Query 000801
Match_columns 1279
No_of_seqs 220 out of 2072
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 16:21:20 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000801.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_572-576//hhsearch_pdb/000801hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kwj_A Zinc finger protein DPF 1.0 1 1 106.5 4.1 98 25-179 2-108 (114)
2 2ysm_A Myeloid/lymphoid or mix 1.0 1 1 106.3 6.0 101 19-179 2-104 (111)
3 3ask_A E3 ubiquitin-protein li 1.0 1 1 99.6 4.6 56 117-179 169-225 (226)
4 3v43_A Histone acetyltransfera 1.0 1 1 99.4 8.6 101 23-179 4-112 (112)
5 4ap4_A E3 ubiquitin ligase RNF 1.0 1 1 98.5 -1.6 115 21-181 4-124 (133)
6 2e6r_A Jumonji/ARID domain-con 1.0 1 1 95.5 3.5 56 118-179 11-66 (92)
7 3u5n_A E3 ubiquitin-protein li 1.0 1 1 91.2 3.9 50 122-180 6-55 (207)
8 4ayc_A E3 ubiquitin-protein li 1.0 1 1 90.5 2.8 50 23-73 52-101 (138)
9 2e6s_A E3 ubiquitin-protein li 1.0 1 1 88.6 5.4 55 117-178 21-76 (77)
10 3shb_A E3 ubiquitin-protein li 1.0 1 1 88.4 4.8 58 115-179 19-77 (77)
No 1
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=1.00 E-value=1 Score=106.51 Aligned_cols=98 Identities=20% Similarity=0.423 Sum_probs=67.3
Q ss_pred CCCCCCCCCCC---------CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 61001432333---------640416799936486785101478999887765420231453346899765576555688
Q 000801 25 GRCGICMDVVI---------DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGE 95 (1279)
Q Consensus 25 dtCsICLE~l~---------Dr~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~~VPVyDtiGselVd~ysVkkrd 95 (1279)
..|.||+.... +......|+..||..|+...... ...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~----------~~~------------------------ 47 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNM----------TEA------------------------ 47 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHH----------HHH------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCCHHHH----------HHC------------------------
T ss_conf 8086588975344467999998692989983232138784664----------311------------------------
Q ss_pred CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 62021002578898632365531135899767678987445588875442369888335565557889999999544876
Q 000801 96 DWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPR 175 (1279)
Q Consensus 96 DiyIEEEdqslsfPs~yIDee~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP~ 175 (1279)
++ ...+.|.++..|.+|+. ..+.+.||+||.|+++||++|++||+..+|.|+|||+.
T Consensus 48 ---~~--------------~~~W~C~~C~~C~~C~~------~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~ 104 (114)
T 2kwj_A 48 ---VK--------------TYKWQCIECKSCILCGT------SENDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHL 104 (114)
T ss_dssp ---HH--------------HTTCCCGGGCCCTTTTC------CTTTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHH
T ss_pred ---CC--------------CCCCCCCCCCCCCCCCC------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCC
T ss_conf ---68--------------77517566273375634------68887457748989410250459874678897819924
Q ss_pred CCCC
Q ss_conf 8988
Q 000801 176 CVAE 179 (1279)
Q Consensus 176 Crs~ 179 (1279)
|...
T Consensus 105 C~~~ 108 (114)
T 2kwj_A 105 CWEL 108 (114)
T ss_dssp HHHH
T ss_pred CCCH
T ss_conf 1034
No 2
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=106.32 Aligned_cols=101 Identities=22% Similarity=0.420 Sum_probs=74.2
Q ss_pred CCCCCCCCCCCCCCCCC--CCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46877561001432333--6404167999364867851014789998877654202314533468997655765556886
Q 000801 19 LLNFECGRCGICMDVVI--DRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRGED 96 (1279)
Q Consensus 19 ~~s~EddtCsICLE~l~--Dr~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~~VPVyDtiGselVd~ysVkkrdD 96 (1279)
.+..+++.|.||.+... +......|...||..|+...... +
T Consensus 2 s~~~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~--------------------------------~----- 44 (111)
T 2ysm_A 2 SSGSSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTP--------------------------------L----- 44 (111)
T ss_dssp CCCCCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCT--------------------------------T-----
T ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCHHHHCCCCCC--------------------------------C-----
T ss_conf 888997999578998887588599999977396770886554--------------------------------4-----
Q ss_pred CCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 20210025788986323655311358997676789874455888754423698883355655578899999995448768
Q 000801 97 WSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRC 176 (1279)
Q Consensus 97 iyIEEEdqslsfPs~yIDee~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP~C 176 (1279)
....+.|.++..|.+|+ ..++++.||+||.|+++||++|++|++..+|.++|||+.|
T Consensus 45 -----------------~~~~W~C~~C~~C~~C~------~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C 101 (111)
T 2ysm_A 45 -----------------KRAGWQCPECKVCQNCK------QSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNC 101 (111)
T ss_dssp -----------------TSTTCCCTTTCCCTTTC------CCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHH
T ss_pred -----------------CCCCCCCCCCCCCCCCC------CCCCCCCEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf -----------------56686587678262347------6589877658999980886986587656688988299288
Q ss_pred CCC
Q ss_conf 988
Q 000801 177 VAE 179 (1279)
Q Consensus 177 rs~ 179 (1279)
..-
T Consensus 102 ~~c 104 (111)
T 2ysm_A 102 RIC 104 (111)
T ss_dssp HCC
T ss_pred CCC
T ss_conf 272
No 3
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=99.55 Aligned_cols=56 Identities=23% Similarity=0.740 Sum_probs=46.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCC
Q ss_conf 31135899767678987445588875442369888335565557889999999-5448768988
Q 000801 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCVAE 179 (1279)
Q Consensus 117 ~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeG-dWfCP~Crs~ 179 (1279)
.+.|.++ .|.+|+ ..++.+.||+||+|+++||++||+||+..+|.| +||||.|...
T Consensus 169 ~w~C~~c-~C~vC~------~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~~ 225 (226)
T 3ask_A 169 NRLCRVC-ACHLCG------GRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 225 (226)
T ss_dssp TSCCTTT-SCSSSC------CCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC--
T ss_pred CEECCCC-CCCCCC------CCCCCCCEEECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 7766888-886889------97999876883899941007567887456989988789387494
No 4
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=1.00 E-value=1 Score=99.37 Aligned_cols=101 Identities=18% Similarity=0.365 Sum_probs=68.6
Q ss_pred CCCCCCCCCCCC--------CCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 756100143233--------364041679993648678510147899988776542023145334689976557655568
Q 000801 23 ECGRCGICMDVV--------IDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRG 94 (1279)
Q Consensus 23 EddtCsICLE~l--------~Dr~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~~VPVyDtiGselVd~ysVkkr 94 (1279)
....|.+|+..- .+......|+..||..||..+... ...
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~----------~~~----------------------- 50 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPEL----------TVR----------------------- 50 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHH----------HHH-----------------------
T ss_pred CCCCCCCCCCCHHHCCCCCCHHCEEHHHCCCCCCCCHHCCCHHH----------HHH-----------------------
T ss_conf 67613103893342768991116375344998897035388899----------987-----------------------
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86202100257889863236553113589976767898744558887544236988833556555788999999954487
Q 000801 95 EDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP 174 (1279)
Q Consensus 95 dDiyIEEEdqslsfPs~yIDee~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP 174 (1279)
+....+.|.++..|.+|+. .+.+++.||+||.|+++||++|++|++..+|.|+|||+
T Consensus 51 ------------------~~~~~W~C~~C~~C~vC~~-----~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~ 107 (112)
T 3v43_A 51 ------------------VKALRWQCIECKTCSSCRD-----QGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQ 107 (112)
T ss_dssp ------------------HHTSCCCCTTTCCBTTTCC-----CCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCT
T ss_pred ------------------HHCCCCCCCCCCCCCCCCC-----CCCCCCCEEECCCCCCEEECCCCCCCCCCCCCCCEECC
T ss_conf ------------------5424653011775446668-----68885656874899891566358999898999885797
Q ss_pred CCCCC
Q ss_conf 68988
Q 000801 175 RCVAE 179 (1279)
Q Consensus 175 ~Crs~ 179 (1279)
.|+..
T Consensus 108 ~C~~k 112 (112)
T 3v43_A 108 ICRPR 112 (112)
T ss_dssp TTSCC
T ss_pred CCCCC
T ss_conf 87896
No 5
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=1.00 E-value=1 Score=98.49 Aligned_cols=115 Identities=23% Similarity=0.430 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCCCCCCC------EEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 87756100143233364------041679993648678510147899988776542023145334689976557655568
Q 000801 21 NFECGRCGICMDVVIDR------GVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLITCVPVYDTIGSNNIDGDSLSRG 94 (1279)
Q Consensus 21 s~EddtCsICLE~l~Dr------~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~~VPVyDtiGselVd~ysVkkr 94 (1279)
..++..|+||++.+.++ .+..+|||.||..||..|......||+||..+......++
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l----------------- 66 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI----------------- 66 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEEC-----------------
T ss_pred CCCCCCCCCCCHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----------------
T ss_conf 799999950694553744356685834788756399999999848999889870764555532-----------------
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86202100257889863236553113589976767898744558887544236988833556555788999999954487
Q 000801 95 EDWSIEEKSNTLSFPSYYIDENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCP 174 (1279)
Q Consensus 95 dDiyIEEEdqslsfPs~yIDee~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP 174 (1279)
+++ .+...|.||......... .......-.|...||..|+...+.. ...||
T Consensus 67 -----------------~i~------~~~~~C~iC~~~~~~~~~--~~~~~~~~~CgH~fc~~Ci~~~~~~----~~~CP 117 (133)
T 4ap4_A 67 -----------------YIG------SGTVSCPICMDGYSEIVQ--NGRLIVSTECGHVFCSQCLRDSLKN----ANTCP 117 (133)
T ss_dssp -----------------BCS------SSSCBCTTTCCBHHHHHH--TTCCEEEETTSBEEEHHHHHHHHHH----CSBCT
T ss_pred -----------------CCC------CCCCCCCCCCCCCCCCCC--CCCCEEECCCCCHHHHHHHHHHHHC----CCCCC
T ss_conf -----------------248------888989878776235655--6766586788972149999999974----99897
Q ss_pred CCCCCCC
Q ss_conf 6898888
Q 000801 175 RCVAEVP 181 (1279)
Q Consensus 175 ~Crs~~p 181 (1279)
.|+....
T Consensus 118 ~Cr~~~~ 124 (133)
T 4ap4_A 118 TCRKKIN 124 (133)
T ss_dssp TTCCBCC
T ss_pred CCCCCCC
T ss_conf 8898378
No 6
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=95.49 Aligned_cols=56 Identities=29% Similarity=0.625 Sum_probs=47.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 11358997676789874455888754423698883355655578899999995448768988
Q 000801 118 VICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAE 179 (1279)
Q Consensus 118 viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP~Crs~ 179 (1279)
+.+.+...|.||+ ..++++.||+||.|+++||++|++||+..+|.++||||.|...
T Consensus 11 ~~~~~~~~C~vC~------~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 11 AQFIDSYICQVCS------RGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCCCSSSC------CSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred HHCCCCCCCCCCC------CCCCCCCEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1346889883689------9699877888179984334534798846588987498047283
No 7
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=1.00 E-value=1 Score=91.21 Aligned_cols=50 Identities=18% Similarity=0.443 Sum_probs=42.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89976767898744558887544236988833556555788999999954487689888
Q 000801 122 DGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDTWLCPRCVAEV 180 (1279)
Q Consensus 122 D~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGdWfCP~Crs~~ 180 (1279)
....|.+|+ ++ +.||+||+|+++||++|++|++..+|.|+|+||.|....
T Consensus 6 ~~~~C~~C~------~~---g~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQ------NG---GDLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTC------CC---EEEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCC------CC---CCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCEECCC
T ss_conf 889898889------99---936776999984387158999888899887868426866
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=90.46 Aligned_cols=50 Identities=32% Similarity=0.731 Sum_probs=43.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 756100143233364041679993648678510147899988776542023
Q 000801 23 ECGRCGICMDVVIDRGVLDCCQHWFCFACIDNWSTITNLCPLCQGEFQLIT 73 (1279)
Q Consensus 23 EddtCsICLE~l~Dr~vLdpCgHtFC~sCIeeWsKksnSCPlCRasFslI~ 73 (1279)
++..|+||++.+.+ +++.+|||+||..||..|......||+||..+....
T Consensus 52 ~~~~C~iC~~~~~~-~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 52 NELQCIICSEYFIE-AVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHSBCTTTCSBCSS-EEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCCCCCCCCCCCC-CEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 15997562723279-667889998469999999976996999998278899
No 9
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=88.61 Aligned_cols=55 Identities=25% Similarity=0.778 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 31135899767678987445588875442369888335565557889999999-544876898
Q 000801 117 AVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCED-TWLCPRCVA 178 (1279)
Q Consensus 117 ~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeG-dWfCP~Crs 178 (1279)
.+.|.++ .|.+|+. .++.+.||+||.|+++||++||+||+..+|.| +||||.|..
T Consensus 21 ~w~C~~c-~C~vC~~------~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 21 EKKCHSC-SCRVCGG------KHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCSSS-SCSSSCC------CCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CEECCCC-CCCCCCC------CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8689888-8827699------699998788489996000635688746788798738918218
No 10
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=88.37 Aligned_cols=58 Identities=22% Similarity=0.718 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC
Q ss_conf 55311358997676789874455888754423698883355655578899999995-448768988
Q 000801 115 ENAVICLDGDGCKIRSGSMVAEESSNLDTSIACDSCDLWYHAFCVGFDPEGTCEDT-WLCPRCVAE 179 (1279)
Q Consensus 115 ee~viClD~~~C~VCsGs~s~~d~~nED~LLlCDsCDrayH~yCLGPple~VPeGd-WfCP~Crs~ 179 (1279)
...+.|..+ .|.+|+ ...+.+.||+||.|+++||++||+||+..+|.++ |||+.|+..
T Consensus 19 ~~~W~C~~C-~C~vC~------~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~d 77 (77)
T 3shb_A 19 DVNRLCRVC-ACHLCG------GRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRND 77 (77)
T ss_dssp CTTSCCTTT-SBTTTC------CCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC--
T ss_pred CCCCCCCCC-CCCCCC------CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 988799988-278169------97898610680789980175147975247889994199471655
Done!