Query 000801
Match_columns 1279
No_of_seqs 254 out of 2072
Neff 3.5
Searched_HMMs 46136
Date Mon Apr 1 23:52:58 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0825 PHD Zn-finger protein 99.7 8.5E-18 1.8E-22 198.0 2.3 140 24-179 123-266 (1134)
2 PHA02926 zinc finger-like prot 98.8 8.4E-10 1.8E-14 118.3 1.4 69 11-79 157-239 (242)
3 PHA02929 N1R/p28-like protein; 98.8 3.5E-09 7.6E-14 115.1 4.2 62 14-75 164-232 (238)
4 KOG1244 Predicted transcriptio 98.8 2E-09 4.4E-14 117.5 1.3 58 116-179 274-331 (336)
5 KOG0823 Predicted E3 ubiquitin 98.6 2.7E-08 5.9E-13 107.3 4.0 62 21-83 44-108 (230)
6 PLN03208 E3 ubiquitin-protein 98.6 4E-08 8.6E-13 104.1 5.0 60 22-82 16-91 (193)
7 PF13639 zf-RING_2: Ring finge 98.6 1.2E-08 2.5E-13 83.5 0.8 42 25-66 1-44 (44)
8 PF12678 zf-rbx1: RING-H2 zinc 98.5 7.7E-08 1.7E-12 87.5 2.9 44 23-66 18-73 (73)
9 KOG0317 Predicted E3 ubiquitin 98.4 9.6E-08 2.1E-12 105.7 3.1 52 20-72 235-286 (293)
10 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.7E-07 3.7E-12 78.8 2.2 48 23-71 1-49 (50)
11 PF13923 zf-C3HC4_2: Zinc fing 98.3 1.8E-07 3.9E-12 75.2 1.8 39 27-65 1-39 (39)
12 PF15227 zf-C3HC4_4: zinc fing 98.3 4.3E-07 9.4E-12 75.0 2.6 38 27-65 1-42 (42)
13 cd00162 RING RING-finger (Real 98.3 5.3E-07 1.2E-11 70.7 2.8 44 26-69 1-45 (45)
14 PF00628 PHD: PHD-finger; Int 98.3 1.8E-07 3.9E-12 78.2 0.1 48 125-178 1-50 (51)
15 KOG0320 Predicted E3 ubiquitin 98.2 4.2E-07 9.2E-12 95.2 1.8 49 22-70 129-178 (187)
16 smart00504 Ubox Modified RING 98.2 7E-07 1.5E-11 76.9 2.7 46 25-71 2-47 (63)
17 KOG1512 PHD Zn-finger protein 98.2 5.3E-07 1.2E-11 99.5 1.6 56 116-179 307-363 (381)
18 KOG4443 Putative transcription 98.2 7.6E-07 1.6E-11 106.6 2.4 57 118-180 63-119 (694)
19 TIGR00599 rad18 DNA repair pro 98.1 1.2E-06 2.7E-11 101.4 2.9 49 22-71 24-72 (397)
20 KOG4628 Predicted E3 ubiquitin 98.1 1.4E-06 2.9E-11 99.4 2.7 46 25-70 230-278 (348)
21 PF12861 zf-Apc11: Anaphase-pr 98.1 1.8E-06 3.9E-11 81.6 2.9 48 24-71 21-83 (85)
22 PF00097 zf-C3HC4: Zinc finger 98.1 1.7E-06 3.7E-11 69.4 2.0 39 27-65 1-41 (41)
23 smart00249 PHD PHD zinc finger 98.0 3.5E-06 7.6E-11 67.2 3.2 45 126-176 2-47 (47)
24 KOG0287 Postreplication repair 98.0 2.1E-06 4.6E-11 96.7 1.1 49 22-71 21-69 (442)
25 PF14634 zf-RING_5: zinc-RING 97.9 6.7E-06 1.5E-10 67.9 2.9 42 26-67 1-44 (44)
26 COG5194 APC11 Component of SCF 97.9 5.9E-06 1.3E-10 77.3 1.9 49 24-72 20-83 (88)
27 COG5432 RAD18 RING-finger-cont 97.8 6.5E-06 1.4E-10 91.5 1.9 51 22-73 23-73 (391)
28 smart00184 RING Ring finger. E 97.8 9.9E-06 2.2E-10 61.4 2.2 38 27-65 1-39 (39)
29 KOG2177 Predicted E3 ubiquitin 97.8 7.2E-06 1.6E-10 83.9 1.8 46 21-67 10-55 (386)
30 KOG2164 Predicted E3 ubiquitin 97.8 8.6E-06 1.9E-10 95.9 2.0 47 24-71 186-237 (513)
31 COG5243 HRD1 HRD ubiquitin lig 97.8 1E-05 2.2E-10 92.2 2.2 49 22-70 285-345 (491)
32 COG5540 RING-finger-containing 97.8 1.1E-05 2.5E-10 90.1 2.3 48 22-69 321-371 (374)
33 KOG4299 PHD Zn-finger protein 97.8 8.2E-06 1.8E-10 97.8 1.2 49 125-179 255-305 (613)
34 cd04718 BAH_plant_2 BAH, or Br 97.6 3.5E-05 7.5E-10 79.4 3.4 30 153-182 1-30 (148)
35 PF04564 U-box: U-box domain; 97.6 2.2E-05 4.8E-10 71.3 1.8 50 23-73 3-53 (73)
36 KOG1973 Chromatin remodeling p 97.6 1.7E-05 3.6E-10 88.2 1.2 36 142-179 230-268 (274)
37 KOG0956 PHD finger protein AF1 97.6 2.4E-05 5.2E-10 94.2 2.6 105 124-236 6-115 (900)
38 KOG0802 E3 ubiquitin ligase [P 97.6 1.8E-05 3.8E-10 94.9 0.9 49 21-69 288-340 (543)
39 COG5574 PEX10 RING-finger-cont 97.6 2.4E-05 5.3E-10 86.3 1.6 47 23-70 214-262 (271)
40 KOG0955 PHD finger protein BR1 97.6 3.2E-05 6.8E-10 98.1 2.4 53 121-179 217-269 (1051)
41 KOG4323 Polycomb-like PHD Zn-f 97.5 6.2E-05 1.3E-09 88.7 4.1 50 126-179 171-224 (464)
42 KOG0978 E3 ubiquitin ligase in 97.5 2.8E-05 6E-10 95.1 0.4 52 24-76 643-695 (698)
43 KOG1039 Predicted E3 ubiquitin 97.5 4.9E-05 1.1E-09 87.1 2.2 53 21-73 158-224 (344)
44 KOG2930 SCF ubiquitin ligase, 97.5 3.2E-05 7E-10 75.4 0.5 51 21-71 43-109 (114)
45 KOG1245 Chromatin remodeling c 97.4 3E-05 6.5E-10 101.2 -0.7 51 123-179 1108-1158(1404)
46 COG5034 TNG2 Chromatin remodel 97.3 7.1E-05 1.5E-09 82.4 1.5 36 142-179 232-270 (271)
47 TIGR00570 cdk7 CDK-activating 97.3 0.00014 3E-09 82.4 3.8 50 23-72 2-56 (309)
48 KOG0383 Predicted helicase [Ge 97.3 7.5E-05 1.6E-09 91.7 1.7 49 123-180 47-95 (696)
49 KOG0311 Predicted E3 ubiquitin 97.3 2.9E-05 6.2E-10 88.4 -2.6 49 22-70 41-90 (381)
50 PF13445 zf-RING_UBOX: RING-ty 97.2 0.00012 2.5E-09 61.5 1.1 36 27-63 1-43 (43)
51 KOG1493 Anaphase-promoting com 97.2 7E-05 1.5E-09 69.9 -0.6 48 24-71 20-82 (84)
52 PF14835 zf-RING_6: zf-RING of 97.2 0.00019 4.1E-09 65.2 1.8 45 24-70 7-51 (65)
53 KOG4265 Predicted E3 ubiquitin 97.1 0.00023 5E-09 81.4 2.6 69 2-72 265-338 (349)
54 COG5141 PHD zinc finger-contai 97.1 0.00014 3E-09 85.4 0.7 51 123-179 193-243 (669)
55 KOG0954 PHD finger protein [Ge 96.8 0.00031 6.8E-09 85.7 0.1 100 123-237 271-379 (893)
56 KOG2879 Predicted E3 ubiquitin 96.7 0.0014 3E-08 73.2 4.0 55 19-73 234-290 (298)
57 COG5219 Uncharacterized conser 96.5 0.00071 1.5E-08 84.1 0.7 50 22-71 1467-1524(1525)
58 KOG0828 Predicted E3 ubiquitin 96.5 0.00081 1.8E-08 79.4 0.9 49 22-70 569-634 (636)
59 KOG2660 Locus-specific chromos 96.3 0.00071 1.5E-08 76.9 -1.1 49 24-72 15-63 (331)
60 KOG0804 Cytoplasmic Zn-finger 96.3 0.0021 4.5E-08 75.6 2.2 46 21-68 172-220 (493)
61 KOG4159 Predicted E3 ubiquitin 96.1 0.0024 5.3E-08 74.8 2.1 49 22-71 82-130 (398)
62 KOG0297 TNF receptor-associate 96.1 0.0026 5.7E-08 74.2 2.2 55 22-76 19-73 (391)
63 KOG0824 Predicted E3 ubiquitin 96.1 0.0028 6E-08 71.7 1.8 47 24-71 7-54 (324)
64 KOG1785 Tyrosine kinase negati 95.7 0.0044 9.5E-08 72.0 1.7 49 25-74 370-420 (563)
65 KOG0827 Predicted E3 ubiquitin 95.7 0.0044 9.4E-08 71.9 1.3 43 25-67 5-53 (465)
66 KOG0957 PHD finger protein [Ge 95.5 0.0082 1.8E-07 71.3 2.8 49 125-179 546-598 (707)
67 PF11793 FANCL_C: FANCL C-term 95.4 0.0031 6.7E-08 57.6 -0.7 47 24-70 2-66 (70)
68 PF13831 PHD_2: PHD-finger; PD 95.4 0.0023 4.9E-08 52.1 -1.4 34 142-177 2-36 (36)
69 KOG1734 Predicted RING-contain 95.3 0.0056 1.2E-07 68.4 0.8 50 22-71 222-282 (328)
70 KOG4172 Predicted E3 ubiquitin 95.0 0.0055 1.2E-07 54.6 -0.3 46 25-71 8-55 (62)
71 KOG4692 Predicted E3 ubiquitin 95.0 0.011 2.4E-07 68.0 1.9 55 16-71 414-468 (489)
72 smart00744 RINGv The RING-vari 95.0 0.015 3.3E-07 50.0 2.3 41 26-66 1-49 (49)
73 COG5152 Uncharacterized conser 94.8 0.0095 2.1E-07 64.3 0.6 46 24-70 196-241 (259)
74 KOG1813 Predicted E3 ubiquitin 94.8 0.012 2.6E-07 66.6 1.4 49 24-73 241-289 (313)
75 PF11789 zf-Nse: Zinc-finger o 94.7 0.017 3.6E-07 51.3 1.8 42 23-64 10-53 (57)
76 PHA03096 p28-like protein; Pro 94.6 0.013 2.8E-07 66.3 1.0 43 25-67 179-231 (284)
77 KOG1002 Nucleotide excision re 94.2 0.016 3.5E-07 69.3 0.7 50 20-70 532-586 (791)
78 PF04641 Rtf2: Rtf2 RING-finge 94.0 0.048 1E-06 60.6 3.9 55 21-76 110-167 (260)
79 COG5222 Uncharacterized conser 93.7 0.028 6.1E-07 63.7 1.5 43 25-67 275-318 (427)
80 KOG1645 RING-finger-containing 92.2 0.077 1.7E-06 62.4 2.2 45 24-68 4-54 (463)
81 KOG1473 Nucleosome remodeling 92.0 0.03 6.5E-07 71.7 -1.4 127 22-179 342-479 (1414)
82 KOG4275 Predicted E3 ubiquitin 91.7 0.056 1.2E-06 61.4 0.3 42 24-70 300-342 (350)
83 KOG4299 PHD Zn-finger protein 91.6 0.2 4.2E-06 61.7 4.6 47 25-71 254-308 (613)
84 KOG1941 Acetylcholine receptor 91.1 0.062 1.3E-06 62.9 -0.0 48 23-70 364-416 (518)
85 KOG0826 Predicted E3 ubiquitin 91.1 0.11 2.4E-06 59.8 1.9 50 21-70 297-346 (357)
86 PHA02825 LAP/PHD finger-like p 91.1 0.21 4.5E-06 52.9 3.6 54 20-73 4-62 (162)
87 COG5175 MOT2 Transcriptional r 91.0 0.096 2.1E-06 60.4 1.3 49 22-70 12-64 (480)
88 KOG3039 Uncharacterized conser 90.5 0.22 4.7E-06 55.8 3.4 52 22-73 219-273 (303)
89 KOG4739 Uncharacterized protei 90.3 0.15 3.2E-06 56.7 1.9 48 25-74 4-52 (233)
90 COG5236 Uncharacterized conser 90.0 0.24 5.2E-06 57.5 3.3 58 15-73 52-111 (493)
91 KOG0957 PHD finger protein [Ge 90.0 0.15 3.2E-06 61.3 1.6 51 125-179 121-179 (707)
92 KOG1428 Inhibitor of type V ad 89.5 0.17 3.6E-06 66.1 1.7 55 20-74 3482-3548(3738)
93 PF14570 zf-RING_4: RING/Ubox 89.4 0.26 5.6E-06 43.1 2.3 44 27-70 1-48 (48)
94 KOG1952 Transcription factor N 88.8 0.17 3.6E-06 63.9 1.1 48 22-69 189-246 (950)
95 KOG1814 Predicted E3 ubiquitin 88.7 0.033 7.3E-07 65.4 -4.6 47 22-68 182-238 (445)
96 PF07800 DUF1644: Protein of u 88.4 0.32 6.9E-06 51.5 2.5 51 23-74 1-95 (162)
97 KOG4445 Uncharacterized conser 87.9 0.12 2.6E-06 59.0 -0.9 48 24-71 115-187 (368)
98 PHA02862 5L protein; Provision 87.9 0.31 6.6E-06 51.1 2.0 47 24-72 2-55 (156)
99 KOG2932 E3 ubiquitin ligase in 87.4 0.23 5E-06 57.0 0.9 46 26-73 92-137 (389)
100 KOG0956 PHD finger protein AF1 86.9 0.49 1.1E-05 58.9 3.3 31 42-72 45-75 (900)
101 KOG4185 Predicted E3 ubiquitin 86.8 0.36 7.8E-06 53.8 2.1 45 25-69 4-54 (296)
102 KOG2114 Vacuolar assembly/sort 86.4 0.25 5.4E-06 62.5 0.6 50 18-70 834-883 (933)
103 KOG0298 DEAD box-containing he 86.2 0.18 4E-06 65.9 -0.7 47 22-68 1151-1197(1394)
104 KOG1473 Nucleosome remodeling 85.9 0.41 8.9E-06 62.0 2.1 47 124-179 345-391 (1414)
105 PF10367 Vps39_2: Vacuolar sor 85.3 0.37 8.1E-06 45.4 1.0 32 22-53 76-108 (109)
106 KOG1571 Predicted E3 ubiquitin 84.4 0.43 9.4E-06 55.7 1.2 46 22-71 303-348 (355)
107 KOG1001 Helicase-like transcri 84.0 0.48 1E-05 59.5 1.4 44 25-70 455-500 (674)
108 KOG0825 PHD Zn-finger protein 83.9 0.39 8.4E-06 60.3 0.6 68 1195-1269 1044-1111(1134)
109 KOG3970 Predicted E3 ubiquitin 83.2 0.69 1.5E-05 51.4 2.1 48 22-69 48-104 (299)
110 KOG4443 Putative transcription 82.6 0.38 8.2E-06 59.6 -0.2 56 120-179 15-71 (694)
111 PF14447 Prok-RING_4: Prokaryo 80.8 0.95 2.1E-05 40.7 1.7 45 24-71 7-51 (55)
112 PF15446 zf-PHD-like: PHD/FYVE 80.6 0.85 1.8E-05 48.9 1.5 52 125-179 1-60 (175)
113 KOG1246 DNA-binding protein ju 79.8 1.3 2.9E-05 57.2 3.2 51 122-179 154-204 (904)
114 KOG1701 Focal adhesion adaptor 79.5 0.6 1.3E-05 55.6 0.0 44 22-68 300-343 (468)
115 KOG2034 Vacuolar sorting prote 77.9 0.84 1.8E-05 58.3 0.6 34 22-55 815-849 (911)
116 KOG3268 Predicted E3 ubiquitin 77.4 1.2 2.6E-05 48.2 1.5 50 22-71 163-229 (234)
117 PF02891 zf-MIZ: MIZ/SP-RING z 77.1 1 2.2E-05 39.2 0.7 42 25-67 3-49 (50)
118 KOG0383 Predicted helicase [Ge 76.2 1.9 4E-05 54.6 2.9 37 143-179 188-224 (696)
119 PF05883 Baculo_RING: Baculovi 73.9 1.4 3E-05 45.7 0.9 37 24-60 26-70 (134)
120 PF05290 Baculo_IE-1: Baculovi 71.2 2.4 5.2E-05 44.1 1.8 49 23-71 79-133 (140)
121 PF07227 DUF1423: Protein of u 69.9 3.7 8E-05 49.6 3.2 51 126-179 131-192 (446)
122 KOG4367 Predicted Zn-finger pr 69.3 2 4.4E-05 51.3 1.0 33 22-55 2-34 (699)
123 PF05418 Apo-VLDL-II: Apovitel 68.8 2.1 4.5E-05 40.7 0.7 40 1230-1269 25-71 (82)
124 KOG3002 Zn finger protein [Gen 68.5 2.9 6.2E-05 48.3 1.9 52 19-73 43-94 (299)
125 PF08746 zf-RING-like: RING-li 68.3 3.9 8.4E-05 34.7 2.2 39 27-65 1-43 (43)
126 PF10272 Tmpp129: Putative tra 68.2 3.9 8.5E-05 48.3 3.0 52 20-71 267-352 (358)
127 PF11793 FANCL_C: FANCL C-term 67.6 0.82 1.8E-05 42.0 -2.1 52 125-179 4-64 (70)
128 KOG3053 Uncharacterized conser 67.5 1.8 3.9E-05 49.0 0.1 49 23-71 19-83 (293)
129 KOG3579 Predicted E3 ubiquitin 67.5 2.2 4.8E-05 49.0 0.7 36 21-57 265-304 (352)
130 PF14446 Prok-RING_1: Prokaryo 66.4 3 6.5E-05 37.5 1.2 35 123-162 5-39 (54)
131 PF15446 zf-PHD-like: PHD/FYVE 65.4 7.8 0.00017 41.9 4.2 23 141-163 121-143 (175)
132 KOG4628 Predicted E3 ubiquitin 65.0 3 6.6E-05 49.0 1.3 47 125-180 231-277 (348)
133 COG5220 TFB3 Cdk activating ki 63.1 2.2 4.7E-05 48.0 -0.3 49 22-70 8-64 (314)
134 KOG3800 Predicted E3 ubiquitin 62.7 4.7 0.0001 46.5 2.2 45 26-70 2-51 (300)
135 KOG4718 Non-SMC (structural ma 62.0 3.9 8.5E-05 45.4 1.3 47 25-71 182-228 (235)
136 PF12906 RINGv: RING-variant d 60.6 3.8 8.1E-05 35.3 0.7 39 27-65 1-47 (47)
137 PF04216 FdhE: Protein involve 57.3 3.2 6.8E-05 47.0 -0.3 46 23-69 171-221 (290)
138 KOG1940 Zn-finger protein [Gen 56.8 6.5 0.00014 45.1 2.0 46 22-67 156-204 (276)
139 KOG1100 Predicted E3 ubiquitin 54.9 7.6 0.00016 42.7 2.1 40 27-71 161-201 (207)
140 PLN02436 cellulose synthase A 54.5 10 0.00022 50.2 3.4 54 20-73 32-92 (1094)
141 PF03854 zf-P11: P-11 zinc fin 54.3 6.3 0.00014 35.0 1.1 42 26-69 4-45 (50)
142 KOG4362 Transcriptional regula 54.1 4.2 9.1E-05 51.4 -0.0 47 22-69 19-68 (684)
143 KOG3161 Predicted E3 ubiquitin 53.6 5.2 0.00011 50.1 0.6 40 22-63 9-51 (861)
144 PF12861 zf-Apc11: Anaphase-pr 52.5 6.4 0.00014 38.3 0.9 31 148-179 50-80 (85)
145 PLN02638 cellulose synthase A 52.3 13 0.00029 49.3 3.9 55 19-73 12-73 (1079)
146 KOG1815 Predicted E3 ubiquitin 52.3 9.3 0.0002 45.9 2.4 29 38-67 179-207 (444)
147 KOG0955 PHD finger protein BR1 52.0 13 0.00029 49.2 3.9 42 823-865 956-997 (1051)
148 COG5183 SSM4 Protein involved 51.9 9.4 0.0002 49.0 2.4 58 16-73 4-69 (1175)
149 KOG1632 Uncharacterized PHD Zn 50.0 8.2 0.00018 45.4 1.5 38 143-180 74-114 (345)
150 PF14569 zf-UDP: Zinc-binding 49.8 12 0.00026 36.1 2.2 51 22-72 7-64 (80)
151 PLN02189 cellulose synthase 49.2 13 0.00027 49.3 3.0 54 20-73 30-90 (1040)
152 KOG1512 PHD Zn-finger protein 49.0 5 0.00011 46.2 -0.4 39 141-179 276-317 (381)
153 PLN02400 cellulose synthase 48.1 14 0.00031 49.0 3.2 54 20-73 32-92 (1085)
154 KOG2932 E3 ubiquitin ligase in 47.0 9.4 0.0002 44.6 1.3 35 143-180 89-133 (389)
155 PHA02929 N1R/p28-like protein; 46.7 9.6 0.00021 42.9 1.3 53 122-179 173-225 (238)
156 KOG2817 Predicted E3 ubiquitin 46.6 11 0.00024 45.1 1.8 47 24-70 334-385 (394)
157 COG5574 PEX10 RING-finger-cont 46.5 11 0.00025 43.0 1.9 34 24-57 95-132 (271)
158 PLN02400 cellulose synthase 46.3 14 0.00031 49.0 2.8 54 121-179 34-87 (1085)
159 KOG4430 Topoisomerase I-bindin 46.0 41 0.00088 42.1 6.4 53 22-74 258-313 (553)
160 KOG0954 PHD finger protein [Ge 46.0 9.2 0.0002 48.7 1.1 48 22-69 269-322 (893)
161 PF08343 RNR_N: Ribonucleotide 45.2 4.4 9.5E-05 38.9 -1.4 49 1196-1265 14-65 (82)
162 PRK14559 putative protein seri 45.2 20 0.00043 45.5 3.8 47 125-179 3-50 (645)
163 PF05502 Dynactin_p62: Dynacti 45.2 24 0.00053 43.3 4.4 33 144-181 5-37 (483)
164 smart00249 PHD PHD zinc finger 44.8 13 0.00028 29.6 1.4 40 26-65 1-47 (47)
165 KOG1812 Predicted E3 ubiquitin 44.7 13 0.00028 44.3 2.0 42 23-64 145-195 (384)
166 KOG1815 Predicted E3 ubiquitin 44.1 11 0.00024 45.3 1.4 37 22-58 68-104 (444)
167 KOG1844 PHD Zn-finger proteins 44.0 13 0.00029 44.7 2.0 39 141-180 98-136 (508)
168 PLN02638 cellulose synthase A 44.0 14 0.0003 49.1 2.3 53 122-179 16-68 (1079)
169 KOG1734 Predicted RING-contain 42.5 6 0.00013 45.4 -1.0 56 121-180 222-280 (328)
170 TIGR01562 FdhE formate dehydro 42.5 9.8 0.00021 44.2 0.6 46 23-68 183-233 (305)
171 PF13901 DUF4206: Domain of un 42.4 23 0.0005 38.6 3.3 52 118-179 146-198 (202)
172 PLN02436 cellulose synthase A 42.3 17 0.00038 48.2 2.8 53 122-179 35-87 (1094)
173 KOG0309 Conserved WD40 repeat- 42.2 14 0.0003 47.3 1.8 39 26-64 1030-1069(1081)
174 KOG1973 Chromatin remodeling p 41.8 9.6 0.00021 43.3 0.4 47 22-68 217-268 (274)
175 PF00628 PHD: PHD-finger; Int 40.8 6.4 0.00014 33.2 -0.9 41 26-66 1-49 (51)
176 KOG0824 Predicted E3 ubiquitin 40.6 8.7 0.00019 44.7 -0.2 53 18-70 99-151 (324)
177 KOG3799 Rab3 effector RIM1 and 40.3 9.4 0.0002 40.1 0.0 43 24-71 65-119 (169)
178 PRK03564 formate dehydrogenase 39.0 17 0.00036 42.5 1.7 45 23-67 186-234 (309)
179 PF08746 zf-RING-like: RING-li 37.7 8.9 0.00019 32.6 -0.5 41 126-176 1-43 (43)
180 KOG2068 MOT2 transcription fac 37.3 23 0.0005 41.7 2.5 47 24-70 249-298 (327)
181 TIGR00622 ssl1 transcription f 37.3 22 0.00048 36.3 2.1 42 25-66 56-110 (112)
182 PLN02195 cellulose synthase A 37.3 22 0.00047 47.0 2.5 52 123-179 6-57 (977)
183 PF07975 C1_4: TFIIH C1-like d 37.2 32 0.00069 30.8 2.8 40 27-66 2-50 (51)
184 PLN02915 cellulose synthase A 36.5 26 0.00057 46.5 3.1 53 21-73 12-71 (1044)
185 COG5432 RAD18 RING-finger-cont 36.2 10 0.00022 43.9 -0.5 42 124-179 26-68 (391)
186 PLN02915 cellulose synthase A 35.8 24 0.00051 46.9 2.5 53 122-179 14-66 (1044)
187 PLN02189 cellulose synthase 35.4 25 0.00055 46.7 2.7 53 122-179 33-85 (1040)
188 KOG1812 Predicted E3 ubiquitin 35.4 19 0.00042 42.9 1.5 41 24-65 306-351 (384)
189 PF14569 zf-UDP: Zinc-binding 35.0 9.6 0.00021 36.7 -0.8 53 122-179 8-60 (80)
190 COG5243 HRD1 HRD ubiquitin lig 33.8 10 0.00022 45.2 -1.0 27 149-179 317-343 (491)
191 PF05199 GMC_oxred_C: GMC oxid 31.9 20 0.00044 35.2 0.8 22 674-695 114-135 (144)
192 KOG3113 Uncharacterized conser 30.5 37 0.00081 39.0 2.6 50 22-73 109-161 (293)
193 PF12678 zf-rbx1: RING-H2 zinc 30.4 10 0.00022 35.1 -1.4 26 148-177 48-73 (73)
194 KOG0827 Predicted E3 ubiquitin 30.3 5.6 0.00012 47.4 -3.8 50 24-73 196-248 (465)
195 KOG3039 Uncharacterized conser 28.8 30 0.00064 39.7 1.5 31 24-55 43-73 (303)
196 PF08369 PCP_red: Proto-chloro 27.1 44 0.00096 28.9 1.9 27 843-870 10-36 (45)
197 KOG2807 RNA polymerase II tran 27.0 23 0.00049 41.9 0.2 25 44-68 275-299 (378)
198 KOG3899 Uncharacterized conser 26.5 29 0.00063 40.5 0.9 29 43-71 325-366 (381)
199 KOG1609 Protein involved in mR 26.2 34 0.00073 38.1 1.4 49 24-72 78-136 (323)
200 KOG4218 Nuclear hormone recept 25.8 22 0.00048 42.1 -0.1 47 22-68 13-76 (475)
201 KOG0269 WD40 repeat-containing 25.1 49 0.0011 42.8 2.6 47 24-70 779-828 (839)
202 COG5141 PHD zinc finger-contai 24.7 43 0.00093 41.4 2.0 19 144-162 316-336 (669)
203 COG5540 RING-finger-containing 24.6 19 0.0004 42.2 -1.0 50 123-181 323-372 (374)
204 PLN02195 cellulose synthase A 23.8 59 0.0013 43.3 3.0 47 24-70 6-59 (977)
205 KOG1829 Uncharacterized conser 23.6 26 0.00056 44.1 -0.1 54 118-179 505-559 (580)
206 KOG1632 Uncharacterized PHD Zn 23.4 15 0.00033 43.2 -2.0 52 124-180 240-296 (345)
207 KOG1829 Uncharacterized conser 23.2 27 0.00059 43.9 -0.0 41 23-66 510-557 (580)
208 PHA02926 zinc finger-like prot 22.9 37 0.00079 38.5 0.9 58 122-179 169-228 (242)
209 PF10497 zf-4CXXC_R1: Zinc-fin 22.5 35 0.00075 34.1 0.6 32 148-179 31-70 (105)
210 KOG0978 E3 ubiquitin ligase in 22.4 17 0.00038 46.3 -1.9 26 154-179 662-687 (698)
211 PF07191 zinc-ribbons_6: zinc- 21.7 23 0.0005 33.6 -0.8 43 25-73 2-44 (70)
212 PF15296 Codanin-1_C: Codanin- 21.6 1E+02 0.0022 31.9 3.7 41 833-875 48-88 (121)
213 KOG2807 RNA polymerase II tran 21.5 51 0.0011 39.1 1.7 42 25-66 331-374 (378)
214 PF10497 zf-4CXXC_R1: Zinc-fin 21.4 83 0.0018 31.6 2.9 46 23-68 6-70 (105)
215 PRK14873 primosome assembly pr 20.9 58 0.0013 41.7 2.1 26 517-544 619-644 (665)
216 COG1773 Rubredoxin [Energy pro 20.7 72 0.0016 29.2 2.1 14 165-179 32-45 (55)
217 PF10571 UPF0547: Uncharacteri 20.0 41 0.00088 26.3 0.4 22 48-69 3-24 (26)
No 1
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=99.68 E-value=8.5e-18 Score=197.96 Aligned_cols=140 Identities=22% Similarity=0.491 Sum_probs=96.2
Q ss_pred cccccccccccccc--eeecCCCCcccHhHHhhhccCCCCCCCCCcccceeeeccccccCCC-CcccCcccccCCccchh
Q 000801 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGS-NNIDGDSLSRGEDWSIE 100 (1279)
Q Consensus 24 Dd~CpICLE~f~D~--~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~VPVyD~iGg-e~Idn~sVrrrdD~~IE 100 (1279)
...|+||+..+.+. .....|+|+||..||..|.+...+||+||..|..+.. .+..+. ..+..+++........-
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V---~eS~~~~~~vR~lP~EEs~~~~e~ 199 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKV---LESTGIEANVRCLPSEESENILEK 199 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeee---eccccccceeEecchhhhhhhhhh
Confidence 45688888877654 3345799999999999999999999999999997663 333343 33333333222111000
Q ss_pred hcccCCCCCccccccccccccCCCCcCcCCCCCccccCCCCccccccCCCCcc-ccccccCCCCCCCCCCcccCCcCCCC
Q 000801 101 EKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLW-YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 101 EEdqSlsFPs~yIDee~viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDra-yH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
.-+ .....+.+... +...|.|| +..+.+++||+||.|+.+ ||+|||+|++.++|-+.|||+.|.-.
T Consensus 200 ~~d---~~~d~~~~~~~----E~~~C~IC------~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 200 GGD---EKQDQISGLSQ----EEVKCDIC------TVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred ccc---cccccccCccc----ccccceee------ccCChHHhheeecccccceeeccccCcccccccccceecCcchhh
Confidence 000 00011222222 23469999 344578899999999999 99999999999999999999999754
No 2
>PHA02926 zinc finger-like protein; Provisional
Probab=98.84 E-value=8.4e-10 Score=118.30 Aligned_cols=69 Identities=36% Similarity=0.825 Sum_probs=55.8
Q ss_pred ccCCCcccccCCCccccccccccccc--------ceeecCCCCcccHhHHhhhccC------CCCCCCCCcccceeeecc
Q 000801 11 QVDNTENDLLNFECGRCGICMDVVID--------RGVLDCCQHWFCFACIDNWSTI------TNLCPLCQGEFQLITCVP 76 (1279)
Q Consensus 11 svdnsedD~~ssEDd~CpICLE~f~D--------~~vL~pCgHtFC~sCIq~WlK~------~nSCPLCRqeFs~I~~VP 76 (1279)
.++-+++....+.+..|+||++.+.+ .+.+.+|+|.||..||..|... ...||+||..|..+..-+
T Consensus 157 il~~ye~~~~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pSr 236 (242)
T PHA02926 157 ILDKYEDVYRVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMSK 236 (242)
T ss_pred HHHHHHHHHhccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecccc
Confidence 34456788888999999999998643 2678899999999999999864 356999999999887655
Q ss_pred ccc
Q 000801 77 VYD 79 (1279)
Q Consensus 77 VyD 79 (1279)
+|.
T Consensus 237 f~~ 239 (242)
T PHA02926 237 FYK 239 (242)
T ss_pred cee
Confidence 553
No 3
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.79 E-value=3.5e-09 Score=115.10 Aligned_cols=62 Identities=35% Similarity=0.792 Sum_probs=49.9
Q ss_pred CCcccccCCCcccccccccccccc-------eeecCCCCcccHhHHhhhccCCCCCCCCCcccceeeec
Q 000801 14 NTENDLLNFECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCV 75 (1279)
Q Consensus 14 nsedD~~ssEDd~CpICLE~f~D~-------~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~V 75 (1279)
..+.......+..|+||++.+.+. +++.+|+|.||..||..|++...+||+||..|..+...
T Consensus 164 ~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 164 EYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred hhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 344444445678999999987653 46778999999999999999999999999999876643
No 4
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.76 E-value=2e-09 Score=117.51 Aligned_cols=58 Identities=31% Similarity=0.646 Sum_probs=51.7
Q ss_pred ccccccCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 116 NAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 116 e~viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|.|.++..|.||+ -++|.|++||||.||++||||||.||+.+.|+|.|-|--|...
T Consensus 274 yrwqcieck~csicg------tsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~ 331 (336)
T KOG1244|consen 274 YRWQCIECKYCSICG------TSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEE 331 (336)
T ss_pred heeeeeecceecccc------CcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHH
Confidence 468899999999994 3457789999999999999999999999999999999999654
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=2.7e-08 Score=107.25 Aligned_cols=62 Identities=32% Similarity=0.801 Sum_probs=54.0
Q ss_pred CCCcccccccccccccceeecCCCCcccHhHHhhhccC---CCCCCCCCcccceeeeccccccCCC
Q 000801 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQLITCVPVYDTIGS 83 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRqeFs~I~~VPVyD~iGg 83 (1279)
....+.|.||++...+ +++..|||.||+.||.+|+.. ...||+|+..+..-..+|+|.+...
T Consensus 44 ~~~~FdCNICLd~akd-PVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~ 108 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKD-PVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSK 108 (230)
T ss_pred CCCceeeeeeccccCC-CEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCC
Confidence 4667899999999999 678889999999999999865 5679999999999899999976553
No 6
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.59 E-value=4e-08 Score=104.09 Aligned_cols=60 Identities=35% Similarity=0.781 Sum_probs=50.0
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhcc----------------CCCCCCCCCcccceeeeccccccCC
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST----------------ITNLCPLCQGEFQLITCVPVYDTIG 82 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK----------------~~nSCPLCRqeFs~I~~VPVyD~iG 82 (1279)
.++..|+||++.+.+ +++..|+|.||..||..|.. ....||+||..+.....+|+|....
T Consensus 16 ~~~~~CpICld~~~d-PVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~ 91 (193)
T PLN03208 16 GGDFDCNICLDQVRD-PVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ 91 (193)
T ss_pred CCccCCccCCCcCCC-cEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence 456899999999988 56678999999999999963 1357999999998877888887544
No 7
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.59 E-value=1.2e-08 Score=83.52 Aligned_cols=42 Identities=33% Similarity=0.821 Sum_probs=35.3
Q ss_pred ccccccccccc--cceeecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 25 d~CpICLE~f~--D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
+.|+||++.+. +..+..+|+|.||..||..|++...+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 47999999984 3456667999999999999999899999997
No 8
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.47 E-value=7.7e-08 Score=87.46 Aligned_cols=44 Identities=39% Similarity=0.868 Sum_probs=36.0
Q ss_pred Ccccccccccccccc------------eeecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 23 ECGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 23 EDd~CpICLE~f~D~------------~vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
.++.|+||++.+.+. .....|+|.||..||.+|++...+||+||
T Consensus 18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 355699999998432 34557999999999999999999999997
No 9
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=9.6e-08 Score=105.66 Aligned_cols=52 Identities=29% Similarity=0.786 Sum_probs=45.6
Q ss_pred cCCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCccccee
Q 000801 20 LNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I 72 (1279)
.......|.+|++...+ +...+|||.||..||..|......||+||..|+.-
T Consensus 235 i~~a~~kC~LCLe~~~~-pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSN-PSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCCCCCceEEEecCCCC-CCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 34556899999999888 67889999999999999999989999999998753
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.37 E-value=1.7e-07 Score=78.79 Aligned_cols=48 Identities=31% Similarity=0.672 Sum_probs=40.8
Q ss_pred CcccccccccccccceeecCCCCc-ccHhHHhhhccCCCCCCCCCcccce
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~pCgHt-FC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
|+..|.||++...+ ..+.+|+|. ||..|+..|......||+||+.+..
T Consensus 1 ~~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 1 EDEECPICFENPRD-VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp -HSB-TTTSSSBSS-EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CcCCCccCCccCCc-eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 46789999999887 677789999 9999999999999999999998764
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.34 E-value=1.8e-07 Score=75.17 Aligned_cols=39 Identities=38% Similarity=0.940 Sum_probs=34.2
Q ss_pred ccccccccccceeecCCCCcccHhHHhhhccCCCCCCCC
Q 000801 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLC 65 (1279)
|+||++.+.++.++.+|||.||..||..|.+....||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 899999999965789999999999999999888899998
No 12
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.27 E-value=4.3e-07 Score=74.98 Aligned_cols=38 Identities=37% Similarity=0.805 Sum_probs=28.4
Q ss_pred ccccccccccceeecCCCCcccHhHHhhhccC----CCCCCCC
Q 000801 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWSTI----TNLCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~----~nSCPLC 65 (1279)
|+||++.|.+ ++...|||+||..||..|.+. ...||.|
T Consensus 1 CpiC~~~~~~-Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKD-PVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SS-EEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCC-ccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999 666779999999999997644 2579988
No 13
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.26 E-value=5.3e-07 Score=70.71 Aligned_cols=44 Identities=41% Similarity=0.951 Sum_probs=37.8
Q ss_pred cccccccccccceeecCCCCcccHhHHhhhccC-CCCCCCCCccc
Q 000801 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEF 69 (1279)
Q Consensus 26 ~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeF 69 (1279)
.|+||++.+.+...+.+|+|.||..|+..|... ...||.|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998665667779999999999999886 77899998753
No 14
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.26 E-value=1.8e-07 Score=78.24 Aligned_cols=48 Identities=35% Similarity=0.842 Sum_probs=38.4
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCCCC--CCCCCcccCCcCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPE--GTCEDTWLCPRCVA 178 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple--~VPeGdWfCP~Crs 178 (1279)
+|.+|++ .++.+.||.|+.|+.|||.+|++++.. ..+.+.|+|+.|..
T Consensus 1 ~C~vC~~------~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ------SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS------SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC------cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 3789943 345567999999999999999999965 44556999999963
No 15
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.2e-07 Score=95.20 Aligned_cols=49 Identities=35% Similarity=0.700 Sum_probs=42.3
Q ss_pred CCcccccccccccccce-eecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 22 FECGRCGICMDVVIDRG-VLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~-vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
.....|||||+.+..+. +...|||.||..||...++....||+|++.+.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt 178 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT 178 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence 45578999999998754 55889999999999999999999999997544
No 16
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.22 E-value=7e-07 Score=76.85 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=41.0
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
+.|+||++.+.+ +++.+|||+||..||..|......||.|+..+..
T Consensus 2 ~~Cpi~~~~~~~-Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKD-PVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCC-CEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 689999999999 5677899999999999998888899999988753
No 17
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.18 E-value=5.3e-07 Score=99.55 Aligned_cols=56 Identities=29% Similarity=0.627 Sum_probs=46.9
Q ss_pred ccccccCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCC-cCCCC
Q 000801 116 NAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP-RCVAE 179 (1279)
Q Consensus 116 e~viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP-~Crs~ 179 (1279)
..|.|.+|..|.||.+. ..++.++|||.||++||++|+|+.. +|.|.|+|. .|+..
T Consensus 307 Y~W~C~~C~lC~IC~~P------~~E~E~~FCD~CDRG~HT~CVGL~~--lP~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 307 YFWKCSSCELCRICLGP------VIESEHLFCDVCDRGPHTLCVGLQD--LPRGEWICDMRCREA 363 (381)
T ss_pred cchhhcccHhhhccCCc------ccchheeccccccCCCCcccccccc--ccCccchhhhHHHHh
Confidence 45789999999999543 4567799999999999999999986 899999998 45544
No 18
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=98.16 E-value=7.6e-07 Score=106.60 Aligned_cols=57 Identities=21% Similarity=0.564 Sum_probs=46.2
Q ss_pred ccccCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 118 viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
|.|..+..|..|+ -.+++...++|+.||..||.||..|+...++.|.|+|+.|..-+
T Consensus 63 WrC~~crvCe~c~------~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c~ 119 (694)
T KOG4443|consen 63 WRCPSCRVCEACG------TTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRCR 119 (694)
T ss_pred cccCCceeeeecc------ccCCcccccccccccccccccccCCccccccCcccccHHHHhhh
Confidence 4555555677783 33466778999999999999999999999999999999986543
No 19
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.12 E-value=1.2e-06 Score=101.38 Aligned_cols=49 Identities=39% Similarity=0.657 Sum_probs=43.2
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
...+.|+||++.|.+ +++.+|+|.||..||..|......||+|+..+..
T Consensus 24 e~~l~C~IC~d~~~~-PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDV-PVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhC-ccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 566899999999988 5678999999999999999887889999998764
No 20
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=1.4e-06 Score=99.42 Aligned_cols=46 Identities=35% Similarity=0.852 Sum_probs=39.3
Q ss_pred ccccccccccc--cceeecCCCCcccHhHHhhhccCC-CCCCCCCcccc
Q 000801 25 GRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTIT-NLCPLCQGEFQ 70 (1279)
Q Consensus 25 d~CpICLE~f~--D~~vL~pCgHtFC~sCIq~WlK~~-nSCPLCRqeFs 70 (1279)
+.|+||+|.|. ++..+.+|.|.||..||+.|+... ..||+|++...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~ 278 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIR 278 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCC
Confidence 69999999985 556788999999999999999775 56999998544
No 21
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.09 E-value=1.8e-06 Score=81.55 Aligned_cols=48 Identities=29% Similarity=0.684 Sum_probs=38.8
Q ss_pred ccccccccccccc------------ceeecCCCCcccHhHHhhhccC---CCCCCCCCcccce
Q 000801 24 CGRCGICMDVVID------------RGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D------------~~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRqeFs~ 71 (1279)
++.|+||+..|.. +.+...|+|.||..||.+|+.. ...||+||+.|..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 7899999988752 1344579999999999999875 5789999998764
No 22
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.07 E-value=1.7e-06 Score=69.41 Aligned_cols=39 Identities=38% Similarity=0.933 Sum_probs=34.8
Q ss_pred ccccccccccceeecCCCCcccHhHHhhhcc--CCCCCCCC
Q 000801 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK--~~nSCPLC 65 (1279)
|+||++.+.++..+.+|+|.||..||..|.+ ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 8999999988555889999999999999987 57789998
No 23
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.97 E-value=2.1e-06 Score=96.69 Aligned_cols=49 Identities=29% Similarity=0.629 Sum_probs=44.1
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
+.-+.|.||.+.|.. +++.+|+|+||.-||+.++..+..||.|+.+|.-
T Consensus 21 D~lLRC~IC~eyf~i-p~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNI-PMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcC-ceeccccchHHHHHHHHHhccCCCCCceecccch
Confidence 455799999999987 6788899999999999999999999999998864
No 25
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.92 E-value=6.7e-06 Score=67.95 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=36.8
Q ss_pred ccccccccc--ccceeecCCCCcccHhHHhhhccCCCCCCCCCc
Q 000801 26 RCGICMDVV--IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1279)
Q Consensus 26 ~CpICLE~f--~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRq 67 (1279)
.|+||++.+ ..++++.+|+|+||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 499999998 345889999999999999998866789999985
No 26
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.87 E-value=5.9e-06 Score=77.32 Aligned_cols=49 Identities=29% Similarity=0.649 Sum_probs=40.2
Q ss_pred cccccccccccccc---------------eeecCCCCcccHhHHhhhccCCCCCCCCCccccee
Q 000801 24 CGRCGICMDVVIDR---------------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 24 Dd~CpICLE~f~D~---------------~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I 72 (1279)
-++|+||...+.+. ..-..|.|.||..||.+|+...+.||+||+.|.+.
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 37899998877542 22236999999999999999999999999998764
No 27
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.84 E-value=6.5e-06 Score=91.45 Aligned_cols=51 Identities=25% Similarity=0.457 Sum_probs=44.9
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
+.-+.|-||.+.|.. +++.+|||+||.-||...+..+..||+||..+....
T Consensus 23 Ds~lrC~IC~~~i~i-p~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esr 73 (391)
T COG5432 23 DSMLRCRICDCRISI-PCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESR 73 (391)
T ss_pred hhHHHhhhhhheeec-ceecccccchhHHHHHHHhcCCCCCccccccHHhhh
Confidence 455789999999987 678889999999999999999999999999876543
No 28
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.82 E-value=9.9e-06 Score=61.36 Aligned_cols=38 Identities=42% Similarity=1.046 Sum_probs=32.6
Q ss_pred ccccccccccceeecCCCCcccHhHHhhhcc-CCCCCCCC
Q 000801 27 CGICMDVVIDRGVLDCCQHWFCFACIDNWST-ITNLCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK-~~nSCPLC 65 (1279)
|+||++.... ....+|+|.||..|+..|.. ....||.|
T Consensus 1 C~iC~~~~~~-~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKD-PVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCC-cEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 8999999665 56678999999999999987 56779987
No 29
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=7.2e-06 Score=83.93 Aligned_cols=46 Identities=33% Similarity=0.589 Sum_probs=40.1
Q ss_pred CCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCc
Q 000801 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRq 67 (1279)
..+...|+||++.|..+ .+.+|+|.||..||..+......||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p-~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREP-VLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcC-ccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 35678999999999986 88889999999999986667788999993
No 30
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=8.6e-06 Score=95.94 Aligned_cols=47 Identities=32% Similarity=0.715 Sum_probs=38.2
Q ss_pred cccccccccccccceeecCCCCcccHhHHhh-hcc----CCCCCCCCCcccce
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDN-WST----ITNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~-WlK----~~nSCPLCRqeFs~ 71 (1279)
+..||||++...- +..+.|||+||+.||-+ |.. .-..||+|+..++.
T Consensus 186 ~~~CPICL~~~~~-p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSV-PVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCc-ccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 7899999998765 45566999999999987 432 25689999998886
No 31
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1e-05 Score=92.22 Aligned_cols=49 Identities=27% Similarity=0.584 Sum_probs=40.3
Q ss_pred CCcccccccccc-cccc-----------eeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 22 FECGRCGICMDV-VIDR-----------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~-f~D~-----------~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
..|..|.||++. ++.. +.-.+|||.||+.|+..|+++..+||.||.++-
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence 456789999998 4321 344589999999999999999999999998854
No 32
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1.1e-05 Score=90.09 Aligned_cols=48 Identities=35% Similarity=0.791 Sum_probs=40.9
Q ss_pred CCcccccccccccc--cceeecCCCCcccHhHHhhhcc-CCCCCCCCCccc
Q 000801 22 FECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWST-ITNLCPLCQGEF 69 (1279)
Q Consensus 22 sEDd~CpICLE~f~--D~~vL~pCgHtFC~sCIq~WlK-~~nSCPLCRqeF 69 (1279)
.....|+|||+.|. ++....||.|.||..|+.+|.. ..+.||+||..+
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~i 371 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCC
Confidence 34578999999884 5567889999999999999997 589999999865
No 33
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.76 E-value=8.2e-06 Score=97.76 Aligned_cols=49 Identities=31% Similarity=0.731 Sum_probs=41.6
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCC--CCCCCCCcccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD--PEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPp--le~VPeGdWfCP~Crs~ 179 (1279)
+|.-|.+...+ ..+++||+|++.||++||.|| .+.+|.|.|||+.|...
T Consensus 255 fCsaCn~~~~F------~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k 305 (613)
T KOG4299|consen 255 FCSACNGSGLF------NDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIK 305 (613)
T ss_pred HHHHhCCcccc------ccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeee
Confidence 79999665222 347999999999999999999 67889999999999876
No 34
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.64 E-value=3.5e-05 Score=79.40 Aligned_cols=30 Identities=27% Similarity=0.617 Sum_probs=27.3
Q ss_pred cccccccCCCCCCCCCCcccCCcCCCCCCC
Q 000801 153 WYHAFCVGFDPEGTCEDTWLCPRCVAEVPQ 182 (1279)
Q Consensus 153 ayH~~CLgPple~VPeGdWfCP~Crs~~p~ 182 (1279)
+||++||.||+..+|+|+|+||.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 699999999999999999999999987443
No 35
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.63 E-value=2.2e-05 Score=71.28 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=38.7
Q ss_pred CcccccccccccccceeecCCCCcccHhHHhhhccC-CCCCCCCCcccceee
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQLIT 73 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeFs~I~ 73 (1279)
+.+.|+||++.+.+ +++.+|||+|+..||..|... ...||+|+..+..-.
T Consensus 3 ~~f~CpIt~~lM~d-PVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~ 53 (73)
T PF04564_consen 3 DEFLCPITGELMRD-PVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD 53 (73)
T ss_dssp GGGB-TTTSSB-SS-EEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred cccCCcCcCcHhhC-ceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence 46899999999999 566678999999999999988 899999998876533
No 36
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.63 E-value=1.7e-05 Score=88.17 Aligned_cols=36 Identities=44% Similarity=1.161 Sum_probs=32.5
Q ss_pred ccccccCC--CC-ccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 142 DTSIACDS--CD-LWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 142 D~LLLCDs--CD-rayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|+.||. |+ .|||+.|+|+.. .|.|.||||.|...
T Consensus 230 g~Mi~CDn~~C~~eWFH~~CVGL~~--~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 230 GKMIGCDNPGCPIEWFHFTCVGLKT--KPKGKWYCPRCKAE 268 (274)
T ss_pred ccccccCCCCCCcceEEEecccccc--CCCCcccchhhhhh
Confidence 46999997 99 899999999995 78999999999876
No 37
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=97.63 E-value=2.4e-05 Score=94.20 Aligned_cols=105 Identities=16% Similarity=0.389 Sum_probs=70.7
Q ss_pred CCcCcCCCCCccccCCCCccccccC--CCCccccccccCCCCCCCCCCcccCCcCCCCCCCCCccccccccc---cCCCC
Q 000801 124 DGCKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVPQNSSIDLTQSTN---DQSGP 198 (1279)
Q Consensus 124 g~C~VC~Gs~~r~ddsnED~LLLCD--sCDrayH~~CLgPple~VPeGdWfCP~Crs~~p~ga~~dliqrl~---~q~~~ 198 (1279)
+.|+||..+ ++. .|.-|+||| .|..+.|..|+|+.. +|+|.|||+-|... ...+.+++..=.- ..+.-
T Consensus 6 GGCCVCSDE--rGW--aeNPLVYCDG~nCsVAVHQaCYGIvq--VPtGpWfCrKCesq-eraarvrCeLCP~kdGALKkT 78 (900)
T KOG0956|consen 6 GGCCVCSDE--RGW--AENPLVYCDGHNCSVAVHQACYGIVQ--VPTGPWFCRKCESQ-ERAARVRCELCPHKDGALKKT 78 (900)
T ss_pred cceeeecCc--CCC--ccCceeeecCCCceeeeehhcceeEe--cCCCchhhhhhhhh-hhhccceeecccCcccceecc
Confidence 569999432 343 345799999 699999999999996 99999999999654 2222333222110 11111
Q ss_pred CCCCCCccccccCCccccccccccccceeeeeecccCC
Q 000801 199 ENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEP 236 (1279)
Q Consensus 199 ~~~s~k~lae~~FS~svSVS~aD~gETAiVvSmvG~~~ 236 (1279)
.+.+-.|..+++|-.+|.|.+.-.+| +||++.|-.++
T Consensus 79 Dn~GWAHVVCALYIPEVrFgNV~TME-PIiLq~VP~dR 115 (900)
T KOG0956|consen 79 DNGGWAHVVCALYIPEVRFGNVHTME-PIILQDVPHDR 115 (900)
T ss_pred cCCCceEEEEEeeccceeeccccccc-ceeeccCchhh
Confidence 22233478888899999888886653 67888887665
No 38
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.8e-05 Score=94.93 Aligned_cols=49 Identities=22% Similarity=0.533 Sum_probs=42.1
Q ss_pred CCCcccccccccccccc----eeecCCCCcccHhHHhhhccCCCCCCCCCccc
Q 000801 21 NFECGRCGICMDVVIDR----GVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~----~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeF 69 (1279)
...+..|+||++.+... +...+|+|.||..|+..|.+...+||.||..+
T Consensus 288 ~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 288 ALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred hhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhh
Confidence 34578999999998763 45667999999999999999999999999943
No 39
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.58 E-value=2.4e-05 Score=86.31 Aligned_cols=47 Identities=26% Similarity=0.680 Sum_probs=40.1
Q ss_pred CcccccccccccccceeecCCCCcccHhHHhh-hccCCCC-CCCCCcccc
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDN-WSTITNL-CPLCQGEFQ 70 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~-WlK~~nS-CPLCRqeFs 70 (1279)
.+..|+||++.... +...+|||.||..||-. |...... ||+||+..+
T Consensus 214 ~d~kC~lC~e~~~~-ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 214 ADYKCFLCLEEPEV-PSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred cccceeeeecccCC-cccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 47789999999887 66778999999999999 9877655 999998655
No 40
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.56 E-value=3.2e-05 Score=98.11 Aligned_cols=53 Identities=32% Similarity=0.637 Sum_probs=44.4
Q ss_pred cCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 121 sD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
.++.+|.||.. ++..|.+.+++||.|+.++|++|+|.+ .+|+|.|+|..|.-.
T Consensus 217 ~~D~~C~iC~~----~~~~n~n~ivfCD~Cnl~VHq~Cygi~--~ipeg~WlCr~Cl~s 269 (1051)
T KOG0955|consen 217 EEDAVCCICLD----GECQNSNVIVFCDGCNLAVHQECYGIP--FIPEGQWLCRRCLQS 269 (1051)
T ss_pred CCCccceeecc----cccCCCceEEEcCCCcchhhhhccCCC--CCCCCcEeehhhccC
Confidence 45678999943 344566889999999999999999966 399999999999876
No 41
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=97.53 E-value=6.2e-05 Score=88.70 Aligned_cols=50 Identities=24% Similarity=0.572 Sum_probs=40.5
Q ss_pred cCcCCCCCccccCCCCccccccCCCCccccccccCCC----CCCCCCCcccCCcCCCC
Q 000801 126 CKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD----PEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 126 C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPp----le~VPeGdWfCP~Crs~ 179 (1279)
|.+|.. +....++.|++|+.|..|||..|..|+ +...+.+.|||-.|...
T Consensus 171 c~vC~~----g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVCYC----GGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeeeec----CCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 888842 233455689999999999999999998 34557889999999887
No 42
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.48 E-value=2.8e-05 Score=95.10 Aligned_cols=52 Identities=25% Similarity=0.568 Sum_probs=42.8
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhcc-CCCCCCCCCcccceeeecc
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQLITCVP 76 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK-~~nSCPLCRqeFs~I~~VP 76 (1279)
-..|++|...+.+ .++..|+|.||+.||+.-.. +...||.|...|..-..++
T Consensus 643 ~LkCs~Cn~R~Kd-~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCNTRWKD-AVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred ceeCCCccCchhh-HHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 4689999988888 67888999999999998554 5789999999998654433
No 43
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.9e-05 Score=87.09 Aligned_cols=53 Identities=34% Similarity=0.950 Sum_probs=43.0
Q ss_pred CCCcccccccccccccc-------eeecCCCCcccHhHHhhhc--cC-----CCCCCCCCcccceee
Q 000801 21 NFECGRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWS--TI-----TNLCPLCQGEFQLIT 73 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~-------~vL~pCgHtFC~sCIq~Wl--K~-----~nSCPLCRqeFs~I~ 73 (1279)
...+.+|+||++.+.+. +++.+|.|.||..||..|. .. ...||.||....++.
T Consensus 158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 46788999999987653 3567899999999999998 33 578999999876644
No 44
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.46 E-value=3.2e-05 Score=75.43 Aligned_cols=51 Identities=31% Similarity=0.786 Sum_probs=40.5
Q ss_pred CCCcccccccccccccc--------------e--eecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 21 NFECGRCGICMDVVIDR--------------G--VLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~--------------~--vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
+..-++|+||...+.+. + .=..|.|.||+.||.+|+++++.||+|.+...+
T Consensus 43 Di~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 43 DIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF 109 (114)
T ss_pred eeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence 35678999999876542 1 112599999999999999999999999887654
No 45
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=97.40 E-value=3e-05 Score=101.16 Aligned_cols=51 Identities=25% Similarity=0.630 Sum_probs=43.9
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
...|.+|.. ......|++|+.|+.|||++|+.|.+..+|.|+|+||.|+..
T Consensus 1108 ~~~c~~cr~------k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e 1158 (1404)
T KOG1245|consen 1108 NALCKVCRR------KKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKE 1158 (1404)
T ss_pred hhhhhhhhh------cccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchh
Confidence 357999932 223357999999999999999999999999999999999988
No 46
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.35 E-value=7.1e-05 Score=82.38 Aligned_cols=36 Identities=36% Similarity=1.076 Sum_probs=31.4
Q ss_pred ccccccC--CCCc-cccccccCCCCCCCCCCcccCCcCCCC
Q 000801 142 DTSIACD--SCDL-WYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 142 D~LLLCD--sCDr-ayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|+.|| .|.+ |||+.|+|+.. .|.|.|||+.|...
T Consensus 232 GqMVaCDn~nCkrEWFH~~CVGLk~--pPKG~WYC~eCk~~ 270 (271)
T COG5034 232 GQMVACDNANCKREWFHLECVGLKE--PPKGKWYCPECKKA 270 (271)
T ss_pred ccceecCCCCCchhheeccccccCC--CCCCcEeCHHhHhc
Confidence 4699999 5876 99999999985 89999999999753
No 47
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.35 E-value=0.00014 Score=82.41 Aligned_cols=50 Identities=20% Similarity=0.494 Sum_probs=37.9
Q ss_pred Ccccccccccc--cccc--eeecCCCCcccHhHHhh-hccCCCCCCCCCccccee
Q 000801 23 ECGRCGICMDV--VIDR--GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 23 EDd~CpICLE~--f~D~--~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I 72 (1279)
++..||||... +... ..+..|||.||..||.. |......||.|+..+..-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchh
Confidence 34689999984 3221 23447999999999998 667778999999887653
No 48
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.34 E-value=7.5e-05 Score=91.74 Aligned_cols=49 Identities=27% Similarity=0.687 Sum_probs=41.1
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
...|.||.+ . ..+++||.|..+||.+|+++++...|.++|.|++|..+.
T Consensus 47 ~e~c~ic~~------~---g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~ 95 (696)
T KOG0383|consen 47 QEACRICAD------G---GELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPK 95 (696)
T ss_pred hhhhhhhcC------C---CcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCC
Confidence 346899932 2 357999999999999999999999999999999996553
No 49
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=2.9e-05 Score=88.43 Aligned_cols=49 Identities=29% Similarity=0.563 Sum_probs=41.5
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhc-cCCCCCCCCCcccc
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~Wl-K~~nSCPLCRqeFs 70 (1279)
..++.|+||++.+........|.|.||+.||...+ ...+.||.||+..-
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 45689999999998877788899999999998754 45899999998654
No 50
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.23 E-value=0.00012 Score=61.53 Aligned_cols=36 Identities=31% Similarity=0.711 Sum_probs=20.5
Q ss_pred cccccccccc---ceeecCCCCcccHhHHhhhccC----CCCCC
Q 000801 27 CGICMDVVID---RGVLDCCQHWFCFACIDNWSTI----TNLCP 63 (1279)
Q Consensus 27 CpICLE~f~D---~~vL~pCgHtFC~sCIq~WlK~----~nSCP 63 (1279)
|+||++ +.+ +++..+|||+||..||.++.+. ...||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 754 3566679999999999998763 45676
No 51
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=7e-05 Score=69.89 Aligned_cols=48 Identities=31% Similarity=0.661 Sum_probs=37.3
Q ss_pred cccccccccccccc------------eeecCCCCcccHhHHhhhccC---CCCCCCCCcccce
Q 000801 24 CGRCGICMDVVIDR------------GVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D~------------~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRqeFs~ 71 (1279)
+++|+||.-.|..- .+..-|.|.||..||.+|... ...||+||+.|..
T Consensus 20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 45999998877521 233369999999999999854 5679999999874
No 52
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.16 E-value=0.00019 Score=65.20 Aligned_cols=45 Identities=33% Similarity=0.805 Sum_probs=24.4
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
-..|++|.+.+..+..+..|.|.||..||..... ..||+|+.+-.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHH
Confidence 4789999999998767889999999999987543 35999987643
No 53
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00023 Score=81.41 Aligned_cols=69 Identities=26% Similarity=0.493 Sum_probs=54.3
Q ss_pred hhhhhhhccccCC----CcccccCCCcccccccccccccceeecCCCCc-ccHhHHhhhccCCCCCCCCCccccee
Q 000801 2 ESMLEEQTFQVDN----TENDLLNFECGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 2 ~~~leei~~svdn----sedD~~ssEDd~CpICLE~f~D~~vL~pCgHt-FC~sCIq~WlK~~nSCPLCRqeFs~I 72 (1279)
+|++++|.+.-++ ++.+ .+.+...|-||+....| -++.||.|. .|..|.....-+++.||+||+.+...
T Consensus 265 ~y~LqEiyGien~~v~~~~~~-~~~~gkeCVIClse~rd-t~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l 338 (349)
T KOG4265|consen 265 RYLLQEIYGIENSTVEGTDAD-ESESGKECVICLSESRD-TVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL 338 (349)
T ss_pred eeeeehhhccccCCCCCCccc-cccCCCeeEEEecCCcc-eEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence 5778888775432 2222 44667899999999998 677889997 89999998887899999999988753
No 54
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=97.11 E-value=0.00014 Score=85.40 Aligned_cols=51 Identities=27% Similarity=0.681 Sum_probs=42.9
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
++.|.+|.+ .+.+|.+.+++||+|+.+.|..|.|.+. +|+|.|+|..|.-.
T Consensus 193 d~~C~~c~~----t~~eN~naiVfCdgC~i~VHq~CYGI~f--~peG~WlCrkCi~~ 243 (669)
T COG5141 193 DDICTKCTS----THNENSNAIVFCDGCEICVHQSCYGIQF--LPEGFWLCRKCIYG 243 (669)
T ss_pred hhhhHhccc----cccCCcceEEEecCcchhhhhhccccee--cCcchhhhhhhccc
Confidence 356888854 3455778899999999999999999996 89999999999755
No 55
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=96.80 E-value=0.00031 Score=85.65 Aligned_cols=100 Identities=23% Similarity=0.406 Sum_probs=67.4
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCC---------CCCCccccccccc
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV---------PQNSSIDLTQSTN 193 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~---------p~ga~~dliqrl~ 193 (1279)
+..|.||. + .|.+..+.|+|||.|+...|..|.|+-. +|+|.|+|.-|.-.. .+|+......-.
T Consensus 271 dviCDvCr-s---pD~e~~neMVfCd~Cn~cVHqaCyGIle--~p~gpWlCr~Calg~~ppCvLCPkkGGamK~~~sgT- 343 (893)
T KOG0954|consen 271 DVICDVCR-S---PDSEEANEMVFCDKCNICVHQACYGILE--VPEGPWLCRTCALGIEPPCVLCPKKGGAMKPTKSGT- 343 (893)
T ss_pred cceeceec-C---CCccccceeEEeccchhHHHHhhhceee--cCCCCeeehhccccCCCCeeeccccCCcccccCCCC-
Confidence 45688993 2 3444556899999999999999999985 899999999997552 222221111100
Q ss_pred cCCCCCCCCCCccccccCCccccccccccccceeeeeecccCCC
Q 000801 194 DQSGPENANGDHLAESLFPRKVSVSVADAGETAVVVSMIGEEPN 237 (1279)
Q Consensus 194 ~q~~~~~~s~k~lae~~FS~svSVS~aD~gETAiVvSmvG~~~~ 237 (1279)
.=.|..+++|-++|++-..+-+|-.+=++-+-..+|
T Consensus 344 --------~wAHvsCALwIPEVsie~~ekmePItkfs~IpesRw 379 (893)
T KOG0954|consen 344 --------KWAHVSCALWIPEVSIECPEKMEPITKFSHIPESRW 379 (893)
T ss_pred --------eeeEeeeeeccceeeccCHhhcCcccccCCCcHHHH
Confidence 112777888888888877766666555555555555
No 56
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.68 E-value=0.0014 Score=73.23 Aligned_cols=55 Identities=22% Similarity=0.512 Sum_probs=44.3
Q ss_pred ccCCCcccccccccccccceeecCCCCcccHhHHhhhccC--CCCCCCCCcccceee
Q 000801 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1279)
Q Consensus 19 ~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs~I~ 73 (1279)
++...+.+|++|.+.-..+-.+.+|+|.||+.||..-... ...||.|......+.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 3446678999999998887788889999999999875443 578999998876544
No 57
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.55 E-value=0.00071 Score=84.07 Aligned_cols=50 Identities=30% Similarity=0.699 Sum_probs=39.8
Q ss_pred CCcccccccccccc--cc----eeecCCCCcccHhHHhhhccC--CCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVI--DR----GVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~--D~----~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs~ 71 (1279)
+....|+||+..+. ++ ..+..|.|.||..|+-+|.+. .+.||+||.++..
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 45678999998874 22 356679999999999999764 7899999987653
No 58
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.00081 Score=79.38 Aligned_cols=49 Identities=29% Similarity=0.660 Sum_probs=37.8
Q ss_pred CCcccccccccccccc----------------eeecCCCCcccHhHHhhhccC-CCCCCCCCcccc
Q 000801 22 FECGRCGICMDVVIDR----------------GVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~----------------~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeFs 70 (1279)
.....|+|||..+.-. -.+.||.|.||..|+.+|+.. ...||.||.+.-
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3446799999875311 234589999999999999984 669999998653
No 59
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.32 E-value=0.00071 Score=76.93 Aligned_cols=49 Identities=27% Similarity=0.611 Sum_probs=43.6
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCccccee
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I 72 (1279)
..+|.+|...|.|.-.+.-|.|+||..||-..+...+.||.|...++.-
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence 4789999999999777888999999999999988899999999876643
No 60
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.26 E-value=0.0021 Score=75.55 Aligned_cols=46 Identities=24% Similarity=0.591 Sum_probs=37.0
Q ss_pred CCCcccccccccccccc---eeecCCCCcccHhHHhhhccCCCCCCCCCcc
Q 000801 21 NFECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~---~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqe 68 (1279)
-.|-.+||||++.+..- .....|.|.||-.|+..|. ..+||+||..
T Consensus 172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~--~~scpvcR~~ 220 (493)
T KOG0804|consen 172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWW--DSSCPVCRYC 220 (493)
T ss_pred cccCCCcchhHhhcCccccceeeeecccccchHHHhhcc--cCcChhhhhh
Confidence 46888999999986431 3455799999999999997 5789999763
No 61
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.0024 Score=74.82 Aligned_cols=49 Identities=29% Similarity=0.636 Sum_probs=42.9
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
..++.|.||+..+.. ++..+|||.||..||.+.+.....||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~-pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYP-PVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCC-CccccccccccHHHHHHHhccCCCCccccccccc
Confidence 567889999999998 4555999999999999988888999999998764
No 62
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.13 E-value=0.0026 Score=74.22 Aligned_cols=55 Identities=31% Similarity=0.593 Sum_probs=46.5
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceeeecc
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVP 76 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~VP 76 (1279)
+++..|+||...+.++.....|+|.||..||..|...+..||.|+........++
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhccC
Confidence 5678999999999994433589999999999999998999999999877666443
No 63
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0028 Score=71.67 Aligned_cols=47 Identities=26% Similarity=0.491 Sum_probs=38.0
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccC-CCCCCCCCcccce
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeFs~ 71 (1279)
...|+||+....- ++.+.|+|.||+-||.-...+ ...|++||.+|..
T Consensus 7 ~~eC~IC~nt~n~-Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids 54 (324)
T KOG0824|consen 7 KKECLICYNTGNC-PVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDS 54 (324)
T ss_pred CCcceeeeccCCc-CccccccchhhhhhhcchhhcCCCCCceecCCCCc
Confidence 4689999998655 577889999999999875444 5669999998753
No 64
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.73 E-value=0.0044 Score=71.98 Aligned_cols=49 Identities=27% Similarity=0.698 Sum_probs=41.2
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhccC--CCCCCCCCcccceeee
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQLITC 74 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs~I~~ 74 (1279)
..|-||-+.-.| ..+.+|||..|..|+..|... ...||.||.++.....
T Consensus 370 eLCKICaendKd-vkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKD-VKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCC-cccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 469999998777 788999999999999999854 6889999998765443
No 65
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.0044 Score=71.94 Aligned_cols=43 Identities=33% Similarity=0.794 Sum_probs=33.6
Q ss_pred cccccccccc---ccceeecCCCCcccHhHHhhhccC---CCCCCCCCc
Q 000801 25 GRCGICMDVV---IDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQG 67 (1279)
Q Consensus 25 d~CpICLE~f---~D~~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRq 67 (1279)
..|.||-+.+ ++.+-+..|||+||..|+.+|.+. +..||.|+-
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~i 53 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQI 53 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceee
Confidence 4799996554 233556679999999999999986 357999993
No 66
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=95.51 E-value=0.0082 Score=71.33 Aligned_cols=49 Identities=27% Similarity=0.601 Sum_probs=39.5
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCC----cccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED----TWLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeG----dWfCP~Crs~ 179 (1279)
-|.||..+ .+-..++.||.|..-||..||.||+..+|.- .|.|-.|...
T Consensus 546 sCgiCkks------~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 546 SCGICKKS------TDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeccc------hhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 49999544 2334689999999999999999999988854 5999999443
No 67
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.44 E-value=0.0031 Score=57.56 Aligned_cols=47 Identities=28% Similarity=0.665 Sum_probs=22.8
Q ss_pred cccccccccccc-cc----eee--cCCCCcccHhHHhhhccC-----------CCCCCCCCcccc
Q 000801 24 CGRCGICMDVVI-DR----GVL--DCCQHWFCFACIDNWSTI-----------TNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~-D~----~vL--~pCgHtFC~sCIq~WlK~-----------~nSCPLCRqeFs 70 (1279)
+..|+||+..+. +. .+. ..|++.||..||..|... ...||.|+..+.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998764 21 222 379999999999999742 125999998765
No 68
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=95.43 E-value=0.0023 Score=52.10 Aligned_cols=34 Identities=32% Similarity=0.898 Sum_probs=19.8
Q ss_pred ccccccCCCCccccccccCCCCCCCCCC-cccCCcCC
Q 000801 142 DTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCV 177 (1279)
Q Consensus 142 D~LLLCDsCDrayH~~CLgPple~VPeG-dWfCP~Cr 177 (1279)
+.|+.|+.|...+|..|.|... ++.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CYGv~~--~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCYGVSE--VPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHHT-SS----SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhCCccc--CCCCCcEECCcCC
Confidence 3589999999999999999996 4444 79999884
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.0056 Score=68.45 Aligned_cols=50 Identities=24% Similarity=0.620 Sum_probs=38.6
Q ss_pred CCccccccccccccc---------ceeecCCCCcccHhHHhhhccC--CCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVID---------RGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D---------~~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs~ 71 (1279)
-++-.|+||-..+.. .-.-..|+|.||-.||+-|.-. ..+||.|+..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 456799999887642 1234579999999999999753 7789999987654
No 70
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.0055 Score=54.59 Aligned_cols=46 Identities=30% Similarity=0.788 Sum_probs=37.8
Q ss_pred ccccccccccccceeecCCCCc-ccHhHHhh-hccCCCCCCCCCcccce
Q 000801 25 GRCGICMDVVIDRGVLDCCQHW-FCFACIDN-WSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHt-FC~sCIq~-WlK~~nSCPLCRqeFs~ 71 (1279)
+.|.||++...+ .++-.|||. .|+.|-.+ |...+-.||+||.++..
T Consensus 8 dECTICye~pvd-sVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVD-SVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcch-HHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHH
Confidence 789999998776 567779997 79999654 66678999999998764
No 71
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.011 Score=68.02 Aligned_cols=55 Identities=27% Similarity=0.538 Sum_probs=46.5
Q ss_pred cccccCCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 16 ENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 16 edD~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
..++..+|+..|+||+..-.. .+..+|+|.-|+.||.+.+-+...|=.|+..+..
T Consensus 414 ~~~lp~sEd~lCpICyA~pi~-Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 414 NKDLPDSEDNLCPICYAGPIN-AVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cCCCCCcccccCcceecccch-hhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 445556899999999987665 6788999999999999999888999999887664
No 72
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.02 E-value=0.015 Score=49.96 Aligned_cols=41 Identities=22% Similarity=0.694 Sum_probs=30.7
Q ss_pred cccccccccc-cceeecCCC-----CcccHhHHhhhccC--CCCCCCCC
Q 000801 26 RCGICMDVVI-DRGVLDCCQ-----HWFCFACIDNWSTI--TNLCPLCQ 66 (1279)
Q Consensus 26 ~CpICLE~f~-D~~vL~pCg-----HtFC~sCIq~WlK~--~nSCPLCR 66 (1279)
.|.||++... +...+.||. |.||..|+.+|... ..+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998222 224566774 89999999999844 56899995
No 73
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=94.80 E-value=0.0095 Score=64.32 Aligned_cols=46 Identities=26% Similarity=0.432 Sum_probs=38.7
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
.+.|.||...+.. ++...|||.||..|...-.+....|-+|....+
T Consensus 196 PF~C~iCKkdy~s-pvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 196 PFLCGICKKDYES-PVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred ceeehhchhhccc-hhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 4689999999988 567779999999998776667789999987654
No 74
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.012 Score=66.56 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=40.9
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
.+.|.||...|.+ ++...|+|+||-.|...-......|++|.+..+.+.
T Consensus 241 Pf~c~icr~~f~~-pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYR-PVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred Ccccccccccccc-chhhcCCceeehhhhccccccCCcceeccccccccc
Confidence 3569999999998 677789999999998877777889999988766443
No 75
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.72 E-value=0.017 Score=51.32 Aligned_cols=42 Identities=21% Similarity=0.291 Sum_probs=30.1
Q ss_pred CcccccccccccccceeecCCCCcccHhHHhhhcc--CCCCCCC
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST--ITNLCPL 64 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK--~~nSCPL 64 (1279)
-...|||.+..|.++.....|+|+|....|..|.. ....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 35799999999999777779999999999999983 3667998
No 76
>PHA03096 p28-like protein; Provisional
Probab=94.58 E-value=0.013 Score=66.28 Aligned_cols=43 Identities=30% Similarity=0.621 Sum_probs=32.7
Q ss_pred ccccccccccccc-------eeecCCCCcccHhHHhhhccC---CCCCCCCCc
Q 000801 25 GRCGICMDVVIDR-------GVLDCCQHWFCFACIDNWSTI---TNLCPLCQG 67 (1279)
Q Consensus 25 d~CpICLE~f~D~-------~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRq 67 (1279)
..|+||++....+ +.+..|.|.||..||..|... ...||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 6899999976422 678899999999999999753 344555554
No 77
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.20 E-value=0.016 Score=69.30 Aligned_cols=50 Identities=30% Similarity=0.660 Sum_probs=40.6
Q ss_pred cCCCcccccccccccccceeecCCCCcccHhHHhhhccC-----CCCCCCCCcccc
Q 000801 20 LNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI-----TNLCPLCQGEFQ 70 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~-----~nSCPLCRqeFs 70 (1279)
.+.+...|.+|.+...+ .+...|.|.||..||..+... ...||.|-..++
T Consensus 532 enk~~~~C~lc~d~aed-~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPAED-YIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cccCceeecccCChhhh-hHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 35667899999999888 667789999999999877532 578999977654
No 78
>PF04641 Rtf2: Rtf2 RING-finger
Probab=94.01 E-value=0.048 Score=60.56 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=44.0
Q ss_pred CCCccccccccccccc---ceeecCCCCcccHhHHhhhccCCCCCCCCCcccceeeecc
Q 000801 21 NFECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVP 76 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D---~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~VP 76 (1279)
......|||+...|.. ...+.+|||+|+..||.... ....||+|...|.....|+
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~ 167 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIP 167 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEE
Confidence 4567899999998854 26788999999999999874 4567999999998655443
No 79
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.74 E-value=0.028 Score=63.67 Aligned_cols=43 Identities=28% Similarity=0.636 Sum_probs=38.0
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhc-cCCCCCCCCCc
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-TITNLCPLCQG 67 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~Wl-K~~nSCPLCRq 67 (1279)
+.|+.|...+.+++...+|+|.||..||...+ .....||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 79999999999988788999999999999754 56889999955
No 80
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.20 E-value=0.077 Score=62.45 Aligned_cols=45 Identities=38% Similarity=0.790 Sum_probs=36.3
Q ss_pred ccccccccccccc----ceeecCCCCcccHhHHhhhccC--CCCCCCCCcc
Q 000801 24 CGRCGICMDVVID----RGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGE 68 (1279)
Q Consensus 24 Dd~CpICLE~f~D----~~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqe 68 (1279)
..+||||++.+.- +.+...|+|.|-..||+.|+-. ...||.|...
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 4689999997642 3567789999999999999843 5689999754
No 81
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=92.04 E-value=0.03 Score=71.65 Aligned_cols=127 Identities=16% Similarity=0.247 Sum_probs=74.2
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhcc----CCCCCCCCCcc-cce-eee-ccccccCCCCcccCcccccC
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWST----ITNLCPLCQGE-FQL-ITC-VPVYDTIGSNNIDGDSLSRG 94 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK----~~nSCPLCRqe-Fs~-I~~-VPVyD~iGge~Idn~sVrrr 94 (1279)
..++.|-+|.+.... ..+..|+..+|..|...-.. ..+.|-+|+.. +.. +.+ .|.. .....+
T Consensus 342 ~~ddhcrf~~d~~~~-lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~hkvngvvd~vl~~~--K~~~~i-------- 410 (1414)
T KOG1473|consen 342 EYDDHCRFCHDLGDL-LCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIHKVNGVVDCVLPPS--KNVDSI-------- 410 (1414)
T ss_pred eecccccccCcccce-eecccCCceEEeeecCCccccCCCccchhhhhhhhccCcccccccChh--hcccce--------
Confidence 456789999887554 66778999998888765432 24667777531 111 100 0000 000000
Q ss_pred CccchhhcccCCCCCccccccccccccCCCCcCcCCCCCccccCCCCccccccCC-CCccccc-cccC--CCCCCCCCCc
Q 000801 95 EDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDS-CDLWYHA-FCVG--FDPEGTCEDT 170 (1279)
Q Consensus 95 dD~~IEEEdqSlsFPs~yIDee~viCsD~g~C~VC~Gs~~r~ddsnED~LLLCDs-CDrayH~-~CLg--Pple~VPeGd 170 (1279)
..+.-+....-+.+|. ....|.||+ .++++++|++ |...||+ .||+ .....++++-
T Consensus 411 ---R~~~iG~dr~gr~ywf--------i~rrl~Ie~---------~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i 470 (1414)
T KOG1473|consen 411 ---RHTPIGRDRYGRKYWF--------ISRRLRIEG---------MDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGI 470 (1414)
T ss_pred ---eccCCCcCccccchhc--------eeeeeEEec---------CCCcEEEEecCcHHHHHHHHHhchHHHHHhhccch
Confidence 0000000000011111 123578882 2357899998 9999999 9999 5567789999
Q ss_pred ccCCcCCCC
Q 000801 171 WLCPRCVAE 179 (1279)
Q Consensus 171 WfCP~Crs~ 179 (1279)
|+|+.|.-.
T Consensus 471 ~~~~ee~~r 479 (1414)
T KOG1473|consen 471 WERREEIIR 479 (1414)
T ss_pred hhhHHHHHH
Confidence 999999766
No 82
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.056 Score=61.39 Aligned_cols=42 Identities=36% Similarity=0.687 Sum_probs=34.2
Q ss_pred cccccccccccccceeecCCCCc-ccHhHHhhhccCCCCCCCCCcccc
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHt-FC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
+..|.|||+...+ ++...|||. -|+.|-. .-+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~D-CvfLeCGHmVtCt~CGk----rm~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRD-CVFLECGHMVTCTKCGK----RMNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcc-eEEeecCcEEeehhhcc----ccccCchHHHHHH
Confidence 6789999999998 788889996 6888843 3459999998644
No 83
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=91.56 E-value=0.2 Score=61.66 Aligned_cols=47 Identities=21% Similarity=0.383 Sum_probs=36.1
Q ss_pred ccccccccc--cccceeecCCCCcccHhHHhhhcc------CCCCCCCCCcccce
Q 000801 25 GRCGICMDV--VIDRGVLDCCQHWFCFACIDNWST------ITNLCPLCQGEFQL 71 (1279)
Q Consensus 25 d~CpICLE~--f~D~~vL~pCgHtFC~sCIq~WlK------~~nSCPLCRqeFs~ 71 (1279)
+.|..|... |.+...++.|...||+.||+.-+. ..+.||.|.....+
T Consensus 254 ~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~~i 308 (613)
T KOG4299|consen 254 DFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKSVI 308 (613)
T ss_pred HHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeeeec
Confidence 489999864 555567788999999999998643 36889999765443
No 84
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.14 E-value=0.062 Score=62.86 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=37.6
Q ss_pred Ccccccccccccccc---eeecCCCCcccHhHHhhhccC--CCCCCCCCcccc
Q 000801 23 ECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQ 70 (1279)
Q Consensus 23 EDd~CpICLE~f~D~---~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs 70 (1279)
-+..|+.|.+.+..+ ....+|.|+||..|+...+.+ ..+||.||.-.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 357899999987533 345689999999999988754 678999995444
No 85
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=91.12 E-value=0.11 Score=59.80 Aligned_cols=50 Identities=20% Similarity=0.436 Sum_probs=41.5
Q ss_pred CCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 21 NFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
.-....|+||+....++.++..-|..||+.||-.+......||+-..+..
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 34456899999998887777778999999999999999999998655443
No 86
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=91.07 E-value=0.21 Score=52.89 Aligned_cols=54 Identities=19% Similarity=0.485 Sum_probs=38.5
Q ss_pred cCCCcccccccccccccceeecCCCC---cccHhHHhhhccC--CCCCCCCCcccceee
Q 000801 20 LNFECGRCGICMDVVIDRGVLDCCQH---WFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~~vL~pCgH---tFC~sCIq~WlK~--~nSCPLCRqeFs~I~ 73 (1279)
.+..+..|-||++.......+-.|.. +-|..|+++|... ...|++|+.+|....
T Consensus 4 ~s~~~~~CRIC~~~~~~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~ 62 (162)
T PHA02825 4 VSLMDKCCWICKDEYDVVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKK 62 (162)
T ss_pred cCCCCCeeEecCCCCCCccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEE
Confidence 34556799999987543222223445 5699999999854 678999999998654
No 87
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=91.00 E-value=0.096 Score=60.42 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=36.7
Q ss_pred CCccccccccccc--ccc-eeecCCCCcccHhHHhhhccC-CCCCCCCCcccc
Q 000801 22 FECGRCGICMDVV--IDR-GVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~f--~D~-~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeFs 70 (1279)
++++.||.|++.+ .|+ -.+-+||...|..|...-.+. ...||.||.-|.
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 4567899999975 343 355689999999996554444 668999998764
No 88
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=0.22 Score=55.81 Aligned_cols=52 Identities=13% Similarity=0.174 Sum_probs=44.6
Q ss_pred CCcccccccccccccc---eeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 22 FECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~---~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
+....||||.+.+.+. .++.+|+|.||..|.++.......||+|.....--.
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 3677899999999764 578899999999999999999999999998876433
No 89
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.29 E-value=0.15 Score=56.70 Aligned_cols=48 Identities=31% Similarity=0.773 Sum_probs=35.6
Q ss_pred cccccccccc-ccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceeee
Q 000801 25 GRCGICMDVV-IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (1279)
Q Consensus 25 d~CpICLE~f-~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~ 74 (1279)
..|..|..-- .++-.+..|.|+||..|...... ..||+|+..+..+..
T Consensus 4 VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l 52 (233)
T KOG4739|consen 4 VHCNKCFRFPSQDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQL 52 (233)
T ss_pred EEeccccccCCCCceeeeechhhhhhhhcccCCc--cccccccceeeeeec
Confidence 4688776543 44467899999999999765442 289999999776553
No 90
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=89.99 E-value=0.24 Score=57.46 Aligned_cols=58 Identities=26% Similarity=0.472 Sum_probs=46.4
Q ss_pred CcccccCCCcccccccccccccceeecCCCCcccHhHHhhh--ccCCCCCCCCCcccceee
Q 000801 15 TENDLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW--STITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 15 sedD~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~W--lK~~nSCPLCRqeFs~I~ 73 (1279)
++.+.++.+...|-||-+.++- ..+.||+|..|..|.-+. +.....||+||.+...+.
T Consensus 52 sSaddtDEen~~C~ICA~~~TY-s~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 52 SSADDTDEENMNCQICAGSTTY-SARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccccccccceeEEecCCceE-EEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 4556677788899999998775 567789999999998654 456889999999877544
No 91
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=89.96 E-value=0.15 Score=61.30 Aligned_cols=51 Identities=27% Similarity=0.711 Sum_probs=38.9
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCC-----CCCCC---CCcccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD-----PEGTC---EDTWLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPp-----le~VP---eGdWfCP~Crs~ 179 (1279)
.|.||-|. ...+.+.++.||.|+...|-.|.|.. ..... ...|||..|..+
T Consensus 121 iCcVClg~----rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 121 ICCVCLGQ----RSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred EEEEeecC----ccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 68999664 23455678999999999999999977 11122 357999999988
No 92
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.52 E-value=0.17 Score=66.12 Aligned_cols=55 Identities=20% Similarity=0.389 Sum_probs=39.9
Q ss_pred cCCCcccccccccc-cc-cceeecCCCCcccHhHHhhhccC----------CCCCCCCCcccceeee
Q 000801 20 LNFECGRCGICMDV-VI-DRGVLDCCQHWFCFACIDNWSTI----------TNLCPLCQGEFQLITC 74 (1279)
Q Consensus 20 ~ssEDd~CpICLE~-f~-D~~vL~pCgHtFC~sCIq~WlK~----------~nSCPLCRqeFs~I~~ 74 (1279)
..+.+++|-||+.. +. -+++-..|+|.||+.|-+.-+++ -.+||+|...+.++..
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~L 3548 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVL 3548 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHH
Confidence 34568899999975 32 23555679999999998654332 2479999998887663
No 93
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=89.44 E-value=0.26 Score=43.08 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=21.7
Q ss_pred ccccccccccc---eeecCCCCcccHhHHhhhcc-CCCCCCCCCcccc
Q 000801 27 CGICMDVVIDR---GVLDCCQHWFCFACIDNWST-ITNLCPLCQGEFQ 70 (1279)
Q Consensus 27 CpICLE~f~D~---~vL~pCgHtFC~sCIq~WlK-~~nSCPLCRqeFs 70 (1279)
|++|.+.+... ..+-.|++.+|..|...-.+ ....||-||.+|.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 78999887321 23447999999999877665 4789999998763
No 94
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=88.85 E-value=0.17 Score=63.91 Aligned_cols=48 Identities=27% Similarity=0.555 Sum_probs=36.6
Q ss_pred CCcccccccccccccc--ee-ecCCCCcccHhHHhhhccC-------CCCCCCCCccc
Q 000801 22 FECGRCGICMDVVIDR--GV-LDCCQHWFCFACIDNWSTI-------TNLCPLCQGEF 69 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~--~v-L~pCgHtFC~sCIq~WlK~-------~nSCPLCRqeF 69 (1279)
.+...|.||++.+... .| ...|.|+||+.||..|+.. .+.||.|+...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4457899999987532 22 3468999999999999742 68999998543
No 95
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.75 E-value=0.033 Score=65.39 Aligned_cols=47 Identities=23% Similarity=0.428 Sum_probs=34.2
Q ss_pred CCcccccccccccc--cceeecCCCCcccHhHHhhhcc--------CCCCCCCCCcc
Q 000801 22 FECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWST--------ITNLCPLCQGE 68 (1279)
Q Consensus 22 sEDd~CpICLE~f~--D~~vL~pCgHtFC~sCIq~WlK--------~~nSCPLCRqe 68 (1279)
..-..|.||++... ......+|+|.||..|+..+-. ....||-|+..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 34567999999764 3356789999999999987642 14568776543
No 96
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=88.35 E-value=0.32 Score=51.51 Aligned_cols=51 Identities=33% Similarity=0.625 Sum_probs=34.2
Q ss_pred CcccccccccccccceeecCCC-------------CcccHhHHhhhcc-------------------------------C
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQ-------------HWFCFACIDNWST-------------------------------I 58 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~pCg-------------HtFC~sCIq~WlK-------------------------------~ 58 (1279)
++.+|+|||+.-++. +++-|. -.-|..|++++.+ .
T Consensus 1 ed~~CpICme~PHNA-VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (162)
T PF07800_consen 1 EDVTCPICMEHPHNA-VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQP 79 (162)
T ss_pred CCccCceeccCCCce-EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccc
Confidence 468999999998884 443332 1245678876632 0
Q ss_pred CCCCCCCCcccceeee
Q 000801 59 TNLCPLCQGEFQLITC 74 (1279)
Q Consensus 59 ~nSCPLCRqeFs~I~~ 74 (1279)
...||+||-.+..+..
T Consensus 80 ~L~CPLCRG~V~GWtv 95 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTV 95 (162)
T ss_pred cccCccccCceeceEE
Confidence 3469999988877664
No 97
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=87.87 E-value=0.12 Score=58.97 Aligned_cols=48 Identities=25% Similarity=0.800 Sum_probs=35.6
Q ss_pred cccccccccccccc--eeecCCCCcccHhHHhhhc------------------c-----CCCCCCCCCcccce
Q 000801 24 CGRCGICMDVVIDR--GVLDCCQHWFCFACIDNWS------------------T-----ITNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D~--~vL~pCgHtFC~sCIq~Wl------------------K-----~~nSCPLCRqeFs~ 71 (1279)
...|.||+-.|.+. .+...|-|+||+.|+-+++ . ....||+||..+..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 46799999988654 3567899999999985543 1 13469999987653
No 98
>PHA02862 5L protein; Provisional
Probab=87.87 E-value=0.31 Score=51.06 Aligned_cols=47 Identities=26% Similarity=0.655 Sum_probs=35.9
Q ss_pred cccccccccccccceeecCC-----CCcccHhHHhhhccC--CCCCCCCCccccee
Q 000801 24 CGRCGICMDVVIDRGVLDCC-----QHWFCFACIDNWSTI--TNLCPLCQGEFQLI 72 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pC-----gHtFC~sCIq~WlK~--~nSCPLCRqeFs~I 72 (1279)
++.|-||++.-.+. ..+| ..+-|..|+++|... ...|++|+.+|...
T Consensus 2 ~diCWIC~~~~~e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik 55 (156)
T PHA02862 2 SDICWICNDVCDER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK 55 (156)
T ss_pred CCEEEEecCcCCCC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence 36899999985442 2344 467899999999854 67899999998753
No 99
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=0.23 Score=57.01 Aligned_cols=46 Identities=33% Similarity=0.686 Sum_probs=33.9
Q ss_pred cccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 26 ~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
.|--|--.+..-+.+.+|.|.||+.|...-. ...||.|-..+..|.
T Consensus 92 fCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~--dK~Cp~C~d~VqrIe 137 (389)
T KOG2932|consen 92 FCDRCDFPIAIYGRMIPCKHVFCLECARSDS--DKICPLCDDRVQRIE 137 (389)
T ss_pred eecccCCcceeeecccccchhhhhhhhhcCc--cccCcCcccHHHHHH
Confidence 4666665555556778899999999975532 678999988776554
No 100
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=86.86 E-value=0.49 Score=58.85 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=21.4
Q ss_pred CCCCcccHhHHhhhccCCCCCCCCCccccee
Q 000801 42 CCQHWFCFACIDNWSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 42 pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I 72 (1279)
+-|-|||..|-.+-+.....|-+|-.....+
T Consensus 45 PtGpWfCrKCesqeraarvrCeLCP~kdGAL 75 (900)
T KOG0956|consen 45 PTGPWFCRKCESQERAARVRCELCPHKDGAL 75 (900)
T ss_pred CCCchhhhhhhhhhhhccceeecccCcccce
Confidence 3477899999766555578888886655443
No 101
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=0.36 Score=53.85 Aligned_cols=45 Identities=24% Similarity=0.533 Sum_probs=36.2
Q ss_pred ccccccccccccc-----eeecCCCCcccHhHHhhhccC-CCCCCCCCccc
Q 000801 25 GRCGICMDVVIDR-----GVLDCCQHWFCFACIDNWSTI-TNLCPLCQGEF 69 (1279)
Q Consensus 25 d~CpICLE~f~D~-----~vL~pCgHtFC~sCIq~WlK~-~nSCPLCRqeF 69 (1279)
..|.||-+.|... +....|||+||..|+...... ...||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 5799999887532 556679999999999887654 67899999875
No 102
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.38 E-value=0.25 Score=62.47 Aligned_cols=50 Identities=22% Similarity=0.479 Sum_probs=39.3
Q ss_pred cccCCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 18 DLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 18 D~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
..+-.....|.+|.-.+.-+.+.=.|+|.||.+|+. .....||.|+....
T Consensus 834 sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~ 883 (933)
T KOG2114|consen 834 SAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELR 883 (933)
T ss_pred ccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhh
Confidence 333344568999999888777777899999999998 55688999988544
No 103
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=86.21 E-value=0.18 Score=65.86 Aligned_cols=47 Identities=28% Similarity=0.707 Sum_probs=41.7
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcc
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqe 68 (1279)
.....|.||++.+++.+.+-.|+|.||-.|+..|......||.|+.-
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 45569999999998777777899999999999999999999999843
No 104
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=85.93 E-value=0.41 Score=62.03 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=40.4
Q ss_pred CCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 124 g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|.+|+ +...++||..|++-||+.|+.+|...+|...|.|--|..-
T Consensus 345 dhcrf~~---------d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~h 391 (1414)
T KOG1473|consen 345 DHCRFCH---------DLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNIH 391 (1414)
T ss_pred ccccccC---------cccceeecccCCceEEeeecCCccccCCCccchhhhhhhh
Confidence 4688883 2345799999999999999999999999999999999854
No 105
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=85.29 E-value=0.37 Score=45.35 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=25.6
Q ss_pred CCcccccccccccccc-eeecCCCCcccHhHHh
Q 000801 22 FECGRCGICMDVVIDR-GVLDCCQHWFCFACID 53 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~-~vL~pCgHtFC~sCIq 53 (1279)
.++..|++|...+... ...-||+|.||+.|+.
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 4567899999998654 3556899999999975
No 106
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.39 E-value=0.43 Score=55.71 Aligned_cols=46 Identities=26% Similarity=0.565 Sum_probs=35.0
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
.-...|.||++...+ ....+|||.-| |+.-. +....||+||+....
T Consensus 303 ~~p~lcVVcl~e~~~-~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~~ 348 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKS-AVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIRL 348 (355)
T ss_pred CCCCceEEecCCccc-eeeecCCcEEE--chHHH-hhCCCCchhHHHHHH
Confidence 456789999999988 66778999977 76443 334459999997664
No 107
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=83.95 E-value=0.48 Score=59.54 Aligned_cols=44 Identities=32% Similarity=0.785 Sum_probs=35.3
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhccC--CCCCCCCCcccc
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI--TNLCPLCQGEFQ 70 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~--~nSCPLCRqeFs 70 (1279)
..|.||++ .+.+++..|+|.||..|+...... ...||.||..+.
T Consensus 455 ~~c~ic~~--~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD--LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc--cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 445889999999999999875443 336999987654
No 108
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=83.89 E-value=0.39 Score=60.31 Aligned_cols=68 Identities=34% Similarity=0.444 Sum_probs=52.0
Q ss_pred cCccchhhHHHHHHHHhhccccccccccceeeeeehhhhchHHHHhhcccccccceeeccchhHHHHHHHHHHHH
Q 000801 1195 HDGVNLVSRKVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQYVDAA 1269 (1279)
Q Consensus 1195 ~d~~~sv~kkve~~ike~irplcksgvit~eqyrwav~ktt~kvmk~h~~ak~anflikeg~kvkkla~qyve~a 1269 (1279)
-|-..-++||----+|--|.|.+---=||.+.||=-|-|-.+||- |+.....| -.||.-|-..||..+
T Consensus 1044 ~~k~~~~q~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~--~s~s~~~~-----~s~~~n~~~~~~~~~ 1111 (1134)
T KOG0825|consen 1044 TDKKLQIQEKAAQEVKLAIKPFYQNKDITKEEYKEIVRKAVDKVC--HSKSGEVN-----STKVANLVKAYVDKY 1111 (1134)
T ss_pred hhHHHHHHHhhhhhcccccCCcCCCcccccHHHHHHhHHHHHHhh--hccccCcC-----hhhHHHHHHhhcccc
Confidence 334455666666678889999998888999999999999999996 44443322 368888888898765
No 109
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.18 E-value=0.69 Score=51.36 Aligned_cols=48 Identities=21% Similarity=0.495 Sum_probs=36.2
Q ss_pred CCcccccccccccccc-eeecCCCCcccHhHHhhhccC--------CCCCCCCCccc
Q 000801 22 FECGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTI--------TNLCPLCQGEF 69 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~-~vL~pCgHtFC~sCIq~WlK~--------~nSCPLCRqeF 69 (1279)
+..-.|..|.-.+... .+-..|.|.||..|+..|..+ ...||.|..++
T Consensus 48 DY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 48 DYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 4567899998877432 344569999999999999753 45799998764
No 110
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=82.58 E-value=0.38 Score=59.60 Aligned_cols=56 Identities=23% Similarity=0.513 Sum_probs=39.3
Q ss_pred ccCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCC-CCCcccCCcCCCC
Q 000801 120 CLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGT-CEDTWLCPRCVAE 179 (1279)
Q Consensus 120 CsD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~V-PeGdWfCP~Crs~ 179 (1279)
|..+.+|.+|+.. + .+.+..|+.|..|..-||.||+....... =.+-|.||.|+--
T Consensus 15 ~~~~~mc~l~~s~---G-~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvC 71 (694)
T KOG4443|consen 15 IIVCLMCPLCGSS---G-KGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVC 71 (694)
T ss_pred hhhhhhhhhhccc---c-ccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceee
Confidence 3445678899543 2 23556799999999999999999664322 1234999999754
No 111
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=80.82 E-value=0.95 Score=40.73 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=33.7
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
...|-.|...-.. ..+.+|+|..|..|..-+ +-+.||.|..+|..
T Consensus 7 ~~~~~~~~~~~~~-~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTK-GTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccc-cccccccceeeccccChh--hccCCCCCCCcccC
Confidence 3467677666444 678889999999996553 46789999998764
No 112
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=80.58 E-value=0.85 Score=48.87 Aligned_cols=52 Identities=23% Similarity=0.539 Sum_probs=37.6
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCCC------CCCCCCc--ccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDP------EGTCEDT--WLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPpl------e~VPeGd--WfCP~Crs~ 179 (1279)
.|.+|+.. +++.+...|++|-+|-..||-.|||+-. .-+.++. ..|..|...
T Consensus 1 ~C~~C~~~---g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYE---GDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCC---CCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 37888533 4555667899999999999999999983 2233333 368888765
No 113
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=79.81 E-value=1.3 Score=57.18 Aligned_cols=51 Identities=29% Similarity=0.677 Sum_probs=41.0
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
+...|..|... ..+..+ .|++|+..||.+|..+++..++.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKG------KEEKLL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccC------CCccce-ecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 34457788422 223344 9999999999999999999999999999999876
No 114
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=79.48 E-value=0.6 Score=55.64 Aligned_cols=44 Identities=16% Similarity=0.442 Sum_probs=27.9
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcc
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqe 68 (1279)
...++|..|...+....+-.-=+..||-.|.+.-++. |-.|...
T Consensus 300 v~CFtC~~C~r~L~Gq~FY~v~~k~~CE~cyq~tlek---C~~Cg~~ 343 (468)
T KOG1701|consen 300 VQCFTCRTCRRQLAGQSFYQVDGKPYCEGCYQDTLEK---CNKCGEP 343 (468)
T ss_pred ccceehHhhhhhhccccccccCCcccchHHHHHHHHH---HhhhhhH
Confidence 4567888888877655443334677888887665543 5555543
No 115
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.88 E-value=0.84 Score=58.29 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=27.0
Q ss_pred CCcccccccccccccce-eecCCCCcccHhHHhhh
Q 000801 22 FECGRCGICMDVVIDRG-VLDCCQHWFCFACIDNW 55 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~-vL~pCgHtFC~sCIq~W 55 (1279)
..+++|.+|...+..++ .+-+|||.||..||.+.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~ 849 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRH 849 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHH
Confidence 45689999999875444 56689999999999654
No 116
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.44 E-value=1.2 Score=48.21 Aligned_cols=50 Identities=30% Similarity=0.596 Sum_probs=34.6
Q ss_pred CCcccccccccccccc------eeecCCCCcccHhHHhhhccC-----------CCCCCCCCcccce
Q 000801 22 FECGRCGICMDVVIDR------GVLDCCQHWFCFACIDNWSTI-----------TNLCPLCQGEFQL 71 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~WlK~-----------~nSCPLCRqeFs~ 71 (1279)
++-..|+||+..--+. +--..|+..||.-|+..|+.. -..||.|-.++..
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4456788888653221 222379999999999999854 2369999877653
No 117
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=77.11 E-value=1 Score=39.24 Aligned_cols=42 Identities=24% Similarity=0.538 Sum_probs=23.0
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhc-----cCCCCCCCCCc
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWS-----TITNLCPLCQG 67 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~Wl-----K~~nSCPLCRq 67 (1279)
+.|+|....+..++....|.|.-|++ +..|+ ...+.||.|.+
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 68999999998888888999998764 33333 23678999976
No 118
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=76.22 E-value=1.9 Score=54.60 Aligned_cols=37 Identities=0% Similarity=-0.179 Sum_probs=33.5
Q ss_pred cccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 143 TSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 143 ~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
.+.+|++|+..||.+|+.|....++..-|.|..|...
T Consensus 188 k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~~ 224 (696)
T KOG0383|consen 188 KLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKGA 224 (696)
T ss_pred cccccccchhhhhheeccccccccchhhhhhcccccc
Confidence 3578889999999999999998899999999999876
No 119
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=73.89 E-value=1.4 Score=45.75 Aligned_cols=37 Identities=27% Similarity=0.529 Sum_probs=27.3
Q ss_pred ccccccccccccc--ceeecCCC------CcccHhHHhhhccCCC
Q 000801 24 CGRCGICMDVVID--RGVLDCCQ------HWFCFACIDNWSTITN 60 (1279)
Q Consensus 24 Dd~CpICLE~f~D--~~vL~pCg------HtFC~sCIq~WlK~~n 60 (1279)
...|.||++.+.+ ..+..+|+ |.||..|+.+|.....
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~ 70 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERN 70 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhcc
Confidence 4689999998866 34445565 5699999999964433
No 120
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=71.16 E-value=2.4 Score=44.13 Aligned_cols=49 Identities=31% Similarity=0.887 Sum_probs=38.1
Q ss_pred Ccccccccccccccceee---cCCCCcccHhHHhh-hc--cCCCCCCCCCcccce
Q 000801 23 ECGRCGICMDVVIDRGVL---DCCQHWFCFACIDN-WS--TITNLCPLCQGEFQL 71 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL---~pCgHtFC~sCIq~-Wl--K~~nSCPLCRqeFs~ 71 (1279)
.--.|.||.+...+...+ ..||...|..|--. |. .....||.|+..|..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 345799999988765444 37999999999765 74 347889999999875
No 121
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=69.93 E-value=3.7 Score=49.60 Aligned_cols=51 Identities=31% Similarity=0.635 Sum_probs=33.9
Q ss_pred cCcCCCCCccccCCCCccccccCCCCcccccccc--------CCCCCC---CCCCcccCCcCCCC
Q 000801 126 CKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCV--------GFDPEG---TCEDTWLCPRCVAE 179 (1279)
Q Consensus 126 C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CL--------gPple~---VPeGdWfCP~Crs~ 179 (1279)
|.||... .+..|.-.-+.||.|+.|.|+.|. |+...+ ..++.++|..|...
T Consensus 131 C~iC~kf---D~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 131 CCICSKF---DDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred ccccCCc---ccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 6667442 233344456889999999999994 222221 23668999999876
No 122
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=69.31 E-value=2 Score=51.35 Aligned_cols=33 Identities=27% Similarity=0.534 Sum_probs=28.0
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhh
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW 55 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~W 55 (1279)
.|++.|+||..-|.+ +++.+|+|..|..|...-
T Consensus 2 eeelkc~vc~~f~~e-piil~c~h~lc~~ca~~~ 34 (699)
T KOG4367|consen 2 EEELKCPVCGSFYRE-PIILPCSHNLCQACARNI 34 (699)
T ss_pred cccccCceehhhccC-ceEeecccHHHHHHHHhh
Confidence 367899999999998 677889999999997643
No 123
>PF05418 Apo-VLDL-II: Apovitellenin I (Apo-VLDL-II); InterPro: IPR008404 This family consists of several avian apovitellenin I sequences. As part of the avian reproductive effort, large quantities of triglyceride-rich very-low-density lipoprotein (VLDL) particles are transported by receptor-mediated endocytosis into the female germ cells. Although the oocytes are surrounded by a layer of granulosa cells harbouring high levels of active lipoprotein lipase, non-lipolysed VLDL is transported into the yolk. This is because VLDL particles from laying chickens (Gallus gallus) are protected from lipolysis by apolipoprotein (apo)-VLDL-II, a potent dimeric lipoprotein lipase inhibitor []. Apo-VLDL-II is produced in the liver and secreted into the blood stream when induced by estrogen production in female birds.; GO: 0004857 enzyme inhibitor activity, 0006629 lipid metabolic process, 0042627 chylomicron
Probab=68.75 E-value=2.1 Score=40.71 Aligned_cols=40 Identities=40% Similarity=0.535 Sum_probs=28.9
Q ss_pred hhhhchHHHHhhccccc-------ccceeeccchhHHHHHHHHHHHH
Q 000801 1230 AVAKTTDKVMKYHSNAK-------NANFLIKEGEKVKKLAEQYVDAA 1269 (1279)
Q Consensus 1230 av~ktt~kvmk~h~~ak-------~anflikeg~kvkkla~qyve~a 1269 (1279)
||-|-.-||-.|-.++- --||||+|-.|+-.||||-||.-
T Consensus 25 avNkvsPr~~qfL~d~~Q~~vv~g~Rn~lirEt~k~sil~Eql~EKi 71 (82)
T PF05418_consen 25 AVNKVSPRVGQFLLDASQTPVVVGTRNFLIRETSKLSILAEQLVEKI 71 (82)
T ss_pred HHHccChhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555554443 24899999999999999999965
No 124
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=68.54 E-value=2.9 Score=48.31 Aligned_cols=52 Identities=23% Similarity=0.471 Sum_probs=37.3
Q ss_pred ccCCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 19 LLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 19 ~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
+...+-+.||||.+.+..+..--.=||.-|..|-. +..+.||.||.++..+.
T Consensus 43 ~~~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~---~~~~~CP~Cr~~~g~~R 94 (299)
T KOG3002|consen 43 LLDLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRT---KVSNKCPTCRLPIGNIR 94 (299)
T ss_pred ccchhhccCchhhccCcccceecCCCcEehhhhhh---hhcccCCccccccccHH
Confidence 34456678999999988632221227999999954 45788999999887543
No 125
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=68.31 E-value=3.9 Score=34.74 Aligned_cols=39 Identities=21% Similarity=0.554 Sum_probs=21.5
Q ss_pred ccccccccccceeec--CCCCcccHhHHhhhccCCC--CCCCC
Q 000801 27 CGICMDVVIDRGVLD--CCQHWFCFACIDNWSTITN--LCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~~vL~--pCgHtFC~sCIq~WlK~~n--SCPLC 65 (1279)
|.+|.+.+....... .|+-.+|..|+..+..... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 778998876422333 5999999999999765533 69988
No 126
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=68.24 E-value=3.9 Score=48.32 Aligned_cols=52 Identities=23% Similarity=0.595 Sum_probs=33.5
Q ss_pred cCCCccccccccccccccee----------------ecCC-----CCcccHhHHhhhc-------------cCCCCCCCC
Q 000801 20 LNFECGRCGICMDVVIDRGV----------------LDCC-----QHWFCFACIDNWS-------------TITNLCPLC 65 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~~v----------------L~pC-----gHtFC~sCIq~Wl-------------K~~nSCPLC 65 (1279)
...+.+.|--|+..-.+... ..+| .-..|..|+-+|. ..+-.||.|
T Consensus 267 ~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtC 346 (358)
T PF10272_consen 267 SGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTC 346 (358)
T ss_pred CccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCC
Confidence 34677899999875432111 1133 3445889998874 235689999
Q ss_pred Ccccce
Q 000801 66 QGEFQL 71 (1279)
Q Consensus 66 RqeFs~ 71 (1279)
|+.|-.
T Consensus 347 Ra~FCi 352 (358)
T PF10272_consen 347 RAKFCI 352 (358)
T ss_pred ccccee
Confidence 999864
No 127
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=67.56 E-value=0.82 Score=42.04 Aligned_cols=52 Identities=19% Similarity=0.292 Sum_probs=20.6
Q ss_pred CcCcCCCCCccccCCCCccccccC--CCCccccccccCCCCCC-------CCCCcccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEG-------TCEDTWLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCD--sCDrayH~~CLgPple~-------VPeGdWfCP~Crs~ 179 (1279)
.|.||... ..+.++...+.|+ .|...||..||--.+.. ...-.+-||.|...
T Consensus 4 ~C~IC~~~---~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSY---RLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--S---S-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcE---ecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 58899433 2222333468898 99999999998765211 11123569999876
No 128
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.54 E-value=1.8 Score=49.04 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=36.4
Q ss_pred Ccccccccccccccc---eeecCC-----CCcccHhHHhhhccC--------CCCCCCCCcccce
Q 000801 23 ECGRCGICMDVVIDR---GVLDCC-----QHWFCFACIDNWSTI--------TNLCPLCQGEFQL 71 (1279)
Q Consensus 23 EDd~CpICLE~f~D~---~vL~pC-----gHtFC~sCIq~WlK~--------~nSCPLCRqeFs~ 71 (1279)
-+..|=||+..-.|. .+..|| .|+.|..|+..|... ...||.|+.+|..
T Consensus 19 ~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii 83 (293)
T KOG3053|consen 19 LERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII 83 (293)
T ss_pred cceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence 357899999865442 355566 488999999999631 4579999998764
No 129
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=2.2 Score=48.95 Aligned_cols=36 Identities=25% Similarity=0.565 Sum_probs=26.9
Q ss_pred CCCcccccccccccccceeecCC----CCcccHhHHhhhcc
Q 000801 21 NFECGRCGICMDVVIDRGVLDCC----QHWFCFACIDNWST 57 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~~vL~pC----gHtFC~sCIq~WlK 57 (1279)
....++|.+|.+.+.|.-++. | .|.|||.|-+...+
T Consensus 265 ~~apLcCTLC~ERLEDTHFVQ-CPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 265 PSAPLCCTLCHERLEDTHFVQ-CPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred CCCceeehhhhhhhccCceee-cCCCcccceecccCHHHHH
Confidence 355689999999998753332 4 69999999877654
No 130
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=66.37 E-value=3 Score=37.51 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=25.7
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFD 162 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPp 162 (1279)
...|.+|+..+.. .+.++.|..|...||..|+..-
T Consensus 5 ~~~C~~Cg~~~~~-----~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 5 GCKCPVCGKKFKD-----GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred CccChhhCCcccC-----CCCEEECCCCCCcccHHHHhhC
Confidence 3469999654322 2347899999999999998544
No 131
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=65.41 E-value=7.8 Score=41.90 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred CccccccCCCCccccccccCCCC
Q 000801 141 LDTSIACDSCDLWYHAFCVGFDP 163 (1279)
Q Consensus 141 ED~LLLCDsCDrayH~~CLgPpl 163 (1279)
+.+|+-|..|-++||+..|.++.
T Consensus 121 ~nVLFRC~~C~RawH~~HLP~~~ 143 (175)
T PF15446_consen 121 DNVLFRCTSCHRAWHFEHLPPPS 143 (175)
T ss_pred hheEEecCCccceeehhhCCCCc
Confidence 45788899999999999998873
No 132
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.01 E-value=3 Score=49.04 Aligned_cols=47 Identities=19% Similarity=0.379 Sum_probs=30.7
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
.|.||-.....+ +.-.+| -|...||..|+++++..- .-+||.|....
T Consensus 231 ~CaIClEdY~~G---dklRiL---PC~H~FH~~CIDpWL~~~---r~~CPvCK~di 277 (348)
T KOG4628|consen 231 TCAICLEDYEKG---DKLRIL---PCSHKFHVNCIDPWLTQT---RTFCPVCKRDI 277 (348)
T ss_pred eEEEeecccccC---CeeeEe---cCCCchhhccchhhHhhc---CccCCCCCCcC
Confidence 699994332222 212233 577799999999997321 23899999873
No 133
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=63.14 E-value=2.2 Score=48.04 Aligned_cols=49 Identities=27% Similarity=0.653 Sum_probs=35.3
Q ss_pred CCccccccccccc-ccc---eeecC-CCCcccHhHHhh-hccCCCCCC--CCCcccc
Q 000801 22 FECGRCGICMDVV-IDR---GVLDC-CQHWFCFACIDN-WSTITNLCP--LCQGEFQ 70 (1279)
Q Consensus 22 sEDd~CpICLE~f-~D~---~vL~p-CgHtFC~sCIq~-WlK~~nSCP--LCRqeFs 70 (1279)
.++..||||.... -++ ..+.| |.|..|-.|..+ +......|| -|..-+.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILR 64 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILR 64 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHH
Confidence 4567999998753 222 23445 999999999987 455678899 7876544
No 134
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=62.75 E-value=4.7 Score=46.48 Aligned_cols=45 Identities=24% Similarity=0.585 Sum_probs=33.9
Q ss_pred cccccccc-cccc---eeecCCCCcccHhHHhhh-ccCCCCCCCCCcccc
Q 000801 26 RCGICMDV-VIDR---GVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQ 70 (1279)
Q Consensus 26 ~CpICLE~-f~D~---~vL~pCgHtFC~sCIq~W-lK~~nSCPLCRqeFs 70 (1279)
.||+|... +.++ ..+.+|+|..|-.|.... ..+.-.||.|.....
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLR 51 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILR 51 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhh
Confidence 59999865 3332 455699999999999874 566889999976544
No 135
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=62.00 E-value=3.9 Score=45.42 Aligned_cols=47 Identities=21% Similarity=0.558 Sum_probs=39.3
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccce
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
-.|.+|...+--...+.+|+-.||..|++.+......||.|..-|..
T Consensus 182 k~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~w~h 228 (235)
T KOG4718|consen 182 KNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDLWTH 228 (235)
T ss_pred HHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhcccCc
Confidence 58999999865435677899999999999999889999999776653
No 136
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=60.58 E-value=3.8 Score=35.28 Aligned_cols=39 Identities=21% Similarity=0.750 Sum_probs=25.3
Q ss_pred ccccccccccc-eeecCCC--C---cccHhHHhhhcc--CCCCCCCC
Q 000801 27 CGICMDVVIDR-GVLDCCQ--H---WFCFACIDNWST--ITNLCPLC 65 (1279)
Q Consensus 27 CpICLE~f~D~-~vL~pCg--H---tFC~sCIq~WlK--~~nSCPLC 65 (1279)
|-||++..... ..+.+|. - ..|..|+..|.. ....|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 77999875432 3555554 3 789999999986 46779887
No 137
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=57.31 E-value=3.2 Score=46.97 Aligned_cols=46 Identities=24% Similarity=0.530 Sum_probs=23.0
Q ss_pred Ccccccccccccccceeec-----CCCCcccHhHHhhhccCCCCCCCCCccc
Q 000801 23 ECGRCGICMDVVIDRGVLD-----CCQHWFCFACIDNWSTITNLCPLCQGEF 69 (1279)
Q Consensus 23 EDd~CpICLE~f~D~~vL~-----pCgHtFC~sCIq~WlK~~nSCPLCRqeF 69 (1279)
....||||...-.- .++. .-.|.+|..|-..|.-....||.|...-
T Consensus 171 ~~g~CPvCGs~P~~-s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 171 QRGYCPVCGSPPVL-SVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNTD 221 (290)
T ss_dssp T-SS-TTT---EEE-EEEE------EEEEEETTT--EEE--TTS-TTT---S
T ss_pred cCCcCCCCCCcCce-EEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCCC
Confidence 34799999886321 1111 2368899999999999999999997653
No 138
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=56.82 E-value=6.5 Score=45.15 Aligned_cols=46 Identities=20% Similarity=0.451 Sum_probs=36.0
Q ss_pred CCccccccccccccc---ceeecCCCCcccHhHHhhhccCCCCCCCCCc
Q 000801 22 FECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1279)
Q Consensus 22 sEDd~CpICLE~f~D---~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRq 67 (1279)
.....||||.+.+.. .+...+|+|..|+.|++........||+|..
T Consensus 156 ~~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 156 SSEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred cccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 344569999987532 3556689999999999987766699999977
No 139
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.86 E-value=7.6 Score=42.74 Aligned_cols=40 Identities=25% Similarity=0.651 Sum_probs=29.5
Q ss_pred ccccccccccceeecCCCCc-ccHhHHhhhccCCCCCCCCCcccce
Q 000801 27 CGICMDVVIDRGVLDCCQHW-FCFACIDNWSTITNLCPLCQGEFQL 71 (1279)
Q Consensus 27 CpICLE~f~D~~vL~pCgHt-FC~sCIq~WlK~~nSCPLCRqeFs~ 71 (1279)
|-+|.+.-.. +.+.||.|. +|..|-.. ...||.|+.....
T Consensus 161 Cr~C~~~~~~-VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s 201 (207)
T KOG1100|consen 161 CRKCGEREAT-VLLLPCRHLCLCGICDES----LRICPICRSPKTS 201 (207)
T ss_pred ceecCcCCce-EEeecccceEeccccccc----CccCCCCcChhhc
Confidence 8888877554 778899975 88888433 4569999886543
No 140
>PLN02436 cellulose synthase A
Probab=54.51 E-value=10 Score=50.18 Aligned_cols=54 Identities=20% Similarity=0.453 Sum_probs=39.0
Q ss_pred cCCCcccccccccccccc------eeecCCCCcccHhHHhh-hccCCCCCCCCCcccceee
Q 000801 20 LNFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I~ 73 (1279)
.......|.||.+.+... ..+.-|+.-.|..|.+- ..+....||.|+..|....
T Consensus 32 ~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 32 QELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred cccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 344556999999986311 34556999999999864 3345889999999988543
No 141
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=54.34 E-value=6.3 Score=34.97 Aligned_cols=42 Identities=24% Similarity=0.880 Sum_probs=25.4
Q ss_pred cccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCccc
Q 000801 26 RCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEF 69 (1279)
Q Consensus 26 ~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeF 69 (1279)
.|--|+-. +++.+..=.|+.|..|+...+.....||+|..+.
T Consensus 4 nCKsCWf~--~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~L 45 (50)
T PF03854_consen 4 NCKSCWFA--NKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPL 45 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE-
T ss_pred cChhhhhc--CCCeeeecchhHHHHHHHHHhccccCCCcccCcC
Confidence 45555543 4345553359999999999999999999998764
No 142
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=54.10 E-value=4.2 Score=51.38 Aligned_cols=47 Identities=26% Similarity=0.587 Sum_probs=36.7
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhh---ccCCCCCCCCCccc
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNW---STITNLCPLCQGEF 69 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~W---lK~~nSCPLCRqeF 69 (1279)
.....|+||+..+..+ ....|.|.||..|+-.. ......||+|+...
T Consensus 19 ~k~lEc~ic~~~~~~p-~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~ 68 (684)
T KOG4362|consen 19 QKILECPICLEHVKEP-SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI 68 (684)
T ss_pred hhhccCCceeEEeecc-chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence 3457899999998884 67779999999998753 33467899998543
No 143
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.63 E-value=5.2 Score=50.10 Aligned_cols=40 Identities=25% Similarity=0.531 Sum_probs=30.0
Q ss_pred CCccccccccccccc---ceeecCCCCcccHhHHhhhccCCCCCC
Q 000801 22 FECGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCP 63 (1279)
Q Consensus 22 sEDd~CpICLE~f~D---~~vL~pCgHtFC~sCIq~WlK~~nSCP 63 (1279)
.+-..|+||+..|.. .++...|+|+.|..|.+..- +.+||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~ly--n~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLY--NASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHh--hccCC
Confidence 345789999887632 25667899999999987642 46788
No 144
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=52.49 E-value=6.4 Score=38.32 Aligned_cols=31 Identities=19% Similarity=0.398 Sum_probs=23.8
Q ss_pred CCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 148 DSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 148 DsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|...||+.|+.-.+... ...-.||.||..
T Consensus 50 g~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 50 GKCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred ccCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 3599999999998776432 234589999976
No 145
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=52.30 E-value=13 Score=49.26 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=40.4
Q ss_pred ccCCCcccccccccccccc------eeecCCCCcccHhHHhh-hccCCCCCCCCCcccceee
Q 000801 19 LLNFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 19 ~~ssEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I~ 73 (1279)
........|.||.+.+... ..+.-|+.-.|..|.+- ..+....||.|+.+|....
T Consensus 12 ~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~k 73 (1079)
T PLN02638 12 MKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHK 73 (1079)
T ss_pred ccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 3445566999999976321 34567899999999853 4456889999999988543
No 146
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=52.29 E-value=9.3 Score=45.91 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=22.3
Q ss_pred eeecCCCCcccHhHHhhhccCCCCCCCCCc
Q 000801 38 GVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1279)
Q Consensus 38 ~vL~pCgHtFC~sCIq~WlK~~nSCPLCRq 67 (1279)
.+.-.|+|.||+.|...|.... .|+.+..
T Consensus 179 ~v~C~~g~~FC~~C~~~~H~p~-~C~~~~~ 207 (444)
T KOG1815|consen 179 EVDCGCGHEFCFACGEESHSPV-SCPGAKK 207 (444)
T ss_pred ceeCCCCchhHhhccccccCCC-cccchHH
Confidence 4556799999999999998654 6776643
No 147
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=52.03 E-value=13 Score=49.24 Aligned_cols=42 Identities=31% Similarity=0.275 Sum_probs=34.9
Q ss_pred ccccccCCCCCCcccCCCCCCCCCcchhhhHHHHHHHHHHhhc
Q 000801 823 YPLLARLPADMKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKA 865 (1279)
Q Consensus 823 ~pllaqlp~dmrp~l~~~~~nkvp~svrq~ql~r~~eh~l~k~ 865 (1279)
||-++-|=.|-.=.+.+..||. |++|=++-+|.|-|+--.++
T Consensus 956 ~~s~~~l~l~p~~~~~~~~~~g-~~~~p~~dv~~l~eq~~~~~ 997 (1051)
T KOG0955|consen 956 YPSYPALILDPKMPREGNFHNG-PDPAPPTDVLALPEQRTNKA 997 (1051)
T ss_pred CccchhhhcccccccccCccCC-CCCCCCcccccchHHHhccc
Confidence 8888888888777888999999 99999999998888765543
No 148
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=51.86 E-value=9.4 Score=49.01 Aligned_cols=58 Identities=24% Similarity=0.570 Sum_probs=40.8
Q ss_pred cccccCCCccccccccccc-ccceeecCCC-----CcccHhHHhhhccC--CCCCCCCCcccceee
Q 000801 16 ENDLLNFECGRCGICMDVV-IDRGVLDCCQ-----HWFCFACIDNWSTI--TNLCPLCQGEFQLIT 73 (1279)
Q Consensus 16 edD~~ssEDd~CpICLE~f-~D~~vL~pCg-----HtFC~sCIq~WlK~--~nSCPLCRqeFs~I~ 73 (1279)
++..-+.++..|-||...- .|-+...||. .+.|..|+.+|..- ...|-.|..+|..-.
T Consensus 4 ~~~~mN~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~ 69 (1175)
T COG5183 4 ENTPMNEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKD 69 (1175)
T ss_pred CCCCCCccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeee
Confidence 3344456678999998653 3334444554 45899999999864 778999998876533
No 149
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=50.00 E-value=8.2 Score=45.41 Aligned_cols=38 Identities=34% Similarity=0.754 Sum_probs=32.9
Q ss_pred cccccCCCCccccccc--cCCCCCCCC-CCcccCCcCCCCC
Q 000801 143 TSIACDSCDLWYHAFC--VGFDPEGTC-EDTWLCPRCVAEV 180 (1279)
Q Consensus 143 ~LLLCDsCDrayH~~C--LgPple~VP-eGdWfCP~Crs~~ 180 (1279)
.|+-|+.|..|||..| ++++..++| ...|+|..|....
T Consensus 74 ~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 74 LMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred hhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 6889999999999999 999976665 5689999998774
No 150
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=49.79 E-value=12 Score=36.10 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=21.0
Q ss_pred CCcccccccccccccc------eeecCCCCcccHhHHhh-hccCCCCCCCCCccccee
Q 000801 22 FECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLI 72 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I 72 (1279)
.....|.||-+.+... .....|+.-.|..|.+- .......||.|+..|...
T Consensus 7 ~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 7 LNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 4557899999976321 23456889999999874 445688999999887753
No 151
>PLN02189 cellulose synthase
Probab=49.17 E-value=13 Score=49.25 Aligned_cols=54 Identities=22% Similarity=0.450 Sum_probs=39.4
Q ss_pred cCCCccccccccccccc----c--eeecCCCCcccHhHHhh-hccCCCCCCCCCcccceee
Q 000801 20 LNFECGRCGICMDVVID----R--GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D----~--~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I~ 73 (1279)
.......|.||.+.+.. . ..+.-|+.-.|..|.+- ..+.+..||.|+..|....
T Consensus 30 ~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 30 RNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred ccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 44455699999998641 1 33456999999999864 3455889999999988543
No 152
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=49.01 E-value=5 Score=46.22 Aligned_cols=39 Identities=28% Similarity=0.634 Sum_probs=31.4
Q ss_pred CccccccCCCCccccccccCCCCC---CCCCCcccCCcCCCC
Q 000801 141 LDTSIACDSCDLWYHAFCVGFDPE---GTCEDTWLCPRCVAE 179 (1279)
Q Consensus 141 ED~LLLCDsCDrayH~~CLgPple---~VPeGdWfCP~Crs~ 179 (1279)
.+.||+|..|...+|-+|+..+.+ .+....|-|-.|..-
T Consensus 276 ~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC 317 (381)
T KOG1512|consen 276 RNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELC 317 (381)
T ss_pred hccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhh
Confidence 456899999999999999998843 345778999888643
No 153
>PLN02400 cellulose synthase
Probab=48.10 E-value=14 Score=49.00 Aligned_cols=54 Identities=24% Similarity=0.424 Sum_probs=39.5
Q ss_pred cCCCcccccccccccccc------eeecCCCCcccHhHHhh-hccCCCCCCCCCcccceee
Q 000801 20 LNFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 20 ~ssEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I~ 73 (1279)
.......|.||-+.+... ..+..|+---|..|.+- ..+....||.|+..|....
T Consensus 32 ~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~K 92 (1085)
T PLN02400 32 KNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHK 92 (1085)
T ss_pred cccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccccc
Confidence 344556999999976321 34567899999999853 3456889999999988543
No 154
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=46.98 E-value=9.4 Score=44.56 Aligned_cols=35 Identities=31% Similarity=0.730 Sum_probs=24.8
Q ss_pred cccccCCCCcc----------ccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 143 TSIACDSCDLW----------YHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 143 ~LLLCDsCDra----------yH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
.+.|||.||.. -|.|||.+-. -+.+-.||.|...+
T Consensus 89 ~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr---~~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 89 RVHFCDRCDFPIAIYGRMIPCKHVFCLECAR---SDSDKICPLCDDRV 133 (389)
T ss_pred ceEeecccCCcceeeecccccchhhhhhhhh---cCccccCcCcccHH
Confidence 46778888743 4888988873 22366899998773
No 155
>PHA02929 N1R/p28-like protein; Provisional
Probab=46.67 E-value=9.6 Score=42.94 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||........ ........=..|...||..|+...+...+ .||.|+..
T Consensus 173 ~~~eC~ICle~~~~~~-~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~ 225 (238)
T PHA02929 173 KDKECAICMEKVYDKE-IKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTP 225 (238)
T ss_pred CCCCCccCCcccccCc-cccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCE
Confidence 3457999954311100 00011112237888999999987764433 59999987
No 156
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.60 E-value=11 Score=45.13 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=36.9
Q ss_pred ccccccccccc--ccceeecCCCCcccHhHHhhhccC---CCCCCCCCcccc
Q 000801 24 CGRCGICMDVV--IDRGVLDCCQHWFCFACIDNWSTI---TNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f--~D~~vL~pCgHtFC~sCIq~WlK~---~nSCPLCRqeFs 70 (1279)
-+.|||=.+.- .+++....|||..|..-|.+..++ ...||.|.....
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 47899987754 356778889999999999987765 478999976544
No 157
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.48 E-value=11 Score=43.01 Aligned_cols=34 Identities=29% Similarity=0.496 Sum_probs=24.9
Q ss_pred ccccccccc-cc-c--cceeecCCCCcccHhHHhhhcc
Q 000801 24 CGRCGICMD-VV-I--DRGVLDCCQHWFCFACIDNWST 57 (1279)
Q Consensus 24 Dd~CpICLE-~f-~--D~~vL~pCgHtFC~sCIq~WlK 57 (1279)
...|++|.. .+ . ....+..|+|.||..|..-|..
T Consensus 95 ~~~ls~~~s~e~~~~~e~~~~y~~~~~f~i~~~~i~~~ 132 (271)
T COG5574 95 EETLSIEYSRETNIDKEGEVLYPCGIFFCIGCDYIWSI 132 (271)
T ss_pred ccccccccCcccccccccceeeecccccchhhhHHHHH
Confidence 456888887 22 1 1246778999999999998875
No 158
>PLN02400 cellulose synthase
Probab=46.26 E-value=14 Score=49.00 Aligned_cols=54 Identities=24% Similarity=0.533 Sum_probs=41.9
Q ss_pred cCCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 121 LDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 121 sD~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
.....|.||+.. .+-+.+.+..+.|..|.-..+..|... +..+|.=.||+|.+.
T Consensus 34 ~~gqiCqICGD~--VG~t~dGe~FVAC~eCaFPVCRpCYEY---ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 34 LNGQICQICGDD--VGVTETGDVFVACNECAFPVCRPCYEY---ERKDGTQCCPQCKTR 87 (1085)
T ss_pred cCCceeeecccc--cCcCCCCCEEEEEccCCCccccchhhe---ecccCCccCcccCCc
Confidence 345679999644 344556677899999999998899844 467888899999987
No 159
>KOG4430 consensus Topoisomerase I-binding arginine-serine-rich protein [Transcription]
Probab=45.99 E-value=41 Score=42.15 Aligned_cols=53 Identities=17% Similarity=0.316 Sum_probs=42.8
Q ss_pred CCcccccccccccc---cceeecCCCCcccHhHHhhhccCCCCCCCCCcccceeee
Q 000801 22 FECGRCGICMDVVI---DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITC 74 (1279)
Q Consensus 22 sEDd~CpICLE~f~---D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~~ 74 (1279)
.....|.+|+.... .++....|.|.+|+.|+..|......|+.|...|..+-.
T Consensus 258 ~~~~~~~~~~~~~~~~eqk~l~~~~~~~~g~tsl~~e~~~~~v~~~~~tk~~~~~~ 313 (553)
T KOG4430|consen 258 ENKNACGLCLSEADAKEQKGLEGNNQRQTGATSLMEEEAVESVCPLRVTKVRTISK 313 (553)
T ss_pred hcccchhhchhhHhHHHhhhhhhcccchhhhhhhhhhhhhhhhhhccccccccccc
Confidence 34567999987643 336677899999999999999999999999998886553
No 160
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=45.99 E-value=9.2 Score=48.69 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=30.7
Q ss_pred CCcccccccccc----cccceeecCCCCcccHhHHhh--hccCCCCCCCCCccc
Q 000801 22 FECGRCGICMDV----VIDRGVLDCCQHWFCFACIDN--WSTITNLCPLCQGEF 69 (1279)
Q Consensus 22 sEDd~CpICLE~----f~D~~vL~pCgHtFC~sCIq~--WlK~~nSCPLCRqeF 69 (1279)
+++..|-+|... -.+..+++.|.-..|..|... -....+.|-.|-...
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~gpWlCr~Calg~ 322 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPEGPWLCRTCALGI 322 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhhceeecCCCCeeehhccccC
Confidence 478899999876 344467777777777777432 223355576665553
No 161
>PF08343 RNR_N: Ribonucleotide reductase N-terminal; InterPro: IPR013554 This domain is found at the N terminus of bacterial ribonucleoside-diphosphate reductases (ribonucleotide reductases, RNRs) which catalyse the formation of deoxyribonucleotides []. It occurs together with the RNR all-alpha domain (IPR013509 from INTERPRO) and the RNR barrel domain (IPR000788 from INTERPRO). ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0006260 DNA replication, 0055114 oxidation-reduction process, 0005971 ribonucleoside-diphosphate reductase complex; PDB: 1PEM_A 2BQ1_E 1PEU_A 1PEQ_A 1PEO_A.
Probab=45.20 E-value=4.4 Score=38.94 Aligned_cols=49 Identities=29% Similarity=0.587 Sum_probs=30.4
Q ss_pred CccchhhH---HHHHHHHhhccccccccccceeeeeehhhhchHHHHhhcccccccceeeccchhHHHHHHHH
Q 000801 1196 DGVNLVSR---KVEAYIKEHIRPLCKSGIITAEQYRWAVAKTTDKVMKYHSNAKNANFLIKEGEKVKKLAEQY 1265 (1279)
Q Consensus 1196 d~~~sv~k---kve~~ike~irplcksgvit~eqyrwav~ktt~kvmk~h~~ak~anflikeg~kvkkla~qy 1265 (1279)
|+...+.| -|++|++|||.| +.|++||-..--++||++|=--+.+-+||
T Consensus 14 ~G~~~l~kD~eA~~~y~~~~V~p---------------------nt~~F~S~~Erl~yLv~~~YYe~~~l~~Y 65 (82)
T PF08343_consen 14 DGKIQLEKDKEAVRAYFKEHVNP---------------------NTVKFNSLKERLDYLVENDYYEKEVLDKY 65 (82)
T ss_dssp TS---THHHHHHHHHHHHHTTGG---------------------GB---SSHHHHHHHHHHTTSB-HHHHTTS
T ss_pred CCCcCchhHHHHHHHHHHHhccc---------------------ceeecCCHHHHHHHHHHcCcHHHHHHHhC
Confidence 34444444 578899999998 44788888888899999885444444444
No 162
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=45.18 E-value=20 Score=45.54 Aligned_cols=47 Identities=26% Similarity=0.385 Sum_probs=34.0
Q ss_pred CcCcCCCCCccccCCCCccccccCCCCccc-cccccCCCCCCCCCCcccCCcCCCC
Q 000801 125 GCKIRSGSMVAEESSNLDTSIACDSCDLWY-HAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 125 ~C~VC~Gs~~r~ddsnED~LLLCDsCDray-H~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
.|..|+.. +.+...||..|+... |..|-.|.. .+|.+.-||+.|-..
T Consensus 3 ~Cp~Cg~~-------n~~~akFC~~CG~~l~~~~Cp~CG~-~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 3 ICPQCQFE-------NPNNNRFCQKCGTSLTHKPCPQCGT-EVPVDEAHCPNCGAE 50 (645)
T ss_pred cCCCCCCc-------CCCCCccccccCCCCCCCcCCCCCC-CCCcccccccccCCc
Confidence 58888432 334457899998764 467888885 478888899999877
No 163
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=45.15 E-value=24 Score=43.28 Aligned_cols=33 Identities=33% Similarity=0.785 Sum_probs=19.0
Q ss_pred ccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCC
Q 000801 144 SIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181 (1279)
Q Consensus 144 LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~p 181 (1279)
|+||..|..--+.+|+..-. .-||||.|....+
T Consensus 5 L~fC~~C~~irc~~c~~~Ei-----~~~yCp~CL~~~p 37 (483)
T PF05502_consen 5 LYFCEHCHKIRCPRCVSEEI-----DSYYCPNCLFEVP 37 (483)
T ss_pred ceecccccccCChhhccccc-----ceeECccccccCC
Confidence 56666665555555554432 2577777766644
No 164
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.72 E-value=13 Score=44.34 Aligned_cols=42 Identities=26% Similarity=0.570 Sum_probs=28.6
Q ss_pred Ccccccccc-ccccc--ceeecCCCCcccHhHHhhhccC------CCCCCC
Q 000801 23 ECGRCGICM-DVVID--RGVLDCCQHWFCFACIDNWSTI------TNLCPL 64 (1279)
Q Consensus 23 EDd~CpICL-E~f~D--~~vL~pCgHtFC~sCIq~WlK~------~nSCPL 64 (1279)
....|.||+ +.... ......|+|.||..|+.+..+. ...||.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~ 195 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPH 195 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCC
Confidence 457899999 33221 1235679999999999876542 456765
No 166
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.11 E-value=11 Score=45.30 Aligned_cols=37 Identities=24% Similarity=0.438 Sum_probs=29.6
Q ss_pred CCcccccccccccccceeecCCCCcccHhHHhhhccC
Q 000801 22 FECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTI 58 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~ 58 (1279)
.....|.||.+.+........|+|.||..|+..+...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 4457899999987654566789999999999887643
No 167
>KOG1844 consensus PHD Zn-finger proteins [General function prediction only]
Probab=44.02 E-value=13 Score=44.68 Aligned_cols=39 Identities=28% Similarity=0.667 Sum_probs=32.7
Q ss_pred CccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 141 LDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 141 ED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
+..|+.|+.|..|=|.+|++..-... ...+.|..|....
T Consensus 98 ~g~~i~c~~c~~Wqh~~C~g~~~~~~-p~~y~c~~c~~~~ 136 (508)
T KOG1844|consen 98 EGLMIQCDWCGRWQHKICCGSFKSTK-PDKYVCEICTPRN 136 (508)
T ss_pred CceeeCCcccCcccCceeeeecCCCC-chhceeeeecccc
Confidence 57899999999999999999885444 3578899998873
No 168
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=43.96 E-value=14 Score=49.06 Aligned_cols=53 Identities=21% Similarity=0.523 Sum_probs=41.3
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||+.. .+-+.+.+..+.|..|.-+.+..|... +..+|.=.||+|.+.
T Consensus 16 ~~qiCqICGD~--vg~~~~Ge~FVAC~eC~FPVCrpCYEY---Er~eG~q~CPqCktr 68 (1079)
T PLN02638 16 GGQVCQICGDN--VGKTVDGEPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKTK 68 (1079)
T ss_pred CCceeeecccc--cCcCCCCCEEEEeccCCCccccchhhh---hhhcCCccCCccCCc
Confidence 45579999644 344556667899999999999999844 467888899999887
No 169
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.53 E-value=6 Score=45.36 Aligned_cols=56 Identities=20% Similarity=0.348 Sum_probs=35.9
Q ss_pred cCCCCcCcCCCCCccccCCCCccc---cccCCCCccccccccCCCCCCCCCCcccCCcCCCCC
Q 000801 121 LDGDGCKIRSGSMVAEESSNLDTS---IACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 121 sD~g~C~VC~Gs~~r~ddsnED~L---LLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~ 180 (1279)
.++..|.||++...... +++-+ .+=-+|+..||-+|+.-.- +=.-.-+||.|.++.
T Consensus 222 l~d~vCaVCg~~~~~s~--~eegvienty~LsCnHvFHEfCIrGWc--ivGKkqtCPYCKekV 280 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSV--DEEGVIENTYKLSCNHVFHEFCIRGWC--IVGKKQTCPYCKEKV 280 (328)
T ss_pred CCcchhHhhcchheeec--chhhhhhhheeeecccchHHHhhhhhe--eecCCCCCchHHHHh
Confidence 56678999977644322 22222 2223799999999988662 112245799999873
No 170
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=42.49 E-value=9.8 Score=44.25 Aligned_cols=46 Identities=20% Similarity=0.458 Sum_probs=32.8
Q ss_pred Cccccccccccccc---c--eeecCCCCcccHhHHhhhccCCCCCCCCCcc
Q 000801 23 ECGRCGICMDVVID---R--GVLDCCQHWFCFACIDNWSTITNLCPLCQGE 68 (1279)
Q Consensus 23 EDd~CpICLE~f~D---~--~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqe 68 (1279)
..-.||||...-.- . ..-..=.|.+|..|-..|.-....||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 34599999886321 0 0012234779999999999999999999764
No 171
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=42.41 E-value=23 Score=38.64 Aligned_cols=52 Identities=25% Similarity=0.646 Sum_probs=33.8
Q ss_pred ccccC-CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 118 VICLD-GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 118 viCsD-~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|.. +-.|++|....-. -.-+.+....|..|...||..|..-.. ||.|...
T Consensus 146 ~lC~~kGfiCe~C~~~~~I-fPF~~~~~~~C~~C~~v~H~~C~~~~~---------CpkC~R~ 198 (202)
T PF13901_consen 146 ELCQQKGFICEICNSDDII-FPFQIDTTVRCPKCKSVFHKSCFRKKS---------CPKCARR 198 (202)
T ss_pred HHHHhCCCCCccCCCCCCC-CCCCCCCeeeCCcCccccchhhcCCCC---------CCCcHhH
Confidence 34543 4469999543111 111224578899999999999999522 9999754
No 172
>PLN02436 cellulose synthase A
Probab=42.27 E-value=17 Score=48.19 Aligned_cols=53 Identities=23% Similarity=0.554 Sum_probs=40.8
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||+... +-+.+.+..+.|..|.-..+..|... +..+|.=.||+|.+.
T Consensus 35 ~~~iCqICGD~V--g~t~dGe~FVACn~C~fpvCr~Cyey---er~eg~~~Cpqckt~ 87 (1094)
T PLN02436 35 SGQTCQICGDEI--ELTVDGEPFVACNECAFPVCRPCYEY---ERREGNQACPQCKTR 87 (1094)
T ss_pred CCcccccccccc--CcCCCCCEEEeeccCCCccccchhhh---hhhcCCccCcccCCc
Confidence 455799996442 44455667899999999999999844 467788899999887
No 173
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=42.23 E-value=14 Score=47.30 Aligned_cols=39 Identities=26% Similarity=0.616 Sum_probs=28.6
Q ss_pred cccccccccccc-eeecCCCCcccHhHHhhhccCCCCCCC
Q 000801 26 RCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTITNLCPL 64 (1279)
Q Consensus 26 ~CpICLE~f~D~-~vL~pCgHtFC~sCIq~WlK~~nSCPL 64 (1279)
.|.||.-.++.- -++..|+|..|-.|...|......||.
T Consensus 1030 ~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeEeeEeeccchhhccccccccHHHHHHHHhcCCcCCC
Confidence 355554433321 245679999999999999999889996
No 174
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=41.82 E-value=9.6 Score=43.32 Aligned_cols=47 Identities=26% Similarity=0.383 Sum_probs=30.6
Q ss_pred CCcccccccccccccceeec--CCC-CcccHhHHhhhc--cCCCCCCCCCcc
Q 000801 22 FECGRCGICMDVVIDRGVLD--CCQ-HWFCFACIDNWS--TITNLCPLCQGE 68 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~~vL~--pCg-HtFC~sCIq~Wl--K~~nSCPLCRqe 68 (1279)
.+...|.-+...+..-+-++ .|. -|||+.|+.--. +..+.||.|+..
T Consensus 217 ~e~~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~ 268 (274)
T KOG1973|consen 217 DEPTYCICNQVSYGKMIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAE 268 (274)
T ss_pred CCCEEEEecccccccccccCCCCCCcceEEEeccccccCCCCcccchhhhhh
Confidence 45667843333344433344 499 999999986532 457999999864
No 175
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=40.76 E-value=6.4 Score=33.17 Aligned_cols=41 Identities=24% Similarity=0.578 Sum_probs=28.8
Q ss_pred ccccccccccc--ceeecCCCCcccHhHHhhhcc------CCCCCCCCC
Q 000801 26 RCGICMDVVID--RGVLDCCQHWFCFACIDNWST------ITNLCPLCQ 66 (1279)
Q Consensus 26 ~CpICLE~f~D--~~vL~pCgHtFC~sCIq~WlK------~~nSCPLCR 66 (1279)
.|.||.....+ ....+.|..+||..|+..-.. ..+.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 48899884322 245578999999999875432 267888875
No 176
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.57 E-value=8.7 Score=44.69 Aligned_cols=53 Identities=25% Similarity=0.569 Sum_probs=43.0
Q ss_pred cccCCCcccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 18 DLLNFECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 18 D~~ssEDd~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
+..-.....|-||...+.-+.....|.|.||+.|...|....+-||.|+....
T Consensus 99 A~~~~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 99 AGFQQDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKIS 151 (324)
T ss_pred ccccCCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcC
Confidence 34445567899999887765667789999999999999999999999987544
No 177
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.25 E-value=9.4 Score=40.08 Aligned_cols=43 Identities=33% Similarity=0.777 Sum_probs=26.6
Q ss_pred cccccccccc-cccceeecCCCC-------cccHhHHhhhc----cCCCCCCCCCcccce
Q 000801 24 CGRCGICMDV-VIDRGVLDCCQH-------WFCFACIDNWS----TITNLCPLCQGEFQL 71 (1279)
Q Consensus 24 Dd~CpICLE~-f~D~~vL~pCgH-------tFC~sCIq~Wl----K~~nSCPLCRqeFs~ 71 (1279)
+.+|.||+.. |.| .||| .||..|-.+.. +..+.|-+|+.....
T Consensus 65 datC~IC~KTKFAD-----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 65 DATCGICHKTKFAD-----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred Ccchhhhhhccccc-----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence 4699999875 444 3555 46666654432 125678888876543
No 178
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=39.02 E-value=17 Score=42.55 Aligned_cols=45 Identities=18% Similarity=0.536 Sum_probs=32.8
Q ss_pred Ccccccccccccccc----eeecCCCCcccHhHHhhhccCCCCCCCCCc
Q 000801 23 ECGRCGICMDVVIDR----GVLDCCQHWFCFACIDNWSTITNLCPLCQG 67 (1279)
Q Consensus 23 EDd~CpICLE~f~D~----~vL~pCgHtFC~sCIq~WlK~~nSCPLCRq 67 (1279)
..-.||||...-.-- ..-..=.|.+|..|-..|.-.+..||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467999998863210 011223577999999999999999999975
No 179
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=37.68 E-value=8.9 Score=32.61 Aligned_cols=41 Identities=20% Similarity=0.500 Sum_probs=20.2
Q ss_pred cCcCCCCCccccCCCCccccccC--CCCccccccccCCCCCCCCCCcccCCcC
Q 000801 126 CKIRSGSMVAEESSNLDTSIACD--SCDLWYHAFCVGFDPEGTCEDTWLCPRC 176 (1279)
Q Consensus 126 C~VC~Gs~~r~ddsnED~LLLCD--sCDrayH~~CLgPple~VPeGdWfCP~C 176 (1279)
|.+|....+.+ +.|. .|...+|.+|+.--....... .||.|
T Consensus 1 C~~C~~iv~~G--------~~C~~~~C~~r~H~~C~~~y~r~~~~~--~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG--------QRCSNRDCNVRLHDDCFKKYFRHRSNP--KCPNC 43 (43)
T ss_dssp -TTT-SB-SSS--------EE-SS--S--EE-HHHHHHHTTT-SS---B-TTT
T ss_pred CcccchhHeee--------ccCCCCccCchHHHHHHHHHHhcCCCC--CCcCC
Confidence 56775555444 5688 699999999988654333321 68877
No 180
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=37.29 E-value=23 Score=41.69 Aligned_cols=47 Identities=23% Similarity=0.500 Sum_probs=37.5
Q ss_pred cccccccccccc--c-ceeecCCCCcccHhHHhhhccCCCCCCCCCcccc
Q 000801 24 CGRCGICMDVVI--D-RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~--D-~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs 70 (1279)
...|+||.+... + ...+-+|++..|+.|...-.....+||.||..+.
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 368999999752 2 2456689999999999888888999999996654
No 181
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=37.28 E-value=22 Score=36.26 Aligned_cols=42 Identities=24% Similarity=0.422 Sum_probs=33.4
Q ss_pred ccccccccccccce-------------eecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 25 GRCGICMDVVIDRG-------------VLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 25 d~CpICLE~f~D~~-------------vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
..|--|+..|...+ ....|.+.||.+|-.-+.+.-..||-|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhhccCCcCCC
Confidence 46999998876432 2567999999999877888888899995
No 182
>PLN02195 cellulose synthase A
Probab=37.26 E-value=22 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=40.6
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
...|.||+... +-+.+.+..+.|..|.-+.+..|... +..+|.=-||+|.+.
T Consensus 6 ~~~c~~cgd~~--~~~~~g~~fvaC~eC~~pvCrpCyey---er~eg~q~CpqCkt~ 57 (977)
T PLN02195 6 APICATCGEEV--GVDSNGEAFVACHECSYPLCKACLEY---EIKEGRKVCLRCGGP 57 (977)
T ss_pred Cccceeccccc--CcCCCCCeEEEeccCCCccccchhhh---hhhcCCccCCccCCc
Confidence 45699996543 44455667899999999999999844 467888899999987
No 183
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.19 E-value=32 Score=30.82 Aligned_cols=40 Identities=25% Similarity=0.481 Sum_probs=22.8
Q ss_pred ccccccccccc---------eeecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 27 CGICMDVVIDR---------GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 27 CpICLE~f~D~---------~vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
|.-|+..|... -....|.+.||.+|=.=-.+.-..||-|.
T Consensus 2 CfgC~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPFPDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE-TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCCCCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55566666442 34567999999999655566777899984
No 184
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=36.53 E-value=26 Score=46.51 Aligned_cols=53 Identities=21% Similarity=0.456 Sum_probs=38.8
Q ss_pred CCCcccccccccccccc------eeecCCCCcccHhHHhh-hccCCCCCCCCCcccceee
Q 000801 21 NFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDN-WSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 21 ssEDd~CpICLE~f~D~------~vL~pCgHtFC~sCIq~-WlK~~nSCPLCRqeFs~I~ 73 (1279)
+.....|.||.+.+... ..+..|+.-.|..|.+- ..+....||.|+.+|....
T Consensus 12 ~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~ 71 (1044)
T PLN02915 12 SADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHK 71 (1044)
T ss_pred CCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhc
Confidence 34567899999976321 34567889999999853 3455889999999988533
No 185
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=36.19 E-value=10 Score=43.94 Aligned_cols=42 Identities=24% Similarity=0.610 Sum_probs=30.4
Q ss_pred CCcCcCCCCCccccCCCCccccccC-CCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 124 DGCKIRSGSMVAEESSNLDTSIACD-SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 124 g~C~VC~Gs~~r~ddsnED~LLLCD-sCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|.||.. ..-+-|. .|+..|+..|+.--+.. .-|||.|+..
T Consensus 26 lrC~IC~~----------~i~ip~~TtCgHtFCslCIR~hL~~----qp~CP~Cr~~ 68 (391)
T COG5432 26 LRCRICDC----------RISIPCETTCGHTFCSLCIRRHLGT----QPFCPVCRED 68 (391)
T ss_pred HHhhhhhh----------eeecceecccccchhHHHHHHHhcC----CCCCcccccc
Confidence 45889932 2234555 79999999999877644 3479999987
No 186
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=35.77 E-value=24 Score=46.94 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=41.0
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||+... +-+.+.+..+.|..|.-+.+..|+..- ..+|.-.||+|.+.
T Consensus 14 ~~~~c~iCGd~v--g~~~~Ge~FVAC~eC~fpvCr~cyeye---~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 14 DAKTCRVCGDEV--GVKEDGQPFVACHVCGFPVCKPCYEYE---RSEGNQCCPQCNTR 66 (1044)
T ss_pred Ccchhhcccccc--CcCCCCCEEEEeccCCCccccchhhhh---hhcCCccCCccCCc
Confidence 345699996543 445566678999999999999998444 67788899999887
No 187
>PLN02189 cellulose synthase
Probab=35.44 E-value=25 Score=46.66 Aligned_cols=53 Identities=26% Similarity=0.545 Sum_probs=40.3
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||+... +-+.+.+..+.|..|.-+.+..|... +..+|.=.||+|.+.
T Consensus 33 ~~~~C~iCgd~v--g~~~~g~~fvaC~~C~fpvCr~Cyey---er~eg~q~CpqCkt~ 85 (1040)
T PLN02189 33 DGQVCEICGDEI--GLTVDGDLFVACNECGFPVCRPCYEY---ERREGTQNCPQCKTR 85 (1040)
T ss_pred cCcccccccccc--CcCCCCCEEEeeccCCCccccchhhh---hhhcCCccCcccCCc
Confidence 445799996442 33345567799999999999999844 467788899999987
No 188
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=35.42 E-value=19 Score=42.93 Aligned_cols=41 Identities=27% Similarity=0.717 Sum_probs=29.5
Q ss_pred cccccccccccc-----cceeecCCCCcccHhHHhhhccCCCCCCCC
Q 000801 24 CGRCGICMDVVI-----DRGVLDCCQHWFCFACIDNWSTITNLCPLC 65 (1279)
Q Consensus 24 Dd~CpICLE~f~-----D~~vL~pCgHtFC~sCIq~WlK~~nSCPLC 65 (1279)
-..|++|.-.+. +..... |+|.||+.|...|......|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~Cr-C~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCR-CGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEee-ccccchhhcCcchhhCCccccCc
Confidence 467898887642 224455 99999999999998766666555
No 189
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.01 E-value=9.6 Score=36.75 Aligned_cols=53 Identities=23% Similarity=0.545 Sum_probs=25.3
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
....|.||+-. .+.+.+.+..+.|..|.-.....|+..- ..+|.-.||.|.+.
T Consensus 8 ~~qiCqiCGD~--VGl~~~Ge~FVAC~eC~fPvCr~CyEYE---rkeg~q~CpqCkt~ 60 (80)
T PF14569_consen 8 NGQICQICGDD--VGLTENGEVFVACHECAFPVCRPCYEYE---RKEGNQVCPQCKTR 60 (80)
T ss_dssp SS-B-SSS--B----B-SSSSB--S-SSS-----HHHHHHH---HHTS-SB-TTT--B
T ss_pred CCcccccccCc--cccCCCCCEEEEEcccCCccchhHHHHH---hhcCcccccccCCC
Confidence 45679999543 3555666788999999888777777654 45677789999876
No 190
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=33.81 E-value=10 Score=45.18 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=22.0
Q ss_pred CCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 149 SCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 149 sCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
-|+..+|..||.-..+..- -||.|+.+
T Consensus 317 pCGHilHl~CLknW~ERqQ----TCPICr~p 343 (491)
T COG5243 317 PCGHILHLHCLKNWLERQQ----TCPICRRP 343 (491)
T ss_pred cccceeeHHHHHHHHHhcc----CCCcccCc
Confidence 4888899999998875443 49999988
No 191
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=31.92 E-value=20 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=15.1
Q ss_pred hhhhhccccccccCCCCCCccc
Q 000801 674 LSRLYLADTSVFPRKDNIMPLS 695 (1279)
Q Consensus 674 lsrlylad~sv~prk~~ikpl~ 695 (1279)
..-||+||+||||.--..-|-.
T Consensus 114 ~~nL~V~DaSv~P~~~~~np~~ 135 (144)
T PF05199_consen 114 VRNLRVADASVFPTSPGANPTL 135 (144)
T ss_dssp SBSEEE-SGGGSSS-SSSSSHH
T ss_pred eeeEEECCCCcCCCCCCcCcHH
Confidence 3469999999999876665543
No 192
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.55 E-value=37 Score=39.00 Aligned_cols=50 Identities=16% Similarity=0.301 Sum_probs=37.0
Q ss_pred CCcccccccccccccc---eeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 22 FECGRCGICMDVVIDR---GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~---~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
.-.+.|||-.-.+... ..+.+|||.|-..-+.+.- ...|++|...|..-.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDD 161 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccC
Confidence 4567898876555433 6788999999988776643 678999999887533
No 193
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=30.45 E-value=10 Score=35.11 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=19.0
Q ss_pred CCCCccccccccCCCCCCCCCCcccCCcCC
Q 000801 148 DSCDLWYHAFCVGFDPEGTCEDTWLCPRCV 177 (1279)
Q Consensus 148 DsCDrayH~~CLgPple~VPeGdWfCP~Cr 177 (1279)
..|+..||..|+.-.+... ..||.|+
T Consensus 48 ~~C~H~FH~~Ci~~Wl~~~----~~CP~CR 73 (73)
T PF12678_consen 48 GPCGHIFHFHCISQWLKQN----NTCPLCR 73 (73)
T ss_dssp ETTSEEEEHHHHHHHHTTS----SB-TTSS
T ss_pred cccCCCEEHHHHHHHHhcC----CcCCCCC
Confidence 4699999999998765332 3799996
No 194
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=5.6 Score=47.41 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=40.0
Q ss_pred ccccccccccccc---ceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 24 CGRCGICMDVVID---RGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 24 Dd~CpICLE~f~D---~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
...|.||...+.. ...-..|+|.++..||.+|+.....||.|+.++..+.
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~ 248 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG 248 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence 4679999987742 2344569999999999999998999999998765543
No 195
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.81 E-value=30 Score=39.66 Aligned_cols=31 Identities=16% Similarity=0.174 Sum_probs=26.2
Q ss_pred cccccccccccccceeecCCCCcccHhHHhhh
Q 000801 24 CGRCGICMDVVIDRGVLDCCQHWFCFACIDNW 55 (1279)
Q Consensus 24 Dd~CpICLE~f~D~~vL~pCgHtFC~sCIq~W 55 (1279)
-++|..|+..+.+ +++.+=||.||..||-++
T Consensus 43 FdcCsLtLqPc~d-Pvit~~GylfdrEaILe~ 73 (303)
T KOG3039|consen 43 FDCCSLTLQPCRD-PVITPDGYLFDREAILEY 73 (303)
T ss_pred cceeeeecccccC-CccCCCCeeeeHHHHHHH
Confidence 3579999999998 566667999999999765
No 196
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=27.09 E-value=44 Score=28.90 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=22.7
Q ss_pred CCCCcchhhhHHHHHHHHHHhhcChhhh
Q 000801 843 NKIPISVRQTQLYRLTEFFLRKANLPVI 870 (1279)
Q Consensus 843 nkvp~svrq~ql~r~~eh~l~k~nl~~i 870 (1279)
++||.-|| ..|-+-+|.|-|..|+..|
T Consensus 10 ~~iP~fvR-~~~r~~~E~~Ar~~G~~~I 36 (45)
T PF08369_consen 10 DRIPFFVR-KKLRDAAEKYARERGYDEI 36 (45)
T ss_dssp CTS-HHHH-HHHHHHHHHHHHHCT-SEE
T ss_pred HHCCHHHH-HHHHHHHHHHHHHcCCCeE
Confidence 57899999 9999999999999998776
No 197
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=26.99 E-value=23 Score=41.87 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=13.9
Q ss_pred CCcccHhHHhhhccCCCCCCCCCcc
Q 000801 44 QHWFCFACIDNWSTITNLCPLCQGE 68 (1279)
Q Consensus 44 gHtFC~sCIq~WlK~~nSCPLCRqe 68 (1279)
+..||..|-.....--..||.|.-.
T Consensus 275 ~Gy~CP~CkakvCsLP~eCpiC~lt 299 (378)
T KOG2807|consen 275 GGYFCPQCKAKVCSLPIECPICSLT 299 (378)
T ss_pred CceeCCcccCeeecCCccCCcccee
Confidence 3456666644444445567777543
No 198
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.46 E-value=29 Score=40.49 Aligned_cols=29 Identities=24% Similarity=0.772 Sum_probs=21.2
Q ss_pred CCCcccHhHHhhhc-------------cCCCCCCCCCcccce
Q 000801 43 CQHWFCFACIDNWS-------------TITNLCPLCQGEFQL 71 (1279)
Q Consensus 43 CgHtFC~sCIq~Wl-------------K~~nSCPLCRqeFs~ 71 (1279)
|.-..|..|+-+|. ++.-.||+||+.|-.
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 44556788987774 346789999998864
No 199
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=26.18 E-value=34 Score=38.13 Aligned_cols=49 Identities=18% Similarity=0.523 Sum_probs=35.5
Q ss_pred cccccccccccccc---eeecCCC-----CcccHhHHhhhcc--CCCCCCCCCccccee
Q 000801 24 CGRCGICMDVVIDR---GVLDCCQ-----HWFCFACIDNWST--ITNLCPLCQGEFQLI 72 (1279)
Q Consensus 24 Dd~CpICLE~f~D~---~vL~pCg-----HtFC~sCIq~WlK--~~nSCPLCRqeFs~I 72 (1279)
+..|-||....... ....+|. +..|..|++.|.. ....|..|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence 47899999854311 2344443 5579999999986 578899998887754
No 200
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.80 E-value=22 Score=42.12 Aligned_cols=47 Identities=26% Similarity=0.582 Sum_probs=27.9
Q ss_pred CCcccccccccccccc--e--eecCCCCcc--------cHhHHhhhc-----cCCCCCCCCCcc
Q 000801 22 FECGRCGICMDVVIDR--G--VLDCCQHWF--------CFACIDNWS-----TITNLCPLCQGE 68 (1279)
Q Consensus 22 sEDd~CpICLE~f~D~--~--vL~pCgHtF--------C~sCIq~Wl-----K~~nSCPLCRqe 68 (1279)
..+..||+|.+.+..- + .+.+|...| ++.|+..-. ..+..||.||..
T Consensus 13 dl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQ 76 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQ 76 (475)
T ss_pred ccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHH
Confidence 3567899999986532 2 334554433 445554321 126789999853
No 201
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=25.05 E-value=49 Score=42.79 Aligned_cols=47 Identities=17% Similarity=0.328 Sum_probs=36.8
Q ss_pred cccccccccccccc-eeecCCCCcccHhHHhhhccCCCCCCC--CCcccc
Q 000801 24 CGRCGICMDVVIDR-GVLDCCQHWFCFACIDNWSTITNLCPL--CQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~D~-~vL~pCgHtFC~sCIq~WlK~~nSCPL--CRqeFs 70 (1279)
...|.+|...+... .++..|+|.-|..|+..|.....-||. |...-.
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAKSICPHLCH 828 (839)
T ss_pred hcCceeecceeeeeEeecccccccccHHHHHHHHhcCCCCccccCCcccc
Confidence 45788888776542 567789999999999999998888888 765433
No 202
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=24.74 E-value=43 Score=41.43 Aligned_cols=19 Identities=32% Similarity=0.724 Sum_probs=14.0
Q ss_pred ccccC--CCCccccccccCCC
Q 000801 144 SIACD--SCDLWYHAFCVGFD 162 (1279)
Q Consensus 144 LLLCD--sCDrayH~~CLgPp 162 (1279)
-+.|. .|-++||..|..-.
T Consensus 316 cIqCs~~nC~~aYHVtCArra 336 (669)
T COG5141 316 CIQCSYFNCTRAYHVTCARRA 336 (669)
T ss_pred eeeecccchhhhhhhhhhhhc
Confidence 35555 68899999997644
No 203
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.60 E-value=19 Score=42.22 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=32.3
Q ss_pred CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCCCC
Q 000801 123 GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEVP 181 (1279)
Q Consensus 123 ~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~~p 181 (1279)
+-.|.||...+... + ..+ --=|+..||..|+.-.+ -...--||.|++..|
T Consensus 323 GveCaICms~fiK~---d-~~~--vlPC~H~FH~~Cv~kW~---~~y~~~CPvCrt~iP 372 (374)
T COG5540 323 GVECAICMSNFIKN---D-RLR--VLPCDHRFHVGCVDKWL---LGYSNKCPVCRTAIP 372 (374)
T ss_pred CceEEEEhhhhccc---c-eEE--EeccCceechhHHHHHH---hhhcccCCccCCCCC
Confidence 34699996543221 1 122 22588899999998763 334557999999854
No 204
>PLN02195 cellulose synthase A
Probab=23.81 E-value=59 Score=43.26 Aligned_cols=47 Identities=21% Similarity=0.432 Sum_probs=35.1
Q ss_pred ccccccccccccc-----c-eeecCCCCcccHhHHhhh-ccCCCCCCCCCcccc
Q 000801 24 CGRCGICMDVVID-----R-GVLDCCQHWFCFACIDNW-STITNLCPLCQGEFQ 70 (1279)
Q Consensus 24 Dd~CpICLE~f~D-----~-~vL~pCgHtFC~sCIq~W-lK~~nSCPLCRqeFs 70 (1279)
...|.||.+.+.. . ..+.-|+.-.|..|.+-= .+.+..||.|+.+|.
T Consensus 6 ~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 6 APICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 4589999996531 1 345679999999998532 345788999999988
No 205
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.57 E-value=26 Score=44.08 Aligned_cols=54 Identities=20% Similarity=0.486 Sum_probs=32.7
Q ss_pred ccccC-CCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCCCCcccCCcCCCC
Q 000801 118 VICLD-GDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 118 viCsD-~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
..|.. +-.|.+|....-. -.-..+...-|+.|..+||..|+.-.... ||.|...
T Consensus 505 ~lC~~~gfiCe~Cq~~~ii-yPF~~~~~~rC~~C~avfH~~C~~r~s~~-------CPrC~R~ 559 (580)
T KOG1829|consen 505 DLCTGKGFICELCQHNDII-YPFETRNTRRCSTCLAVFHKKCLRRKSPC-------CPRCERR 559 (580)
T ss_pred hhhccCeeeeeeccCCCcc-cccccccceeHHHHHHHHHHHHHhccCCC-------CCchHHH
Confidence 33443 3458888322100 00112345679999999999999877421 9999654
No 206
>KOG1632 consensus Uncharacterized PHD Zn-finger protein [General function prediction only]
Probab=23.43 E-value=15 Score=43.23 Aligned_cols=52 Identities=27% Similarity=0.577 Sum_probs=35.9
Q ss_pred CCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCCCC-----CCcccCCcCCCCC
Q 000801 124 DGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTC-----EDTWLCPRCVAEV 180 (1279)
Q Consensus 124 g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~VP-----eGdWfCP~Crs~~ 180 (1279)
..|..|+.. ..+...+++|+.|..|||..|+.+....-. ....+|+.|....
T Consensus 240 ~~~~~cg~~-----~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~~ 296 (345)
T KOG1632|consen 240 LICDPCGLS-----DANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVLK 296 (345)
T ss_pred ccccccCcc-----hHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeecc
Confidence 457777432 122267899999999999999998842221 2348999998753
No 207
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=23.17 E-value=27 Score=43.90 Aligned_cols=41 Identities=20% Similarity=0.457 Sum_probs=26.3
Q ss_pred Ccccccccccc-----cc-c-ceeecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 23 ECGRCGICMDV-----VI-D-RGVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 23 EDd~CpICLE~-----f~-D-~~vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
....|.||... |. + ......|++.||..|+.. ...-||.|-
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---cCCCCCchH
Confidence 45678888532 21 1 133567999999999654 334499993
No 208
>PHA02926 zinc finger-like protein; Provisional
Probab=22.85 E-value=37 Score=38.52 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCCCcCcCCCCCccccCCCCccccccCCCCccccccccCCCCCC--CCCCcccCCcCCCC
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEG--TCEDTWLCPRCVAE 179 (1279)
Q Consensus 122 D~g~C~VC~Gs~~r~ddsnED~LLLCDsCDrayH~~CLgPple~--VPeGdWfCP~Crs~ 179 (1279)
....|.||...........+...-.=..|+..|+..|+.-.... .......||.|+..
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~ 228 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTR 228 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcce
Confidence 45679999432111000111111122367777777777655321 12336789999987
No 209
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=22.48 E-value=35 Score=34.13 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=20.8
Q ss_pred CCC---CccccccccCCC-----CCCCCCCcccCCcCCCC
Q 000801 148 DSC---DLWYHAFCVGFD-----PEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 148 DsC---DrayH~~CLgPp-----le~VPeGdWfCP~Crs~ 179 (1279)
..| ...|...||.-. .+-+....|.||.|+.-
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 566 666777775433 12345678999999863
No 210
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=22.36 E-value=17 Score=46.34 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=16.4
Q ss_pred ccccccCCCCCCCCCCcccCCcCCCC
Q 000801 154 YHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 154 yH~~CLgPple~VPeGdWfCP~Crs~ 179 (1279)
||.||-.|.......-+--||.|-+.
T Consensus 662 ~H~FC~~Cvq~r~etRqRKCP~Cn~a 687 (698)
T KOG0978|consen 662 GHVFCEECVQTRYETRQRKCPKCNAA 687 (698)
T ss_pred chHHHHHHHHHHHHHhcCCCCCCCCC
Confidence 56666555533334446679999876
No 211
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=21.66 E-value=23 Score=33.61 Aligned_cols=43 Identities=21% Similarity=0.600 Sum_probs=24.7
Q ss_pred ccccccccccccceeecCCCCcccHhHHhhhccCCCCCCCCCcccceee
Q 000801 25 GRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 25 d~CpICLE~f~D~~vL~pCgHtFC~sCIq~WlK~~nSCPLCRqeFs~I~ 73 (1279)
..||.|...+.- .. +|.+|..|-..+. ....||-|.+++..+.
T Consensus 2 ~~CP~C~~~L~~---~~--~~~~C~~C~~~~~-~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 2 NTCPKCQQELEW---QG--GHYHCEACQKDYK-KEAFCPDCGQPLEVLK 44 (70)
T ss_dssp -B-SSS-SBEEE---ET--TEEEETTT--EEE-EEEE-TTT-SB-EEEE
T ss_pred CcCCCCCCccEE---eC--CEEECccccccce-ecccCCCcccHHHHHH
Confidence 579999988643 22 7889999976542 3567999998876543
No 212
>PF15296 Codanin-1_C: Codanin-1 C-terminus
Probab=21.55 E-value=1e+02 Score=31.88 Aligned_cols=41 Identities=34% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCcccCCCCCCCCCcchhhhHHHHHHHHHHhhcChhhhhhhhh
Q 000801 833 MKPVLAPSHHNKIPISVRQTQLYRLTEFFLRKANLPVIRRTAE 875 (1279)
Q Consensus 833 mrp~l~~~~~nkvp~svrq~ql~r~~eh~l~k~nl~~irr~a~ 875 (1279)
++|+-+..+.........|.|+ +|.|+||+.-+ +.+||+.|
T Consensus 48 ITp~s~~~~~~~~~~~~~~lQ~-qLeeaFfh~Qp-~SlRRtVe 88 (121)
T PF15296_consen 48 ITPVSAQLPQPSRSSSPKQLQL-QLEEAFFHSQP-ASLRRTVE 88 (121)
T ss_pred ecccccccCCccccccHHHHHH-HHHHHHHhcCC-HHHHHHHH
Confidence 3365555456667778888888 99999999877 77999987
No 213
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=21.50 E-value=51 Score=39.11 Aligned_cols=42 Identities=21% Similarity=0.513 Sum_probs=28.7
Q ss_pred ccccccccccccc--eeecCCCCcccHhHHhhhccCCCCCCCCC
Q 000801 25 GRCGICMDVVIDR--GVLDCCQHWFCFACIDNWSTITNLCPLCQ 66 (1279)
Q Consensus 25 d~CpICLE~f~D~--~vL~pCgHtFC~sCIq~WlK~~nSCPLCR 66 (1279)
..|-.|.+..... -....|.+.||.+|-.--.+.-..||-|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcC
Confidence 3488886654332 35667889999999655555566788885
No 214
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=21.39 E-value=83 Score=31.57 Aligned_cols=46 Identities=26% Similarity=0.588 Sum_probs=28.3
Q ss_pred Ccccccccccccccc-ee------ecCC---CCcccHhHHhhhc---------cCCCCCCCCCcc
Q 000801 23 ECGRCGICMDVVIDR-GV------LDCC---QHWFCFACIDNWS---------TITNLCPLCQGE 68 (1279)
Q Consensus 23 EDd~CpICLE~f~D~-~v------L~pC---gHtFC~sCIq~Wl---------K~~nSCPLCRqe 68 (1279)
....|-.|...-.+. .. ...| .-.||..||..+- ...+.||.||.-
T Consensus 6 ~g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 6 NGKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 345666666532221 11 2445 7789999987542 236889999873
No 215
>PRK14873 primosome assembly protein PriA; Provisional
Probab=20.93 E-value=58 Score=41.68 Aligned_cols=26 Identities=27% Similarity=0.528 Sum_probs=15.1
Q ss_pred ceeeeeeccCCCCCchhHHHHHHHHHHH
Q 000801 517 LRVKKIMKRPAEDKDSSELVQELRKEIR 544 (1279)
Q Consensus 517 lrvkki~rr~~~~k~s~~~vq~lr~eir 544 (1279)
=|++.++|-+.. ....|.+-||....
T Consensus 619 ~~~r~~~~~~~~--~~~~l~~~l~~~~~ 644 (665)
T PRK14873 619 DRVRALVRVPRA--RGAELAAALRRAVA 644 (665)
T ss_pred ccEEEEEEecCc--cHHHHHHHHHHHHH
Confidence 357888886543 33456666665543
No 216
>COG1773 Rubredoxin [Energy production and conversion]
Probab=20.70 E-value=72 Score=29.19 Aligned_cols=14 Identities=36% Similarity=1.032 Sum_probs=10.5
Q ss_pred CCCCCcccCCcCCCC
Q 000801 165 GTCEDTWLCPRCVAE 179 (1279)
Q Consensus 165 ~VPeGdWfCP~Crs~ 179 (1279)
.+| .+|.||.|-..
T Consensus 32 dlP-d~w~CP~Cg~~ 45 (55)
T COG1773 32 DLP-DDWVCPECGVG 45 (55)
T ss_pred hCC-CccCCCCCCCC
Confidence 344 38999999865
No 217
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=20.04 E-value=41 Score=26.32 Aligned_cols=22 Identities=27% Similarity=0.727 Sum_probs=12.1
Q ss_pred cHhHHhhhccCCCCCCCCCccc
Q 000801 48 CFACIDNWSTITNLCPLCQGEF 69 (1279)
Q Consensus 48 C~sCIq~WlK~~nSCPLCRqeF 69 (1279)
|..|-..+......||.|+..|
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 4444444555556666666555
Done!