BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000802
(1278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/165 (49%), Positives = 107/165 (64%), Gaps = 4/165 (2%)
Query: 13 KYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISV 72
KYDVFLSFRG DTR +F + LY L + I F+DDKELE G SP L IE SR +V
Sbjct: 8 KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAV 67
Query: 73 IVLSKNYASSTWCLDELVKIVECKNREN-QILPIFYDVEPTVVRKQTVSFGEAFAKHVEA 131
+V+S+NYA+S+WCLDELV I++ + + + ++PIFY VEP VR QT E F KH A
Sbjct: 68 VVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKH--A 125
Query: 132 FRNNVEKVQKWRDALKVVANKSGWELKDGNESEFIEAIVNVISSK 176
R + EKV KWR AL A SG + ++S+ ++ I N IS+K
Sbjct: 126 SREDPEKVLKWRQALTNFAQLSG-DCSGDDDSKLVDKIANEISNK 169
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 140 bits (354), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 74/171 (43%), Positives = 108/171 (63%), Gaps = 7/171 (4%)
Query: 13 KYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISV 72
+Y+VFLSFRG DTR+ FT+ LY +L+ I+ FRDD EL KG I P LL+ I++S+I V
Sbjct: 35 EYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYV 94
Query: 73 IVLSKNYASSTWCLDELVKIVECKNRENQ--ILPIFYDVEPTVVRKQTVSFGEAFAKHVE 130
++S YA S WCL EL +IV + + + ILPIFY V+P+ VR QT + +AF KH
Sbjct: 95 PIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHAN 154
Query: 131 AFRNNVEKVQKWRDALKVVANKSGWELKDGNESEFIEAIVNVISSKIRTEL 181
F + + +Q W+DALK V + GW + ++ AI + +S+ I + +
Sbjct: 155 KF--DGQTIQNWKDALKKVGDLKGWHIGKNDKQ---GAIADKVSADIWSHI 200
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 67.0 bits (162), Expect = 7e-11, Method: Composition-based stats.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 707 LRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKR 766
L +FP A + L+ +D + E+P + +GL LTL L +LP +I+SL R
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLAR-NPLRALPASIASLNR 151
Query: 767 LRNLELSGCSKLKNFPQIVTSME---------DLSELYLDGTSITEVPSSIXXXXXXXXX 817
LR L + C +L P+ + S + +L L L+ T I +P+SI
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211
Query: 818 XXKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLG 857
+ L+ L +I+ L L+ L+L GC+ L N G
Sbjct: 212 KIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250
Score = 62.8 bits (151), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 34/189 (17%)
Query: 684 LTTLPGEIF-MKSLKTLVLSGCLKLRKFPRVAGSMEC---------LRELLLDETDIKEI 733
L LP I + L+ L + C +L + P S + L+ L L+ T I+ +
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL 198
Query: 734 PRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSE 793
P SI +L L L ++ LS+L I L +L L+L GC+ L+N+P I L
Sbjct: 199 PASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 794 LYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVL 853
L L K C NL L I+ L L+ L+L GC L +
Sbjct: 258 LIL-----------------------KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 854 ETLGQVESS 862
+ Q+ ++
Sbjct: 295 SLIAQLPAN 303
Score = 56.6 bits (135), Expect = 8e-08, Method: Composition-based stats.
Identities = 53/183 (28%), Positives = 78/183 (42%), Gaps = 13/183 (7%)
Query: 547 LNASAKAFSQMTNLRLLKISNVQLPEGLGYLSSKLRLLDWHGYP-LKSLPLNLQLDKAVE 605
L + + F+ + L L + LP + L+ +LR L P L LP L A
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASIASLN-RLRELSIRACPELTELPEPLASTDASG 177
Query: 606 FSMCYSCIEEL---WTGIKPL-------NMLKVMKLSHSENLIKTPNFTEVPNLEELDLE 655
++ L WTGI+ L LK +K+ +S P +P LEELDL
Sbjct: 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237
Query: 656 GCTRLRDIHPSXXXXXXXXXXXXXGCTSLTTLPGEIF-MKSLKTLVLSGCLKLRKFPRVA 714
GCT LR+ P C++L TLP +I + L+ L L GC+ L + P +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 715 GSM 717
+
Sbjct: 298 AQL 300
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 58/246 (23%), Positives = 92/246 (37%), Gaps = 51/246 (20%)
Query: 563 LKISNVQLPE--GLGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVE-FSMCYSCIEELWTG 619
L++ +V LP+ + S L+ L LP Q +E ++ + + L
Sbjct: 86 LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPAS 145
Query: 620 IKPLNMLKVMKLSHSENLIKTPNFTEVP----------------NLEELDLEGCTRLRDI 663
I LN L+ + + P TE+P NL+ L LE T +R +
Sbjct: 146 IASLNRLRELSIR------ACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSL 198
Query: 664 HPSXXXXXXXXXXXXXGCTSLTTL-PGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRE 722
P+ + L+ L P + L+ L L GC LR +P + G L+
Sbjct: 199 -PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257
Query: 723 LLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFP 782
L+L K C NL +LP+ I L +L L+L GC L P
Sbjct: 258 LIL-----------------------KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 783 QIVTSM 788
++ +
Sbjct: 295 SLIAQL 300
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 58/232 (25%), Positives = 85/232 (36%), Gaps = 36/232 (15%)
Query: 778 LKNFPQIVTSMEDLSELYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLTR-LSSSINGLK 836
L FP + L +D + E+P + +N R L +SI L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIASLN 150
Query: 837 SLKTLNLSGCSKLENVLETLGQVESS---------EQLDKSGTTIKRPSPNIFLMKNFKA 887
L+ L++ C +L + E L ++S + L T I+ +I ++N K+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKS 210
Query: 888 LSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGN 947
L + P + +G PA LP L E+LDL C P G
Sbjct: 211 LKI-------------RNSPLSALG----PAIHHLPKL-EELDLRGCTALRNYPPI-FGG 251
Query: 948 LCLLKELCLSG-NNFVTLPASINSXXXXXXXXXXDCKRLQSLP----QLPPN 994
LK L L +N +TLP I+ C L LP QLP N
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPAN 303
>pdb|1FYV|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr1
Length = 161
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 11 NEKYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRI 70
N ++ F+S+ G D+ N L L+ +G + ++ G SI ++ IE+S
Sbjct: 10 NLQFHAFISYSGHDSF-WVKNELLPNLEKEGXQICLHERNFVPGKSIVENIITCIEKSYK 68
Query: 71 SVIVLSKNYASSTWCLDEL 89
S+ VLS N+ S WC EL
Sbjct: 69 SIFVLSPNFVQSEWCHYEL 87
>pdb|2BJI|A Chain A, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
pdb|2BJI|B Chain B, High Resolution Structure Of Myo-Inositol Monophosphatase,
The Target Of Lithium Therapy
Length = 277
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 587 HGYPLKSLPLNLQLDKAVEFSMCYSCIEE-LWTGIKPLNML---KVMKLSHSENLIKTPN 642
HG+P ++ + ++K +EF + YSC+E+ ++TG K + +++SH E++ K+
Sbjct: 100 HGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTGRKGKGAFCNGQKLQVSHQEDITKSLL 159
Query: 643 FTEV 646
TE+
Sbjct: 160 VTEL 163
>pdb|2J67|A Chain A, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
pdb|2J67|B Chain B, The Tir Domain Of Human Toll-Like Receptor 10 (Tlr10)
Length = 178
Score = 35.0 bits (79), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 1 MASMSIQNVSNEKYDVFLSFRGEDTRKSFTNHLYAALKNK--GIYVFRDDKELEKGGSIS 58
M + Q N ++ F+S+ D+ N L L+ + I + + + G SIS
Sbjct: 23 MKTTQEQLKRNVRFHAFISYSEHDSL-WVKNELIPNLEKEDGSILICLYESYFDPGKSIS 81
Query: 59 PGLLKVIEESRISVIVLSKNYASSTWCLDEL 89
++ IE+S S+ VLS N+ + WC E
Sbjct: 82 ENIVSFIEKSYKSIFVLSPNFVQNEWCHYEF 112
>pdb|4AS5|A Chain A, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|B Chain B, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|C Chain C, Structure Of Mouse Inositol Monophosphatase 1
pdb|4AS5|D Chain D, Structure Of Mouse Inositol Monophosphatase 1
Length = 277
Score = 33.9 bits (76), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 587 HGYPLKSLPLNLQLDKAVEFSMCYSCIEE-LWTGIKPLNML---KVMKLSHSENLIKTPN 642
H +P ++ + ++K +EF + YSC+E+ ++TG K + +++S E++ K+
Sbjct: 100 HRFPFVAVSIGFLVNKEMEFGIVYSCVEDKMYTGRKGKGAFCNGQKLQVSQQEDITKSLL 159
Query: 643 FTEV 646
TE+
Sbjct: 160 VTEL 163
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 31/199 (15%)
Query: 683 SLTTLPGEIFMKSLKTLVLSGCL--KLRKFPRVAGSMECLRELLLDETDIK-EIPRSIGH 739
SLT L + L + SG + L + P+ L+EL L +IP ++ +
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-----NTLQELYLQNNGFTGKIPPTLSN 413
Query: 740 LSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGT 799
S LV L L ++P ++ SL +LR+L+L PQ + ++ L L LD
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 800 SIT-EVPSSIXXXXXXXXXXXKGCKNLTRLSSS-----------INGLKSLKTLNLSGCS 847
+T E+PS + C NL +S S I L++L L LS S
Sbjct: 474 DLTGEIPSGL-----------SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 848 KLENVLETLGQVESSEQLD 866
N+ LG S LD
Sbjct: 523 FSGNIPAELGDCRSLIWLD 541
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 680 GCTSLTTLPGEIF--MKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPR-S 736
G LT LP +F + LK L + C KL + PR + L L LD+ +K IP +
Sbjct: 96 GTNQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGA 154
Query: 737 IGHLSGLVQLTLKG 750
LS L L G
Sbjct: 155 FDRLSSLTHAYLFG 168
>pdb|2HHM|A Chain A, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|2HHM|B Chain B, Structure Of Inositol Monophosphatase, The Putative Target
Of Lithium Therapy
pdb|1AWB|A Chain A, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
pdb|1AWB|B Chain B, Human Myo-Inositol Monophosphatase In Complex With D-
Inositol-1-Phosphate And Calcium
Length = 276
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 587 HGYPLKSLPLNLQLDKAVEFSMCYSCIE-ELWTGIKPLNML---KVMKLSHSENLIKTPN 642
H +P ++ + ++K +EF + YSC+E +++T K + +++S E++ K+
Sbjct: 99 HRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLL 158
Query: 643 FTEV 646
TE+
Sbjct: 159 VTEL 162
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 82/199 (41%), Gaps = 31/199 (15%)
Query: 683 SLTTLPGEIFMKSLKTLVLSGCL--KLRKFPRVAGSMECLRELLLDETDIK-EIPRSIGH 739
SLT L + L + SG + L + P+ L+EL L +IP ++ +
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPK-----NTLQELYLQNNGFTGKIPPTLSN 416
Query: 740 LSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGT 799
S LV L L ++P ++ SL +LR+L+L PQ + ++ L L LD
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 800 SIT-EVPSSIXXXXXXXXXXXKGCKNLTRLSSS-----------INGLKSLKTLNLSGCS 847
+T E+PS + C NL +S S I L++L L LS S
Sbjct: 477 DLTGEIPSGL-----------SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 848 KLENVLETLGQVESSEQLD 866
N+ LG S LD
Sbjct: 526 FSGNIPAELGDCRSLIWLD 544
>pdb|1IMA|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMA|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|A Chain A, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMB|B Chain B, Structural Analysis Of Inositol Monophosphatase Complexes
With Substrates
pdb|1IMC|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMC|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMD|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IMD|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-metal Ion Catalysis
pdb|1IME|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IME|B Chain B, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|1IMF|A Chain A, Structural Studies Of Metal Binding By Inositol
Monophosphatase: Evidence For Two-Metal Ion Catalysis
pdb|4AS4|A Chain A, Structure Of Human Inositol Monophosphatase 1
pdb|4AS4|B Chain B, Structure Of Human Inositol Monophosphatase 1
Length = 277
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 587 HGYPLKSLPLNLQLDKAVEFSMCYSCIE-ELWTGIKPLNML---KVMKLSHSENLIKTPN 642
H +P ++ + ++K +EF + YSC+E +++T K + +++S E++ K+
Sbjct: 100 HRFPFVAVSIGFAVNKKIEFGVVYSCVEGKMYTARKGKGAFCNGQKLQVSQQEDITKSLL 159
Query: 643 FTEV 646
TE+
Sbjct: 160 VTEL 163
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 718 ECLRELLLDETDIKEIPRSIGHLSGLVQLTLK--GCQNLSSLPV---TISSLKRLRNLEL 772
+ L+EL + E +I ++ +S+ +GL Q+ + G L S + +K+L + +
Sbjct: 121 KTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 773 SGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLTRLSSSI 832
+ + + PQ + L+EL+LDG IT+V ++ KG NL +L S
Sbjct: 179 AD-TNITTIPQGLPP--SLTELHLDGNKITKVDAA----------SLKGLNNLAKLGLSF 225
Query: 833 NGLKSLKTLNLSGCSKL 849
N + ++ +L+ L
Sbjct: 226 NSISAVDNGSLANTPHL 242
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 14/94 (14%)
Query: 747 TLKGCQN--LSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEV 804
TL CQN L+S+P I + K+ L + +KL+ P + + +L +LY + +T +
Sbjct: 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLE--PGVFDHLVNLQQLYFNSNKLTAI 72
Query: 805 PSSIXXXXXXXXXXXKGCKNLTRLSSSINGLKSL 838
P+ + LT+L + N LKS+
Sbjct: 73 PTGVFDKLT----------QLTQLDLNDNHLKSI 96
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 718 ECLRELLLDETDIKEIPRSIGHLSGLVQLTLK--GCQNLSSLPV---TISSLKRLRNLEL 772
+ L+EL + E +I ++ +S+ +GL Q+ + G L S + +K+L + +
Sbjct: 121 KTLQELRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178
Query: 773 SGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLTRLSSSI 832
+ + + PQ + L+EL+LDG IT+V ++ KG NL +L S
Sbjct: 179 AD-TNITTIPQGLPP--SLTELHLDGNKITKVDAA----------SLKGLNNLAKLGLSF 225
Query: 833 NGLKSLKTLNLSGCSKL 849
N + ++ +L+ L
Sbjct: 226 NSISAVDNGSLANTPHL 242
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 182 KIPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236
K E +G E +KL+V+++ R + + ++G GLGKTTLA V I+HE
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 27/141 (19%)
Query: 718 ECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSK 777
E + E+ L++ IK IP P S K+LR ++LS
Sbjct: 32 ETITEIRLEQNTIKVIP-----------------------PGAFSPYKKLRRIDLSNNQI 68
Query: 778 LKNFPQIVTSMEDLSELYLDGTSITEVPSSIXXXXXXXXXXXKGCKNLTRLSSSINGLKS 837
+ P + L+ L L G ITE+P S+ + L ++ +
Sbjct: 69 SELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCL--RVDAFQD 126
Query: 838 LKTLNLSGCSKLENVLETLGQ 858
L LNL S +N L+T+ +
Sbjct: 127 LHNLNL--LSLYDNKLQTIAK 145
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.0 bits (71), Expect = 2.4, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 182 KIPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236
K E +G E +KL+V+++ R + + ++G GLGKTTLA V I+HE
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.0 bits (71), Expect = 2.5, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 7/58 (12%)
Query: 182 KIPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236
K E +G E +KL+V+++ R + + ++G GLGKTTLA V I+HE
Sbjct: 9 KTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHV----IAHEL 62
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 616 LWTGIKPLNMLKVMKLSHSENLIKTPN-FTEVPNLEELDLEGCTRLRDIHPSXXXXXXXX 674
++ G+ L +LK+ S EN + P+ FTE+ NL LDL C +L + P+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFL--PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSL 496
Query: 675 XXXXXGCTSLTTLPGEIF 692
L ++P IF
Sbjct: 497 QVLNMASNQLKSVPDGIF 514
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 27/162 (16%)
Query: 754 LSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDG---TSITEVPSSIXX 810
L+SLP S LK L + ++L + P + + +L EL + G TS+ +PS +
Sbjct: 213 LTSLPALPSGLKEL----IVSGNRLTSLPVLPS---ELKELMVSGNRLTSLPMLPSGLLS 265
Query: 811 XXXXXXXXXKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGT 870
LTRL S+ L S T+NL G E L+ L ++ S+ SG
Sbjct: 266 LSVYR-------NQLTRLPESLIHLSSETTVNLEGNPLSERTLQALREITSAP--GYSGP 316
Query: 871 TIKRPSPNIFLMKNFKALSFCGCN-------GSPSSTS-WHL 904
I+ + +AL + G P+ WH+
Sbjct: 317 IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHM 358
>pdb|2QE7|D Chain D, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|E Chain E, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
pdb|2QE7|F Chain F, Crystal Structure Of The F1-Atpase From The
Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1
Length = 462
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 211 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGS 254
IG++G G+GKT L + + + ++ E G S A V E+ +EG+
Sbjct: 147 IGLFGGAGVGKTVLIQELINNVAQEHGGLSVFAGVGERT-REGN 189
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 758 PVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIXXXXXXXXX 817
P S K+LR ++LS + P + L+ L L G ITE+P S+
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 818 XXKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQ 858
+ L ++ + L LNL S +N L+T+ +
Sbjct: 109 LLLNANKINXL--RVDAFQDLHNLNL--LSLYDNKLQTIAK 145
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.0 bits (66), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 712 RVAGSMECLRELLLDETDIKEIP-RSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNL 770
R + L +L L++ ++ IP ++ HL GL+ L L+ + + L RL+ L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 771 ELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVP 805
E+S L +L+ L + ++T VP
Sbjct: 206 EISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP 240
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,797,515
Number of Sequences: 62578
Number of extensions: 1399176
Number of successful extensions: 3359
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 3309
Number of HSP's gapped (non-prelim): 63
length of query: 1278
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1168
effective length of database: 8,089,757
effective search space: 9448836176
effective search space used: 9448836176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)