+..++.++.+.+++ ++ |.+++-++...++=+|.+.|++..+.
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~vi-~G---GikrI~~v~~~lVP~Ma~~Yi~~~l~ii~ 185 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALVI-FG---GIKRIAKVSEKLVPFMAILYILGGLIIII 185 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH-Hc---chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211111 11123333345666776789976665444444444333 33 56676666666666777777654432
Q ss_pred hC-CChhhhcccccc-ccCCChHHHHHHHhcccchhHHHH-HhHHh------------hhhccccccccchh------hh
Q 000799 181 SQ-PEIPLSVNGMLT-KFSGDSAFSIMSLLGASMMPHNFY-LHSSI------------VRRHQGQVNISKGA------LC 239 (1279)
Q Consensus 181 s~-Pd~~eV~~GLVP-~lp~~sl~~aVALIGATIMPhnly-LHSaL------------VqsR~~~~d~~~~a------~r 239 (1279)
.+ .+.+.++.-.+- -+..++ ..-|.+|++++--.-+ +.-++ +..--..+++.+.. .+
T Consensus 186 ~n~~~ip~~~~~If~~AF~~~a--a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vF 263 (416)
T PF01235_consen 186 INIDQIPAAFSLIFSSAFTPKA--AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGLVQMFEVF 263 (416)
T ss_pred hhhhhHHHHHHHHHHHHcCCcc--chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHeeeeeehHh
Confidence 23 233333221110 011111 1235566665321111 00000 00000000111110 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000799 240 HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 319 (1279)
Q Consensus 240 ~D~~~gil~il~gsfLINlaImivaAavfygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~ 319 (1279)
.|+++ .|. ++.+++++... . ..+......+=...+++..+| +|+.++.++.++.-+++|.++..+-++.
T Consensus 264 iDTii--VCt------~TalvIl~tG~-~-~~~~~~~g~~l~~~Af~~~~g-~~g~~~v~i~l~lFafTTilg~~~yge~ 332 (416)
T PF01235_consen 264 IDTII--VCT------ITALVILVTGV-W-SWGSGLEGAALTQAAFSTVLG-SWGPYFVAIALFLFAFTTILGWYYYGEK 332 (416)
T ss_pred HHHHH--HHH------HHHHHhhccCC-C-CCCCcchHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 111 11222222111 0 111112222223456888887 7999999999999999999999888877
Q ss_pred HHHhhh
Q 000799 320 VLQDFL 325 (1279)
Q Consensus 320 VmeGFL 325 (1279)
..+-++
T Consensus 333 ~~~yl~ 338 (416)
T PF01235_consen 333 CAEYLF 338 (416)
T ss_pred HHHHHc
Confidence 666555
No 30
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.34 E-value=0.0029 Score=75.30 Aligned_cols=132 Identities=7% Similarity=0.046 Sum_probs=63.3
Q ss_pred cccccccCC-CCchhHHHHHhhhhHHHHHhhh-ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000799 6 MDAELANSN-YQSGVLYRLVPAVLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTG 83 (1279)
Q Consensus 6 me~~~~~~~-~~~~~~rklLa~LGPGfLvAaA-yIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTG 83 (1279)
||..++... ++.-+.++.. .+|=|-++..| ++.||......-.++-++| +..-++..++++.+-|++.++=. +|
T Consensus 1 ~~~~~~~~~l~r~L~~~~~~-~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~--~i~gi~~~~v~~s~aEl~s~~P~-aG 76 (456)
T PRK10238 1 MEGQQHGEQLKRGLKNRHIQ-LIALGGAIGTGLFLGSASVIQSAGPGIILGY--AIAGFIAFLIMRQLGEMVVEEPV-AG 76 (456)
T ss_pred CCccccchhhhccCcHHHHH-HHHhhccccchHHHhhHHHHHhcCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcCC-CC
Confidence 555444332 2233333332 34444444444 4677776664322233332 11122333344445566666654 34
Q ss_pred CcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHH
Q 000799 84 KDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAA 142 (1279)
Q Consensus 84 k~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfG-IPL~~gVLITav 142 (1279)
+...-.++.+|+...++......++.+.....+..+.+.-++..++ .|.|...++..+
T Consensus 77 -g~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~ 135 (456)
T PRK10238 77 -SFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFV 135 (456)
T ss_pred -CHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHH
Confidence 5666677789987766543222233333334444455545555553 466655444333
No 31
>PRK11375 allantoin permease; Provisional
Probab=98.30 E-value=0.0092 Score=72.29 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000799 55 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 55 Y~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~L 102 (1279)
++.++++++++++..++-.+.++.|..+|.+..-.+|..||.+...+.
T Consensus 60 ~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~l~ 107 (484)
T PRK11375 60 FSIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGALFP 107 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccchHH
Confidence 456788899999999999999999999999999999999997665443
No 32
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=98.28 E-value=0.015 Score=69.45 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 320 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~V 320 (1279)
++.+..+| +++..++.++++.+.+++..+...++..+
T Consensus 272 ~~~~~~~g-~~~~~~i~i~~~is~~~~~~~~~~~~sR~ 308 (473)
T TIGR00905 272 AVLEMIVG-KWGAVLISLGLIISVLGSLLSWTMLAAEV 308 (473)
T ss_pred HHHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555 67777888888888888877777665433
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.27 E-value=0.0035 Score=81.45 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000799 294 VPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 294 A~~LFAIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
...++.+|++++.+++.+++.+++..++..
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~A 415 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQA 415 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346888899999999998888876555443
No 34
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.26 E-value=0.00098 Score=78.73 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhc-CCcHHHHHHhhcCchhHHHHHHH
Q 000799 58 VALMLVFNFAAIFCQYLSAR------IAVVT-GKDLAQICGEEYDKWTCVFIGVQ 105 (1279)
Q Consensus 58 LWVLLLStIma~llQeLSAR------LGvVT-Gk~LAEl~Re~Ygk~~~~~LwI~ 105 (1279)
.|..+++.++++++-.+.+| +.--. |+++.|..++.+||+++.++++.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~l 87 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLL 87 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHH
Confidence 45555556666666555555 34444 78999999999999887765443
No 35
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.21 E-value=0.03 Score=67.08 Aligned_cols=38 Identities=18% Similarity=0.093 Sum_probs=22.9
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
+.+.. .|+++...++.+.++.+.+++.....++...++
T Consensus 284 ~~~~~-~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 321 (469)
T PRK11049 284 ELFVL-VGLPAAASVINFVVLTSAASSANSGVFSTSRML 321 (469)
T ss_pred HHHHH-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33443 355666677777777777777666666654433
No 36
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.18 E-value=0.0028 Score=73.14 Aligned_cols=136 Identities=7% Similarity=0.047 Sum_probs=93.9
Q ss_pred hHHHHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCch
Q 000799 19 VLYRLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKW 97 (1279)
Q Consensus 19 ~~rklLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvV-TGk~LAEl~Re~Ygk~ 97 (1279)
+.|..++++| -+|.+||--.=.+-+. =..||+.=.|-+++++++-.++=.....+|-. .-++..+.++.-.|++
T Consensus 5 ~~~~~f~~ig--~~vGAGfAsGqEi~QF---F~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~ 79 (349)
T COG3949 5 FMRWAFAFIG--TVVGAGFASGQEIMQF---FGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHH--HhhcccccchHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHH
Confidence 3455666666 5555555433344333 34688888888888888888777777777665 4566788888888887
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 000799 98 TCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLL 162 (1279)
Q Consensus 98 ~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~l 162 (1279)
+..+.=+++.+..+.+.+-+..|++..++-.+|+|.|+|.+++.....+.+++++ .++++.+
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~---vegi~tv 141 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGR---VEGIITV 141 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhc---ccceeee
Confidence 7776656666666666667777888888889999999997766666666666543 3454433
No 37
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=98.16 E-value=0.0021 Score=76.88 Aligned_cols=227 Identities=15% Similarity=0.195 Sum_probs=125.5
Q ss_pred HHHHHHHhcCCcHHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhc
Q 000799 74 LSARIAVVTGKDLAQICGEEYDK-WTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAG 152 (1279)
Q Consensus 74 LSARLGvVTGk~LAEl~Re~Ygk-~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgs 152 (1279)
.+-||==.-.-+.++.+-+||.. ..+++..+.+.+....+.++++.|+++-+.+++|+|..+++++..+...+..++|-
T Consensus 94 ~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GG 173 (529)
T COG4147 94 IAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGG 173 (529)
T ss_pred HHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcc
Confidence 45555555566789999999874 56666666666666667788999999999999999999999998888887777764
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHh------hCCChh-hhccccccc-------cCC-------ChHHH-HHHHhcc
Q 000799 153 QLENYKAKLLWICTAGIILLSYVLGVLI------SQPEIP-LSVNGMLTK-------FSG-------DSAFS-IMSLLGA 210 (1279)
Q Consensus 153 Y~g~rklE~li~lLV~IM~LaFVi~l~i------s~Pd~~-eV~~GLVP~-------lp~-------~sl~~-aVALIGA 210 (1279)
-.+.-....+-.++ +.++|++..++ ..|..- .......|. -|+ +.+.. ..=++|+
T Consensus 174 M~atTW~Qi~qavl---Li~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GT 250 (529)
T COG4147 174 MKATTWVQIIQAVL---LIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGT 250 (529)
T ss_pred hhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHcc
Confidence 33332322222211 22222222211 122211 111111111 011 12222 2446788
Q ss_pred cchhHHH--HHhHHhhhhccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccc-------------
Q 000799 211 SMMPHNF--YLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVL------------- 275 (1279)
Q Consensus 211 TIMPhnl--yLHSaLVqsR~~~~d~~~~a~r~D~~~gil~il~gsfLINlaImivaAavfygtG~~V------------- 275 (1279)
.=+||.+ |..- ...+++|+....++. +++.|=+...++..+|..+-.++..-
T Consensus 251 AgLPHil~RFfTv-----------p~~k~AR~Sv~wA~~--fIg~fYi~~~~ig~~A~~~v~t~~~~~p~w~~~w~~~~D 317 (529)
T COG4147 251 AGLPHILMRFFTV-----------PDAKEARKSVFWATG--FIGIFYILTPIIGAGARLLVGTNPVGKPAWAAKWIKTGD 317 (529)
T ss_pred CCCCeEEEEEEec-----------CcHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhccCCCCCcchhhccccccc
Confidence 8899965 2211 012233443333332 23445555666666666654432211
Q ss_pred ------cCH-HHHHHHHHHhhc-cchHHHHHHHHHHHHHhHHHHHHHHH
Q 000799 276 ------LTF-QDAMSLMEQVFR-SPVVPFAFVLVLFFSNQIIAVNWNLS 316 (1279)
Q Consensus 276 ------~tl-~dAa~aLeplLG-G~~A~~LFAIGLLAAGqSSTITgTlA 316 (1279)
..- ++++-++.|.+| ++|...+.+.|.||+.+++.-.-++.
T Consensus 318 ~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~ 366 (529)
T COG4147 318 ANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLV 366 (529)
T ss_pred ccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHH
Confidence 111 455666777787 57776677777777766665444443
No 38
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.15 E-value=0.02 Score=69.61 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=29.9
Q ss_pred HHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 51 AHFGFDLVALMLVF-----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 51 A~fGY~LLWVLLLS-----tIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
|.+|+.++...+++ .+.++.+.||++...-.+| +...-.++-+|+++.++
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 46677765444443 3346666677665432234 66677788888876654
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.14 E-value=0.044 Score=65.31 Aligned_cols=68 Identities=7% Similarity=0.034 Sum_probs=36.8
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVF----NFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 LGPGfLvAaA-yIDPGnIaT~lQAGA~fGY~LLWVLLLS----tIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+|=|-++..| ++.||.... .+|. ..+|..+++ .++++.+-||+.++-. +| +...-.++.+|+.++++
T Consensus 19 i~vg~~IG~Gif~~~g~~~~--~aG~----~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G-g~y~y~~~~~G~~~gf~ 90 (457)
T PRK10580 19 MALGSAIGTGLFYGSADAIK--MAGP----SVLLAYIIGGVAAYIIMRALGEMSVHNPA-AS-SFSRYAQENLGPLAGYI 90 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhCh----HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHcCcHHHHH
Confidence 4555554443 466666544 2343 223333333 4445556777766543 22 55667788899877655
Q ss_pred H
Q 000799 102 I 102 (1279)
Q Consensus 102 L 102 (1279)
.
T Consensus 91 ~ 91 (457)
T PRK10580 91 T 91 (457)
T ss_pred H
Confidence 3
No 40
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.14 E-value=0.043 Score=65.11 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=38.0
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000799 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 27 LGPGfLvAaA-yIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~L 102 (1279)
++=|-++..| ++.||......-.++-. ..+...++..++++.+-||+.++-. +| +..+-.++.+|+++.++.
T Consensus 22 i~ig~~IGsGif~~~g~~~~~~G~~~~i--~~~i~~v~~~~~a~~~aEl~s~~P~-~G-g~~~~~~~~~g~~~gf~~ 94 (452)
T TIGR01773 22 LSIAGVIGAGLFVGSGSAIASAGPAALL--AYLLAGLLVVFIMRMLGEMAVANPD-TG-SFSTYADDAIGRWAGFTI 94 (452)
T ss_pred HHHhhhhhchHHHhhHHHHHhcCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 4444444443 45666555432111111 1222233444566666777766543 22 567788888999876654
No 41
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.11 E-value=0.012 Score=69.60 Aligned_cols=71 Identities=13% Similarity=0.023 Sum_probs=47.3
Q ss_pred HhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHH
Q 000799 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGV 104 (1279)
Q Consensus 33 vAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI 104 (1279)
+=.-++|.||+..-..-|.+.|-...+.++-..+-++.+=-++.---..+| +-.+.+.+++||+...++..
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~av~~~g-G~~~~l~~~~g~~f~~lf~~ 74 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLIALALVG-GGYDSLSARIGKVFGILFTV 74 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHheeeecC-CCHHHHHHHhChHHHHHHHH
Confidence 334578999999999989888877666665555555544444333233355 55667778899988876633
No 42
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=98.11 E-value=0.047 Score=64.50 Aligned_cols=38 Identities=13% Similarity=0.182 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH
Q 000799 63 VFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 63 LStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~L 102 (1279)
+..++++.+-|++.++-. +| +...-.++.+|+.++++.
T Consensus 52 ~~~~~a~~~aEl~s~~P~-~G-g~y~~~~~~~G~~~gf~~ 89 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPT-AG-GGYGFARRAFGPWGGFLA 89 (442)
T ss_pred HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHHhCcHHHHHH
Confidence 344566778889988764 23 556677888999776654
No 43
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.09 E-value=0.049 Score=64.16 Aligned_cols=58 Identities=10% Similarity=-0.005 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 000799 55 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 112 (1279)
Q Consensus 55 Y~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIa 112 (1279)
++-+.++++++++..++--+.++.|..||.+-.-..|..||++...+..++-.+..++
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~ig 86 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVG 86 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHH
Confidence 5677888999999999999999999999999999999999987766554443344433
No 44
>PRK10746 putative transport protein YifK; Provisional
Probab=98.08 E-value=0.049 Score=65.28 Aligned_cols=38 Identities=8% Similarity=-0.093 Sum_probs=22.9
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
.+++.. |.+.+..++.+.++.+.+++..++.+++..++
T Consensus 273 ~~~~~~-g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l 310 (461)
T PRK10746 273 LTFAKI-GITAAAGIINFVVLTAALSGCNSGMYSCGRML 310 (461)
T ss_pred HHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344543 54556566666666677777777777654443
No 45
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.05 E-value=0.0071 Score=71.97 Aligned_cols=74 Identities=14% Similarity=0.196 Sum_probs=53.2
Q ss_pred cccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 000799 38 VDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVIL 112 (1279)
Q Consensus 38 IDPGnIaT~lQAGA~fG---Y~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIa 112 (1279)
+...++.+..... .+| ++-++.+++++++..++--+.++.|.-||.+-.-..|..||.+...+..++-.+..++
T Consensus 28 ~~v~~~~~Ga~l~-~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~ig 104 (442)
T TIGR00800 28 FNIATWAIGALGL-PLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIG 104 (442)
T ss_pred hhHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 3444455444433 233 4567788899999999999999999999999999999999987766554444344443
No 46
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=98.00 E-value=0.032 Score=66.48 Aligned_cols=156 Identities=15% Similarity=0.112 Sum_probs=86.8
Q ss_pred hhhHHHHHhhhccccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC---cHHHHHHhhcCchhHHH
Q 000799 26 AVLPVLLISIGYVDPGKWAVIIEGGAHFGFD-LVALMLVFNFAAIFCQYLSARIAVVTGK---DLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 26 ~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~-LLWVLLLStIma~llQeLSARLGvVTGk---~LAEl~Re~Ygk~~~~~ 101 (1279)
.+|=-++++-..+|+|=+.-=.+++ ..||- .+-+++++-++.+..+++-.|.-.-+++ +..+..++++||+++++
T Consensus 11 ~~~~vl~l~gT~IGAGvL~lP~a~~-~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~l 89 (415)
T COG0814 11 DLGGVLILAGTAIGAGVLFLPVAFG-GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGIL 89 (415)
T ss_pred hHHHHHHHHccccccchhhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHH
Confidence 3455556666688988887777666 33333 3333555666777777777777666544 78999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhhC---ChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Q 000799 102 IGVQTELSVILLDLTMVLGIAHGL----NLLMG---VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSY 174 (1279)
Q Consensus 102 LwI~aeLAiIaaDIaEVIGiAIAL----nLLfG---IPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaF 174 (1279)
..+...+...+...+=+++.+--+ .-.++ .+..+++++.++....+.+.++ ....|... +++..++++|
T Consensus 90 i~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~-~~~lk~ts---~l~~~~v~~~ 165 (415)
T COG0814 90 IGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT-LAVLKITS---LLVFGKVIYL 165 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch-hHHHHHHH---HHHHHHHHHH
Confidence 766655554443332222221111 11122 4555555444444444555543 23333333 3344455555
Q ss_pred HHHHHhhCCChh
Q 000799 175 VLGVLISQPEIP 186 (1279)
Q Consensus 175 Vi~l~is~Pd~~ 186 (1279)
++..+.--|.|.
T Consensus 166 ~~l~~~~~~~~~ 177 (415)
T COG0814 166 VLLVVYLIPHWN 177 (415)
T ss_pred HHHHHHHhcccC
Confidence 554444456554
No 47
>PRK11021 putative transporter; Provisional
Probab=97.99 E-value=0.072 Score=62.45 Aligned_cols=37 Identities=8% Similarity=0.051 Sum_probs=23.3
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000799 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQV 319 (1279)
Q Consensus 282 a~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~ 319 (1279)
..++++.+| +++..++.+..+.+.+++..+..++...
T Consensus 249 ~~~~~~~~G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR 285 (410)
T PRK11021 249 PGIFVQLFG-GYALWVICVIGYLACFASVNIYTQSFAR 285 (410)
T ss_pred HHHHHHHhC-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667776 5566677777777777776665555433
No 48
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.94 E-value=0.042 Score=66.04 Aligned_cols=338 Identities=11% Similarity=0.051 Sum_probs=158.1
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 109 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLA 109 (1279)
|+.+=+-+.|+||++==..-|.+.|-+.+|.++-..+-++.+=-++.=--..+|.++.+. -++-||+.+.++.+.+-++
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~~~~~~~~l-~~~v~~~f~~if~~~i~l~ 87 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAKSGGGIEDL-ASRVGPKFALIFTILIYLS 87 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-hcccCcHHHHHHHHHHHHH
Confidence 445556689999999999999999999999888888777777666543333345555544 4567888777766554433
Q ss_pred HHHH-HHHH--HHHHHHHHHHhhC----ChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q 000799 110 VILL-DLTM--VLGIAHGLNLLMG----VELSTCVFLAAADAILFPFFAGQLENYKAKLLWI-CTAGIILLSYVLGVLIS 181 (1279)
Q Consensus 110 iIaa-DIaE--VIGiAIALnLLfG----IPL~~gVLITav~t~LLL~lgsY~g~rklE~li~-lLV~IM~LaFVi~l~is 181 (1279)
+--. .+.= ...-.+++.-+++ +++++-.++..+.++.+.+ ...+..+++-++.. +++.++++.++. .+.
T Consensus 88 IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~-~p~kivd~iGk~LTP~LL~~l~ilii~--~i~ 164 (427)
T PF05525_consen 88 IGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSL-NPSKIVDRIGKFLTPILLILLAILIIK--GIF 164 (427)
T ss_pred HHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3111 1110 1111222333444 3444444443444433322 22233455544433 222222222222 223
Q ss_pred CCChhhh-ccccccccCC-C---hHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhhhhHHHHHHHHHHHHHHHH
Q 000799 182 QPEIPLS-VNGMLTKFSG-D---SAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGALCHDHFFAILCIFSGIYMV 256 (1279)
Q Consensus 182 ~Pd~~eV-~~GLVP~lp~-~---sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~~a~r~D~~~gil~il~gsfLI 256 (1279)
+|.-... ..+-...-|. . .-|+.+=.+++.+-.-. ..+ ++-+++.++ +++..+.+..+-.....+.++|
T Consensus 165 ~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~i-Ii~-~i~~~g~~~----~k~~~~~~~~ag~ia~~lL~~I 238 (427)
T PF05525_consen 165 SPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGII-IIN-AIRQKGYKD----KKEIKKYTIKAGLIAGILLALI 238 (427)
T ss_pred cCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHH-HHH-HHHHhCCCC----HHHHHHHHHHHHHHHHHHHHHH
Confidence 4432110 0000000010 0 11222222222211110 111 111111111 1122233332221112233455
Q ss_pred HHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhhCCCcCCchHH
Q 000799 257 NYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLS-GQVVLQDFLRLDIPGWLHH 335 (1279)
Q Consensus 257 NlaImivaAavfygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlA-Gq~VmeGFL~l~i~~w~rr 335 (1279)
-..+.-++|..-..-+...+..+-....-+..+| +.+.+++++..+.|.+++++.-+-+ +++.-+-+ + +-.++
T Consensus 239 Y~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G-~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~-~----kisY~ 312 (427)
T PF05525_consen 239 YGGLAYLGATSSGSFPDDINGAELLSQIANHLFG-SAGQILLGIIVFLACLTTAIGLISACAEYFSELF-P----KISYK 312 (427)
T ss_pred HHHHHHHccCCcccccCCCCHHHHHHHHHHHHcC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c----ccChH
Confidence 5566666654321101112222222334466676 7899999999999999998865544 34444432 2 22233
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 000799 336 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQ 388 (1279)
Q Consensus 336 litrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~ 388 (1279)
....++.+ .+.+++- .| +.+++.++-=+..++=|.+++.++.-.-+|.
T Consensus 313 ~~v~i~~i-~S~~ian-~G---l~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~ 360 (427)
T PF05525_consen 313 VWVIIFTI-FSFIIAN-LG---LDQIIKISVPILMFIYPVAIVLILLNLFDKF 360 (427)
T ss_pred HHHHHHHH-HHHHHHH-hC---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 22222222 3333232 34 5667777766677778888776664444443
No 49
>TIGR00909 2A0306 amino acid transporter.
Probab=97.93 E-value=0.07 Score=62.54 Aligned_cols=40 Identities=10% Similarity=-0.055 Sum_probs=27.4
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
.+.++. +++++..++.++++.+.+++..+..++...++..
T Consensus 268 ~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~ 307 (429)
T TIGR00909 268 LVGYDL-GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFA 307 (429)
T ss_pred HHHHHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344554 4578888888888888888888777765544433
No 50
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.92 E-value=0.014 Score=69.77 Aligned_cols=72 Identities=13% Similarity=0.097 Sum_probs=41.7
Q ss_pred HHHHhhh--ccccchH-----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC-chhHHH
Q 000799 30 VLLISIG--YVDPGKW-----AVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD-KWTCVF 101 (1279)
Q Consensus 30 GfLvAaA--yIDPGnI-----aT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Yg-k~~~~~ 101 (1279)
||++|++ .+|-||+ .++...|+.|=---+-.+++.-+..++.... +|--++++..+..|+.-+ |++.++
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~---iGr~~~~~~~~a~~~l~~~~~~~~~ 89 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFA---IGRRGRKNAVGAFRKLAPKKKWEWI 89 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHH---hhhhcCCChhHHHHHhccCccchhh
Confidence 4454443 6999997 4566666665433333333333334444444 555678888888887665 666665
Q ss_pred HHH
Q 000799 102 IGV 104 (1279)
Q Consensus 102 LwI 104 (1279)
-|+
T Consensus 90 G~~ 92 (439)
T COG0733 90 GWF 92 (439)
T ss_pred hhH
Confidence 554
No 51
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.92 E-value=0.03 Score=66.89 Aligned_cols=37 Identities=3% Similarity=0.101 Sum_probs=23.3
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000799 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQ 318 (1279)
Q Consensus 282 a~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq 318 (1279)
.+.+...+|.+++..++.+.++.+.+++.++..++..
T Consensus 292 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 328 (482)
T TIGR00907 292 AQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANS 328 (482)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666675466666666666676777776666543
No 52
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.91 E-value=0.021 Score=68.51 Aligned_cols=44 Identities=9% Similarity=0.080 Sum_probs=35.0
Q ss_pred HHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000799 283 SLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 283 ~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
.+++..+| .|..++.++.++.-+++|.++..+-++...+-+++.
T Consensus 324 ~af~~~~g-~~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~ 367 (425)
T TIGR00835 324 QALSYGLG-SFGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGN 367 (425)
T ss_pred HHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45777776 688899999999999999999988777766555453
No 53
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=97.87 E-value=0.13 Score=61.52 Aligned_cols=34 Identities=21% Similarity=0.132 Sum_probs=23.5
Q ss_pred hhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 288 VFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 288 lLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
.+|.++...++.++++.+.+++..+..++...++
T Consensus 283 ~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l 316 (478)
T TIGR00913 283 NHGIKVLPHIFNAVILISVLSAANSSLYASSRTL 316 (478)
T ss_pred HcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4565677777777777787888777776654443
No 54
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=97.84 E-value=0.14 Score=60.87 Aligned_cols=38 Identities=5% Similarity=-0.104 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 62 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 62 LLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+++.++++.+-||+.++=. +| +.-.-.++.||+.++++
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf~ 88 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGYQ 88 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHHH
Confidence 4556667777888877642 33 56666888899877653
No 55
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.82 E-value=0.002 Score=75.90 Aligned_cols=77 Identities=13% Similarity=0.108 Sum_probs=51.1
Q ss_pred hhccccchHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHHH
Q 000799 35 IGYVDPGKWAVIIEGGAHFG---FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSVI 111 (1279)
Q Consensus 35 aAyIDPGnIaT~lQAGA~fG---Y~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAiI 111 (1279)
.+-+-..++.+.... ..+| ++-+..+++++++..++-.+.+++|.-||.+-.-..|..||.+.+.+..++..+..+
T Consensus 20 ~~~~~~~~~~~G~~~-~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l~~~l~~i~~i 98 (440)
T PF02133_consen 20 GANISIATFVTGALG-VALGLSFWQAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKLPSLLRAISAI 98 (440)
T ss_dssp HHH-SCHHH-HHHHH-HCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HccCchHHHHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHHHHHHHHHHHH
Confidence 334455555555544 4555 346678889999999999999999999999999999999998776655444334444
Q ss_pred H
Q 000799 112 L 112 (1279)
Q Consensus 112 a 112 (1279)
+
T Consensus 99 g 99 (440)
T PF02133_consen 99 G 99 (440)
T ss_dssp H
T ss_pred H
Confidence 4
No 56
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=97.76 E-value=0.21 Score=60.38 Aligned_cols=36 Identities=14% Similarity=0.085 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 64 FNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 64 StIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+.+.++.+-||+.++-. +| +.-.-.++.||+.+.++
T Consensus 90 ~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 90 SIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 34455566666666532 23 45666777889877654
No 57
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=97.75 E-value=0.2 Score=60.05 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=29.0
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVV 320 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~V 320 (1279)
...+++..+| +++..++.++++.+.+++..+.++++..+
T Consensus 266 ~~~~~~~~~g-~~~~~~i~~~~~is~~~~~~~~~~~~sR~ 304 (468)
T TIGR03810 266 MAYVLEHMVG-TWGAVLINIGLIISILGAWLSWTLLPAEI 304 (468)
T ss_pred HHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667665 78888898888888888888877775443
No 58
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=97.74 E-value=0.21 Score=59.91 Aligned_cols=69 Identities=13% Similarity=0.131 Sum_probs=36.5
Q ss_pred hhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 27 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN-----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLSt-----Ima~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
.+=.++..++-++-.++.+. |.+|...+...+++. +.++.+-||+.++=. .| +...-.|+.+|+.+.+.
T Consensus 6 ~~l~~~~~~~v~~~~~~~~~----a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 6 VTLAIMNITAVVSLRGLPAE----AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHHHHHHHHhhcchHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 33444444555555565444 455565543333333 344455666665432 22 46667788888876543
No 59
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.73 E-value=0.15 Score=60.19 Aligned_cols=122 Identities=13% Similarity=0.230 Sum_probs=74.7
Q ss_pred HHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHhcC----CcHHHHHHhhcCc-hhHHH
Q 000799 30 VLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAA---IFCQYLSARIAVVTG----KDLAQICGEEYDK-WTCVF 101 (1279)
Q Consensus 30 GfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma---~llQeLSARLGvVTG----k~LAEl~Re~Ygk-~~~~~ 101 (1279)
++..++.|+.++..... -||.|.|.|-|++|-..=+- +.+-.++-|+..... .++-|.+|.||-. ...|+
T Consensus 47 Amt~~aTYisaSSFigG--pgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~l 124 (473)
T COG4145 47 AMTFTATYISASSFIGG--PGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWL 124 (473)
T ss_pred hhHHHHHHHHHhhhcCC--CcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHH
Confidence 34445556665555543 36788888999544321111 111122223322222 2467778888754 33344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc
Q 000799 102 IGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQ 153 (1279)
Q Consensus 102 LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY 153 (1279)
.-+...+..+.....+++|.|=-++...|+|...|.+++++.+.+..++|.+
T Consensus 125 as~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 125 ASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcce
Confidence 4444444455555677999998888888999999999999998888887654
No 60
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.63 E-value=0.26 Score=59.66 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=57.3
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHH
Q 000799 29 PVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTEL 108 (1279)
Q Consensus 29 PGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeL 108 (1279)
=|+..=+-+.|+||++-=..-|.+.|-+..+.++-.++-++.+=-++.=-...+|-++.+. -++.+|+...++.+.+-+
T Consensus 13 iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l-~~rv~~~f~~~f~~~i~l 91 (439)
T PRK15433 13 LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSL-STPIGKVAGVLLATVCYL 91 (439)
T ss_pred HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH-hhhcchHHHHHHHHHHHH
Confidence 3666667799999999999999999988888888887777777666555455566455444 456788777666544433
Q ss_pred H
Q 000799 109 S 109 (1279)
Q Consensus 109 A 109 (1279)
+
T Consensus 92 ~ 92 (439)
T PRK15433 92 A 92 (439)
T ss_pred H
Confidence 3
No 61
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=97.54 E-value=0.16 Score=61.29 Aligned_cols=275 Identities=15% Similarity=0.125 Sum_probs=132.3
Q ss_pred HHhh-hccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhh-----cCc---------
Q 000799 32 LISI-GYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEE-----YDK--------- 96 (1279)
Q Consensus 32 LvAa-AyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~-----Ygk--------- 96 (1279)
.+++ +-+|.||++--..|=+-=|-.-++.+.+..+++....+.=.- |++.+|++ |-.
T Consensus 70 ~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~--------La~~Yr~kd~~G~~~GGP~yYi~kG 141 (452)
T COG1115 70 MTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAEST--------LAQKYRVKDKDGEYRGGPAYYIEKG 141 (452)
T ss_pred HHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHH--------HHhheeEeCCCCCCcCChHHHHHhh
Confidence 3344 469999998877776666776555566666666655554443 44444432 111
Q ss_pred -hhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 000799 97 -WTCVFIGVQTELSVIL-----LDLTMVLGIAHGLNLLMGVELS-TCVFLAAADAILFPFFAGQLENYKAKLLWICTAGI 169 (1279)
Q Consensus 97 -~~~~~LwI~aeLAiIa-----aDIaEVIGiAIALnLLfGIPL~-~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~I 169 (1279)
..+|+-.+++ +++++ .+.-+.-.++-+++--||+|.+ .|+.++++..+++ + .|.+++-++...++=+
T Consensus 142 l~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI--~---GGi~rIa~v~~~vVPf 215 (452)
T COG1115 142 LGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVI--F---GGIKRIAKVSSKVVPF 215 (452)
T ss_pred cCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH--H---cchHHHHHHHHHHHHH
Confidence 1223323333 22221 1222344567777888999754 5555555444332 3 3567777777777778
Q ss_pred HHHHHHHHHHhh-CCCh---hhhccccccccCCChHHHHHHHhcccchhHHHH-HhHHhhh-hcccccc-ccchhhh---
Q 000799 170 ILLSYVLGVLIS-QPEI---PLSVNGMLTKFSGDSAFSIMSLLGASMMPHNFY-LHSSIVR-RHQGQVN-ISKGALC--- 239 (1279)
Q Consensus 170 M~LaFVi~l~is-~Pd~---~eV~~GLVP~lp~~sl~~aVALIGATIMPhnly-LHSaLVq-sR~~~~d-~~~~a~r--- 239 (1279)
|.+.|++..+.. --+. +.++.-.+ +--.+.--.+=|.+|++++--..+ ..-++-. |-.-... ....+..
T Consensus 216 MA~~Yi~~~~~Ii~~n~~~iP~~i~~If-~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~h 294 (452)
T COG1115 216 MAILYVLVALVIIVLNISQIPAVIALIF-SSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDH 294 (452)
T ss_pred HHHHHHHHHHHHHHhhHhhhHHHHHHHH-HhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCC
Confidence 888888754431 1111 11111111 000011112346666655433221 1111110 0000000 0000000
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc----c-ccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHH
Q 000799 240 --HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTGL----V-LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 312 (1279)
Q Consensus 240 --~D~~~gil~il~gsfLINlaImivaAavfygtG~----~-V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTIT 312 (1279)
+.-++.+ ++.|+-++.|-.+.|.++--+|. . +...+=.-.+++..+| +|+.++.+++++.-+++|.+.
T Consensus 295 Pv~QGlv~~----~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g-~~G~~fv~i~l~lFafTTIlg 369 (452)
T COG1115 295 PVKQGLVQM----LGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLG-SWGSYFVAIALFLFAFTTILG 369 (452)
T ss_pred cHHHhHHHH----hhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcC-ccHHHHHHHHHHHHHHHHHHH
Confidence 1111211 22222222222222221111111 1 1222222345888887 799999999999999999999
Q ss_pred HHHHHHHHHHhhhC
Q 000799 313 WNLSGQVVLQDFLR 326 (1279)
Q Consensus 313 gTlAGq~VmeGFL~ 326 (1279)
+-+-++..++=..+
T Consensus 370 ~yyyge~~~~fl~~ 383 (452)
T COG1115 370 WYYYGEKNIEFLFG 383 (452)
T ss_pred HHHHHHHHHHHHhC
Confidence 98888777765543
No 62
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.52 E-value=0.082 Score=63.71 Aligned_cols=111 Identities=8% Similarity=0.059 Sum_probs=66.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 52 HFGFDLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFI-GVQTELSVILLDLTMVLGIAHGLNLL 128 (1279)
Q Consensus 52 ~fGY~LLWVLLLStIma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~L-wI~aeLAiIaaDIaEVIGiAIALnLL 128 (1279)
..|-..+.+-+++-++.+++.+.-+-+-+. +-.+...-+++.+|++..++. |..- +.-+..-++|+.++++=++.-
T Consensus 43 ~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW-~~wv~v~~ae~tAi~~y~~~W 121 (462)
T COG1113 43 MAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYW-FFWVLVGIAELTAIGIYLQFW 121 (462)
T ss_pred hhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556666666666666665 244899999999999875442 2111 122223345666777767767
Q ss_pred h-CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 000799 129 M-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWI 164 (1279)
Q Consensus 129 f-GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~ 164 (1279)
| ++|.|+.+++..+....+=++. -+.+...|+.++
T Consensus 122 fP~vP~Wv~al~~~~l~~~~NL~s-Vk~FGE~EfWfA 157 (462)
T COG1113 122 FPDVPQWVFALAAVVLLLAVNLIS-VKVFGELEFWFA 157 (462)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 7 6799998877666554443332 234556676654
No 63
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=97.50 E-value=0.42 Score=57.15 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=22.6
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 289 FRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 289 LGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
+|++++..++.++++.+.+++..+..+++..++
T Consensus 260 ~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l 292 (446)
T PRK10197 260 LNIPHAKLIMDCVILLSVTSCLNSALYTASRML 292 (446)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777777777777777777776667654443
No 64
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=97.41 E-value=0.51 Score=56.07 Aligned_cols=38 Identities=11% Similarity=-0.096 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 62 LVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 62 LLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
++..+.++.+-|++.++=.. | +.-.-.++.+|+.+.++
T Consensus 54 v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 45566677778888776432 2 23334566788776544
No 65
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=97.35 E-value=0.54 Score=54.96 Aligned_cols=42 Identities=5% Similarity=0.032 Sum_probs=28.9
Q ss_pred HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000799 282 MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 282 a~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
...+.+..|+++...++.++++.+.+.+..+...+...++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~ 301 (426)
T PF13520_consen 260 FAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYA 301 (426)
T ss_dssp HHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccccccccccccccccccccccccchhhcchhhcccc
Confidence 333444445578889999999888888888877775444433
No 66
>PRK10655 potE putrescine transporter; Provisional
Probab=97.15 E-value=0.93 Score=53.71 Aligned_cols=34 Identities=9% Similarity=-0.052 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 66 FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 66 Ima~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
+.++.+-|++.++=. +| +...-.++.||+.+.++
T Consensus 53 ~~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 53 ALAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 335556666655422 23 45667778899876544
No 67
>PRK10836 lysine transporter; Provisional
Probab=97.08 E-value=1.2 Score=53.84 Aligned_cols=37 Identities=5% Similarity=-0.041 Sum_probs=22.9
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
++.+. |.+++..++.++++.+.+++.....+++..++
T Consensus 287 ~~~~~-g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l 323 (489)
T PRK10836 287 VFQHA-GLLSAAAVMNAVILTAVLSAGNSGMYASTRML 323 (489)
T ss_pred HHHHc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443 44556667777777777777777776654433
No 68
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.01 E-value=1.4 Score=53.21 Aligned_cols=76 Identities=13% Similarity=0.183 Sum_probs=57.3
Q ss_pred HHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHH
Q 000799 29 PVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQ 105 (1279)
Q Consensus 29 PGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~ 105 (1279)
=|++.=+-+.|+||++-=-..|...|....|.++-..+-++.+=-+..=-....|++.-+.- ++-+||...++.+.
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~-~~i~~~fg~~f~~~ 85 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLA-TRIGPWFGVLFAIA 85 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHh-hhccchHHHHHHHH
Confidence 46666677899999999999999999998888877777777666666666666788776655 45788777655433
No 69
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.97 E-value=0.19 Score=61.69 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=19.5
Q ss_pred cccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000799 389 IMGVHKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 389 IMGe~rnS~~lnILawli~llIi~LNIyfV 418 (1279)
.-|++..+++.+...+++++.+++.-+.+.
T Consensus 447 ~~gp~~lGk~s~p~~~i~v~w~lf~~vil~ 476 (550)
T KOG1289|consen 447 RPGPFNLGKFSKPIGIIAVLWVLFMIVILC 476 (550)
T ss_pred CCCCccccccccchHHHHHHHHHHHHHHHh
Confidence 447777777778877777665555544444
No 70
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=96.87 E-value=2.1 Score=53.20 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=26.3
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
++.. .|.+++..++.+|++.+.+++.++..++...++
T Consensus 304 a~~~-~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil 340 (557)
T TIGR00906 304 AFEY-VGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVI 340 (557)
T ss_pred HHHH-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 455788888899998888888887777654433
No 71
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=96.63 E-value=2 Score=49.56 Aligned_cols=42 Identities=17% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCchhHHHH
Q 000799 61 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 61 LLLStIma~llQeLSARLGvV-TGk~LAEl~Re~Ygk~~~~~L 102 (1279)
++++.+++++.-.+.++++.. -|+++.|..++.+||+..+++
T Consensus 40 ~ll~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~Gk~~g~~~ 82 (359)
T TIGR00912 40 IILGGLIIIFLLCLMIKIMSKFPEKNFSEILSKYLGKILGRLL 82 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhHHHHHHH
Confidence 344445555444455555433 478999999999999877653
No 72
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=96.61 E-value=2.3 Score=50.01 Aligned_cols=34 Identities=9% Similarity=-0.101 Sum_probs=23.0
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQ 318 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq 318 (1279)
.+....| .+...+..++.+.+.+++.++...+..
T Consensus 277 ~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~s 310 (466)
T COG0531 277 AALFGGG-NWGAIIIAILALLSLFGSLLAWILAVS 310 (466)
T ss_pred HHHHcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444333 577778888888888888777776643
No 73
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=96.56 E-value=0.53 Score=57.68 Aligned_cols=59 Identities=14% Similarity=-0.006 Sum_probs=34.9
Q ss_pred ccccchHHHHHHHHHHHh-HH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC
Q 000799 37 YVDPGKWAVIIEGGAHFG-FD-LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 95 (1279)
Q Consensus 37 yIDPGnIaT~lQAGA~fG-Y~-LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Yg 95 (1279)
.+|.||+-.--.--.++| -. |+--++...++++++-.+=.-+|-.++++..+..++--|
T Consensus 18 ~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p 78 (523)
T PF00209_consen 18 AVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCP 78 (523)
T ss_dssp HSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 589998876554433333 22 333344555566666666666777788888877654444
No 74
>PLN03074 auxin influx permease; Provisional
Probab=96.56 E-value=2.4 Score=51.79 Aligned_cols=62 Identities=10% Similarity=0.024 Sum_probs=31.7
Q ss_pred HHHhhhCCC-cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 320 VLQDFLRLD-IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 320 VmeGFL~l~-i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~L 383 (1279)
+.|..++.+ .+....|++.|.+.++.+.+++... +.+..++-+...+....+-|.+=+++++
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~~I--P~fg~llsLvGs~~~s~l~~i~P~l~~l 398 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAIIF--PFFGPINSAVGALLVSFTVYIIPSLAHM 398 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544332 1223345667777777777666532 2244455555555555554444445554
No 75
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=96.21 E-value=4.1 Score=48.63 Aligned_cols=69 Identities=14% Similarity=0.065 Sum_probs=36.7
Q ss_pred hhHHHHHhhh-ccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 27 VLPVLLISIG-YVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 27 LGPGfLvAaA-yIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
++=|-+++.| ++=||.++ ++|...=+..+-..+.+.++++.+.||+.++=. +| +...-.++ +|+.+.++
T Consensus 15 l~vg~~IGsGif~lp~~~a---~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g~~~gf~ 84 (435)
T PRK10435 15 VVAGNMMGSGIALLPANLA---SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-ISPAFGFQ 84 (435)
T ss_pred HHHhhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HCcHHHHH
Confidence 4444444444 34466543 234321111222234456777788888888754 44 55566666 77766544
No 76
>PRK15015 carbon starvation protein A; Provisional
Probab=96.13 E-value=6.4 Score=50.09 Aligned_cols=51 Identities=20% Similarity=0.202 Sum_probs=37.6
Q ss_pred HHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHH
Q 000799 50 GAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 50 GA~fGY~--LLWVLLLStIma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~ 101 (1279)
.++|||- +||+++ .+++.-.+|.+.+=..-+ -||++.|++|++.|+..+.+
T Consensus 108 Aa~~GwlP~~LWIl~-G~vf~GaVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~l 162 (701)
T PRK15015 108 AAQMGYLPGMIWLLA-GVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVI 162 (701)
T ss_pred HHHHcchHHHHHHHH-cceeechhhhhhheeeeecCCCccHHHHHHHHhhHHHHHH
Confidence 3489995 888765 455555677776655554 59999999999999977654
No 77
>PRK09928 choline transport protein BetT; Provisional
Probab=96.01 E-value=5.2 Score=51.13 Aligned_cols=86 Identities=24% Similarity=0.337 Sum_probs=43.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC------CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Q 000799 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFT 365 (1279)
Q Consensus 292 ~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l------~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~a 365 (1279)
|++.++. +..+...+...+|...++.+++..+--. +.++|. |++|.++..+-++.+. +.|. +..|-
T Consensus 406 P~~~i~~-~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~-RifW~v~ig~la~~LL-~~GG--L~aLQ--- 477 (679)
T PRK09928 406 PAFTFSA-SVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWL-RVFWSVAIGLLTLGML-MTNG--ISALQ--- 477 (679)
T ss_pred cHHHHHH-HHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcce-eeHHHHHHHHHHHHHH-HhcC--HHHHH---
Confidence 4444333 3333444566778888888888777432 333454 4555443332332222 3342 22111
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 000799 366 QVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 366 QVl~sL~LPFaLIPLL~LtN 385 (1279)
.+.....|||.++.++...+
T Consensus 478 t~sii~alPf~~I~ll~~~s 497 (679)
T PRK09928 478 NTTVIMGLPFSFVIFFVMAG 497 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 22233667888877665543
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.97 E-value=6.3 Score=48.67 Aligned_cols=64 Identities=11% Similarity=0.179 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHH-HHHHHHHHHHHHHHHHHH
Q 000799 57 LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFI-GVQTELSVILLDLTMVLG 120 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~L-wI~aeLAiIaaDIaEVIG 120 (1279)
-+-.+++++++.+++-.+.+|-|..+|-+....+|..||-+.+.+- .+=+.++++=+-++-.+|
T Consensus 76 allai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqty~G 140 (497)
T COG1953 76 ALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQTYAG 140 (497)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3445777888888888999999999999999999999986544332 222333333344444443
No 79
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=95.95 E-value=0.093 Score=62.78 Aligned_cols=29 Identities=10% Similarity=-0.036 Sum_probs=23.2
Q ss_pred hccchHHHHHHHHHHHHHhHHHHHHHHHH
Q 000799 289 FRSPVVPFAFVLVLFFSNQIIAVNWNLSG 317 (1279)
Q Consensus 289 LGG~~A~~LFAIGLLAAGqSSTITgTlAG 317 (1279)
.|+++...++.++++.+.+++.....+++
T Consensus 283 ~~~~~~~~i~~~~~l~s~~s~~~~~~~~~ 311 (478)
T PF00324_consen 283 SGGPWLAWIVNAGILISAFSSANASLYAA 311 (478)
T ss_pred cccccccceecccchhhhhhhhhhhhccc
Confidence 45578888888999999888888877764
No 80
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=95.86 E-value=6.2 Score=47.71 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 57 LVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
++...+...++++.+-||+.++=. +| +.-.-.++-+|+.+.++
T Consensus 53 ~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 53 WPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 333344455566667777777642 23 45556667778766544
No 81
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=95.72 E-value=7.3 Score=47.44 Aligned_cols=72 Identities=8% Similarity=-0.065 Sum_probs=37.4
Q ss_pred hhhHHHHHhhhccccchHHHHHH-HHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHH
Q 000799 26 AVLPVLLISIGYVDPGKWAVIIE-GGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCV 100 (1279)
Q Consensus 26 ~LGPGfLvAaAyIDPGnIaT~lQ-AGA~fGY~LLWVLLLSt----Ima~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~ 100 (1279)
+++=..+...+-++-+++..+.+ +|. -.++|.++.+. +.++.+-|++.++=-.+| +.-.-.++-+|+.+.+
T Consensus 11 ~~~l~~~~~~~vig~~~~~~~~~~~G~---~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf 86 (496)
T PRK15238 11 LIGLILMIFTSVFGFANSPRAFYLMGY---SAIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAF 86 (496)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHcCh---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHH
Confidence 33334444444455566654332 332 13445444443 344556666665432224 6777788888887765
Q ss_pred H
Q 000799 101 F 101 (1279)
Q Consensus 101 ~ 101 (1279)
+
T Consensus 87 ~ 87 (496)
T PRK15238 87 I 87 (496)
T ss_pred H
Confidence 4
No 82
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.68 E-value=0.66 Score=57.76 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=31.1
Q ss_pred HHHHhhccchHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000799 284 LMEQVFRSPVVPF---AFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 284 aLeplLGG~~A~~---LFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
.+.=..+..++++ ++.++++.+..++...+.+++..++-.+
T Consensus 307 pF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~am 350 (554)
T KOG1286|consen 307 PFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYAL 350 (554)
T ss_pred HHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHH
Confidence 3442334567788 9999999999999999999987665554
No 83
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=95.32 E-value=9.9 Score=46.44 Aligned_cols=64 Identities=11% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHhhhCCCcC-----CchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 320 VLQDFLRLDIP-----GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 320 VmeGFL~l~i~-----~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtN 385 (1279)
++|...+.+.+ ....|++.|...++++++++..+-. ...++.+...+....+.+.+-+++++.-
T Consensus 330 ~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~Pf--Fg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 330 VVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPF--FGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HHHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccc--cHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554433 2225677888777788777764322 3445656666666666666656666544
No 84
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=95.25 E-value=11 Score=46.97 Aligned_cols=273 Identities=11% Similarity=0.081 Sum_probs=123.9
Q ss_pred hhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cHHHHHHh-hcCchhHHHHH
Q 000799 27 VLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGK--DLAQICGE-EYDKWTCVFIG 103 (1279)
Q Consensus 27 LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk--~LAEl~Re-~Ygk~~~~~Lw 103 (1279)
+|.|++++.|. .+.++==+|+--+|-+.=++++.+ +.-+=||+.-+= ++|- +.+.-+-+ -+|--..|..|
T Consensus 60 IGTGLfvgsG~----~l~~aGP~g~li~y~i~G~~vy~v--m~sLGEma~~~P-~sGsF~~ya~rfvdpa~GFa~gWnYw 132 (541)
T COG0833 60 IGTGLFVGSGK----ALSQAGPAGLLIAYLIIGIMVYFV--MQSLGELAVFYP-VSGSFSTYATRFVDPAFGFALGWNYW 132 (541)
T ss_pred cccceeeecch----hhhccCcHHHHHHHHHHHHHHHHH--HHHHHHHHhhcC-CCCchhhhhhhhcCchHHHHHHHHHH
Confidence 77888766553 111111345566666655555543 344567888887 6772 22222211 11211223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh--CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 000799 104 VQTELSVILLDLTMVLGIAHGLNLLM--GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI- 180 (1279)
Q Consensus 104 I~aeLAiIaaDIaEVIGiAIALnLLf--GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~i- 180 (1279)
+.- +..++ .|++.+++-++.-+ .+|.++++.+..+..+++=+++- +++...|+.+..+=.++++.|++..++
T Consensus 133 ~~w-~v~~~---~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~V-k~fGE~Efw~s~iKV~~ii~Fii~gii~ 207 (541)
T COG0833 133 LNW-AVTLP---LELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGV-KGFGETEFWFSSIKVLTIIGFIILGIII 207 (541)
T ss_pred HHH-HHHhh---HHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcc-cccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 221 12222 35667777777666 34888887776666666655543 244556766544333444444443332
Q ss_pred ---hCCChhhhccccc--c-ccCCChHHHHHHHhcccchhHHHHHhHHhhh----hccccccccchhhhhHHHHHHHHHH
Q 000799 181 ---SQPEIPLSVNGML--T-KFSGDSAFSIMSLLGASMMPHNFYLHSSIVR----RHQGQVNISKGALCHDHFFAILCIF 250 (1279)
Q Consensus 181 ---s~Pd~~eV~~GLV--P-~lp~~sl~~aVALIGATIMPhnlyLHSaLVq----sR~~~~d~~~~a~r~D~~~gil~il 250 (1279)
..|+-+.+..-+. | .++++ ..|+++..+..---|...-++- |-+.+++.-.++++. .+.-++.
T Consensus 208 ~~Gg~~~~~~ig~~yw~~pg~F~~g----f~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~-vfwRIl~-- 280 (541)
T COG0833 208 ICGGGPTHGYIGFNYWHDPGAFAGG----FKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQ-VFWRILL-- 280 (541)
T ss_pred hcCCCCCCCCcceeeecCCCCCCcc----hHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHH-HHHHHHH--
Confidence 2233111110000 2 12233 3444444443322244433331 111111111223333 2322221
Q ss_pred HHHHHHHHHHHHHHHHhhccCCccccC-------HHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q 000799 251 SGIYMVNYVLMNSAANLFYSTGLVLLT-------FQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQD 323 (1279)
Q Consensus 251 ~gsfLINlaImivaAavfygtG~~V~t-------l~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeG 323 (1279)
-+++ .+++++..+=|.. ..+.+ ...-.-+++. .|-+.++-++=..+|.+.+|+.=.+.|++...+-.
T Consensus 281 --FYi~--si~~ig~lvPy~d-p~Ll~~~~~~~~~SPFvia~~~-~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~s 354 (541)
T COG0833 281 --FYIL--SIFVIGLLVPYND-PRLLGNSSSGVAASPFVIAIKN-AGIPVAASIMNAVILTSVLSAANSGLYASSRMLYS 354 (541)
T ss_pred --HHHH--HHHHheEEccCCC-cccccCCcCCccCCChhHhHHh-cCCccchHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 1222 2233333332221 11110 0011123443 35566777777778888888888888887665544
Q ss_pred h
Q 000799 324 F 324 (1279)
Q Consensus 324 F 324 (1279)
.
T Consensus 355 L 355 (541)
T COG0833 355 L 355 (541)
T ss_pred H
Confidence 4
No 85
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=95.09 E-value=1 Score=53.56 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHHHH
Q 000799 43 WAVIIEGGAHFGFD--LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFIG 103 (1279)
Q Consensus 43 IaT~lQAGA~fGY~--LLWVLLLStIma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~Lw 103 (1279)
+.--..| +.|||- +||+++=+ ++.-.+|.+.+=..-+ -||++.|+++++.||..+.++.
T Consensus 71 I~GPi~a-a~~GwlPa~lWI~~G~-if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf~ 133 (376)
T PF02554_consen 71 IVGPILA-AQFGWLPALLWIVFGC-IFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLFL 133 (376)
T ss_pred chHHHHH-HHhcchHHHHHHHHcc-HHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 4444555 999997 88876555 4455556665555444 5999999999999998776543
No 86
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=94.89 E-value=9.2 Score=43.77 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhhcCchhHHHHHHHH---HHHHHHH---HHHHHHHHHHHHHHhhCChh
Q 000799 61 MLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEEYDKWTCVFIGVQT---ELSVILL---DLTMVLGIAHGLNLLMGVEL 133 (1279)
Q Consensus 61 LLLStIma~llQeLSARLGvV-TGk~LAEl~Re~Ygk~~~~~LwI~a---eLAiIaa---DIaEVIGiAIALnLLfGIPL 133 (1279)
++++.++++++-.+..++.-- -|+++.|..++.+||+...++.+.. .+...+. ..++++.. .++-..|.
T Consensus 38 ~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~----~~lp~TP~ 113 (320)
T PF03845_consen 38 VLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT----YLLPETPI 113 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCcCCH
Confidence 566677777777777777765 8999999999999998876542221 2222222 22333322 22335688
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHH
Q 000799 134 STCVFLAAADAILFPFFAGQLENYKAKL 161 (1279)
Q Consensus 134 ~~gVLITav~t~LLL~lgsY~g~rklE~ 161 (1279)
++-.++..+.++... ++|.+.+-+
T Consensus 114 ~~i~~~~ll~~~y~a----~~G~e~i~R 137 (320)
T PF03845_consen 114 WVIILLFLLVAAYAA----RKGIEVIAR 137 (320)
T ss_pred HHHHHHHHHHHHHHH----hcCHHHHHH
Confidence 887766665554433 235555544
No 87
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=94.38 E-value=18 Score=44.85 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=45.3
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC--CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Q 000799 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL--DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 369 (1279)
Q Consensus 292 ~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l--~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~ 369 (1279)
|++. +..+..+...+...+|...++.+++..+-.. +.++...|+++.++..+-++.+...-|.+ ..|- +..
T Consensus 389 P~~~-i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~-~lq~-----~~i 461 (485)
T PF02028_consen 389 PLSK-ILSILFLILIFIFFVTSADSATYVLAMLSSKGDEEPPRWLRIFWGLIIGALAIVLLLIGGLD-ALQS-----ASI 461 (485)
T ss_dssp TTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSSS-HHHHHHHHHHHHHHHHHHHHHHSSH-HHHH-----HHH
T ss_pred hHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhCCHH-HHHH-----HHH
Confidence 4554 3344444444666677777777777766432 23344556666544333333333344443 2332 223
Q ss_pred HHHHHHHHHHHHHHHh
Q 000799 370 AIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 370 sL~LPFaLIPLL~LtN 385 (1279)
...+||+++.++....
T Consensus 462 i~~lP~~~v~~~~~~~ 477 (485)
T PF02028_consen 462 IGGLPFSFVMLLMCIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3567888877766544
No 88
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.19 E-value=21 Score=44.84 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=37.0
Q ss_pred HHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHH
Q 000799 48 EGGAHFGF--DLVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 48 QAGA~fGY--~LLWVLLLStIma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~ 101 (1279)
..+|+||| .+||+++ .++++-.+|.+-.=.--+ -||++.|+.+++.|+..+.+
T Consensus 75 vlAAq~G~Lp~~LWIl~-G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILL-GCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHH-hhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789997 5888765 555555566554433222 49999999999999976654
No 89
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.30 E-value=4 Score=51.87 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q 000799 278 FQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDF 324 (1279)
Q Consensus 278 l~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGF 324 (1279)
+++-++.+.+. ..-+++..+|+++++++|.+.+.+++..+++..
T Consensus 358 Lq~dy~v~~~i---sl~p~fi~iGi~sttlfss~s~liGasrvL~al 401 (945)
T KOG1288|consen 358 LQNDYDVMMHI---SLHPPFILIGILSTTLFSSMSGLIGASRVLEAL 401 (945)
T ss_pred hhhchhheeec---cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44445555554 234678889999999999999999998888776
No 90
>PTZ00206 amino acid transporter; Provisional
Probab=93.27 E-value=26 Score=42.88 Aligned_cols=42 Identities=7% Similarity=0.079 Sum_probs=23.4
Q ss_pred HHHHHHHhcC-CcHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 000799 74 LSARIAVVTG-KDLAQICGEEYDKWTCVFIGVQTELSVILLDL 115 (1279)
Q Consensus 74 LSARLGvVTG-k~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDI 115 (1279)
+-+|..-.++ ++..|+.+.-+||+..++.-+...+-.+++.+
T Consensus 110 lL~~~~~~~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv 152 (467)
T PTZ00206 110 ALGVAADKTNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACV 152 (467)
T ss_pred HHHHHhccCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 3344433343 46788888778988776654444333333333
No 91
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=93.23 E-value=1.3 Score=55.35 Aligned_cols=113 Identities=11% Similarity=0.184 Sum_probs=66.1
Q ss_pred hhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHhcCCcHHHHHHhhcCchhHHHHHHHHHHHH
Q 000799 35 IGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYL----SARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELSV 110 (1279)
Q Consensus 35 aAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeL----SARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~aeLAi 110 (1279)
+.+++.+++..-...|++||.+.+|+-+-..+...++-.. --|.++. ++-|-.+.+|++..+. ++.+..+-.
T Consensus 58 aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~-l~~l~f~l~ 133 (585)
T KOG2349|consen 58 ASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRY-LATLSFILM 133 (585)
T ss_pred hhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchh-hHHHHHHHH
Confidence 5678888888888899999999887755544433332221 1233443 3456677778876433 222222222
Q ss_pred HHHHHHHHH-HHHHHHHHhhCChhHHHHHHHHHHHHHHHHhh
Q 000799 111 ILLDLTMVL-GIAHGLNLLMGVELSTCVFLAAADAILFPFFA 151 (1279)
Q Consensus 111 IaaDIaEVI-GiAIALnLLfGIPL~~gVLITav~t~LLL~lg 151 (1279)
+..-+..++ --|+++|..+|+.++..++++.+.|.+...+|
T Consensus 134 ~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~G 175 (585)
T KOG2349|consen 134 IFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALG 175 (585)
T ss_pred HHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhc
Confidence 222222111 34678888899988877766666666555543
No 92
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=92.74 E-value=33 Score=42.88 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC--C---CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 000799 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR--L---DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 366 (1279)
Q Consensus 292 ~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~--l---~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQ 366 (1279)
|++.+ ..+..+...+...+|...++.+++..+-. . ..++...|+++.++..+-++.+. +.|.-...| .
T Consensus 402 Pl~~i-~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll-~~GGl~~lQ-----t 474 (504)
T PRK03356 402 PLSTA-TMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLL-ALGGLKPIQ-----T 474 (504)
T ss_pred cHHHH-HHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHH-HhcCHHHHH-----H
Confidence 44433 33333344456677777777777766632 1 12334455666443322222222 333211222 2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000799 367 VMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 367 Vl~sL~LPFaLIPLL~LtN 385 (1279)
+.....+||.++.++...+
T Consensus 475 ~sii~alPf~~i~~l~~~s 493 (504)
T PRK03356 475 AIIAGGCPLFFVNIMVTLS 493 (504)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2334668999888776655
No 93
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.50 E-value=52 Score=42.27 Aligned_cols=65 Identities=20% Similarity=0.346 Sum_probs=47.4
Q ss_pred hHHHHHhhhc-cccchHH-----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcC
Q 000799 28 LPVLLISIGY-VDPGKWA-----VIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYD 95 (1279)
Q Consensus 28 GPGfLvAaAy-IDPGnIa-----T~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Yg 95 (1279)
.=.+|-++|+ +|-||+- .+-..|..| |+--+++..++++++..|=.-+|-.|+++-....|+--|
T Consensus 41 ~efllS~ig~~vGlgNvwRFP~~~y~nGGgaF---LIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~P 111 (629)
T KOG3660|consen 41 IEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAF---LIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICP 111 (629)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhcCCchH---HHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHHhCh
Confidence 3445667776 9999987 333333333 555567777888888888888999999999999986544
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=89.26 E-value=71 Score=40.28 Aligned_cols=71 Identities=25% Similarity=0.319 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHHhhhC---CCcCCchHHHHHHH-HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 307 QIIAVNWNLSGQVVLQDFLR---LDIPGWLHHATIRI-ISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFR 382 (1279)
Q Consensus 307 qSSTITgTlAGq~VmeGFL~---l~i~~w~rrlitrl-IAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~ 382 (1279)
..=.+|..+++.+++...-- .+.++|.| .++.+ ++++++.+ ++.|. +..|- .+.....|||+++-++.
T Consensus 416 ~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r-~~W~v~~~~ia~~l--L~~gg--l~aLq---t~~ii~alPF~~vll~~ 487 (537)
T COG1292 416 AIFFVTSADSGSYVLAMISSRGGEDPPRWVR-VFWGVLIGLIAAVL--LLIGG--LEALQ---TAAIITALPFSLVLLVM 487 (537)
T ss_pred HHHHhhccchHHHHHHHHhccCCCCChHHHH-HHHHHHHHHHHHHH--HHhCC--HHHHH---HHHHHHHccHHHHHHHH
Confidence 34445667777777766532 23344444 44433 33444433 23342 21111 22233668998887765
Q ss_pred HHh
Q 000799 383 VAS 385 (1279)
Q Consensus 383 LtN 385 (1279)
+.+
T Consensus 488 ~~s 490 (537)
T COG1292 488 MFS 490 (537)
T ss_pred HHH
Confidence 544
No 95
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=87.42 E-value=1.1e+02 Score=40.40 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=16.4
Q ss_pred HHHHhcccchhHHHHHhHHhhh
Q 000799 204 IMSLLGASMMPHNFYLHSSIVR 225 (1279)
Q Consensus 204 aVALIGATIMPhnlyLHSaLVq 225 (1279)
..-++||.+.|-.-.+.+++++
T Consensus 132 ~ALLLGAILAPTDPVLAssV~k 153 (810)
T TIGR00844 132 ASLLMGACITATDPVLAQSVVS 153 (810)
T ss_pred HHHHHHhhhcCCcHHHHHHHHh
Confidence 4557899999887777777665
No 96
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=84.64 E-value=68 Score=39.80 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 000799 409 GMLGLKLIFMVEMIFGNS 426 (1279)
Q Consensus 409 lIi~LNIyfVi~~lfg~s 426 (1279)
+++..-..|+++++..+.
T Consensus 230 li~Ygi~RF~iEflR~d~ 247 (460)
T PRK13108 230 VAFYCAGRFCVELLRDDP 247 (460)
T ss_pred HHHHHHHHHHhhhhccCc
Confidence 344445677777776544
No 97
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=84.16 E-value=1.2e+02 Score=37.69 Aligned_cols=88 Identities=20% Similarity=0.140 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC--CC---cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 000799 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR--LD---IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 366 (1279)
Q Consensus 292 ~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~--l~---i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQ 366 (1279)
|++.+ ..+..+...+...+|...++.+++..+.. .+ -++...|+++.++..+-++.+. +.|. ++..|- .
T Consensus 353 P~~~i-~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll-~~gG-~l~~lQ---~ 426 (453)
T TIGR00842 353 PLGTI-TSALALIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLL-FSGG-SLAALQ---T 426 (453)
T ss_pred cHHHH-HHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHH-HhcC-cHHHHH---H
Confidence 44433 33444444466677777777777776622 22 1444455566443322222222 3342 122111 2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000799 367 VMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 367 Vl~sL~LPFaLIPLL~LtN 385 (1279)
+.....+||.++.++...+
T Consensus 427 ~~ii~alP~~~i~~l~~~s 445 (453)
T TIGR00842 427 TAIIAALPFSLVMLVVMAS 445 (453)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334668998887776554
No 98
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=82.34 E-value=18 Score=43.09 Aligned_cols=88 Identities=22% Similarity=0.306 Sum_probs=57.7
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHHHHHHHHHHhcC-chhHHHHH
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSG-AEGVYQLL 362 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~i~~w~rrlitrlIAIIPALiVal~~G-~~~~vqLL 362 (1279)
.++.++| ++...++=+.++...++++++..-++....++.+|+ |.|.-.++. +..+.++.+.+ .+++..
T Consensus 71 ~~~~v~~-~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali~-----i~~v~i~lfl~~vegi~t-- 140 (349)
T COG3949 71 ILKYVSG-PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALII-----ILLVLILLFLGRVEGIIT-- 140 (349)
T ss_pred HHHHHhh-HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHHH-----HHHHHHHHHHhcccceee--
Confidence 4677776 667778888899999999997777777677777664 566553322 22223334444 555443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 000799 363 IFTQVMVAIMLPSSVIPLFRVASS 386 (1279)
Q Consensus 363 I~aQVl~sL~LPFaLIPLL~LtNs 386 (1279)
++++++||.++.++..++.
T Consensus 141 -----vn~iI~P~LIi~l~~v~~~ 159 (349)
T COG3949 141 -----VNGIITPFLIIILVLVTLS 159 (349)
T ss_pred -----eheeHHHHHHHHHHHHHHH
Confidence 4577889988887665543
No 99
>PLN00151 potassium transporter; Provisional
Probab=81.35 E-value=67 Score=42.40 Aligned_cols=34 Identities=9% Similarity=-0.038 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHhHH--HHHHHHH--HHHHHHhhhC
Q 000799 293 VVPFAFVLVLFFSNQII--AVNWNLS--GQVVLQDFLR 326 (1279)
Q Consensus 293 ~A~~LFAIGLLAAGqSS--TITgTlA--Gq~VmeGFL~ 326 (1279)
+-..+|.++.+||-..| .|++++. .|.+.-|++.
T Consensus 417 ~~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~Lg~fP 454 (852)
T PLN00151 417 LFWPVFLIANLAALIASRAMTTATFSCIKQSMALGCFP 454 (852)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34567788888877666 5666654 5666666653
No 100
>PLN00150 potassium ion transporter family protein; Provisional
Probab=81.30 E-value=1.6e+02 Score=38.91 Aligned_cols=33 Identities=15% Similarity=-0.012 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhHH--HHHHHHH--HHHHHHhhhC
Q 000799 294 VPFAFVLVLFFSNQII--AVNWNLS--GQVVLQDFLR 326 (1279)
Q Consensus 294 A~~LFAIGLLAAGqSS--TITgTlA--Gq~VmeGFL~ 326 (1279)
-..+|.++.+|+-..| .|++++. .|.+--|++.
T Consensus 358 ~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 394 (779)
T PLN00150 358 YWPIFVLATCSAMIASQAMISATFSIVKQAMALGCFP 394 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456777777776665 5666654 5666666653
No 101
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=80.98 E-value=1.6e+02 Score=36.76 Aligned_cols=71 Identities=7% Similarity=0.100 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCCchHHHHHHHHHHHH
Q 000799 336 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHKISQYHEFLVLITFM 408 (1279)
Q Consensus 336 litrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IM-Ge~rnS~~lnILawli~l 408 (1279)
...|.+.++-+.++++. .+.+..++-+..++....|-++.=|++.+.-..... |.++-.++.|++..+..+
T Consensus 364 ~~~R~~lVllt~~iA~~--iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~ 435 (449)
T KOG1304|consen 364 YALRVFLVLLTFLIAVA--VPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGV 435 (449)
T ss_pred HHHHHHHHHHHHHHHHH--CCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHH
Confidence 45566666666666554 334555665666666666666666777665544443 566666666654443333
No 102
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=79.36 E-value=0.076 Score=61.25 Aligned_cols=51 Identities=10% Similarity=0.119 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000799 335 HATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 335 rlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR 387 (1279)
+...|++.++.+.+++.+. ++...++.+...+.+..+-|++=+++++...+
T Consensus 323 ~~~~~~~~~~~~~~iA~~v--p~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 323 RYLIRIILVLLSFLIAIFV--PNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred eeeeecchhhhhhhhhhhc--cchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 3444444445555555432 23556666666665555555554555554433
No 103
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=77.07 E-value=48 Score=39.22 Aligned_cols=17 Identities=24% Similarity=0.259 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhcC
Q 000799 338 IRIISIVPALYCVWTSG 354 (1279)
Q Consensus 338 trlIAIIPALiVal~~G 354 (1279)
+....++|.+.+..+..
T Consensus 131 ~~~~~~~pl~~~~~~~~ 147 (340)
T PF12794_consen 131 WLIWVLVPLLFISIFAE 147 (340)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33445567777665544
No 104
>PRK09950 putative transporter; Provisional
Probab=76.26 E-value=2.2e+02 Score=35.93 Aligned_cols=88 Identities=17% Similarity=0.102 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC-----CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Q 000799 292 PVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL-----DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQ 366 (1279)
Q Consensus 292 ~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l-----~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQ 366 (1279)
|++.+ ..+..+...+...+|...++.+++..+-.. +.++...|+++.++..+-++.+. +.|. ++..|- .
T Consensus 399 P~~~i-~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll-~~gG-~l~~lQ---~ 472 (506)
T PRK09950 399 PAGKL-FLAAYLGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSIL-FTGA-SLDTMK---T 472 (506)
T ss_pred cHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHH-HhCC-cHHHHH---H
Confidence 44433 333344444566677777777877766322 12334455666443322222222 3342 122111 2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 000799 367 VMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 367 Vl~sL~LPFaLIPLL~LtN 385 (1279)
+.....+||.++.++...+
T Consensus 473 ~~ii~alP~~~i~~l~~~s 491 (506)
T PRK09950 473 TVVLTALPFLVILLIKVYG 491 (506)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2333667888887766554
No 105
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=76.13 E-value=2.3e+02 Score=36.05 Aligned_cols=41 Identities=12% Similarity=0.095 Sum_probs=20.8
Q ss_pred HHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhh
Q 000799 285 MEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFL 325 (1279)
Q Consensus 285 LeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL 325 (1279)
+....+.++-..+++..+=+..+||.-+..+--.+..+|.+
T Consensus 167 i~~l~~~~~~~l~~g~~lt~l~~SS~A~i~i~~~l~~~gli 207 (533)
T COG1283 167 IAKLSDDPIVALLIGALLTALIQSSLAAIGILLSLTSQGLI 207 (533)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 44444444455555555555666665554443334444443
No 106
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=75.99 E-value=2e+02 Score=35.28 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=35.7
Q ss_pred hhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchh
Q 000799 26 AVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWT 98 (1279)
Q Consensus 26 ~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~ 98 (1279)
.+|-|++..- .+-.++|--+|.-++-.+.+.+...+.++.-+++.+-.. +.++..+..+|+..
T Consensus 19 i~GaGIl~~P--------~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~--ty~~l~~~~~g~~g 81 (411)
T KOG1305|consen 19 IMGAGILAMP--------YAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER--TYSSLGDLIFGKLG 81 (411)
T ss_pred hhccHHHHhH--------HHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC--CHHHHHHHHcCCCc
Confidence 4566665332 234556656666666666666666665555554444433 66666766677654
No 107
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=75.80 E-value=2.4e+02 Score=36.12 Aligned_cols=17 Identities=12% Similarity=0.040 Sum_probs=10.1
Q ss_pred HHHHHHHHHHhHHHHHH
Q 000799 297 AFVLVLFFSNQIIAVNW 313 (1279)
Q Consensus 297 LFAIGLLAAGqSSTITg 313 (1279)
.|..|.+++-..|..|+
T Consensus 293 aF~mG~La~Lv~sPCt~ 309 (569)
T COG4232 293 AFFMGALAGLVVSPCTA 309 (569)
T ss_pred HHHHHHHHHHhcCcCcc
Confidence 56666666666554443
No 108
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=75.56 E-value=2.4e+02 Score=36.33 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhhccCCccccCH-HHH---------HHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000799 253 IYMVNYVLMNSAANLFYSTGLVLLTF-QDA---------MSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQ 322 (1279)
Q Consensus 253 sfLINlaImivaAavfygtG~~V~tl-~dA---------a~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vme 322 (1279)
+.++++.++...|.+.|+.+...... ..+ .++++..-.+.+-.++|-+.|++.|+.|++.+. +.++.
T Consensus 374 sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~g~~---e~iit 450 (629)
T KOG3659|consen 374 SGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMFGGI---EAIIT 450 (629)
T ss_pred HHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhhhhH---HHHhc
Confidence 34667778888888877755433210 000 123333222234445677777777777777544 33454
Q ss_pred hhhCCCcCC--chHHHHHHHH-HHHHHHHHHH-hcCchhHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhccccc
Q 000799 323 DFLRLDIPG--WLHHATIRII-SIVPALYCVW-TSGAEGVYQLLIFTQVMVAIMLPSSVI--------PLFRVASSRQIM 390 (1279)
Q Consensus 323 GFL~l~i~~--w~rrlitrlI-AIIPALiVal-~~G~~~~vqLLI~aQVl~sL~LPFaLI--------PLL~LtNsR~IM 390 (1279)
++.+..... ..|.+++..+ +..+.+.+.. -.|......+++.--+..+++.+..+. -+=.|.+|-+.|
T Consensus 451 ~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~M 530 (629)
T KOG3659|consen 451 PLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQM 530 (629)
T ss_pred cccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHH
Confidence 443322111 1122223222 2222222111 111112233444333333333333322 223456666677
Q ss_pred cCCCchHHHHHH
Q 000799 391 GVHKISQYHEFL 402 (1279)
Q Consensus 391 Ge~rnS~~lnIL 402 (1279)
=.|++++++++.
T Consensus 531 lg~~P~~yw~v~ 542 (629)
T KOG3659|consen 531 LGFRPGWYWRVC 542 (629)
T ss_pred hCCCCchhHHHH
Confidence 778888877664
No 109
>PLN00148 potassium transporter; Provisional
Probab=75.41 E-value=2.9e+02 Score=36.77 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHhHH--HHHHHHH--HHHHHHhhhC
Q 000799 294 VPFAFVLVLFFSNQII--AVNWNLS--GQVVLQDFLR 326 (1279)
Q Consensus 294 A~~LFAIGLLAAGqSS--TITgTlA--Gq~VmeGFL~ 326 (1279)
-..+|.++.+|+-..| .|++++. .|.+--|++.
T Consensus 341 ~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fP 377 (785)
T PLN00148 341 FWPVFVIATLAAIVGSQAVITATFSIVKQCHALGCFP 377 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456777777776665 5666654 5666666653
No 110
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=72.90 E-value=2.7e+02 Score=35.41 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 359 YQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 359 vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LNIyfVi~~l 422 (1279)
...+.+.-.-.++.+|++++-++. . .++ -+.+.|++.+=.+..+++++++++++...+
T Consensus 326 ~g~~~l~~~gLG~~~Plll~~~~~--~--~~l--pk~g~wm~~~k~~~G~~ll~~~~~ll~~~~ 383 (571)
T PRK00293 326 LGGLTLYLLALGMGLPLILITTFG--N--KLL--PKSGPWMNQVKTAFGFVLLALPVFLLERVL 383 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--H--hhc--ccCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444556778888776653 2 233 367888888777777888888888776443
No 111
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=71.67 E-value=2.7e+02 Score=36.54 Aligned_cols=28 Identities=11% Similarity=0.174 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 000799 137 VFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 137 VLITav~t~LLL~lgsY~g~rklE~li~l 165 (1279)
+++++++ +++||..++.|-.|+.++++-
T Consensus 169 v~it~~I-Lv~LF~iQ~~GT~kvg~~FgP 196 (688)
T TIGR00794 169 VPISCII-LVLLFLIQRFGTAKVGFTFAP 196 (688)
T ss_pred hhHHHHH-HHHHHHHhccccHHHhhhhhh
Confidence 4444443 334445566788888777653
No 112
>PLN00149 potassium transporter; Provisional
Probab=68.98 E-value=3.9e+02 Score=35.62 Aligned_cols=33 Identities=9% Similarity=-0.069 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhHH--HHHHHHH--HHHHHHhhhC
Q 000799 294 VPFAFVLVLFFSNQII--AVNWNLS--GQVVLQDFLR 326 (1279)
Q Consensus 294 A~~LFAIGLLAAGqSS--TITgTlA--Gq~VmeGFL~ 326 (1279)
-..+|.++.+||-..| .|++++. -|.+.-|++.
T Consensus 345 ~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fP 381 (779)
T PLN00149 345 RWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFP 381 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3457777777776665 5666654 5666666653
No 113
>KOG2348 consensus Urea transporter [Amino acid transport and metabolism]
Probab=67.08 E-value=17 Score=44.68 Aligned_cols=102 Identities=11% Similarity=0.110 Sum_probs=51.6
Q ss_pred cccchHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHh--cCCcHHHHHHhhcCchhHHHHHHHHHHHHHHHH
Q 000799 38 VDPGKWAVIIEGGAHFGFD-LVALMLVFNFAAIFCQYLSARIAVV--TGKDLAQICGEEYDKWTCVFIGVQTELSVILLD 114 (1279)
Q Consensus 38 IDPGnIaT~lQAGA~fGY~-LLWVLLLStIma~llQeLSARLGvV--TGk~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaD 114 (1279)
.=|+.+.|+.+---+||-. -.|--.-+|+=-+++-.++..+--+ .-++..|+.|.|||+..-.++.+++...+|...
T Consensus 67 tW~sTlLtSa~~ayqyGV~G~~wYasga~vQIl~FtVlAie~Kr~APnAHT~~EiVkaR~G~~~H~vfL~yal~TNIlVt 146 (667)
T KOG2348|consen 67 TWASTLLTSAGKAYQYGVSGSFWYASGATVQILLFTVLAIEVKRKAPNAHTILEIVKARFGQASHGVFLFYALATNILVT 146 (667)
T ss_pred hhhHHHHhhccchhhhcccchhhhhccchhhhHHHHHHHHhhhhcCCCcchhhhhhHhhcCcccceEEEhhhhhhhHHHH
Confidence 3455666655554455532 4555444444444444444444332 467799999999998533222222222222211
Q ss_pred HHHHHHHHHHHHHhhCChhHHHHHH
Q 000799 115 LTMVLGIAHGLNLLMGVELSTCVFL 139 (1279)
Q Consensus 115 IaEVIGiAIALnLLfGIPL~~gVLI 139 (1279)
..-+.|....++.+.|.......++
T Consensus 147 aMLL~gGSavisalTGmn~vAa~FL 171 (667)
T KOG2348|consen 147 AMLLLGGSAVISALTGMNTVAACFL 171 (667)
T ss_pred HHHHhCchhhhhhhccchhhhhhhe
Confidence 1113344445666777665554433
No 114
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=66.54 E-value=3.5e+02 Score=35.79 Aligned_cols=19 Identities=21% Similarity=0.224 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000799 365 TQVMVAIMLPSSVIPLFRVA 384 (1279)
Q Consensus 365 aQVl~sL~LPFaLIPLL~Lt 384 (1279)
..++.+..| |.++|--++.
T Consensus 267 ~e~~ia~~l-Fll~P~~~~~ 285 (764)
T TIGR02865 267 YEALIATLL-FLLIPNKIYK 285 (764)
T ss_pred HHHHHHHHH-HHHhhHHHHH
Confidence 444444433 6667755443
No 115
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=64.02 E-value=4.1e+02 Score=33.99 Aligned_cols=104 Identities=16% Similarity=0.043 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCc----HHHHHH--hhcCchhHHHHHHHHHHHHH--HHHH-----HHHHHHHH
Q 000799 57 LVALMLVFNFAAIFCQYLSARIAVVTGKD----LAQICG--EEYDKWTCVFIGVQTELSVI--LLDL-----TMVLGIAH 123 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLSARLGvVTGk~----LAEl~R--e~Ygk~~~~~LwI~aeLAiI--aaDI-----aEVIGiAI 123 (1279)
.+|.+.+-..+||++--|-+-- .|++ |..+++ .+-+|+.++++.++..++.. ..|- --|+.+--
T Consensus 43 IfWtL~liv~iKYv~ivlradn---~GEGGi~aL~sL~~~~~~~~~~~~~~l~~l~l~G~al~~gDgviTPAISVlSAvE 119 (534)
T PF02705_consen 43 IFWTLTLIVTIKYVLIVLRADN---NGEGGIFALYSLIRRFLKSSKRRRWLLLILGLLGAALFYGDGVITPAISVLSAVE 119 (534)
T ss_pred HHHHHHHHHHHheEEEEEEeCC---CCChhHHHHHHHHHHhhccchhHHHHHHHHHHHHhhhhhcceeecchHHHHHHhh
Confidence 4677777777777665443321 2333 334444 22244454443333222221 1120 12334444
Q ss_pred HHHHhh-CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Q 000799 124 GLNLLM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC 165 (1279)
Q Consensus 124 ALnLLf-GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~l 165 (1279)
|+.... ++..+ -+++++++. ++||..+++|-.|+.+++.-
T Consensus 120 Gl~v~~p~~~~~-Vv~it~~IL-v~LF~iQ~~GT~~ig~~FgP 160 (534)
T PF02705_consen 120 GLEVATPSLEPY-VVPITIAIL-VGLFAIQRFGTAKIGKLFGP 160 (534)
T ss_pred hhhccCCCCcce-ehhHHHHHH-HHHHHHHhhhhhHHHHHHhH
Confidence 444333 22311 234444433 33444466788888777653
No 116
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=63.93 E-value=3.8e+02 Score=33.70 Aligned_cols=39 Identities=13% Similarity=-0.105 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHH
Q 000799 100 VFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFL 139 (1279)
Q Consensus 100 ~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLI 139 (1279)
..+|+.-.++.++.-+..+.-.-.... +.+=|.+++.+.
T Consensus 13 r~lw~a~~iS~lG~~~~~va~~wlv~~-lt~S~~~valv~ 51 (524)
T PF05977_consen 13 RRLWIAQLISNLGDWMQTVALAWLVTQ-LTGSPLMVALVQ 51 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHH
Confidence 346766667777766664332222222 345566665543
No 117
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=62.60 E-value=60 Score=35.77 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 357 GVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 357 ~~vqLLI~aQVl~sL~LPFaLIPLL~LtN 385 (1279)
+.+.++.+ ++.+++|||-.+-+.+-..
T Consensus 79 p~ialimi--~iAs~llP~PsLVIaYCl~ 105 (189)
T PF05313_consen 79 PLIALIMI--IIASLLLPFPSLVIAYCLS 105 (189)
T ss_pred cHHHHHHH--HHHHHHcCccHHHHHHHHH
Confidence 34444333 5668899996655554433
No 118
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=61.47 E-value=2.2e+02 Score=36.78 Aligned_cols=93 Identities=13% Similarity=0.111 Sum_probs=41.3
Q ss_pred hhCChhH-----HHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc---c
Q 000799 128 LMGVELS-----TCVFLAAADAILFPFFAGQLENYKA-----KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML---T 194 (1279)
Q Consensus 128 LfGIPL~-----~gVLITav~t~LLL~lgsY~g~rkl-----E~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLV---P 194 (1279)
+||+|.. ..|+...+.+|++-++.++ .+|. +.++.-++ .+++++.+.+++..|=..-+-+++- -
T Consensus 205 ~fGipv~~~~Y~~sViPiil~v~~~s~iEk~--l~K~iP~~l~~i~~P~l-tlli~~pl~l~viGPig~~i~~~l~~~i~ 281 (627)
T PRK09824 205 FLGIPVTLLNYSSSVIPIIFSAWLCSILERR--LNAWLPSAIKNFFTPLL-CLMVIVPLTFLLIGPLATWLSELLAAGYQ 281 (627)
T ss_pred ecceeeeecCCccchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4677643 2355555555555554332 3332 33333222 3455555666666775433333321 1
Q ss_pred ccCCChHHHHHHHhcccchhHHHH-HhHHh
Q 000799 195 KFSGDSAFSIMSLLGASMMPHNFY-LHSSI 223 (1279)
Q Consensus 195 ~lp~~sl~~aVALIGATIMPhnly-LHSaL 223 (1279)
.+-...-.++.+++|+.--|-.++ +|-++
T Consensus 282 ~l~~~~~~i~g~i~g~~~~~lV~~G~H~~l 311 (627)
T PRK09824 282 WLYQAVPAFAGAVMGAFWQVFVIFGLHWGL 311 (627)
T ss_pred HHHhhchHHHHHHHHHHHHHHHHhccchhh
Confidence 111111234456677654444334 55544
No 119
>PRK03612 spermidine synthase; Provisional
Probab=57.64 E-value=2.9e+02 Score=34.67 Aligned_cols=47 Identities=9% Similarity=0.067 Sum_probs=30.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHhh
Q 000799 47 IEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVV-TGKDLAQICGEE 93 (1279)
Q Consensus 47 lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvV-TGk~LAEl~Re~ 93 (1279)
+.+.+..+|.++|.=+++.+++--+...+.=+++. .|.++...+-.+
T Consensus 25 ~sg~~~L~yEv~~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~ 72 (521)
T PRK03612 25 VCAACGLVYELLLGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKY 72 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44677888999998888877766555555555443 455555444433
No 120
>COG1294 AppB Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
Probab=56.41 E-value=4.4e+02 Score=31.94 Aligned_cols=24 Identities=13% Similarity=0.037 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 000799 444 FAVFLITTFTSLCLMLWLATTPLR 467 (1279)
Q Consensus 444 ~~v~~~~~~~yl~f~lyL~~~pl~ 467 (1279)
.++++++.++|..+.-|+.....+
T Consensus 316 ~lv~lPivL~Y~~~~Y~vF~gk~~ 339 (346)
T COG1294 316 ALVFLPIVLAYTIWSYRVFRGKIT 339 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 334555666777777666655544
No 121
>PRK11469 hypothetical protein; Provisional
Probab=55.13 E-value=2.5e+02 Score=30.87 Aligned_cols=29 Identities=3% Similarity=0.178 Sum_probs=20.2
Q ss_pred hhCChhHHHHHHHHHHHHHHHHhhcchhH
Q 000799 128 LMGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 128 LfGIPL~~gVLITav~t~LLL~lgsY~g~ 156 (1279)
+.|.|.+..++++++.++++.+++-|.|.
T Consensus 128 ~~g~~~~~~~~~ig~~s~~~~~~G~~lG~ 156 (188)
T PRK11469 128 FLQVNIIATALAIGCATLIMSTLGMMVGR 156 (188)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778887777778888777766654443
No 122
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=55.04 E-value=6e+02 Score=33.12 Aligned_cols=19 Identities=5% Similarity=0.078 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000799 57 LVALMLVFNFAAIFCQYLS 75 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLS 75 (1279)
.+|.+.+-..++|++.-|-
T Consensus 56 IfWtL~livtiKYv~ivlr 74 (622)
T PRK10745 56 IFWLLILVVSIKYLTFVMR 74 (622)
T ss_pred HHHHHHHHHHHHhheEEEe
Confidence 4677777777888775443
No 123
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=54.23 E-value=81 Score=33.74 Aligned_cols=9 Identities=33% Similarity=0.567 Sum_probs=5.2
Q ss_pred HHHHhhCCh
Q 000799 124 GLNLLMGVE 132 (1279)
Q Consensus 124 ALnLLfGIP 132 (1279)
++.++||-.
T Consensus 116 ~fa~lfgg~ 124 (193)
T PF06738_consen 116 AFALLFGGS 124 (193)
T ss_pred HHHHHHCCC
Confidence 455567654
No 124
>PTZ00243 ABC transporter; Provisional
Probab=52.36 E-value=9.4e+02 Score=34.58 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=11.9
Q ss_pred HHHHHHHHhcCCcHHHHHHhh
Q 000799 73 YLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 73 eLSARLGvVTGk~LAEl~Re~ 93 (1279)
+++.|+|+-....|...+.++
T Consensus 307 ~~~~r~~~~~r~~L~~~if~K 327 (1560)
T PTZ00243 307 YISIRCGLQYRSALNALIFEK 327 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556676765555555555443
No 125
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=51.24 E-value=2e+02 Score=31.89 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=20.1
Q ss_pred hCChhHHHHHHHHHHHHHHHHhhcchhH
Q 000799 129 MGVELSTCVFLAAADAILFPFFAGQLEN 156 (1279)
Q Consensus 129 fGIPL~~gVLITav~t~LLL~lgsY~g~ 156 (1279)
.|.+.+..+++.++.++++.+.+-+.|.
T Consensus 152 ~g~~~~~~~~~igivs~i~~~~G~~lG~ 179 (206)
T TIGR02840 152 LGLNPLATSILVAVMSFIFVSLGLFLGK 179 (206)
T ss_pred hCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777788888888777655443
No 126
>PRK02983 lysS lysyl-tRNA synthetase; Provisional
Probab=49.99 E-value=3e+02 Score=37.91 Aligned_cols=51 Identities=12% Similarity=0.133 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 368 MVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMV 419 (1279)
Q Consensus 368 l~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LNIyfVi 419 (1279)
+..+++|.+++.+++++ .+.---.-+.+.+.+.+.|++.++++.+.+.++.
T Consensus 114 ~~~a~~~~~~~~~L~~~-R~~F~~~~~~~s~~~~~~~l~~~~~~~~~~~~~l 164 (1094)
T PRK02983 114 IIGFAVHVVAIVLLVLA-RREFPARVRRGALRKALAVLVGGLAVGILVGWGL 164 (1094)
T ss_pred HHHHHHHHHHHHHHHHH-HhhccCCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666554 3433222234667777778777777755444443
No 127
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=49.60 E-value=6.8e+02 Score=32.12 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=11.4
Q ss_pred HHHHHHHhcccchhHHHH
Q 000799 201 AFSIMSLLGASMMPHNFY 218 (1279)
Q Consensus 201 l~~aVALIGATIMPhnly 218 (1279)
+..+-|++-+.++|...+
T Consensus 193 ~~~~rg~~~~~~~~~~~~ 210 (679)
T TIGR02916 193 VWPARGLVAALVVPLIAV 210 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344567777777777443
No 128
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=48.70 E-value=5.8e+02 Score=31.28 Aligned_cols=31 Identities=3% Similarity=0.085 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCC
Q 000799 364 FTQVMVAIMLPSSVIPLFRVASSRQIMGVHK 394 (1279)
Q Consensus 364 ~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~r 394 (1279)
..+++.+.+--|++++++++..-+-++-+|.
T Consensus 238 ~~~~v~~ai~~F~vl~ii~~i~~E~~L~~Yv 268 (374)
T PF01528_consen 238 VSDMVFGAINVFAVLSIIYLIVIEVVLARYV 268 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666667788888888866555554443
No 129
>PRK10263 DNA translocase FtsK; Provisional
Probab=47.53 E-value=57 Score=44.98 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=5.1
Q ss_pred hhCChhHHHH
Q 000799 128 LMGVELSTCV 137 (1279)
Q Consensus 128 LfGIPL~~gV 137 (1279)
+||+.-|+..
T Consensus 78 LFGl~AYLLP 87 (1355)
T PRK10263 78 IFGVMAYTIP 87 (1355)
T ss_pred HHhHHHHHHH
Confidence 5566444443
No 130
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=44.25 E-value=8.3e+02 Score=31.63 Aligned_cols=10 Identities=30% Similarity=0.238 Sum_probs=5.3
Q ss_pred HHHHHHhccc
Q 000799 202 FSIMSLLGAS 211 (1279)
Q Consensus 202 ~~aVALIGAT 211 (1279)
.++.+++|+.
T Consensus 281 ~i~~~iig~l 290 (610)
T TIGR01995 281 WLAGALLAAL 290 (610)
T ss_pred HHHHHHHHHH
Confidence 3445566654
No 131
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=43.52 E-value=2.3e+02 Score=35.50 Aligned_cols=13 Identities=15% Similarity=0.325 Sum_probs=8.4
Q ss_pred cCCCCCCcccccc
Q 000799 472 RNNAPDWSWEFQR 484 (1279)
Q Consensus 472 ~~~~~~~~~~~~~ 484 (1279)
..|...|-|.+=.
T Consensus 482 ~~Edy~WwWrSF~ 494 (521)
T PF02990_consen 482 CAEDYRWWWRSFL 494 (521)
T ss_pred hccccceeeeeeh
Confidence 3556788887643
No 132
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=42.74 E-value=8.4e+02 Score=31.24 Aligned_cols=90 Identities=17% Similarity=0.263 Sum_probs=43.7
Q ss_pred HHHhhhhHHHHHhhhc------cccchHHHHHHHHH-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Q 000799 22 RLVPAVLPVLLISIGY------VDPGKWAVIIEGGA-----HFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQIC 90 (1279)
Q Consensus 22 klLa~LGPGfLvAaAy------IDPGnIaT~lQAGA-----~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~ 90 (1279)
-++..+-+|++.++=. .||-.-.+-..+.. .+|+.+ +.+++++.-++|.+++.+-+ ...+
T Consensus 53 GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~~---~~~~tllaGv~~i~~G~lRL------G~li 123 (554)
T COG0659 53 GLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLAL---AFLATLLAGVFQILLGLLRL------GRLI 123 (554)
T ss_pred HHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHh------hhhh
Confidence 3556666777655421 33333333333322 444443 35566777778877755433 1121
Q ss_pred HhhcCchhHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000799 91 GEEYDKWTCVFIGVQTELS--VILLDLTMVLGIAH 123 (1279)
Q Consensus 91 Re~Ygk~~~~~LwI~aeLA--iIaaDIaEVIGiAI 123 (1279)
+..|+.+ +.+++..++ ++..++.++.|...
T Consensus 124 -~fip~pV--l~Gf~~Giai~I~~~Ql~~~~G~~~ 155 (554)
T COG0659 124 -RFIPRPV--LIGFTAGIAILIILTQLPVLLGLAS 155 (554)
T ss_pred -hhccHHH--HHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1233322 344444444 45567777666543
No 133
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=41.98 E-value=3.8e+02 Score=34.25 Aligned_cols=44 Identities=16% Similarity=0.092 Sum_probs=35.1
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCC
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRL 327 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l 327 (1279)
.|.....+|+..++.++++=+.-|||+-|..+...+|..|++..
T Consensus 39 ~L~~~t~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl 82 (533)
T COG1283 39 ILARFTSNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSL 82 (533)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccch
Confidence 34444456778888888888889999999999988999998754
No 134
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=41.95 E-value=7.5e+02 Score=30.80 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=45.5
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHH
Q 000799 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILF 147 (1279)
Q Consensus 86 LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfG-IPL~~gVLITav~t~LL 147 (1279)
|.+..+..+|+...+++.+.+.+|++.+.++-+..+|-=++-++. ++...++.++.+..+++
T Consensus 263 L~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~i 325 (427)
T PF05525_consen 263 LSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFII 325 (427)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHH
Confidence 556666678888888888888888888888877777777777776 57666666666666554
No 135
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=41.20 E-value=4.3e+02 Score=32.99 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=45.9
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Q 000799 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILF 147 (1279)
Q Consensus 86 LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfGIPL~~gVLITav~t~LL 147 (1279)
+...+...+|++..+++.+.+.+++..+.++.+.+.|-=++-++.++..++++++.+.++++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~l 328 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVV 328 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHH
Confidence 44556777888888888888888888888888888877777776777666666666655544
No 136
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=39.33 E-value=7.6e+02 Score=30.21 Aligned_cols=32 Identities=22% Similarity=0.160 Sum_probs=20.1
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhHHHHH
Q 000799 280 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 312 (1279)
Q Consensus 280 dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTIT 312 (1279)
+-.+..++.+| +..++++.+..+...+..++.
T Consensus 73 ~~~~~~~~~~G-~~~~~li~~s~~~~~~~~~~a 104 (415)
T COG0814 73 SITSLVEDYLG-KKGGILIGLSYFFALYGLLVA 104 (415)
T ss_pred cHHHHHHHHhC-cchHHHHHHHHHHHHHHHHHH
Confidence 33445688887 566677776666666555443
No 137
>PRK11598 putative metal dependent hydrolase; Provisional
Probab=37.93 E-value=4.1e+02 Score=33.84 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 000799 295 PFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 295 ~~LFAIGLLAAGqSSTITgTl 315 (1279)
+.++++-++.++.++-.+..|
T Consensus 75 k~~~~~l~~~sa~~~Yf~~~y 95 (545)
T PRK11598 75 RPLACLFILVGAAAQYFMMTY 95 (545)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334444444444444444444
No 138
>TIGR03732 lanti_perm_MutE lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.
Probab=37.90 E-value=4e+02 Score=29.96 Aligned_cols=59 Identities=12% Similarity=0.136 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cCCC
Q 000799 336 ATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIM-GVHK 394 (1279)
Q Consensus 336 litrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IM-Ge~r 394 (1279)
.+..++.++|.+.+++..-....+.....-|.-..+.+|+.+.-+-.+..+++-. |.|+
T Consensus 14 ~i~~l~~i~Pl~~~~l~~~~~~~y~~~~~~n~w~~~~lP~~iaii~~~~~~~E~~~~~~k 73 (241)
T TIGR03732 14 FSKKLIWIAPIIFLLLAFLLSPSYFQYATFNWWYVIFLPGMIALICALLHKKEKKASNYR 73 (241)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 3444555666665543210000011111223344568999888777776555544 4444
No 139
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.82 E-value=5.9e+02 Score=28.05 Aligned_cols=29 Identities=10% Similarity=0.232 Sum_probs=12.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 393 HKISQYHEFLVLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 393 ~rnS~~lnILawli~llIi~LNIyfVi~~l 422 (1279)
.|.+.|..++ +.+.++++.+.++.+..++
T Consensus 142 ~r~~~~k~~~-~~~~~~~~w~~~~~~~~~l 170 (206)
T PF06570_consen 142 KRPSWWKYIL-ISVLAMVLWIVIFVLTSFL 170 (206)
T ss_pred cccHHHHHHH-HHHHHHHHHHHHHHHHHHc
Confidence 4444444443 3333333334444444443
No 140
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=37.57 E-value=1.2e+03 Score=31.51 Aligned_cols=26 Identities=4% Similarity=-0.006 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000799 54 GFDLVALMLVFNFAAIFCQYLSARIA 79 (1279)
Q Consensus 54 GY~LLWVLLLStIma~llQeLSARLG 79 (1279)
-+.++|-++++.++++++=.+++++-
T Consensus 205 l~~~L~~i~~GiliG~vvG~l~~~Ll 230 (810)
T TIGR00844 205 CVTILWECIFGSILGCIIGYCGRKAI 230 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888887777766666654
No 141
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=2.1e+02 Score=32.88 Aligned_cols=32 Identities=19% Similarity=0.108 Sum_probs=14.5
Q ss_pred HHHHHhhCChhHHHHHHHHHHHHHHHHhhcchh
Q 000799 123 HGLNLLMGVELSTCVFLAAADAILFPFFAGQLE 155 (1279)
Q Consensus 123 IALnLLfGIPL~~gVLITav~t~LLL~lgsY~g 155 (1279)
.++..|+| -.|.-.+++++..++...+..|..
T Consensus 137 ~~f~~l~g-G~w~d~~iaf~~~~~~~~~~~~l~ 168 (250)
T COG2966 137 AAFALLFG-GGWLDFLIAFFAGLLGFLLRQYLS 168 (250)
T ss_pred HHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHH
Confidence 34555777 334444444444444433433433
No 142
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=36.49 E-value=5.8e+02 Score=32.78 Aligned_cols=15 Identities=13% Similarity=0.107 Sum_probs=7.8
Q ss_pred HHHhhhhHHHHHhhh
Q 000799 22 RLVPAVLPVLLISIG 36 (1279)
Q Consensus 22 klLa~LGPGfLvAaA 36 (1279)
+.+..++++|....-
T Consensus 12 ~~~l~ll~a~~~~l~ 26 (555)
T COG2194 12 KLSLSLLLAWYFLLL 26 (555)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444456666655443
No 143
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=36.49 E-value=1.6e+02 Score=33.93 Aligned_cols=29 Identities=7% Similarity=-0.002 Sum_probs=15.4
Q ss_pred HHHHHHHHhhCChhHHHHHHHHHHHHHHH
Q 000799 120 GIAHGLNLLMGVELSTCVFLAAADAILFP 148 (1279)
Q Consensus 120 GiAIALnLLfGIPL~~gVLITav~t~LLL 148 (1279)
+++.++...|+.|.|+++++.++..++++
T Consensus 32 s~~~a~~~~~~~~~~~ai~~glvwgl~I~ 60 (301)
T PF14362_consen 32 SGGYALYTVFGGPVWAAIPFGLVWGLVIF 60 (301)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 34445555667666666655544444433
No 144
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=36.26 E-value=7.2e+02 Score=33.92 Aligned_cols=74 Identities=15% Similarity=0.086 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHHHHHh--cc
Q 000799 133 LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLL--GA 210 (1279)
Q Consensus 133 L~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLVP~lp~~sl~~aVALI--GA 210 (1279)
+.=++++..+++++ |+++. |..-..+..+-.-|+++|++.-.. +-.. +- .+-+++.+++|++ |+
T Consensus 340 LiEg~vlV~iVl~l--FLgn~---RsAli~~~~lPLS~li~f~~M~~~-gi~~----Nl----MSLGGlAIaiG~~VD~A 405 (1027)
T COG3696 340 LIEGSVLVIIVLAL--FLGNF---RSALIVIISLPLSLLIAFIVMNFF-GISA----NL----MSLGGLAIAIGAMVDAA 405 (1027)
T ss_pred HHhhhHHHHHHHHH--HhccH---HHHHHHHHHHHHHHHHHHHHHHHc-CCcc----hh----hcccchheeeeeeecce
Confidence 34455555554444 44553 443223333344456666653322 1111 10 1223444555555 67
Q ss_pred cchhHHHHHh
Q 000799 211 SMMPHNFYLH 220 (1279)
Q Consensus 211 TIMPhnlyLH 220 (1279)
+|+--|.|=|
T Consensus 406 IV~vEN~~r~ 415 (1027)
T COG3696 406 IVVVENAHRR 415 (1027)
T ss_pred EEeehhHHHH
Confidence 7888888754
No 145
>PRK13743 conjugal transfer protein TrbF; Provisional
Probab=35.98 E-value=2.6e+02 Score=29.60 Aligned_cols=39 Identities=13% Similarity=0.132 Sum_probs=27.5
Q ss_pred ccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHH
Q 000799 275 LLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNL 315 (1279)
Q Consensus 275 V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTl 315 (1279)
+.++..+-..|--+. |++.+.+|.|.|.|++++.+....
T Consensus 75 Lnn~rymWNilMYaI--Py~L~Ala~GFlv~~~~~p~~~~i 113 (141)
T PRK13743 75 LNNFRYMWNILMYVI--PYTLWALAAGFLVAGVRNPLCELI 113 (141)
T ss_pred hhhHHHHHHHHHHHH--HHHHHHHHhchhhhhhhhHHHHHH
Confidence 445666665554443 678888899999999888885443
No 146
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=35.74 E-value=5.2e+02 Score=30.76 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCcHHHHHHhh
Q 000799 68 AIFCQYLSARIAVVTGKDLAQICGEE 93 (1279)
Q Consensus 68 a~llQeLSARLGvVTGk~LAEl~Re~ 93 (1279)
...++.-+.-+..-|...+.+-.|+.
T Consensus 169 ~~~~~~GA~~l~~kt~g~l~~rar~~ 194 (328)
T PF02322_consen 169 ALFALHGAVFLALKTEGELRERARRW 194 (328)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 33455566777777888888777764
No 147
>TIGR00930 2a30 K-Cl cotransporter.
Probab=35.70 E-value=1.3e+03 Score=31.51 Aligned_cols=15 Identities=27% Similarity=0.273 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHH
Q 000799 447 FLITTFTSLCLMLWL 461 (1279)
Q Consensus 447 ~~~~~~~yl~f~lyL 461 (1279)
+++++++|+++.+.+
T Consensus 321 i~i~~vlYllv~~~~ 335 (953)
T TIGR00930 321 ILTTTVVYLGSVVLF 335 (953)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344556666665433
No 148
>PF07907 YibE_F: YibE/F-like protein; InterPro: IPR012507 The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE (Q9CHC5 from SWISSPROT) and YibF (Q9CHC4 from SWISSPROT). Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.
Probab=34.95 E-value=7.5e+02 Score=28.43 Aligned_cols=24 Identities=13% Similarity=0.128 Sum_probs=12.3
Q ss_pred hCC-hhHHHHHHHHHHHHHHHHhhc
Q 000799 129 MGV-ELSTCVFLAAADAILFPFFAG 152 (1279)
Q Consensus 129 fGI-PL~~gVLITav~t~LLL~lgs 152 (1279)
-|. |.++.++...+.+.+-+++.+
T Consensus 46 ~G~~~~~v~~i~~~~~~~vtl~lv~ 70 (244)
T PF07907_consen 46 NGYNPILVTIIAAILITAVTLFLVN 70 (244)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 477 555555555554444444433
No 149
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=34.94 E-value=13 Score=43.22 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhh
Q 000799 140 AAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPL 187 (1279)
Q Consensus 140 Tav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~is~Pd~~e 187 (1279)
.++.+|+.+++.+.++...-..+..||..++.+.|++.+++.+-.|=.
T Consensus 118 LaL~vW~Ym~lLr~~GAs~WtiLaFcLAF~LaivlLIIAv~L~qaWfT 165 (381)
T PF05297_consen 118 LALGVWFYMWLLRELGASFWTILAFCLAFLLAIVLLIIAVLLHQAWFT 165 (381)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445545544333333222333344444555566666666666643
No 150
>PRK03557 zinc transporter ZitB; Provisional
Probab=34.36 E-value=8.2e+02 Score=28.67 Aligned_cols=166 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred HhhcCchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhCChhHHHHHHHHHHHHHHHHhhcc-------hhHHHH
Q 000799 91 GEEYDKWTCVFIGVQTELSVILLDLTMVLGI----AHGLNLLMGVELSTCVFLAAADAILFPFFAGQ-------LENYKA 159 (1279)
Q Consensus 91 Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGi----AIALnLLfGIPL~~gVLITav~t~LLL~lgsY-------~g~rkl 159 (1279)
++.+-|...+.+++-+.++++-.-.+-+.|. |-|++.+.. +++.+.+++-+.+.++ +|+.|+
T Consensus 14 ~~~~~r~~~~~~~~n~~l~i~k~~~g~~tgS~AllaDa~hsl~D-------~~~~~~~l~a~~~s~kp~d~~hpyG~~r~ 86 (312)
T PRK03557 14 EDNNARRLLYAFGVTAGFMLVEVIGGFLSGSLALLADAGHMLTD-------AAALLFALLAVQFSRRPPTIRHTFGWLRL 86 (312)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCCCCCCCCchHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChhhhccccc-cccCCChHHHHHHHhcccchhHHHHHhHHhhhhccccccccchhh
Q 000799 160 KLLWICTAGIILLSYVLGVLISQPEIPLSVNGML-TKFSGDSAFSIMSLLGASMMPHNFYLHSSIVRRHQGQVNISKGAL 238 (1279)
Q Consensus 160 E~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLV-P~lp~~sl~~aVALIGATIMPhnlyLHSaLVqsR~~~~d~~~~a~ 238 (1279)
|.+..++.+++++...+.++. +.+..++ |.-.......+++++|..+.-..+|+.-..-+.+...-.......
T Consensus 87 E~l~al~~~~~l~~~~~~i~~------eai~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~s~~l~a~~~h~ 160 (312)
T PRK03557 87 TTLAAFVNAIALVVITILIVW------EAIERFRTPRPVAGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV 160 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHcCCccccchHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhc
Q 000799 239 CHDHFFAILCIFSGIYMVN--------YVLMNSAANLFY 269 (1279)
Q Consensus 239 r~D~~~gil~il~gsfLIN--------laImivaAavfy 269 (1279)
+.|.+.++..++.+.++.. ++-++++..+++
T Consensus 161 ~~D~l~s~~vlv~~~~~~~~g~~~~Dpi~~ilis~~i~~ 199 (312)
T PRK03557 161 LGDLLGSVGAIIAALIIIWTGWTPADPILSILVSVLVLR 199 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHH
No 151
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=34.06 E-value=5.5e+02 Score=30.66 Aligned_cols=48 Identities=19% Similarity=0.149 Sum_probs=28.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~ 328 (1279)
..+.++..+|++..+.+.++..+...+.....-..+...+++.+++++
T Consensus 68 ~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~ 115 (407)
T TIGR00813 68 MPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLD 115 (407)
T ss_pred hhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 344578888855666666655544444444444555566777777653
No 152
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=33.81 E-value=8.7e+02 Score=29.71 Aligned_cols=48 Identities=8% Similarity=0.124 Sum_probs=29.4
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~ 328 (1279)
..+.++..+|++....+.++.++...+........++..+++.+++++
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~ 156 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLS 156 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 345578888866666665555555444444444556667778877753
No 153
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=33.67 E-value=6.7e+02 Score=29.86 Aligned_cols=55 Identities=11% Similarity=0.091 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHHHHHhcccch
Q 000799 154 LENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLLGASMM 213 (1279)
Q Consensus 154 ~g~rklE~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLVP~lp~~sl~~aVALIGATIM 213 (1279)
+|++|+|.+.+++-++++++..+-.+ |..+-+=+-|+-......+.+|++|=.+-
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I~-----~EAi~R~~~P~~i~~~~ml~va~~GL~vN 138 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLIL-----WEAIQRLLAPPPIHYSGMLVVAIIGLVVN 138 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhcCCCCCCccchHHHHHHHHHHH
Confidence 57889988765544433222221111 11222212243222345566777775553
No 154
>PF03784 Cyclotide: Cyclotide family; InterPro: IPR005535 Cyclotides (cyclo peptides) are plant peptides of ~30 amino acids with a head to-tail cyclic backbone and six cysteine residues involved in three disulphide bonds. The cyclotides are extremely resistant to proteolysis and are remarkably stable. Cyclotides display a diverse range of biological activities, including uterotonic activity, inhibition of neurotensin binding, hemolytic, anti-HIV and anti-microbial activity. This range of biological activities makes cyclotides amenable to potential pharmaceutical and agricultural applications. Although their precise role in plants has not yet been reported, it appears that they are most likely present as defence molecules [, , , ]. The three-dimensional structure of cyclotides is compact and contains a number of beta-turns, three beta strands arranged in a distorted triple-stranded beta-sheet, a short helical segment, and a network of disulphide bonds which form a cystine knot. The cystine knot consists of an embedded ring in the structure, formed by two disulphide bonds and their connecting backbone segments is threaded by a third disulphide bond. Although the cystine knot motif is now well known in a wide variety of proteins, the cyclotides remain as the only example in which a cystine knot is embedded within a circular protein backbone, a motif that is referred to as the cyclic cystine knot (CCK) [, , , ]. Cyclotides can be separated into two sub-families, one of which tends to contain a larger number of positively charged residues and has a bracelet-like circularisation of the backbone. The second subfamily contains a backbone twist due to a cis-Pro peptide bond and may conceptually be regarded as a molecular Moebius strip [, ]. Bracelet and Moebius families of cyclotides possess a Knottin scaffold. The cyclotide family of proteins is abundant in plants from the Rubiaceae and Violaceae families and includes: Kalata B1. Circulins. Cyclopsychotride A. Cycloviolacin O1. ; GO: 0006952 defense response; PDB: 2ERI_A 2KHB_A 1K48_A 1ZNU_A 1N1U_A 2F2J_A 1ORX_A 1NB1_A 1KAL_A 2F2I_A ....
Probab=33.54 E-value=7.7 Score=31.16 Aligned_cols=11 Identities=36% Similarity=1.352 Sum_probs=9.0
Q ss_pred CCcCCCCceecc
Q 000799 1227 VPHCGDGCIWKV 1238 (1279)
Q Consensus 1227 ~p~cg~~cvw~~ 1238 (1279)
+| |||.|||--
T Consensus 2 ip-CGEtCv~~p 12 (30)
T PF03784_consen 2 IP-CGETCVFIP 12 (30)
T ss_dssp EE-EEEETSSSS
T ss_pred CC-cccceeeee
Confidence 56 999999953
No 155
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=33.19 E-value=6.6e+02 Score=29.06 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhccc-cccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 370 AIMLPSSVIPLFRVASSRQ-IMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIF 423 (1279)
Q Consensus 370 sL~LPFaLIPLL~LtNsR~-IMGe~rnS~~lnILawli~llIi~LNIyfVi~~lf 423 (1279)
-++.-++.+..+++++++. ---+|-.+++..+.+.+..+++++++++.+++.+.
T Consensus 49 D~~~~~l~l~~~~~s~k~~d~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~esi~ 103 (299)
T PRK09509 49 DIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTGIQ 103 (299)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555554322 11234555677777777777777777777766653
No 156
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=33.17 E-value=2.5e+02 Score=30.32 Aligned_cols=80 Identities=10% Similarity=0.142 Sum_probs=39.3
Q ss_pred HHHHHHhhCCh--hHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhccccccc
Q 000799 122 AHGLNLLMGVE--LSTCVFLAAADAILFPFF-AGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTK 195 (1279)
Q Consensus 122 AIALnLLfGIP--L~~gVLITav~t~LLL~l-gsY~g~rklE~li~lLV~IM~LaFVi~l~---is~Pd~~eV~~GLVP~ 195 (1279)
++++.++|..| .+..+.+++...+.+-++ .++.+.-. ....+++.+++.++-..+ .-.|...-...|++|-
T Consensus 17 ~v~Faivfnvp~~~l~~~~~~g~~g~~v~~l~~~~~g~~~---~~atfiaa~~vg~lg~~~sr~~k~p~~v~~vpaIiPl 93 (156)
T COG3610 17 TVGFAIVFNVPPRALPICGFLGALGWVVYYLLGKHFGFSI---VVATFIAAFVVGCLGNLLSRRYKTPAKVFTVPAIIPL 93 (156)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHHHHHHHhcCChhhhecchhhhc
Confidence 34566677663 233333444444444322 22222212 223333444444443332 2235545556888999
Q ss_pred cCCChHHHH
Q 000799 196 FSGDSAFSI 204 (1279)
Q Consensus 196 lp~~sl~~a 204 (1279)
+|+...+.+
T Consensus 94 VPG~~ay~a 102 (156)
T COG3610 94 VPGGLAYQA 102 (156)
T ss_pred CCcHHHHHH
Confidence 999877763
No 157
>PRK11281 hypothetical protein; Provisional
Probab=32.95 E-value=1.6e+03 Score=31.53 Aligned_cols=188 Identities=11% Similarity=0.084 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000799 242 HFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 242 ~~~gil~il~gsfLINlaImivaAavfygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
+..+++..++.+.-+.+.++++|-...+.. .......+..++.++++-..+.... ....-.=+.
T Consensus 542 T~~al~~t~l~alp~~l~~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~~w~~~~~~~-~~~~~~Gl~ 605 (1113)
T PRK11281 542 TPKAILITLLLALPVTLIFLAVGLILLTDA---------------FNQSELLWSWSLKLALFWLVFATCY-RVLRPNGVA 605 (1113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------------ccchHHHHHHHHHHHHHHHHHHHHH-HHhCCCCee
Q ss_pred HhhhCCC---cCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHH
Q 000799 322 QDFLRLD---IPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQY 398 (1279)
Q Consensus 322 eGFL~l~---i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~ 398 (1279)
+..|+|+ ...+.+.+-.....++|.+++..++... +..+..-.---..+++-.++..++.+--.+....+...+..
T Consensus 606 ~~HF~w~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~-~~~~~~d~lg~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1113)
T PRK11281 606 ERHFGMPKEQVSHFRRQIVRLSLALLPLLFWSVVAELS-PLGLADDVIGQAVIIIALALIAFLVWPLCRESWRDKESHTL 684 (1113)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-chhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccccchHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHh
Q 000799 399 HEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATT 464 (1279)
Q Consensus 399 lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~ 464 (1279)
..++-++..++=+++.+..+.-+++ ....++.=+..-+...++|++++
T Consensus 685 ~~~~~~~l~~~P~~l~~l~~~GY~y------------------Ta~~l~~~l~~s~~l~~~~~l~~ 732 (1113)
T PRK11281 685 RLVVRTVLTIAPIALIVLVVLGYYY------------------TALRLIGRLIETLYLLIIWNLLY 732 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHH
No 158
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=32.88 E-value=6e+02 Score=30.90 Aligned_cols=72 Identities=8% Similarity=0.260 Sum_probs=44.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhC-CCcCCchHHHHHHHHHHHHHHHHH------------HhcCchhHHHHHHHHHH
Q 000799 301 VLFFSNQIIAVNWNLSGQVVLQDFLR-LDIPGWLHHATIRIISIVPALYCV------------WTSGAEGVYQLLIFTQV 367 (1279)
Q Consensus 301 GLLAAGqSSTITgTlAGq~VmeGFL~-l~i~~w~rrlitrlIAIIPALiVa------------l~~G~~~~vqLLI~aQV 367 (1279)
+++++.++|.+.+.| +|..++ -+.+-|.|.+-.-++.++.+++.. +|.|-+..+.++++.|+
T Consensus 187 avl~~c~~SgfAgvY-----fEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vVl~~a 261 (345)
T KOG2234|consen 187 AVLVACFLSGFAGVY-----FEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVVLLNA 261 (345)
T ss_pred HHHHHHHHHHHHHHH-----HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHHHHHh
Confidence 344555666665554 233332 245678887654455555555544 45666678899999999
Q ss_pred HHHHHHHHHH
Q 000799 368 MVAIMLPSSV 377 (1279)
Q Consensus 368 l~sL~LPFaL 377 (1279)
++++...+++
T Consensus 262 ~gGLlvs~v~ 271 (345)
T KOG2234|consen 262 VGGLLVSLVM 271 (345)
T ss_pred ccchhHHHHH
Confidence 9998775543
No 159
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=32.72 E-value=4.3e+02 Score=32.71 Aligned_cols=54 Identities=11% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHHHHHHH
Q 000799 49 GGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQT 106 (1279)
Q Consensus 49 AGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~LwI~a 106 (1279)
.+-.|...|+-++.++-.+++... .+...||.++...++.-+|...-.++.+++
T Consensus 95 ~~~vF~lsll~iiPLA~~l~~ate----qls~~tg~tvGgllNAtfGnaiElii~ilA 148 (441)
T KOG1397|consen 95 KGWVFLLSLLGIIPLAERLGFATE----QLSAYTGPTVGGLLNATFGNAIELIIYILA 148 (441)
T ss_pred chHHHHHHHhhhhhHHHHHHHHHH----HHHhhcCCcHHHHHhhhhccHHHHHHHHHH
Confidence 344566666666666666655554 455669999999999999987766655443
No 160
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=32.53 E-value=7.8e+02 Score=27.87 Aligned_cols=83 Identities=12% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHH
Q 000799 367 VMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAV 446 (1279)
Q Consensus 367 Vl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v 446 (1279)
++.+++--|+...+.++..+..--...|.+.| +.++.+...+++-+.++++ +.+.. +.-+..++-+.
T Consensus 131 ll~a~vgGfamy~my~y~yr~~ad~sqr~~~~-K~~lv~~~sm~lWi~v~i~-t~~lP-----------tslN~~L~pi~ 197 (226)
T COG4858 131 LLTAVVGGFAMYIMYYYAYRMRADNSQRPGTW-KYLLVAVLSMLLWIAVMIA-TVFLP-----------TSLNPQLPPIA 197 (226)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccCCchH-HHHHHHHHHHHHHHHHHHH-HhhCC-----------CcCCcCCchHH
Confidence 44455566666667766654332223555555 4444433333333444433 22221 11122244455
Q ss_pred HHHHHHHHHHHHHHHH
Q 000799 447 FLITTFTSLCLMLWLA 462 (1279)
Q Consensus 447 ~~~~~~~yl~f~lyL~ 462 (1279)
+.++..+.+++=.||=
T Consensus 198 l~IiGav~lalRfylk 213 (226)
T COG4858 198 LTIIGAVILALRFYLK 213 (226)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666667777777763
No 161
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=32.05 E-value=9.3e+02 Score=28.61 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000799 362 LIFTQVMVAIMLPSSVIPLFRVASSR 387 (1279)
Q Consensus 362 LI~aQVl~sL~LPFaLIPLL~LtNsR 387 (1279)
-.+.+++..+++|+++.-+++-...|
T Consensus 175 ~~~~~l~~~v~lPlvlG~~lr~~~~~ 200 (328)
T TIGR00832 175 TIAKSVLIYLGIPLIAGILTRYWLLK 200 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999888765544
No 162
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=32.00 E-value=1.6e+03 Score=31.40 Aligned_cols=13 Identities=31% Similarity=0.258 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhc
Q 000799 341 ISIVPALYCVWTS 353 (1279)
Q Consensus 341 IAIIPALiVal~~ 353 (1279)
..++|.+.+..++
T Consensus 607 ~~~~pl~~~~~~~ 619 (1109)
T PRK10929 607 GLIVPLIMALITF 619 (1109)
T ss_pred HHHHHHHHHHHHH
Confidence 3456776654443
No 163
>PF02535 Zip: ZIP Zinc transporter; InterPro: IPR003689 These ZIP zinc transporter proteins define a family of metal ion transporters that are found in plants, protozoa, fungi, invertebrates, and vertebrates, making it now possible to address questions of metal ion accumulation and homeostasis in diverse organisms [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane
Probab=30.79 E-value=7.8e+02 Score=27.95 Aligned_cols=31 Identities=13% Similarity=-0.033 Sum_probs=15.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000799 45 VIIEGGAHFGFDLVALMLVFNFAAIFCQYLS 75 (1279)
Q Consensus 45 T~lQAGA~fGY~LLWVLLLStIma~llQeLS 75 (1279)
-.+.-|+.+.-...|.+.++.++==+.+.++
T Consensus 187 eGl~ig~~~~~~~~~~~~~ai~~Hk~~e~~~ 217 (317)
T PF02535_consen 187 EGLAIGAAFSSDSGWSLFIAIILHKIPEGFA 217 (317)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHhHhHHHhh
Confidence 3344444444444566655554444444443
No 164
>PF10810 DUF2545: Protein of unknown function (DUF2545) ; InterPro: IPR024470 This family of proteins with unknown function appear to be restricted to Enterobacteriaceae. Their sequences are highly conserved.
Probab=30.51 E-value=2.6e+02 Score=26.91 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhC
Q 000799 101 FIGVQTELSVIL--LDLTMVLGIAHGLNLLMG 130 (1279)
Q Consensus 101 ~LwI~aeLAiIa--aDIaEVIGiAIALnLLfG 130 (1279)
.+|.+..+++++ ..+++|+|.+.|..-++|
T Consensus 3 YlW~FL~lsIlcVSgYigQVlg~~savSsf~g 34 (80)
T PF10810_consen 3 YLWTFLALSILCVSGYIGQVLGVASAVSSFFG 34 (80)
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 567777666655 578999999988876554
No 165
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=29.96 E-value=1.5e+02 Score=40.03 Aligned_cols=12 Identities=0% Similarity=0.113 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q 000799 452 FTSLCLMLWLAT 463 (1279)
Q Consensus 452 ~~yl~f~lyL~~ 463 (1279)
++|++|++|-+.
T Consensus 1073 vlYvvFLV~aiL 1084 (1096)
T TIGR00927 1073 LLYFVFLIISVM 1084 (1096)
T ss_pred HHHHHHHHHHHH
Confidence 467777766443
No 166
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=29.12 E-value=1.3e+03 Score=29.29 Aligned_cols=99 Identities=12% Similarity=0.179 Sum_probs=48.4
Q ss_pred HHHhhccCCccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCCcCCchHHHHHHHHHH
Q 000799 264 AANLFYSTGLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLDIPGWLHHATIRIISI 343 (1279)
Q Consensus 264 aAavfygtG~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~i~~w~rrlitrlIAI 343 (1279)
.|.-++..|. .|. .+.++.-++++..+.+-++..+...+.-...-..++..+++.+++++ .+.- ..++++
T Consensus 120 ~a~~lrr~g~--~T~---~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~--~~~~---iii~~~ 189 (549)
T TIGR02711 120 IAERLRNLGR--YTF---ADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLN--YHVA---VVLVGI 189 (549)
T ss_pred HHHHHHHcCC--ccH---HHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHH---HHHHHH
Confidence 3444544442 344 44567778766666666655544433323334455566778877753 2211 111222
Q ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH
Q 000799 344 VPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSV 377 (1279)
Q Consensus 344 IPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaL 377 (1279)
+-.++ +++.|. .-..+.|++|++++=+..
T Consensus 190 i~~~Y-t~~GGm----~av~~td~iQ~~im~~g~ 218 (549)
T TIGR02711 190 LMVMY-VLFGGM----LATTWVQIIKAVLLLFGA 218 (549)
T ss_pred HHHHH-HHhhhh----HHHHHHHHHHHHHHHHHH
Confidence 22222 223332 235577777776554433
No 167
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=29.11 E-value=9.2e+02 Score=27.64 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhCChhHHHHHHHHHH-HHHHHHhhcchhHHHHHHHHHHH
Q 000799 118 VLGIAHGLNLLMGVELSTCVFLAAAD-AILFPFFAGQLENYKAKLLWICT 166 (1279)
Q Consensus 118 VIGiAIALnLLfGIPL~~gVLITav~-t~LLL~lgsY~g~rklE~li~lL 166 (1279)
+.|.++|+ ++|+|+.++.++.++. ++++-++.++ ..-+.+.++.++
T Consensus 43 ~~G~~la~--~l~~~~~~~a~~~~~l~a~~i~~l~~~-~~~~~d~~iGi~ 89 (261)
T PRK09543 43 LLGVAFGL--LLDVNPFYAVIAVTLLLAGGLVWLEKR-PQLAIDTLLGIM 89 (261)
T ss_pred HHHHHHHH--HHcchHHHHHHHHHHHHHHHHHHHHHh-cCCchHHHHHHH
Confidence 33555554 6788666655544444 3444344322 222345554443
No 168
>PRK12488 acetate permease; Provisional
Probab=28.07 E-value=1.3e+03 Score=29.14 Aligned_cols=48 Identities=4% Similarity=-0.009 Sum_probs=27.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~ 328 (1279)
..+.++.-++++..+.+-++..+...+.=...-..++..+++.+++++
T Consensus 132 ~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~ 179 (549)
T PRK12488 132 FADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGIS 179 (549)
T ss_pred hHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344578788766667666655544433333333445556677777653
No 169
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=28.07 E-value=1.3e+03 Score=29.21 Aligned_cols=203 Identities=10% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC-CccccCHHHHHHHHHHhhccchHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhh
Q 000799 248 CIFSGIYMVNYVLMNSAANLFYST-GLVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQII-AVNWNLSGQVVLQDFL 325 (1279)
Q Consensus 248 ~il~gsfLINlaImivaAavfygt-G~~V~tl~dAa~aLeplLGG~~A~~LFAIGLLAAGqSS-TITgTlAGq~VmeGFL 325 (1279)
+.+...+.+--+++.+..+.+|.. |+.+.....-...+...+|..+|..-.-+.++..--.+ ++.+..-++++++.|+
T Consensus 46 vg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~f 125 (479)
T KOG1287|consen 46 VGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFF 125 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccC
Q ss_pred C-CCcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCch------HH
Q 000799 326 R-LDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKIS------QY 398 (1279)
Q Consensus 326 ~-l~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS------~~ 398 (1279)
. -.++++..+++..++.++.+++-....+. -..+.++..+.=-+.+-+.+++=++ --.+.-++.+++. +-
T Consensus 126 p~c~~p~~~~~lla~~~l~~lt~~n~~~V~~--a~~vq~~ft~~Kl~al~lIii~G~~-~~~~g~~~~~~~~~f~g~~~~ 202 (479)
T KOG1287|consen 126 PLCDVPRVASKLLAAALLVLLTLINSFSVKW--ATRVQIVFTIAKLLALLLIIITGLY-LLFWGSTQNFENSEFEGSDTD 202 (479)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHHHHHHHHHHHHHhchh-eeEecccccccccccccCcCc
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHH
Q 000799 399 HEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLML 459 (1279)
Q Consensus 399 lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~l 459 (1279)
.-.++...--.+...|.+-..+++.+ .++.+.-+-.....+-+.++++.|+.-.+
T Consensus 203 ~g~i~lafysglfa~~GWd~lN~vte------EiknP~ktLP~Ai~isi~lvt~iYil~Nv 257 (479)
T KOG1287|consen 203 VGNIALAFYSGLFAFSGWDYLNYVTE------EIKNPRRTLPRAILISIPLVTVIYVLVNV 257 (479)
T ss_pred hHHHHHHHHHhhhcccCchhhccchH------hhcCccccchHHHHHhhHHHHHHHHHhHh
No 170
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=28.04 E-value=1.3e+03 Score=29.17 Aligned_cols=8 Identities=0% Similarity=-0.023 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 000799 450 TTFTSLCL 457 (1279)
Q Consensus 450 ~~~~yl~f 457 (1279)
.+++|+..
T Consensus 275 ~~vlY~lv 282 (557)
T TIGR00906 275 CFVAYFLM 282 (557)
T ss_pred HHHHHHHH
Confidence 33444443
No 171
>PRK11026 ftsX cell division ABC transporter subunit FtsX; Provisional
Probab=28.03 E-value=1.1e+03 Score=27.97 Aligned_cols=54 Identities=17% Similarity=0.199 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCcHHHHHHhhcCc
Q 000799 42 KWAVIIEGGAHFGFDLVALMLVFNFAAIFC-QYLSARIAVVTGKDLAQICGEEYDK 96 (1279)
Q Consensus 42 nIaT~lQAGA~fGY~LLWVLLLStIma~ll-QeLSARLGvVTGk~LAEl~Re~Ygk 96 (1279)
.|...+..=..+.-..+|++.+..++..++ -..+.|+.+...+.-.++.|- .|-
T Consensus 166 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~i~ntir~~v~~r~~ei~im~~-~GA 220 (309)
T PRK11026 166 SWFARLAALTGLVGRVAAMIGVLMVAAVFLVIGNSVRLSIFSRRDTINVMKL-IGA 220 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCC
Confidence 566665555555444566665555555444 556899999999998888765 453
No 172
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=27.78 E-value=1.3e+03 Score=28.98 Aligned_cols=78 Identities=9% Similarity=-0.023 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhcCCcH-HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-Ch
Q 000799 56 DLVALMLVFNFAA-IFCQYLSARIAVVTGKDL-AQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VE 132 (1279)
Q Consensus 56 ~LLWVLLLStIma-~llQeLSARLGvVTGk~L-AEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfG-IP 132 (1279)
+-.|...+..++. .++..+.+=.+.++|+.- .......+|. ...+..+.+.++.+.++.-+.=++++++..+++ ++
T Consensus 227 ~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~-~g~~~~lil~l~~~ttN~~nlYsa~ls~~~i~~~l~ 305 (442)
T COG1457 227 KAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG-FGLPAILILVLGTVTTNANNLYSAGLSFANIIPKLS 305 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhhhhhh
Confidence 5555555554444 456667788888898887 5555555665 444445566777788777777778887776765 44
Q ss_pred hH
Q 000799 133 LS 134 (1279)
Q Consensus 133 L~ 134 (1279)
..
T Consensus 306 k~ 307 (442)
T COG1457 306 KV 307 (442)
T ss_pred hH
Confidence 33
No 173
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=27.56 E-value=1.1e+03 Score=28.78 Aligned_cols=150 Identities=17% Similarity=0.151 Sum_probs=72.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCcHHHHHHh--------hcC--c-hhHH-HHHHHHHHHHHHHHHH
Q 000799 53 FGFDLVALMLVFNFAAIFCQYLSARIAVV----TGKDLAQICGE--------EYD--K-WTCV-FIGVQTELSVILLDLT 116 (1279)
Q Consensus 53 fGY~LLWVLLLStIma~llQeLSARLGvV----TGk~LAEl~Re--------~Yg--k-~~~~-~LwI~aeLAiIaaDIa 116 (1279)
|==+++-.+.+++++++++--+-.|+|-. ||++- +.|. +-. + ...+ -+..-..++...+.++
T Consensus 118 ~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~--L~~~~~~~~~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g 195 (347)
T TIGR00783 118 IFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGE--LVRSEKREDAEKAKEITEIKIDVKLMGSGVLFAVALFMAG 195 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCce--EeecCCcchhhhccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 44468888999999999999999999876 66653 2210 000 1 1111 1111122223233333
Q ss_pred HHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChhhhcccccccc
Q 000799 117 MVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLISQPEIPLSVNGMLTKF 196 (1279)
Q Consensus 117 EVIGiAIALnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GLVP~l 196 (1279)
.+ ++++.++|.+++.++.++.+-.+=++-+ .-.++...+-.++...+....+..+-++.-+|.++++-+-|+
T Consensus 196 ~l------~~~~~~Ih~~v~mII~~vi~k~~gllp~-~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~- 267 (347)
T TIGR00783 196 GL------LKSFPGIPAYAFMILIAAALKAFGLVPK-EIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQ- 267 (347)
T ss_pred HH------HHhcccCCHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchh-
Confidence 11 1234467777777776665544433322 222333333222222222222222234556777777655232
Q ss_pred CCChHHHHHHHhcccchh
Q 000799 197 SGDSAFSIMSLLGASMMP 214 (1279)
Q Consensus 197 p~~sl~~aVALIGATIMP 214 (1279)
.-+..+++++|+.+..
T Consensus 268 --~vviiv~~Vlg~ii~s 283 (347)
T TIGR00783 268 --FVVICLSVVVAMILGG 283 (347)
T ss_pred --HhhhHHHHHHHHHHHH
Confidence 1233455666655543
No 174
>PRK10263 DNA translocase FtsK; Provisional
Probab=27.49 E-value=8e+02 Score=34.78 Aligned_cols=13 Identities=23% Similarity=0.278 Sum_probs=6.3
Q ss_pred HHHHHhHHHHHHH
Q 000799 49 GGAHFGFDLVALM 61 (1279)
Q Consensus 49 AGA~fGY~LLWVL 61 (1279)
.||....-|++++
T Consensus 67 VGA~LAD~L~~LF 79 (1355)
T PRK10263 67 PGAWLADTLFFIF 79 (1355)
T ss_pred HHHHHHHHHHHHH
Confidence 4555554444433
No 175
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=27.05 E-value=1.8e+02 Score=30.41 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=45.3
Q ss_pred HHHhhCChhHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHHHHHHHHHHHHHHHHhhCCChhhhcccc--cc-----cc
Q 000799 125 LNLLMGVELSTCVFLAAADAILFPFFAGQLENYKA-KLLWICTAGIILLSYVLGVLISQPEIPLSVNGM--LT-----KF 196 (1279)
Q Consensus 125 LnLLfGIPL~~gVLITav~t~LLL~lgsY~g~rkl-E~li~lLV~IM~LaFVi~l~is~Pd~~eV~~GL--VP-----~l 196 (1279)
+..++|+|...-..+..+ .++...+....++. +.+...++......++.+++..+|-.--++-++ .- .-
T Consensus 15 ~~~~~~~~~p~~~pvf~~---~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~~~~~f~~~~~ 91 (140)
T PF11168_consen 15 LSKLFGWPLPFFAPVFPA---ILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLLFFWSFYRMSR 91 (140)
T ss_pred HHHHHCCCchHHHHHHHH---HHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC
Confidence 344567765543333222 22222222223333 333333444445556666666677654333222 11 12
Q ss_pred CCChHHHHHHHhcccchhHH
Q 000799 197 SGDSAFSIMSLLGASMMPHN 216 (1279)
Q Consensus 197 p~~sl~~aVALIGATIMPhn 216 (1279)
++..++..+++++.+++||.
T Consensus 92 ~~~~l~~~~~lv~~~ii~~f 111 (140)
T PF11168_consen 92 GPKFLFGTMLLVGLSIIPVF 111 (140)
T ss_pred CCchHHHHHHHHHHHHHHHH
Confidence 34567778999999999984
No 176
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=26.76 E-value=6.2e+02 Score=32.12 Aligned_cols=128 Identities=8% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCccccCHHHHHHHHHHhhc---cchHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHhhh
Q 000799 252 GIYMVNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFR---SPVVPFAFVLVLFFSNQIIAVNWNLS---GQVVLQDFL 325 (1279)
Q Consensus 252 gsfLINlaImivaAavfygtG~~V~tl~dAa~aLeplLG---G~~A~~LFAIGLLAAGqSSTITgTlA---Gq~VmeGFL 325 (1279)
..|++.+.+++.++..+ +-.++. ....+.++++-++.++.++-.+.+|+ ..-+++..+
T Consensus 45 ~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~k~~~~~l~~~~a~~~yf~~~ygv~id~~mi~nv~ 108 (522)
T PRK09598 45 VSFIAMLVVLLFCVNGL----------------LFLLLGLLSRRLMRLSAIVFSLLNSIAFYFINTYKVFLNKSMMGNVL 108 (522)
T ss_pred HHHHHHHHHHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeecHHHHHHHH
Q ss_pred CCCcC------CchHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHH
Q 000799 326 RLDIP------GWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYH 399 (1279)
Q Consensus 326 ~l~i~------~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~l 399 (1279)
.-+.. .+.-.+...++.++|++++... .+.-.-+...+..+.+.++++.++.+.+.+...--+||.+.+
T Consensus 109 ~T~~~Ea~~~~~~~~~~~~~~l~~lp~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 183 (522)
T PRK09598 109 NTNTAESSGFLSVKLFIYIVVLGVLPGYIIYKI-----PLKNSSKKAPFAAILALVLIFLASAFANSKNWLWFDKHAKFL 183 (522)
T ss_pred hCCHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-----ccccccHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhHHHH
Q ss_pred H
Q 000799 400 E 400 (1279)
Q Consensus 400 n 400 (1279)
+
T Consensus 184 ~ 184 (522)
T PRK09598 184 G 184 (522)
T ss_pred H
No 177
>PRK11375 allantoin permease; Provisional
Probab=26.49 E-value=9.1e+02 Score=30.14 Aligned_cols=42 Identities=10% Similarity=0.070 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHhhC--ChhHHHHHHHHHHH
Q 000799 103 GVQTELSVILLDL-TMVLGIAHGLNLLMG--VELSTCVFLAAADA 144 (1279)
Q Consensus 103 wI~aeLAiIaaDI-aEVIGiAIALnLLfG--IPL~~gVLITav~t 144 (1279)
.+...++.+.+++ +++...+..+..+|+ ++..-++++++++.
T Consensus 314 ~l~~v~a~~~tN~~~N~ys~~~~l~~l~pk~i~~~~~~~i~~iig 358 (484)
T PRK11375 314 VLVILMTTISTNATGNIIPAGYQIAALAPTKLTYKNGVLIASIIS 358 (484)
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHhCcCccchhhHHHHHHHHH
Confidence 3344455555544 466666666555553 24444444443333
No 178
>PRK09917 hypothetical protein; Provisional
Probab=25.85 E-value=5.9e+02 Score=27.41 Aligned_cols=80 Identities=15% Similarity=0.118 Sum_probs=39.5
Q ss_pred HHHHHHHhhCChh--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhccccccc
Q 000799 121 IAHGLNLLMGVEL--STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTK 195 (1279)
Q Consensus 121 iAIALnLLfGIPL--~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~---is~Pd~~eV~~GLVP~ 195 (1279)
+++|+.++|+.|. .+.+.+++...+++-++....+. ......+++.+.+.++.+.+ .-.|.-.-.+-|++|-
T Consensus 20 a~~gFailfn~P~r~l~~~~i~G~vgw~vy~~~~~~~~---~~~~asfiaa~~igl~s~~~Ar~~k~P~tvf~ip~iiPL 96 (157)
T PRK09917 20 PAVGFAMVFNVPVRALRWCALLGAIGHGSRMLMMTSGL---NIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPM 96 (157)
T ss_pred HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHHHHHHhCCCCEEeeHhhHHhc
Confidence 3567778888864 33333445555543222111111 12233334444444443333 2234433456788888
Q ss_pred cCCChHHH
Q 000799 196 FSGDSAFS 203 (1279)
Q Consensus 196 lp~~sl~~ 203 (1279)
+|+...|-
T Consensus 97 VPG~~~Y~ 104 (157)
T PRK09917 97 FPGISAYT 104 (157)
T ss_pred CCCHHHHH
Confidence 89876664
No 179
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=25.59 E-value=1.4e+03 Score=28.74 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=28.4
Q ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhCCC
Q 000799 280 DAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLRLD 328 (1279)
Q Consensus 280 dAa~aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~l~ 328 (1279)
...+.|+..++++..+.+-++..+.+...-...-..++..+++.+++++
T Consensus 96 T~~e~l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~ 144 (552)
T TIGR03648 96 TVPDFIGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVD 144 (552)
T ss_pred cHHHHHHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4456688888766556555544444333333333445667788887753
No 180
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=25.31 E-value=7.8e+02 Score=30.96 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=18.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 53 FGFDLVALMLVFNFAAIFCQYLSARIAVV 81 (1279)
Q Consensus 53 fGY~LLWVLLLStIma~llQeLSARLGvV 81 (1279)
..=+++|.+.+++++.|++ |+|+.
T Consensus 249 L~Nk~iW~la~a~vfvYiv-----R~gi~ 272 (448)
T COG2271 249 LKNKLIWLLALANVFVYVV-----RYGIN 272 (448)
T ss_pred HcChHHHHHHHHHHHHHHH-----HHHHh
Confidence 3447899999999998875 66664
No 181
>KOG1134 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.88 E-value=1.8e+03 Score=29.54 Aligned_cols=13 Identities=23% Similarity=0.580 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHH
Q 000799 367 VMVAIMLPSSVIP 379 (1279)
Q Consensus 367 Vl~sL~LPFaLIP 379 (1279)
|+.=++|||.++.
T Consensus 570 viaPlILpF~lvy 582 (728)
T KOG1134|consen 570 VIAPLILPFGLVY 582 (728)
T ss_pred HhhHHHHHHHHHH
Confidence 4555778887764
No 182
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=24.69 E-value=1.6e+03 Score=29.11 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccC-----------------HHHHHHHHHHhhccch----HHHHHHH
Q 000799 242 HFFAILCIFSGIYMVNYVLMNSAANLFYSTGLVLLT-----------------FQDAMSLMEQVFRSPV----VPFAFVL 300 (1279)
Q Consensus 242 ~~~gil~il~gsfLINlaImivaAavfygtG~~V~t-----------------l~dAa~aLeplLGG~~----A~~LFAI 300 (1279)
.+++.++.+...+.-+.+++...|.++..-+.++.. .......|..+||..| +..+..+
T Consensus 41 ~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vv 120 (599)
T PF06609_consen 41 RFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVV 120 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHh
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhhhCC---------CcCCchHHHHHHHHHHHHHHHHHHhcCchhHHHHHH------HH
Q 000799 301 VLFFSNQIIAVNWNLSGQVVLQDFLRL---------DIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLI------FT 365 (1279)
Q Consensus 301 GLLAAGqSSTITgTlAGq~VmeGFL~l---------~i~~w~rrlitrlIAIIPALiVal~~G~~~~vqLLI------~a 365 (1279)
|.+.++.+-.+....||+.+..--.+. +.-+.+.|.+...+..+|.++..+..+. ..+.+. +.
T Consensus 121 G~Iv~atA~~~~~~iag~~l~GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~--ia~~~~~~~~WRw~ 198 (599)
T PF06609_consen 121 GSIVCATAQNMNTFIAGMVLYGVGAGVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPL--IAQLFAAHSGWRWI 198 (599)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHH--HHHHhccCCCcchH
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc---cccCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ccccccccCCCC
Q 000799 366 QVMVAIMLPSSVIPLFRVASSRQ---IMGVHKISQ--YHEFLVLITFMGMLGLKLIFMVEMIFGNS--DWVGNLRWNSGG 438 (1279)
Q Consensus 366 QVl~sL~LPFaLIPLL~LtNsR~---IMGe~rnS~--~lnILawli~llIi~LNIyfVi~~lfg~s--~w~~~l~~~~~~ 438 (1279)
--+..+.-++.++.++.+-+-+. ..|+....+ +.++=-.-+++++.++.+.++--...|.. .| .+
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W--------~S 270 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPW--------KS 270 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCC--------CC
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 000799 439 TVALPFAVFLITTFTSLCLMLW 460 (1279)
Q Consensus 439 ~~~~~~~v~~~~~~~yl~f~ly 460 (1279)
+..+.-+++ ..++.++|.+|
T Consensus 271 a~VIa~lvi--G~~~Lv~F~~w 290 (599)
T PF06609_consen 271 AHVIAPLVI--GFVLLVAFVVW 290 (599)
T ss_pred ccchhhHHH--HHHHHHHHHHh
No 183
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=24.23 E-value=1.3e+03 Score=27.91 Aligned_cols=42 Identities=14% Similarity=0.189 Sum_probs=22.8
Q ss_pred HHHHhhccchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000799 284 LMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 284 aLeplLGG~~A~~LFAIGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
+-++.+| +.+..+..+..+....+-.+.-.-++.-+.+.+++
T Consensus 70 ~a~~~lG-~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~ 111 (394)
T PF03222_consen 70 MAEKYLG-KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLG 111 (394)
T ss_pred HHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3467787 45556666665555555444433344445555554
No 184
>PRK11463 fxsA phage T7 F exclusion suppressor FxsA; Reviewed
Probab=24.15 E-value=6.3e+02 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.081 Sum_probs=22.2
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHh
Q 000799 42 KWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGE 92 (1279)
Q Consensus 42 nIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re 92 (1279)
.+..-...|...|+ +|++++..+.+++=-.+.-|-|..+=+.+.+..++
T Consensus 15 Ei~~~i~v~~~iG~--~~tl~lvi~t~~lG~~l~r~~G~~~l~~~~~~~~~ 63 (148)
T PRK11463 15 EIAVFIAVASVIGV--GWTLLLVILTSVLGVLLARSQGFKTLLRAQRKLAR 63 (148)
T ss_pred HHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 45555667777764 23322222222222223344444444445555554
No 185
>PF02322 Cyto_ox_2: Cytochrome oxidase subunit II; InterPro: IPR003317 These proteins are cytochrome bd type terminal oxidases that catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. ; GO: 0055114 oxidation-reduction process, 0016020 membrane
Probab=23.96 E-value=1.3e+03 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.362 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 000799 252 GIYMVNYVLMNSAANLF 268 (1279)
Q Consensus 252 gsfLINlaImivaAavf 268 (1279)
++++..++.=++.+.++
T Consensus 121 gSll~~~~~G~~~g~~~ 137 (328)
T PF02322_consen 121 GSLLPPFLLGVALGNLV 137 (328)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 34555555545555554
No 186
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=23.62 E-value=7.9e+02 Score=30.89 Aligned_cols=35 Identities=20% Similarity=0.044 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCCCcccccc
Q 000799 449 ITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQR 484 (1279)
Q Consensus 449 ~~~~~yl~f~lyL~~~pl~s~s~~~~~~~~~~~~~~ 484 (1279)
.+....++|..|+++-+-...+-.++-.+ +|-+|-
T Consensus 288 ~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~ 322 (449)
T KOG1304|consen 288 TLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQT 322 (449)
T ss_pred HHHHHHHHHHHHhhccccccceEEecCCc-cHHHHH
Confidence 34445678999999999998887777544 555554
No 187
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.40 E-value=4.5e+02 Score=29.32 Aligned_cols=41 Identities=10% Similarity=-0.024 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 000799 371 IMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFM 418 (1279)
Q Consensus 371 L~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LNIyfV 418 (1279)
++|-+.++..++|.|+| +.++.+.++|....+++++-+-.+
T Consensus 119 l~Lal~~~~~iyfl~~K-------~~~~~rA~~~~~~~L~~G~~lGs~ 159 (194)
T PF11833_consen 119 LQLALGLGACIYFLNRK-------ERKLGRAFLWTLGGLVVGLILGSL 159 (194)
T ss_pred hHHHHHHHHHHHHHHHh-------cchHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777788888876 456677777777766666544333
No 188
>PF06011 TRP: Transient receptor potential (TRP) ion channel; InterPro: IPR010308 This family consists of hypothetical proteins of unknown function found in fungi.
Probab=23.38 E-value=1.4e+03 Score=27.91 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000799 441 ALPFAVFLITTFTSLCLMLWLATTPLRS 468 (1279)
Q Consensus 441 ~~~~~v~~~~~~~yl~f~lyL~~~pl~s 468 (1279)
+++++++++=+++.+++++.+++.-+.+
T Consensus 386 ~vg~vi~~i~~~v~~~~~i~~~~~~~~~ 413 (438)
T PF06011_consen 386 VVGYVIIIINAIVLLILFILIIVSTIIS 413 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776666666666665544433
No 189
>TIGR02854 spore_II_GA sigma-E processing peptidase SpoIIGA. Members of this protein family are the stage II sporulation protein SpoIIGA. This protein acts as an activating protease for Sigma-E, one of several specialized sigma factors of the sporulation process in Bacillus subtilis and related endospore-forming bacteria.
Probab=23.22 E-value=7.7e+02 Score=28.81 Aligned_cols=12 Identities=42% Similarity=0.609 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 000799 67 AAIFCQYLSARI 78 (1279)
Q Consensus 67 ma~llQeLSARL 78 (1279)
|-+++-.+++|+
T Consensus 15 ~d~~LL~~t~~~ 26 (288)
T TIGR02854 15 IDYFLLYLTART 26 (288)
T ss_pred HHHHHHHHHHHH
Confidence 335666666553
No 190
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=23.03 E-value=1.6e+03 Score=28.40 Aligned_cols=33 Identities=9% Similarity=0.218 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 000799 240 HDHFFAILCIFSGIYMVNYVLMNSAANLFYSTG 272 (1279)
Q Consensus 240 ~D~~~gil~il~gsfLINlaImivaAavfygtG 272 (1279)
.-|+++..++.+|+.+.++.|+++-+-+-.+.|
T Consensus 124 ~~H~~~t~~VAiGt~~Sa~wIl~aNsWMqtP~G 156 (457)
T COG1271 124 KLHLLSTWLVAIGTNLSAFWILAANSWMQTPVG 156 (457)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCe
Confidence 345666655666777776777666665555555
No 191
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=23.01 E-value=2e+03 Score=29.52 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=20.6
Q ss_pred HHhccccccCCCchHHHHHHHHHHHHHHHHHH
Q 000799 383 VASSRQIMGVHKISQYHEFLVLITFMGMLGLK 414 (1279)
Q Consensus 383 LtNsR~IMGe~rnS~~lnILawli~llIi~LN 414 (1279)
.-+..+--|++=+....+++..+.+.=++.++
T Consensus 652 ~~~~~es~G~~w~~al~qiivGl~l~qv~l~g 683 (827)
T COG5594 652 SNHSPESGGGYWPRALFQIIVGLYLFQVCLLG 683 (827)
T ss_pred cCCCcccCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33445556677777777777766666666555
No 192
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.94 E-value=1.8e+03 Score=28.88 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000799 403 VLITFMGMLGLKLIFMVEMI 422 (1279)
Q Consensus 403 awli~llIi~LNIyfVi~~l 422 (1279)
+.+.-...+++-++|+++.+
T Consensus 492 ~GilPFg~ifIELfFI~~Si 511 (628)
T KOG1278|consen 492 AGILPFGAIFIELFFILSSI 511 (628)
T ss_pred hcccchHHHHHHHHHHHHHH
Confidence 33333444555555665554
No 193
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=22.89 E-value=1.4e+03 Score=27.79 Aligned_cols=63 Identities=10% Similarity=0.172 Sum_probs=38.9
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHH
Q 000799 86 LAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLMG-VELSTCVFLAAADAILFP 148 (1279)
Q Consensus 86 LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLfG-IPL~~gVLITav~t~LLL 148 (1279)
|.+..+..+|+...+++.+.+.++++.+.++-+...+-=++-++. +|...+++++.+.++++.
T Consensus 257 l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia 320 (378)
T TIGR00796 257 LSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVA 320 (378)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 344555566776677777777777777776666555555555543 566666666666555544
No 194
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=22.39 E-value=6.2e+02 Score=31.54 Aligned_cols=103 Identities=21% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhh------CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Q 000799 99 CVFIGVQTELSVILLDLTM----------VLGIAHGLNLLM------GVELSTCVFLAAADAILFPFFAGQLENYKAKLL 162 (1279)
Q Consensus 99 ~~~LwI~aeLAiIaaDIaE----------VIGiAIALnLLf------GIPL~~gVLITav~t~LLL~lgsY~g~rklE~l 162 (1279)
++++..+..++...+.+-. ++|.|+++..++ +++..++-++.++.|.+++.+......+..+.-
T Consensus 301 giLFI~LTF~~fflfE~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~ 380 (430)
T PF06123_consen 301 GILFIGLTFLAFFLFELLSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRG 380 (430)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhccccccccCCChHHHHHHHh
Q 000799 163 WICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFSGDSAFSIMSLL 208 (1279)
Q Consensus 163 i~lLV~IM~LaFVi~l~is~Pd~~eV~~GLVP~lp~~sl~~aVALI 208 (1279)
..+.+++++.|.+.+++.+-+--+++-|-+ .++.++|++
T Consensus 381 -~~~~~~L~~LY~~Ly~lLq~EdyALL~GSl------~LF~iLa~v 419 (430)
T PF06123_consen 381 -LIFAGLLAALYGFLYVLLQSEDYALLMGSL------LLFIILALV 419 (430)
T ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHHHHHH
No 195
>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.32 E-value=1.8e+03 Score=28.79 Aligned_cols=152 Identities=22% Similarity=0.308 Sum_probs=70.8
Q ss_pred HHHhhhhHHHHHhhhccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHhhcCchhHHH
Q 000799 22 RLVPAVLPVLLISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVF 101 (1279)
Q Consensus 22 klLa~LGPGfLvAaAyIDPGnIaT~lQAGA~fGY~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl~Re~Ygk~~~~~ 101 (1279)
-+...++-=+..+.|.+-|.+=-+-+.+ .+++-.+++++-=+.++|+--.+ +|+.|...
T Consensus 340 ~l~M~~vti~fA~lGflSPs~RGsLmT~----------~~~l~v~~G~~agY~s~rlyk~~-----------~g~~wk~~ 398 (628)
T KOG1278|consen 340 LLGMILVTIFFACLGFLSPSSRGSLMTA----------MVLLFVFMGFVAGYVSARLYKTF-----------KGREWKRN 398 (628)
T ss_pred hhHHHHHHHHHHHhccCCccccccHHHH----------HHHHHHHHHHhhhhhhhhhHhhh-----------cCCcchhh
Confidence 3444455556666677777542222111 13334445555555566654433 45545443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-CChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 102 IGVQTELSVILLDLTMVLGIAHGLNLLM-GVELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 180 (1279)
Q Consensus 102 LwI~aeLAiIaaDIaEVIGiAIALnLLf-GIPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~i 180 (1279)
++..+.+. =+-+.++...+|.++ |-.--.++++.....+++||++ ..+=++|+..++-
T Consensus 399 ~~lta~l~-----PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~----------------isVPLsf~G~y~g 457 (628)
T KOG1278|consen 399 AILTAFLF-----PGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFG----------------ISVPLSFVGGYFG 457 (628)
T ss_pred HHhhhhhc-----chHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHH----------------hhhhHHHhhHHhh
Confidence 33222111 011224455566554 3222233444444444444432 1234555555443
Q ss_pred h-CCChhh-hccccccc-cCCChHHH--HHHHhcccchhH
Q 000799 181 S-QPEIPL-SVNGMLTK-FSGDSAFS--IMSLLGASMMPH 215 (1279)
Q Consensus 181 s-~Pd~~e-V~~GLVP~-lp~~sl~~--aVALIGATIMPh 215 (1279)
. +|.+.. +-..-+|+ +|...+++ ..+++++-|-|.
T Consensus 458 ~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPF 497 (628)
T KOG1278|consen 458 FKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPF 497 (628)
T ss_pred ccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccch
Confidence 2 354432 32233564 67666665 677777777776
No 196
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=22.21 E-value=1.3e+03 Score=27.08 Aligned_cols=23 Identities=4% Similarity=-0.074 Sum_probs=15.8
Q ss_pred CCccccccccCCCCchhHHHHHh
Q 000799 3 STNMDAELANSNYQSGVLYRLVP 25 (1279)
Q Consensus 3 ~~nme~~~~~~~~~~~~~rklLa 25 (1279)
|.||.+.+......+..|+.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~ 24 (394)
T PRK10213 2 SEFIAENRGADAITRPNWSAVFS 24 (394)
T ss_pred CccccCCCCCccchhhHHHHHHH
Confidence 67888777666666677776443
No 197
>PF12821 DUF3815: Protein of unknown function (DUF3815); InterPro: IPR024528 This domain is found in uncharacterised predicted membrane proteins.
Probab=22.19 E-value=4.2e+02 Score=27.07 Aligned_cols=79 Identities=14% Similarity=0.193 Sum_probs=40.8
Q ss_pred HHHHHHHhhCChh--HHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHH---hhCCChhhhccccccc
Q 000799 121 IAHGLNLLMGVEL--STCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL---ISQPEIPLSVNGMLTK 195 (1279)
Q Consensus 121 iAIALnLLfGIPL--~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~---is~Pd~~eV~~GLVP~ 195 (1279)
.++++.++|..|. +..+.+.+..+++.-++....+ .......+++.+++.++.+.+ .-.|...-++.|++|-
T Consensus 9 ~~~~fai~f~~~~r~l~~~~l~g~~~~~v~~~~~~~~---~~~~~a~f~aa~~vg~~~~~~ar~~~~P~~v~~vpgiipL 85 (130)
T PF12821_consen 9 AAIGFAILFNAPRRALPWAGLIGALGWLVYLLLSAFG---LGSFVATFVAAFVVGLLAELFARRLKAPATVFIVPGIIPL 85 (130)
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHhccCchHHhhccchhee
Confidence 3556777887753 4444555666666544332211 112223333444444443333 2345555566888888
Q ss_pred cCCChHH
Q 000799 196 FSGDSAF 202 (1279)
Q Consensus 196 lp~~sl~ 202 (1279)
+|+...|
T Consensus 86 VPG~~~y 92 (130)
T PF12821_consen 86 VPGSLAY 92 (130)
T ss_pred CCcHHHH
Confidence 8886554
No 198
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=21.80 E-value=3.3e+02 Score=27.43 Aligned_cols=35 Identities=14% Similarity=0.162 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCChhhhccccccccC
Q 000799 163 WICTAGIILLSYVLGVLISQPEIPLSVNGMLTKFS 197 (1279)
Q Consensus 163 i~lLV~IM~LaFVi~l~is~Pd~~eV~~GLVP~lp 197 (1279)
...++++...+.+....-..-.-..+.+|.+|+-|
T Consensus 57 ~S~llgv~g~s~lWsI~ElfeQ~kRV~kGWFP~NP 91 (94)
T PF14898_consen 57 WSALLGVLGFSCLWSIGELFEQEKRVEKGWFPKNP 91 (94)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCC
Confidence 34455666666665544333233356677777654
No 199
>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response. MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.
Probab=21.67 E-value=1.2e+02 Score=31.58 Aligned_cols=54 Identities=11% Similarity=0.186 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCCCcccccccCcchhhcccchhhhhc
Q 000799 442 LPFAVFLITTFTSLCLMLWLATTPLRSASSRNNAPDWSWEFQRAETFTEREEDNSKEARY 501 (1279)
Q Consensus 442 ~~~~v~~~~~~~yl~f~lyL~~~pl~s~s~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 501 (1279)
++-++-.++-++.++|++|++++|+.....+.+.. +.+.|....|+..++|++-
T Consensus 70 yG~Fl~a~I~FlIiA~vvFlivk~~nk~~~~~~~~------~~~~~~~~~~~~ll~eIrd 123 (128)
T PF01741_consen 70 YGAFLNALINFLIIAFVVFLIVKPINKLKKKEEKE------EAEAPAPKTCEELLTEIRD 123 (128)
T ss_dssp HCHHHHHHHHHHHHHHHHHHCHHHHHHCHHTT-S----------H--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc------ccCCCCCCchHHHHHHHHH
Confidence 55566667778889999999999988774333322 1123334455556666553
No 200
>PRK12438 hypothetical protein; Provisional
Probab=21.66 E-value=6.3e+02 Score=34.67 Aligned_cols=111 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---C--
Q 000799 57 LVALMLVFNFAAIFCQYLSARIAVVT-GKDLAQICGEEYDKWTCVFIGVQTELSVILLDLTMVLGIAHGLNLLM---G-- 130 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLSARLGvVT-Gk~LAEl~Re~Ygk~~~~~LwI~aeLAiIaaDIaEVIGiAIALnLLf---G-- 130 (1279)
|+.+++++.++.++..++-.-+.+.. |..+....|.| +..++.+++.+-.+++-+. -..||+ |
T Consensus 175 l~~~~~~~~i~~~~~~yl~g~irl~~~~~~~s~~ar~h----L~vl~~~~~ll~A~~ywLd-------Ry~LL~s~~g~~ 243 (991)
T PRK12438 175 LFVAVVLAFLASLLTHYLFGGLRLTTGRGMLTQAARVQ----LAVFAGAFVLLKAVAYWLD-------RYELLSSGRKEP 243 (991)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCcccCCHHHHHH----HHHHHHHHHHHHHHHHHHh-------hhhheecCCCCc
Q ss_pred -------------ChhHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 131 -------------VELSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVLI 180 (1279)
Q Consensus 131 -------------IPL~~gVLITav~t~LLL~lgsY~g~rklE~li~lLV~IM~LaFVi~l~i 180 (1279)
+|......+.+++|.++++..-. .|+.+...+.+..+++.+.++..+.
T Consensus 244 ~~~GAgYTDv~a~LPa~~iL~~ia~i~Av~f~~~i~--~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 244 TFTGAGYTDINAVLPAKLILVAIAVLCAVAFFAAIF--LRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred eEecCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HhcchhHHHHHHHHHHHHHHHHHHH
No 201
>PRK09928 choline transport protein BetT; Provisional
Probab=21.57 E-value=2e+03 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.4
Q ss_pred HHH-HHHHHHHhhhhhhccccc
Q 000799 687 RRQ-LAGVLDEFWGQLYDYHGQ 707 (1279)
Q Consensus 687 rrq-la~~ldefwg~l~d~hg~ 707 (1279)
|+| ++.|||.|=.||.=.|-+
T Consensus 645 ~~qii~dil~qyer~l~~l~~~ 666 (679)
T PRK09928 645 KEQVINDILDQYERHLNFLHLH 666 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 445 577999998888777744
No 202
>PF13722 DUF4161: C-terminal domain on CstA (DUF4161)
Probab=21.21 E-value=9.6e+02 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.007 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhhhC
Q 000799 298 FVLVLFFSNQIIAVNWNLSGQVVLQDFLR 326 (1279)
Q Consensus 298 FAIGLLAAGqSSTITgTlAGq~VmeGFL~ 326 (1279)
.+++..+-..+|.=|++=.+.++++++++
T Consensus 11 a~l~v~~f~lTtlDTa~Rl~R~~~~E~~~ 39 (127)
T PF13722_consen 11 AILFVAAFALTTLDTATRLARYIIQELFG 39 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444456666777778899999988
No 203
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=21.09 E-value=1.4e+03 Score=26.89 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=19.5
Q ss_pred HHHHHHHhhccchHHHHHHHHHHHHHhHHHHH
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVN 312 (1279)
Q Consensus 281 Aa~aLeplLGG~~A~~LFAIGLLAAGqSSTIT 312 (1279)
..+..+..+| +++..+.++.++........+
T Consensus 61 ~~~~~~~~~G-~~~g~~~~~~~~~~~~~~~~a 91 (381)
T TIGR00837 61 FNTIAKDLLG-KTGNIIAGLSLLFVLYILTYA 91 (381)
T ss_pred HHHHHHHHhC-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777 677777777666665554444
No 204
>PHA03242 envelope glycoprotein M; Provisional
Probab=21.06 E-value=6.7e+02 Score=31.32 Aligned_cols=51 Identities=8% Similarity=0.116 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHH
Q 000799 364 FTQVMVAIMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLK 414 (1279)
Q Consensus 364 ~aQVl~sL~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LN 414 (1279)
..+++.+.+--|++++++++..-+-+.-+|..-.+---++.++...++++.
T Consensus 252 ~~~~v~~ai~~F~vL~ii~liv~E~vL~~Yv~vl~G~~lG~lia~~~l~~p 302 (428)
T PHA03242 252 LPGTLVCLTAVFALLVVLLLVVVEGVLSHYVRVLPGPHLGALVAAGIVGVA 302 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHH
Confidence 445666666677778888775555444444333322233433444444333
No 205
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=20.86 E-value=2e+03 Score=28.59 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHhcCCcHHHHHHhhcCchhHHHH
Q 000799 57 LVALMLVFNFAAIFCQYLSARI----AVVTGKDLAQICGEEYDKWTCVFI 102 (1279)
Q Consensus 57 LLWVLLLStIma~llQeLSARL----GvVTGk~LAEl~Re~Ygk~~~~~L 102 (1279)
.+|.+.+-.=++|++.-|-|-- |+ .+|..+.++..+|+..++.
T Consensus 62 i~WtLtlIVTiKYv~~vlRADN~GEGGi---lsL~aL~~~~~~~~~~~l~ 108 (627)
T COG3158 62 IIWTLTLIVTIKYVLFVLRADNNGEGGI---LSLMALARRAAPRRTALLI 108 (627)
T ss_pred HHHHHHHHHHHhhheeEEecCCCCCchh---hhHHHHHHhhcCCCchhhh
Confidence 5677777777788776554332 22 2477788887777665543
No 206
>PRK10692 hypothetical protein; Provisional
Probab=20.86 E-value=4e+02 Score=26.61 Aligned_cols=59 Identities=14% Similarity=0.066 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000799 396 SQYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRS 468 (1279)
Q Consensus 396 S~~lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s 468 (1279)
...-|++..+..++|++--.|.+++.++. |.+ |-.+.+ ..++ -.|++.++||+---+-.
T Consensus 7 ~~~GN~lMglGmv~Mv~gigysi~~~i~~-------L~L----p~~~~~--gal~-~IFiGAllWL~GArigG 65 (92)
T PRK10692 7 SLLGNVLMGLGLVVMVVGVGYSILNQLPQ-------LNL----PQFFAH--GALL-SIFVGALLWLAGARVGG 65 (92)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhccc-------CCc----hHHHHh--hHHH-HHHHHHHHHHhcccccC
Confidence 34568888888888888777888888762 211 111212 2223 37789999998655443
No 207
>PRK12363 phosphoglycerol transferase I; Provisional
Probab=20.73 E-value=4.3e+02 Score=34.82 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHhccccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000799 371 IMLPSSVIPLFRVASSRQIMGVHKISQYHEFLVLITFMGMLGLKLIFMVEMIFGN 425 (1279)
Q Consensus 371 L~LPFaLIPLL~LtNsR~IMGe~rnS~~lnILawli~llIi~LNIyfVi~~lfg~ 425 (1279)
++|.++++..+.+++.| +...=+.++++++++...+++...++|+
T Consensus 5 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~f~G~ 49 (703)
T PRK12363 5 LLLSLLLLLWLLVASPR----------LAWLKAGLLSLFLLLLSAWGLVDRLSGD 49 (703)
T ss_pred HHHHHHHHHHHHHhcch----------hHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 34556666666665533 3333344566666767777777777876
No 208
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=20.70 E-value=1.2e+03 Score=26.50 Aligned_cols=21 Identities=14% Similarity=0.169 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 000799 356 EGVYQLLIFTQVMVAIMLPSS 376 (1279)
Q Consensus 356 ~~~vqLLI~aQVl~sL~LPFa 376 (1279)
+..+.++++.|++.+++..++
T Consensus 181 ~~~~~~~i~~~a~gGllva~v 201 (244)
T PF04142_consen 181 SWWVWIVIFLQAIGGLLVAFV 201 (244)
T ss_pred chHHHHHHHHHHHhhHHHHHH
Confidence 345667777777777765443
No 209
>PF10136 SpecificRecomb: Site-specific recombinase; InterPro: IPR011385 This group represents a site-specific recombinase Gcr. Please see the following relevant reference: [].
Probab=20.68 E-value=2e+03 Score=28.69 Aligned_cols=31 Identities=19% Similarity=0.252 Sum_probs=18.9
Q ss_pred hhccccccccCCChHHHHHHHhcccch---hHHH
Q 000799 187 LSVNGMLTKFSGDSAFSIMSLLGASMM---PHNF 217 (1279)
Q Consensus 187 eV~~GLVP~lp~~sl~~aVALIGATIM---Phnl 217 (1279)
.+..|+.-.++-+.-|++|=++|.|+. |-+.
T Consensus 356 ~f~~~~~~slNYa~gFvlI~llhfTvATKQPAMT 389 (643)
T PF10136_consen 356 PFWEGFLASLNYALGFVLIHLLHFTVATKQPAMT 389 (643)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhcCChHhh
Confidence 344444444444445678999999887 5544
No 210
>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=20.61 E-value=1.6e+03 Score=27.47 Aligned_cols=35 Identities=11% Similarity=0.164 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHH
Q 000799 55 FDLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQI 89 (1279)
Q Consensus 55 Y~LLWVLLLStIma~llQeLSARLGvVTGk~LAEl 89 (1279)
+.+++.+++..++.+..|..+-=++-=-.+.-.|.
T Consensus 187 ~~~~~~ll~~~~~~~~~~~~~~sva~EKe~rtlE~ 221 (407)
T COG1668 187 VAILIFLLFFIPLSYAGQMVADSVAGEKERRTLEV 221 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhh
Confidence 44666677777777777666554444333333333
No 211
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.57 E-value=1.8e+03 Score=28.03 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 357 GVYQLLIFTQVMVAIMLPSSVIPLFRVAS 385 (1279)
Q Consensus 357 ~~vqLLI~aQVl~sL~LPFaLIPLL~LtN 385 (1279)
+...++++...+.++..+.....+-.+..
T Consensus 114 ~~~e~li~GR~i~Gl~~gl~~~~~pmyl~ 142 (485)
T KOG0569|consen 114 PSFEMLILGRLIVGLACGLSTGLVPMYLT 142 (485)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 35788999999999998888765554433
No 212
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=20.52 E-value=1.3e+03 Score=26.53 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=19.5
Q ss_pred HHHhHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000799 51 AHFGFDLVALMLVFNFA-AIFCQYLSARI 78 (1279)
Q Consensus 51 A~fGY~LLWVLLLStIm-a~llQeLSARL 78 (1279)
.+.||..++.++++.++ +=-.|.++..+
T Consensus 38 ~~~G~s~~e~~lmS~~iyAGasQfv~i~L 66 (238)
T COG1296 38 VALGFSPLEAILMSLLIYAGASQFVAIGL 66 (238)
T ss_pred HHcCCcHHHHHHHHHHHHccHHHHHHHHH
Confidence 36789999998888654 33566666555
No 213
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=20.46 E-value=6.1e+02 Score=28.31 Aligned_cols=31 Identities=13% Similarity=0.088 Sum_probs=21.8
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000799 393 HKISQYHEFLVLITFMGMLGLKLIFMVEMIF 423 (1279)
Q Consensus 393 ~rnS~~lnILawli~llIi~LNIyfVi~~lf 423 (1279)
|-.++...+.+.+..+++++.+++.+++.+.
T Consensus 52 yG~~r~E~l~~l~~~~~l~~~~~~~~~~si~ 82 (268)
T TIGR01297 52 FGHGRAEILAALLNGLFLVVVALFILYEAIE 82 (268)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777788777777766653
No 214
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=20.28 E-value=3.8e+02 Score=26.62 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCccchhHHHHHHHHHHHHHHHHHHHHhhccc
Q 000799 397 QYHEFLVLITFMGMLGLKLIFMVEMIFGNSDWVGNLRWNSGGTVALPFAVFLITTFTSLCLMLWLATTPLRS 468 (1279)
Q Consensus 397 ~~lnILawli~llIi~LNIyfVi~~lfg~s~w~~~l~~~~~~~~~~~~~v~~~~~~~yl~f~lyL~~~pl~s 468 (1279)
..-|++..+..++|++--.|.+++.++ +|.+ |-.+.+ .. +...|++.++||+---+-.
T Consensus 8 ~~GN~lMglGmv~Mv~gigysi~~~~~-------~L~L----p~~~~~--ga-l~~IFiGAllWL~GARigG 65 (89)
T PF10762_consen 8 LLGNVLMGLGMVVMVGGIGYSILSQIP-------QLGL----PQFLAH--GA-LFSIFIGALLWLVGARIGG 65 (89)
T ss_pred HHhhHHHHHhHHHHHHhHHHHHHHhcc-------cCCC----cHHHHh--hH-HHHHHHHHHHHHhcccccC
Confidence 456888888888888777788888875 2211 111222 12 2347789999998654433
Done!