Query 000799
Match_columns 1279
No_of_seqs 230 out of 1318
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 18:06:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000799.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_567-571//hhsearch_pdb/000799hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jln_A MHP1; hydantoin, transp 1.0 1 1 86.4 37.2 330 31-383 34-381 (501)
2 3dh4_A Sodium/glucose cotransp 1.0 1 1 75.7 33.7 350 33-387 31-421 (530)
3 2xq2_A Sodium/glucose cotransp 1.0 1 1 68.4 40.6 118 34-154 61-183 (593)
4 3l1l_A Arginine/agmatine antip 1.0 1 1 57.2 40.2 40 281-321 262-301 (445)
5 3gia_A Uncharacterized protein 1.0 1 1 53.5 38.3 40 281-321 260-299 (444)
6 4djk_A Probable glutamate/gamm 1.0 1 1 51.3 38.1 85 37-128 26-117 (511)
7 2a65_A Leutaa, Na(+):neurotran 1.0 1 1 34.9 35.1 122 291-420 337-470 (519)
8 4ain_A Glycine betaine transpo 1.0 1 1 28.3 14.6 50 34-85 35-90 (539)
9 2lam_A Cyclotide CTER M; insec 1.0 1 1 19.6 0.9 12 1227-1238 2-13 (29)
10 2gj0_A Cycloviolacin O14; cycl 1.0 1 1 19.3 -1.0 13 1226-1238 2-14 (31)
No 1
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=1.00 E-value=1 Score=86.38 Aligned_cols=330 Identities=9% Similarity=-0.003 Sum_probs=157.6
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 9776632365448898898997867---8999999999999999999988897509769999971318515889999999
Q 000799 31 LLISIGYVDPGKWAVIIEGGAHFGF---DLVALMLVFNFAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTE 107 (1279)
Q Consensus 31 lLvSiAyIDPGnIaT~lQAGA~FGY---~LLWVLLLatIi~iilQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~ae 107 (1279)
.+...+-+..+++.......+ |. +-++.+++++++..++..+.+++|..+|.......|..||++.+.+..+...
T Consensus 34 ~~W~g~~~~i~~~~~Ga~~~~--GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~ 111 (501)
T 2jln_A 34 AIWFAMAIQVAIFIAAGQMTS--SFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKA 111 (501)
T ss_dssp HHHHHHHCSTHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999988999999998835--868999999999999999999999868874519974553484135158999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HCCH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 999999999999999999985----0881-68999999999999998404135799999999999999999998898-63
Q 000799 108 LSVILLDLTMVLGIAHGLNLL----MGVE-LSTCVFLAAADAILFPFFAGQLENYKAKLLWICTAGIILLSYVLGVL-IS 181 (1279)
Q Consensus 108 LAiIasDIaEVIGtAIALnLL----FGIP-L~iGVlITav~tllLL~lgsy~g~RKlE~li~vLVgiM~LsFVi~lf-is 181 (1279)
+..++-..-+....+.+++.+ +|++ .++++++..+..+++.+++ +...++++++...++.++.+.+++.++ ..
T Consensus 112 i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~G-~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~ 190 (501)
T 2jln_A 112 LLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFYG-ITFIRWMNVFASPVLLAMGVYMVYLMLDGA 190 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999999986186158999999999999999918-999999999999999999999999999846
Q ss_pred CCCHHHHCCCCCCCCCCCHHHHHHHH-HCCCCHHHHHHHHHHHHHHCCCCCCCC--CHHHHH---HHHHHHHHHHHHHHH
Q ss_conf 79822230431346687819999998-636511499998677553035665520--000034---799999999999999
Q 000799 182 QPEIPLSVNGMLTKFSGDSAFSIMSL-LGASMMPHNFYLHSSIVRRHQGQVNIS--KGALCH---DHFFAILCIFSGIYM 255 (1279)
Q Consensus 182 ~Pd~~evl~GLVP~lpg~sl~~aVAL-IGATIMPhnlYLHSaLVqsR~~~~~~s--~~a~r~---D~~isil~vligsfI 255 (1279)
+.....+.. ..|....-+...++.+ +|..+ ++..+. +-+ .|.-+++.. ++.... ..+.+. +.|.++
T Consensus 191 g~~~~~~~~-~~~~~~~~~f~~ai~~~~~~~~-~~~~~~-~Dy--sRy~~~~~~~~~~~~~~~~~~~~~g~---~lG~~i 262 (501)
T 2jln_A 191 DVSLGEVMS-MGGENPGMPFSTAIMIFVGGWI-AVVVSI-HDI--VKECKVDPNASREGQTKADARYATAQ---WLGMVP 262 (501)
T ss_dssp TCCHHHHTT-CCCSSCCSCHHHHHHHHHTTTH-HHHTTT-HHH--HTTBCCCTTCCHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CCCCHHHHC-CCCCCCHHHHHHHHHHHHHHHH-HHHHCC-CCC--CCCCCCCCCCCCCCHHHCCCHHHHHH---HHHHHH
T ss_conf 876202430-6886424799999999999999-998526-763--34178975421110221120389999---899999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHH-HHHHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCC
Q ss_conf 999999999985302896446789899999996221059-99999-9999987687898-89779999975417986773
Q 000799 256 VNYVLMNSAANLFYSTGLVLLTFQDAMSLMEQVFRSPVV-PFAFV-LVLFFSNQIIAVN-WNLSGQVVLQDFLRLDIPGW 332 (1279)
Q Consensus 256 INlaIIivaAavLygtGi~V~tl~dAa~lLepvlGg~~A-~iIFa-IGLLAAGqSSTIT-gTlAGq~VmeGFL~lr~~~w 332 (1279)
.+..+..+++..-.. ....+. ..++...+.++.. ..+.. +.++.+..++.+. ..|+....++.++...++
T Consensus 263 ~~~~~~~lG~~~~~~--~~~~dp---~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~~~~i~-- 335 (501)
T 2jln_A 263 ASIIFGFIGAASMVL--VGEWNP---VIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFT-- 335 (501)
T ss_dssp HHHHHHHHHHHHHHH--HSCSCH---HHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHSTTTCC--
T ss_pred HHHHHHHHHHHHHHH--CCCCCH---HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--
T ss_conf 999999999999874--022689---9999997134059999999999999999999771188899999994866666--
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 277899999999999999861852379999999999998888899999999
Q 000799 333 LHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMVAIMLPSSVIPLFRV 383 (1279)
Q Consensus 333 ~rrLitRlIAIIPALiVai~~G~~gl~~LLIisQVI~aLlLPFAlIPLL~l 383 (1279)
++..+.+++++..+ +.. .+ ....+..|...+..++-|...|.+.-+
T Consensus 336 -~~~~~~i~~vi~~~-i~~-~~--~~~~f~~FL~~lg~~l~P~~gI~l~Dy 381 (501)
T 2jln_A 336 -FKTGVIVSAVVGLL-MMP-WQ--FAGVLNTFLNLLASALGPLAGIMISDY 381 (501)
T ss_dssp -HHHHHHHHHHHHHH-TCG-GG--THHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH-HHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -25899999999999-999-98--687999999999999999999999999
No 2
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=1.00 E-value=1 Score=75.66 Aligned_cols=350 Identities=12% Similarity=0.096 Sum_probs=152.5
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH-H
Q ss_conf 76632365448898898997867899999999999999-999998889750976999997131851588999999999-9
Q 000799 33 ISIGYVDPGKWAVIIEGGAHFGFDLVALMLVFNFAAIF-CQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS-V 110 (1279)
Q Consensus 33 vSiAyIDPGnIaT~lQAGA~FGY~LLWVLLLatIi~ii-lQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeLA-i 110 (1279)
+.+.++.+..+......+..+|+.-+|..+.+.+..++ ...+..++--..-.++.|..++||++..+.+..+...+. +
T Consensus 31 ~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~ 110 (530)
T 3dh4_A 31 LIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYI 110 (530)
T ss_dssp HHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999879999877999998275999999999999999999999999986991499999998496889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHCCC-HHH
Q ss_conf 9999999999999999850881689999999999999984041357999999999--9999999999889863798-222
Q 000799 111 ILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQLENYKAKLLWIC--TAGIILLSYVLGVLISQPE-IPL 187 (1279)
Q Consensus 111 IasDIaEVIGtAIALnLLFGIPL~iGVlITav~tllLL~lgsy~g~RKlE~li~v--LVgiM~LsFVi~lfis~Pd-~~e 187 (1279)
+......+.+.+..++.++|+|.++++++.++.+.+..+++..+..-.-..+..+ +++++.+.++....+..++ ..+
T Consensus 111 ~~~~~~~l~~~~~~~~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~ 190 (530)
T 3dh4_A 111 FVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFA 190 (530)
T ss_dssp HTHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTC------CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99999999999999999969988999999999999999713439999999999999999999999999998287056899
Q ss_pred -----------HCCCCCCCC-CC-CHHHHHHHHHCCCCHHHHHHHH--HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf -----------304313466-87-8199999986365114999986--77553035665520000034799999999999
Q 000799 188 -----------SVNGMLTKF-SG-DSAFSIMSLLGASMMPHNFYLH--SSIVRRHQGQVNISKGALCHDHFFAILCIFSG 252 (1279)
Q Consensus 188 -----------vl~GLVP~l-pg-~sl~~aVALIGATIMPhnlYLH--SaLVqsR~~~~~~s~~a~r~D~~isil~vlig 252 (1279)
..+-+.+.- +. ........++|........|+. -+.+|.=..-++ .+.+++-..++....+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~laaks--~k~ar~~~~~~~~~~~~~ 268 (530)
T 3dh4_A 191 GVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKS--VSEAQKGIVFAAFLKLIV 268 (530)
T ss_dssp HHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHHHSSSC--HHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHH
T ss_conf 999998507200361368898511036208899999999999897379999989997389--999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC--------------CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-H
Q ss_conf 99999999999998530289--------------64467898999999962210599999999999876878988977-9
Q 000799 253 IYMVNYVLMNSAANLFYSTG--------------LVLLTFQDAMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLS-G 317 (1279)
Q Consensus 253 sfIINlaIIivaAavLygtG--------------i~V~tl~dAa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTlA-G 317 (1279)
.+ -..++..++..++..+ ..+.+...+.-.+.+.+. ++...++..++++|..|+.-....+ +
T Consensus 269 ~~--~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~~lp-~~l~Gl~~a~llAA~mST~ss~l~s~s 345 (530)
T 3dh4_A 269 PF--LVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLP-VGVKGVVFAALAAAIVSSLASMLNSTA 345 (530)
T ss_dssp GG--TTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHTTCC-TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99--999999999999816420000001001247788880159999999833-669999999999999999999999868
Q ss_pred HHHHHHHHCC--C--CCCCHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCC
Q ss_conf 9999754179--8--6773277899999999999999861-85237999999999999888889999-99997333
Q 000799 318 QVVLQDFLRL--D--IPGWLHHATIRIISIVPALYCVWTS-GAEGVYQLLIFTQVMVAIMLPSSVIP-LFRVASSR 387 (1279)
Q Consensus 318 q~VmeGFL~l--r--~~~w~rrLitRlIAIIPALiVai~~-G~~gl~~LLIisQVI~aLlLPFAlIP-LL~ltNsr 387 (1279)
..+.+++.+. + .+......+.|...++-+++...+. ...+...+..+.+.+.++..|-.+.+ ++-+-.+|
T Consensus 346 t~~~~Diy~~~~~~~~s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~llgl~wkr 421 (530)
T 3dh4_A 346 TIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKK 421 (530)
T ss_dssp HHHHHHTCCCCCCSCSCSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHHHHHTTTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999688897528997788899999999999999999999998435799999999999986899999999998188
No 3
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=1.00 E-value=1 Score=68.43 Aligned_cols=118 Identities=8% Similarity=0.115 Sum_probs=74.8
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 66323654488988989978678999999999----99999999998889750976999997131851588999999999
Q 000799 34 SIGYVDPGKWAVIIEGGAHFGFDLVALMLVFN----FAAIFCQYLSARIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 109 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAGA~FGY~LLWVLLLat----Ii~iilQ~LAARLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeLA 109 (1279)
.+.+++...+......+..+|+..+|..+... +++++ +..|+--..-.++.|..++||++..+.+..+...+.
T Consensus 61 ~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~---~~p~~~r~~~~T~~e~l~~Rfg~~~~~~~ai~~l~~ 137 (593)
T 2xq2_A 61 IAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKY---FLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISL 137 (593)
T ss_dssp HGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHT---HHHHHHHTTCCSHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99872589996376999971879999999999999999999---999998579997279999882675079999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf -999999999999999998508816899999999999999840413
Q 000799 110 -VILLDLTMVLGIAHGLNLLMGVELSTCVFLAAADAILFPFFAGQL 154 (1279)
Q Consensus 110 -iIasDIaEVIGtAIALnLLFGIPL~iGVlITav~tllLL~lgsy~ 154 (1279)
.+......+.+.+..++.++|+|.+.++++.++.+.+..+++..+
T Consensus 138 ~~~~~~~~~l~~~~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~ 183 (593)
T 2xq2_A 138 YIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIYGGLS 183 (593)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHH
T ss_conf 9999999999999999999408559999999999999998721437
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=1.00 E-value=1 Score=57.23 Aligned_cols=40 Identities=5% Similarity=-0.136 Sum_probs=29.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996221059999999999987687898897799999
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 281 Aa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
..++++..+| ++...++.++++.+.+++..+..+++..++
T Consensus 262 ~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~ 301 (445)
T 3l1l_A 262 FGDAARMALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTA 301 (445)
T ss_dssp HHHHHHHHHC-TTHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999864-779999999999999999999999979999
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=1.00 E-value=1 Score=53.51 Aligned_cols=40 Identities=10% Similarity=-0.051 Sum_probs=27.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999996221059999999999987687898897799999
Q 000799 281 AMSLMEQVFRSPVVPFAFVLVLFFSNQIIAVNWNLSGQVVL 321 (1279)
Q Consensus 281 Aa~lLepvlGg~~A~iIFaIGLLAAGqSSTITgTlAGq~Vm 321 (1279)
..++..+.+| ++...++.++.+.+.+++..+..+++..++
T Consensus 260 ~~~~~~~~~g-~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 260 LAVAAKPFLG-NLGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999832-789999999999999999999999988999
No 6
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=1.00 E-value=1 Score=51.33 Aligned_cols=85 Identities=12% Similarity=0.096 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 236544889889899786789999999999-----9999999998--889750976999997131851588999999999
Q 000799 37 YVDPGKWAVIIEGGAHFGFDLVALMLVFNF-----AAIFCQYLSA--RIAVVTGKDLAQICGEEYDKWTCVFIGVQTELS 109 (1279)
Q Consensus 37 yIDPGnIaT~lQAGA~FGY~LLWVLLLatI-----i~iilQ~LAA--RLGVVTGk~LAEiiRe~Ygk~~~~lLwI~aeLA 109 (1279)
-++...+... +..|..++...+++.+ .++.+-|++. ++- +| +.-.-.++-+|+.++++.+....+.
T Consensus 26 ~ig~~~~~~~----~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P--~G-G~y~~~~~~~g~~~g~~~g~~~~~~ 98 (511)
T 4djk_A 26 VMAVYEYPTF----ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE--EG-GVFAWVSNTLGPRWGFAAISFGYLQ 98 (511)
T ss_dssp GCCGGGHHHH----HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------CHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC--CC-CHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9843212777----862999999999999999999999999982646679--98-7310387655962899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999999985
Q 000799 110 VILLDLTMVLGIAHGLNLL 128 (1279)
Q Consensus 110 iIasDIaEVIGtAIALnLL 128 (1279)
.+.....+..+.+..+..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ 117 (511)
T 4djk_A 99 IAIGFIPMLYFVLGALSYI 117 (511)
T ss_dssp HHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=1.00 E-value=1 Score=34.89 Aligned_cols=122 Identities=11% Similarity=0.080 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 105999999999998768789889779-9999754179867732778999999999999998618523799999999999
Q 000799 291 SPVVPFAFVLVLFFSNQIIAVNWNLSG-QVVLQDFLRLDIPGWLHHATIRIISIVPALYCVWTSGAEGVYQLLIFTQVMV 369 (1279)
Q Consensus 291 g~~A~iIFaIGLLAAGqSSTITgTlAG-q~VmeGFL~lr~~~w~rrLitRlIAIIPALiVai~~G~~gl~~LLIisQVI~ 369 (1279)
++.-..+|-+-++.||.+|.+...-.- ..+++.+ + +++++-.++..++..+..+.++. .+ .+ .++.+. ...
T Consensus 337 g~~~~~lFF~~l~~agltS~i~~~E~~vt~l~D~~-~--~~R~~~~~~v~~~~fllgl~~~~-~~-~g-~~~~D~--~~~ 408 (519)
T 2a65_A 337 GTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDEL-K--LSRKHAVLWTAAIVFFSAHLVMF-LN-KS-LDEMDF--WAG 408 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C--CCHHHHHHHHHHHHHHHHHHHHH-BT-TH-HHHHHH--HTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHHHHHHHHC-CC-CC-CCHHHH--HHH
T ss_conf 41369999999999999998778657689999751-8--74899999999999999999973-79-98-425799--986
Q ss_pred HHHHHHHHHHHHHH----------HHCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98888899999999----------73332235777448999-99999999999999999999
Q 000799 370 AIMLPSSVIPLFRV----------ASSRQIMGVHKISQYHE-FLVLITFMGMLGLKLIFMVE 420 (1279)
Q Consensus 370 aLlLPFAlIPLL~l----------tNsr~IMG~~rnS~~ln-ILawli~liIi~LNI~fVv~ 420 (1279)
.+.+|+..+....+ ..+-+-|..++.+.+++ .+.+++-++++++=+..++.
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~ 470 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWARE 470 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHEEEEHHHHHHHHHCCCCCCHHHHHHHEEEEHHHHHHHHHHHHHHHH
T ss_conf 79999999999972100343357999987056776689998727745799999999999994
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=1.00 E-value=1 Score=28.29 Aligned_cols=50 Identities=12% Similarity=0.273 Sum_probs=23.0
Q ss_pred HHHCCCCCHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC
Q ss_conf 66323654488988989-----97867899999999999999999998889750-976
Q 000799 34 SIGYVDPGKWAVIIEGG-----AHFGFDLVALMLVFNFAAIFCQYLSARIAVVT-GKD 85 (1279)
Q Consensus 34 SiAyIDPGnIaT~lQAG-----A~FGY~LLWVLLLatIi~iilQ~LAARLGVVT-Gk~ 85 (1279)
..+.++|........+. .+||.-.+|...+..+ +.+--...|+|-+. |++
T Consensus 35 ~~~~~~p~~~~~~~~~~~~~i~~~fgW~y~l~~~~~~~--f~l~lafS~~G~IrLG~~ 90 (539)
T 4ain_A 35 VWGIGFKDSFTNFASSALSAVVDNLGWAFILFGTVFVF--FIVVIAASKFGTIRLGRI 90 (539)
T ss_dssp HHHHTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSGGGSCBSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHEECCCCCEECCCC
T ss_conf 99998789999999999999998876999999999999--888760457775500899
No 9
>2lam_A Cyclotide CTER M; insecticidal peptide, antiviral protein; NMR {Clitoria ternatea}
Probab=1.00 E-value=1 Score=19.57 Aligned_cols=12 Identities=33% Similarity=1.052 Sum_probs=10.1
Q ss_pred CCCCCCCCEECC
Q ss_conf 776799840025
Q 000799 1227 VPHCGDGCIWKV 1238 (1279)
Q Consensus 1227 ~p~cg~~cvw~~ 1238 (1279)
+|.|||.|||-.
T Consensus 2 ~p~CGEsCv~~~ 13 (29)
T 2lam_A 2 LPTCGETCTLGT 13 (29)
T ss_dssp BCTTCCCCSSSC
T ss_pred CCCCCCCEEEEE
T ss_conf 887626556457
No 10
>2gj0_A Cycloviolacin O14; cyclotide, plant protein; NMR {Viola odorata}
Probab=1.00 E-value=1 Score=19.34 Aligned_cols=13 Identities=38% Similarity=1.012 Sum_probs=10.0
Q ss_pred CCCCCCCCCEECC
Q ss_conf 4776799840025
Q 000799 1226 SVPHCGDGCIWKV 1238 (1279)
Q Consensus 1226 ~~p~cg~~cvw~~ 1238 (1279)
++|.|||.|||-.
T Consensus 2 g~p~CGEsC~~~p 14 (31)
T 2gj0_A 2 SIPACGESCFKGK 14 (31)
T ss_dssp BHHHHCBCCSSSC
T ss_pred CCCCCCCCEEEEE
T ss_conf 8786647526355
Done!