Query 000802
Match_columns 1278
No_of_seqs 905 out of 6290
Neff 9.2
Searched_HMMs 46136
Date Mon Apr 1 23:55:02 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000802.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000802hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 2E-135 4E-140 1340.7 89.9 1060 1-1210 1-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2.9E-56 6.2E-61 555.2 32.5 306 188-500 161-498 (889)
3 PLN03194 putative disease resi 100.0 3.9E-40 8.6E-45 323.0 12.7 157 6-178 19-178 (187)
4 PLN00113 leucine-rich repeat r 100.0 5.5E-37 1.2E-41 407.6 27.8 460 551-1012 86-590 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 1.9E-35 4.1E-40 336.1 16.3 268 190-462 1-283 (287)
6 PLN00113 leucine-rich repeat r 100.0 1.2E-34 2.7E-39 385.1 25.4 441 549-991 109-590 (968)
7 KOG0472 Leucine-rich repeat pr 99.9 3.5E-30 7.6E-35 274.2 -11.3 399 559-985 46-541 (565)
8 KOG4194 Membrane glycoprotein 99.9 4.6E-27 9.9E-32 261.1 5.6 417 561-1076 55-487 (873)
9 KOG0444 Cytoskeletal regulator 99.9 4.8E-28 1E-32 269.4 -4.2 363 560-990 9-380 (1255)
10 KOG0444 Cytoskeletal regulator 99.9 1.4E-26 3.1E-31 257.8 -3.0 337 551-893 25-372 (1255)
11 KOG0472 Leucine-rich repeat pr 99.9 1.9E-27 4E-32 253.5 -10.1 398 580-990 46-522 (565)
12 PLN03210 Resistant to P. syrin 99.9 4.1E-23 8.9E-28 274.1 24.5 310 626-1010 591-910 (1153)
13 KOG4194 Membrane glycoprotein 99.9 3.2E-24 6.9E-29 238.6 3.7 366 560-969 80-465 (873)
14 KOG0618 Serine/threonine phosp 99.9 2E-25 4.4E-30 261.8 -6.9 403 551-1004 38-487 (1081)
15 KOG0618 Serine/threonine phosp 99.9 1E-24 2.3E-29 255.9 -5.1 428 560-1009 23-467 (1081)
16 PF01582 TIR: TIR domain; Int 99.8 2.5E-19 5.5E-24 178.7 2.6 132 16-147 1-140 (141)
17 smart00255 TIR Toll - interleu 99.7 9.5E-18 2E-22 168.2 11.3 135 13-150 1-138 (140)
18 PRK15387 E3 ubiquitin-protein 99.7 1E-15 2.2E-20 188.1 16.7 258 650-988 204-461 (788)
19 PRK15387 E3 ubiquitin-protein 99.6 4.6E-15 1E-19 182.4 15.4 258 581-875 203-460 (788)
20 PRK15370 E3 ubiquitin-protein 99.6 9.6E-15 2.1E-19 181.2 11.5 94 648-751 179-272 (754)
21 PRK15370 E3 ubiquitin-protein 99.5 4.1E-14 8.9E-19 175.6 12.6 200 602-823 200-399 (754)
22 KOG4237 Extracellular matrix p 99.5 1.1E-15 2.3E-20 164.5 -2.3 90 760-849 269-359 (498)
23 KOG4237 Extracellular matrix p 99.5 1.2E-15 2.6E-20 164.1 -4.0 285 585-872 52-358 (498)
24 PF13676 TIR_2: TIR domain; PD 99.4 6.3E-14 1.4E-18 131.6 3.8 86 16-108 1-87 (102)
25 cd00116 LRR_RI Leucine-rich re 99.4 8.1E-14 1.8E-18 161.4 -0.1 57 927-983 253-318 (319)
26 KOG0617 Ras suppressor protein 99.4 3E-14 6.5E-19 135.9 -3.5 160 684-846 23-183 (264)
27 PRK04841 transcriptional regul 99.3 7.6E-11 1.6E-15 156.8 25.8 293 183-500 12-335 (903)
28 KOG0617 Ras suppressor protein 99.3 2.7E-13 5.8E-18 129.4 -0.0 157 594-776 26-184 (264)
29 cd00116 LRR_RI Leucine-rich re 99.2 1E-12 2.2E-17 152.2 -0.2 153 741-893 137-317 (319)
30 PRK00411 cdc6 cell division co 99.2 3.7E-09 8.1E-14 125.9 24.9 285 182-478 27-358 (394)
31 TIGR00635 ruvB Holliday juncti 99.1 1.8E-09 4E-14 123.6 18.6 271 185-481 4-292 (305)
32 TIGR02928 orc1/cdc6 family rep 99.1 1.8E-08 3.9E-13 118.8 26.7 286 182-478 12-350 (365)
33 KOG4658 Apoptotic ATPase [Sign 99.1 3.6E-11 7.8E-16 151.9 2.5 212 461-703 429-651 (889)
34 COG3899 Predicted ATPase [Gene 99.1 3.3E-09 7.2E-14 135.0 20.0 309 186-499 1-388 (849)
35 PF01637 Arch_ATPase: Archaeal 99.1 1.7E-09 3.7E-14 119.0 14.8 197 187-389 1-233 (234)
36 PRK00080 ruvB Holliday junctio 99.1 2.3E-09 5.1E-14 123.4 16.0 275 183-481 23-313 (328)
37 PF05729 NACHT: NACHT domain 98.9 9.1E-09 2E-13 106.4 11.9 143 209-359 1-163 (166)
38 TIGR03015 pepcterm_ATPase puta 98.9 1.2E-07 2.6E-12 106.7 21.1 178 208-394 43-242 (269)
39 COG2909 MalT ATP-dependent tra 98.9 2.5E-07 5.5E-12 111.0 22.9 294 182-500 16-341 (894)
40 KOG3207 Beta-tubulin folding c 98.7 4.1E-09 9E-14 116.2 3.3 183 785-983 142-337 (505)
41 KOG1259 Nischarin, modulator o 98.7 8E-09 1.7E-13 107.8 2.7 59 786-846 281-339 (490)
42 PTZ00112 origin recognition co 98.7 1E-06 2.2E-11 106.6 20.0 245 182-440 752-1030(1164)
43 KOG3207 Beta-tubulin folding c 98.6 5.9E-09 1.3E-13 115.0 0.1 213 715-962 118-339 (505)
44 KOG0532 Leucine-rich repeat (L 98.6 3.3E-09 7.1E-14 120.3 -2.0 141 661-806 111-251 (722)
45 PRK06893 DNA replication initi 98.6 2.9E-07 6.2E-12 100.0 13.0 150 208-390 39-203 (229)
46 KOG3678 SARM protein (with ste 98.6 8.1E-08 1.7E-12 105.4 8.4 92 10-106 609-708 (832)
47 KOG0532 Leucine-rich repeat (L 98.6 4.9E-09 1.1E-13 118.9 -2.5 189 581-775 77-270 (722)
48 COG3903 Predicted ATPase [Gene 98.6 9E-08 1.9E-12 106.5 6.6 282 206-499 12-316 (414)
49 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.4E-12 113.4 6.9 192 629-826 98-291 (394)
50 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.5E-12 113.3 6.9 194 562-758 97-294 (394)
51 TIGR03420 DnaA_homol_Hda DnaA 98.5 2.4E-06 5.2E-11 93.3 15.5 168 190-392 22-203 (226)
52 PRK15386 type III secretion pr 98.5 5.1E-07 1.1E-11 102.7 9.7 61 788-853 51-111 (426)
53 PRK13342 recombination factor 98.4 5.2E-06 1.1E-10 98.7 18.4 175 184-391 11-197 (413)
54 COG2256 MGS1 ATPase related to 98.4 1E-06 2.2E-11 97.4 11.1 168 185-385 24-207 (436)
55 KOG1909 Ran GTPase-activating 98.4 1.7E-08 3.8E-13 108.6 -2.7 65 919-984 237-310 (382)
56 KOG1909 Ran GTPase-activating 98.3 1.8E-07 4E-12 100.8 2.4 131 693-823 91-252 (382)
57 KOG1259 Nischarin, modulator o 98.3 2E-07 4.3E-12 97.6 2.5 147 554-703 210-383 (490)
58 PRK12402 replication factor C 98.3 8.3E-06 1.8E-10 95.1 16.0 199 184-388 14-224 (337)
59 PF13191 AAA_16: AAA ATPase do 98.3 2.6E-06 5.6E-11 89.8 10.1 50 186-235 1-51 (185)
60 PF13173 AAA_14: AAA domain 98.3 1.5E-06 3.2E-11 85.1 7.2 120 208-351 2-127 (128)
61 PRK08727 hypothetical protein; 98.3 1.9E-05 4E-10 86.0 16.3 168 185-387 19-201 (233)
62 PRK14963 DNA polymerase III su 98.3 7E-06 1.5E-10 98.6 13.9 194 183-387 12-214 (504)
63 PF14580 LRR_9: Leucine-rich r 98.3 3E-07 6.4E-12 93.7 1.6 103 556-658 17-124 (175)
64 TIGR01242 26Sp45 26S proteasom 98.2 7.6E-06 1.6E-10 95.8 13.0 172 184-384 121-328 (364)
65 PRK14961 DNA polymerase III su 98.2 5.1E-05 1.1E-09 88.5 19.8 191 183-387 14-217 (363)
66 PF00308 Bac_DnaA: Bacterial d 98.2 5.7E-05 1.2E-09 81.2 18.4 159 207-388 33-206 (219)
67 PRK07003 DNA polymerase III su 98.2 8E-05 1.7E-09 90.5 20.2 194 183-389 14-220 (830)
68 PRK04195 replication factor C 98.2 3.3E-05 7.2E-10 93.8 17.5 177 184-388 13-200 (482)
69 PRK00440 rfc replication facto 98.2 6.1E-05 1.3E-09 87.1 18.9 179 185-386 17-199 (319)
70 PRK14960 DNA polymerase III su 98.2 8.7E-05 1.9E-09 89.3 19.9 194 183-387 13-216 (702)
71 PRK08903 DnaA regulatory inact 98.2 2.5E-05 5.4E-10 85.2 14.4 172 185-394 18-203 (227)
72 PF14580 LRR_9: Leucine-rich r 98.2 1.3E-06 2.7E-11 89.1 3.7 57 788-844 87-148 (175)
73 PLN03025 replication factor C 98.1 8.1E-05 1.8E-09 85.5 18.7 179 184-385 12-195 (319)
74 COG1474 CDC6 Cdc6-related prot 98.1 7.8E-05 1.7E-09 85.9 18.3 246 182-442 14-291 (366)
75 KOG4341 F-box protein containi 98.1 9.6E-08 2.1E-12 105.1 -5.2 251 621-871 161-437 (483)
76 KOG2120 SCF ubiquitin ligase, 98.1 1.2E-07 2.5E-12 99.5 -4.4 176 790-1006 186-376 (419)
77 PRK09087 hypothetical protein; 98.1 2.4E-05 5.1E-10 84.4 13.0 138 208-389 44-194 (226)
78 cd00009 AAA The AAA+ (ATPases 98.1 2.1E-05 4.5E-10 79.2 12.0 123 188-330 1-131 (151)
79 PLN03150 hypothetical protein; 98.1 4.7E-06 1E-10 104.1 8.5 113 838-991 420-534 (623)
80 PRK05642 DNA replication initi 98.1 7.5E-05 1.6E-09 81.3 16.8 150 208-390 45-208 (234)
81 PRK07471 DNA polymerase III su 98.1 0.00019 4E-09 83.0 20.8 200 183-391 17-239 (365)
82 KOG4341 F-box protein containi 98.1 1.4E-07 3E-12 103.9 -4.6 274 625-898 139-441 (483)
83 PRK05564 DNA polymerase III su 98.1 7.8E-05 1.7E-09 85.4 17.5 177 185-390 4-190 (313)
84 PRK13341 recombination factor 98.1 0.00016 3.4E-09 90.6 20.8 169 184-385 27-212 (725)
85 PF13401 AAA_22: AAA domain; P 98.1 1.5E-05 3.3E-10 78.5 9.7 115 207-328 3-125 (131)
86 PRK14956 DNA polymerase III su 98.1 3.2E-05 6.9E-10 90.5 13.6 191 183-385 16-217 (484)
87 PRK08084 DNA replication initi 98.1 0.0001 2.2E-09 80.4 16.6 169 187-390 25-209 (235)
88 PRK14949 DNA polymerase III su 98.1 7.3E-05 1.6E-09 92.7 16.7 195 183-389 14-219 (944)
89 PRK12323 DNA polymerase III su 98.0 0.0002 4.4E-09 86.0 19.3 195 183-389 14-224 (700)
90 TIGR02397 dnaX_nterm DNA polym 98.0 9.6E-05 2.1E-09 86.8 16.6 197 183-391 12-219 (355)
91 PTZ00202 tuzin; Provisional 98.0 3.6E-05 7.7E-10 86.9 11.9 162 182-358 259-433 (550)
92 PRK14957 DNA polymerase III su 98.0 0.00013 2.8E-09 88.0 16.4 197 183-390 14-221 (546)
93 PRK08691 DNA polymerase III su 98.0 8.1E-05 1.8E-09 90.5 14.5 194 183-387 14-217 (709)
94 KOG2028 ATPase related to the 98.0 3.9E-05 8.4E-10 83.1 10.4 146 185-358 138-293 (554)
95 PRK15386 type III secretion pr 98.0 2.2E-05 4.8E-10 89.5 9.1 65 643-712 48-112 (426)
96 PRK03992 proteasome-activating 98.0 7.8E-05 1.7E-09 87.6 13.8 172 184-384 130-337 (389)
97 PRK14962 DNA polymerase III su 97.9 0.00045 9.7E-09 82.6 20.1 197 183-392 12-221 (472)
98 PRK14087 dnaA chromosomal repl 97.9 0.00015 3.2E-09 86.6 16.0 166 208-393 141-322 (450)
99 PF05496 RuvB_N: Holliday junc 97.9 8.2E-05 1.8E-09 77.5 11.9 176 183-392 22-223 (233)
100 COG2255 RuvB Holliday junction 97.9 0.00021 4.5E-09 75.7 14.9 262 183-483 24-316 (332)
101 KOG2120 SCF ubiquitin ligase, 97.9 4.9E-07 1.1E-11 95.0 -4.4 175 720-894 187-374 (419)
102 TIGR00362 DnaA chromosomal rep 97.9 0.00047 1E-08 82.2 20.2 181 184-388 110-308 (405)
103 PLN03150 hypothetical protein; 97.9 1.5E-05 3.3E-10 99.7 7.2 49 808-856 462-510 (623)
104 PRK07994 DNA polymerase III su 97.9 0.00013 2.9E-09 89.1 14.8 196 183-389 14-219 (647)
105 PRK14088 dnaA chromosomal repl 97.9 0.00029 6.2E-09 84.1 17.3 157 208-387 130-302 (440)
106 PRK07940 DNA polymerase III su 97.9 0.00024 5.3E-09 82.7 16.1 188 185-390 5-213 (394)
107 PRK14955 DNA polymerase III su 97.9 0.00025 5.3E-09 83.9 16.0 196 183-386 14-224 (397)
108 PRK14964 DNA polymerase III su 97.9 0.00069 1.5E-08 80.6 19.5 191 183-386 11-213 (491)
109 PRK14954 DNA polymerase III su 97.9 0.00032 6.8E-09 86.1 17.1 195 183-385 14-223 (620)
110 PRK09112 DNA polymerase III su 97.8 0.00018 3.8E-09 82.7 13.7 196 182-391 20-241 (351)
111 PRK06645 DNA polymerase III su 97.8 0.0001 2.2E-09 88.2 12.2 192 183-385 19-224 (507)
112 PF08937 DUF1863: MTH538 TIR-l 97.8 3E-05 6.4E-10 76.0 6.2 89 14-106 1-106 (130)
113 PRK14951 DNA polymerase III su 97.8 0.00058 1.3E-08 83.5 18.4 186 183-387 14-222 (618)
114 PF13855 LRR_8: Leucine rich r 97.8 1.6E-05 3.5E-10 66.2 3.3 55 927-983 4-60 (61)
115 PF14516 AAA_35: AAA-like doma 97.8 0.0048 1E-07 71.0 24.7 204 182-396 8-245 (331)
116 PRK00149 dnaA chromosomal repl 97.8 0.00037 8E-09 84.1 16.2 178 186-387 124-319 (450)
117 KOG2227 Pre-initiation complex 97.8 0.0011 2.4E-08 75.2 18.2 204 182-391 147-373 (529)
118 PRK06620 hypothetical protein; 97.8 0.00028 6E-09 75.5 13.3 132 209-386 45-185 (214)
119 PRK14958 DNA polymerase III su 97.8 0.00091 2E-08 80.9 19.1 193 183-387 14-217 (509)
120 PRK14970 DNA polymerase III su 97.8 0.00055 1.2E-08 80.6 16.9 177 184-385 16-204 (367)
121 PRK14952 DNA polymerase III su 97.8 0.00082 1.8E-08 81.9 18.5 201 183-392 11-222 (584)
122 TIGR02881 spore_V_K stage V sp 97.8 0.00019 4.2E-09 79.8 12.3 152 186-360 7-192 (261)
123 PRK05896 DNA polymerase III su 97.8 0.00027 5.9E-09 85.2 14.1 195 183-390 14-221 (605)
124 PTZ00361 26 proteosome regulat 97.7 0.00018 3.8E-09 84.6 12.1 153 185-361 183-369 (438)
125 PRK14086 dnaA chromosomal repl 97.7 0.00077 1.7E-08 81.4 17.5 153 208-384 314-482 (617)
126 PRK12422 chromosomal replicati 97.7 0.0011 2.3E-08 79.0 18.4 152 208-383 141-306 (445)
127 PRK14959 DNA polymerase III su 97.7 0.0012 2.6E-08 80.2 18.8 198 183-394 14-225 (624)
128 PRK14969 DNA polymerase III su 97.7 0.00052 1.1E-08 83.6 15.5 194 183-390 14-221 (527)
129 TIGR03689 pup_AAA proteasome A 97.7 0.00086 1.9E-08 80.0 16.9 159 185-359 182-378 (512)
130 PRK09376 rho transcription ter 97.7 6.6E-05 1.4E-09 84.8 7.0 94 208-304 169-269 (416)
131 TIGR00678 holB DNA polymerase 97.7 0.00044 9.6E-09 72.9 12.9 89 290-386 95-187 (188)
132 TIGR03345 VI_ClpV1 type VI sec 97.7 0.00036 7.9E-09 89.6 14.5 178 183-383 185-389 (852)
133 PTZ00454 26S protease regulato 97.7 0.00087 1.9E-08 78.4 16.2 173 184-384 144-351 (398)
134 PRK09111 DNA polymerase III su 97.7 0.0011 2.4E-08 81.3 17.6 196 183-389 22-232 (598)
135 TIGR02639 ClpA ATP-dependent C 97.6 0.00036 7.8E-09 89.1 13.3 154 183-359 180-358 (731)
136 TIGR02903 spore_lon_C ATP-depe 97.6 0.00056 1.2E-08 84.9 14.4 202 183-392 152-397 (615)
137 PRK07952 DNA replication prote 97.6 0.0016 3.6E-08 70.6 15.8 50 193-242 84-133 (244)
138 cd01128 rho_factor Transcripti 97.6 6.8E-05 1.5E-09 81.6 5.2 93 208-303 16-115 (249)
139 PRK07133 DNA polymerase III su 97.6 0.0011 2.4E-08 81.8 16.0 196 183-390 16-220 (725)
140 PRK14950 DNA polymerase III su 97.6 0.0014 2.9E-08 81.5 17.2 195 183-390 14-221 (585)
141 KOG0989 Replication factor C, 97.6 0.0044 9.4E-08 66.8 18.2 189 182-390 33-231 (346)
142 TIGR02880 cbbX_cfxQ probable R 97.6 0.0015 3.3E-08 73.2 15.6 128 210-359 60-208 (284)
143 PRK07764 DNA polymerase III su 97.5 0.0031 6.6E-08 80.2 19.7 194 183-386 13-217 (824)
144 KOG0531 Protein phosphatase 1, 97.5 2.6E-05 5.7E-10 93.2 1.3 192 601-823 72-266 (414)
145 PHA02544 44 clamp loader, smal 97.5 0.0021 4.6E-08 74.0 17.1 148 183-357 19-171 (316)
146 KOG1859 Leucine-rich repeat pr 97.5 8.6E-07 1.9E-11 103.5 -10.7 13 693-705 108-120 (1096)
147 PRK06305 DNA polymerase III su 97.5 0.0017 3.6E-08 77.7 16.5 197 183-390 15-223 (451)
148 PF05673 DUF815: Protein of un 97.5 0.0035 7.5E-08 66.5 16.6 54 182-235 24-79 (249)
149 PRK14953 DNA polymerase III su 97.5 0.0021 4.5E-08 77.4 17.1 192 183-390 14-220 (486)
150 KOG2982 Uncharacterized conser 97.5 6.5E-05 1.4E-09 79.4 3.6 206 787-1009 69-284 (418)
151 PF12799 LRR_4: Leucine Rich r 97.5 6.5E-05 1.4E-09 57.4 2.6 41 949-990 1-41 (44)
152 PRK12377 putative replication 97.5 0.002 4.4E-08 70.0 15.0 36 208-243 101-136 (248)
153 PRK10865 protein disaggregatio 97.5 0.00088 1.9E-08 86.5 14.0 154 183-359 176-354 (857)
154 KOG0531 Protein phosphatase 1, 97.5 3.2E-05 6.9E-10 92.5 0.9 169 579-753 95-267 (414)
155 PRK08451 DNA polymerase III su 97.5 0.00067 1.4E-08 81.4 11.7 194 183-389 12-217 (535)
156 CHL00176 ftsH cell division pr 97.5 0.002 4.4E-08 79.7 16.3 173 184-383 182-387 (638)
157 KOG2543 Origin recognition com 97.5 0.0044 9.5E-08 68.7 16.8 168 183-358 4-192 (438)
158 TIGR03346 chaperone_ClpB ATP-d 97.5 0.00094 2E-08 86.7 14.0 153 183-358 171-348 (852)
159 CHL00181 cbbX CbbX; Provisiona 97.5 0.0033 7.2E-08 70.5 16.5 131 209-361 60-211 (287)
160 COG1222 RPT1 ATP-dependent 26S 97.4 0.0011 2.3E-08 72.9 11.9 169 185-385 151-358 (406)
161 PRK14971 DNA polymerase III su 97.4 0.0078 1.7E-07 74.6 20.9 188 183-385 15-217 (614)
162 CHL00095 clpC Clp protease ATP 97.4 0.00081 1.8E-08 87.0 13.0 151 184-357 178-352 (821)
163 PF13855 LRR_8: Leucine rich r 97.4 0.00011 2.4E-09 61.2 3.1 57 790-846 2-59 (61)
164 TIGR01241 FtsH_fam ATP-depende 97.4 0.003 6.5E-08 77.2 16.9 174 184-384 54-260 (495)
165 PRK14948 DNA polymerase III su 97.4 0.0017 3.7E-08 80.3 14.7 193 183-390 14-222 (620)
166 PRK06647 DNA polymerase III su 97.4 0.0071 1.5E-07 74.0 19.8 194 183-388 14-218 (563)
167 KOG2982 Uncharacterized conser 97.4 3E-05 6.5E-10 81.9 -0.7 43 919-962 220-262 (418)
168 PRK08116 hypothetical protein; 97.4 0.00092 2E-08 74.2 10.7 102 209-329 115-221 (268)
169 TIGR00767 rho transcription te 97.3 0.00026 5.6E-09 80.6 6.0 95 207-304 167-268 (415)
170 KOG1859 Leucine-rich repeat pr 97.3 1E-05 2.2E-10 94.8 -5.4 177 553-732 104-293 (1096)
171 PF08357 SEFIR: SEFIR domain; 97.3 0.00031 6.8E-09 70.9 5.0 65 15-79 2-70 (150)
172 PRK11034 clpA ATP-dependent Cl 97.3 0.0014 3E-08 82.7 11.6 153 184-359 185-362 (758)
173 PRK07399 DNA polymerase III su 97.2 0.011 2.3E-07 67.2 17.1 193 185-390 4-221 (314)
174 PRK05563 DNA polymerase III su 97.2 0.0096 2.1E-07 73.3 17.7 192 183-386 14-216 (559)
175 COG0593 DnaA ATPase involved i 97.2 0.0094 2E-07 68.7 16.2 135 207-362 112-260 (408)
176 PF00004 AAA: ATPase family as 97.2 0.0023 5E-08 62.9 9.9 23 211-233 1-23 (132)
177 COG1373 Predicted ATPase (AAA+ 97.1 0.0053 1.1E-07 72.3 14.3 148 210-390 39-192 (398)
178 PRK05707 DNA polymerase III su 97.1 0.0065 1.4E-07 69.3 14.5 94 291-390 106-203 (328)
179 PRK10536 hypothetical protein; 97.1 0.0034 7.5E-08 67.4 11.1 135 185-331 55-215 (262)
180 PRK14965 DNA polymerase III su 97.1 0.0063 1.4E-07 75.2 14.9 196 183-390 14-221 (576)
181 COG0466 Lon ATP-dependent Lon 97.1 0.012 2.6E-07 70.7 16.1 161 183-359 321-508 (782)
182 PF12799 LRR_4: Leucine Rich r 97.1 0.00056 1.2E-08 52.2 3.3 37 927-965 4-40 (44)
183 PRK08181 transposase; Validate 97.0 0.0025 5.5E-08 70.2 9.6 35 209-243 107-141 (269)
184 smart00382 AAA ATPases associa 97.0 0.0026 5.6E-08 63.2 8.8 28 209-236 3-30 (148)
185 TIGR01243 CDC48 AAA family ATP 97.0 0.013 2.8E-07 75.4 17.0 175 184-385 177-382 (733)
186 TIGR00602 rad24 checkpoint pro 97.0 0.0039 8.3E-08 76.6 11.4 51 183-233 82-135 (637)
187 PRK06526 transposase; Provisio 97.0 0.0013 2.9E-08 72.0 6.7 27 209-235 99-125 (254)
188 PF10443 RNA12: RNA12 protein; 97.0 0.071 1.5E-06 61.4 20.5 177 292-479 149-370 (431)
189 PRK09183 transposase/IS protei 97.0 0.0021 4.5E-08 71.1 8.1 26 209-234 103-128 (259)
190 KOG3665 ZYG-1-like serine/thre 97.0 0.00016 3.5E-09 90.0 -0.7 149 671-820 122-283 (699)
191 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0083 1.8E-07 71.9 13.5 175 185-384 228-429 (489)
192 COG3267 ExeA Type II secretory 96.9 0.038 8.3E-07 58.5 16.4 179 206-393 49-248 (269)
193 KOG0991 Replication factor C, 96.9 0.012 2.6E-07 60.5 12.3 48 184-233 26-73 (333)
194 KOG3665 ZYG-1-like serine/thre 96.9 0.00048 1E-08 85.9 2.4 132 742-874 123-264 (699)
195 PLN00020 ribulose bisphosphate 96.9 0.018 3.8E-07 64.8 14.1 152 206-385 146-333 (413)
196 TIGR00763 lon ATP-dependent pr 96.8 0.024 5.2E-07 73.1 17.6 53 184-236 319-375 (775)
197 TIGR01243 CDC48 AAA family ATP 96.8 0.016 3.6E-07 74.4 15.7 172 185-384 453-657 (733)
198 KOG4579 Leucine-rich repeat (L 96.8 0.00018 3.9E-09 67.6 -1.6 104 838-983 29-134 (177)
199 PF01695 IstB_IS21: IstB-like 96.7 0.0017 3.8E-08 67.2 4.9 35 209-243 48-82 (178)
200 COG0542 clpA ATP-binding subun 96.7 0.0056 1.2E-07 75.6 9.9 119 184-314 490-618 (786)
201 KOG0744 AAA+-type ATPase [Post 96.7 0.013 2.8E-07 63.5 11.2 80 208-303 177-262 (423)
202 PRK06921 hypothetical protein; 96.7 0.005 1.1E-07 68.2 8.4 36 208-243 117-153 (266)
203 PRK10787 DNA-binding ATP-depen 96.7 0.031 6.7E-07 71.4 16.5 53 184-236 321-377 (784)
204 PRK10865 protein disaggregatio 96.7 0.027 5.8E-07 73.1 16.1 51 184-234 567-624 (857)
205 TIGR02640 gas_vesic_GvpN gas v 96.7 0.024 5.2E-07 63.0 13.8 39 192-234 9-47 (262)
206 COG1223 Predicted ATPase (AAA+ 96.7 0.024 5.1E-07 59.5 12.3 169 184-383 120-318 (368)
207 PRK06835 DNA replication prote 96.6 0.0074 1.6E-07 68.7 9.5 35 209-243 184-218 (329)
208 PF05621 TniB: Bacterial TniB 96.6 0.029 6.2E-07 61.8 13.5 198 185-390 34-261 (302)
209 cd01133 F1-ATPase_beta F1 ATP 96.6 0.0039 8.5E-08 68.1 6.9 93 208-303 69-175 (274)
210 COG5238 RNA1 Ran GTPase-activa 96.6 0.00073 1.6E-08 70.8 0.9 56 927-982 188-252 (388)
211 PRK08769 DNA polymerase III su 96.5 0.19 4.2E-06 56.9 20.0 94 290-391 112-209 (319)
212 TIGR02639 ClpA ATP-dependent C 96.5 0.028 6.1E-07 72.1 14.8 50 184-233 453-509 (731)
213 PRK06090 DNA polymerase III su 96.5 0.1 2.2E-06 59.1 17.2 107 290-409 107-217 (319)
214 PRK08058 DNA polymerase III su 96.5 0.034 7.3E-07 64.0 13.7 161 186-358 6-181 (329)
215 PRK12608 transcription termina 96.4 0.01 2.2E-07 67.4 9.0 103 197-303 123-232 (380)
216 TIGR03345 VI_ClpV1 type VI sec 96.4 0.017 3.7E-07 74.5 12.1 51 184-234 565-622 (852)
217 KOG2228 Origin recognition com 96.4 0.02 4.4E-07 62.5 10.6 172 184-358 23-218 (408)
218 COG5238 RNA1 Ran GTPase-activa 96.4 0.0014 3E-08 68.8 1.6 20 946-965 300-319 (388)
219 PHA00729 NTP-binding motif con 96.3 0.0092 2E-07 63.2 7.4 27 207-233 16-42 (226)
220 cd00561 CobA_CobO_BtuR ATP:cor 96.3 0.013 2.9E-07 58.6 8.2 119 209-330 3-139 (159)
221 PF04665 Pox_A32: Poxvirus A32 96.3 0.006 1.3E-07 65.4 5.9 33 210-242 15-47 (241)
222 PRK11331 5-methylcytosine-spec 96.3 0.011 2.3E-07 68.9 8.2 46 185-234 175-220 (459)
223 PRK08939 primosomal protein Dn 96.3 0.018 4E-07 65.0 10.0 55 189-243 135-191 (306)
224 PRK09361 radB DNA repair and r 96.3 0.011 2.3E-07 64.4 7.9 48 196-243 11-58 (225)
225 COG0542 clpA ATP-binding subun 96.3 0.017 3.6E-07 71.6 10.0 154 183-358 168-345 (786)
226 PRK04132 replication factor C 96.2 0.17 3.7E-06 64.3 19.0 150 216-387 574-728 (846)
227 KOG0730 AAA+-type ATPase [Post 96.2 0.042 9.1E-07 65.5 12.7 153 186-362 435-618 (693)
228 COG1484 DnaC DNA replication p 96.2 0.016 3.6E-07 63.6 9.0 37 207-243 104-140 (254)
229 KOG1947 Leucine rich repeat pr 96.2 0.00065 1.4E-08 83.6 -2.4 34 623-656 187-223 (482)
230 KOG0733 Nuclear AAA ATPase (VC 96.2 0.061 1.3E-06 63.3 13.3 153 184-360 189-375 (802)
231 KOG0735 AAA+-type ATPase [Post 96.2 0.05 1.1E-06 65.1 12.7 159 208-390 431-616 (952)
232 smart00763 AAA_PrkA PrkA AAA d 96.2 0.017 3.7E-07 65.5 8.7 48 186-233 52-103 (361)
233 PF02562 PhoH: PhoH-like prote 96.1 0.0088 1.9E-07 62.7 6.0 117 207-331 18-158 (205)
234 TIGR03346 chaperone_ClpB ATP-d 96.1 0.022 4.8E-07 74.2 10.7 51 184-234 564-621 (852)
235 KOG0741 AAA+-type ATPase [Post 96.1 0.053 1.2E-06 62.5 12.1 126 206-358 536-685 (744)
236 KOG0731 AAA+-type ATPase conta 96.1 0.12 2.6E-06 63.7 16.0 179 182-386 308-520 (774)
237 PRK06871 DNA polymerase III su 96.1 0.12 2.6E-06 58.7 15.0 91 290-387 106-200 (325)
238 PRK10733 hflB ATP-dependent me 96.1 0.084 1.8E-06 66.4 15.2 152 186-361 153-337 (644)
239 PRK06964 DNA polymerase III su 96.1 0.29 6.3E-06 56.0 18.1 91 290-390 131-225 (342)
240 PRK05541 adenylylsulfate kinas 96.0 0.039 8.4E-07 57.4 10.4 36 207-242 6-41 (176)
241 PF13207 AAA_17: AAA domain; P 96.0 0.0054 1.2E-07 59.3 3.6 23 210-232 1-23 (121)
242 CHL00095 clpC Clp protease ATP 96.0 0.04 8.6E-07 71.6 12.6 117 184-312 508-634 (821)
243 KOG1514 Origin recognition com 96.0 0.18 3.9E-06 60.8 16.6 200 182-392 393-623 (767)
244 PRK00771 signal recognition pa 96.0 0.082 1.8E-06 62.5 14.0 29 207-235 94-122 (437)
245 PF07693 KAP_NTPase: KAP famil 96.0 0.26 5.6E-06 57.0 18.3 45 191-235 2-47 (325)
246 COG2812 DnaX DNA polymerase II 96.0 0.24 5.2E-06 59.2 17.8 186 183-384 14-214 (515)
247 PRK11034 clpA ATP-dependent Cl 96.0 0.027 5.8E-07 71.3 10.6 50 184-233 457-513 (758)
248 PF00448 SRP54: SRP54-type pro 96.0 0.014 3.1E-07 61.4 6.8 28 208-235 1-28 (196)
249 KOG1644 U2-associated snRNP A' 96.0 0.01 2.2E-07 60.2 5.2 103 742-846 43-150 (233)
250 cd01120 RecA-like_NTPases RecA 96.0 0.015 3.3E-07 59.4 6.9 34 210-243 1-34 (165)
251 PRK07993 DNA polymerase III su 96.0 0.14 3E-06 58.8 15.1 93 290-389 107-203 (334)
252 cd01394 radB RadB. The archaea 95.9 0.022 4.8E-07 61.6 8.1 49 195-243 6-54 (218)
253 KOG1947 Leucine rich repeat pr 95.9 0.0024 5.2E-08 78.6 0.5 80 788-867 242-328 (482)
254 PF00158 Sigma54_activat: Sigm 95.8 0.034 7.5E-07 56.9 8.6 45 187-231 1-45 (168)
255 KOG2004 Mitochondrial ATP-depe 95.8 0.024 5.3E-07 67.7 8.3 53 185-237 411-467 (906)
256 COG1618 Predicted nucleotide k 95.8 0.0087 1.9E-07 58.4 3.8 40 209-248 6-47 (179)
257 KOG0733 Nuclear AAA ATPase (VC 95.8 0.081 1.7E-06 62.3 12.2 129 208-360 545-693 (802)
258 TIGR02237 recomb_radB DNA repa 95.8 0.015 3.3E-07 62.4 6.1 44 200-243 4-47 (209)
259 PRK06696 uridine kinase; Valid 95.7 0.014 3E-07 63.3 5.7 46 190-235 3-49 (223)
260 PRK04296 thymidine kinase; Pro 95.7 0.038 8.3E-07 58.1 8.6 110 209-330 3-117 (190)
261 PRK11889 flhF flagellar biosyn 95.7 0.12 2.6E-06 59.2 12.8 28 207-234 240-267 (436)
262 KOG0727 26S proteasome regulat 95.7 0.084 1.8E-06 55.0 10.4 51 186-236 156-217 (408)
263 cd01393 recA_like RecA is a b 95.6 0.051 1.1E-06 59.2 9.5 48 196-243 7-60 (226)
264 PRK06762 hypothetical protein; 95.6 0.054 1.2E-06 55.7 9.2 25 208-232 2-26 (166)
265 COG2607 Predicted ATPase (AAA+ 95.6 0.055 1.2E-06 56.5 8.9 54 185-238 60-115 (287)
266 PF13177 DNA_pol3_delta2: DNA 95.6 0.11 2.3E-06 53.1 11.1 43 189-232 1-43 (162)
267 TIGR01359 UMP_CMP_kin_fam UMP- 95.6 0.07 1.5E-06 55.9 10.1 23 210-232 1-23 (183)
268 cd01131 PilT Pilus retraction 95.6 0.054 1.2E-06 57.4 9.1 110 209-332 2-112 (198)
269 PRK07261 topology modulation p 95.5 0.037 8.1E-07 57.1 7.5 23 210-232 2-24 (171)
270 PF01583 APS_kinase: Adenylyls 95.5 0.0098 2.1E-07 59.3 3.0 36 208-243 2-37 (156)
271 PRK07667 uridine kinase; Provi 95.5 0.025 5.5E-07 59.7 6.3 41 195-235 4-44 (193)
272 cd01123 Rad51_DMC1_radA Rad51_ 95.5 0.031 6.7E-07 61.3 7.2 37 196-232 7-43 (235)
273 TIGR00064 ftsY signal recognit 95.5 0.13 2.9E-06 57.1 12.1 30 206-235 70-99 (272)
274 cd00983 recA RecA is a bacter 95.4 0.043 9.4E-07 61.9 8.2 48 196-243 42-90 (325)
275 COG0488 Uup ATPase components 95.4 0.25 5.4E-06 60.0 15.2 57 283-345 449-511 (530)
276 cd01121 Sms Sms (bacterial rad 95.4 0.06 1.3E-06 62.5 9.6 49 195-243 69-117 (372)
277 PRK08118 topology modulation p 95.4 0.012 2.5E-07 60.4 3.4 24 210-233 3-26 (167)
278 TIGR02012 tigrfam_recA protein 95.4 0.038 8.3E-07 62.3 7.6 48 196-243 42-90 (321)
279 PF13671 AAA_33: AAA domain; P 95.4 0.02 4.4E-07 57.1 5.0 24 210-233 1-24 (143)
280 PF14532 Sigma54_activ_2: Sigm 95.4 0.011 2.4E-07 58.6 3.0 45 188-232 1-45 (138)
281 COG0470 HolB ATPase involved i 95.4 0.1 2.2E-06 60.3 11.6 49 186-234 2-50 (325)
282 PRK06067 flagellar accessory p 95.3 0.051 1.1E-06 59.5 8.3 49 195-243 12-60 (234)
283 PRK09354 recA recombinase A; P 95.3 0.048 1E-06 62.0 8.1 98 195-301 46-148 (349)
284 PRK08699 DNA polymerase III su 95.2 0.34 7.5E-06 55.3 14.8 85 292-386 114-202 (325)
285 COG0572 Udk Uridine kinase [Nu 95.2 0.034 7.4E-07 58.2 5.9 30 206-235 6-35 (218)
286 PRK15455 PrkA family serine pr 95.2 0.027 5.8E-07 67.1 5.6 53 182-234 73-129 (644)
287 TIGR01650 PD_CobS cobaltochela 95.1 0.33 7.2E-06 54.6 13.9 50 184-237 44-93 (327)
288 PRK10867 signal recognition pa 95.1 0.37 8E-06 57.0 14.9 29 207-235 99-127 (433)
289 PRK12723 flagellar biosynthesi 95.1 0.19 4.1E-06 58.5 12.4 27 207-233 173-199 (388)
290 cd02027 APSK Adenosine 5'-phos 95.1 0.11 2.5E-06 52.1 9.4 24 210-233 1-24 (149)
291 TIGR02902 spore_lonB ATP-depen 95.1 0.11 2.3E-06 64.0 10.9 46 184-231 64-109 (531)
292 KOG0728 26S proteasome regulat 95.1 1.2 2.5E-05 46.8 16.3 143 189-359 151-331 (404)
293 KOG2739 Leucine-rich acidic nu 95.1 0.013 2.8E-07 62.1 2.5 84 920-1006 62-156 (260)
294 COG0464 SpoVK ATPases of the A 95.0 0.19 4.2E-06 61.7 12.9 152 186-361 243-425 (494)
295 PF00406 ADK: Adenylate kinase 95.0 0.061 1.3E-06 54.3 7.1 90 213-310 1-93 (151)
296 PF13604 AAA_30: AAA domain; P 95.0 0.13 2.9E-06 54.3 9.8 40 193-235 6-45 (196)
297 PRK14974 cell division protein 95.0 0.36 7.9E-06 55.1 13.9 29 207-235 139-167 (336)
298 KOG1644 U2-associated snRNP A' 95.0 0.032 7E-07 56.7 4.7 83 620-704 60-150 (233)
299 cd01129 PulE-GspE PulE/GspE Th 95.0 0.11 2.3E-06 57.8 9.4 103 192-311 67-169 (264)
300 PF08423 Rad51: Rad51; InterP 95.0 0.05 1.1E-06 60.0 6.8 37 195-231 25-61 (256)
301 cd01858 NGP_1 NGP-1. Autoanti 94.9 0.16 3.5E-06 51.6 9.9 42 189-230 82-124 (157)
302 TIGR03877 thermo_KaiC_1 KaiC d 94.9 0.099 2.1E-06 57.2 8.9 49 195-243 8-56 (237)
303 TIGR03499 FlhF flagellar biosy 94.9 0.12 2.5E-06 58.1 9.5 28 207-234 193-220 (282)
304 PRK05986 cob(I)alamin adenolsy 94.8 0.11 2.3E-06 53.7 8.3 121 207-330 21-159 (191)
305 COG1066 Sms Predicted ATP-depe 94.8 0.15 3.3E-06 57.7 9.9 49 194-243 79-127 (456)
306 KOG0734 AAA+-type ATPase conta 94.8 0.18 3.9E-06 58.5 10.6 148 184-359 303-484 (752)
307 PTZ00088 adenylate kinase 1; P 94.8 0.09 1.9E-06 56.8 8.0 22 211-232 9-30 (229)
308 PRK12727 flagellar biosynthesi 94.7 0.29 6.4E-06 58.3 12.7 47 189-235 327-377 (559)
309 cd03228 ABCC_MRP_Like The MRP 94.7 0.14 3E-06 52.9 9.1 127 207-343 27-167 (171)
310 PRK10416 signal recognition pa 94.7 0.26 5.7E-06 56.1 11.9 29 207-235 113-141 (318)
311 TIGR01425 SRP54_euk signal rec 94.7 0.53 1.1E-05 55.3 14.6 29 207-235 99-127 (429)
312 PF13238 AAA_18: AAA domain; P 94.7 0.026 5.7E-07 55.0 3.4 22 211-232 1-22 (129)
313 PRK04328 hypothetical protein; 94.7 0.14 3.1E-06 56.3 9.5 48 196-243 11-58 (249)
314 PF00485 PRK: Phosphoribulokin 94.6 0.03 6.5E-07 59.3 3.9 26 210-235 1-26 (194)
315 cd03238 ABC_UvrA The excision 94.6 0.15 3.2E-06 52.7 8.8 22 208-229 21-42 (176)
316 TIGR00708 cobA cob(I)alamin ad 94.6 0.16 3.4E-06 51.7 8.8 121 208-330 5-141 (173)
317 PF07726 AAA_3: ATPase family 94.6 0.019 4.2E-07 54.5 2.1 29 211-239 2-30 (131)
318 KOG0743 AAA+-type ATPase [Post 94.6 0.48 1E-05 54.7 13.4 149 209-394 236-413 (457)
319 cd00544 CobU Adenosylcobinamid 94.6 0.073 1.6E-06 54.5 6.3 79 211-300 2-82 (169)
320 cd03223 ABCD_peroxisomal_ALDP 94.6 0.14 3E-06 52.6 8.5 124 208-343 27-160 (166)
321 TIGR02858 spore_III_AA stage I 94.5 0.13 2.8E-06 56.9 8.7 118 206-332 109-232 (270)
322 KOG0652 26S proteasome regulat 94.5 0.77 1.7E-05 48.4 13.5 164 185-376 171-373 (424)
323 TIGR00959 ffh signal recogniti 94.5 0.77 1.7E-05 54.3 15.5 27 207-233 98-124 (428)
324 cd01130 VirB11-like_ATPase Typ 94.5 0.062 1.3E-06 56.4 5.7 94 208-310 25-119 (186)
325 PF10137 TIR-like: Predicted n 94.4 0.081 1.8E-06 50.6 5.9 62 15-79 1-62 (125)
326 COG1121 ZnuC ABC-type Mn/Zn tr 94.4 0.13 2.8E-06 55.6 7.8 52 281-334 147-204 (254)
327 KOG0651 26S proteasome regulat 94.3 0.1 2.2E-06 56.6 6.9 30 207-236 165-194 (388)
328 COG0468 RecA RecA/RadA recombi 94.3 0.13 2.8E-06 56.7 8.0 47 197-243 49-95 (279)
329 PF08433 KTI12: Chromatin asso 94.3 0.15 3.3E-06 56.4 8.6 26 209-234 2-27 (270)
330 KOG0739 AAA+-type ATPase [Post 94.3 0.48 1E-05 51.0 11.6 47 186-232 134-190 (439)
331 PRK00889 adenylylsulfate kinas 94.3 0.2 4.4E-06 51.9 9.1 27 208-234 4-30 (175)
332 PRK11823 DNA repair protein Ra 94.3 0.17 3.7E-06 60.6 9.5 49 195-243 67-115 (446)
333 TIGR02238 recomb_DMC1 meiotic 94.3 0.11 2.3E-06 59.1 7.4 36 195-230 83-118 (313)
334 PLN03187 meiotic recombination 94.3 0.094 2E-06 59.9 7.0 36 195-230 113-148 (344)
335 PRK14527 adenylate kinase; Pro 94.2 0.16 3.4E-06 53.6 8.3 26 207-232 5-30 (191)
336 PRK12724 flagellar biosynthesi 94.2 0.46 1E-05 55.3 12.4 25 208-232 223-247 (432)
337 KOG2123 Uncharacterized conser 94.2 0.0066 1.4E-07 64.2 -2.2 97 672-771 20-123 (388)
338 COG4088 Predicted nucleotide k 94.2 0.24 5.3E-06 50.5 8.8 27 209-235 2-28 (261)
339 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.2 0.15 3.2E-06 51.0 7.5 101 207-333 25-131 (144)
340 KOG1051 Chaperone HSP104 and r 94.1 0.3 6.6E-06 61.7 11.5 105 185-304 562-673 (898)
341 TIGR00416 sms DNA repair prote 94.1 0.18 4E-06 60.4 9.4 50 194-243 80-129 (454)
342 PRK05703 flhF flagellar biosyn 94.0 0.28 6E-06 58.3 10.6 26 208-233 221-246 (424)
343 PRK09270 nucleoside triphospha 94.0 0.072 1.6E-06 58.0 5.3 32 204-235 29-60 (229)
344 PRK03839 putative kinase; Prov 94.0 0.042 9.1E-07 57.4 3.4 24 210-233 2-25 (180)
345 cd01857 HSR1_MMR1 HSR1/MMR1. 94.0 0.3 6.5E-06 48.6 9.3 50 59-110 3-53 (141)
346 cd02019 NK Nucleoside/nucleoti 94.0 0.045 9.7E-07 46.7 2.9 23 210-232 1-23 (69)
347 TIGR00150 HI0065_YjeE ATPase, 94.0 0.082 1.8E-06 51.3 4.9 41 193-233 7-47 (133)
348 PTZ00301 uridine kinase; Provi 94.0 0.048 1E-06 58.0 3.7 29 208-236 3-31 (210)
349 COG1224 TIP49 DNA helicase TIP 94.0 0.22 4.7E-06 55.2 8.6 56 183-238 37-95 (450)
350 PRK00279 adk adenylate kinase; 94.0 0.18 3.9E-06 54.3 8.2 23 210-232 2-24 (215)
351 cd03247 ABCC_cytochrome_bd The 93.9 0.23 5.1E-06 51.6 8.8 25 208-232 28-52 (178)
352 TIGR03574 selen_PSTK L-seryl-t 93.9 0.11 2.3E-06 57.6 6.6 24 211-234 2-25 (249)
353 PRK05480 uridine/cytidine kina 93.9 0.05 1.1E-06 58.3 3.9 27 206-232 4-30 (209)
354 PRK12726 flagellar biosynthesi 93.9 0.41 9E-06 54.7 11.1 29 207-235 205-233 (407)
355 PF10236 DAP3: Mitochondrial r 93.9 0.89 1.9E-05 51.7 14.1 48 340-387 258-306 (309)
356 PRK08356 hypothetical protein; 93.9 0.36 7.7E-06 51.1 10.2 21 209-229 6-26 (195)
357 PRK08233 hypothetical protein; 93.9 0.045 9.8E-07 57.2 3.4 26 208-233 3-28 (182)
358 PRK00625 shikimate kinase; Pro 93.9 0.047 1E-06 56.2 3.3 24 210-233 2-25 (173)
359 TIGR01351 adk adenylate kinase 93.9 0.21 4.5E-06 53.6 8.5 22 211-232 2-23 (210)
360 PF00560 LRR_1: Leucine Rich R 93.8 0.024 5.2E-07 36.0 0.7 21 950-970 1-21 (22)
361 PRK11608 pspF phage shock prot 93.8 0.15 3.3E-06 58.6 7.7 46 185-230 6-51 (326)
362 COG1875 NYN ribonuclease and A 93.8 0.29 6.2E-06 54.5 9.2 37 292-331 352-390 (436)
363 TIGR01420 pilT_fam pilus retra 93.8 0.13 2.8E-06 59.6 7.1 108 208-329 122-230 (343)
364 TIGR01817 nifA Nif-specific re 93.8 0.37 8E-06 59.8 11.6 50 183-232 194-243 (534)
365 PRK14528 adenylate kinase; Pro 93.8 0.24 5.2E-06 51.9 8.5 24 209-232 2-25 (186)
366 KOG0726 26S proteasome regulat 93.7 0.29 6.3E-06 52.4 8.8 53 185-237 185-248 (440)
367 PRK13531 regulatory ATPase Rav 93.7 0.075 1.6E-06 62.7 5.0 47 184-234 19-65 (498)
368 KOG4579 Leucine-rich repeat (L 93.7 0.0096 2.1E-07 56.4 -1.9 77 580-656 54-132 (177)
369 KOG1969 DNA replication checkp 93.7 0.16 3.4E-06 61.4 7.5 28 205-232 323-350 (877)
370 CHL00206 ycf2 Ycf2; Provisiona 93.7 0.56 1.2E-05 63.3 13.1 26 207-232 1629-1654(2281)
371 PF00437 T2SE: Type II/IV secr 93.6 0.049 1.1E-06 61.1 3.3 126 186-329 105-232 (270)
372 COG0563 Adk Adenylate kinase a 93.6 0.18 3.8E-06 52.1 7.1 23 210-232 2-24 (178)
373 TIGR00235 udk uridine kinase. 93.6 0.068 1.5E-06 57.2 4.2 28 206-233 4-31 (207)
374 KOG1970 Checkpoint RAD17-RFC c 93.6 0.89 1.9E-05 53.5 13.1 42 191-232 88-134 (634)
375 PRK04040 adenylate kinase; Pro 93.6 0.066 1.4E-06 56.0 3.9 25 209-233 3-27 (188)
376 PRK05800 cobU adenosylcobinami 93.6 0.54 1.2E-05 48.3 10.5 23 210-232 3-25 (170)
377 COG2884 FtsE Predicted ATPase 93.5 0.29 6.2E-06 49.6 7.9 57 278-336 142-204 (223)
378 PF00910 RNA_helicase: RNA hel 93.5 0.045 9.7E-07 51.5 2.3 25 211-235 1-25 (107)
379 PRK14722 flhF flagellar biosyn 93.5 0.47 1E-05 54.8 10.9 30 207-236 136-165 (374)
380 PRK04301 radA DNA repair and r 93.5 0.19 4.2E-06 57.6 7.9 37 196-232 90-126 (317)
381 cd03246 ABCC_Protease_Secretio 93.5 0.23 5E-06 51.4 7.8 127 208-343 28-168 (173)
382 PRK00131 aroK shikimate kinase 93.5 0.062 1.4E-06 55.7 3.6 26 208-233 4-29 (175)
383 PF08298 AAA_PrkA: PrkA AAA do 93.5 0.32 6.8E-06 54.9 9.1 52 184-235 60-115 (358)
384 KOG2739 Leucine-rich acidic nu 93.5 0.049 1.1E-06 57.9 2.7 83 811-893 64-153 (260)
385 TIGR02655 circ_KaiC circadian 93.5 0.2 4.2E-06 61.1 8.3 50 194-243 249-298 (484)
386 PF06068 TIP49: TIP49 C-termin 93.5 0.27 5.9E-06 55.4 8.5 59 183-241 22-83 (398)
387 COG0465 HflB ATP-dependent Zn 93.4 0.5 1.1E-05 57.3 11.3 155 183-361 148-335 (596)
388 PTZ00035 Rad51 protein; Provis 93.4 0.25 5.3E-06 56.8 8.5 37 195-231 105-141 (337)
389 COG5635 Predicted NTPase (NACH 93.4 0.47 1E-05 61.9 12.1 224 210-442 224-482 (824)
390 COG0529 CysC Adenylylsulfate k 93.4 0.12 2.6E-06 51.6 4.9 34 206-239 21-54 (197)
391 KOG2035 Replication factor C, 93.4 1.6 3.4E-05 47.0 13.3 208 186-410 14-259 (351)
392 KOG0729 26S proteasome regulat 93.3 0.29 6.2E-06 51.6 7.8 48 186-233 178-236 (435)
393 PRK09280 F0F1 ATP synthase sub 93.3 0.17 3.6E-06 59.7 7.0 93 208-303 144-250 (463)
394 cd02021 GntK Gluconate kinase 93.3 0.29 6.3E-06 49.2 8.0 23 210-232 1-23 (150)
395 KOG0066 eIF2-interacting prote 93.3 1.7 3.8E-05 49.2 14.2 23 208-230 613-635 (807)
396 cd03115 SRP The signal recogni 93.3 0.46 9.9E-06 49.2 9.6 26 210-235 2-27 (173)
397 TIGR00390 hslU ATP-dependent p 93.3 0.12 2.5E-06 59.8 5.4 53 184-236 11-75 (441)
398 PF03308 ArgK: ArgK protein; 93.3 0.21 4.6E-06 53.6 7.0 41 195-235 16-56 (266)
399 cd03214 ABC_Iron-Siderophores_ 93.3 0.36 7.7E-06 50.3 8.8 122 207-332 24-161 (180)
400 PF07728 AAA_5: AAA domain (dy 93.3 0.069 1.5E-06 53.0 3.3 22 211-232 2-23 (139)
401 cd01428 ADK Adenylate kinase ( 93.2 0.53 1.1E-05 49.7 10.3 22 211-232 2-23 (194)
402 PRK06547 hypothetical protein; 93.2 0.086 1.9E-06 54.2 4.0 27 206-232 13-39 (172)
403 PRK14531 adenylate kinase; Pro 93.2 0.41 9E-06 50.0 9.2 23 210-232 4-26 (183)
404 PRK14529 adenylate kinase; Pro 93.2 0.41 8.9E-06 51.2 9.2 91 211-309 3-95 (223)
405 COG4608 AppF ABC-type oligopep 93.2 0.29 6.3E-06 52.9 7.9 125 207-335 38-176 (268)
406 TIGR00455 apsK adenylylsulfate 93.2 0.44 9.5E-06 49.9 9.3 27 207-233 17-43 (184)
407 cd01125 repA Hexameric Replica 93.2 0.67 1.4E-05 50.8 11.2 24 210-233 3-26 (239)
408 PRK13947 shikimate kinase; Pro 93.1 0.07 1.5E-06 55.1 3.2 26 210-235 3-28 (171)
409 cd01122 GP4d_helicase GP4d_hel 93.1 0.56 1.2E-05 52.6 10.8 37 207-243 29-66 (271)
410 cd03216 ABC_Carb_Monos_I This 93.1 0.19 4.2E-06 51.3 6.4 117 208-333 26-146 (163)
411 PRK14526 adenylate kinase; Pro 93.1 0.41 8.8E-06 51.1 9.0 22 211-232 3-24 (211)
412 cd03240 ABC_Rad50 The catalyti 93.1 0.35 7.6E-06 51.5 8.5 21 209-229 23-43 (204)
413 TIGR02782 TrbB_P P-type conjug 93.0 0.37 8E-06 54.5 9.0 89 209-310 133-223 (299)
414 TIGR01360 aden_kin_iso1 adenyl 93.0 0.079 1.7E-06 55.7 3.5 26 207-232 2-27 (188)
415 PRK03846 adenylylsulfate kinas 93.0 0.19 4.2E-06 53.3 6.4 37 206-242 22-58 (198)
416 cd01124 KaiC KaiC is a circadi 93.0 0.22 4.7E-06 52.3 6.7 33 211-243 2-34 (187)
417 COG4240 Predicted kinase [Gene 92.8 0.31 6.7E-06 50.5 7.1 86 206-293 48-135 (300)
418 cd03232 ABC_PDR_domain2 The pl 92.8 0.53 1.2E-05 49.6 9.4 23 208-230 33-55 (192)
419 TIGR02239 recomb_RAD51 DNA rep 92.8 0.27 5.8E-06 56.0 7.6 36 195-230 83-118 (316)
420 PRK05201 hslU ATP-dependent pr 92.8 0.16 3.4E-06 58.8 5.6 52 184-235 14-77 (443)
421 cd03222 ABC_RNaseL_inhibitor T 92.8 0.28 6.1E-06 50.7 6.9 104 208-333 25-136 (177)
422 TIGR02788 VirB11 P-type DNA tr 92.8 0.24 5.1E-06 56.5 7.1 111 207-330 143-254 (308)
423 PF07724 AAA_2: AAA domain (Cd 92.7 0.095 2.1E-06 53.8 3.5 42 208-250 3-45 (171)
424 COG2274 SunT ABC-type bacterio 92.7 0.27 5.8E-06 61.9 8.1 23 208-230 499-521 (709)
425 COG1419 FlhF Flagellar GTP-bin 92.7 0.5 1.1E-05 54.2 9.3 26 208-233 203-228 (407)
426 cd00227 CPT Chloramphenicol (C 92.7 0.096 2.1E-06 54.3 3.5 25 209-233 3-27 (175)
427 PF00006 ATP-synt_ab: ATP synt 92.7 0.21 4.5E-06 53.2 6.0 26 209-234 16-41 (215)
428 PF00154 RecA: recA bacterial 92.7 0.4 8.7E-06 54.0 8.5 104 195-304 39-144 (322)
429 PRK15429 formate hydrogenlyase 92.6 0.22 4.7E-06 63.8 7.3 48 185-232 376-423 (686)
430 PRK12678 transcription termina 92.6 0.22 4.7E-06 59.4 6.5 94 208-304 416-516 (672)
431 PRK05022 anaerobic nitric oxid 92.6 0.17 3.8E-06 62.0 6.1 49 184-232 186-234 (509)
432 COG2401 ABC-type ATPase fused 92.6 0.35 7.6E-06 54.6 7.7 55 281-340 515-579 (593)
433 TIGR02236 recomb_radA DNA repa 92.6 0.35 7.5E-06 55.4 8.2 37 196-232 83-119 (310)
434 TIGR03575 selen_PSTK_euk L-ser 92.5 0.26 5.6E-06 56.2 6.9 23 211-233 2-24 (340)
435 COG3640 CooC CO dehydrogenase 92.5 0.37 8.1E-06 50.6 7.3 37 210-246 2-38 (255)
436 COG0396 sufC Cysteine desulfur 92.5 0.63 1.4E-05 48.8 8.9 60 282-341 153-216 (251)
437 TIGR01069 mutS2 MutS2 family p 92.5 0.35 7.6E-06 61.9 8.7 111 290-410 401-521 (771)
438 cd03217 ABC_FeS_Assembly ABC-t 92.4 0.35 7.5E-06 51.4 7.4 25 207-231 25-49 (200)
439 PRK05973 replicative DNA helic 92.4 0.39 8.4E-06 51.9 7.7 38 206-243 62-99 (237)
440 PRK12597 F0F1 ATP synthase sub 92.4 0.27 5.9E-06 58.3 7.0 92 208-302 143-248 (461)
441 PRK05439 pantothenate kinase; 92.3 0.18 4E-06 56.6 5.4 31 204-234 82-112 (311)
442 COG3854 SpoIIIAA ncharacterize 92.3 0.68 1.5E-05 48.2 8.8 110 210-329 139-253 (308)
443 PRK02496 adk adenylate kinase; 92.3 0.42 9.1E-06 50.0 7.9 23 210-232 3-25 (184)
444 cd02028 UMPK_like Uridine mono 92.3 0.13 2.9E-06 53.4 4.0 25 210-234 1-25 (179)
445 COG1428 Deoxynucleoside kinase 92.3 0.11 2.3E-06 53.8 3.1 26 208-233 4-29 (216)
446 PLN02674 adenylate kinase 92.3 0.83 1.8E-05 49.6 10.0 24 209-232 32-55 (244)
447 PRK13949 shikimate kinase; Pro 92.2 0.11 2.4E-06 53.4 3.1 24 210-233 3-26 (169)
448 TIGR01039 atpD ATP synthase, F 92.2 0.31 6.7E-06 57.4 7.1 93 208-303 143-249 (461)
449 PRK13948 shikimate kinase; Pro 92.2 0.13 2.7E-06 53.5 3.6 28 207-234 9-36 (182)
450 PLN03186 DNA repair protein RA 92.1 0.35 7.5E-06 55.5 7.4 36 195-230 110-145 (342)
451 PF03205 MobB: Molybdopterin g 92.1 0.19 4.1E-06 49.8 4.6 27 209-235 1-27 (140)
452 COG2842 Uncharacterized ATPase 92.1 1.6 3.6E-05 47.7 11.9 120 182-314 69-190 (297)
453 cd00267 ABC_ATPase ABC (ATP-bi 92.1 0.22 4.7E-06 50.7 5.2 122 209-343 26-153 (157)
454 cd02024 NRK1 Nicotinamide ribo 92.1 0.099 2.1E-06 54.4 2.6 23 210-232 1-23 (187)
455 PRK06217 hypothetical protein; 92.1 0.11 2.4E-06 54.4 3.0 24 210-233 3-26 (183)
456 cd02025 PanK Pantothenate kina 92.1 0.099 2.1E-06 56.3 2.8 24 210-233 1-24 (220)
457 PHA02244 ATPase-like protein 92.1 0.18 3.8E-06 57.5 4.8 49 182-234 93-145 (383)
458 cd03230 ABC_DR_subfamily_A Thi 92.1 0.49 1.1E-05 48.9 7.9 25 208-232 26-50 (173)
459 TIGR02768 TraA_Ti Ti-type conj 92.0 0.64 1.4E-05 59.6 10.3 25 25-49 176-200 (744)
460 KOG3928 Mitochondrial ribosome 92.0 1.6 3.5E-05 49.6 12.0 53 339-394 404-460 (461)
461 PRK06995 flhF flagellar biosyn 92.0 0.81 1.7E-05 54.7 10.4 26 208-233 256-281 (484)
462 cd02023 UMPK Uridine monophosp 91.9 0.11 2.3E-06 55.2 2.8 23 210-232 1-23 (198)
463 KOG0736 Peroxisome assembly fa 91.9 1.5 3.3E-05 53.7 12.3 95 186-304 673-777 (953)
464 KOG1532 GTPase XAB1, interacts 91.9 0.19 4.1E-06 53.4 4.3 42 206-248 17-58 (366)
465 cd02020 CMPK Cytidine monophos 91.9 0.12 2.6E-06 51.8 3.0 24 210-233 1-24 (147)
466 cd00464 SK Shikimate kinase (S 91.8 0.13 2.9E-06 51.9 3.3 23 211-233 2-24 (154)
467 PRK13946 shikimate kinase; Pro 91.8 0.13 2.8E-06 53.9 3.2 26 208-233 10-35 (184)
468 PRK10463 hydrogenase nickel in 91.8 0.27 5.8E-06 54.5 5.7 36 206-241 102-137 (290)
469 COG0703 AroK Shikimate kinase 91.8 0.14 2.9E-06 51.8 3.2 27 210-236 4-30 (172)
470 PRK10751 molybdopterin-guanine 91.8 0.18 3.9E-06 51.5 4.0 28 207-234 5-32 (173)
471 PLN02459 probable adenylate ki 91.8 0.67 1.4E-05 50.6 8.6 93 210-310 31-128 (261)
472 PRK13826 Dtr system oriT relax 91.7 0.49 1.1E-05 62.0 8.8 41 25-66 194-241 (1102)
473 PRK07132 DNA polymerase III su 91.7 5.5 0.00012 44.9 16.2 93 290-390 89-185 (299)
474 TIGR02322 phosphon_PhnN phosph 91.7 0.13 2.9E-06 53.5 3.2 25 209-233 2-26 (179)
475 TIGR02524 dot_icm_DotB Dot/Icm 91.7 0.22 4.9E-06 57.6 5.3 95 208-310 134-231 (358)
476 PRK10820 DNA-binding transcrip 91.7 0.52 1.1E-05 58.0 8.8 49 183-231 202-250 (520)
477 PRK05537 bifunctional sulfate 91.7 0.25 5.3E-06 61.0 5.9 52 183-234 367-418 (568)
478 cd00071 GMPK Guanosine monopho 91.7 0.12 2.5E-06 51.1 2.6 26 210-235 1-26 (137)
479 PRK05342 clpX ATP-dependent pr 91.7 0.23 5E-06 58.5 5.4 50 185-234 71-134 (412)
480 TIGR01313 therm_gnt_kin carboh 91.7 0.55 1.2E-05 48.0 7.6 22 211-232 1-22 (163)
481 PRK09302 circadian clock prote 91.6 0.59 1.3E-05 57.6 9.2 125 194-326 17-174 (509)
482 COG1102 Cmk Cytidylate kinase 91.6 0.15 3.2E-06 50.1 3.0 25 210-234 2-26 (179)
483 PRK00409 recombination and DNA 91.6 0.53 1.1E-05 60.4 8.9 111 290-410 406-526 (782)
484 KOG2123 Uncharacterized conser 91.5 0.03 6.4E-07 59.4 -1.9 75 579-653 41-123 (388)
485 COG4133 CcmA ABC-type transpor 91.5 0.17 3.7E-06 51.1 3.5 22 209-230 29-50 (209)
486 cd03283 ABC_MutS-like MutS-lik 91.5 0.79 1.7E-05 48.5 8.8 23 209-231 26-48 (199)
487 PF03266 NTPase_1: NTPase; In 91.5 0.19 4.2E-06 51.4 4.0 24 211-234 2-25 (168)
488 PRK05057 aroK shikimate kinase 91.5 0.16 3.5E-06 52.4 3.4 26 208-233 4-29 (172)
489 TIGR02329 propionate_PrpR prop 91.5 1.9 4.2E-05 52.7 13.1 48 184-231 211-258 (526)
490 PRK09519 recA DNA recombinatio 91.4 0.44 9.5E-06 60.0 7.7 49 195-243 46-95 (790)
491 TIGR00665 DnaB replicative DNA 91.4 1.4 3E-05 53.2 11.9 70 189-266 177-247 (434)
492 COG1703 ArgK Putative periplas 91.4 0.34 7.3E-06 52.8 5.8 41 195-235 38-78 (323)
493 PRK08972 fliI flagellum-specif 91.4 0.45 9.8E-06 55.7 7.3 38 208-248 162-199 (444)
494 KOG0735 AAA+-type ATPase [Post 91.4 2.9 6.2E-05 50.8 13.7 174 185-386 667-872 (952)
495 COG4618 ArpD ABC-type protease 91.4 0.35 7.7E-06 56.2 6.2 22 209-230 363-384 (580)
496 KOG0730 AAA+-type ATPase [Post 91.3 1.2 2.7E-05 53.6 10.8 153 185-361 184-366 (693)
497 PF00625 Guanylate_kin: Guanyl 91.3 0.18 3.9E-06 52.8 3.7 34 208-241 2-35 (183)
498 cd01132 F1_ATPase_alpha F1 ATP 91.3 0.41 9E-06 52.5 6.4 91 208-303 69-173 (274)
499 cd03281 ABC_MSH5_euk MutS5 hom 91.3 0.78 1.7E-05 49.2 8.5 23 208-230 29-51 (213)
500 PF06309 Torsin: Torsin; Inte 91.2 0.37 8E-06 45.9 5.2 48 185-232 25-77 (127)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2e-135 Score=1340.75 Aligned_cols=1060 Identities=34% Similarity=0.547 Sum_probs=830.1
Q ss_pred CCCCCCCCCCCCcccEEEcccccccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEeccccc
Q 000802 1 MASMSIQNVSNEKYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYA 80 (1278)
Q Consensus 1 ~~~~~~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~ 80 (1278)
||+|| |+++.|+||||+||||+|+|++|++||+++|.++||.||+|+ ++++|+.|.+++.+||++|+++|||||++||
T Consensus 1 ~~~~~-~~~~~~~~~vf~sfrg~d~r~~f~~hl~~~l~~~~i~~f~d~-~~~~g~~~~~~l~~~i~~s~~~ivv~s~~ya 78 (1153)
T PLN03210 1 MASSS-SSSRNWVYDVFPSFSGEDVRITFLSHFLKELDRKLIIAFKDN-EIERSQSLDPELKQAIRDSRIAVVVFSKNYA 78 (1153)
T ss_pred CCCCC-CCCCCCCCcEEeeCCCcccccCHHHHHHHHHHHCCCeEEccC-CccCCCcccHHHHHHHHhCeEEEEEecCCcc
Confidence 66655 555789999999999999999999999999999999999998 7999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhhcCCc-eEeEEEEeeccccccccchhhHHHHHHHHHhhhchHhHHHHHHHHHHHHhhcCCCccC
Q 000802 81 SSTWCLDELVKIVECKNRENQ-ILPIFYDVEPTVVRKQTVSFGEAFAKHVEAFRNNVEKVQKWRDALKVVANKSGWELKD 159 (1278)
Q Consensus 81 ~s~~c~~El~~~~~~~~~~~~-v~pv~~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~~ 159 (1278)
+|+||++||++|++|++.+++ |+||||+|||++||+|+|.||++|+++++. ...+++++||+||++||+++||++..
T Consensus 79 ~s~wcl~el~~i~~~~~~~~~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~--~~~~~~~~w~~al~~~~~~~g~~~~~ 156 (1153)
T PLN03210 79 SSSWCLNELLEIVRCKEELGQLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQN--KTEDEKIQWKQALTDVANILGYHSQN 156 (1153)
T ss_pred cchHHHHHHHHHHHhhhhcCceEEEEEecccHHHHhhccchHHHHHHHHhcc--cchhHHHHHHHHHHHHhCcCceecCC
Confidence 999999999999999999889 999999999999999999999999998764 35688999999999999999999976
Q ss_pred -Cccchhhhhhhhcccccccccc-CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc
Q 000802 160 -GNESEFIEAIVNVISSKIRTEL-KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 237 (1278)
Q Consensus 160 -~~e~~~i~~i~~~~~~~l~~~~-~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1278)
++|+++|++||++|..++...+ ...+++|||+.+++++..+|..+.+++++|+||||||+||||||+++|+++..+|+
T Consensus 157 ~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~ 236 (1153)
T PLN03210 157 WPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQ 236 (1153)
T ss_pred CCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCC
Confidence 8899999999999999998776 67789999999999999999877788999999999999999999999999999999
Q ss_pred ccEEeeec--hhh---cc-----cCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhhhh
Q 000802 238 GSSFLADV--REK---CD-----KEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDHLR 307 (1278)
Q Consensus 238 ~~~~~~~~--~~~---~~-----~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~ 307 (1278)
+.+|+.+. +.. .. .......++++++.+++...+..... ...++++++++|+||||||||+.++|+
T Consensus 237 g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~ 312 (1153)
T PLN03210 237 SSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLD 312 (1153)
T ss_pred eEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHH
Confidence 99988542 111 10 01113456777777776654433222 256788999999999999999999999
Q ss_pred HhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 308 SLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 308 ~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
.+.+...|+++||+||||||+++++..++++++|+|+.|+.+||++||+++||+...+++++.+++++|+++|+|+|||+
T Consensus 313 ~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl 392 (1153)
T PLN03210 313 ALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGL 392 (1153)
T ss_pred HHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHH
Confidence 99998889999999999999999998888889999999999999999999999988888889999999999999999999
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHhcCCChhHHHHHHhcccCCcH-HHHHHHHHhhcccCCCChHHHHHHHhhCCCChhHHH
Q 000802 388 KVLGSFLFGRAVHEWTSALERIKRDPEYEILSILQISFDGLKE-VEKKIFLDVVCFFKGRKRDYVSKILKSCDFDPVIGI 466 (1278)
Q Consensus 388 ~~lg~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~-~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~i 466 (1278)
+++|+.|++++..+|+.+++++++.++.+|..+|++||++|++ .+|.||+++||||++.+.+++..++..+++.+..++
T Consensus 393 ~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l 472 (1153)
T PLN03210 393 NVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGL 472 (1153)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhCh
Confidence 9999999999999999999999998888999999999999986 599999999999999999999999999999999999
Q ss_pred HHHHhccccceeCCCeEEecHHHHHHHHHHhhccCcCCCCCccCCCchhhHHHHhhhccCcceEEEEEEecccccccccc
Q 000802 467 AVLIEKSLLTVDGANRLWTHDLLQEMGRQIVRRQSLEEPGKRSRLWEEADICHVLSQNTGREAVEGIIVDHYYFLKDNVN 546 (1278)
Q Consensus 467 ~~L~~~~Li~~~~~~~~~mHdli~~~~~~i~~~~~~~~~~~~~~l~~~~d~~~~l~~~~~~~~~~~i~~~~~~~l~~~~~ 546 (1278)
+.|++++||++. .+++.|||++|+||++++++++ .+|++++++|..+|+++++..++|++.+++|.++... . ..
T Consensus 473 ~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~---~-~~ 546 (1153)
T PLN03210 473 KNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDE---I-DE 546 (1153)
T ss_pred HHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCc---c-ce
Confidence 999999999987 6789999999999999999987 7899999999999999999999999999999998765 2 35
Q ss_pred cccCchhhcCCCccceEEEcCc----------cCCCCcccCccCceEEEecCCCCCCCCcccccccchhhcccccccccc
Q 000802 547 LNASAKAFSQMTNLRLLKISNV----------QLPEGLGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIEEL 616 (1278)
Q Consensus 547 ~~~~~~~f~~~~~Lr~L~l~~~----------~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l 616 (1278)
..+...+|.+|++|++|++.++ ++|+++..++.+||+|+|.+++++.+|..|.+.+|++|+++++.+..+
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccccc
Confidence 6778889999999999999643 468889999999999999999999999999999999999999999999
Q ss_pred ccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCc
Q 000802 617 WTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSL 696 (1278)
Q Consensus 617 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L 696 (1278)
|.++..+++|+.|+|+++..+...|+++.+++|++|+|++|..+..+|.++..+++|+.|++++|..+..+|..+.+++|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL 706 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSL 706 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999998899999
Q ss_pred cEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCcc
Q 000802 697 KTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCS 776 (1278)
Q Consensus 697 ~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~ 776 (1278)
++|++++|..+..+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++... .++..+..+
T Consensus 707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l------------ 769 (1153)
T PLN03210 707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSE-KLWERVQPL------------ 769 (1153)
T ss_pred CEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchh-hcccccccc------------
Confidence 99999999988888865 356788888888888888765 4666776666554321 111000000
Q ss_pred CCccccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhh
Q 000802 777 KLKNFPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETL 856 (1278)
Q Consensus 777 ~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l 856 (1278)
.+.. ...+++|+.|+|++|..+..+|.++.++++|+.|+|++|..++.+|..+
T Consensus 770 ----~~~~-----------------------~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 770 ----TPLM-----------------------TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred ----chhh-----------------------hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 0000 1122344445555554444455555555555555555554444433322
Q ss_pred cCCCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCC
Q 000802 857 GQVESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCL 936 (1278)
Q Consensus 857 ~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l 936 (1278)
.+++|+.|++++| ...... +. ...+ ++.|+|++|.+
T Consensus 823 -~L~sL~~L~Ls~c-----------------------~~L~~~-----------------p~--~~~n-L~~L~Ls~n~i 858 (1153)
T PLN03210 823 -NLESLESLDLSGC-----------------------SRLRTF-----------------PD--ISTN-ISDLNLSRTGI 858 (1153)
T ss_pred -CccccCEEECCCC-----------------------Cccccc-----------------cc--cccc-cCEeECCCCCC
Confidence 2222222222222 111000 00 0012 26666666666
Q ss_pred CCCCcccccCCCCCCcEecCCCC-cCcccchhhcCCCCCCEeeccCCcCCCcCCC--CCCCCcEEEecCCcccccccccc
Q 000802 937 GEGAIPTDIGNLCLLKELCLSGN-NFVTLPASINSLLNLEELKLEDCKRLQSLPQ--LPPNVEKVRVNGCASLVTLLGAL 1013 (1278)
Q Consensus 937 ~~~~lp~~l~~l~sL~~L~L~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~--lp~sL~~L~i~~C~~L~~l~~~~ 1013 (1278)
.. +|..+..+++|+.|+|++| +++.+|..+..+++|+.|++++|..|..++- .|.++. .+.++. ...++.
T Consensus 859 ~~--iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~--~~~~n~-~~~~p~-- 931 (1153)
T PLN03210 859 EE--VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVA--MATDNI-HSKLPS-- 931 (1153)
T ss_pred cc--ChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhh--hhcccc-cccCCc--
Confidence 43 6767777777777777775 6667777777777777777777777765432 222211 111110 001111
Q ss_pred ccccccchhhccchhhhHHhhhhhhHHHHHHHHHhhcCCCCccceEEEeecCCCCCCCcccccCCcEEE-EEcCCCCcCC
Q 000802 1014 KLRKSDKTIIDCMDSLKLLRKNGLAISMLREYLEAVSAPSHKFHKFSIVVPGSEIPKWFIYQNEGSSIT-VTRPSYLYNM 1092 (1278)
Q Consensus 1014 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~~g~si~-~~lp~~~~~~ 1092 (1278)
.....+.+|..+.... +++. ......+++||.++|.||.||+.|++++ |.+|+.|. .
T Consensus 932 -~~~l~f~nC~~L~~~a--------------~l~~------~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~-~ 989 (1153)
T PLN03210 932 -TVCINFINCFNLDQEA--------------LLQQ------QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISP-C 989 (1153)
T ss_pred -hhccccccccCCCchh--------------hhcc------cccceEEECCCccCchhccCCcccceeeeeccCCccc-C
Confidence 1112345565443311 0110 1123357899999999999999999998 99999887 5
Q ss_pred CceeEEEEEEEEecCCCCccccccCCCCCcceEEEccCCCcceeEeeccccccccCCCeEEEEEeccCccc-----cc--
Q 000802 1093 NKVVGCAICCVFHVPKHSTGIRRRRHSDPTHELLSSMDGSSVSHFIDFREKFGHRGSDHLWLLYFPRQSSY-----YS-- 1165 (1278)
Q Consensus 1093 ~~~~g~~~c~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~l~y~~~~~~~-----~~-- 1165 (1278)
..+.||++|+|+.+...... .......+.|.+....+. ++. ...++|+|+.|.....-+ ..
T Consensus 990 ~~~~~f~~c~v~~~~~~~~~---~~~~~~~~~c~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~ 1057 (1153)
T PLN03210 990 QPFFRFRACAVVDSESFFII---SVSFDIQVCCRFIDRLGN--HFD-------SPYQPHVFSVTKKGSHLVIFDCCFPLN 1057 (1153)
T ss_pred CCccceEEEEEEecCccccC---CCceeEEEEEEEECCCCC--ccc-------cCCCceeEeeeccccceEEeccccccc
Confidence 67999999999976543211 112234455665443222 111 134566666655421000 00
Q ss_pred -----ccccccCcEEEEEEecccccccccCCCceeEeEeeeEEEEecccc
Q 000802 1166 -----MWHFESNHFKLSFIDARDKVGLAGSGTGLKVKRCGFHPVYMHEVE 1210 (1278)
Q Consensus 1166 -----~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~vk~cGv~lvy~~~~~ 1210 (1278)
......+|+.+.|... .....++||+|||+++|+.+.-
T Consensus 1058 ~~~~~~~~~~~~~~~~~f~~~-------~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1058 EDNAPLAELNYDHVDIQFRLT-------NKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ccccchhccCCceeeEEEEEe-------cCCCCeEEEeeeEEEeccCCCc
Confidence 1112245666666421 1123479999999999966543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-56 Score=555.16 Aligned_cols=306 Identities=31% Similarity=0.403 Sum_probs=266.0
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH---hhccccccEEeeechhhcccCCCHHHHHHHHHH
Q 000802 188 VGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL---ISHEFDGSSFLADVREKCDKEGSVISLQKQLLS 264 (1278)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~---~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1278)
||.+..++++.+.|..++. ++++|+||||+||||||+.++++ +.++|+..+|+. |++.+. ...++++++.
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~-VSk~f~----~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV-VSKEFT----TRKIQQTILE 233 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE-Eccccc----HHhHHHHHHH
Confidence 9999999999999976543 99999999999999999999973 678999999997 544333 8889999999
Q ss_pred HHhCCCCCC-ccchhhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhh-cCccceEe
Q 000802 265 DLLKLADNS-IRNVYDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKL-HRVRKVYK 342 (1278)
Q Consensus 265 ~l~~~~~~~-~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~-~~~~~~~~ 342 (1278)
.+....... .....+....+.+.|++||+||||||||+..+|+.+..+++....||+|++|||++.|+.. ++++..++
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~ 313 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIE 313 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcccc
Confidence 865533222 2234677889999999999999999999999999999999888889999999999999998 88888999
Q ss_pred cCCCCHHHHHHHHHHhhcCC-CCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcCC-CHHHHHHHHHHHhcC-----C--
Q 000802 343 LEALTYDEAFRLLCLKAFDT-HKPFEEYVELAESVVKYASGLPLALKVLGSFLFGR-AVHEWTSALERIKRD-----P-- 413 (1278)
Q Consensus 343 l~~L~~~ea~~Lf~~~af~~-~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-~~~~w~~~l~~l~~~-----~-- 413 (1278)
++.|+.+|||.||.+.+|.. ....+...++|++++++|+|+|||+.++|+.|+.| +.++|+.+.+.+... +
T Consensus 314 v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~ 393 (889)
T KOG4658|consen 314 VECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGM 393 (889)
T ss_pred ccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCch
Confidence 99999999999999999876 33345588999999999999999999999999985 577999999988764 1
Q ss_pred ChhHHHHHHhcccCCcHHHHHHHHHhhcccCCC--ChHHHHHHHhhCCCCh------------hHHHHHHHhccccceeC
Q 000802 414 EYEILSILQISFDGLKEVEKKIFLDVVCFFKGR--KRDYVSKILKSCDFDP------------VIGIAVLIEKSLLTVDG 479 (1278)
Q Consensus 414 ~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~------------~~~i~~L~~~~Li~~~~ 479 (1278)
...|..+|+.|||.||++.|.||+|||.||+++ +++.++..|.++||.. ...+..|++++|+....
T Consensus 394 ~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~ 473 (889)
T KOG4658|consen 394 EESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEER 473 (889)
T ss_pred hhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcc
Confidence 357899999999999999999999999999999 5788999999999652 35699999999998874
Q ss_pred C----CeEEecHHHHHHHHHHhhcc
Q 000802 480 A----NRLWTHDLLQEMGRQIVRRQ 500 (1278)
Q Consensus 480 ~----~~~~mHdli~~~~~~i~~~~ 500 (1278)
. ..+.|||++|+||..++.+.
T Consensus 474 ~~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 474 DEGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred cccceeEEEeeHHHHHHHHHHhccc
Confidence 2 68999999999999998854
No 3
>PLN03194 putative disease resistance protein; Provisional
Probab=100.00 E-value=3.9e-40 Score=323.02 Aligned_cols=157 Identities=28% Similarity=0.488 Sum_probs=143.0
Q ss_pred CCCCCCCcccEEEcccccccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEeccccccchhh
Q 000802 6 IQNVSNEKYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYASSTWC 85 (1278)
Q Consensus 6 ~~~~~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c 85 (1278)
|||++..+|||||||||+|+|++|++||+++|+++||+||+|++++++|+.|.++|.+||++|+++|||||++|++|+||
T Consensus 19 ~~~~~~~~yDVFISFrG~DtR~~FvshL~~aL~~~GI~vF~D~~el~~G~~i~~~L~~AIeeSri~IvVfS~~Ya~S~WC 98 (187)
T PLN03194 19 SSSSSAKPCDVFINHRGIDTKRTIATLLYDHLSRLNLRPFLDNKNMKPGDKLFDKINSAIRNCKVGVAVFSPRYCESYFC 98 (187)
T ss_pred cCCCCCCCCcEEEeCCCccccccHHHHHHHHHHHCCCEEEEcCccccCCCcHHHHHHHHHHhCeEEEEEECCCcccchhH
Confidence 45566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCceEeEEEEeeccccccc-cchhhHHHHHHHHHhhhchHhHHHHHHHHHHHHhhcCCCcc--CCcc
Q 000802 86 LDELVKIVECKNRENQILPIFYDVEPTVVRKQ-TVSFGEAFAKHVEAFRNNVEKVQKWRDALKVVANKSGWELK--DGNE 162 (1278)
Q Consensus 86 ~~El~~~~~~~~~~~~v~pv~~~v~p~~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g~~~~--~~~e 162 (1278)
++||++|+++... |+||||+|+|++||+| .|. ...+++++||+||++||+++||++. .++|
T Consensus 99 LdEL~~I~e~~~~---ViPIFY~VdPsdVr~q~~~~-------------~~~e~v~~Wr~AL~~va~l~G~~~~~~~~~e 162 (187)
T PLN03194 99 LHELALIMESKKR---VIPIFCDVKPSQLRVVDNGT-------------CPDEEIRRFNWALEEAKYTVGLTFDSLKGNW 162 (187)
T ss_pred HHHHHHHHHcCCE---EEEEEecCCHHHhhccccCC-------------CCHHHHHHHHHHHHHHhccccccCCCCCCCH
Confidence 9999999987432 9999999999999997 443 1357899999999999999999775 4789
Q ss_pred chhhhhhhhccccccc
Q 000802 163 SEFIEAIVNVISSKIR 178 (1278)
Q Consensus 163 ~~~i~~i~~~~~~~l~ 178 (1278)
+++|++|++.|.++|-
T Consensus 163 ~e~i~~iv~~v~k~l~ 178 (187)
T PLN03194 163 SEVVTMASDAVIKNLI 178 (187)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999977653
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.5e-37 Score=407.61 Aligned_cols=460 Identities=22% Similarity=0.228 Sum_probs=338.2
Q ss_pred chhhcCCCccceEEEcCccC----CCCcccCccCceEEEecCCCCCCCCcccccccchhhcccccccc-ccccccccccc
Q 000802 551 AKAFSQMTNLRLLKISNVQL----PEGLGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIE-ELWTGIKPLNM 625 (1278)
Q Consensus 551 ~~~f~~~~~Lr~L~l~~~~l----~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~-~l~~~~~~l~~ 625 (1278)
+..|.++++|++|++++|++ |..+.....+||+|++++|.+....+...+.+|++|++++|.+. .+|..++.+++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 56788999999999998764 45555344789999999988864333345788999999988886 57778888999
Q ss_pred cceecccCCcccccCC-CCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcc-cCCCccEEEeeC
Q 000802 626 LKVMKLSHSENLIKTP-NFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI-FMKSLKTLVLSG 703 (1278)
Q Consensus 626 L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~ 703 (1278)
|++|++++|......| .+.++++|++|+|++|.....+|..++.+++|++|++++|.....+|..+ .+++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 9999998887554444 58888899999999888877888888888889999888887666777766 688888888888
Q ss_pred CCCCCcCCcccCccccchhhcccCcccc-cccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCcccc
Q 000802 704 CLKLRKFPRVAGSMECLRELLLDETDIK-EIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFP 782 (1278)
Q Consensus 704 ~~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p 782 (1278)
|...+.+|..++++++|+.|++++|.+. .+|.++..+++|+.|++++|...+.+|..+..+++|+.|++++|...+.+|
T Consensus 246 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~ 325 (968)
T PLN00113 246 NNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIP 325 (968)
T ss_pred ceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCC
Confidence 8777778888888888888888888776 567777788888888888877777777777777777777777777777777
Q ss_pred ccccCCCCCCEEEccCCCCc-ccCccccCCCCCCEEeecCCCCCCcccccc------------------------cCCCC
Q 000802 783 QIVTSMEDLSELYLDGTSIT-EVPSSIELLTGLELLTLKGCKNLTRLSSSI------------------------NGLKS 837 (1278)
Q Consensus 783 ~~~~~~~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~------------------------~~l~s 837 (1278)
..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+ ..+++
T Consensus 326 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~ 405 (968)
T PLN00113 326 VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS 405 (968)
T ss_pred hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence 77777777777777777766 566666666677777766665544444444 44555
Q ss_pred CCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCCCc-cccccCCCceeecCCCCCCCCCC-------CcccCCCcc
Q 000802 838 LKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRPSP-NIFLMKNFKALSFCGCNGSPSST-------SWHLDVPFN 909 (1278)
Q Consensus 838 L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~~~l~~L~~L~l~~c~~~~~~~-------~~~l~l~~~ 909 (1278)
|+.|++++|.....+|..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|......+ +..++++.|
T Consensus 406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n 485 (968)
T PLN00113 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRN 485 (968)
T ss_pred CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCC
Confidence 5555555555554555555555556666666655554333 34456667777776665432221 234556666
Q ss_pred ccCCCCCCcccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCc-ccchhhcCCCCCCEeeccCCcCCCcC
Q 000802 910 LMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFV-TLPASINSLLNLEELKLEDCKRLQSL 988 (1278)
Q Consensus 910 ~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~l 988 (1278)
.+....+..+..++++ +.|+|++|.+ .+.+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|+....+
T Consensus 486 ~l~~~~~~~~~~l~~L-~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 563 (968)
T PLN00113 486 QFSGAVPRKLGSLSEL-MQLKLSENKL-SGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563 (968)
T ss_pred ccCCccChhhhhhhcc-CEEECcCCcc-eeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccC
Confidence 6655555566677777 8899998888 4668888888999999999999887 56888889999999999999888888
Q ss_pred CCC---CCCCcEEEecCCccccccccc
Q 000802 989 PQL---PPNVEKVRVNGCASLVTLLGA 1012 (1278)
Q Consensus 989 p~l---p~sL~~L~i~~C~~L~~l~~~ 1012 (1278)
|.. .++|+.|++++|+-...+|..
T Consensus 564 p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 564 PKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ChhHhcCcccCEEeccCCcceeeCCCc
Confidence 753 367889999998866666643
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.9e-35 Score=336.11 Aligned_cols=268 Identities=33% Similarity=0.488 Sum_probs=213.7
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH--hhccccccEEeeechhhcccCCCHHHHHHHHHHHHh
Q 000802 190 IESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL--ISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL 267 (1278)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~--~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1278)
||.++++|.+.|....++.++|+|+||||+||||||++++++ ++.+|+..+|+. +... .....++++++.++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~-~~~~----~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS-LSKN----PSLEQLLEQILRQLG 75 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE-EES-----SCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc-cccc----ccccccccccccccc
Confidence 789999999999876688999999999999999999999987 889998888876 3332 225777888888865
Q ss_pred CCCCC--CccchhhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhhcCc-cceEecC
Q 000802 268 KLADN--SIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKLHRV-RKVYKLE 344 (1278)
Q Consensus 268 ~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~-~~~~~l~ 344 (1278)
..... ...+..+....+++.|+++++||||||||+...|+.+...++.+..|++||||||+..++...+. ...++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELE 155 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECS
T ss_pred ccccccccccccccccccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 54221 44567778899999999999999999999999999888877777789999999999998876654 6789999
Q ss_pred CCCHHHHHHHHHHhhcCCC-CCChhHHHHHHHHHHHcCCCchHHHHHHhhhcC-CCHHHHHHHHHHHhcCC------Chh
Q 000802 345 ALTYDEAFRLLCLKAFDTH-KPFEEYVELAESVVKYASGLPLALKVLGSFLFG-RAVHEWTSALERIKRDP------EYE 416 (1278)
Q Consensus 345 ~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~-~~~~~w~~~l~~l~~~~------~~~ 416 (1278)
+|+.+||++||.+.++... ...+...+.+++|+++|+|+||||+++|++|+. .+..+|+.+++++.... ...
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~ 235 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRS 235 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999998765 233445678999999999999999999999954 25688999998876532 467
Q ss_pred HHHHHHhcccCCcHHHHHHHHHhhcccCCC--ChHHHHHHHhhCCCCh
Q 000802 417 ILSILQISFDGLKEVEKKIFLDVVCFFKGR--KRDYVSKILKSCDFDP 462 (1278)
Q Consensus 417 i~~~l~~sy~~L~~~~k~~fl~la~f~~~~--~~~~l~~~~~~~~~~~ 462 (1278)
+..++..||+.|+++.|+||+++|+||.+. +.+.++.+|.++|+..
T Consensus 236 ~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 236 VFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred ccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 999999999999999999999999999997 4889999999988754
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.2e-34 Score=385.12 Aligned_cols=441 Identities=19% Similarity=0.211 Sum_probs=296.9
Q ss_pred cCchhhcCCCccceEEEcCccCCCCcc-cCccCceEEEecCCCCC-CCCccc-ccccchhhcccccccc-cccccccccc
Q 000802 549 ASAKAFSQMTNLRLLKISNVQLPEGLG-YLSSKLRLLDWHGYPLK-SLPLNL-QLDKAVEFSMCYSCIE-ELWTGIKPLN 624 (1278)
Q Consensus 549 ~~~~~f~~~~~Lr~L~l~~~~l~~~~~-~l~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~l~~s~i~-~l~~~~~~l~ 624 (1278)
++...|.++++||+|++++|.+...+. ....+|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+.+++
T Consensus 109 ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~ 188 (968)
T PLN00113 109 IPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLT 188 (968)
T ss_pred CChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCc
Confidence 334445567777777776665422111 11245666666666554 344444 4556666666666543 4555556666
Q ss_pred ccceecccCCcccccCC-CCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcc-cCCCccEEEee
Q 000802 625 MLKVMKLSHSENLIKTP-NFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI-FMKSLKTLVLS 702 (1278)
Q Consensus 625 ~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~ 702 (1278)
+|++|++++|......| .+.++++|++|+|++|.....+|..++.+++|++|++++|.....+|..+ .+++|++|+++
T Consensus 189 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 268 (968)
T PLN00113 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268 (968)
T ss_pred CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc
Confidence 66666666555333322 35555555555555555555555555555555555555554434444433 34444455444
Q ss_pred ------------------------CCCCCCcCCcccCccccchhhcccCcccc-cccccccCCCCccEEEeeCCCCCCCc
Q 000802 703 ------------------------GCLKLRKFPRVAGSMECLRELLLDETDIK-EIPRSIGHLSGLVQLTLKGCQNLSSL 757 (1278)
Q Consensus 703 ------------------------~~~~~~~lp~~~~~l~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~~~~l~~l 757 (1278)
+|.....+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|...+.+
T Consensus 269 ~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 348 (968)
T PLN00113 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI 348 (968)
T ss_pred CCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence 44444444444445555555555555444 34444555555555555555555555
Q ss_pred ccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCc-ccCccccCCCCCCEEeecCCCCCCcccccccCCC
Q 000802 758 PVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSIT-EVPSSIELLTGLELLTLKGCKNLTRLSSSINGLK 836 (1278)
Q Consensus 758 p~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~ 836 (1278)
|..++.+++|+.|++++|...+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.....+|..+..++
T Consensus 349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 428 (968)
T PLN00113 349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP 428 (968)
T ss_pred ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC
Confidence 555555555555555555555555555555566666666666555 4566677888999999999887778888899999
Q ss_pred CCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCC--------CcccCCCc
Q 000802 837 SLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSST--------SWHLDVPF 908 (1278)
Q Consensus 837 sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~--------~~~l~l~~ 908 (1278)
+|+.|++++|.....++..+..+++|+.|++++|.+.+..+.....++|+.|++++|......+ +..++++.
T Consensus 429 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 429 LVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 9999999999998888888889999999999999999877777778999999999998654332 23466777
Q ss_pred cccCCCCCCcccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCc-ccchhhcCCCCCCEeeccCCcCCCc
Q 000802 909 NLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFV-TLPASINSLLNLEELKLEDCKRLQS 987 (1278)
Q Consensus 909 ~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l~~L~~L~L~~c~~L~~ 987 (1278)
|.+....+..+..+++| +.|+|++|.+ .+.+|..+..+++|+.|+|++|+++ .+|..+.++++|+.|++++|+..+.
T Consensus 509 N~l~~~~p~~~~~l~~L-~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~ 586 (968)
T PLN00113 509 NKLSGEIPDELSSCKKL-VSLDLSHNQL-SGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586 (968)
T ss_pred CcceeeCChHHcCccCC-CEEECCCCcc-cccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceee
Confidence 77766666677788888 9999999999 5779999999999999999999998 6899999999999999999999998
Q ss_pred CCCC
Q 000802 988 LPQL 991 (1278)
Q Consensus 988 lp~l 991 (1278)
+|..
T Consensus 587 ~p~~ 590 (968)
T PLN00113 587 LPST 590 (968)
T ss_pred CCCc
Confidence 8863
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.5e-30 Score=274.18 Aligned_cols=399 Identities=25% Similarity=0.307 Sum_probs=245.9
Q ss_pred ccceEEEcCccC---CCCcccCccCceEEEecCCCCCCCCccc-ccccchhhccccccccccccccccccccceecccCC
Q 000802 559 NLRLLKISNVQL---PEGLGYLSSKLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHS 634 (1278)
Q Consensus 559 ~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~ 634 (1278)
.|..|++++|.+ .+++..+ ..|.+|..+.+.+..+|..+ .+..++.++.+++++.++|+.+..+..|+.++.+++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 344455555532 3444444 35677777777777777766 677777888888888888888888888888888877
Q ss_pred cccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCc-ccCCCccEEEeeCCCCCCcCCcc
Q 000802 635 ENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGE-IFMKSLKTLVLSGCLKLRKFPRV 713 (1278)
Q Consensus 635 ~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~-~~l~~L~~L~L~~~~~~~~lp~~ 713 (1278)
+....+++++.+..|+.|+..+| .+..+|+.++++.+|..|++.++. ++.+|+. +.++.|++|+... ..++.+|+.
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~ 201 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNS-NLLETLPPE 201 (565)
T ss_pred ceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccch-hhhhcCChh
Confidence 76666777777777777777664 456677777777777777777743 4444443 3677777777665 356677777
Q ss_pred cCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccc-cCcccccccccCccCCccccccccCCCCCC
Q 000802 714 AGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTIS-SLKRLRNLELSGCSKLKNFPQIVTSMEDLS 792 (1278)
Q Consensus 714 ~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~-~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~ 792 (1278)
++.+..|..|++..|++..+| .|+.++.|+.|.+..|. .+.+|...+ .+++|.+|++..|. +++.|+.+.-+.+|+
T Consensus 202 lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhh
Confidence 777777777777777777766 55555555555555443 344444433 55555555555543 344555555555555
Q ss_pred EEEccCCCCcccCccccCCCCCCEEeecCCCC------------------------------------------------
Q 000802 793 ELYLDGTSITEVPSSIELLTGLELLTLKGCKN------------------------------------------------ 824 (1278)
Q Consensus 793 ~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~------------------------------------------------ 824 (1278)
.|++++|.++.+|.+++++ .|+.|-+.+|+.
T Consensus 279 rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 279 RLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 5555555555555555555 555555555431
Q ss_pred ----------------CCcccccccCC---CCCCEEEecCC-----------------------CCchhhhhhhcCCCCC
Q 000802 825 ----------------LTRLSSSINGL---KSLKTLNLSGC-----------------------SKLENVLETLGQVESS 862 (1278)
Q Consensus 825 ----------------l~~l~~~~~~l---~sL~~L~l~~c-----------------------~~l~~~~~~l~~l~~L 862 (1278)
++.+|.....- .-....++++| +...-+|..+..+++|
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL 437 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKL 437 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcc
Confidence 11111110000 00222333333 2233344455666777
Q ss_pred ceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCcc
Q 000802 863 EQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIP 942 (1278)
Q Consensus 863 ~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp 942 (1278)
..|++++|.+.++|..++.+..|+.|+++.|..... |.+...+..++.+-.++|++.. ++
T Consensus 438 t~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~l------------------P~~~y~lq~lEtllas~nqi~~--vd 497 (565)
T KOG0472|consen 438 TFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRML------------------PECLYELQTLETLLASNNQIGS--VD 497 (565)
T ss_pred eeeecccchhhhcchhhhhhhhhheecccccccccc------------------hHHHhhHHHHHHHHhccccccc--cC
Confidence 777777777777777777776777777666542111 3344444444666666676632 44
Q ss_pred c-ccCCCCCCcEecCCCCcCcccchhhcCCCCCCEeeccCCcCC
Q 000802 943 T-DIGNLCLLKELCLSGNNFVTLPASINSLLNLEELKLEDCKRL 985 (1278)
Q Consensus 943 ~-~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L 985 (1278)
. .+.++.+|..|+|.+|.+..+|+.++++++|++|+|.+|+.-
T Consensus 498 ~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 498 PSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 4 377788888888888888888888888888888888887643
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-27 Score=261.05 Aligned_cols=417 Identities=25% Similarity=0.250 Sum_probs=253.6
Q ss_pred ceEEEcCccCCCC-----cccCccCceEEEecCCCCCCCCcccccccchhhccccccccccccccccccccceecccCCc
Q 000802 561 RLLKISNVQLPEG-----LGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSE 635 (1278)
Q Consensus 561 r~L~l~~~~l~~~-----~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~ 635 (1278)
+.|+.++..++.- .+.++..-+.|++++|.+..+.. .++-++++|+.+++..|.
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~---------------------~~f~nl~nLq~v~l~~N~ 113 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDF---------------------EFFYNLPNLQEVNLNKNE 113 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcH---------------------HHHhcCCcceeeeeccch
Confidence 4455555554331 23344455555655555554443 334555555555555543
Q ss_pred ccccCCCCCCC-CCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcc--cCCCccEEEeeCCCCCCcCCc
Q 000802 636 NLIKTPNFTEV-PNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI--FMKSLKTLVLSGCLKLRKFPR 712 (1278)
Q Consensus 636 ~~~~~~~~~~l-~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~~~~~~~lp~ 712 (1278)
+..+|.++.. .+|+.|+|.+|.....-..++.-++.|+.|||+.| .+..+|..- .-.++++|+|++|.....-..
T Consensus 114 -Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 114 -LTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred -hhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccccccc
Confidence 3334444332 34666666555433333344555566666666653 344444333 235688888888766655556
Q ss_pred ccCccccchhhcccCcccccccc-cccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCC
Q 000802 713 VAGSMECLRELLLDETDIKEIPR-SIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDL 791 (1278)
Q Consensus 713 ~~~~l~~L~~L~L~~~~i~~lp~-~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L 791 (1278)
.+.++.+|..|.|+.|.++.+|. .+.+|++|+.|+|..|..-..--..+..|++|+.|.+..|....--...+..+.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 67778888888899999998886 45558899999888876443334456778888888888877666555667777888
Q ss_pred CEEEccCCCCcccCc-cccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCC
Q 000802 792 SELYLDGTSITEVPS-SIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGT 870 (1278)
Q Consensus 792 ~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n 870 (1278)
++|+|..|.+..+.. |+-.++.|+.|++++|..-..-+++....++|+.|+|++|....--+..+..+..|++|+|+.|
T Consensus 272 e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 272 EHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHN 351 (873)
T ss_pred ceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhccccc
Confidence 888888887776643 4666666777777666655444555555566666666665555544555555555566666555
Q ss_pred cccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCcc---cccCC
Q 000802 871 TIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIP---TDIGN 947 (1278)
Q Consensus 871 ~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp---~~l~~ 947 (1278)
.++.+-. ..+.++.+| ++|||++|.+. ..+. ..+..
T Consensus 352 si~~l~e---------------------------------------~af~~lssL-~~LdLr~N~ls-~~IEDaa~~f~g 390 (873)
T KOG4194|consen 352 SIDHLAE---------------------------------------GAFVGLSSL-HKLDLRSNELS-WCIEDAAVAFNG 390 (873)
T ss_pred chHHHHh---------------------------------------hHHHHhhhh-hhhcCcCCeEE-EEEecchhhhcc
Confidence 5543221 234445555 77777777652 2222 23677
Q ss_pred CCCCcEecCCCCcCcccch-hhcCCCCCCEeeccCCcCCCcCCCC--CCCCcEEEecCCccccccccccccccccchhhc
Q 000802 948 LCLLKELCLSGNNFVTLPA-SINSLLNLEELKLEDCKRLQSLPQL--PPNVEKVRVNGCASLVTLLGALKLRKSDKTIID 1024 (1278)
Q Consensus 948 l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~~L~~lp~l--p~sL~~L~i~~C~~L~~l~~~~~~~~~~~~~~~ 1024 (1278)
|++|+.|.|.||++.++|. .+..|..|++|+|.+|..-.-=|+. |-.|++|.+. +....|+
T Consensus 391 l~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~n----------------SssflCD 454 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMN----------------SSSFLCD 454 (873)
T ss_pred chhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhc----------------ccceEEe
Confidence 8999999999999998874 6788999999999988643322321 1233333221 1334566
Q ss_pred cchhhhHHhhhhhhHHHHHHHHHhhcCCCCccceEEEeecCCCCCCCccccc
Q 000802 1025 CMDSLKLLRKNGLAISMLREYLEAVSAPSHKFHKFSIVVPGSEIPKWFIYQN 1076 (1278)
Q Consensus 1025 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~q~ 1076 (1278)
| .++|+..|+..... . +.+.--...|+|+..|+
T Consensus 455 C------------ql~Wl~qWl~~~~l-----q--~sv~a~CayPe~Lad~~ 487 (873)
T KOG4194|consen 455 C------------QLKWLAQWLYRRKL-----Q--SSVIAKCAYPEPLADQS 487 (873)
T ss_pred c------------cHHHHHHHHHhccc-----c--cceeeeccCCcccccce
Confidence 6 35677777765411 1 23344567899998876
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=4.8e-28 Score=269.38 Aligned_cols=363 Identities=23% Similarity=0.286 Sum_probs=232.5
Q ss_pred cceEEEcCcc-----CCCCcccCccCceEEEecCCCCCCCCccc-ccccchhhccccccccccccccccccccceecccC
Q 000802 560 LRLLKISNVQ-----LPEGLGYLSSKLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSH 633 (1278)
Q Consensus 560 Lr~L~l~~~~-----l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~ 633 (1278)
.|-.++++|. +|.++..+ ..+++|.+....+..+|..+ .+.+|.+|++.+|++.++...+..|+.||.+.+.+
T Consensus 9 VrGvDfsgNDFsg~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 9 VRGVDFSGNDFSGDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred eecccccCCcCCCCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 3445555554 45555555 46888888888888888776 67778888888888887777777777888777777
Q ss_pred Cc--ccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCC
Q 000802 634 SE--NLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFP 711 (1278)
Q Consensus 634 ~~--~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp 711 (1278)
|. +...++++-.+..|..|+|++| .+.++|..+...+++..|+|++| ++.++|..
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~--------------------- 144 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYN-NIETIPNS--------------------- 144 (1255)
T ss_pred cccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccC-ccccCCch---------------------
Confidence 65 2223344555555555555553 34455555555555555555542 33334432
Q ss_pred cccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccC-CccccccccCCCC
Q 000802 712 RVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSK-LKNFPQIVTSMED 790 (1278)
Q Consensus 712 ~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~-l~~~p~~~~~~~~ 790 (1278)
.+.+++.|-.|+|++|.+..+|+.+..|.+|++|.|++|....---..+..+++|++|.+++... +..+|.++..+.+
T Consensus 145 -lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 145 -LFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred -HHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 23456666677777777777777777777777777777664321111223556666666666443 3456666666666
Q ss_pred CCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCC
Q 000802 791 LSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGT 870 (1278)
Q Consensus 791 L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n 870 (1278)
|..++++.|++..+|..+-++++|+.|+|++|. ++. +....+...+|++|+++.|
T Consensus 224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-ite------------------------L~~~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITE------------------------LNMTEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhccccccCCCcchHHHhhhhhhheeccCcCc-eee------------------------eeccHHHHhhhhhhccccc
Confidence 666666666666666665555555555555554 122 2223344455566666666
Q ss_pred cccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCcccccCCCCC
Q 000802 871 TIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCL 950 (1278)
Q Consensus 871 ~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~s 950 (1278)
+++.+|..+..++.|+.|...+|+.... .+ +..++.+..| +.+..++|.+ +.+|++++.+..
T Consensus 279 QLt~LP~avcKL~kL~kLy~n~NkL~Fe--------------Gi-PSGIGKL~~L-evf~aanN~L--ElVPEglcRC~k 340 (1255)
T KOG0444|consen 279 QLTVLPDAVCKLTKLTKLYANNNKLTFE--------------GI-PSGIGKLIQL-EVFHAANNKL--ELVPEGLCRCVK 340 (1255)
T ss_pred hhccchHHHhhhHHHHHHHhccCccccc--------------CC-ccchhhhhhh-HHHHhhcccc--ccCchhhhhhHH
Confidence 6666666666666666665555442211 11 1334455555 7777888877 459999999999
Q ss_pred CcEecCCCCcCcccchhhcCCCCCCEeeccCCcCCCcCCC
Q 000802 951 LKELCLSGNNFVTLPASINSLLNLEELKLEDCKRLQSLPQ 990 (1278)
Q Consensus 951 L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 990 (1278)
|+.|.|+.|.+.++|+.|.-|+-|+.|++..|++|.-=|.
T Consensus 341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred HHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCC
Confidence 9999999999999999999999999999999999975443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=1.4e-26 Score=257.79 Aligned_cols=337 Identities=26% Similarity=0.291 Sum_probs=247.3
Q ss_pred chhhcCCCccceEEEcCcc---CCCCcccCccCceEEEecCCCCCCCCccc-ccccchhhccccccccc--ccccccccc
Q 000802 551 AKAFSQMTNLRLLKISNVQ---LPEGLGYLSSKLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEE--LWTGIKPLN 624 (1278)
Q Consensus 551 ~~~f~~~~~Lr~L~l~~~~---l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~--l~~~~~~l~ 624 (1278)
+....+|+.++-|.+...+ +|+.+..+ .+|..|.+..|.+.++--.+ .+..|+.+.+++|+++. +|..+-.+.
T Consensus 25 P~~v~qMt~~~WLkLnrt~L~~vPeEL~~l-qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~ 103 (1255)
T KOG0444|consen 25 PHDVEQMTQMTWLKLNRTKLEQVPEELSRL-QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLK 103 (1255)
T ss_pred chhHHHhhheeEEEechhhhhhChHHHHHH-hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccc
Confidence 4456689999999998764 57777777 57999999999988776554 68899999999999875 799999999
Q ss_pred ccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcc-cccCCCceEEEccCCCCCCcCCCcc-cCCCccEEEee
Q 000802 625 MLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPS-LLLHNKLILLNLKGCTSLTTLPGEI-FMKSLKTLVLS 702 (1278)
Q Consensus 625 ~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~-l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~ 702 (1278)
.|.+||||+|+....+..+....|+-+|+|++|+ +..+|.+ +.++..|-+|||++ +.+..+|+.+ .+..|++|.|+
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls 181 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLS 181 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcC
Confidence 9999999999866666689999999999999964 6677755 56899999999998 5788888877 69999999999
Q ss_pred CCCCCCcCCcccCccccchhhcccCcccc--cccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCcc
Q 000802 703 GCLKLRKFPRVAGSMECLRELLLDETDIK--EIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKN 780 (1278)
Q Consensus 703 ~~~~~~~lp~~~~~l~~L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~ 780 (1278)
+|...----..+..|++|+.|.+++++-+ .+|.++..+.+|..++++.|. +..+|..+-++++|+.|+|++|... .
T Consensus 182 ~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-e 259 (1255)
T KOG0444|consen 182 NNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-E 259 (1255)
T ss_pred CChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-e
Confidence 98644322233446778888888887644 778888888888888887653 5667777777777777777776543 3
Q ss_pred ccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCC-CcccccccCCCCCCEEEecCCCCchhhhhhhcCC
Q 000802 781 FPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNL-TRLSSSINGLKSLKTLNLSGCSKLENVLETLGQV 859 (1278)
Q Consensus 781 ~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l-~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l 859 (1278)
+....+...+|++|+++.|.++.+|..+..+++|+.|.+.+|+.. ..+|+.++.|..|+.+...+| +++.+|+.+..|
T Consensus 260 L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcRC 338 (1255)
T KOG0444|consen 260 LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCRC 338 (1255)
T ss_pred eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhhh
Confidence 344444556677777777777777777777777777777666532 456666776666666666543 455666666666
Q ss_pred CCCceeecCCCcccCCCccccccCCCceeecCCC
Q 000802 860 ESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGC 893 (1278)
Q Consensus 860 ~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c 893 (1278)
..|+.|.|+.|.+..+|..+..++.|+.|++..|
T Consensus 339 ~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 339 VKLQKLKLDHNRLITLPEAIHLLPDLKVLDLREN 372 (1255)
T ss_pred HHHHHhcccccceeechhhhhhcCCcceeeccCC
Confidence 6666666666666555555554444444444443
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=1.9e-27 Score=253.54 Aligned_cols=398 Identities=24% Similarity=0.310 Sum_probs=308.8
Q ss_pred CceEEEecCCCCCCCCccc-ccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCC
Q 000802 580 KLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCT 658 (1278)
Q Consensus 580 ~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~ 658 (1278)
.+..|.++.|.+..+-.+. .+..|.+|++.++.+.++|..++.+..++.++.++++....++.+..+.+|..|+.+.+
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n- 124 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN- 124 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-
Confidence 4667788888888776665 78889999999999999999999999999999999998888888999999999999985
Q ss_pred CCCccCcccccCCCceEEEccCCCCCCcCCCcc-cCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccc
Q 000802 659 RLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI-FMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSI 737 (1278)
Q Consensus 659 ~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i 737 (1278)
.+.+++++++.+..|..|+..+ +.+.++|+.+ ++.+|..|++.++.. ..+|+..-+|+.|++|+...|.++.+|+.+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNSNLLETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence 5678899999999999999887 5677888877 788999999999654 455555555999999999999999999999
Q ss_pred cCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccc-cccCCCCCCEEEccCCCCcccCccccCCCCCCE
Q 000802 738 GHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQ-IVTSMEDLSELYLDGTSITEVPSSIELLTGLEL 816 (1278)
Q Consensus 738 ~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~-~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~ 816 (1278)
+.+.+|..|++..|+ +..+| .++.+..|++|+++.|.. +.+|. ...++++|..|++.+|+++++|..+..+.+|+.
T Consensus 203 g~l~~L~~LyL~~Nk-i~~lP-ef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 203 GGLESLELLYLRRNK-IRFLP-EFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLER 279 (565)
T ss_pred cchhhhHHHHhhhcc-cccCC-CCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhh
Confidence 999999999999986 55677 888999999999988764 44554 455899999999999999999999999999999
Q ss_pred EeecCCCCCCcccccccCCCCCCEEEecCCCCchh-----------hhh------------------------------h
Q 000802 817 LTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLEN-----------VLE------------------------------T 855 (1278)
Q Consensus 817 L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~-----------~~~------------------------------~ 855 (1278)
|++++|. ++.+|.+++++ .|+.|.+.||+.-+. +.. .
T Consensus 280 LDlSNN~-is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~ 357 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPD 357 (565)
T ss_pred hcccCCc-cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccc
Confidence 9999876 78899999999 999999999975321 000 0
Q ss_pred hcCCCCCceeecCCCcccCCCccccccC---CCceeecCCCCCCCCCCC--------cccCCCccccCCCCCCcccCCCC
Q 000802 856 LGQVESSEQLDKSGTTIKRPSPNIFLMK---NFKALSFCGCNGSPSSTS--------WHLDVPFNLMGKISCPAALMLPS 924 (1278)
Q Consensus 856 l~~l~~L~~L~L~~n~i~~~~~~~~~l~---~L~~L~l~~c~~~~~~~~--------~~l~l~~~~~~~~~~~~~~~l~~ 924 (1278)
...+-+.+.|++++-.++..|...+..- -....+++.|+..+.... ..+.+++|.++.. +..+..++.
T Consensus 358 ~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv-~~~l~~l~k 436 (565)
T KOG0472|consen 358 IYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV-PLELSQLQK 436 (565)
T ss_pred hhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc-hHHHHhhhc
Confidence 1123356677777777777666433222 255667777764332111 1133444444332 244566777
Q ss_pred CccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCcccchh------------------------hcCCCCCCEeecc
Q 000802 925 LSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFVTLPAS------------------------INSLLNLEELKLE 980 (1278)
Q Consensus 925 lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~------------------------i~~l~~L~~L~L~ 980 (1278)
+ ..|+|++|-+.+ +|..++.+..|+.|+|+.|+|..+|.+ ++++.+|..||+.
T Consensus 437 L-t~L~L~NN~Ln~--LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~ 513 (565)
T KOG0472|consen 437 L-TFLDLSNNLLND--LPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ 513 (565)
T ss_pred c-eeeecccchhhh--cchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence 7 889999988854 898899999999999999888866643 4566677777776
Q ss_pred CCcCCCcCCC
Q 000802 981 DCKRLQSLPQ 990 (1278)
Q Consensus 981 ~c~~L~~lp~ 990 (1278)
+| .++.+|.
T Consensus 514 nN-dlq~IPp 522 (565)
T KOG0472|consen 514 NN-DLQQIPP 522 (565)
T ss_pred CC-chhhCCh
Confidence 65 3555554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.1e-23 Score=274.10 Aligned_cols=310 Identities=31% Similarity=0.448 Sum_probs=203.8
Q ss_pred cceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCC
Q 000802 626 LKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCL 705 (1278)
Q Consensus 626 L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~ 705 (1278)
|+.|++.++.....+..+ ...+|++|++.+|. +..++..+..+++|+.|+|++|..++.+|....+++|++|+|++|.
T Consensus 591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~ 668 (1153)
T PLN03210 591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCS 668 (1153)
T ss_pred cEEEEecCCCCCCCCCcC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCC
Confidence 555555544322222222 34555555555542 4445555555555555555555555555543345555555555554
Q ss_pred CCCcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccc
Q 000802 706 KLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIV 785 (1278)
Q Consensus 706 ~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~ 785 (1278)
.+ ..+|..++++++|+.|++++|..++.+|..+ ++++|+.|++++|..++.+|..
T Consensus 669 ~L-----------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~- 723 (1153)
T PLN03210 669 SL-----------------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI- 723 (1153)
T ss_pred Cc-----------------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc-
Confidence 43 3455666777778888888888788887655 6788888888888887777754
Q ss_pred cCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCc------c-cccccCCCCCCEEEecCCCCchhhhhhhcC
Q 000802 786 TSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTR------L-SSSINGLKSLKTLNLSGCSKLENVLETLGQ 858 (1278)
Q Consensus 786 ~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~------l-~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~ 858 (1278)
..+|+.|++++|.+..+|..+ .+++|+.|.+.++..... + +.....+++|+.|++++|+.+..+|..+++
T Consensus 724 --~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 724 --STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred --cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 457888999999998888765 578888888876542211 1 111122356666666666666556655555
Q ss_pred CCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCC
Q 000802 859 VESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGE 938 (1278)
Q Consensus 859 l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~ 938 (1278)
+++|+.|++++ |...... |....+++| +.|+|++|...
T Consensus 801 L~~L~~L~Ls~-----------------------C~~L~~L-----------------P~~~~L~sL-~~L~Ls~c~~L- 838 (1153)
T PLN03210 801 LHKLEHLEIEN-----------------------CINLETL-----------------PTGINLESL-ESLDLSGCSRL- 838 (1153)
T ss_pred CCCCCEEECCC-----------------------CCCcCee-----------------CCCCCcccc-CEEECCCCCcc-
Confidence 55555555554 4332211 111245556 99999999763
Q ss_pred CCcccccCCCCCCcEecCCCCcCcccchhhcCCCCCCEeeccCCcCCCcCCCCC---CCCcEEEecCCccccccc
Q 000802 939 GAIPTDIGNLCLLKELCLSGNNFVTLPASINSLLNLEELKLEDCKRLQSLPQLP---PNVEKVRVNGCASLVTLL 1010 (1278)
Q Consensus 939 ~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp---~sL~~L~i~~C~~L~~l~ 1010 (1278)
..+|. ..++|+.|+|++|.++.+|.++..+++|+.|+|++|+.++.+|..+ ++|+.|++.+|++|+.++
T Consensus 839 ~~~p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 839 RTFPD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred ccccc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 23443 2468999999999999999999999999999999999999998754 567788999999998764
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=3.2e-24 Score=238.62 Aligned_cols=366 Identities=21% Similarity=0.198 Sum_probs=246.6
Q ss_pred cceEEEcCccCCC----CcccCccCceEEEecCCCCCCCCcccc-cccchhhccccccccccc-cccccccccceecccC
Q 000802 560 LRLLKISNVQLPE----GLGYLSSKLRLLDWHGYPLKSLPLNLQ-LDKAVEFSMCYSCIEELW-TGIKPLNMLKVMKLSH 633 (1278)
Q Consensus 560 Lr~L~l~~~~l~~----~~~~l~~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L~l~~s~i~~l~-~~~~~l~~L~~L~Ls~ 633 (1278)
-+.|++++|++.. .+..+ .+|+.+.+..|.+..+|.... ..+|+.|+|.+|.|..+- +.++-++.||.||||.
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl-~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNL-PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeeccccccccCcHHHHhcC-CcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 4558888887743 34444 478889999999999998764 456899999999988875 3488899999999998
Q ss_pred Ccc-cccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcc--cCCCccEEEeeCCCCCCcC
Q 000802 634 SEN-LIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI--FMKSLKTLVLSGCLKLRKF 710 (1278)
Q Consensus 634 ~~~-~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~~~~~~~l 710 (1278)
|.. .+..+.|..-.++++|+|.+|....--...+..+.+|..|.|+. +.++.+|... ++++|+.|+|..|..-..-
T Consensus 159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 873 33455788889999999999876665556788888999999988 4677787755 3888999888876543332
Q ss_pred CcccCccccchhhcccCccccccccc-ccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCC
Q 000802 711 PRVAGSMECLRELLLDETDIKEIPRS-IGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSME 789 (1278)
Q Consensus 711 p~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~ 789 (1278)
--.+..+++|+.|.+..|+|..+.++ +..+.++++|+|..|+....-..++-.|++|+.|+++.|.+...-++.....+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 34567788888888888888888754 56688888888888776555555667788888888888877777777777778
Q ss_pred CCCEEEccCCCCcccCcc-ccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCch---hhhhhhcCCCCCcee
Q 000802 790 DLSELYLDGTSITEVPSS-IELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLE---NVLETLGQVESSEQL 865 (1278)
Q Consensus 790 ~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~---~~~~~l~~l~~L~~L 865 (1278)
+|+.|+|+.|.++++++. +..+..|+.|+|+.|..-.--...+..+++|++|+|+.|...- .-...+..|++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 888888888888777653 5666666666666654211111223344445555444443321 112223334444444
Q ss_pred ecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCccccc
Q 000802 866 DKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDI 945 (1278)
Q Consensus 866 ~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l 945 (1278)
++.+|++... +...+.+++.| ++|||.+|.+. ..-|+.+
T Consensus 398 ~l~gNqlk~I---------------------------------------~krAfsgl~~L-E~LdL~~Naia-SIq~nAF 436 (873)
T KOG4194|consen 398 RLTGNQLKSI---------------------------------------PKRAFSGLEAL-EHLDLGDNAIA-SIQPNAF 436 (873)
T ss_pred eecCceeeec---------------------------------------chhhhccCccc-ceecCCCCcce-eeccccc
Confidence 4444433322 22456666666 77777777763 3345566
Q ss_pred CCCCCCcEecCC------CCcCcccchhhc
Q 000802 946 GNLCLLKELCLS------GNNFVTLPASIN 969 (1278)
Q Consensus 946 ~~l~sL~~L~L~------~n~l~~lp~~i~ 969 (1278)
..+ .|++|.+. +|.++.++.++.
T Consensus 437 e~m-~Lk~Lv~nSssflCDCql~Wl~qWl~ 465 (873)
T KOG4194|consen 437 EPM-ELKELVMNSSSFLCDCQLKWLAQWLY 465 (873)
T ss_pred ccc-hhhhhhhcccceEEeccHHHHHHHHH
Confidence 666 67766654 344555555543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.89 E-value=2e-25 Score=261.78 Aligned_cols=403 Identities=21% Similarity=0.242 Sum_probs=247.2
Q ss_pred chhhcCCCccceEEEcCccC---CCCcccCccCceEEEecCCCCCCCCccc-ccccchhhcccccccccccccccccccc
Q 000802 551 AKAFSQMTNLRLLKISNVQL---PEGLGYLSSKLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNML 626 (1278)
Q Consensus 551 ~~~f~~~~~Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L 626 (1278)
.++..+.-+|+.|+++++++ |..+..+ .+|+.|+++.|-+.++|... .+.+|++|.|.++.+..+|.++..+++|
T Consensus 38 l~~~~~~v~L~~l~lsnn~~~~fp~~it~l-~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl 116 (1081)
T KOG0618|consen 38 LEFVEKRVKLKSLDLSNNQISSFPIQITLL-SHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNL 116 (1081)
T ss_pred hHHhhheeeeEEeeccccccccCCchhhhH-HHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcc
Confidence 34444555599999999865 5555555 57999999999999999776 7899999999999999999999999999
Q ss_pred ceecccCCcccccCCCCCCCCCccEEEEcCC-------------------CCCCccCcccccCCCceEEEccCCCCC---
Q 000802 627 KVMKLSHSENLIKTPNFTEVPNLEELDLEGC-------------------TRLRDIHPSLLLHNKLILLNLKGCTSL--- 684 (1278)
Q Consensus 627 ~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c-------------------~~l~~l~~~l~~l~~L~~L~L~~~~~l--- 684 (1278)
++|+++.|.....+..+..+..++.+..++| .....++..+.++.. .|+|++|...
T Consensus 117 ~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~d 194 (1081)
T KOG0618|consen 117 QYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLD 194 (1081)
T ss_pred cccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhh
Confidence 9999999987666666666666666665555 333333333333333 3555554322
Q ss_pred -------CcCCCc--------ccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCCCCccEEEee
Q 000802 685 -------TTLPGE--------IFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLK 749 (1278)
Q Consensus 685 -------~~lp~~--------~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 749 (1278)
..+-.. +..++|+.|+.+.|......+ ...-.+|++++++.+.+..+|+|++.+.+|+.|.+.
T Consensus 195 ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 195 LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 111000 013344444444444432211 123346777777777777777777777777777777
Q ss_pred CCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCcccc-CCC-CCCEEeecCCCCCCc
Q 000802 750 GCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIE-LLT-GLELLTLKGCKNLTR 827 (1278)
Q Consensus 750 ~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~-~l~-~L~~L~L~~~~~l~~ 827 (1278)
.|.. ..+|..+...++|+.|.+..|. ++.+|...+.++.|++|+|..|++..+|..+- .+. +|..|+.+.++. ..
T Consensus 273 ~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l-~~ 349 (1081)
T KOG0618|consen 273 HNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKL-ST 349 (1081)
T ss_pred chhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccc-cc
Confidence 6654 5666666677777777766654 44566666667777777777777776666321 111 134444444332 22
Q ss_pred cc-ccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCC
Q 000802 828 LS-SSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDV 906 (1278)
Q Consensus 828 l~-~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l 906 (1278)
+| ..-..++.|+.|.+.+|.......+.+..+.+|+.|+|++|.+..++.+
T Consensus 350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas---------------------------- 401 (1081)
T KOG0618|consen 350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPAS---------------------------- 401 (1081)
T ss_pred cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHH----------------------------
Confidence 22 1122345566666666666655555556666666666666655544432
Q ss_pred CccccCCCCCCcccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCcccchhhcCCCCCCEeeccCCcCCC
Q 000802 907 PFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFVTLPASINSLLNLEELKLEDCKRLQ 986 (1278)
Q Consensus 907 ~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 986 (1278)
.+..+..| ++|+||+|.+.. +|+.+..++.|+.|...+|++..+| .+.+++.|+.+||+.|..-.
T Consensus 402 -----------~~~kle~L-eeL~LSGNkL~~--Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 402 -----------KLRKLEEL-EELNLSGNKLTT--LPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred -----------HHhchHHh-HHHhcccchhhh--hhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhh
Confidence 23344444 666666666644 6666666667777777666666666 66666777777776553221
Q ss_pred c-CCC-CC-CCCcEEEecCCc
Q 000802 987 S-LPQ-LP-PNVEKVRVNGCA 1004 (1278)
Q Consensus 987 ~-lp~-lp-~sL~~L~i~~C~ 1004 (1278)
- +|+ +| ++|++|+++|-+
T Consensus 467 ~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 467 VTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhCCCcccceeeccCCc
Confidence 1 232 45 667777666654
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1e-24 Score=255.86 Aligned_cols=428 Identities=21% Similarity=0.221 Sum_probs=325.3
Q ss_pred cceEEEcCccC---CCCcccCccCceEEEecCCCCCCCCccc-ccccchhhccccccccccccccccccccceecccCCc
Q 000802 560 LRLLKISNVQL---PEGLGYLSSKLRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSE 635 (1278)
Q Consensus 560 Lr~L~l~~~~l---~~~~~~l~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~ 635 (1278)
+..|.+..|.+ |-.+-.-.-+|+.|+++++.+..+|..+ .+.+|+.|+++.|.|+.+|.+..++++|++++|.++.
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~ 102 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNR 102 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccch
Confidence 55555555532 2222111234899999999999999877 6889999999999999999999999999999999888
Q ss_pred ccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccC
Q 000802 636 NLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAG 715 (1278)
Q Consensus 636 ~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~ 715 (1278)
....+..+..+.+|+.|++++|. ...+|.-+..+..+..+..++|..+..++.. .++.+++..+.....++..++
T Consensus 103 l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~ik~~~l~~n~l~~~~~~~i~ 177 (1081)
T KOG0618|consen 103 LQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQT----SIKKLDLRLNVLGGSFLIDIY 177 (1081)
T ss_pred hhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccc----cchhhhhhhhhcccchhcchh
Confidence 66666689999999999999864 5667888888888888888887555555543 278888888887788888888
Q ss_pred ccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEE
Q 000802 716 SMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELY 795 (1278)
Q Consensus 716 ~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~ 795 (1278)
.+++ .|+|++|.+. ...+..+++|+.|....+.... ..-..++|+.|..+.|......+. .-..+|+.++
T Consensus 178 ~l~~--~ldLr~N~~~--~~dls~~~~l~~l~c~rn~ls~----l~~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~d 247 (1081)
T KOG0618|consen 178 NLTH--QLDLRYNEME--VLDLSNLANLEVLHCERNQLSE----LEISGPSLTALYADHNPLTTLDVH--PVPLNLQYLD 247 (1081)
T ss_pred hhhe--eeecccchhh--hhhhhhccchhhhhhhhcccce----EEecCcchheeeeccCcceeeccc--cccccceeee
Confidence 7777 7899998887 3345666777777776654322 122457788888888887743332 2356789999
Q ss_pred ccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCC
Q 000802 796 LDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRP 875 (1278)
Q Consensus 796 L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~ 875 (1278)
++.+.+..+|+|+..+.+|+.|.+..|.. ..+|..+....+|+.|.+..|. ++.+|..++.+.+|++|+|..|.+...
T Consensus 248 is~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~N~L~~l 325 (1081)
T KOG0618|consen 248 ISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQSNNLPSL 325 (1081)
T ss_pred cchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehhcccccc
Confidence 99999999999999999999999888765 7788888888888888888764 456777788888999999999988888
Q ss_pred Ccccccc--CCCceeecCCCCCCCCCC--------CcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCccc-c
Q 000802 876 SPNIFLM--KNFKALSFCGCNGSPSST--------SWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPT-D 944 (1278)
Q Consensus 876 ~~~~~~l--~~L~~L~l~~c~~~~~~~--------~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~-~ 944 (1278)
+..+..- .+|..|..+.++...... +..+.+..|.+++-..|.+.++..| +.|+|++|.+.+ +|. .
T Consensus 326 p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL-KVLhLsyNrL~~--fpas~ 402 (1081)
T KOG0618|consen 326 PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL-KVLHLSYNRLNS--FPASK 402 (1081)
T ss_pred chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce-eeeeeccccccc--CCHHH
Confidence 7744322 124555555444322211 1235666777777777888899998 999999999844 776 4
Q ss_pred cCCCCCCcEecCCCCcCcccchhhcCCCCCCEeeccCCcCCCcCCCCC--CCCcEEEecCCcccccc
Q 000802 945 IGNLCLLKELCLSGNNFVTLPASINSLLNLEELKLEDCKRLQSLPQLP--PNVEKVRVNGCASLVTL 1009 (1278)
Q Consensus 945 l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~lp--~sL~~L~i~~C~~L~~l 1009 (1278)
+.+++.|++|+|+||+++.||.++..++.|++|...+| .+..+|++. +.|+.+|++ |..|..+
T Consensus 403 ~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS-~N~L~~~ 467 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLS-CNNLSEV 467 (1081)
T ss_pred HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecc-cchhhhh
Confidence 78899999999999999999999999999999999887 567788754 789999995 7777655
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=99.75 E-value=2.5e-19 Score=178.73 Aligned_cols=132 Identities=36% Similarity=0.617 Sum_probs=114.5
Q ss_pred EEEcccccccccchHHHHHHHHHhC--CCceeecCccccCCCCChHHHHHHHHhhceeeEEeccccccchhhHHHHHHHH
Q 000802 16 VFLSFRGEDTRKSFTNHLYAALKNK--GIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYASSTWCLDELVKIV 93 (1278)
Q Consensus 16 vFis~~~~d~~~~~~~~l~~~L~~~--g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~ 93 (1278)
|||||++.|.+..|+.+|..+|+++ |+++|++++++.+|..+.+++.++|++|+++|+|+|++|+.|.||+.|+..|+
T Consensus 1 vfisy~~~~d~~~~~~~L~~~Le~~~~g~~~c~~~rD~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~s~wc~~el~~a~ 80 (141)
T PF01582_consen 1 VFISYSGKDDREWFVSHLLPELEERPYGYKLCLDERDFLPGESILDNIQEAIERSRRTIVVLSRNYLSSEWCLFELQEAL 80 (141)
T ss_dssp EEEEE-GHHGHHHHHHCHHHHHHCTSSTS-EEEHHHCTSSSSCHHHHHHHHHHTEEEEEEEESHHHHHHTHHHHHHHHHH
T ss_pred cEEEeCCCCcHHHHHHHHHHHHHhCCCCeEEEEechhhcccccccchhhHhhhhceeeEEEeecccccccchhhhhhhhh
Confidence 8999999444788999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCC--c-eEeEEEEeeccccc-cccchhhHHHHHHHHHhhhc--hHhHHHHHHHHH
Q 000802 94 ECKNREN--Q-ILPIFYDVEPTVVR-KQTVSFGEAFAKHVEAFRNN--VEKVQKWRDALK 147 (1278)
Q Consensus 94 ~~~~~~~--~-v~pv~~~v~p~~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 147 (1278)
++....+ . |+|||++|.+++++ .+.+.|...+....+-.... ......|+.++.
T Consensus 81 ~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 81 ERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred hhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 9998866 4 99999999999999 79999988887765543332 467888988764
No 17
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=99.73 E-value=9.5e-18 Score=168.16 Aligned_cols=135 Identities=42% Similarity=0.744 Sum_probs=113.0
Q ss_pred cccEEEcccc-cccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEeccccccchhhHHHHHH
Q 000802 13 KYDVFLSFRG-EDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYASSTWCLDELVK 91 (1278)
Q Consensus 13 ~~dvFis~~~-~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~ 91 (1278)
.|||||||++ ++.++.|+.+|..+|...|+.+|.|++... |... .+|.++|++|+++|+|+|++|+.|.||..|+..
T Consensus 1 ~~dvFISys~~~~~~~~~v~~L~~~l~~~~~~v~~d~~~~~-~~~~-~~i~~~i~~s~~~i~vlS~~~~~S~w~~~E~~~ 78 (140)
T smart00255 1 EYDVFISYSGKEDVRNEFLSHLLEKLRGYGLCVFIDDFEPG-GGDL-EEIDEAIEKSRIAIVVLSPNYAESEWCLDELVA 78 (140)
T ss_pred CCeEEEECCCCHHHHHHHHHHHHHHhhcCCcEEEecCcccc-cchH-HHHHHHHHHCcEEEEEECcccccChhHHHHHHH
Confidence 4999999999 566779999999999999999999985433 3333 399999999999999999999999999999999
Q ss_pred HHHhhhc-CCc-eEeEEEEeeccccccccchhhHHHHHHHHHhhhchHhHHHHHHHHHHHH
Q 000802 92 IVECKNR-ENQ-ILPIFYDVEPTVVRKQTVSFGEAFAKHVEAFRNNVEKVQKWRDALKVVA 150 (1278)
Q Consensus 92 ~~~~~~~-~~~-v~pv~~~v~p~~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~ 150 (1278)
++++... ... ||||+++..|+.+..+.+.++.++.....++.....+ ..|+.++..++
T Consensus 79 a~~~~~~~~~~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~ 138 (140)
T smart00255 79 ALENALEEGGLRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVP 138 (140)
T ss_pred HHHHHHHcCCCeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhc
Confidence 9988765 334 9999999999999999999999998875555443333 68998887764
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.65 E-value=1e-15 Score=188.12 Aligned_cols=258 Identities=24% Similarity=0.273 Sum_probs=128.4
Q ss_pred cEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcc
Q 000802 650 EELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETD 729 (1278)
Q Consensus 650 ~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~ 729 (1278)
..|+++++ .+..+|+.+. .+|+.|++.+| .++.+|.. +++|++|++++| .+..+|.. .++|+.|++.+|.
T Consensus 204 ~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 204 AVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred cEEEcCCC-CCCcCCcchh--cCCCEEEccCC-cCCCCCCC--CCCCcEEEecCC-ccCcccCc---ccccceeeccCCc
Confidence 34455554 3334554443 24555555553 34445542 355666666554 33344432 2345555666665
Q ss_pred cccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCcccc
Q 000802 730 IKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIE 809 (1278)
Q Consensus 730 i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~ 809 (1278)
+..+|.. +.+|+.|++++|. +..+|.. +++|+.|++++|... .+|.. ..+|+.|++++|.+..+|..
T Consensus 274 L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~---p~~L~~LdLS~N~L~-~Lp~l---p~~L~~L~Ls~N~L~~LP~l-- 340 (788)
T PRK15387 274 LTHLPAL---PSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLA-SLPAL---PSELCKLWAYNNQLTSLPTL-- 340 (788)
T ss_pred hhhhhhc---hhhcCEEECcCCc-ccccccc---ccccceeECCCCccc-cCCCC---cccccccccccCcccccccc--
Confidence 5555542 2345555555553 2333321 244555555554322 23321 22344555555555555431
Q ss_pred CCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCCCccccccCCCceee
Q 000802 810 LLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRPSPNIFLMKNFKALS 889 (1278)
Q Consensus 810 ~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~ 889 (1278)
..+|+.|+|++|. +..+|.. .++|+.|++++|... .+|.. ..+|+.|++++|.+.+++..
T Consensus 341 -p~~Lq~LdLS~N~-Ls~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l----------- 400 (788)
T PRK15387 341 -PSGLQELSVSDNQ-LASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL----------- 400 (788)
T ss_pred -ccccceEecCCCc-cCCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc-----------
Confidence 1345555555443 2233321 223444444443322 22221 12344444444444332210
Q ss_pred cCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCcccchhhc
Q 000802 890 FCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFVTLPASIN 969 (1278)
Q Consensus 890 l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~ 969 (1278)
... |+.|+|++|.+.. +|.. ..+|+.|++++|+++.+|..+.
T Consensus 401 --------------------------------~s~-L~~LdLS~N~Lss--IP~l---~~~L~~L~Ls~NqLt~LP~sl~ 442 (788)
T PRK15387 401 --------------------------------PSE-LKELMVSGNRLTS--LPML---PSGLLSLSVYRNQLTRLPESLI 442 (788)
T ss_pred --------------------------------ccC-CCEEEccCCcCCC--CCcc---hhhhhhhhhccCcccccChHHh
Confidence 112 3777888887743 6643 3467778888888888888888
Q ss_pred CCCCCCEeeccCCcCCCcC
Q 000802 970 SLLNLEELKLEDCKRLQSL 988 (1278)
Q Consensus 970 ~l~~L~~L~L~~c~~L~~l 988 (1278)
++++|+.|+|++|+.-...
T Consensus 443 ~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 443 HLSSETTVNLEGNPLSERT 461 (788)
T ss_pred hccCCCeEECCCCCCCchH
Confidence 8888888888888755443
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.61 E-value=4.6e-15 Score=182.43 Aligned_cols=258 Identities=22% Similarity=0.261 Sum_probs=148.6
Q ss_pred ceEEEecCCCCCCCCcccccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCC
Q 000802 581 LRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRL 660 (1278)
Q Consensus 581 Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l 660 (1278)
-..|+++.+.+.++|..+. .+|..|++.+|+++.+|.. +++|++|++++|... ..|.+ .++|++|++++|. +
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-L 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-h
Confidence 3455666666666665442 3566666666666666542 356667777666422 33322 3566777777654 3
Q ss_pred CccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCC
Q 000802 661 RDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHL 740 (1278)
Q Consensus 661 ~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 740 (1278)
..+|.. ..+|+.|++++| .++.+|. .+++|+.|++++|. +..+|... .+|+.|.+++|.++.+|.. .
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p 341 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQLTSLPTL---P 341 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCCc-cccCCCCc---ccccccccccCcccccccc---c
Confidence 444432 245666777764 4556665 24667777777763 33455432 3466677777777776642 2
Q ss_pred CCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEeec
Q 000802 741 SGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLTLK 820 (1278)
Q Consensus 741 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~ 820 (1278)
.+|+.|+|++|.. ..+|.. ..+|+.|++++|... .+|.. +.+|+.|++++|.+..+|.. .++|+.|+++
T Consensus 342 ~~Lq~LdLS~N~L-s~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS 410 (788)
T PRK15387 342 SGLQELSVSDNQL-ASLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVS 410 (788)
T ss_pred cccceEecCCCcc-CCCCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccCCCCc---ccCCCEEEcc
Confidence 4677777777653 345532 245666666665433 34543 24567777777777766643 2456677777
Q ss_pred CCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCC
Q 000802 821 GCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRP 875 (1278)
Q Consensus 821 ~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~ 875 (1278)
+|. +..+|.. +.+|+.|++++|... .+|..+..+++|+.|++++|.+++.
T Consensus 411 ~N~-LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 411 GNR-LTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CCc-CCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCch
Confidence 765 3445542 235566666665543 5566666666666666666666543
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.55 E-value=9.6e-15 Score=181.18 Aligned_cols=94 Identities=27% Similarity=0.346 Sum_probs=50.1
Q ss_pred CccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccC
Q 000802 648 NLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDE 727 (1278)
Q Consensus 648 ~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~ 727 (1278)
+...|+++++ .+..+|..+. +.|+.|+|++| .++.+|..+ .++|++|++++|. +..+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~l-~~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPENL-QGNIKTLYANSNQ-LTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCChhh-ccCCCEEECCCCc-cccCChhhh--ccccEEECcC
Confidence 4566777664 3455565442 45667777664 455666544 2466666666543 334454332 2455555555
Q ss_pred cccccccccccCCCCccEEEeeCC
Q 000802 728 TDIKEIPRSIGHLSGLVQLTLKGC 751 (1278)
Q Consensus 728 ~~i~~lp~~i~~l~~L~~L~L~~~ 751 (1278)
|.+..+|..+. ++|+.|++++|
T Consensus 251 N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 251 NRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CccCcCChhHh--CCCCEEECcCC
Confidence 55555554432 34555555443
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=4.1e-14 Score=175.61 Aligned_cols=200 Identities=16% Similarity=0.285 Sum_probs=109.2
Q ss_pred cchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCC
Q 000802 602 KAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGC 681 (1278)
Q Consensus 602 ~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~ 681 (1278)
+|+.|++++|.+..+|..+. .+|+.|++++|.. ..+|. .-.++|+.|+|++|. +..+|..+. .+|+.|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCCh-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCC
Confidence 34444444444444443332 2455555555432 12221 012356666666654 335555443 46777777753
Q ss_pred CCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCccccc
Q 000802 682 TSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTI 761 (1278)
Q Consensus 682 ~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l 761 (1278)
.+..+|..+ .++|++|++++|. +..+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.. ..+|..+
T Consensus 273 -~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L-t~LP~~l 344 (754)
T PRK15370 273 -KISCLPENL-PEELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENAL-TSLPASL 344 (754)
T ss_pred -ccCcccccc-CCCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcc-ccCChhh
Confidence 555666644 3577888887764 445554432 467888888888887776543 5777777777653 3455443
Q ss_pred ccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCC
Q 000802 762 SSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCK 823 (1278)
Q Consensus 762 ~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~ 823 (1278)
. ++|+.|++++|.. ..+|..+ .++|+.|++++|.+..+|..+. ..|+.|++++|.
T Consensus 345 ~--~sL~~L~Ls~N~L-~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~ 399 (754)
T PRK15370 345 P--PELQVLDVSKNQI-TVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN 399 (754)
T ss_pred c--CcccEEECCCCCC-CcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC
Confidence 2 4566666666543 2344333 2456666666666665555432 245555555543
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.51 E-value=1.1e-15 Score=164.52 Aligned_cols=90 Identities=29% Similarity=0.282 Sum_probs=76.8
Q ss_pred ccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCcc-ccCCCCCCEEeecCCCCCCcccccccCCCCC
Q 000802 760 TISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPSS-IELLTGLELLTLKGCKNLTRLSSSINGLKSL 838 (1278)
Q Consensus 760 ~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL 838 (1278)
.+..+++|++|+|++|.....-+.++.....+++|.|..|++..+... +..+..|+.|+|.+|+.....|-.+..+.+|
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL 348 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee
Confidence 377899999999999988888888899999999999999999877654 7888999999999998777778888888999
Q ss_pred CEEEecCCCCc
Q 000802 839 KTLNLSGCSKL 849 (1278)
Q Consensus 839 ~~L~l~~c~~l 849 (1278)
.+|.+-.|+..
T Consensus 349 ~~l~l~~Np~~ 359 (498)
T KOG4237|consen 349 STLNLLSNPFN 359 (498)
T ss_pred eeeehccCccc
Confidence 99998877654
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=1.2e-15 Score=164.12 Aligned_cols=285 Identities=20% Similarity=0.182 Sum_probs=142.5
Q ss_pred EecCCCCCCCCcccccccchhhccccccccccccc-cccccccceecccCCcccccCC-CCCCCCCccEEEEcCCCCCCc
Q 000802 585 DWHGYPLKSLPLNLQLDKAVEFSMCYSCIEELWTG-IKPLNMLKVMKLSHSENLIKTP-NFTEVPNLEELDLEGCTRLRD 662 (1278)
Q Consensus 585 ~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~ 662 (1278)
+.++-.+.++|.++ +..-+.+.|..|+|+.+|.+ ++.+++||.|||++|......| .|.+++.|-.|.+.+++.++.
T Consensus 52 dCr~~GL~eVP~~L-P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 52 DCRGKGLTEVPANL-PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred EccCCCcccCcccC-CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh
Confidence 44555566666655 44566677777777777765 8889999999999887544444 688888888888888777777
Q ss_pred cCc-ccccCCCceEEEccCCCCCCcCCCcc--cCCCccEEEeeCCCCCCcCCc-ccCccccchhhcccCcccc---c---
Q 000802 663 IHP-SLLLHNKLILLNLKGCTSLTTLPGEI--FMKSLKTLVLSGCLKLRKFPR-VAGSMECLRELLLDETDIK---E--- 732 (1278)
Q Consensus 663 l~~-~l~~l~~L~~L~L~~~~~l~~lp~~~--~l~~L~~L~L~~~~~~~~lp~-~~~~l~~L~~L~L~~~~i~---~--- 732 (1278)
+|. .++.|..|+.|.+.-|. +..++... .+++|..|.+.+|. ...++. .+..+..++.+.+..|.+- .
T Consensus 131 l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~w 208 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPW 208 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccccccch
Confidence 774 45566666666655432 22222221 24444444444432 222222 3444444444444444311 0
Q ss_pred -------ccccccCCCCccEEEeeCCCCCCCccccc-ccCcccccccccCccCCcccc-ccccCCCCCCEEEccCCCCcc
Q 000802 733 -------IPRSIGHLSGLVQLTLKGCQNLSSLPVTI-SSLKRLRNLELSGCSKLKNFP-QIVTSMEDLSELYLDGTSITE 803 (1278)
Q Consensus 733 -------lp~~i~~l~~L~~L~L~~~~~l~~lp~~l-~~l~~L~~L~L~~~~~l~~~p-~~~~~~~~L~~L~L~~~~l~~ 803 (1278)
.|..++.........+.+.+.-..-+..+ ..+.++.+--.+.|......| ..+..+++|++|+|++|+++.
T Consensus 209 la~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~ 288 (498)
T KOG4237|consen 209 LADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR 288 (498)
T ss_pred hhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch
Confidence 01111111111111111000000000000 001111111111121111122 335566666666666666665
Q ss_pred cC-ccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeecCCCcc
Q 000802 804 VP-SSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTI 872 (1278)
Q Consensus 804 lp-~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i 872 (1278)
+. .++..+..++.|.|..|+.-..-...+.++..|+.|+|++|+.....|..+..+.+|.+|++-.|.+
T Consensus 289 i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 289 IEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 43 3466666666666666553222223345566666666666666555566666666666666655544
No 24
>PF13676 TIR_2: TIR domain; PDB: 3H16_B 3UB4_A 2Y92_A 3UB3_A 3UB2_A.
Probab=99.43 E-value=6.3e-14 Score=131.55 Aligned_cols=86 Identities=34% Similarity=0.593 Sum_probs=74.5
Q ss_pred EEEcccccccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEeccccccchhhHHHHHHHHHh
Q 000802 16 VFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYASSTWCLDELVKIVEC 95 (1278)
Q Consensus 16 vFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~ 95 (1278)
|||||+++|. .|+.+|++.|++.|+++|+|. ++.+|+.+..++.++|++|+.+|+++|++|..|.||..|+..+.+
T Consensus 1 VFIS~~~~D~--~~a~~l~~~L~~~g~~v~~d~-~~~~g~~~~~~i~~~i~~s~~~i~~~S~~~~~s~~~~~E~~~a~~- 76 (102)
T PF13676_consen 1 VFISYSSEDR--EFAERLAERLESAGIRVFLDR-DIPPGEDWREEIERAIERSDCVIVLLSPNYLKSPWCRFELGAAWK- 76 (102)
T ss_dssp EEEEEEGGGC--CCHHHHHHHHHHTT--EE-GG-EE-TTS-HHCCCHHCCTTEEEEEEEEEHHHHCTHHHHHHHHHHHC-
T ss_pred eEEEecCCcH--HHHHHHHHHHhhcCCEEEEEE-eCCCCCCHHHHHHHHHHhCCEEEEEECcccccChHHHHHHHHHHH-
Confidence 8999999996 799999999999999999997 999999999999999999999999999999999999999999843
Q ss_pred hhcCCc-eEeEEEE
Q 000802 96 KNRENQ-ILPIFYD 108 (1278)
Q Consensus 96 ~~~~~~-v~pv~~~ 108 (1278)
.+. |+||.++
T Consensus 77 ---~~~~iipv~~~ 87 (102)
T PF13676_consen 77 ---RGKPIIPVRLD 87 (102)
T ss_dssp ---TSESEEEEECS
T ss_pred ---CCCEEEEEEEC
Confidence 344 9999844
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=8.1e-14 Score=161.40 Aligned_cols=57 Identities=28% Similarity=0.235 Sum_probs=31.6
Q ss_pred cEEEecCCCCCC---CCcccccCCCCCCcEecCCCCcCcc-----cchhhcCC-CCCCEeeccCCc
Q 000802 927 EKLDLSDCCLGE---GAIPTDIGNLCLLKELCLSGNNFVT-----LPASINSL-LNLEELKLEDCK 983 (1278)
Q Consensus 927 ~~L~Ls~~~l~~---~~lp~~l~~l~sL~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L~~c~ 983 (1278)
+.|++++|.+++ ..+...+..+++|+.|++++|.+.. +...+... +.|+.|++.+++
T Consensus 253 ~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred eEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 667777666632 1223344455667777777776662 22333334 566666666653
No 26
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.36 E-value=3e-14 Score=135.86 Aligned_cols=160 Identities=29% Similarity=0.408 Sum_probs=123.0
Q ss_pred CCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCccccccc
Q 000802 684 LTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISS 763 (1278)
Q Consensus 684 l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~ 763 (1278)
...+|..+.+.+...|.|+.| .+..+|..+..+.+|+.|++.+|+++++|.+++.+++|+.|++.-|+ +..+|..+|.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCC
Confidence 445666667777788888874 56677778888899999999999999999999999999999988654 6778888999
Q ss_pred CcccccccccCccCCc-cccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEE
Q 000802 764 LKRLRNLELSGCSKLK-NFPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLN 842 (1278)
Q Consensus 764 l~~L~~L~L~~~~~l~-~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~ 842 (1278)
+|.|+.|++.+|...+ .+|..+-.+..|+.|+|++|.++.+|..++.+++|+.|.+.+|.. -++|..++.+..|+.|+
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelh 179 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELH 179 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHh
Confidence 9999999998876553 577777788888888999999888888888888888888887753 23444444444444444
Q ss_pred ecCC
Q 000802 843 LSGC 846 (1278)
Q Consensus 843 l~~c 846 (1278)
+.+|
T Consensus 180 iqgn 183 (264)
T KOG0617|consen 180 IQGN 183 (264)
T ss_pred cccc
Confidence 4443
No 27
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.34 E-value=7.6e-11 Score=156.78 Aligned_cols=293 Identities=14% Similarity=0.142 Sum_probs=182.4
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
.+..+|-|..-++.+.. ....+++.|.|++|.||||++..+.+.. ..+.|+. +.... .+.......+
T Consensus 12 ~~~~~~~R~rl~~~l~~-----~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f~~~l 78 (903)
T PRK04841 12 RLHNTVVRERLLAKLSG-----ANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERFASYL 78 (903)
T ss_pred CccccCcchHHHHHHhc-----ccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHHHHHH
Confidence 45578888876666543 2467899999999999999999988532 3566774 44322 1233344444
Q ss_pred HHHHhCCCCC------------CccchhhhHHHHHHHHc--CCCceEEEeCCCChh------hhhHhhcCCCCCCCCcEE
Q 000802 263 LSDLLKLADN------------SIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPD------HLRSLVGEPDWFGPGSQI 322 (1278)
Q Consensus 263 l~~l~~~~~~------------~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~I 322 (1278)
+..+...... ...+.......+...+. +.+++|||||+...+ .+..+... ..++.++
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~---~~~~~~l 155 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH---QPENLTL 155 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh---CCCCeEE
Confidence 4443211110 00111222233333333 679999999997753 23444433 2467789
Q ss_pred EEEeCChhhhhh---cCccceEecC----CCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhc
Q 000802 323 IITTRNEHLLKL---HRVRKVYKLE----ALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLF 395 (1278)
Q Consensus 323 IiTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~ 395 (1278)
|||||....... .......++. +|+.+|+.++|.......- . .+.+.++.+.++|+|+++..++..+.
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~--~---~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI--E---AAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC--C---HHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 999998432211 1122345566 9999999999976653221 1 24577899999999999999987775
Q ss_pred CCCHHHHHHHHHHHhcCCChhHHHHHHhc-ccCCcHHHHHHHHHhhcccCCCChHHHHHHHhhCCCChhHHHHHHHhccc
Q 000802 396 GRAVHEWTSALERIKRDPEYEILSILQIS-FDGLKEVEKKIFLDVVCFFKGRKRDYVSKILKSCDFDPVIGIAVLIEKSL 474 (1278)
Q Consensus 396 ~~~~~~w~~~l~~l~~~~~~~i~~~l~~s-y~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~~L 474 (1278)
+.... .......+...+...+...+.-. ++.||+..++.++.+|+++ ..+.+.+..+.. .-+....+..|.+.++
T Consensus 231 ~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l 306 (903)
T PRK04841 231 QNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGL 306 (903)
T ss_pred hCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCC
Confidence 43210 01111222222234465554433 7899999999999999986 555555555543 2235677899999999
Q ss_pred ccee-C--CCeEEecHHHHHHHHHHhhcc
Q 000802 475 LTVD-G--ANRLWTHDLLQEMGRQIVRRQ 500 (1278)
Q Consensus 475 i~~~-~--~~~~~mHdli~~~~~~i~~~~ 500 (1278)
+... + ..++.+|++++++.+.....+
T Consensus 307 ~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 307 FIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred eeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 6532 2 247889999999998876443
No 28
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.31 E-value=2.7e-13 Score=129.43 Aligned_cols=157 Identities=27% Similarity=0.376 Sum_probs=96.2
Q ss_pred CCcccccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCc
Q 000802 594 LPLNLQLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKL 673 (1278)
Q Consensus 594 lp~~~~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L 673 (1278)
+|-.|.+.+...|.+++|++..+|..+..+.+|++|++++|.. .++|.++..+++|
T Consensus 26 ~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi------------------------e~lp~~issl~kl 81 (264)
T KOG0617|consen 26 LPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI------------------------EELPTSISSLPKL 81 (264)
T ss_pred cccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh------------------------hhcChhhhhchhh
Confidence 3444445555555555555555555555555555555554443 3344444444444
Q ss_pred eEEEccCCCCCCcCCCcc-cCCCccEEEeeCCCCC-CcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCC
Q 000802 674 ILLNLKGCTSLTTLPGEI-FMKSLKTLVLSGCLKL-RKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGC 751 (1278)
Q Consensus 674 ~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~ 751 (1278)
++|+++. +.+..+|..+ .++.|+.|+|..|... ..+|..+..|+.|+.|+++.|+++-+|..++++++|+.|.+++|
T Consensus 82 r~lnvgm-nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 82 RILNVGM-NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred hheecch-hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC
Confidence 4444443 2344444444 3455555555444332 35666677788899999999999999999999999999999887
Q ss_pred CCCCCcccccccCcccccccccCcc
Q 000802 752 QNLSSLPVTISSLKRLRNLELSGCS 776 (1278)
Q Consensus 752 ~~l~~lp~~l~~l~~L~~L~L~~~~ 776 (1278)
. +-++|..++.++.|++|++.+|.
T Consensus 161 d-ll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 161 D-LLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred c-hhhCcHHHHHHHHHHHHhcccce
Confidence 6 44567777777777777766654
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.24 E-value=1e-12 Score=152.23 Aligned_cols=153 Identities=20% Similarity=0.209 Sum_probs=78.2
Q ss_pred CCccEEEeeCCCCCC----CcccccccCcccccccccCccCCc----cccccccCCCCCCEEEccCCCCc-----ccCcc
Q 000802 741 SGLVQLTLKGCQNLS----SLPVTISSLKRLRNLELSGCSKLK----NFPQIVTSMEDLSELYLDGTSIT-----EVPSS 807 (1278)
Q Consensus 741 ~~L~~L~L~~~~~l~----~lp~~l~~l~~L~~L~L~~~~~l~----~~p~~~~~~~~L~~L~L~~~~l~-----~lp~~ 807 (1278)
++|+.|++++|.... .++..+..+++|++|++++|.... .++..+...++|+.|++++|.+. .++..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 455555555554332 122223344455555555554332 12223334456666666666554 23334
Q ss_pred ccCCCCCCEEeecCCCCCCcccccc-----cCCCCCCEEEecCCCCc----hhhhhhhcCCCCCceeecCCCcccCCCc-
Q 000802 808 IELLTGLELLTLKGCKNLTRLSSSI-----NGLKSLKTLNLSGCSKL----ENVLETLGQVESSEQLDKSGTTIKRPSP- 877 (1278)
Q Consensus 808 l~~l~~L~~L~L~~~~~l~~l~~~~-----~~l~sL~~L~l~~c~~l----~~~~~~l~~l~~L~~L~L~~n~i~~~~~- 877 (1278)
+..+++|+.|++++|.....-...+ ...+.|++|++++|... ..+...+..+++|+.+++++|.+.....
T Consensus 217 ~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~ 296 (319)
T cd00116 217 LASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ 296 (319)
T ss_pred hcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH
Confidence 5556667777777665332111111 12467777777777654 2344556666777777777777764322
Q ss_pred ----ccccc-CCCceeecCCC
Q 000802 878 ----NIFLM-KNFKALSFCGC 893 (1278)
Q Consensus 878 ----~~~~l-~~L~~L~l~~c 893 (1278)
.+... +.|+.|++.++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 297 LLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHhhcCCchhhcccCCC
Confidence 22223 46666665543
No 30
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.16 E-value=3.7e-09 Score=125.92 Aligned_cols=285 Identities=17% Similarity=0.188 Sum_probs=166.1
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc-ccEEeeechhhcccCCCHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISL 258 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l 258 (1278)
..|+.++||++++++|...+.. .......+.|+|++|+|||++++.+++.+..... ..+...++... .+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~----~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID----RTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC----CCHHHH
Confidence 3677899999999999998853 2334456789999999999999999988765542 22222233322 225566
Q ss_pred HHHHHHHHhCCCC-CCccchhhhHHHHHHHHc--CCCceEEEeCCCChh------hhhHhhcCCCCCCCCc--EEEEEeC
Q 000802 259 QKQLLSDLLKLAD-NSIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPD------HLRSLVGEPDWFGPGS--QIIITTR 327 (1278)
Q Consensus 259 ~~~ll~~l~~~~~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs--~IIiTTR 327 (1278)
...++.++..... ....+..+....+.+.+. +++.+||||+++... .+..+....... +++ .+|.++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~-~~~~v~vI~i~~ 181 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY-PGARIGVIGISS 181 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc-CCCeEEEEEEEC
Confidence 7777777654221 122234555666666665 456899999998753 244444332211 233 3566666
Q ss_pred ChhhhhhcC-------ccceEecCCCCHHHHHHHHHHhhcC---CCCCChhHHH-HHHHHHHHcCCCchHHHHHHhhh--
Q 000802 328 NEHLLKLHR-------VRKVYKLEALTYDEAFRLLCLKAFD---THKPFEEYVE-LAESVVKYASGLPLALKVLGSFL-- 394 (1278)
Q Consensus 328 ~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~af~---~~~~~~~~~~-~~~~i~~~~~GlPLal~~lg~~L-- 394 (1278)
+..+..... ....+.+++++.++..+++..++-. .....++..+ +++......|..+.|+.++-...
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 554332211 1246789999999999999887632 2222333222 33333333566777777664322
Q ss_pred ---cC---CCHHHHHHHHHHHhcCCChhHHHHHHhcccCCcHHHHHHHHHhhcccC----CCChHHHH----HHHhhCCC
Q 000802 395 ---FG---RAVHEWTSALERIKRDPEYEILSILQISFDGLKEVEKKIFLDVVCFFK----GRKRDYVS----KILKSCDF 460 (1278)
Q Consensus 395 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~----~~~~~~l~----~~~~~~~~ 460 (1278)
.+ -+.+....+++... .....-.+..||.++|..+..++...+ ......+. .+....|.
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 12 24667777776552 233445678999999988877764432 11222211 12222333
Q ss_pred Ch------hHHHHHHHhcccccee
Q 000802 461 DP------VIGIAVLIEKSLLTVD 478 (1278)
Q Consensus 461 ~~------~~~i~~L~~~~Li~~~ 478 (1278)
.+ ...+..|.+.|+|...
T Consensus 335 ~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 22 3356777777777653
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.11 E-value=1.8e-09 Score=123.62 Aligned_cols=271 Identities=20% Similarity=0.200 Sum_probs=154.4
Q ss_pred CcccchHHHHHHHHHhhhc---CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 185 KELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
..|||++..+++|..++.. .......+.++|++|+|||+||+++++.+...+. ...... ....+.+. .
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~-~~~~~~l~----~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPA-LEKPGDLA----A 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccch-hcCchhHH----H
Confidence 4699999999999988863 1233556889999999999999999987754321 111100 00111011 1
Q ss_pred HHHHHhCCCCC-Cccc----hhhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhhc-
Q 000802 262 LLSDLLKLADN-SIRN----VYDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKLH- 335 (1278)
Q Consensus 262 ll~~l~~~~~~-~~~~----~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~- 335 (1278)
.+..+ ..... -..+ .....+.+...+.+.+..+|+|+..+..++.... .+.+-|..|||...+....
T Consensus 75 ~l~~~-~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~li~~t~~~~~l~~~l~ 147 (305)
T TIGR00635 75 ILTNL-EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDL------PPFTLVGATTRAGMLTSPLR 147 (305)
T ss_pred HHHhc-ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecC------CCeEEEEecCCccccCHHHH
Confidence 11111 10000 0000 0111233444445555555565544444333211 2345566677765443321
Q ss_pred -CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHHHHhc--C
Q 000802 336 -RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALERIKR--D 412 (1278)
Q Consensus 336 -~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~--~ 412 (1278)
.....+++++++.+|..+++.+.+.......+ .+....|++.|+|.|-.+..++..+ |..+. .... .
T Consensus 148 sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~--~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~~i 217 (305)
T TIGR00635 148 DRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE--PEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQKII 217 (305)
T ss_pred hhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC--HHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCCCc
Confidence 12346799999999999999988753322222 3567889999999997665555432 11110 0000 0
Q ss_pred CC---hhHHHHHHhcccCCcHHHHHHHH-HhhcccCC-CChHHHHHHHhhCCCChhHHHH-HHHhccccceeCCC
Q 000802 413 PE---YEILSILQISFDGLKEVEKKIFL-DVVCFFKG-RKRDYVSKILKSCDFDPVIGIA-VLIEKSLLTVDGAN 481 (1278)
Q Consensus 413 ~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~-~~~~~l~~~~~~~~~~~~~~i~-~L~~~~Li~~~~~~ 481 (1278)
.. ......+...|.++++.++..+. .++.+..+ ...+.+...+..........++ .|++++||.....+
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 292 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRG 292 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCch
Confidence 00 12223356678999999888776 44555433 3567777777766666677677 69999999755443
No 32
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.10 E-value=1.8e-08 Score=118.75 Aligned_cols=286 Identities=15% Similarity=0.127 Sum_probs=162.7
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc-----ccEEeeechhhcccCCC
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-----GSSFLADVREKCDKEGS 254 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~ 254 (1278)
..|+.++||+.++++|...+.. .+.....+.|+|++|+|||++++++++.+..... ..+.+.++... ..
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~----~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL----DT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC----CC
Confidence 3567899999999999999863 2334457899999999999999999987653322 12222233322 12
Q ss_pred HHHHHHHHHHHHhC--CCC-CCccchhhhHHHHHHHHc--CCCceEEEeCCCChh-----hhhHhhcCCCC---CCCCcE
Q 000802 255 VISLQKQLLSDLLK--LAD-NSIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPD-----HLRSLVGEPDW---FGPGSQ 321 (1278)
Q Consensus 255 ~~~l~~~ll~~l~~--~~~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-----~~~~l~~~~~~---~~~gs~ 321 (1278)
...+...++.++.. ... ....+..+....+.+.+. +++++||||+++... .+..+.....+ .+....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 45666777777642 111 111123334445555553 567899999998772 13333322111 112334
Q ss_pred EEEEeCChhhhhhc------C-ccceEecCCCCHHHHHHHHHHhhc---CCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 322 IIITTRNEHLLKLH------R-VRKVYKLEALTYDEAFRLLCLKAF---DTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 322 IIiTTR~~~v~~~~------~-~~~~~~l~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
+|.+|......... . ....+.+++.+.+|..+++..++- ......++..+.+.+++....|.|- |+..+
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 55555544322111 1 124678999999999999998863 2222234444556667777788884 33333
Q ss_pred Hhhh-----cC---CCHHHHHHHHHHHhcCCChhHHHHHHhcccCCcHHHHHHHHHhhcccC-CC---ChHHHHH----H
Q 000802 391 GSFL-----FG---RAVHEWTSALERIKRDPEYEILSILQISFDGLKEVEKKIFLDVVCFFK-GR---KRDYVSK----I 454 (1278)
Q Consensus 391 g~~L-----~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~-~~---~~~~l~~----~ 454 (1278)
-... .+ -+.+..+.+.+.+. .....-+...||.+++.++..++..-+ +. ....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 2211 11 24556666665542 133344667999999988777664322 11 1121111 2
Q ss_pred HhhCCCCh------hHHHHHHHhcccccee
Q 000802 455 LKSCDFDP------VIGIAVLIEKSLLTVD 478 (1278)
Q Consensus 455 ~~~~~~~~------~~~i~~L~~~~Li~~~ 478 (1278)
....|..+ ...+..|...|+|...
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 22223222 3457788888888775
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.08 E-value=3.6e-11 Score=151.91 Aligned_cols=212 Identities=20% Similarity=0.238 Sum_probs=116.2
Q ss_pred ChhHHHHHHHhccccceeCCCeEEecHHHHHHHHHHhhccCcCCCC--CccCCCchhhHHHHhhhccCcc----eEEEEE
Q 000802 461 DPVIGIAVLIEKSLLTVDGANRLWTHDLLQEMGRQIVRRQSLEEPG--KRSRLWEEADICHVLSQNTGRE----AVEGII 534 (1278)
Q Consensus 461 ~~~~~i~~L~~~~Li~~~~~~~~~mHdli~~~~~~i~~~~~~~~~~--~~~~l~~~~d~~~~l~~~~~~~----~~~~i~ 534 (1278)
..+..+..++..|++... +..-.+-|.-.++....++..-..... .+...+.+||+++.++.-...+ .-..+.
T Consensus 429 ~~e~Li~yWiaEGfi~~~-~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv 507 (889)
T KOG4658|consen 429 KKEKLIEYWIAEGFIDPL-DGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIV 507 (889)
T ss_pred chHHHHHHHHhccCcCcc-ccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEE
Confidence 345668889999988874 333344444444444444433222222 3445667888777655333220 000111
Q ss_pred EecccccccccccccCchhhcCCCccceEEEcCccCCCCcccCccCceEEEecCCCCCCCCcccccccchhhcccccc--
Q 000802 535 VDHYYFLKDNVNLNASAKAFSQMTNLRLLKISNVQLPEGLGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSC-- 612 (1278)
Q Consensus 535 ~~~~~~l~~~~~~~~~~~~f~~~~~Lr~L~l~~~~l~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~-- 612 (1278)
..... + ...|+... ....|...+.++.+..++......+|+.|-+..+.
T Consensus 508 ~~~~~--------------------~-------~~~~~~~~--~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~ 558 (889)
T KOG4658|consen 508 SDGVG--------------------L-------SEIPQVKS--WNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW 558 (889)
T ss_pred ECCcC--------------------c-------cccccccc--hhheeEEEEeccchhhccCCCCCCccceEEEeecchh
Confidence 11000 0 00111100 13455555555555555555544455555555553
Q ss_pred ccccccc-cccccccceecccCCcccccCC-CCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCc
Q 000802 613 IEELWTG-IKPLNMLKVMKLSHSENLIKTP-NFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGE 690 (1278)
Q Consensus 613 i~~l~~~-~~~l~~L~~L~Ls~~~~~~~~~-~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~ 690 (1278)
+..++.+ +..++.|++|||++|..+...| .++++-+||+|+|+++ .+..+|.++.++++|.+||+..+..+..+|..
T Consensus 559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccch
Confidence 4444333 5667777777777776666655 4666777777777763 45577777777777777777776666666555
Q ss_pred cc-CCCccEEEeeC
Q 000802 691 IF-MKSLKTLVLSG 703 (1278)
Q Consensus 691 ~~-l~~L~~L~L~~ 703 (1278)
.. |.+|++|.+..
T Consensus 638 ~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 638 LLELQSLRVLRLPR 651 (889)
T ss_pred hhhcccccEEEeec
Confidence 53 77777777655
No 34
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.07 E-value=3.3e-09 Score=135.02 Aligned_cols=309 Identities=15% Similarity=0.231 Sum_probs=186.4
Q ss_pred cccchHHHHHHHHHhhhc-CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC---CHHHHHHH
Q 000802 186 ELVGIESRLEKLKVHMDT-RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG---SVISLQKQ 261 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~---~~~~l~~~ 261 (1278)
+++||+.+++.|...+.. ..+...++.+.|.+|||||+|+++|...+.+++ ..|+...-....+.. ++.+..+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~--~~~i~~~f~q~~~~ipl~~lvq~~r~ 78 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQR--GYFIKGKFDQFERNIPLSPLVQAFRD 78 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccc--eeeeHhhcccccCCCchHHHHHHHHH
Confidence 479999999999988874 345567999999999999999999998776551 111111100111111 12222222
Q ss_pred HHHHHhCCCCCCc----------------------------------------cchhhh-----HHHHHHHH-cCCCceE
Q 000802 262 LLSDLLKLADNSI----------------------------------------RNVYDG-----INMLRIRL-RRKKVLV 295 (1278)
Q Consensus 262 ll~~l~~~~~~~~----------------------------------------~~~~~~-----~~~l~~~L-~~kr~Ll 295 (1278)
+..+++...+... ...+.. ...+.... +.++.++
T Consensus 79 l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi 158 (849)
T COG3899 79 LMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVI 158 (849)
T ss_pred HHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEE
Confidence 2222211111000 000000 11122222 3569999
Q ss_pred EEeCCCChhh-----hhHhhcCCC---CCCCCcEEEEEeCCh--hhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 296 VIDDVAHPDH-----LRSLVGEPD---WFGPGSQIIITTRNE--HLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 296 VLDdv~~~~~-----~~~l~~~~~---~~~~gs~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
|+||+.+.+. ++.++.... ......-.+.|.+.. .+.........+.+.||+..+..++...........
T Consensus 159 ~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~ 238 (849)
T COG3899 159 VLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL 238 (849)
T ss_pred EEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc
Confidence 9999976654 344433321 000111223333332 111122334688999999999999998877443332
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHHhhhcCC-------CHHHHHHHHHHHhcCCC-hhHHHHHHhcccCCcHHHHHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKVLGSFLFGR-------AVHEWTSALERIKRDPE-YEILSILQISFDGLKEVEKKIFL 437 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~-------~~~~w~~~l~~l~~~~~-~~i~~~l~~sy~~L~~~~k~~fl 437 (1278)
+ .+....|+++.+|+|+.+..+-..+... +...|..-...+...+. +.+.+.+..-.+.||...|++..
T Consensus 239 ~---~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~ 315 (849)
T COG3899 239 P---APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLK 315 (849)
T ss_pred c---chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2 3578889999999999999999888652 34456555444443221 23566788899999999999999
Q ss_pred HhhcccCCCChHHHHHHHhhCCCChhHHHHHHHhccccceeC----------CC-eEEecHHHHHHHHHHhhc
Q 000802 438 DVVCFFKGRKRDYVSKILKSCDFDPVIGIAVLIEKSLLTVDG----------AN-RLWTHDLLQEMGRQIVRR 499 (1278)
Q Consensus 438 ~la~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~~Li~~~~----------~~-~~~mHdli~~~~~~i~~~ 499 (1278)
..||+.+.++.+.+..++..........+......++|.+.. .. +-+.||.+|+.+-....+
T Consensus 316 ~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~ 388 (849)
T COG3899 316 AAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPE 388 (849)
T ss_pred HHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCch
Confidence 999999999999999888865544444444444444444321 11 337899999888766543
No 35
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.06 E-value=1.7e-09 Score=118.99 Aligned_cols=197 Identities=22% Similarity=0.244 Sum_probs=102.3
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHH------HH
Q 000802 187 LVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISL------QK 260 (1278)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l------~~ 260 (1278)
|+||+.++++|.+++..+ ..+.+.|+|+.|+|||+|++++.+.....-...+|+.......... .... ..
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~~~~~~~ 76 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESS--LRSFIEETSLAD 76 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHH--HHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhH--HHHHHHHHHHHH
Confidence 799999999999998653 3568899999999999999999998754333444443222211100 1111 11
Q ss_pred HHHHHH---hCCCCC------CccchhhhHHHHHHHHc--CCCceEEEeCCCChh-h----------hhHhhcCCCCCCC
Q 000802 261 QLLSDL---LKLADN------SIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPD-H----------LRSLVGEPDWFGP 318 (1278)
Q Consensus 261 ~ll~~l---~~~~~~------~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~-~----------~~~l~~~~~~~~~ 318 (1278)
.+...+ ...... ...........+.+.+. +++++||+||++... . +..+...... ..
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~ 155 (234)
T PF01637_consen 77 ELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQ 155 (234)
T ss_dssp HCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----T
T ss_pred HHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cC
Confidence 111111 111110 11222333444444444 356999999997666 1 2222222111 23
Q ss_pred CcEEEEEeCChhhhhh--------cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 319 GSQIIITTRNEHLLKL--------HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 319 gs~IIiTTR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
.-.+|+++....+... .+....+.+++|+.+++++++...+-.. ...+.-.+..++|+..+||+|..|..
T Consensus 156 ~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 156 NVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred CceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 3445555555444433 2223458999999999999998865333 11111235669999999999998764
No 36
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=2.3e-09 Score=123.41 Aligned_cols=275 Identities=20% Similarity=0.177 Sum_probs=153.9
Q ss_pred CCCcccchHHHHHHHHHhhhc---CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
...+|+|++..++.+..++.. .....+.+.|+|++|+||||+|+.+++.+...+. +.. .. .....+ ..
T Consensus 23 ~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~-~~~~~~----~l 93 (328)
T PRK00080 23 SLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GP-ALEKPG----DL 93 (328)
T ss_pred CHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cc-cccChH----HH
Confidence 456799999999999888763 2344567889999999999999999998754321 111 10 011111 11
Q ss_pred HHHHHHHhCCCCC-Cccch----hhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhh
Q 000802 260 KQLLSDLLKLADN-SIRNV----YDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKL 334 (1278)
Q Consensus 260 ~~ll~~l~~~~~~-~~~~~----~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 334 (1278)
..++..+ ..... -..++ ....+.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...
T Consensus 94 ~~~l~~l-~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 94 AAILTNL-EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHHhc-ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHH
Confidence 1112111 00000 00000 01112223333334444444443332222110 0123455567775443322
Q ss_pred c--CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHHHHhcC
Q 000802 335 H--RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALERIKRD 412 (1278)
Q Consensus 335 ~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~~~ 412 (1278)
. .....+++++++.++..+++.+.+.......+ .+.+..|+++|+|.|-.+..+...+ ..|...-. -...
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~-~~~I 238 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG-DGVI 238 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC-CCCC
Confidence 1 12346899999999999999988754333222 3578899999999996555444432 11111100 0001
Q ss_pred CC---hhHHHHHHhcccCCcHHHHHHHH-HhhcccCCC-ChHHHHHHHhhCCCChhHHHH-HHHhccccceeCCC
Q 000802 413 PE---YEILSILQISFDGLKEVEKKIFL-DVVCFFKGR-KRDYVSKILKSCDFDPVIGIA-VLIEKSLLTVDGAN 481 (1278)
Q Consensus 413 ~~---~~i~~~l~~sy~~L~~~~k~~fl-~la~f~~~~-~~~~l~~~~~~~~~~~~~~i~-~L~~~~Li~~~~~~ 481 (1278)
.. ......+...+..|++..++.+. .+..|..+. ..+.+...+.......+..++ .|++.+||.....+
T Consensus 239 ~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~g 313 (328)
T PRK00080 239 TKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRG 313 (328)
T ss_pred CHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCch
Confidence 11 12334566778899999888885 555665443 667777777666666666777 99999999755433
No 37
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=9.1e-09 Score=106.38 Aligned_cols=143 Identities=24% Similarity=0.341 Sum_probs=85.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcccc-----ccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFD-----GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINM 283 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-----~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1278)
|++.|+|.+|+||||+++.++..+..... ...|+...+....... ...+...+...... . ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~l~~~~~~-~---~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNN-SRSLADLLFDQLPE-S---IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccc-cchHHHHHHHhhcc-c---hhhhHH---H
Confidence 58899999999999999999987755432 2233334444333221 11233333222211 1 111111 1
Q ss_pred HHHH-HcCCCceEEEeCCCChhh---------hhHhh-cCCC-CCCCCcEEEEEeCChhh---hhhcCccceEecCCCCH
Q 000802 284 LRIR-LRRKKVLVVIDDVAHPDH---------LRSLV-GEPD-WFGPGSQIIITTRNEHL---LKLHRVRKVYKLEALTY 348 (1278)
Q Consensus 284 l~~~-L~~kr~LlVLDdv~~~~~---------~~~l~-~~~~-~~~~gs~IIiTTR~~~v---~~~~~~~~~~~l~~L~~ 348 (1278)
+... .+.++++||+|++++... +..++ .... ...++.++|||+|.... .........+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 257899999999977543 11112 1111 12578999999998766 23334446899999999
Q ss_pred HHHHHHHHHhh
Q 000802 349 DEAFRLLCLKA 359 (1278)
Q Consensus 349 ~ea~~Lf~~~a 359 (1278)
++..+++.++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999997654
No 38
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.88 E-value=1.2e-07 Score=106.69 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=104.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
..++.|+|++|+||||+++.+++.....--..+++... ..+...+...+...+ +.... ..........+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~------~~~~~~~l~~i~~~l-G~~~~-~~~~~~~~~~l~~~ 114 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT------RVDAEDLLRMVAADF-GLETE-GRDKAALLRELEDF 114 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC------CCCHHHHHHHHHHHc-CCCCC-CCCHHHHHHHHHHH
Confidence 45789999999999999999998765220011122111 112445566666554 22211 11112222233322
Q ss_pred -----HcCCCceEEEeCCCChh--hhhHhh---cCCCCCCCCcEEEEEeCChhhhhhc----------CccceEecCCCC
Q 000802 288 -----LRRKKVLVVIDDVAHPD--HLRSLV---GEPDWFGPGSQIIITTRNEHLLKLH----------RVRKVYKLEALT 347 (1278)
Q Consensus 288 -----L~~kr~LlVLDdv~~~~--~~~~l~---~~~~~~~~gs~IIiTTR~~~v~~~~----------~~~~~~~l~~L~ 347 (1278)
..+++.++|+||++... .++.+. ...........|++|.... ..... .....+++++++
T Consensus 115 l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~ 193 (269)
T TIGR03015 115 LIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLD 193 (269)
T ss_pred HHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCC
Confidence 25788999999998864 344433 2211112233456665543 21111 123467899999
Q ss_pred HHHHHHHHHHhhcCCCC--CChhHHHHHHHHHHHcCCCchHHHHHHhhh
Q 000802 348 YDEAFRLLCLKAFDTHK--PFEEYVELAESVVKYASGLPLALKVLGSFL 394 (1278)
Q Consensus 348 ~~ea~~Lf~~~af~~~~--~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 394 (1278)
.+|..+++..++..... ...-..+..+.|++.++|.|..+..++..+
T Consensus 194 ~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 194 REETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999999877632211 111123688999999999999999998876
No 39
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.85 E-value=2.5e-07 Score=111.03 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=183.2
Q ss_pred CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
..+.+.|-|..-++.+... .+.|.+.|..++|.|||||+.++.. ....-..+.|+. +.+. ..+.......
T Consensus 16 ~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls-lde~---dndp~rF~~y 85 (894)
T COG2909 16 VRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS-LDES---DNDPARFLSY 85 (894)
T ss_pred CCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee-cCCc---cCCHHHHHHH
Confidence 3466778888766665443 4789999999999999999999987 334445677875 4332 2235566666
Q ss_pred HHHHHhCCCCCCc------------cchhhhHHHHHHHHc--CCCceEEEeCCCChh------hhhHhhcCCCCCCCCcE
Q 000802 262 LLSDLLKLADNSI------------RNVYDGINMLRIRLR--RKKVLVVIDDVAHPD------HLRSLVGEPDWFGPGSQ 321 (1278)
Q Consensus 262 ll~~l~~~~~~~~------------~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~------~~~~l~~~~~~~~~gs~ 321 (1278)
++..+........ .+.....+.+...+. .++..+||||..-.. .++.+.... .++-.
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~---P~~l~ 162 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHA---PENLT 162 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhC---CCCeE
Confidence 6666542221111 122333444444444 468999999975432 255555543 47889
Q ss_pred EEEEeCChhhhhh---cCccceEecC----CCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhh
Q 000802 322 IIITTRNEHLLKL---HRVRKVYKLE----ALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFL 394 (1278)
Q Consensus 322 IIiTTR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 394 (1278)
+|||||...-... --.+...++. .|+.+|+.++|.......-+ ...++.+.++.+|.+-|+..++=.+
T Consensus 163 lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld-----~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 163 LVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD-----AADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC-----hHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999998743322 1122334443 59999999999776522111 2457889999999999999998888
Q ss_pred cC-CCHHHHHHHHHHHhcCCChhHHH-HHHhcccCCcHHHHHHHHHhhcccCCCChHHHHHHHhhCCCChhHHHHHHHhc
Q 000802 395 FG-RAVHEWTSALERIKRDPEYEILS-ILQISFDGLKEVEKKIFLDVVCFFKGRKRDYVSKILKSCDFDPVIGIAVLIEK 472 (1278)
Q Consensus 395 ~~-~~~~~w~~~l~~l~~~~~~~i~~-~l~~sy~~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~~~~~~~~i~~L~~~ 472 (1278)
++ .+.+.-...+. .. ..-|.+ ...--++.||++.|..++-+|++.. +.-+.+..+... -+...-++.|..+
T Consensus 238 ~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~--~ng~amLe~L~~~ 310 (894)
T COG2909 238 RNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGE--ENGQAMLEELERR 310 (894)
T ss_pred cCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcC--CcHHHHHHHHHhC
Confidence 73 33322222111 11 111111 1222358999999999999998842 111222222211 1223447889999
Q ss_pred cccce--eC-CCeEEecHHHHHHHHHHhhcc
Q 000802 473 SLLTV--DG-ANRLWTHDLLQEMGRQIVRRQ 500 (1278)
Q Consensus 473 ~Li~~--~~-~~~~~mHdli~~~~~~i~~~~ 500 (1278)
+|+-+ ++ .++++.|.++.+|.+.-.+.+
T Consensus 311 gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 311 GLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred CCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 98763 33 678999999999998877664
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=4.1e-09 Score=116.15 Aligned_cols=183 Identities=23% Similarity=0.184 Sum_probs=100.5
Q ss_pred ccCCCCCCEEEccCCCCcc---cCccccCCCCCCEEeecCCCCCCccccc-ccCCCCCCEEEecCCCCch-hhhhhhcCC
Q 000802 785 VTSMEDLSELYLDGTSITE---VPSSIELLTGLELLTLKGCKNLTRLSSS-INGLKSLKTLNLSGCSKLE-NVLETLGQV 859 (1278)
Q Consensus 785 ~~~~~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~~~~l~~l~~~-~~~l~sL~~L~l~~c~~l~-~~~~~l~~l 859 (1278)
...+++++.|+|++|-+.. +-.....||+|+.|+|+.|+......+. -..++.|+.|.|+.|.... .+-..+..+
T Consensus 142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 3345555555555554442 2233456677777777766543222111 1246778888888887663 344556677
Q ss_pred CCCceeecCCCc-ccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCC
Q 000802 860 ESSEQLDKSGTT-IKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGE 938 (1278)
Q Consensus 860 ~~L~~L~L~~n~-i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~ 938 (1278)
|+|+.|.|.+|. +.....+...+..|+.|+|++|....... .+....+|.| ..|+++.|.+.+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~---------------~~~~~~l~~L-~~Lnls~tgi~s 285 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQ---------------GYKVGTLPGL-NQLNLSSTGIAS 285 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccc---------------ccccccccch-hhhhccccCcch
Confidence 888888888774 22222233445556666665554332110 0223445555 666666666655
Q ss_pred CCcccc-----cCCCCCCcEecCCCCcCcccc--hhhcCCCCCCEeeccCCc
Q 000802 939 GAIPTD-----IGNLCLLKELCLSGNNFVTLP--ASINSLLNLEELKLEDCK 983 (1278)
Q Consensus 939 ~~lp~~-----l~~l~sL~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~ 983 (1278)
-.+|+. ...+++|++|++..|++...+ ..+..+++|+.|.+..|+
T Consensus 286 i~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 286 IAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred hcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 455543 455666777777777665443 234445556666555544
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=8e-09 Score=107.79 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=41.2
Q ss_pred cCCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 000802 786 TSMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGC 846 (1278)
Q Consensus 786 ~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c 846 (1278)
...+.|++++|++|.|+.+..++.-+|.++.|+++.|..... .++..+++|+.|++++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGN 339 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccc
Confidence 344678888999999998888888888888888888764321 12444555555555554
No 42
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.66 E-value=1e-06 Score=106.55 Aligned_cols=245 Identities=16% Similarity=0.151 Sum_probs=132.4
Q ss_pred CCCCcccchHHHHHHHHHhhhc---CCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----cc-ccEEeeechhhcccC
Q 000802 182 KIPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FD-GSSFLADVREKCDKE 252 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~-~~~~~~~~~~~~~~~ 252 (1278)
.+|+.++||++++++|...|.. +.....++.|+|++|.|||+.++.|.+.+... .+ ..+...++.....
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst-- 829 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH-- 829 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC--
Confidence 4678999999999999988863 33334677899999999999999999766422 12 1222223332211
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc---CCCceEEEeCCCChh--h---hhHhhcCCCCCCCCcEEEE
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR---RKKVLVVIDDVAHPD--H---LRSLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~~~--~---~~~l~~~~~~~~~gs~IIi 324 (1278)
...+...+..++.+..........+....+...+. +...+||||+|+... + +-.|..... ..+++|+|
T Consensus 830 --p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~--~s~SKLiL 905 (1164)
T PTZ00112 830 --PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPT--KINSKLVL 905 (1164)
T ss_pred --HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhh--ccCCeEEE
Confidence 44555666666644333222223334444444442 224589999997653 1 222222111 23555544
Q ss_pred --EeCChh--------hhhhcCccceEecCCCCHHHHHHHHHHhhcCCC-CCChhHHHH-HHHHHHHcCCCchHHHHHHh
Q 000802 325 --TTRNEH--------LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTH-KPFEEYVEL-AESVVKYASGLPLALKVLGS 392 (1278)
Q Consensus 325 --TTR~~~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~-~~~i~~~~~GlPLal~~lg~ 392 (1278)
+|.+.. +...++. ..+..++.+.++..+++..++-... ...++..++ |+.++...|..-.||.++-.
T Consensus 906 IGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRr 984 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRK 984 (1164)
T ss_pred EEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHH
Confidence 333211 1112222 2356799999999999999875321 122333333 33333333444456665544
Q ss_pred hhcC-----CCHHHHHHHHHHHhcCCChhHHHHHHhcccCCcHHHHHHHHHhh
Q 000802 393 FLFG-----RAVHEWTSALERIKRDPEYEILSILQISFDGLKEVEKKIFLDVV 440 (1278)
Q Consensus 393 ~L~~-----~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la 440 (1278)
+... ...+.-..+.+++... .+.-....||.+.|-+++.+.
T Consensus 985 AgEikegskVT~eHVrkAleeiE~s-------rI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112 985 AFENKRGQKIVPRDITEATNQLFDS-------PLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred HHhhcCCCccCHHHHHHHHHHHHhh-------hHHHHHHcCCHHHHHHHHHHH
Confidence 4321 1234444444433221 122234678888876655443
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.9e-09 Score=114.97 Aligned_cols=213 Identities=19% Similarity=0.165 Sum_probs=114.7
Q ss_pred CccccchhhcccCcccccccc--cccCCCCccEEEeeCCCCCCC--cccccccCcccccccccCccCCccccccccCCCC
Q 000802 715 GSMECLRELLLDETDIKEIPR--SIGHLSGLVQLTLKGCQNLSS--LPVTISSLKRLRNLELSGCSKLKNFPQIVTSMED 790 (1278)
Q Consensus 715 ~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~~~~~l~~--lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~ 790 (1278)
.++..|+...|+++.+...+. ....+++++.|+|+.|-...- +......||+|+.|+|+.|.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-------------- 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-------------- 183 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc--------------
Confidence 455667777777777665553 455566666666665532211 11123345555555555544
Q ss_pred CCEEEccCCCCcccCcc--ccCCCCCCEEeecCCCCC-CcccccccCCCCCCEEEecCCCCchhhhhhhcCCCCCceeec
Q 000802 791 LSELYLDGTSITEVPSS--IELLTGLELLTLKGCKNL-TRLSSSINGLKSLKTLNLSGCSKLENVLETLGQVESSEQLDK 867 (1278)
Q Consensus 791 L~~L~L~~~~l~~lp~~--l~~l~~L~~L~L~~~~~l-~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l~~l~~L~~L~L 867 (1278)
+...-++ -..++.|+.|.|+.|..- ..+-.....+|+|+.|.+..|+....-.....-+..|++|+|
T Consensus 184 ----------l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdL 253 (505)
T KOG3207|consen 184 ----------LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDL 253 (505)
T ss_pred ----------ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccc
Confidence 3321111 124455555555555432 122223344566666666666422222222233456667777
Q ss_pred CCCcccCCC--ccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCccccc
Q 000802 868 SGTTIKRPS--PNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIPTDI 945 (1278)
Q Consensus 868 ~~n~i~~~~--~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l 945 (1278)
++|.+.... +..+.++.|..|+++.|....- +.+..-.......++++ +.|+++.|++.+-.--..+
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si----------~~~d~~s~~kt~~f~kL-~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI----------AEPDVESLDKTHTFPKL-EYLNISENNIRDWRSLNHL 322 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchh----------cCCCccchhhhcccccc-eeeecccCccccccccchh
Confidence 777665544 4566677777777666653211 00000000123567777 9999999998653333456
Q ss_pred CCCCCCcEecCCCCcCc
Q 000802 946 GNLCLLKELCLSGNNFV 962 (1278)
Q Consensus 946 ~~l~sL~~L~L~~n~l~ 962 (1278)
..+++|+.|.+..|.+.
T Consensus 323 ~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 323 RTLENLKHLRITLNYLN 339 (505)
T ss_pred hccchhhhhhccccccc
Confidence 77888899988888665
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.63 E-value=3.3e-09 Score=120.30 Aligned_cols=141 Identities=28% Similarity=0.450 Sum_probs=87.1
Q ss_pred CccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccccccCC
Q 000802 661 RDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIGHL 740 (1278)
Q Consensus 661 ~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l 740 (1278)
..+|..++++..|++|+|+. +.+..+|..++.--|+.|-+++ ++++.+|+.++.+..|..|+.+.|.+..+|..++.+
T Consensus 111 r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 111 RTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred eecchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 34455555666666666655 3456677666666677777776 456777888888888888888888888888888888
Q ss_pred CCccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCc
Q 000802 741 SGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPS 806 (1278)
Q Consensus 741 ~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~ 806 (1278)
.+|+.|.++.|. +..+|..+..|+ |..|+++.| ++..+|-.+..|..|++|.|.+|.+..=|.
T Consensus 189 ~slr~l~vrRn~-l~~lp~El~~Lp-Li~lDfScN-kis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 189 TSLRDLNVRRNH-LEDLPEELCSLP-LIRLDFSCN-KISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred HHHHHHHHhhhh-hhhCCHHHhCCc-eeeeecccC-ceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 888888777765 344454444332 444444432 233444444445555555555554444333
No 45
>PRK06893 DNA replication initiation factor; Validated
Probab=98.62 E-value=2.9e-07 Score=99.96 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=92.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
.+.+.|+|++|+|||+||+++++.+..+.....|+. +.. ...... .+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~-~~~-------~~~~~~----------------------~~~~~ 88 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP-LSK-------SQYFSP----------------------AVLEN 88 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee-HHH-------hhhhhH----------------------HHHhh
Confidence 356889999999999999999998765555556654 111 000000 11111
Q ss_pred HcCCCceEEEeCCCCh---hhhhH-hhcCCCCC-CCCcEEEEEeCC----------hhhhhhcCccceEecCCCCHHHHH
Q 000802 288 LRRKKVLVVIDDVAHP---DHLRS-LVGEPDWF-GPGSQIIITTRN----------EHLLKLHRVRKVYKLEALTYDEAF 352 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~---~~~~~-l~~~~~~~-~~gs~IIiTTR~----------~~v~~~~~~~~~~~l~~L~~~ea~ 352 (1278)
++ +.-+|||||++.. .+|+. +...+... ..|.++||+|.+ +.+...+....++++++++.++.+
T Consensus 89 ~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 89 LE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKI 167 (229)
T ss_pred cc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHH
Confidence 22 3359999999864 33432 22211111 245666555443 344455555668999999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 353 RLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 353 ~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
+++.++++...-..+ .++..-|++++.|..-++..+
T Consensus 168 ~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 168 IVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred HHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 999998875433222 256777888888776555444
No 46
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=98.62 E-value=8.1e-08 Score=105.43 Aligned_cols=92 Identities=30% Similarity=0.500 Sum_probs=80.8
Q ss_pred CCCcccEEEcccccccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEecccccc--------
Q 000802 10 SNEKYDVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNYAS-------- 81 (1278)
Q Consensus 10 ~~~~~dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y~~-------- 81 (1278)
.+...|||||||.. +-+..++-+.-.|+-+|++||+|-+.+..|. +.+.+.+.|..++-+|.|++||...
T Consensus 609 ~skq~DVFISYRRs-tGnQLASLiKV~LQL~GyrVFIDVdKL~AGK-FdssLlkni~aAkhFiLVLtP~sLDr~lnD~nC 686 (832)
T KOG3678|consen 609 LSKQIDVFISYRRS-TGNQLASLIKVLLQLRGYRVFIDVDKLYAGK-FDSSLLKNIQAAKHFILVLTPNSLDRLLNDDNC 686 (832)
T ss_pred ccCCcceEEEeecc-ccHHHHHHHHHHHHhcCceEEEehhhhhccc-ccHHHHHHHHhhheeEEEeCcchHHHHhccccH
Confidence 35789999999775 4567899999999999999999999999995 4679999999999999999999754
Q ss_pred chhhHHHHHHHHHhhhcCCceEeEE
Q 000802 82 STWCLDELVKIVECKNRENQILPIF 106 (1278)
Q Consensus 82 s~~c~~El~~~~~~~~~~~~v~pv~ 106 (1278)
-.|.-.|+..+++|.+. |+|||
T Consensus 687 eDWVHKEl~~Afe~~KN---IiPI~ 708 (832)
T KOG3678|consen 687 EDWVHKELKCAFEHQKN---IIPIF 708 (832)
T ss_pred HHHHHHHHHHHHHhcCC---eeeee
Confidence 46889999999999877 99997
No 47
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.57 E-value=4.9e-09 Score=118.89 Aligned_cols=189 Identities=20% Similarity=0.313 Sum_probs=143.3
Q ss_pred ceEEEecCCCCCCCCccc-ccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCC
Q 000802 581 LRLLDWHGYPLKSLPLNL-QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTR 659 (1278)
Q Consensus 581 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~ 659 (1278)
-...|++.|.+..+|..+ .+..|..+.+.+|++..+|..+.++..|.+|+|+.|+....+..++.|+ |+.|.+++ +.
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nk 154 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NK 154 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-Cc
Confidence 345688889999999887 6778899999999999999999999999999999998766666666655 78888887 46
Q ss_pred CCccCcccccCCCceEEEccCCCCCCcCCCcc-cCCCccEEEeeCCCCCCcCCcccCccccchhhcccCccccccccccc
Q 000802 660 LRDIHPSLLLHNKLILLNLKGCTSLTTLPGEI-FMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRSIG 738 (1278)
Q Consensus 660 l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~ 738 (1278)
++.+|..++.+.+|..|+.+.|. +..+|..+ .+.+|+.|.++.| .+..+|+.+..++ |..|++++|++..||-.+.
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn-~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr 231 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELCSLP-LIRLDFSCNKISYLPVDFR 231 (722)
T ss_pred cccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHhCCc-eeeeecccCceeecchhhh
Confidence 78889999988999999988864 55555544 6788888888774 4556666666443 7778888888888888888
Q ss_pred CCCCccEEEeeCCCCCCCccccc---ccCcccccccccCc
Q 000802 739 HLSGLVQLTLKGCQNLSSLPVTI---SSLKRLRNLELSGC 775 (1278)
Q Consensus 739 ~l~~L~~L~L~~~~~l~~lp~~l---~~l~~L~~L~L~~~ 775 (1278)
+|+.|++|-|.+|. +.+-|..+ |+..=.++|+..-|
T Consensus 232 ~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 232 KMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhc
Confidence 88888888888776 45555443 33333445555444
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.55 E-value=9e-08 Score=106.53 Aligned_cols=282 Identities=18% Similarity=0.240 Sum_probs=182.7
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
...|.+.++|.|||||||++-.+.. +...|...+++.+.....++. .+.-.+... +.-. ....+.....+.
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~----~v~~~~ag~-~gl~---~~~g~~~~~~~~ 82 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPA----LVFPTLAGA-LGLH---VQPGDSAVDTLV 82 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchh----HhHHHHHhh-cccc---cccchHHHHHHH
Confidence 3568899999999999999999999 888999888877776654422 112222221 1111 112223455667
Q ss_pred HHHcCCCceEEEeCCCChhh-hhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEecCCCCHH-HHHHHHHHhhcCCC
Q 000802 286 IRLRRKKVLVVIDDVAHPDH-LRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKLEALTYD-EAFRLLCLKAFDTH 363 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~~-~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af~~~ 363 (1278)
.+..++|.++|+||-.+..+ -..+...+....+.-+|+.|+|.... ...+..+.+..|+.. ++.++|...+....
T Consensus 83 ~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 83 RRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhc
Confidence 77889999999999766543 22222222223456678888887533 234556777877765 79999988763322
Q ss_pred CC---ChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHH----HHhcC------CChhHHHHHHhcccCCcH
Q 000802 364 KP---FEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALE----RIKRD------PEYEILSILQISFDGLKE 430 (1278)
Q Consensus 364 ~~---~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~----~l~~~------~~~~i~~~l~~sy~~L~~ 430 (1278)
.. .........+|.+...|.|++|...++..+.....+-.+-++ .+..- ........+..||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 11 223346778899999999999999999988766555444443 22221 234567889999999999
Q ss_pred HHHHHHHHhhcccCCCChHHHHHHHhh-----CCCChhHHHHHHHhccccceeC---CCeEEecHHHHHHHHHHhhc
Q 000802 431 VEKKIFLDVVCFFKGRKRDYVSKILKS-----CDFDPVIGIAVLIEKSLLTVDG---ANRLWTHDLLQEMGRQIVRR 499 (1278)
Q Consensus 431 ~~k~~fl~la~f~~~~~~~~l~~~~~~-----~~~~~~~~i~~L~~~~Li~~~~---~~~~~mHdli~~~~~~i~~~ 499 (1278)
-++-.|-.++.|..+++.+.....-.. ..+.....+..+++++++.... ..+++.-+-.+.|+.+...+
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r 316 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHR 316 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888876622211111 1122345577888999887653 23344455556666555544
No 49
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=1.1e-07 Score=113.44 Aligned_cols=192 Identities=29% Similarity=0.421 Sum_probs=99.9
Q ss_pred ecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCC-CceEEEccCCCCCCcCCCcc-cCCCccEEEeeCCCC
Q 000802 629 MKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHN-KLILLNLKGCTSLTTLPGEI-FMKSLKTLVLSGCLK 706 (1278)
Q Consensus 629 L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~-~L~~L~L~~~~~l~~lp~~~-~l~~L~~L~L~~~~~ 706 (1278)
+++..+........+..++++..|++.++ .+..+++....+. +|+.|++++ +.+..+|..+ .+++|+.|+++.| .
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~ 174 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-D 174 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCc-ccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-h
Confidence 44444443333334444455666666553 3445555555553 666666665 3344444222 4566666666653 3
Q ss_pred CCcCCcccCccccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCcccccccc
Q 000802 707 LRKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVT 786 (1278)
Q Consensus 707 ~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~ 786 (1278)
+..+|...+.+++|+.|++++|.+..+|..++.+..|++|.+.+|. ....+..+..+.++..|.+.++.. ..++..++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~-~~~~~~~~ 252 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKL-EDLPESIG 252 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCcee-eeccchhc
Confidence 3444444445566666666666666666655555556666666554 222333444555555555433322 22244555
Q ss_pred CCCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCC
Q 000802 787 SMEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLT 826 (1278)
Q Consensus 787 ~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~ 826 (1278)
.+.+++.|++++|.+..++. +..+.+|+.|+++++....
T Consensus 253 ~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 253 NLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred cccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence 55556666666666665555 5555555555555554433
No 50
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.52 E-value=1.2e-07 Score=113.27 Aligned_cols=194 Identities=27% Similarity=0.361 Sum_probs=113.8
Q ss_pred eEEEcCccCCCCcccCc--cCceEEEecCCCCCCCCcccccc--cchhhccccccccccccccccccccceecccCCccc
Q 000802 562 LLKISNVQLPEGLGYLS--SKLRLLDWHGYPLKSLPLNLQLD--KAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENL 637 (1278)
Q Consensus 562 ~L~l~~~~l~~~~~~l~--~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~ 637 (1278)
.|.+..+.+......+. ..+..|++.++++..+|...... +|..|+++.+.+..++..+..++.|+.|++++|...
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 35555555422222221 35778888888888888766544 788888888888888777777888888888777644
Q ss_pred ccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCcc
Q 000802 638 IKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSM 717 (1278)
Q Consensus 638 ~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l 717 (1278)
..++....+++|+.|+++++ .+..+|..+.....|+.|.++++..+..+.....+.++..|.+.+ ..+..++..++.+
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l 254 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNL 254 (394)
T ss_pred hhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccc
Confidence 44444446777777777774 345556555555556666666653222222222445555555433 2233334555555
Q ss_pred ccchhhcccCcccccccccccCCCCccEEEeeCCCCCCCcc
Q 000802 718 ECLRELLLDETDIKEIPRSIGHLSGLVQLTLKGCQNLSSLP 758 (1278)
Q Consensus 718 ~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~~~~l~~lp 758 (1278)
.+++.|++++|.+..++. ++.+.+|+.|+++++.....+|
T Consensus 255 ~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 255 SNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 556666666666655555 5555555555555554444333
No 51
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.48 E-value=2.4e-06 Score=93.26 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=99.5
Q ss_pred hHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCC
Q 000802 190 IESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKL 269 (1278)
Q Consensus 190 r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~ 269 (1278)
.+..++.+..++.. ...+.+.|+|++|+|||+||+++++.........+++. +.... ... ..
T Consensus 22 ~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~----------~~~-~~---- 83 (226)
T TIGR03420 22 NAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA----------QAD-PE---- 83 (226)
T ss_pred cHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH----------HhH-HH----
Confidence 45567777777542 34568889999999999999999987654433344443 22211 000 00
Q ss_pred CCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh---h-hhHhhcCCCC-CCCCcEEEEEeCChh---------hhhhc
Q 000802 270 ADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD---H-LRSLVGEPDW-FGPGSQIIITTRNEH---------LLKLH 335 (1278)
Q Consensus 270 ~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~~---------v~~~~ 335 (1278)
+...+. +.-+|||||++... . .+.+...+.. ...+.++|+||+... +....
T Consensus 84 --------------~~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 84 --------------VLEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred --------------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 011122 23489999997653 2 2233322211 123457889887532 11122
Q ss_pred CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHh
Q 000802 336 RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGS 392 (1278)
Q Consensus 336 ~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~ 392 (1278)
.....+++.+++.++...++...+-+.....+ .+....+++.+.|+|..+..+-.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~--~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARRGLQLP--DEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHH
Confidence 22357899999999999999876532221111 25567788889999887766643
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.46 E-value=5.1e-07 Score=102.67 Aligned_cols=61 Identities=28% Similarity=0.531 Sum_probs=37.8
Q ss_pred CCCCCEEEccCCCCcccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhh
Q 000802 788 MEDLSELYLDGTSITEVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVL 853 (1278)
Q Consensus 788 ~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~ 853 (1278)
+.++..|++++|.++.+|. ..++|+.|.+++|..+..+|..+ .++|++|.+++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3556666666666666662 23457777777777776666544 2467777777765554444
No 53
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.45 E-value=5.2e-06 Score=98.70 Aligned_cols=175 Identities=25% Similarity=0.362 Sum_probs=103.8
Q ss_pred CCcccchHHHHHH---HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHH
Q 000802 184 PKELVGIESRLEK---LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 184 ~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
.+.+||.+..+.. +..++.. +....+.++|++|+||||+|+.+++.....|.. +... . .+ ...+ +
T Consensus 11 l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~---~--~~-~~~i-r 78 (413)
T PRK13342 11 LDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV---T--SG-VKDL-R 78 (413)
T ss_pred HHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc---c--cc-HHHH-H
Confidence 3468888887666 7777643 345578899999999999999999876544321 1100 0 01 1111 1
Q ss_pred HHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEE--EeCChh--hh-
Q 000802 261 QLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIII--TTRNEH--LL- 332 (1278)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIi--TTR~~~--v~- 332 (1278)
.++. ..... ..+++.+|++|+++.. .+.+.+..... .|..++| ||.+.. +.
T Consensus 79 ~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 1111 11111 2457889999999865 34555555443 3455554 334322 11
Q ss_pred hhcCccceEecCCCCHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 333 KLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPF-EEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 333 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
.......++.+.+++.++..+++.+.+....... .-..+....+++.++|.+..+..+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1112235789999999999999987653211100 1123567788999999987654443
No 54
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.44 E-value=1e-06 Score=97.37 Aligned_cols=168 Identities=25% Similarity=0.408 Sum_probs=102.4
Q ss_pred CcccchHHHH---HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 185 KELVGIESRL---EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 185 ~~~vGr~~~~---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
+.+||.+.-+ .-|..++. .+.+.-+.+||++|+||||||+.++......|....=+. .+ +.++..
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~g-vkdlr~- 91 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SG-VKDLRE- 91 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------cc-HHHHHH-
Confidence 3455655444 22344443 345667779999999999999999988776655321111 11 222221
Q ss_pred HHHHHhCCCCCCccchhhhHHHH-HHHHcCCCceEEEeCCCC--hhhhhHhhcCCCCCCCCcEEEE--EeCChhhh---h
Q 000802 262 LLSDLLKLADNSIRNVYDGINML-RIRLRRKKVLVVIDDVAH--PDHLRSLVGEPDWFGPGSQIII--TTRNEHLL---K 333 (1278)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIi--TTR~~~v~---~ 333 (1278)
+ ++.- +....+++.+|++|.|.. ..|-+.|++.. ..|.-|+| ||.++... .
T Consensus 92 i------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~A 150 (436)
T COG2256 92 I------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPA 150 (436)
T ss_pred H------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHH
Confidence 1 1222 233458999999999965 44666777664 46777776 56655321 1
Q ss_pred hcCccceEecCCCCHHHHHHHHHHhhcCCCCCCh-----hHHHHHHHHHHHcCCCch
Q 000802 334 LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFE-----EYVELAESVVKYASGLPL 385 (1278)
Q Consensus 334 ~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~-----~~~~~~~~i~~~~~GlPL 385 (1278)
......++++++|+.+|-.+++.+.+-......+ -..+....++..++|---
T Consensus 151 LlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R 207 (436)
T COG2256 151 LLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDAR 207 (436)
T ss_pred HhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHH
Confidence 1234568999999999999999884322211111 123466678888888654
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-08 Score=108.56 Aligned_cols=65 Identities=28% Similarity=0.366 Sum_probs=47.4
Q ss_pred ccCCCCCccEEEecCCCCCCCCcc---cc-cCCCCCCcEecCCCCcCc-----ccchhhcCCCCCCEeeccCCcC
Q 000802 919 ALMLPSLSEKLDLSDCCLGEGAIP---TD-IGNLCLLKELCLSGNNFV-----TLPASINSLLNLEELKLEDCKR 984 (1278)
Q Consensus 919 ~~~l~~lL~~L~Ls~~~l~~~~lp---~~-l~~l~sL~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~~ 984 (1278)
+..++.+ +.|++++|.+.+...- .. -...|+|+.|.+.+|.++ .+-.++...+.|+.|+|++|..
T Consensus 237 L~s~~~L-~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 237 LSSWPHL-RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hcccchh-eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3445555 9999999988654321 11 234789999999999887 3455677789999999999953
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.34 E-value=1.8e-07 Score=100.83 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=67.9
Q ss_pred CCCccEEEeeCCCCCCcCCc----ccCccccchhhcccCcccccc--------------cccccCCCCccEEEeeCCCCC
Q 000802 693 MKSLKTLVLSGCLKLRKFPR----VAGSMECLRELLLDETDIKEI--------------PRSIGHLSGLVQLTLKGCQNL 754 (1278)
Q Consensus 693 l~~L~~L~L~~~~~~~~lp~----~~~~l~~L~~L~L~~~~i~~l--------------p~~i~~l~~L~~L~L~~~~~l 754 (1278)
++.|++|+||+|..-...++ .+.++..|++|.|.+|.+... ...+..-++|+.+...+|+.-
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 55777777777665544333 345667788888888776521 123444566777777666532
Q ss_pred CC----cccccccCcccccccccCccCCcc----ccccccCCCCCCEEEccCCCCc-----ccCccccCCCCCCEEeecC
Q 000802 755 SS----LPVTISSLKRLRNLELSGCSKLKN----FPQIVTSMEDLSELYLDGTSIT-----EVPSSIELLTGLELLTLKG 821 (1278)
Q Consensus 755 ~~----lp~~l~~l~~L~~L~L~~~~~l~~----~p~~~~~~~~L~~L~L~~~~l~-----~lp~~l~~l~~L~~L~L~~ 821 (1278)
.. +...+...+.|+.+.+..|.+... +...+..+++|+.|+|.+|.++ .+...+..++.|+.|++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 11 112234445566666555543321 2233444555555555555544 1222334444455555554
Q ss_pred CC
Q 000802 822 CK 823 (1278)
Q Consensus 822 ~~ 823 (1278)
|.
T Consensus 251 cl 252 (382)
T KOG1909|consen 251 CL 252 (382)
T ss_pred cc
Confidence 43
No 57
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=2e-07 Score=97.61 Aligned_cols=147 Identities=24% Similarity=0.285 Sum_probs=69.4
Q ss_pred hcCCCccceEEEcCccC--CCCcccCccCceEEEecCCCCCCCCcccc-------------------------cccchhh
Q 000802 554 FSQMTNLRLLKISNVQL--PEGLGYLSSKLRLLDWHGYPLKSLPLNLQ-------------------------LDKAVEF 606 (1278)
Q Consensus 554 f~~~~~Lr~L~l~~~~l--~~~~~~l~~~Lr~L~l~~~~l~~lp~~~~-------------------------~~~L~~L 606 (1278)
+.-+++|+.+.++.+.- -.++..+-..|..+..+.......|.... ...|.++
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Ltel 289 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTEL 289 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhc
Confidence 33456667777765532 12333344567777766655444332211 2345556
Q ss_pred ccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCc
Q 000802 607 SMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTT 686 (1278)
Q Consensus 607 ~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~ 686 (1278)
++++|.|..+-++.+-++.+|.|++++|.... ...+..+++|+.|+|++|. +..+...-..+-+.+.|.|++| .+..
T Consensus 290 DLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N-~iE~ 366 (490)
T KOG1259|consen 290 DLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQN-KIET 366 (490)
T ss_pred cccccchhhhhhhhhhccceeEEeccccceee-ehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhh-hHhh
Confidence 66666666555555555666666666554222 2235555555555555532 2222222223334444444442 2333
Q ss_pred CCCcccCCCccEEEeeC
Q 000802 687 LPGEIFMKSLKTLVLSG 703 (1278)
Q Consensus 687 lp~~~~l~~L~~L~L~~ 703 (1278)
+.+.-.+-+|..|++++
T Consensus 367 LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLSS 383 (490)
T ss_pred hhhhHhhhhheeccccc
Confidence 33333344444444444
No 58
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.33 E-value=8.3e-06 Score=95.10 Aligned_cols=199 Identities=16% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEeeechhhcccCCCHHHHHHH-
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQ- 261 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~- 261 (1278)
.+.++|++..++.+..++..+ ..+.+.++|+.|+||||+|+++++.+... +.......++.+..... ...+...
T Consensus 14 ~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~ 89 (337)
T PRK12402 14 LEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG--KKYLVEDP 89 (337)
T ss_pred HHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc--hhhhhcCc
Confidence 357899999999999988643 33467899999999999999999876433 22222222232211100 0000000
Q ss_pred HHHHHhCCC-CCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhh
Q 000802 262 LLSDLLKLA-DNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLL 332 (1278)
Q Consensus 262 ll~~l~~~~-~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~ 332 (1278)
......... .............++... ...+-+||+||++... ..+.+...+....+.+++|+||... .+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~ 169 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLI 169 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCc
Confidence 000000000 000000111111111111 1334589999997653 2333333322234567788877543 222
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALK 388 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 388 (1278)
.. ......+++.+++.++..+++...+-......+ .+....++++++|.+-.+.
T Consensus 170 ~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~--~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 170 PPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYD--DDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 21 122346789999999999999887643322211 3567788888988765443
No 59
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.30 E-value=2.6e-06 Score=89.78 Aligned_cols=50 Identities=32% Similarity=0.518 Sum_probs=35.6
Q ss_pred cccchHHHHHHHHHhhh-cCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 186 ELVGIESRLEKLKVHMD-TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.||||+++++++...+. ......+.+.|+|++|+|||+|+++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999994 334567899999999999999999999887766
No 60
>PF13173 AAA_14: AAA domain
Probab=98.29 E-value=1.5e-06 Score=85.14 Aligned_cols=120 Identities=20% Similarity=0.192 Sum_probs=77.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
.+++.|.|+.|+|||||++++++... .-...+++. +.... ..... . . +..+.+.+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~-----~~~~~-----~-----------~-~~~~~~~~~ 57 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR-----DRRLA-----D-----------P-DLLEYFLEL 57 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH-----HHHHh-----h-----------h-hhHHHHHHh
Confidence 36899999999999999999997665 223334443 22210 00000 0 0 012333334
Q ss_pred HcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhh------cCccceEecCCCCHHHH
Q 000802 288 LRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKL------HRVRKVYKLEALTYDEA 351 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea 351 (1278)
...++.+|+||++....+|......+...++..+|++|+........ .+....+++.||+..|-
T Consensus 58 ~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 58 IKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 44478899999999998887776655544567899999998766533 12234679999998773
No 61
>PRK08727 hypothetical protein; Validated
Probab=98.28 E-value=1.9e-05 Score=86.04 Aligned_cols=168 Identities=15% Similarity=0.115 Sum_probs=95.6
Q ss_pred Ccccc-hHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHH
Q 000802 185 KELVG-IESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLL 263 (1278)
Q Consensus 185 ~~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll 263 (1278)
++||+ -...+..+..+... .....+.|+|..|+|||+||+++++....+.....|+. +.+ ....+.
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~~----------~~~~~~ 85 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQA----------AAGRLR 85 (233)
T ss_pred hhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HHH----------hhhhHH
Confidence 34544 33344444443322 22345899999999999999999987765544445553 211 111100
Q ss_pred HHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh---hhh-HhhcCCCC-CCCCcEEEEEeCCh---------
Q 000802 264 SDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD---HLR-SLVGEPDW-FGPGSQIIITTRNE--------- 329 (1278)
Q Consensus 264 ~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~~~-~l~~~~~~-~~~gs~IIiTTR~~--------- 329 (1278)
. ..+.+ .+.-+|||||++... .++ .+...... ...|..||+|++..
T Consensus 86 ------------------~-~~~~l-~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 86 ------------------D-ALEAL-EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ------------------H-HHHHH-hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 0 11111 234589999997432 222 22221111 12466799999852
Q ss_pred hhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 330 HLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 330 ~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
.+.........+++++++.++..+++.+++....-..+ .+....++++++|-.-++
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~--~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALD--EAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHHHH
Confidence 22222233458899999999999999987754322222 256677777777655443
No 62
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=7e-06 Score=98.62 Aligned_cols=194 Identities=19% Similarity=0.124 Sum_probs=109.8
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhh--ccccccEEeeechhhcc--cCCCHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLIS--HEFDGSSFLADVREKCD--KEGSVISL 258 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~~~--~~~~~~~l 258 (1278)
..+.++|.+..++.|..++..+. -...+.++|++|+||||+|+.+++.+. +.+...|+......... .+.++..+
T Consensus 12 ~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el 90 (504)
T PRK14963 12 TFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEI 90 (504)
T ss_pred CHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEe
Confidence 34568999998888988886532 335668999999999999999998763 22222333221000000 00000000
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCC-hhhhhh
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRN-EHLLKL 334 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~~ 334 (1278)
-.........+.+..+.+.. -..+++-++|+|+++.. +.++.++..+....+...+|++|.. ..+...
T Consensus 91 --------~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 91 --------DAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred --------cccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000011111111111111 11245669999999865 3466666655433455566655543 333222
Q ss_pred c-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 335 H-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 335 ~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
. .....+++.+++.++..+.+.+.+-......+ .+.+..|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~--~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAE--PEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 2 23458899999999999999887744332221 356788999999988533
No 63
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.26 E-value=3e-07 Score=93.65 Aligned_cols=103 Identities=26% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCCccceEEEcCccCC--CCcccCccCceEEEecCCCCCCCCcccccccchhhcccccccccccccc-ccccccceeccc
Q 000802 556 QMTNLRLLKISNVQLP--EGLGYLSSKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIEELWTGI-KPLNMLKVMKLS 632 (1278)
Q Consensus 556 ~~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l~~~~-~~l~~L~~L~Ls 632 (1278)
+..++|.|++.++.++ +.+.....+|+.|++++|.+..++..-.+.+|++|++++|.|..+..++ ..+++|+.|+++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 3445677777777665 3444322467777777777776665445666666666666666665444 245666666666
Q ss_pred CCcc--cccCCCCCCCCCccEEEEcCCC
Q 000802 633 HSEN--LIKTPNFTEVPNLEELDLEGCT 658 (1278)
Q Consensus 633 ~~~~--~~~~~~~~~l~~L~~L~L~~c~ 658 (1278)
+|+. +.....++.+++|++|+|.+|+
T Consensus 97 ~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 97 NNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp TS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 6552 2222334455555555555544
No 64
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.24 E-value=7.6e-06 Score=95.81 Aligned_cols=172 Identities=16% Similarity=0.278 Sum_probs=100.7
Q ss_pred CCcccchHHHHHHHHHhhhcC-----------CCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccC
Q 000802 184 PKELVGIESRLEKLKVHMDTR-----------SNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKE 252 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1278)
.+.+.|++..++++.+.+... -...+-+.++|++|+|||++|+++++.....|-...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~------------ 188 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV------------ 188 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc------------
Confidence 346899999999998876421 123456889999999999999999987765432110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHH-HHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCC
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGIN-MLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDW 315 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~ 315 (1278)
...+......+ ...... .+...-...+.+|++|+++... .+..+......
T Consensus 189 --~~~l~~~~~g~-----------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 189 --GSELVRKYIGE-----------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred --hHHHHHHhhhH-----------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 00111111000 000111 1111123467899999987541 12233322221
Q ss_pred C--CCCcEEEEEeCChh-----hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcCCCc
Q 000802 316 F--GPGSQIIITTRNEH-----LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPF-EEYVELAESVVKYASGLP 384 (1278)
Q Consensus 316 ~--~~gs~IIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlP 384 (1278)
. ..+.+||.||.... +.+....+..++++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 1 24667888887543 222223466889999999999999998875543222 12 345666676654
No 65
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=5.1e-05 Score=88.55 Aligned_cols=191 Identities=15% Similarity=0.147 Sum_probs=108.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc---cEEee-echhhcccCCCHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG---SSFLA-DVREKCDKEGSVISL 258 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~~~~~~~~l 258 (1278)
..+.++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+...... .+-.. .+++.
T Consensus 14 ~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~---------- 82 (363)
T PRK14961 14 YFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI---------- 82 (363)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH----------
Confidence 3457899999999999888643 234567899999999999999999876421100 00000 00000
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-h
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-H 330 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~ 330 (1278)
......++...........++ ...+.+.+ .+++-++|+|+++... .++.++..+....+..++|++|.+. .
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000000000000000000111 11121221 2345699999998765 3666666555445566777776543 2
Q ss_pred hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 331 LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
+... ......+++.+++.++..+.+...+-......+ .+.+..|++.++|.|-.+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~--~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTD--EYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 3222 222358899999999999988876643322121 256778899999988543
No 66
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.23 E-value=5.7e-05 Score=81.20 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=88.6
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccc-cEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDG-SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
....+.|+|..|+|||.|.+++++.+....+. .+.... .......+...+-. .....++
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~----------~~~~~~~ 92 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRD----------GEIEEFK 92 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHT----------TSHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHc----------ccchhhh
Confidence 45568899999999999999999987665443 232222 22333333333211 1234455
Q ss_pred HHHcCCCceEEEeCCCChhh---hh-HhhcCCC-CCCCCcEEEEEeCChh---------hhhhcCccceEecCCCCHHHH
Q 000802 286 IRLRRKKVLVVIDDVAHPDH---LR-SLVGEPD-WFGPGSQIIITTRNEH---------LLKLHRVRKVYKLEALTYDEA 351 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~~---~~-~l~~~~~-~~~~gs~IIiTTR~~~---------v~~~~~~~~~~~l~~L~~~ea 351 (1278)
+.++ .-=+|++||++.... |+ .+...+. ....|.+||+|++... +.......-++++++++.++.
T Consensus 93 ~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 93 DRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDR 171 (219)
T ss_dssp HHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHH
T ss_pred hhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHH
Confidence 5565 445889999976432 22 2211111 1135678999996531 222233445899999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHH
Q 000802 352 FRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALK 388 (1278)
Q Consensus 352 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 388 (1278)
.+++.+++-...-..+ .+++.-+++++.+..-.+.
T Consensus 172 ~~il~~~a~~~~~~l~--~~v~~~l~~~~~~~~r~L~ 206 (219)
T PF00308_consen 172 RRILQKKAKERGIELP--EEVIEYLARRFRRDVRELE 206 (219)
T ss_dssp HHHHHHHHHHTT--S---HHHHHHHHHHTTSSHHHHH
T ss_pred HHHHHHHHHHhCCCCc--HHHHHHHHHhhcCCHHHHH
Confidence 9999988754332222 2556666666665544443
No 67
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=8e-05 Score=90.50 Aligned_cols=194 Identities=18% Similarity=0.152 Sum_probs=109.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
..+++||.+..++.|..++..+. -...+.++|..|+||||+|+.+.+.+...-... ...+. .-...+.+
T Consensus 14 tFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~--~~PCG--------~C~sCr~I 82 (830)
T PRK07003 14 DFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT--SQPCG--------VCRACREI 82 (830)
T ss_pred cHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC--CCCCc--------ccHHHHHH
Confidence 34579999999999999986432 245667999999999999999988663210000 00000 00000000
Q ss_pred HH----HHhCCCCCCccchhhhHHHHHHH----HcCCCceEEEeCCCChhh--hhHhhcCCCCCCCCcEEEEEeCChhhh
Q 000802 263 LS----DLLKLADNSIRNVYDGINMLRIR----LRRKKVLVVIDDVAHPDH--LRSLVGEPDWFGPGSQIIITTRNEHLL 332 (1278)
Q Consensus 263 l~----~l~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~v~ 332 (1278)
.. +++..........++..+.+... ..++.-++|||+++.... ++.|+..+..-....++|+||++.+-.
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 00 00000000000111111111111 123455888999987753 666666554445678888888775432
Q ss_pred h-h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc-hHHHH
Q 000802 333 K-L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP-LALKV 389 (1278)
Q Consensus 333 ~-~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~ 389 (1278)
. . ......+.++.++.++..+.+.+.+-...... ..+....|++.++|.. -|+..
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i--d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF--EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1 22235789999999999999987764332222 2356778889998865 34444
No 68
>PRK04195 replication factor C large subunit; Provisional
Probab=98.19 E-value=3.3e-05 Score=93.80 Aligned_cols=177 Identities=14% Similarity=0.192 Sum_probs=105.4
Q ss_pred CCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 184 PKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
...++|.+..++++..|+.. .+...+.+.|+|++|+||||+|+++++.+. |+. +.+ +... .. ......+
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~-iel-nasd----~r-~~~~i~~ 83 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEV-IEL-NASD----QR-TADVIER 83 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEE-cccc----cc-cHHHHHH
Confidence 34699999999999999864 222367899999999999999999998763 221 111 1111 11 1112222
Q ss_pred HHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhh------hhHhhcCCCCCCCCcEEEEEeCChh-hhh-
Q 000802 262 LLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDH------LRSLVGEPDWFGPGSQIIITTRNEH-LLK- 333 (1278)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~~~~~gs~IIiTTR~~~-v~~- 333 (1278)
+........ .....++-+||+|+++.... +..+..... ..+..||+|+.+.. ...
T Consensus 84 ~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 84 VAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred HHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 222211100 00113677999999987532 444443332 23455666665432 111
Q ss_pred -hcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHH
Q 000802 334 -LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALK 388 (1278)
Q Consensus 334 -~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 388 (1278)
.-.....+++.+++.++....+...+.......+ .++...|++.++|..-.+.
T Consensus 147 ~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~--~eaL~~Ia~~s~GDlR~ai 200 (482)
T PRK04195 147 ELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD--DEALKEIAERSGGDLRSAI 200 (482)
T ss_pred hHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 1123457899999999999988877644332222 3567889999998765443
No 69
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.18 E-value=6.1e-05 Score=87.09 Aligned_cols=179 Identities=16% Similarity=0.205 Sum_probs=102.6
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHH
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLS 264 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~ 264 (1278)
..++|++..++.+..++..+ ..+.+.++|..|+||||+|+.+++.+........++. +.. ....+ .. .....+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~~~-~~-~~~~~i~ 90 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDERG-ID-VIRNKIK 90 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccccc-hH-HHHHHHH
Confidence 46899999999999988643 3345789999999999999999987643211111111 100 00000 11 1111111
Q ss_pred HHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccce
Q 000802 265 DLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKV 340 (1278)
Q Consensus 265 ~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~ 340 (1278)
++..... .....+-++|+|+++... ....+........+.+++|+++... .+... ......
T Consensus 91 ~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~ 155 (319)
T PRK00440 91 EFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAV 155 (319)
T ss_pred HHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhhe
Confidence 1110000 001235589999987653 2334444333334567777776432 22111 112346
Q ss_pred EecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 341 YKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 341 ~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
+++.+++.++....+...+-......+ .+.+..+++.++|.+--
T Consensus 156 ~~~~~l~~~ei~~~l~~~~~~~~~~i~--~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 156 FRFSPLKKEAVAERLRYIAENEGIEIT--DDALEAIYYVSEGDMRK 199 (319)
T ss_pred eeeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 899999999999998887754332221 35677888999998754
No 70
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.17 E-value=8.7e-05 Score=89.29 Aligned_cols=194 Identities=15% Similarity=0.130 Sum_probs=108.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc--cc-EEe-eechhhcc-cCCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD--GS-SFL-ADVREKCD-KEGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~--~~-~~~-~~~~~~~~-~~~~~~~ 257 (1278)
....+||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-.... .. |=. ..++.... .+.++..
T Consensus 13 tFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 13 NFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 34579999999999999986442 2467789999999999999999986632110 00 000 00000000 0000000
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCChhhh--
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNEHLL-- 332 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~v~-- 332 (1278)
+ -........++.+.+..+.. -..+++-++|+|+|+... ....++..+....++.++|++|.+..-.
T Consensus 92 I--------DAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 92 I--------DAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred e--------cccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0 00000001111111111111 113566689999998763 4555655544334567888877764322
Q ss_pred hhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 333 KLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 333 ~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
........+++.+++.++..+.+.+.+-+.....+ .+....|++.++|.+-.+
T Consensus 164 TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id--~eAL~~IA~~S~GdLRdA 216 (702)
T PRK14960 164 TVISRCLQFTLRPLAVDEITKHLGAILEKEQIAAD--QDAIWQIAESAQGSLRDA 216 (702)
T ss_pred HHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 11233458899999999999998877644322222 356778899999977443
No 71
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.17 E-value=2.5e-05 Score=85.16 Aligned_cols=172 Identities=17% Similarity=0.162 Sum_probs=95.0
Q ss_pred Cccc-chHHH-HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 185 KELV-GIESR-LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 185 ~~~v-Gr~~~-~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
++|+ |...+ +..+..+.. .....+.+.|+|..|+|||+||+++++.....-....++. ... . ...+
T Consensus 18 d~f~~~~~~~~~~~l~~~~~-~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~-------~---~~~~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAA-GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AAS-------P---LLAF 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHh-ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHH-------h---HHHH
Confidence 3444 55443 344555443 2234567889999999999999999986533322233333 111 0 0000
Q ss_pred HHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCCC-CCCCc-EEEEEeCChhhhh-----
Q 000802 263 LSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPDW-FGPGS-QIIITTRNEHLLK----- 333 (1278)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~-~~~gs-~IIiTTR~~~v~~----- 333 (1278)
.. ....-+||+||++... +.+.+...... ...+. .+|+|++......
T Consensus 86 -----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~ 141 (227)
T PRK08903 86 -----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLRED 141 (227)
T ss_pred -----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHH
Confidence 01 1234479999997543 22223222211 12334 3666666432111
Q ss_pred ---hcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhh
Q 000802 334 ---LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFL 394 (1278)
Q Consensus 334 ---~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 394 (1278)
.+.....++++++++++-..++.+.+-......+ .++...+++...|++..+..+-..|
T Consensus 142 L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 142 LRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLA--DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1222357899999999877777664422222222 3567778888999998877765544
No 72
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.16 E-value=1.3e-06 Score=89.11 Aligned_cols=57 Identities=30% Similarity=0.419 Sum_probs=18.7
Q ss_pred CCCCCEEEccCCCCcccCc--cccCCCCCCEEeecCCCCCCc---ccccccCCCCCCEEEec
Q 000802 788 MEDLSELYLDGTSITEVPS--SIELLTGLELLTLKGCKNLTR---LSSSINGLKSLKTLNLS 844 (1278)
Q Consensus 788 ~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L~~~~~l~~---l~~~~~~l~sL~~L~l~ 844 (1278)
+++|+.|++++|.+..+.. .+..+++|+.|+|.+|+.... -...+..+|+|+.||-.
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 4444555555554443322 244555555555555543211 01123445666666543
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.15 E-value=8.1e-05 Score=85.48 Aligned_cols=179 Identities=13% Similarity=0.182 Sum_probs=102.0
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc-cccccEEeeechhhcccCCCHHHHHHHH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
-+.++|.+..++.|..++..+ ..+.+.++|++|+||||+|+++++.+.. .|...+.-.+.. ...+ .. ..+..
T Consensus 12 l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~s---d~~~-~~-~vr~~ 84 (319)
T PLN03025 12 LDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNAS---DDRG-ID-VVRNK 84 (319)
T ss_pred HHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccc---cccc-HH-HHHHH
Confidence 346889998888888877543 3445779999999999999999987632 333221111111 0011 11 11111
Q ss_pred HHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCcc
Q 000802 263 LSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVR 338 (1278)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~ 338 (1278)
+........ . .-.++.-++|||+++... ....+..........+++|+++... .+... ....
T Consensus 85 i~~~~~~~~-~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV-T-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc-c-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 111100000 0 001345689999998763 2333333333334567787777543 22111 1123
Q ss_pred ceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 339 KVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 339 ~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
..+++++++.++..+.+...+-......+ .+....+++.++|..-
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~egi~i~--~~~l~~i~~~~~gDlR 195 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAEKVPYV--PEGLEAIIFTADGDMR 195 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 47899999999999998877644332222 2567888899988764
No 74
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.8e-05 Score=85.91 Aligned_cols=246 Identities=20% Similarity=0.246 Sum_probs=145.2
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccccc-EEeeechhhcccCCCHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS-SFLADVREKCDKEGSVISL 258 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-~~~~~~~~~~~~~~~~~~l 258 (1278)
..|+.+.+|+.+++++...|.. .+....-+.|+|..|.|||+.++.+++++....... +...|+... ....++
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~----~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL----RTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC----CCHHHH
Confidence 3566799999999999988863 222233488999999999999999999887664444 333345443 236677
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHHc--CCCceEEEeCCCChhh-----hhHhhcCCCCCCCCcEE--EEEeCCh
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPDH-----LRSLVGEPDWFGPGSQI--IITTRNE 329 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~-----~~~l~~~~~~~~~gs~I--IiTTR~~ 329 (1278)
..+++.++.... .......+....+.+.+. ++.++||||+++.... +-.|....... .++| |..+-+.
T Consensus 90 ~~~i~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi~i~n~~ 166 (366)
T COG1474 90 LSKILNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEEEEeccH
Confidence 777877765322 222344455566666665 5789999999976543 22333332222 3444 3344443
Q ss_pred hhhhh--------cCccceEecCCCCHHHHHHHHHHhh---cCCCCCChhHHHHHHHHHHHcCCCc-hHHHHHHhh--hc
Q 000802 330 HLLKL--------HRVRKVYKLEALTYDEAFRLLCLKA---FDTHKPFEEYVELAESVVKYASGLP-LALKVLGSF--LF 395 (1278)
Q Consensus 330 ~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~lg~~--L~ 395 (1278)
..... .+.. .+..++-+.+|-...+..++ |......++..+++..++.+.+|-. .|+..+-.. +.
T Consensus 167 ~~~~~ld~rv~s~l~~~-~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 167 KFLDYLDPRVKSSLGPS-EIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHhhhhhhhccCcc-eeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 33222 2222 36788889999999998876 4444555666677777777777633 344443222 21
Q ss_pred C------CCHHHHHHHHHHHhcCCChhHHHHHHhcccCCcHHHHHHHHHhhcc
Q 000802 396 G------RAVHEWTSALERIKRDPEYEILSILQISFDGLKEVEKKIFLDVVCF 442 (1278)
Q Consensus 396 ~------~~~~~w~~~l~~l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f 442 (1278)
. .+.+.-..+.+... .....-....|+.++|-.+..++..
T Consensus 246 e~~~~~~v~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~ki~L~~i~~~ 291 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEIE-------RDVLEEVLKTLPLHQKIVLLAIVEL 291 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHhh-------HHHHHHHHHcCCHhHHHHHHHHHHh
Confidence 1 11222222211111 1222333678888888776665544
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.14 E-value=9.6e-08 Score=105.08 Aligned_cols=251 Identities=22% Similarity=0.293 Sum_probs=131.4
Q ss_pred ccccccceecccCCcccccCC--C-CCCCCCccEEEEcCCCCCCccCc--ccccCCCceEEEccCCCCCCcCCCcc---c
Q 000802 621 KPLNMLKVMKLSHSENLIKTP--N-FTEVPNLEELDLEGCTRLRDIHP--SLLLHNKLILLNLKGCTSLTTLPGEI---F 692 (1278)
Q Consensus 621 ~~l~~L~~L~Ls~~~~~~~~~--~-~~~l~~L~~L~L~~c~~l~~l~~--~l~~l~~L~~L~L~~~~~l~~lp~~~---~ 692 (1278)
.+.++++.|.+.+|.+++... . -..+++|++|+|..|..+....- -...+++|.+|+++.|..+..-.-.. .
T Consensus 161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG 240 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRG 240 (483)
T ss_pred hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhcc
Confidence 344555555665555433322 1 23356666666666655544321 12245666666666665544310000 2
Q ss_pred CCCccEEEeeCCCCCCc--CCcccCccccchhhcccCc-cccccc--ccccCCCCccEEEeeCCCCCCCcccc--cccCc
Q 000802 693 MKSLKTLVLSGCLKLRK--FPRVAGSMECLRELLLDET-DIKEIP--RSIGHLSGLVQLTLKGCQNLSSLPVT--ISSLK 765 (1278)
Q Consensus 693 l~~L~~L~L~~~~~~~~--lp~~~~~l~~L~~L~L~~~-~i~~lp--~~i~~l~~L~~L~L~~~~~l~~lp~~--l~~l~ 765 (1278)
++.|+.+.+.||...+. +-..-+.+..+..+++..+ .++... ..-..+..|+.|+.++|......+-. .....
T Consensus 241 ~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~ 320 (483)
T KOG4341|consen 241 CKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCH 320 (483)
T ss_pred chhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCC
Confidence 44455665556554321 1111122222333333222 222111 11233566777777777665443321 23567
Q ss_pred ccccccccCccCCccc--cccccCCCCCCEEEccCCCCc---ccCccccCCCCCCEEeecCCCCCCcc-----cccccCC
Q 000802 766 RLRNLELSGCSKLKNF--PQIVTSMEDLSELYLDGTSIT---EVPSSIELLTGLELLTLKGCKNLTRL-----SSSINGL 835 (1278)
Q Consensus 766 ~L~~L~L~~~~~l~~~--p~~~~~~~~L~~L~L~~~~l~---~lp~~l~~l~~L~~L~L~~~~~l~~l-----~~~~~~l 835 (1278)
+|+.|.+++|..+... ...-.+.+.|+.+++.++... .+-+.-.+++.|+.|.|+.|...+.. ...-.++
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 7777777777765432 223345666777777665443 23333456777777777777666543 3444566
Q ss_pred CCCCEEEecCCCCchh-hhhhhcCCCCCceeecCCCc
Q 000802 836 KSLKTLNLSGCSKLEN-VLETLGQVESSEQLDKSGTT 871 (1278)
Q Consensus 836 ~sL~~L~l~~c~~l~~-~~~~l~~l~~L~~L~L~~n~ 871 (1278)
..|..|.+++|+.+.+ ..+.+..+++|+.+++.+++
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777788888777643 45566666677776666554
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.2e-07 Score=99.54 Aligned_cols=176 Identities=22% Similarity=0.258 Sum_probs=109.6
Q ss_pred CCCEEEccCCCCc--ccCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhh--hhhhcCCCCCcee
Q 000802 790 DLSELYLDGTSIT--EVPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENV--LETLGQVESSEQL 865 (1278)
Q Consensus 790 ~L~~L~L~~~~l~--~lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~--~~~l~~l~~L~~L 865 (1278)
.|+.|+|+...++ .+...+..+.+|+.|.|.++..-..+...+..-.+|+.|+|+.|+..... .-.+++++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777777666 45555677888888888888776667777777788888888888877653 3346778888888
Q ss_pred ecCCCcccCCCcc---ccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCCCCcc
Q 000802 866 DKSGTTIKRPSPN---IFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGEGAIP 942 (1278)
Q Consensus 866 ~L~~n~i~~~~~~---~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~~~lp 942 (1278)
+++.|.+...... ..--++|+.|+++||... +....+.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------------------------l~~sh~~ 306 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------------------------LQKSHLS 306 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------------------------hhhhHHH
Confidence 8888765432210 011245555555555421 1011122
Q ss_pred cccCCCCCCcEecCCCCc-Cc-ccchhhcCCCCCCEeeccCCcCCCcCCC------CCCCCcEEEecCCccc
Q 000802 943 TDIGNLCLLKELCLSGNN-FV-TLPASINSLLNLEELKLEDCKRLQSLPQ------LPPNVEKVRVNGCASL 1006 (1278)
Q Consensus 943 ~~l~~l~sL~~L~L~~n~-l~-~lp~~i~~l~~L~~L~L~~c~~L~~lp~------lp~sL~~L~i~~C~~L 1006 (1278)
.-...+++|.+|+|++|. ++ ..-..+.+++.|++|.++.|..+ +|+ --|+|.+|++.+|-+=
T Consensus 307 tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 307 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred HHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 223445666666666663 22 23335667888888888888654 232 1267888888887553
No 77
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=2.4e-05 Score=84.43 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=83.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
.+.+.|||+.|+|||+|+++++.... ..++. .......+...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~-----------~~~~~~~~~~~---------------------- 85 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH-----------PNEIGSDAANA---------------------- 85 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec-----------HHHcchHHHHh----------------------
Confidence 46689999999999999998886532 22332 11111111111
Q ss_pred HcCCCceEEEeCCCChh----hhhHhhcCCCCCCCCcEEEEEeCC---------hhhhhhcCccceEecCCCCHHHHHHH
Q 000802 288 LRRKKVLVVIDDVAHPD----HLRSLVGEPDWFGPGSQIIITTRN---------EHLLKLHRVRKVYKLEALTYDEAFRL 354 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~----~~~~l~~~~~~~~~gs~IIiTTR~---------~~v~~~~~~~~~~~l~~L~~~ea~~L 354 (1278)
+.+ -+|++||++... .+-.+..... ..|..||+|++. +.+...+....++++++++.++-.++
T Consensus 86 ~~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 86 AAE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQV 161 (226)
T ss_pred hhc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHH
Confidence 111 278899996432 2222222111 346789998873 23333445557899999999999999
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 355 LCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 355 f~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
+.+++-...-..+ .++..-|++++.|..-++..
T Consensus 162 L~~~~~~~~~~l~--~ev~~~La~~~~r~~~~l~~ 194 (226)
T PRK09087 162 IFKLFADRQLYVD--PHVVYYLVSRMERSLFAAQT 194 (226)
T ss_pred HHHHHHHcCCCCC--HHHHHHHHHHhhhhHHHHHH
Confidence 9988743322112 35677777777777665554
No 78
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.13 E-value=2.1e-05 Score=79.18 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHh
Q 000802 188 VGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL 267 (1278)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~ 267 (1278)
+|++..+..+...+... ..+.+.|+|++|+||||+|+++++.+...- ..+++.+..+..... .... .... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~-~~v~~~~~~~~~~~~----~~~~-~~~~-~ 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPG-APFLYLNASDLLEGL----VVAE-LFGH-F 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCC-CCeEEEehhhhhhhh----HHHH-Hhhh-h
Confidence 47888899998887542 346788999999999999999998775322 233333333221110 0000 0000 0
Q ss_pred CCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCCh-----hhhhHhhcCCCCC---CCCcEEEEEeCChh
Q 000802 268 KLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHP-----DHLRSLVGEPDWF---GPGSQIIITTRNEH 330 (1278)
Q Consensus 268 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-----~~~~~l~~~~~~~---~~gs~IIiTTR~~~ 330 (1278)
............++.++|+||++.. ..+..+....... ..+.+||+||....
T Consensus 72 -----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred -----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0011112223456789999999864 2233333332221 36788888888653
No 79
>PLN03150 hypothetical protein; Provisional
Probab=98.12 E-value=4.7e-06 Score=104.15 Aligned_cols=113 Identities=27% Similarity=0.453 Sum_probs=74.1
Q ss_pred CCEEEecCCCCchhhhhhhcCCCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCC
Q 000802 838 LKTLNLSGCSKLENVLETLGQVESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCP 917 (1278)
Q Consensus 838 L~~L~l~~c~~l~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~ 917 (1278)
++.|+|++|.....+|..++.+++|+.|+|++|.+.+..+ .
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP---------------------------------------~ 460 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP---------------------------------------P 460 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCC---------------------------------------h
Confidence 4555666665555566666666666666666666554322 1
Q ss_pred cccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCc-ccchhhcCC-CCCCEeeccCCcCCCcCCCC
Q 000802 918 AALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFV-TLPASINSL-LNLEELKLEDCKRLQSLPQL 991 (1278)
Q Consensus 918 ~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~-~lp~~i~~l-~~L~~L~L~~c~~L~~lp~l 991 (1278)
.+..++.| +.|+|++|++ .+.+|..++.+++|+.|+|++|+++ .+|..+..+ .++..+++.+|+.+...|.+
T Consensus 461 ~~~~l~~L-~~LdLs~N~l-sg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l 534 (623)
T PLN03150 461 SLGSITSL-EVLDLSYNSF-NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL 534 (623)
T ss_pred HHhCCCCC-CEEECCCCCC-CCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence 12333344 6667777766 4567888888888888888888887 678777653 46778888888777666553
No 80
>PRK05642 DNA replication initiation factor; Validated
Probab=98.12 E-value=7.5e-05 Score=81.29 Aligned_cols=150 Identities=17% Similarity=0.221 Sum_probs=88.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
...+.|+|..|+|||.||+++++.+..+-..++|+. .. .+... ...+.+.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~----------~~~~~-------------------~~~~~~~ 94 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LA----------ELLDR-------------------GPELLDN 94 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HH----------HHHhh-------------------hHHHHHh
Confidence 367889999999999999999987654433445553 11 11110 0122233
Q ss_pred HcCCCceEEEeCCCCh---hhhhH-hhcCCCC-CCCCcEEEEEeCChhh---------hhhcCccceEecCCCCHHHHHH
Q 000802 288 LRRKKVLVVIDDVAHP---DHLRS-LVGEPDW-FGPGSQIIITTRNEHL---------LKLHRVRKVYKLEALTYDEAFR 353 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~---~~~~~-l~~~~~~-~~~gs~IIiTTR~~~v---------~~~~~~~~~~~l~~L~~~ea~~ 353 (1278)
+++- =++|+||+... .+|+. +...+.. ...|.+||+|++...- ...+....++++++++.++-.+
T Consensus 95 ~~~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~ 173 (234)
T PRK05642 95 LEQY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLR 173 (234)
T ss_pred hhhC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHH
Confidence 3322 26889999633 23332 3322221 1346788888875321 1122233578999999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 354 LLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
++..++....-..+ .++..-+++++.|..-++..+
T Consensus 174 il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 174 ALQLRASRRGLHLT--DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHHHH
Confidence 99876644322222 356677777777765544443
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=0.00019 Score=83.03 Aligned_cols=200 Identities=14% Similarity=0.093 Sum_probs=108.1
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc-c-ccccEEeeechhhcccCCCHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH-E-FDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~-f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
....++|.+...+.+.+.+..+ .-...+.++|+.|+||+|+|.++++.+-. . ......-.. .......+ ....-+
T Consensus 17 ~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~-~~~l~~~~-~c~~c~ 93 (365)
T PRK07471 17 ETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPP-PTSLAIDP-DHPVAR 93 (365)
T ss_pred chhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccc-cccccCCC-CChHHH
Confidence 4467999999999999888653 23456889999999999999999976521 1 010000000 00000000 000001
Q ss_pred HHHHH----H--hC-CCCCCcc--chhhhHHHHH---HHHc-----CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcE
Q 000802 261 QLLSD----L--LK-LADNSIR--NVYDGINMLR---IRLR-----RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQ 321 (1278)
Q Consensus 261 ~ll~~----l--~~-~~~~~~~--~~~~~~~~l~---~~L~-----~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 321 (1278)
.+... + +. ..+.... ...-.++.++ +.+. +++-++|+||++..+ ....|+..+..-.++..
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~~ 173 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARSL 173 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeE
Confidence 11000 0 00 0000000 0001122233 3332 456789999997654 34455444333235666
Q ss_pred EEEEeCChh-hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 322 IIITTRNEH-LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 322 IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
+|++|.... +... ......+.+.+++.++..+++...... ..+ +....+++.++|.|+....+.
T Consensus 174 ~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~~---~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 174 FLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LPD---DPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred EEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CCH---HHHHHHHHHcCCCHHHHHHHh
Confidence 777776653 3222 223458899999999999999876421 111 222678999999998665553
No 82
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.12 E-value=1.4e-07 Score=103.86 Aligned_cols=274 Identities=21% Similarity=0.304 Sum_probs=182.3
Q ss_pred ccceecccCCcccccCC---CCCCCCCccEEEEcCCCCCCccC--cccccCCCceEEEccCCCCCCcCCCc-c--cCCCc
Q 000802 625 MLKVMKLSHSENLIKTP---NFTEVPNLEELDLEGCTRLRDIH--PSLLLHNKLILLNLKGCTSLTTLPGE-I--FMKSL 696 (1278)
Q Consensus 625 ~L~~L~Ls~~~~~~~~~---~~~~l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~~L~L~~~~~l~~lp~~-~--~l~~L 696 (1278)
.|+.|.+.+++.....+ ....+||+++|.+.+|..+++.. ..-..+++|++|++..|..++...-. + .+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 46777777777554433 35779999999999998665532 22346789999999999887754322 1 58999
Q ss_pred cEEEeeCCCCCCc--CCcccCccccchhhcccCcccc---cccccccCCCCccEEEeeCCCCCCCccc--ccccCccccc
Q 000802 697 KTLVLSGCLKLRK--FPRVAGSMECLRELLLDETDIK---EIPRSIGHLSGLVQLTLKGCQNLSSLPV--TISSLKRLRN 769 (1278)
Q Consensus 697 ~~L~L~~~~~~~~--lp~~~~~l~~L~~L~L~~~~i~---~lp~~i~~l~~L~~L~L~~~~~l~~lp~--~l~~l~~L~~ 769 (1278)
++|++++|..+.. +.....++..++.+.+.++.-. .+-..-....-+..+++..|..+..... .-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 9999999987754 2233345556777766653211 1112223455577777777766554331 1235778999
Q ss_pred ccccCccCCcccc--ccccCCCCCCEEEccCCCC-cc--cCccccCCCCCCEEeecCCCCCCc--ccccccCCCCCCEEE
Q 000802 770 LELSGCSKLKNFP--QIVTSMEDLSELYLDGTSI-TE--VPSSIELLTGLELLTLKGCKNLTR--LSSSINGLKSLKTLN 842 (1278)
Q Consensus 770 L~L~~~~~l~~~p--~~~~~~~~L~~L~L~~~~l-~~--lp~~l~~l~~L~~L~L~~~~~l~~--l~~~~~~l~sL~~L~ 842 (1278)
|+.++|......+ ....+..+|+.|.+.+++- +. +..--.+.+.|+.+++..|..... +...-.+++.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 9999998866543 3345678899999988753 21 122235678889999988875543 344445789999999
Q ss_pred ecCCCCchhh-----hhhhcCCCCCceeecCCCcccC--CCccccccCCCceeecCCCCCCCC
Q 000802 843 LSGCSKLENV-----LETLGQVESSEQLDKSGTTIKR--PSPNIFLMKNFKALSFCGCNGSPS 898 (1278)
Q Consensus 843 l~~c~~l~~~-----~~~l~~l~~L~~L~L~~n~i~~--~~~~~~~l~~L~~L~l~~c~~~~~ 898 (1278)
+++|...... ...-..+..|+.+.++++.... ....+..+++|+.+.+-+|+....
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence 9999876543 2333456788889998887543 233556778888888888875443
No 83
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=7.8e-05 Score=85.40 Aligned_cols=177 Identities=18% Similarity=0.221 Sum_probs=106.8
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc------ccccEEeeechhhcccCCCHHHH
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE------FDGSSFLADVREKCDKEGSVISL 258 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~------f~~~~~~~~~~~~~~~~~~~~~l 258 (1278)
+.++|.+..++.+...+..+ .-.....++|+.|+||||+|++++..+-.. .+...|.. .. ...-.+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~---~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-IN---KKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-cc---CCCCCHHH-
Confidence 46889999999999988643 234577899999999999999999865321 12112211 00 00000111
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCC--hhhhhHhhcCCCCCCCCcEEEEEeCChhhh-hh-
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAH--PDHLRSLVGEPDWFGPGSQIIITTRNEHLL-KL- 334 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~- 334 (1278)
.+.+...+.. .-..+++=++|+|+++. ...++.++..+..-.+++.+|++|.+.... ..
T Consensus 78 ir~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 1111111100 00123445666676654 455777777766556788888888765322 11
Q ss_pred cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 335 HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 335 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
......+++.+++.++....+.+... . .. .+.+..++.+++|.|..+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~-~--~~---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN-D--IK---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc-C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22245889999999999888866542 1 11 234677899999998755433
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.09 E-value=0.00016 Score=90.56 Aligned_cols=169 Identities=25% Similarity=0.345 Sum_probs=97.0
Q ss_pred CCcccchHHHHH---HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHH
Q 000802 184 PKELVGIESRLE---KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 184 ~~~~vGr~~~~~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
.+.+||.+..+. .+...+.. +....+.++|++|+||||+|+.+++.....|. .+..+ . .+ +..+ +
T Consensus 27 ldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~---~--~~-i~di-r 94 (725)
T PRK13341 27 LEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV---L--AG-VKDL-R 94 (725)
T ss_pred HHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh---h--hh-hHHH-H
Confidence 346889888774 45555543 34556789999999999999999987655442 11100 0 00 1111 1
Q ss_pred HHHHHHhCCCCCCccchhhhHHHHHHHH--cCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEE--eCChh--hh
Q 000802 261 QLLSDLLKLADNSIRNVYDGINMLRIRL--RRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIIT--TRNEH--LL 332 (1278)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiT--TR~~~--v~ 332 (1278)
+......+.+ .+++.++||||++.. .+.+.+.... ..|..++|+ |.+.. +.
T Consensus 95 ------------------~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 95 ------------------AEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEVN 153 (725)
T ss_pred ------------------HHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhhh
Confidence 1111121122 246779999999754 4566666543 245555553 33321 11
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCC-----CCCChhHHHHHHHHHHHcCCCch
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDT-----HKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~-----~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
.. .....++.+++++.++...++.+.+-.. .....-..+....|++++.|..-
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 1123578999999999999998765310 11111123566778888888653
No 85
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=1.5e-05 Score=78.53 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccc----cccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEF----DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGIN 282 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~ 282 (1278)
+.+++.|+|.+|+|||++++.+++.....+ ...+++..+.... ....+...++..+...... ..+..+..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR----TPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS----SHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC----CHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 346889999999999999999998764421 2333333344332 3677778888776543332 344556667
Q ss_pred HHHHHHcCCCc-eEEEeCCCCh-h--hhhHhhcCCCCCCCCcEEEEEeCC
Q 000802 283 MLRIRLRRKKV-LVVIDDVAHP-D--HLRSLVGEPDWFGPGSQIIITTRN 328 (1278)
Q Consensus 283 ~l~~~L~~kr~-LlVLDdv~~~-~--~~~~l~~~~~~~~~gs~IIiTTR~ 328 (1278)
.+.+.+...+. +||+|+++.. . .++.+..... ..+.++|+..+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77777776555 9999999876 3 3455544333 567788887775
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=3.2e-05 Score=90.51 Aligned_cols=191 Identities=14% Similarity=0.116 Sum_probs=108.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc---cEEeeechhhcccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG---SSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
..+.+||.+..+..|..++..+. -...+.++|+.|+||||+|+.+++.+...-.. .|..... -..+.
T Consensus 16 ~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s---------C~~i~ 85 (484)
T PRK14956 16 FFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS---------CLEIT 85 (484)
T ss_pred CHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH---------HHHHH
Confidence 44578999999999998886532 23457899999999999999999866432110 0000000 00000
Q ss_pred HHHHHHHh--C-CCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhh
Q 000802 260 KQLLSDLL--K-LADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLL 332 (1278)
Q Consensus 260 ~~ll~~l~--~-~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~ 332 (1278)
.....++. . .......++.+..+.+... ..++.-++|+|+++... .++.|+..+........+|++|.. ..+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 00000000 0 0001111122222222211 23566699999998653 477777665533345555545543 4343
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
.. ......|.+.+++.++..+.+.+.+-...... ..+....|++.++|.+-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~--e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQY--DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCChHH
Confidence 22 22345799999999999998887764332211 23567889999999884
No 87
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.07 E-value=0.0001 Score=80.36 Aligned_cols=169 Identities=16% Similarity=0.217 Sum_probs=94.8
Q ss_pred ccchHH-HHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHH
Q 000802 187 LVGIES-RLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSD 265 (1278)
Q Consensus 187 ~vGr~~-~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1278)
++|-.. .+..+..+... ...+.+.|+|+.|+|||+||+++++....+-....|+. +... .. .
T Consensus 25 ~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~----------~~-~--- 87 (235)
T PRK08084 25 YPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR----------AW-F--- 87 (235)
T ss_pred ccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH----------hh-h---
Confidence 346332 34445554432 23457889999999999999999987665433334443 2110 00 0
Q ss_pred HhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCCh---hhhhHhh-cCCCC-CCCC-cEEEEEeCCh---------h
Q 000802 266 LLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHP---DHLRSLV-GEPDW-FGPG-SQIIITTRNE---------H 330 (1278)
Q Consensus 266 l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~-~~~~~-~~~g-s~IIiTTR~~---------~ 330 (1278)
...+.+.+.. --+|++||++.. .+|+..+ ..+.. ...| .++|+||+.. .
T Consensus 88 ---------------~~~~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~ 151 (235)
T PRK08084 88 ---------------VPEVLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPD 151 (235)
T ss_pred ---------------hHHHHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHH
Confidence 0011111111 248899999654 2333211 11110 0123 4799998854 2
Q ss_pred hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 331 LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 331 v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
+...+....+++++++++++-.+++.+++....-..+ .++..-+++++.|..-++..+
T Consensus 152 L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~--~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 152 LASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELP--EDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred HHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhhcCCHHHHHHH
Confidence 2333444568999999999999999886643322222 356777777777766544433
No 88
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=7.3e-05 Score=92.68 Aligned_cols=195 Identities=17% Similarity=0.116 Sum_probs=110.5
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-c-cc-cEEeee-chhhccc-CCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-F-DG-SSFLAD-VREKCDK-EGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~-~~~~~~-~~~~~~~-~~~~~~ 257 (1278)
....+||.+..++.|..++..+ .=...+.++|+.|+||||+|+.+++.+... . .. .|..+. +...... ..++
T Consensus 14 tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv-- 90 (944)
T PRK14949 14 TFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL-- 90 (944)
T ss_pred CHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE--
Confidence 3457899999999999888643 223456899999999999999999876432 1 00 011000 0000000 0000
Q ss_pred HHHHHHHHHhCCC-CCCccchhhhHHHHHH-HHcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCCh-hhh
Q 000802 258 LQKQLLSDLLKLA-DNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNE-HLL 332 (1278)
Q Consensus 258 l~~~ll~~l~~~~-~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~ 332 (1278)
.. +... ......+.+..+.+.. -..+++-++|||+++.. +..+.|+..+.......++|++|.+. .+.
T Consensus 91 ------iE-idAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 91 ------IE-VDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred ------EE-eccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 0011111111211111 12366779999999765 45666666555444567777666553 333
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
.. ......|++.+++.++..+.+.+.+-..... -..+.+..|++.++|.|--+..
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~--~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLP--FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22 2224689999999999999998766332211 1235678899999998854333
No 89
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.0002 Score=85.96 Aligned_cols=195 Identities=13% Similarity=0.066 Sum_probs=109.3
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc----------cccEEeeechhhccc-
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF----------DGSSFLADVREKCDK- 251 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----------~~~~~~~~~~~~~~~- 251 (1278)
..+++||.+..++.|...+..+. -...+.++|..|+||||+|+.+.+.+-..- .+... ..++.....
T Consensus 14 tFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C-~sC~~I~aG~ 91 (700)
T PRK12323 14 DFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC-RACTEIDAGR 91 (700)
T ss_pred cHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc-HHHHHHHcCC
Confidence 34579999999999999886432 235678999999999999999998663210 00000 000000000
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC
Q 000802 252 EGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN 328 (1278)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~ 328 (1278)
+.++. .+-...+....++.+..+.+... ..++.-++|||+++... ..+.|+..+..-..+.++|++|.+
T Consensus 92 hpDvi--------EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 92 FVDYI--------EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCcce--------EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 00000 00000001111111111111111 13456699999998764 467777666544456676655554
Q ss_pred -hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 329 -EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 329 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
..+... ......+.+..++.++..+.+.+.+-......+ .+....|++.++|.|.....
T Consensus 164 p~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d--~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 164 PQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHE--VNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 444322 122357899999999999988876633222211 24567889999999864433
No 90
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.02 E-value=9.6e-05 Score=86.84 Aligned_cols=197 Identities=15% Similarity=0.142 Sum_probs=108.3
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc----cc-ccEEeeechhhcc-cCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE----FD-GSSFLADVREKCD-KEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~-~~~~~~~~~~~~~-~~~~~~ 256 (1278)
..+.++|.+..++.+...+..+ .-...+.++|+.|+||||+|+.++..+... +. +...- .+..... .+.++.
T Consensus 12 ~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~-~c~~~~~~~~~~~~ 89 (355)
T TIGR02397 12 TFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE-SCKEINSGSSLDVI 89 (355)
T ss_pred cHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH-HHHHHhcCCCCCEE
Confidence 3456899999999999988643 234577899999999999999999866322 11 00000 0000000 000000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCChh-hh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNEH-LL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~-v~ 332 (1278)
.+ -+.......+..+..+.+... ..+++-++|+|+++.. .....+...+....+.+.+|++|.+.. +.
T Consensus 90 ~~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 90 EI--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIP 161 (355)
T ss_pred Ee--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHH
Confidence 00 000000000011111111100 1244558899998765 345555555544345677777765543 22
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
.. ......+++.+++.++..+.+..++-......+ .+.+..+++.++|.|..+....
T Consensus 162 ~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 162 ATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCChHHHHHHH
Confidence 22 122357889999999999999877643322222 2567888999999886554443
No 91
>PTZ00202 tuzin; Provisional
Probab=98.02 E-value=3.6e-05 Score=86.94 Aligned_cols=162 Identities=15% Similarity=0.133 Sum_probs=99.1
Q ss_pred CCCCcccchHHHHHHHHHhhhc-CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDT-RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
.....|+||+.++.++...|.. +....+++.|.|++|+|||||++.+..... ...++.+.+ + ..++++
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g-~eElLr 327 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------G-TEDTLR 327 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------C-HHHHHH
Confidence 5677899999999999999974 333456999999999999999999997654 224444443 2 677888
Q ss_pred HHHHHHhCCCCCCccchhhhHHHHHHHH-----c-CCCceEEEeCCCChhhhhHhh---cCCCCCCCCcEEEEEeCChhh
Q 000802 261 QLLSDLLKLADNSIRNVYDGINMLRIRL-----R-RKKVLVVIDDVAHPDHLRSLV---GEPDWFGPGSQIIITTRNEHL 331 (1278)
Q Consensus 261 ~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVLDdv~~~~~~~~l~---~~~~~~~~gs~IIiTTR~~~v 331 (1278)
.++.++.-... ....+....|.+.+ . +++.+||+-==+ -..+...- -.+.....-|+|++----+.+
T Consensus 328 ~LL~ALGV~p~---~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lre-g~~l~rvyne~v~la~drr~ch~v~evplesl 403 (550)
T PTZ00202 328 SVVKALGVPNV---EACGDLLDFISEACRRAKKMNGETPLLVLKLRE-GSSLQRVYNEVVALACDRRLCHVVIEVPLESL 403 (550)
T ss_pred HHHHHcCCCCc---ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecC-CCcHHHHHHHHHHHHccchhheeeeeehHhhc
Confidence 88888653221 12223333333332 2 677777773211 11111110 011111345777775554433
Q ss_pred hhh---cCccceEecCCCCHHHHHHHHHHh
Q 000802 332 LKL---HRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 332 ~~~---~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
.-. ...-..|.++.++.++|.++-...
T Consensus 404 t~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 404 TIANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred chhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 211 122347899999999998876443
No 92
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00013 Score=87.98 Aligned_cols=197 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc---ccEEee-echhhcc-cCCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD---GSSFLA-DVREKCD-KEGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~~-~~~~~~~-~~~~~~~ 257 (1278)
....+||.+..++.+...+..+ .-...+.++|+.|+||||+|+.+++.+..... ..|-.. .+..... .+.++..
T Consensus 14 ~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 14 SFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 3457899999999999888643 23355789999999999999999986532110 000000 0000000 0000000
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhhh
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLLK 333 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~ 333 (1278)
+ -........+..+..+.+... ..+++-++|+|+++... ..+.|+..+......+.+|++|.+ ..+..
T Consensus 93 i--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~ 164 (546)
T PRK14957 93 I--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPV 164 (546)
T ss_pred e--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhh
Confidence 0 000000001111111222111 23566799999998653 466666555543456666655544 33332
Q ss_pred h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 334 L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 334 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
. ......+++.+++.++..+.+.+.+-..... -..+....|++.++|.+- |+..+
T Consensus 165 tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~--~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 165 TILSRCIQLHLKHISQADIKDQLKIILAKENIN--SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 2234688999999999888887655332211 123456778888998664 44444
No 93
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=8.1e-05 Score=90.46 Aligned_cols=194 Identities=15% Similarity=0.142 Sum_probs=105.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc---cEEee-echhhcc-cCCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG---SSFLA-DVREKCD-KEGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~-~~~~~~~-~~~~~~~ 257 (1278)
....+||.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+-..-.. .|-.. .++.... .+.++.
T Consensus 14 tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl- 91 (709)
T PRK08691 14 TFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL- 91 (709)
T ss_pred CHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE-
Confidence 4457999999999999998753 224568899999999999999998765321100 00000 0000000 000000
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChhh--hhHhhcCCCCCCCCcEEEEEeCChh-hhh
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPDH--LRSLVGEPDWFGPGSQIIITTRNEH-LLK 333 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~-v~~ 333 (1278)
.+-........++.+.++..... ..+++-++|+|+++.... .+.|+..+.......++|++|.+.. +..
T Consensus 92 -------EidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~ 164 (709)
T PRK08691 92 -------EIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPV 164 (709)
T ss_pred -------EEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccch
Confidence 00000000011111111111110 125667999999987643 4444444332235667777776542 221
Q ss_pred h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 334 L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 334 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
. .+....+.+..++.++..+.+.+.+-+.....+ .+....|++.++|.+.-+
T Consensus 165 TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id--~eAL~~Ia~~A~GslRdA 217 (709)
T PRK08691 165 TVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYE--PPALQLLGRAAAGSMRDA 217 (709)
T ss_pred HHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHhCCCHHHH
Confidence 1 122346788899999999998877643322222 256788999999988543
No 94
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.97 E-value=3.9e-05 Score=83.08 Aligned_cols=146 Identities=22% Similarity=0.354 Sum_probs=85.9
Q ss_pred CcccchHHHHHH---HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 185 KELVGIESRLEK---LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 185 ~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
+.+||.+..+.+ |.+++ +.+...-+.+||++|.||||||+.+...-+.+- ..|+. ++.......++..
T Consensus 138 ~dyvGQ~hlv~q~gllrs~i--eq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve-lSAt~a~t~dvR~---- 208 (554)
T KOG2028|consen 138 DDYVGQSHLVGQDGLLRSLI--EQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE-LSATNAKTNDVRD---- 208 (554)
T ss_pred HHhcchhhhcCcchHHHHHH--HcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE-EeccccchHHHHH----
Confidence 345665555433 22233 335667788999999999999999997554331 33443 2222111111222
Q ss_pred HHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCC--hhhhhHhhcCCCCCCCCcEEEE--EeCChhhh---hh
Q 000802 262 LLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAH--PDHLRSLVGEPDWFGPGSQIII--TTRNEHLL---KL 334 (1278)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~~~~~~l~~~~~~~~~gs~IIi--TTR~~~v~---~~ 334 (1278)
+..+. .-...+.++|..|.+|.|.. ..|-+.+++.. ..|.-++| ||.++..- ..
T Consensus 209 ife~a----------------q~~~~l~krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aL 269 (554)
T KOG2028|consen 209 IFEQA----------------QNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAAL 269 (554)
T ss_pred HHHHH----------------HHHHhhhcceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHH
Confidence 22211 01123457889999999964 34555555543 46776666 66665321 12
Q ss_pred cCccceEecCCCCHHHHHHHHHHh
Q 000802 335 HRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 335 ~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
.....++.++.|+.++...++.+.
T Consensus 270 lSRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 270 LSRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred HhccceeEeccCCHHHHHHHHHHH
Confidence 234568899999999999988773
No 95
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.2e-05 Score=89.54 Aligned_cols=65 Identities=28% Similarity=0.577 Sum_probs=43.1
Q ss_pred CCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCc
Q 000802 643 FTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPR 712 (1278)
Q Consensus 643 ~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~ 712 (1278)
+..+.++++|++++| .+..+|. ...+|+.|.+++|..+..+|..+ .++|++|.+++|..+..+|.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L-P~nLe~L~Ls~Cs~L~sLP~ 112 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSI-PEGLEKLTVCHCPEISGLPE 112 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchh-hhhhhheEccCccccccccc
Confidence 344577888888887 5666661 23457778887777777777644 45677777777765555554
No 96
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.95 E-value=7.8e-05 Score=87.61 Aligned_cols=172 Identities=16% Similarity=0.235 Sum_probs=97.6
Q ss_pred CCcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccC
Q 000802 184 PKELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKE 252 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1278)
.+.+.|++..++++.+.+.. +-...+-|.++|++|.|||++|+++++.....|- .....+
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i----~v~~~~----- 200 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFI----RVVGSE----- 200 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEE----EeehHH-----
Confidence 34688999999999887631 1134566889999999999999999987654321 111111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHH-HHHHHcCCCceEEEeCCCChh------------h----hhHhhcCCCC
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINM-LRIRLRRKKVLVVIDDVAHPD------------H----LRSLVGEPDW 315 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVLDdv~~~~------------~----~~~l~~~~~~ 315 (1278)
+.. ...+ ........ +...-...+.+|+|||++... . +..+......
T Consensus 201 -----l~~----~~~g-------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~ 264 (389)
T PRK03992 201 -----LVQ----KFIG-------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDG 264 (389)
T ss_pred -----HhH----hhcc-------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccc
Confidence 111 0000 00011111 111123467899999997641 1 2222222221
Q ss_pred C--CCCcEEEEEeCChhhhh-----hcCccceEecCCCCHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcCCCc
Q 000802 316 F--GPGSQIIITTRNEHLLK-----LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPF-EEYVELAESVVKYASGLP 384 (1278)
Q Consensus 316 ~--~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlP 384 (1278)
. ..+.+||.||....... ....+..++++..+.++..++|..++.+..... .+ ...+++.+.|.-
T Consensus 265 ~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 265 FDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVD----LEELAELTEGAS 337 (389)
T ss_pred cCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCCC
Confidence 1 23566777776543222 123456899999999999999998875432221 22 344555566643
No 97
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.00045 Score=82.59 Aligned_cols=197 Identities=18% Similarity=0.145 Sum_probs=103.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc----ccccEEee-echhhcc-cCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE----FDGSSFLA-DVREKCD-KEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~-~~~~~~~-~~~~~~ 256 (1278)
..+.+||.+...+.|...+..+ .-...+.++|++|+||||+|+.+++.+... +. .|-.. .+..... ....+.
T Consensus 12 ~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~-pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 12 TFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVE-PCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCC-CCcccHHHHHHhcCCCCccE
Confidence 3457999988888888777543 223557899999999999999998865321 00 00000 0000000 000000
Q ss_pred HHHHHHHHHHhCC-CCCCccchhhhHHHHHH-HHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhh
Q 000802 257 SLQKQLLSDLLKL-ADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHL 331 (1278)
Q Consensus 257 ~l~~~ll~~l~~~-~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v 331 (1278)
. +.. ......+.....+.+.. -..+++-++|+|+++... +.+.++..+....+...+|++|.+ ..+
T Consensus 90 --------e-l~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl 160 (472)
T PRK14962 90 --------E-LDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKV 160 (472)
T ss_pred --------E-EeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhh
Confidence 0 000 00000001111111110 122456799999997653 355555554433344555544443 333
Q ss_pred hhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCC-chHHHHHHh
Q 000802 332 LKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGL-PLALKVLGS 392 (1278)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~lg~ 392 (1278)
... ......+++.+++.++....+.+.+.......+ .+....|+++++|. +.|+..+-.
T Consensus 161 ~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 161 PPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred hHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 322 223358899999999999998887643322222 25567788877654 566666644
No 98
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.94 E-value=0.00015 Score=86.59 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=97.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccc--cEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
...+.|+|..|.|||+|++++++.+....+. .+++. ...+...+...+... ....+.++
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~--------~~~~~~~~ 201 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKT--------HKEIEQFK 201 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHh--------hhHHHHHH
Confidence 3568899999999999999999876543322 23332 233334443332110 01223344
Q ss_pred HHHcCCCceEEEeCCCChh---h-hhHhhcCCCC-CCCCcEEEEEeCCh---------hhhhhcCccceEecCCCCHHHH
Q 000802 286 IRLRRKKVLVVIDDVAHPD---H-LRSLVGEPDW-FGPGSQIIITTRNE---------HLLKLHRVRKVYKLEALTYDEA 351 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea 351 (1278)
+.++ ..-+||+||+.... . .+.+...+.. ...|..||+|+... .+.......-++.+++++.++.
T Consensus 202 ~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r 280 (450)
T PRK14087 202 NEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTA 280 (450)
T ss_pred HHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHH
Confidence 4444 34588999996542 1 2233222211 13455788886642 2222233345788999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhh
Q 000802 352 FRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSF 393 (1278)
Q Consensus 352 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~ 393 (1278)
.+++.+++-.......-..++..-|++.++|.|-.+..+...
T Consensus 281 ~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 281 TAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 999998874322101122467888999999999766655433
No 99
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.94 E-value=8.2e-05 Score=77.46 Aligned_cols=176 Identities=24% Similarity=0.288 Sum_probs=94.7
Q ss_pred CCCcccchHHHHHHHHHhhhc---CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
.-++|||.+.-++.+.-++.. ..+...-+.+||++|.||||||..+++.....|.. ... ...++.+++.
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~---~sg--~~i~k~~dl~--- 93 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKI---TSG--PAIEKAGDLA--- 93 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEE---EEC--CC--SCHHHH---
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEe---ccc--hhhhhHHHHH---
Confidence 456899999999887766642 34556778899999999999999999988776631 110 0111111111
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCCC--------CCCCc---------
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPDW--------FGPGS--------- 320 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~--------~~~gs--------- 320 (1278)
..+. .+ +++-+|.+|.+.... +-+.|.+.... .++++
T Consensus 94 ----------------------~il~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~ 149 (233)
T PF05496_consen 94 ----------------------AILT-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPP 149 (233)
T ss_dssp ----------------------HHHH-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE---
T ss_pred ----------------------HHHH-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCC
Confidence 1111 12 245577889997653 22222221110 12222
Q ss_pred --EEEEEeCChhhhhhcC--ccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHh
Q 000802 321 --QIIITTRNEHLLKLHR--VRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGS 392 (1278)
Q Consensus 321 --~IIiTTR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~ 392 (1278)
-|=-|||...+..-.. ..-+.+++..+.+|-.++..+.+..-... -..+.+.+|++++.|-|--..-+-.
T Consensus 150 FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~--i~~~~~~~Ia~rsrGtPRiAnrll~ 223 (233)
T PF05496_consen 150 FTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE--IDEDAAEEIARRSRGTPRIANRLLR 223 (233)
T ss_dssp -EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E--E-HHHHHHHHHCTTTSHHHHHHHHH
T ss_pred ceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHhcCCChHHHHHHHH
Confidence 2335788654433222 12356899999999999998877443322 2347899999999999964444333
No 100
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.93 E-value=0.00021 Score=75.73 Aligned_cols=262 Identities=20% Similarity=0.246 Sum_probs=142.7
Q ss_pred CCCcccchHHHHHHHHHhhhc---CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDT---RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
.-..|||.+.-.+++.-.+.. .....--+.++|++|.||||||.-+++.+...+... ......+.+++..++
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t-----sGp~leK~gDlaaiL 98 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT-----SGPALEKPGDLAAIL 98 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec-----ccccccChhhHHHHH
Confidence 446799999998888877753 334566789999999999999999999886543311 112222333222221
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhh-hhHhh-cCCCC--------CCCCcEE-------
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDH-LRSLV-GEPDW--------FGPGSQI------- 322 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-~~~l~-~~~~~--------~~~gs~I------- 322 (1278)
. . | .+.=++.+|.+..... .++++ +.... .|+++|.
T Consensus 99 t----~----------------------L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 99 T----N----------------------L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred h----c----------------------C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 1 1 1 1223455566654321 11111 11111 1344443
Q ss_pred ----EEEeCChhhhhhc--CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcC
Q 000802 323 ----IITTRNEHLLKLH--RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLFG 396 (1278)
Q Consensus 323 ----IiTTR~~~v~~~~--~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~ 396 (1278)
=-|||...+..-. ...-+.+++--+.+|-.++..+.+..-.-. -..+.+.+|+++..|-|--..-+-+..+
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~--i~~~~a~eIA~rSRGTPRIAnRLLrRVR- 228 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE--IDEEAALEIARRSRGTPRIANRLLRRVR- 228 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC--CChHHHHHHHHhccCCcHHHHHHHHHHH-
Confidence 2588876543322 122366888889999999998887322211 2236788999999999953333322221
Q ss_pred CCHHHHHHHHHH--HhcCCChhHHHHHHhcccCCcHHHHHHHHHhhcccCCCC--hHHHHHHHhhCCCCh-hHHHHHHHh
Q 000802 397 RAVHEWTSALER--IKRDPEYEILSILQISFDGLKEVEKKIFLDVVCFFKGRK--RDYVSKILKSCDFDP-VIGIAVLIE 471 (1278)
Q Consensus 397 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~sy~~L~~~~k~~fl~la~f~~~~~--~~~l~~~~~~~~~~~-~~~i~~L~~ 471 (1278)
++..+-.. +...........|.+-=.+|+..+++.+..+.-.+.|-+ .+.+...+..+.... +..--.|+.
T Consensus 229 ----Dfa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 229 ----DFAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred ----HHHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 11111000 000001223445555556788888877776665554443 344444433221111 223346888
Q ss_pred ccccceeCCCeE
Q 000802 472 KSLLTVDGANRL 483 (1278)
Q Consensus 472 ~~Li~~~~~~~~ 483 (1278)
.++|+....+++
T Consensus 305 ~gfi~RTpRGR~ 316 (332)
T COG2255 305 QGFIQRTPRGRI 316 (332)
T ss_pred hchhhhCCCcce
Confidence 888887766654
No 101
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=4.9e-07 Score=94.99 Aligned_cols=175 Identities=23% Similarity=0.251 Sum_probs=77.4
Q ss_pred chhhcccCcccc--cccccccCCCCccEEEeeCCCCCCCcccccccCcccccccccCccCCcccc--ccccCCCCCCEEE
Q 000802 720 LRELLLDETDIK--EIPRSIGHLSGLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFP--QIVTSMEDLSELY 795 (1278)
Q Consensus 720 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p--~~~~~~~~L~~L~ 795 (1278)
|++|+|+...|+ .+..-+..+.+|+.|.|.++.....+...+.+-.+|+.|+|+.|+...... -.+.+++.|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 444444444433 233333444444444444444444444444444445555555544443221 2334444445555
Q ss_pred ccCCCCcc--cCccc-cCCCCCCEEeecCCCCC---CcccccccCCCCCCEEEecCCCCchh-hhhhhcCCCCCceeecC
Q 000802 796 LDGTSITE--VPSSI-ELLTGLELLTLKGCKNL---TRLSSSINGLKSLKTLNLSGCSKLEN-VLETLGQVESSEQLDKS 868 (1278)
Q Consensus 796 L~~~~l~~--lp~~l-~~l~~L~~L~L~~~~~l---~~l~~~~~~l~sL~~L~l~~c~~l~~-~~~~l~~l~~L~~L~L~ 868 (1278)
|+.|.+.. +...+ .--++|+.|+|++|... ..+..-...+|+|.+|++++|..+.. ....+-+++.|++|.++
T Consensus 267 lsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSls 346 (419)
T KOG2120|consen 267 LSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLS 346 (419)
T ss_pred chHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehh
Confidence 54443331 11111 11234555555554321 11122223455666666665554432 33445555566666655
Q ss_pred CCcccC--CCccccccCCCceeecCCCC
Q 000802 869 GTTIKR--PSPNIFLMKNFKALSFCGCN 894 (1278)
Q Consensus 869 ~n~i~~--~~~~~~~l~~L~~L~l~~c~ 894 (1278)
.|..-. ....+...++|.+|++.||-
T Consensus 347 RCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 347 RCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhcCCChHHeeeeccCcceEEEEecccc
Confidence 553221 11234556667777766664
No 102
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.93 E-value=0.00047 Score=82.15 Aligned_cols=181 Identities=18% Similarity=0.184 Sum_probs=99.7
Q ss_pred CCcccchHHHH--HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc--cEEeeechhhcccCCCHHHHH
Q 000802 184 PKELVGIESRL--EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 184 ~~~~vGr~~~~--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
...++|..... ..+..+..........+.|+|..|+|||+||+++++.+..+... .+++. .....
T Consensus 110 d~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~ 178 (405)
T TIGR00362 110 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFT 178 (405)
T ss_pred cccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHH
Confidence 33456755543 22333332222224568899999999999999999987665432 23332 22222
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh---h-hhHhhcCCCC-CCCCcEEEEEeCCh-hh--
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD---H-LRSLVGEPDW-FGPGSQIIITTRNE-HL-- 331 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~---~-~~~l~~~~~~-~~~gs~IIiTTR~~-~v-- 331 (1278)
..+...+... ....+.+.+++ .-+|||||++... . .+.+...+.. ...+..+|||+... ..
T Consensus 179 ~~~~~~~~~~----------~~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 179 NDFVNALRNN----------KMEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred HHHHHHHHcC----------CHHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 3333332211 12334444433 3488999997532 1 1222222111 12355677777642 11
Q ss_pred ------hhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHH
Q 000802 332 ------LKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALK 388 (1278)
Q Consensus 332 ------~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 388 (1278)
...+....++++++.+.++..+++.+++-......+ .++...|++.+.|..-.+.
T Consensus 248 ~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 248 GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELP--DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHHHH
Confidence 112223346899999999999999988754332222 3667778888887765433
No 103
>PLN03150 hypothetical protein; Provisional
Probab=97.91 E-value=1.5e-05 Score=99.66 Aligned_cols=49 Identities=33% Similarity=0.348 Sum_probs=19.1
Q ss_pred ccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCchhhhhhh
Q 000802 808 IELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKLENVLETL 856 (1278)
Q Consensus 808 l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l~~~~~~l 856 (1278)
+..+++|+.|+|++|.....+|..++++++|+.|+|++|.....+|..+
T Consensus 462 ~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 462 LGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred HhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 3333333333333333333333333444444444444444333333333
No 104
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00013 Score=89.12 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=108.5
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc---ccEEe-eechhhcc-cCCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD---GSSFL-ADVREKCD-KEGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~-~~~~~~~~-~~~~~~~ 257 (1278)
....+||.+.-++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... ..|-. ..+++... .+.++..
T Consensus 14 ~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ie 92 (647)
T PRK07994 14 TFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIE 92 (647)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCcee
Confidence 45679999999999998886532 2345789999999999999999876532110 00000 00000000 0000000
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhh
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLK 333 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~ 333 (1278)
+-........++.+..+.+... ..+++-++|+|+++... ..+.|+..+..-.+..++|++|.+. .+..
T Consensus 93 --------idaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 93 --------IDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred --------ecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0000001111111112221111 23566799999998654 4666655544334566666655554 3332
Q ss_pred h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 334 L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 334 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
. ......+.+.+++.++..+.+.+.+-...... ..+....|++.++|.+--+..
T Consensus 165 TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~--e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 165 TILSRCLQFHLKALDVEQIRQQLEHILQAEQIPF--EPRALQLLARAADGSMRDALS 219 (647)
T ss_pred HHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 2 22346899999999999999987653222211 135567889999998864333
No 105
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.89 E-value=0.00029 Score=84.08 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=90.9
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccc-c-EEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG-S-SFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~-~-~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
..-+.|+|.+|+|||+||+++++.+...++. . .|+. .......+...+.. . ....++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~------~----~~~~f~ 188 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKE------G----KLNEFR 188 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhc------c----cHHHHH
Confidence 4458999999999999999999987665432 3 3332 22233333333211 0 122344
Q ss_pred HHHcCCCceEEEeCCCChh---hh-hHhhcCCC-CCCCCcEEEEEeC-Chhhhh--------hcCccceEecCCCCHHHH
Q 000802 286 IRLRRKKVLVVIDDVAHPD---HL-RSLVGEPD-WFGPGSQIIITTR-NEHLLK--------LHRVRKVYKLEALTYDEA 351 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~-~~~~gs~IIiTTR-~~~v~~--------~~~~~~~~~l~~L~~~ea 351 (1278)
+..+.+.-+|++||++... .. +.+...+. ....|..||+||. ...-.. .+....++++++.+.++-
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 4444456689999997431 11 12211111 0123457888874 332211 123345789999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 352 FRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 352 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
.+++.+.+-......+ .++...|++++.|.--.+
T Consensus 269 ~~IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 269 KKIARKMLEIEHGELP--EEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHhccccCHHHH
Confidence 9999888743322222 356777888877765433
No 106
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00024 Score=82.74 Aligned_cols=188 Identities=14% Similarity=0.086 Sum_probs=104.3
Q ss_pred CcccchHHHHHHHHHhhhcCCC--------CeeEEEEEecCCCchhHHHHHHHHHhhccccc--cEEee-echhhc-ccC
Q 000802 185 KELVGIESRLEKLKVHMDTRSN--------DVRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SSFLA-DVREKC-DKE 252 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~-~~~~~~-~~~ 252 (1278)
+.++|.+..++.|...+..+.. -.+.+.++|+.|+||||+|+.++..+--.... .|=.. .++... ..+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 4689999999999998875421 34668899999999999999998765322110 00000 000000 000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEE
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIIT 325 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiT 325 (1278)
.++.. ... +.....+++ +..+.+.+ .+++-++|+|+++... ....|+..+....++..+|++
T Consensus 85 pD~~~---------i~~-~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 85 PDVRV---------VAP-EGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred CCEEE---------ecc-ccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 00000 000 000000111 11122222 2345588889998764 344454444333456767666
Q ss_pred eCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 326 TRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 326 TR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
|.+. .+... ......+.+.+++.++..+.+..... .. .+.+..++..++|.|.....+
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~----~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG----VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC----CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 6653 33322 22346889999999999998875421 11 245778899999999755444
No 107
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00025 Score=83.87 Aligned_cols=196 Identities=15% Similarity=0.162 Sum_probs=106.0
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--ccccEEeeechhhcccCCCHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
..+.++|.+..++.|..++..+ .-...+.++|+.|+||||+|+.+++.+... +...-|.....+..... ..-+
T Consensus 14 ~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c----~~c~ 88 (397)
T PRK14955 14 KFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC----ESCR 88 (397)
T ss_pred cHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC----HHHH
Confidence 3457899998888888888643 223457899999999999999999866321 10000000000000000 0000
Q ss_pred HHHHH----HhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CC
Q 000802 261 QLLSD----LLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RN 328 (1278)
Q Consensus 261 ~ll~~----l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~ 328 (1278)
.+... +...........++. ..+.+.+ .+++-++|+|+++... .++.+...+....+.+.+|++| +.
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~I-r~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDI-RLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHH-HHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 00000 000000000001111 1222222 2455688999997653 4666665554444566766555 43
Q ss_pred hhhhhhc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 329 EHLLKLH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 329 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
..+.... .....+++.+++.++..+.+...+-...... ..+.+..+++.++|.+--
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i--~~~al~~l~~~s~g~lr~ 224 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISV--DADALQLIGRKAQGSMRD 224 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 4443321 1234788999999999888877663222111 135678899999998753
No 108
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00069 Score=80.57 Aligned_cols=191 Identities=17% Similarity=0.159 Sum_probs=105.8
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
..+.+||.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+--.+.... ...+ .-..-..+
T Consensus 11 ~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~---------~pCg-~C~~C~~i 79 (491)
T PRK14964 11 SFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPTS---------DPCG-TCHNCISI 79 (491)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC---------CCcc-ccHHHHHH
Confidence 45678999999998888876432 2357889999999999999999875421110000 0000 00000000
Q ss_pred HHH----Hh--C-CCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeC-Chhh
Q 000802 263 LSD----LL--K-LADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTR-NEHL 331 (1278)
Q Consensus 263 l~~----l~--~-~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR-~~~v 331 (1278)
... +. . .......++.+.++..... ..+++-++|+|+++... ..+.|+..+..-.+..++|++|. ...+
T Consensus 80 ~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl 159 (491)
T PRK14964 80 KNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKI 159 (491)
T ss_pred hccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHH
Confidence 000 00 0 0000001111111111110 12456689999997653 35666555544456677776654 3344
Q ss_pred hhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 332 LKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
... ......+++.+++.++..+.+.+.+-......+ .+....|++.++|.+-.
T Consensus 160 ~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~--~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 160 PVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHD--EESLKLIAENSSGSMRN 213 (491)
T ss_pred HHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 332 223457899999999999999887754332222 25567889999987753
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00032 Score=86.13 Aligned_cols=195 Identities=16% Similarity=0.181 Sum_probs=104.5
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--ccccEEeeechhhcccCCCHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGSSFLADVREKCDKEGSVISLQK 260 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~~~~~~~~~~~~~~~~~~~l~~ 260 (1278)
..+.+||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+--. .....|...+.+..... ..-+
T Consensus 14 ~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C----~sC~ 88 (620)
T PRK14954 14 KFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC----ESCR 88 (620)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC----HHHH
Confidence 4467899999999998888543 223558899999999999999999866321 11011111110100000 0000
Q ss_pred HHHHH----HhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CC
Q 000802 261 QLLSD----LLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RN 328 (1278)
Q Consensus 261 ~ll~~----l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~ 328 (1278)
.+... +...........++.. .+.+.+ .+++-++|+|+++... ..+.|+..+..-.+.+.+|++| +.
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir-~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIR-QLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHH-HHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 00000 0000000000111211 122222 2455588999997764 3555555444333455655544 44
Q ss_pred hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 329 EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 329 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
..+... ......+++.+++.++....+.+.+-......+ .+.+..+++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~--~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQID--ADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHhCCCHH
Confidence 444332 234568999999999998888776533221111 2567788999999654
No 110
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.83 E-value=0.00018 Score=82.73 Aligned_cols=196 Identities=17% Similarity=0.104 Sum_probs=109.5
Q ss_pred CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc----ccccEEeeechhhcccCCCHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE----FDGSSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~~~~~~~~~~~~~~~~~~~~~ 257 (1278)
.....++|.+...+.+...+..+ .-...+.|+|+.|+||||+|+.+++.+-.. +....... ..+ -..
T Consensus 20 ~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~-------~~~-~c~ 90 (351)
T PRK09112 20 SENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD-------PDP-ASP 90 (351)
T ss_pred CchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC-------CCC-CCH
Confidence 34567999999999999988654 234568899999999999999999866431 11110000 000 000
Q ss_pred HHHHHHHH-------HhCCCCCC------ccchhhhHHHHHHHHc-----CCCceEEEeCCCChhh--hhHhhcCCCCCC
Q 000802 258 LQKQLLSD-------LLKLADNS------IRNVYDGINMLRIRLR-----RKKVLVVIDDVAHPDH--LRSLVGEPDWFG 317 (1278)
Q Consensus 258 l~~~ll~~-------l~~~~~~~------~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~~ 317 (1278)
..+.+... +....+.. .-.+++ +..+.+.+. +++-++|+|+++.... .+.++..+..-.
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp 169 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPP 169 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCC
Confidence 11111111 00000000 001111 223333332 4566899999987643 444444433223
Q ss_pred CCcEEE-EEeCChhhhhhc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 318 PGSQII-ITTRNEHLLKLH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 318 ~gs~II-iTTR~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
....+| +|++...+.... .....+.+.+++.++..+++...+.... . ..+....+++.++|.|.....+.
T Consensus 170 ~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~--~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 170 ARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--S--DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--C--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 445544 444443343221 2235899999999999999987432211 1 12456789999999998655443
No 111
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.0001 Score=88.25 Aligned_cols=192 Identities=18% Similarity=0.182 Sum_probs=107.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc-------ccEEee-echhhccc-CC
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-------GSSFLA-DVREKCDK-EG 253 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-------~~~~~~-~~~~~~~~-~~ 253 (1278)
....+||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-..-. ..|... .+...... +.
T Consensus 19 ~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~ 97 (507)
T PRK06645 19 NFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHP 97 (507)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCC
Confidence 4457899999999888877543 22457889999999999999999986632110 001100 00000000 00
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEE-EeCCh
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIII-TTRNE 329 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIi-TTR~~ 329 (1278)
++.. +-........++.+.++.... -+.+++-++|+|+++.. ..++.|...+....+.+.+|+ ||+..
T Consensus 98 Dv~e--------idaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 98 DIIE--------IDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred cEEE--------eeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 0000 000000011111111111111 12356778999999875 346677655554345666654 55544
Q ss_pred hhhhhc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 330 HLLKLH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 330 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
.+.... .....+++.+++.++..+.+.+.+-......+ .+....|++.++|.+-
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie--~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD--IEALRIIAYKSEGSAR 224 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 444332 23357899999999999999888754332222 2456778889999774
No 112
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=97.82 E-value=3e-05 Score=75.95 Aligned_cols=89 Identities=21% Similarity=0.396 Sum_probs=47.6
Q ss_pred ccEEEcccccccccchHHHHHHHHHhC-------CCce-e---------ecCccccCCCCChHHHHHHHHhhceeeEEec
Q 000802 14 YDVFLSFRGEDTRKSFTNHLYAALKNK-------GIYV-F---------RDDKELEKGGSISPGLLKVIEESRISVIVLS 76 (1278)
Q Consensus 14 ~dvFis~~~~d~~~~~~~~l~~~L~~~-------g~~~-~---------~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s 76 (1278)
|.|||||++.|. ......|...+... .+.. | .+..+....+.|...|.++|.+|.++||++|
T Consensus 1 ~~vFIS~~~~d~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~I~~~i~~s~~~IVLig 79 (130)
T PF08937_consen 1 YKVFISYSHDDD-DWYYDQLKEWLENSYEIPRDKNFDFRFYDVSKWEPIRSRDDDSSSEYIKRKIRERIKNSSVTIVLIG 79 (130)
T ss_dssp ----------TH-H-HHHHHHHHHHH-------TTSS--BT---TTT---TTS---TTTTHHHHHHHHHHTEEEEEEE--
T ss_pred CCccccccccCc-HHHHHHHHHHhccccccccccccccCcccccccCcccCccccchHHHHHHHHHHHHhcCCEEEEEeC
Confidence 679999999985 23677777777763 2211 1 2222233445789999999999999999999
Q ss_pred cccccchhhHHHHHHHHHhhhcCCceEeEE
Q 000802 77 KNYASSTWCLDELVKIVECKNRENQILPIF 106 (1278)
Q Consensus 77 ~~y~~s~~c~~El~~~~~~~~~~~~v~pv~ 106 (1278)
++-..|.|+-.|+..+++.... |+.|.
T Consensus 80 ~~T~~s~wV~~EI~~A~~~~~~---Ii~V~ 106 (130)
T PF08937_consen 80 PNTAKSKWVNWEIEYALKKGKP---IIGVY 106 (130)
T ss_dssp TT----HHHHHHHHHHTTT------EEEEE
T ss_pred CCcccCcHHHHHHHHHHHCCCC---EEEEE
Confidence 9999999999999998863322 66653
No 113
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.82 E-value=0.00058 Score=83.52 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=106.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc----------cccEEeeechhhcc-c
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF----------DGSSFLADVREKCD-K 251 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f----------~~~~~~~~~~~~~~-~ 251 (1278)
..+++||-+.-++.|..++..+ .-...+.++|+.|+||||+|+.+++.+--.- ++..- ..++.... .
T Consensus 14 ~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C-~~C~~i~~g~ 91 (618)
T PRK14951 14 SFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC-QACRDIDSGR 91 (618)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc-HHHHHHHcCC
Confidence 3457899888888899888653 2345678999999999999999987653110 00000 00010000 0
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH--------cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcE
Q 000802 252 EGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL--------RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQ 321 (1278)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--------~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 321 (1278)
+.++ ....... ...++.+++.+ .++.-++|||+|+... .++.++..+..-....+
T Consensus 92 h~D~-----------~eldaas----~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~ 156 (618)
T PRK14951 92 FVDY-----------TELDAAS----NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLK 156 (618)
T ss_pred CCce-----------eecCccc----ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeE
Confidence 0000 0000000 01122222221 2345589999998753 46666665554345666
Q ss_pred EEEEeCC-hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 322 IIITTRN-EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 322 IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
+|++|.+ ..+... ......++++.++.++..+.+.+.+-......+ .+....|++.++|.+--+
T Consensus 157 fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie--~~AL~~La~~s~GslR~a 222 (618)
T PRK14951 157 FVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAE--PQALRLLARAARGSMRDA 222 (618)
T ss_pred EEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHH
Confidence 7666544 333322 223468899999999999999877643322222 256778888999877543
No 114
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.80 E-value=1.6e-05 Score=66.23 Aligned_cols=55 Identities=42% Similarity=0.565 Sum_probs=48.9
Q ss_pred cEEEecCCCCCCCCcc-cccCCCCCCcEecCCCCcCcccch-hhcCCCCCCEeeccCCc
Q 000802 927 EKLDLSDCCLGEGAIP-TDIGNLCLLKELCLSGNNFVTLPA-SINSLLNLEELKLEDCK 983 (1278)
Q Consensus 927 ~~L~Ls~~~l~~~~lp-~~l~~l~sL~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 983 (1278)
+.|+|++|++.. +| ..+..+++|+.|+|++|+++.+|+ .+..+++|+.|++++|+
T Consensus 4 ~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 4 ESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp SEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 999999999853 66 578999999999999999999864 77999999999999986
No 115
>PF14516 AAA_35: AAA-like domain
Probab=97.79 E-value=0.0048 Score=70.98 Aligned_cols=204 Identities=12% Similarity=0.180 Sum_probs=114.8
Q ss_pred CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEeeechhhcc-cCCCHHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCD-KEGSVISLQ 259 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~-~~~~~~~l~ 259 (1278)
...+.+|+|...-+++.+.+.. ....+.|.|+-.+|||+|...+.+....+ |. .+++ ++..... ...+.....
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~---~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~i-d~~~~~~~~~~~~~~f~ 82 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQ---PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYI-DLQQLGSAIFSDLEQFL 82 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhc---CCCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEE-EeecCCCcccCCHHHHH
Confidence 3556788999555555555543 23588999999999999999998877544 33 2333 3444222 112244444
Q ss_pred HHHHHHHhCCCCCC----------ccchhhhHHHHHHHH-c--CCCceEEEeCCCChhh----hhHhhcCCC-CC-----
Q 000802 260 KQLLSDLLKLADNS----------IRNVYDGINMLRIRL-R--RKKVLVVIDDVAHPDH----LRSLVGEPD-WF----- 316 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~----------~~~~~~~~~~l~~~L-~--~kr~LlVLDdv~~~~~----~~~l~~~~~-~~----- 316 (1278)
+.+...+...-... ..........+.+.+ . +++.+|++|+|+..-. ...+.+.+. |.
T Consensus 83 ~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~ 162 (331)
T PF14516_consen 83 RWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKN 162 (331)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhccc
Confidence 44444432221111 111122233444432 2 5899999999975432 111111100 00
Q ss_pred -C--CCcEEEEEe--CChhhhhh----cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 317 -G--PGSQIIITT--RNEHLLKL----HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 317 -~--~gs~IIiTT--R~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
. ..-++++.. +....... ..+...++|++++.+|...|..++-..- .+ ...+++...+||+|--+
T Consensus 163 ~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~~---~~~~~l~~~tgGhP~Lv 236 (331)
T PF14516_consen 163 NPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---SQ---EQLEQLMDWTGGHPYLV 236 (331)
T ss_pred CcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---CH---HHHHHHHHHHCCCHHHH
Confidence 0 111222221 21111111 1234578999999999999998774321 11 23889999999999999
Q ss_pred HHHHhhhcC
Q 000802 388 KVLGSFLFG 396 (1278)
Q Consensus 388 ~~lg~~L~~ 396 (1278)
..++..+..
T Consensus 237 ~~~~~~l~~ 245 (331)
T PF14516_consen 237 QKACYLLVE 245 (331)
T ss_pred HHHHHHHHH
Confidence 999888865
No 116
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.79 E-value=0.00037 Score=84.12 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=99.9
Q ss_pred cccchHHH--HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccccc--EEeeechhhcccCCCHHHHHHH
Q 000802 186 ELVGIESR--LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS--SFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 186 ~~vGr~~~--~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~--~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
.++|...+ ...+..+....+.....+.|+|..|+|||+||+++++.+..+++.. .|+. ...+...
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~ 192 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTND 192 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHH
Confidence 34564443 2333333332223345688999999999999999999887765432 2332 2222233
Q ss_pred HHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----hhhHhhcCCCC-CCCCcEEEEEeCChh------
Q 000802 262 LLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----HLRSLVGEPDW-FGPGSQIIITTRNEH------ 330 (1278)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~l~~~~~~-~~~gs~IIiTTR~~~------ 330 (1278)
+...+.. .....+++.++ +.-+|||||++... ..+.+...+.. ...|..||||+....
T Consensus 193 ~~~~~~~----------~~~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l 261 (450)
T PRK00149 193 FVNALRN----------NTMEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGL 261 (450)
T ss_pred HHHHHHc----------CcHHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHH
Confidence 3333211 01233444444 35589999996431 11222221110 123456788776431
Q ss_pred ---hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 331 ---LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 331 ---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
+...+....++++++.+.++..+++.+++-......+ .++...|++.+.|..-.+
T Consensus 262 ~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 262 EERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLP--DEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHcCcCCCHHHH
Confidence 1222333457899999999999999988754322222 256777888888876543
No 117
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.0011 Score=75.22 Aligned_cols=204 Identities=19% Similarity=0.211 Sum_probs=120.3
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc--cEEeeechhhcccCCCHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~ 257 (1278)
..+..++||+.+++.+.+++.. +.+..+-+-|.|-+|.|||.+...++......... .+++. +... +....
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in-c~sl----~~~~a 221 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN-CTSL----TEASA 221 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe-eccc----cchHH
Confidence 4567899999999999999873 45566788899999999999999999877554443 23433 2221 11455
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCC--CceEEEeCCCChhh--hhHhhcCCCCC-CCCcEEEEEeCCh---
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRK--KVLVVIDDVAHPDH--LRSLVGEPDWF-GPGSQIIITTRNE--- 329 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~IIiTTR~~--- 329 (1278)
+...+...+.......... .+..+.+.....+. .+|+|+|.+|.... -..+...+.|- -+++|+|+.---.
T Consensus 222 iF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhh
Confidence 6666666654333222222 34455566666553 58999999876542 22222223332 2566666533211
Q ss_pred ---hhhhh-----cCccceEecCCCCHHHHHHHHHHhhcCCCCC---ChhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 330 ---HLLKL-----HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP---FEEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 330 ---~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~---~~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
..+.. .-....+..++-+.++-.++|..+.-..... +...+-.|++++.-.|.+--|+.+.-
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R 373 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCR 373 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence 11111 1123567889999999999999887332211 12233344444444454555554443
No 118
>PRK06620 hypothetical protein; Validated
Probab=97.78 E-value=0.00028 Score=75.46 Aligned_cols=132 Identities=12% Similarity=0.054 Sum_probs=76.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL 288 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1278)
+.+.|||++|+|||+|++++++.... .++.... . .. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~~--------~---~~-------------------------~~~ 83 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDIF--------F---NE-------------------------EIL 83 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchhh--------h---ch-------------------------hHH
Confidence 56899999999999999987764421 2221000 0 00 011
Q ss_pred cCCCceEEEeCCCChhh--hhHhhcCCCCCCCCcEEEEEeCChhh-------hhhcCccceEecCCCCHHHHHHHHHHhh
Q 000802 289 RRKKVLVVIDDVAHPDH--LRSLVGEPDWFGPGSQIIITTRNEHL-------LKLHRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 289 ~~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
+..-++++||++..++ +-.+..... ..|..||+|++.... ...+....++++++++.++..+++.+.+
T Consensus 84 -~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 84 -EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred -hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHH
Confidence 1235788999975432 222211111 346789999875322 2223334589999999999888887776
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 360 FDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 360 f~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
-...-..+ .++..-|++++.|.--+
T Consensus 161 ~~~~l~l~--~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 161 SISSVTIS--RQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHcCCCCC--HHHHHHHHHHccCCHHH
Confidence 42211111 25666677777665443
No 119
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00091 Score=80.89 Aligned_cols=193 Identities=14% Similarity=0.132 Sum_probs=103.4
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--cc---ccEEeeechhhcc-cCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FD---GSSFLADVREKCD-KEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~---~~~~~~~~~~~~~-~~~~~~ 256 (1278)
..+.+||-+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. .. +... ..++.... .+.++.
T Consensus 14 ~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C-~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 14 CFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDC-ENCREIDEGRFPDLF 91 (509)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCC-HHHHHHhcCCCceEE
Confidence 34579999999999999986432 23467899999999999999999765221 00 0000 00000000 000000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCCh-hhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNE-HLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~-~v~ 332 (1278)
.+ -........++.+..+.+... ..++.-++|+|+|+.. +..+.++..+....+.+++|++|.+. .+.
T Consensus 92 ei--------daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~ 163 (509)
T PRK14958 92 EV--------DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLP 163 (509)
T ss_pred EE--------cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhch
Confidence 00 000000011111111111110 1245568999999875 34555655544434567777766543 222
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal 387 (1278)
.. ......+++++++.++..+.+.+.+-......+ .+....|++.++|.+.-+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~--~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 164 VTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFE--NAALDLLARAANGSVRDA 217 (509)
T ss_pred HHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHH
Confidence 11 122346789999999988777665533222222 245677888899987533
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.77 E-value=0.00055 Score=80.58 Aligned_cols=177 Identities=17% Similarity=0.196 Sum_probs=102.2
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--------ccccEEeeechhhcccCCCH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--------FDGSSFLADVREKCDKEGSV 255 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--------f~~~~~~~~~~~~~~~~~~~ 255 (1278)
-+.++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+.+.+... |...++- +.. .. ...+
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~~-~~~~ 90 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-AS-NNSV 90 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-cc-CCCH
Confidence 456899999999999988653 234578899999999999999998866431 1111111 100 00 0001
Q ss_pred HHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CChhhh
Q 000802 256 ISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RNEHLL 332 (1278)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~~~v~ 332 (1278)
.. .+++..++.. .-..+++-++|+|+++... .++.+...+......+.+|++| +...+.
T Consensus 91 ~~-i~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 DD-IRNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred HH-HHHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 11 1111111100 0012345589999987543 3555544333223445566555 333332
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
.. ......+++.+++.++....+...+.......+ .+.+..+++.++|.+-
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFE--DDALHIIAQKADGALR 204 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 22 222347899999999999888877644332222 2567788888998765
No 121
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00082 Score=81.94 Aligned_cols=201 Identities=15% Similarity=0.114 Sum_probs=109.0
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc-----cccEEeeechhhcccCCCHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-----DGSSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~~~~~~~ 257 (1278)
..+.+||.+..++.|..++..+ .-...+.++|+.|+||||+|+.++..+.... ++... ..++......+.-..
T Consensus 11 ~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C-~~C~~i~~~~~~~~d 88 (584)
T PRK14952 11 TFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVC-ESCVALAPNGPGSID 88 (584)
T ss_pred cHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccccc-HHHHHhhcccCCCce
Confidence 3457899999999999998653 2334578999999999999999997653211 00000 000000000000000
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeC-Chhhhh
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTR-NEHLLK 333 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR-~~~v~~ 333 (1278)
+. .+-........++.+..+.+... ..+++-++|+|+++.. ...+.|+..+........+|++|. ...+..
T Consensus 89 vi-----eidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~ 163 (584)
T PRK14952 89 VV-----ELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLP 163 (584)
T ss_pred EE-----EeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHH
Confidence 00 00000000111111111111111 1245568999999765 346666655554445666665554 444433
Q ss_pred h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHHHh
Q 000802 334 L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVLGS 392 (1278)
Q Consensus 334 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~lg~ 392 (1278)
. ......+++..++.++..+.+.+.+-......+ .+....|++.++|.+- |+..+-.
T Consensus 164 TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~--~~al~~Ia~~s~GdlR~aln~Ldq 222 (584)
T PRK14952 164 TIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVD--DAVYPLVIRAGGGSPRDTLSVLDQ 222 (584)
T ss_pred HHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2 223468999999999999888776643332222 2456778889999774 4444433
No 122
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.00019 Score=79.79 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=80.3
Q ss_pred cccchHHHHHHHHHhhhc-------------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccc--cccEEeeechhhcc
Q 000802 186 ELVGIESRLEKLKVHMDT-------------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVREKCD 250 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~ 250 (1278)
.++|.+...++|.+.... ..+...-+.++|++|+||||+|+.+++.+...- ....++. +.
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~---- 81 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE---- 81 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec----
Confidence 478888777666543211 122345678999999999999999987653211 1112221 11
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc-CCCceEEEeCCCCh----------hhhhHhhcCCCCCCCC
Q 000802 251 KEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR-RKKVLVVIDDVAHP----------DHLRSLVGEPDWFGPG 319 (1278)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~----------~~~~~l~~~~~~~~~g 319 (1278)
... +.....+. ....+++.++ ...-+|++|+++.. +.++.+..........
T Consensus 82 ----~~~----l~~~~~g~----------~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~ 143 (261)
T TIGR02881 82 ----RAD----LVGEYIGH----------TAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNE 143 (261)
T ss_pred ----HHH----hhhhhccc----------hHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCC
Confidence 001 11111110 0111222221 12358899999752 2445555544333333
Q ss_pred cEEEEEeCChhhhh------h--cCccceEecCCCCHHHHHHHHHHhhc
Q 000802 320 SQIIITTRNEHLLK------L--HRVRKVYKLEALTYDEAFRLLCLKAF 360 (1278)
Q Consensus 320 s~IIiTTR~~~v~~------~--~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1278)
..+|+++....... . -.....+++++++.+|..+++.+.+-
T Consensus 144 ~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 144 FVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred EEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 45556654332211 0 01234678999999999999987764
No 123
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.76 E-value=0.00027 Score=85.20 Aligned_cols=195 Identities=17% Similarity=0.149 Sum_probs=104.1
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
....++|.+..++.+...+..+ .-.+.+.++|+.|+||||+|+.+++.+...- |.. . ..... ....+.+
T Consensus 14 ~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~-~-~~Cg~----C~sCr~i 82 (605)
T PRK05896 14 NFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD-G-DCCNS----CSVCESI 82 (605)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC-C-CCCcc----cHHHHHH
Confidence 4457899999999999888543 2246788999999999999999998763210 000 0 00000 0000000
Q ss_pred HHH----H--hCC-CCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEe-CChhh
Q 000802 263 LSD----L--LKL-ADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITT-RNEHL 331 (1278)
Q Consensus 263 l~~----l--~~~-~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~v 331 (1278)
... + +.. ......++.+....+... ..+++=++|+|+++.. ..+..|+..+....+...+|++| ....+
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKI 162 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhh
Confidence 000 0 000 000001111111111110 1123446999999764 34555555433223455665555 43333
Q ss_pred hhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 332 LKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
... ......+++.+++.++....+...+-......+ .+.+..+++.++|.+- |+..+
T Consensus 163 l~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is--~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 163 PLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE--DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred hHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 322 223457899999999999888876643221111 2457788889998664 44443
No 124
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.75 E-value=0.00018 Score=84.62 Aligned_cols=153 Identities=18% Similarity=0.238 Sum_probs=89.1
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
..+.|.+.+++++.+.+.. +-...+-+.++|++|.|||++|+++++.....|-. +. ..+
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~-~se------ 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLR---VV-GSE------ 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Ee-cch------
Confidence 3568999999998887742 11234568899999999999999999977654411 11 001
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC-
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF- 316 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 316 (1278)
+ .... .+. ........+.....+.+.+|+||+++... .+..++..+..+
T Consensus 253 -L---~~k~----~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~ 318 (438)
T PTZ00361 253 -L---IQKY----LGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD 318 (438)
T ss_pred -h---hhhh----cch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc
Confidence 1 0000 000 00001112222234577889999875321 011222222111
Q ss_pred -CCCcEEEEEeCChhhhhh-----cCccceEecCCCCHHHHHHHHHHhhcC
Q 000802 317 -GPGSQIIITTRNEHLLKL-----HRVRKVYKLEALTYDEAFRLLCLKAFD 361 (1278)
Q Consensus 317 -~~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1278)
..+.+||.||.....+.. ...+..++++..+.++..++|..++.+
T Consensus 319 ~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 319 SRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred ccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 235678888875443322 234568899999999999999987643
No 125
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.74 E-value=0.00077 Score=81.39 Aligned_cols=153 Identities=15% Similarity=0.224 Sum_probs=89.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccc--cEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
...+.|+|..|.|||.|++++++.....+.. ++|+. ...+...+...+.. ...+.++
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~----------~~~~~f~ 372 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRD----------GKGDSFR 372 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHh----------ccHHHHH
Confidence 3458899999999999999999987654322 23333 23333333333211 0122344
Q ss_pred HHHcCCCceEEEeCCCChh---hh-hHhhcCCC-CCCCCcEEEEEeCCh---------hhhhhcCccceEecCCCCHHHH
Q 000802 286 IRLRRKKVLVVIDDVAHPD---HL-RSLVGEPD-WFGPGSQIIITTRNE---------HLLKLHRVRKVYKLEALTYDEA 351 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~~---~~-~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea 351 (1278)
+.++. -=+|||||++... .+ +.+...+. ....|..|||||+.. .+...+...-+++++..+.+.-
T Consensus 373 ~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR 451 (617)
T PRK14086 373 RRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETR 451 (617)
T ss_pred HHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHH
Confidence 44443 3588899996542 12 12222211 113456788888752 2223344456889999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc
Q 000802 352 FRLLCLKAFDTHKPFEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 352 ~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1278)
.+++.+++-...-..+ .+++.-|++++.+..
T Consensus 452 ~aIL~kka~~r~l~l~--~eVi~yLa~r~~rnv 482 (617)
T PRK14086 452 IAILRKKAVQEQLNAP--PEVLEFIASRISRNI 482 (617)
T ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHHhccCCH
Confidence 9999988754332222 356666666666554
No 126
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.73 E-value=0.0011 Score=79.03 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=84.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
...+.|+|+.|+|||+||+++++.+.......+++. ...+...+...+.. . ..+.++..
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~-~---------~~~~f~~~ 199 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRS-G---------EMQRFRQF 199 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhc-c---------hHHHHHHH
Confidence 356889999999999999999998765433334443 22222333333211 0 12234443
Q ss_pred HcCCCceEEEeCCCChhh----hhHhhcCCCC-CCCCcEEEEEeCC-hh--------hhhhcCccceEecCCCCHHHHHH
Q 000802 288 LRRKKVLVVIDDVAHPDH----LRSLVGEPDW-FGPGSQIIITTRN-EH--------LLKLHRVRKVYKLEALTYDEAFR 353 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~~----~~~l~~~~~~-~~~gs~IIiTTR~-~~--------v~~~~~~~~~~~l~~L~~~ea~~ 353 (1278)
++ ..-++++||+..... .+.+...+.. ...|..||+||.. .. +...+....++++++++.++..+
T Consensus 200 ~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~ 278 (445)
T PRK12422 200 YR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRS 278 (445)
T ss_pred cc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHH
Confidence 33 445888999865421 1122211110 1235678888854 21 12223334578999999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHcCCC
Q 000802 354 LLCLKAFDTHKPFEEYVELAESVVKYASGL 383 (1278)
Q Consensus 354 Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1278)
++.+++-......+ .++..-|+..+.|.
T Consensus 279 iL~~k~~~~~~~l~--~evl~~la~~~~~d 306 (445)
T PRK12422 279 FLERKAEALSIRIE--ETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHhcCCC
Confidence 99887743322111 24455555555544
No 127
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.0012 Score=80.25 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=109.3
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
..+.++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-......- ..+. .-...+.+
T Consensus 14 sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~------~pCg----~C~sC~~i 82 (624)
T PRK14959 14 TFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG------EPCN----TCEQCRKV 82 (624)
T ss_pred CHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCC------CCCc----ccHHHHHH
Confidence 3456889888888888888643 22467789999999999999999986632110000 0000 00000000
Q ss_pred HHH----HhCCCCCCccchhhhHHHHHHH-----HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCC-hh
Q 000802 263 LSD----LLKLADNSIRNVYDGINMLRIR-----LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRN-EH 330 (1278)
Q Consensus 263 l~~----l~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~ 330 (1278)
... +..........+++ +..+++. ..+++-+||+|+++.. +..+.|+..+..-.....+|++|.. ..
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 000 00000000000111 1112211 2356679999999765 3455665554432345666665554 34
Q ss_pred hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc-hHHHHHHhhh
Q 000802 331 LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP-LALKVLGSFL 394 (1278)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~lg~~L 394 (1278)
+... ......+++.+++.++..+.+...+.......+ .+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id--~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYD--PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4322 222357899999999999998876644332121 256778889999965 6777765544
No 128
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00052 Score=83.60 Aligned_cols=194 Identities=19% Similarity=0.149 Sum_probs=105.0
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc---ccEEe-eechhhcccCCCHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD---GSSFL-ADVREKCDKEGSVISL 258 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~---~~~~~-~~~~~~~~~~~~~~~l 258 (1278)
....+||.+.-++.+..++..+. -...+.++|+.|+||||+|+.++..+-.... ..|-. ..+....... .
T Consensus 14 ~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~--~--- 87 (527)
T PRK14969 14 SFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGR--F--- 87 (527)
T ss_pred cHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC--C---
Confidence 34578999999999998886432 2356689999999999999999976632110 00000 0000000000 0
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-h
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-H 330 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~ 330 (1278)
.++...........++. ..+.+.. .+++-++|+|+++... ..+.++..+......+.+|++|.+. .
T Consensus 88 -----~d~~ei~~~~~~~vd~i-r~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 88 -----VDLIEVDAASNTQVDAM-RELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred -----CceeEeeccccCCHHHH-HHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 00000000000001111 1111111 2456699999998764 3555555544334566676666543 2
Q ss_pred hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 331 LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
+... ......+++++++.++..+.+.+.+-...... ..+....|++.++|.+- |+..+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~--~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPF--DATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3211 11235789999999999988877653322111 12456778889999875 34333
No 129
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.70 E-value=0.00086 Score=80.03 Aligned_cols=159 Identities=18% Similarity=0.272 Sum_probs=89.6
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccc-----cccEEeeechhh
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-----DGSSFLADVREK 248 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~ 248 (1278)
..+.|.+..++++.+.+.. +-...+-+.++|++|.|||++|+++++.+...+ ....|+. +...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~ 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGP 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccch
Confidence 4578899999988876531 112345688999999999999999999875542 2233332 2210
Q ss_pred cccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh---------h-----hhHhhcCC
Q 000802 249 CDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD---------H-----LRSLVGEP 313 (1278)
Q Consensus 249 ~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~---------~-----~~~l~~~~ 313 (1278)
.+ +....+. ............++. -.+++++|++|+++..- + +..++..+
T Consensus 261 --------eL----l~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~L 325 (512)
T TIGR03689 261 --------EL----LNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSEL 325 (512)
T ss_pred --------hh----cccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHh
Confidence 00 0000000 000011111222222 13578999999997431 1 22333333
Q ss_pred CCCC--CCcEEEEEeCChhhhh-----hcCccceEecCCCCHHHHHHHHHHhh
Q 000802 314 DWFG--PGSQIIITTRNEHLLK-----LHRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 314 ~~~~--~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
+... .+..||.||....... ....+..++++..+.++..++|..+.
T Consensus 326 Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 326 DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 2111 3445555665443221 12345678999999999999998886
No 130
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.69 E-value=6.6e-05 Score=84.80 Aligned_cols=94 Identities=14% Similarity=0.100 Sum_probs=60.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhc-cccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccc-----hhhhH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRN-----VYDGI 281 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~-----~~~~~ 281 (1278)
-+..+|+|++|+||||||+++|+.+.. +|+..+|+..+.+..+ .+.++++++...+.......... .....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~---EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPE---EVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchh---HHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 356789999999999999999987754 6999999887766321 27777777764333222111111 11112
Q ss_pred HHHHHH-HcCCCceEEEeCCCChh
Q 000802 282 NMLRIR-LRRKKVLVVIDDVAHPD 304 (1278)
Q Consensus 282 ~~l~~~-L~~kr~LlVLDdv~~~~ 304 (1278)
+..+.. -.+++++|++|++....
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHHHH
Confidence 222222 25799999999986543
No 131
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.68 E-value=0.00044 Score=72.86 Aligned_cols=89 Identities=21% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+.+-++|+|+++... ..+.++..+....+.+.+|++|++. .+... ......+++.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 456689999997653 3555655555445667777777654 22222 122358999999999999999876 1 1
Q ss_pred ChhHHHHHHHHHHHcCCCchH
Q 000802 366 FEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLa 386 (1278)
. .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 25688999999998853
No 132
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.68 E-value=0.00036 Score=89.64 Aligned_cols=178 Identities=15% Similarity=0.035 Sum_probs=96.4
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc------ccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD------GSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~~~~~~ 256 (1278)
.-+++|||+.++.++...|.... ..-+.++|.+|+||||+|+.+++++....- ..+|..++........
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~--- 259 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGAS--- 259 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccc---
Confidence 44689999999999999886543 234569999999999999999988754311 2233222221110000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHH--cCCCceEEEeCCCChh-------hhh---HhhcCCCCCCCCcEEEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRL--RRKKVLVVIDDVAHPD-------HLR---SLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~-------~~~---~l~~~~~~~~~gs~IIi 324 (1278)
...........+.+.+ .+++++|++|+++... +.+ .|.+.+. ...-++|-
T Consensus 260 ----------------~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Ig 321 (852)
T TIGR03345 260 ----------------VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIA 321 (852)
T ss_pred ----------------cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEE
Confidence 0001111111111212 2468999999986542 111 2334332 23356666
Q ss_pred EeCChhhhhh-------cCccceEecCCCCHHHHHHHHHHhhcC--CCCCChhHHHHHHHHHHHcCCC
Q 000802 325 TTRNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCLKAFD--THKPFEEYVELAESVVKYASGL 383 (1278)
Q Consensus 325 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~af~--~~~~~~~~~~~~~~i~~~~~Gl 383 (1278)
||........ ...-.++.+++++.+++.+++....-. ..+...-..+....+++.+.+.
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 6665322111 112247899999999999997543311 1111111124455566666543
No 133
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.67 E-value=0.00087 Score=78.40 Aligned_cols=173 Identities=15% Similarity=0.179 Sum_probs=97.0
Q ss_pred CCcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccC
Q 000802 184 PKELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKE 252 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1278)
-..+.|.+..+++|.+.+.. +-...+-+.++|++|.|||++|+++++.....|- .+. ..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~-~s------ 213 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV-GS------ 213 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH------
Confidence 34688999999888876631 1134567889999999999999999987654331 111 00
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF 316 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 316 (1278)
.+.. ...+. ......+.+.......+.+|++|+++..- .+..++.....+
T Consensus 214 ----~l~~----k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 ----EFVQ----KYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred ----HHHH----Hhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 1111 10110 00011122222334678999999986431 122232222211
Q ss_pred --CCCcEEEEEeCChhhhh-----hcCccceEecCCCCHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHcCCCc
Q 000802 317 --GPGSQIIITTRNEHLLK-----LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKP-FEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 317 --~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 384 (1278)
..+..||.||....... ....+..++++..+.++..++|..+.-+.... .-+ ..++++.+.|.-
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence 23567788887543322 12346678999999999999998765332211 112 334556666654
No 134
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.66 E-value=0.0011 Score=81.28 Aligned_cols=196 Identities=17% Similarity=0.167 Sum_probs=109.1
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc---cEEeeechhhcccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG---SSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~---~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
....++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-..... ..-+.-+. ...--
T Consensus 22 ~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg--------~c~~C 92 (598)
T PRK09111 22 TFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG--------VGEHC 92 (598)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc--------ccHHH
Confidence 4567999999999999988653 234568899999999999999999866432210 00000000 00000
Q ss_pred HHHHHH----HhC---CCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CC
Q 000802 260 KQLLSD----LLK---LADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RN 328 (1278)
Q Consensus 260 ~~ll~~----l~~---~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~ 328 (1278)
+.+... +.. .......++.+.++.++.. ..+++-++|+|+++... ..+.|+..+..-.+.+.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 111100 000 0001111111111111111 12345579999997654 3555555444334566766555 43
Q ss_pred hhhhhhc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 329 EHLLKLH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 329 ~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
..+.... .....+++..++.++..+.+.+.+-......+ .+....|++.++|.+.-+..
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~--~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVE--DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 4433222 23457899999999999999887643322222 25678889999998864433
No 135
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.62 E-value=0.00036 Score=89.13 Aligned_cols=154 Identities=15% Similarity=0.119 Sum_probs=86.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----c-cccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----F-DGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~ 256 (1278)
.-++++||+.+++++...|.... ..-+.++|++|+|||++|+.+++++... + ...+|..++......
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~----- 252 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG----- 252 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh-----
Confidence 34579999999999998886542 2345699999999999999999877432 1 223333222211100
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHH-cCCCceEEEeCCCChh-----------hhhHhhcCCCCCCCCcEEEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRL-RRKKVLVVIDDVAHPD-----------HLRSLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~IIi 324 (1278)
. ....+.++....+.+.+ ..++.+|++|+++..- .-+.+.+.+. ...-++|-
T Consensus 253 -------------~-~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~Ig 316 (731)
T TIGR02639 253 -------------T-KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIG 316 (731)
T ss_pred -------------c-cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEE
Confidence 0 00011222222222222 2467899999986431 1223333332 12234555
Q ss_pred EeCChhhhhh-------cCccceEecCCCCHHHHHHHHHHhh
Q 000802 325 TTRNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 325 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
+|..+..... ...-..++++.++.++..+++....
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 5543221111 1112478999999999999998644
No 136
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.61 E-value=0.00056 Score=84.92 Aligned_cols=202 Identities=19% Similarity=0.155 Sum_probs=103.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc--cc---cccEEee-echhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH--EF---DGSSFLA-DVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~--~f---~~~~~~~-~~~~~~~~~~~~~ 256 (1278)
..+.++|++..+..+...+.. .....+.|+|++|+||||+|+.+++..+. .+ ...-|+. +.... . .. ..
T Consensus 152 ~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l-~-~d-~~ 226 (615)
T TIGR02903 152 AFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL-R-WD-PR 226 (615)
T ss_pred cHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc-c-CC-HH
Confidence 445789999999988777643 33457999999999999999999875421 11 1122221 11110 0 00 11
Q ss_pred HHHHHH---------------HHHHhCCCCC----------------Cccc-hhhhHHHHHHHHcCCCceEEEeCCCChh
Q 000802 257 SLQKQL---------------LSDLLKLADN----------------SIRN-VYDGINMLRIRLRRKKVLVVIDDVAHPD 304 (1278)
Q Consensus 257 ~l~~~l---------------l~~l~~~~~~----------------~~~~-~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1278)
.+...+ +.. .+.... +... .......+.+.++.+++.++-|+.|..+
T Consensus 227 ~i~~~llg~~~~~~~~~a~~~l~~-~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~ 305 (615)
T TIGR02903 227 EVTNPLLGSVHDPIYQGARRDLAE-TGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDD 305 (615)
T ss_pred HHhHHhcCCccHHHHHHHHHHHHH-cCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCC
Confidence 111111 110 000000 0000 1123456666777777777766655432
Q ss_pred --hhhHhhcCCCCCCCCcEEEE--EeCChhhhh-hc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHH
Q 000802 305 --HLRSLVGEPDWFGPGSQIII--TTRNEHLLK-LH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVK 378 (1278)
Q Consensus 305 --~~~~l~~~~~~~~~gs~IIi--TTR~~~v~~-~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~ 378 (1278)
.|+.+...+....+...++| ||++..... .. .....+.+.+++.+|.++++.+.+-......+ .++...|.+
T Consensus 306 ~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls--~eal~~L~~ 383 (615)
T TIGR02903 306 PNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLA--AGVEELIAR 383 (615)
T ss_pred cccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHH
Confidence 35555544443344444555 566543211 11 12236688999999999999887643211111 234444555
Q ss_pred HcCCCchHHHHHHh
Q 000802 379 YASGLPLALKVLGS 392 (1278)
Q Consensus 379 ~~~GlPLal~~lg~ 392 (1278)
++..-+-|+..++.
T Consensus 384 ys~~gRraln~L~~ 397 (615)
T TIGR02903 384 YTIEGRKAVNILAD 397 (615)
T ss_pred CCCcHHHHHHHHHH
Confidence 54433455554443
No 137
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.59 E-value=0.0016 Score=70.56 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEe
Q 000802 193 RLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 242 (1278)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1278)
.+..+.+....-......+.++|.+|+|||+||.++++.+..+-..++++
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 34444444432222345788999999999999999998776554444444
No 138
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.59 E-value=6.8e-05 Score=81.56 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=58.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhc-cccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCcc-----chhhhH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISH-EFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIR-----NVYDGI 281 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~-----~~~~~~ 281 (1278)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+.. ..+.++++.+...+......... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~---~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP---EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC---ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 457899999999999999999987754 688888887555421 12777777773332221111111 111222
Q ss_pred HHHHHH-HcCCCceEEEeCCCCh
Q 000802 282 NMLRIR-LRRKKVLVVIDDVAHP 303 (1278)
Q Consensus 282 ~~l~~~-L~~kr~LlVLDdv~~~ 303 (1278)
+..... -.++++++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 222222 2479999999998654
No 139
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.59 E-value=0.0011 Score=81.76 Aligned_cols=196 Identities=16% Similarity=0.180 Sum_probs=105.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhh---cccCCCHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREK---CDKEGSVISLQ 259 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~l~ 259 (1278)
....+||.+..++.|...+..+ .-.+.+.++|+.|+||||+|+.++..+-..-....+- .+... ...+.++.
T Consensus 16 ~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~-pC~~C~~~~~~~~Dvi--- 90 (725)
T PRK07133 16 TFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE-PCQECIENVNNSLDII--- 90 (725)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC-chhHHHHhhcCCCcEE---
Confidence 3456899999999999988653 2345678999999999999999997653210000000 00000 00000000
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEE-EeCChhhhhh-
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIII-TTRNEHLLKL- 334 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIi-TTR~~~v~~~- 334 (1278)
.+-+.......++.+..+.+... ..+++-++|+|+++.. ..+..|+..+....+...+|+ ||+...+...
T Consensus 91 -----eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI 165 (725)
T PRK07133 91 -----EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTI 165 (725)
T ss_pred -----EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHH
Confidence 00000000011111111111111 1256668999999765 346666655443344555554 4444444432
Q ss_pred cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 335 HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 335 ~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
......+++.+++.++..+.+...+-......+ .+.+..+++.++|.+- |+..+
T Consensus 166 ~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id--~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 166 LSRVQRFNFRRISEDEIVSRLEFILEKENISYE--KNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HhhceeEEccCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 223458899999999999888776533221111 2457788899988764 44433
No 140
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.58 E-value=0.0014 Score=81.47 Aligned_cols=195 Identities=16% Similarity=0.152 Sum_probs=107.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
..+.+||.+.-++.|..++..+. -...+.++|+.|+||||+|+.+++.+.......-+ ...+ .....+.+
T Consensus 14 ~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~--------~~c~-~c~~c~~i 83 (585)
T PRK14950 14 TFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG--------RPCG-TCEMCRAI 83 (585)
T ss_pred CHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--------CCCc-cCHHHHHH
Confidence 34579999999999988886432 23566899999999999999999866321100000 0000 00111111
Q ss_pred HHHH----hCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCC-hh
Q 000802 263 LSDL----LKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRN-EH 330 (1278)
Q Consensus 263 l~~l----~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~-~~ 330 (1278)
.... ...........++. ..+.+.+ .+++-++|+|+++.. +..+.|+..+....+.+.+|++|.+ ..
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 1100 00000000111111 1122222 245668999999755 3466665544433456666666643 33
Q ss_pred hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 331 LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 331 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
+... ......+++..++.++....+.+.+.......+ .+.+..+++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~--~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLE--PGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 3322 122357789999999999888877644322222 256778999999988654433
No 141
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.58 E-value=0.0044 Score=66.82 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=114.2
Q ss_pred CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhh--ccccccEEeeechhhcccCCCHHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLIS--HEFDGSSFLADVREKCDKEGSVISLQ 259 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~--~~f~~~~~~~~~~~~~~~~~~~~~l~ 259 (1278)
...+.++|.+..+..|...+.. ........+|++|.|||+-|++++..+- +-|++++.-.+.+..-... +...-
T Consensus 33 kt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--vvr~K 108 (346)
T KOG0989|consen 33 KTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--VVREK 108 (346)
T ss_pred CcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--chhhh
Confidence 3456799999999999888865 5677888999999999999999987652 3455544322222111000 00000
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHH--cCCC-ceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCChhhh-h
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRL--RRKK-VLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNEHLL-K 333 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~kr-~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~ 333 (1278)
.+-.+.+.. ...... ...+ -.||||+++.. +.|..+......+...+|.|..+..-... .
T Consensus 109 ik~fakl~~--------------~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 109 IKNFAKLTV--------------LLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hcCHHHHhh--------------ccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 000011000 000000 0123 37889999876 45888887776666777776655543221 1
Q ss_pred h-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc-hHHHHH
Q 000802 334 L-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP-LALKVL 390 (1278)
Q Consensus 334 ~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 390 (1278)
- ......+..++|.+++..+-+...|-+.....+ .+..+.|++.++|-- -|+.++
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d--~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID--DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 1 112246789999999999988888855544433 367888999999854 344444
No 142
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.55 E-value=0.0015 Score=73.21 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=69.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccc--cccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
-+.++|++|.||||+|+.++..+...- ....|+. +. ... +...+.+.. .......+.+
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~-v~--------~~~----l~~~~~g~~------~~~~~~~~~~- 119 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS-VT--------RDD----LVGQYIGHT------APKTKEILKR- 119 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE-ec--------HHH----HhHhhcccc------hHHHHHHHHH-
Confidence 578999999999999999887654321 1112332 11 111 111211111 0111111221
Q ss_pred HcCCCceEEEeCCCCh-----------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhc--------CccceEecCCCCH
Q 000802 288 LRRKKVLVVIDDVAHP-----------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLH--------RVRKVYKLEALTY 348 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--------~~~~~~~l~~L~~ 348 (1278)
-..-+|+||+++.. +.++.+.........+.+||.+|......... .....+++++++.
T Consensus 120 --a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ 197 (284)
T TIGR02880 120 --AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSE 197 (284)
T ss_pred --ccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCH
Confidence 13468899999733 12344444443334556777776543222111 1235789999999
Q ss_pred HHHHHHHHHhh
Q 000802 349 DEAFRLLCLKA 359 (1278)
Q Consensus 349 ~ea~~Lf~~~a 359 (1278)
+|..+++...+
T Consensus 198 edl~~I~~~~l 208 (284)
T TIGR02880 198 AELLVIAGLML 208 (284)
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 143
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0031 Score=80.24 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=104.8
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--c---cccEEeeechhhccc-CCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--F---DGSSFLADVREKCDK-EGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f---~~~~~~~~~~~~~~~-~~~~~ 256 (1278)
....+||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+--. . .|...- .++..... .+..
T Consensus 13 ~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~-sC~~~~~g~~~~~- 89 (824)
T PRK07764 13 TFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECD-SCVALAPGGPGSL- 89 (824)
T ss_pred CHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccH-HHHHHHcCCCCCC-
Confidence 34578999999999999886532 23567899999999999999999866311 0 111000 00000000 0000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHH-HHHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeC-Chhhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLR-IRLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTR-NEHLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~-~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR-~~~v~ 332 (1278)
.+ ..+-........++.+..+.+. .-..+++-++|||+++... ..+.|+..+..-...+.+|++|. ...+.
T Consensus 90 dv-----~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl 164 (824)
T PRK07764 90 DV-----TEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVI 164 (824)
T ss_pred cE-----EEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhh
Confidence 00 0000000000111111111111 0123455588999998763 35555555544445666665554 33444
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
.. ......|++..++.++..+++.+.+-......+ .+....|++.++|.+..
T Consensus 165 ~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id--~eal~lLa~~sgGdlR~ 217 (824)
T PRK07764 165 GTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVE--PGVLPLVIRAGGGSVRD 217 (824)
T ss_pred HHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 32 233468899999999999888776532222111 24567788999998743
No 144
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=2.6e-05 Score=93.17 Aligned_cols=192 Identities=26% Similarity=0.287 Sum_probs=83.5
Q ss_pred ccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccC
Q 000802 601 DKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKG 680 (1278)
Q Consensus 601 ~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~ 680 (1278)
..+..+++..+.+.+.-..+..+.+|..|++..+........+..+++|++|+|++|.
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~---------------------- 129 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK---------------------- 129 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc----------------------
Confidence 3444444455555443333445555555555554322221114444555555554432
Q ss_pred CCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCccccccccc-ccCCCCccEEEeeCCCCCCCccc
Q 000802 681 CTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPRS-IGHLSGLVQLTLKGCQNLSSLPV 759 (1278)
Q Consensus 681 ~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~~~~l~~lp~ 759 (1278)
+..+.+.-.++.|+.|++++|... .+. .+..+..|+.+++++|.+..+... +..+.+|+.+.+.+|.....-
T Consensus 130 ---I~~i~~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-- 202 (414)
T KOG0531|consen 130 ---ITKLEGLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-- 202 (414)
T ss_pred ---cccccchhhccchhhheeccCcch-hcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc--
Confidence 333333223444555555543321 111 112245555555555555544432 344555555555554322111
Q ss_pred ccccCcccccccccCccCCccccccccCCC--CCCEEEccCCCCcccCccccCCCCCCEEeecCCC
Q 000802 760 TISSLKRLRNLELSGCSKLKNFPQIVTSME--DLSELYLDGTSITEVPSSIELLTGLELLTLKGCK 823 (1278)
Q Consensus 760 ~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~--~L~~L~L~~~~l~~lp~~l~~l~~L~~L~L~~~~ 823 (1278)
.+..+..+..+++..+.....-+ +..+. .|+.+++.++.+...+..+..+..+..|++.++.
T Consensus 203 ~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 203 GLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred chHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 11122222222333322211110 01111 3566677777776665556666666666666554
No 145
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.54 E-value=0.0021 Score=74.01 Aligned_cols=148 Identities=18% Similarity=0.193 Sum_probs=84.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
..+.++|.+...+.+..++..+ .-..++.++|++|+||||+|+++++.....+ ..+ +... +....+. ..
T Consensus 19 ~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i-~~~~-----~~~~~i~-~~ 87 (316)
T PHA02544 19 TIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFV-NGSD-----CRIDFVR-NR 87 (316)
T ss_pred cHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEe-ccCc-----ccHHHHH-HH
Confidence 3467899999999999988643 3346777899999999999999998763321 122 1111 1111111 11
Q ss_pred HHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCCh---hhhhHhhcCCCCCCCCcEEEEEeCChhhh-hh-cCc
Q 000802 263 LSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHP---DHLRSLVGEPDWFGPGSQIIITTRNEHLL-KL-HRV 337 (1278)
Q Consensus 263 l~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~---~~~~~l~~~~~~~~~gs~IIiTTR~~~v~-~~-~~~ 337 (1278)
+...... ..+.+.+-+||+||++.. +..+.+.........+.++|+||...... .. ...
T Consensus 88 l~~~~~~----------------~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 88 LTRFAST----------------VSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHh----------------hcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1111000 001234568999999865 22223332233334677899888754311 11 112
Q ss_pred cceEecCCCCHHHHHHHHHH
Q 000802 338 RKVYKLEALTYDEAFRLLCL 357 (1278)
Q Consensus 338 ~~~~~l~~L~~~ea~~Lf~~ 357 (1278)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 23567777888887776644
No 146
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.54 E-value=8.6e-07 Score=103.50 Aligned_cols=13 Identities=46% Similarity=0.851 Sum_probs=8.3
Q ss_pred CCCccEEEeeCCC
Q 000802 693 MKSLKTLVLSGCL 705 (1278)
Q Consensus 693 l~~L~~L~L~~~~ 705 (1278)
..+|++|.|.+|.
T Consensus 108 F~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 108 FRSLRVLELRGCD 120 (1096)
T ss_pred ccceeeEEecCcc
Confidence 5666666666654
No 147
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.54 E-value=0.0017 Score=77.66 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=105.4
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc------cccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 256 (1278)
..+.++|.+..++.+...+..+. -...+.++|+.|+||||+|+.+++.+-..- .+.... ++++...... ..
T Consensus 15 ~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~-~C~~i~~~~~-~d 91 (451)
T PRK06305 15 TFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCA-SCKEISSGTS-LD 91 (451)
T ss_pred CHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccH-HHHHHhcCCC-Cc
Confidence 44578999999999999886432 235678999999999999999998663210 000000 0000000000 00
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~ 332 (1278)
...+-+.......++.+..+.+.. -..+++-++|+|+++... ..+.|...+....+...+|++|.. ..+.
T Consensus 92 ------~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~ 165 (451)
T PRK06305 92 ------VLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIP 165 (451)
T ss_pred ------eEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcc
Confidence 000000000000111111111110 112566789999987553 344554444433446666666643 3333
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVL 390 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~l 390 (1278)
.. ......+++.+++.++..+.+.+.+-+..... ..+.+..++++++|.+- |+..+
T Consensus 166 ~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i--~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 166 GTILSRCQKMHLKRIPEETIIDKLALIAKQEGIET--SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred hHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 22345789999999999988877653322111 13567889999999764 44443
No 148
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.53 E-value=0.0035 Score=66.54 Aligned_cols=54 Identities=22% Similarity=0.428 Sum_probs=41.0
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+.++|.+.+.+.|.+-... .+....-|.+||..|.|||++++++.+.+..+
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 3456799999999888754431 22344567789999999999999999887654
No 149
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.0021 Score=77.35 Aligned_cols=192 Identities=16% Similarity=0.136 Sum_probs=105.4
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----ccccEEeeechhhccc-CCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVREKCDK-EGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~-~~~~~ 256 (1278)
....++|.+.-++.+...+..+ .-...+.++|+.|+||||+|+.++..+... .++... .++...... ..++.
T Consensus 14 ~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 14 FFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDLI 91 (486)
T ss_pred cHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcEE
Confidence 3456899999999999988653 234566789999999999999999765311 111100 001000000 00000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEe-CC
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITT-RN 328 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~ 328 (1278)
. +-........+ +..+.+.. .+++-++|+|+++.. +..+.++..+....+...+|++| +.
T Consensus 92 e--------idaas~~gvd~----ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~ 159 (486)
T PRK14953 92 E--------IDAASNRGIDD----IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEY 159 (486)
T ss_pred E--------EeCccCCCHHH----HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCH
Confidence 0 00000000011 11222222 245669999999765 33555555444334455666555 43
Q ss_pred hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 329 EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 329 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
..+... ......+.+.+++.++....+...+-...... ..+.+..+++.++|.+..+..+
T Consensus 160 ~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~i--d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 160 DKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEY--EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred HHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 333322 22235789999999999988887664322221 1255677888899977544433
No 150
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=6.5e-05 Score=79.42 Aligned_cols=206 Identities=18% Similarity=0.185 Sum_probs=116.8
Q ss_pred CCCCCCEEEccCCCCcc---cCccccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCCCCc-hhhhhhhcCCCCC
Q 000802 787 SMEDLSELYLDGTSITE---VPSSIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGCSKL-ENVLETLGQVESS 862 (1278)
Q Consensus 787 ~~~~L~~L~L~~~~l~~---lp~~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c~~l-~~~~~~l~~l~~L 862 (1278)
..+.++.|+|.+|.+.. +-..+.++|.|+.|+|+.|+.-..+...-..+.+|+.|-+.|.... ...-..+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666653 3334566777777777666543322221134556666666654332 2223345566667
Q ss_pred ceeecCCCcccCCCcc----ccccCCCceeecCCCCCCCCCCCcccCCCccccCCCCCCcccCCCCCccEEEecCCCCCC
Q 000802 863 EQLDKSGTTIKRPSPN----IFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKISCPAALMLPSLSEKLDLSDCCLGE 938 (1278)
Q Consensus 863 ~~L~L~~n~i~~~~~~----~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~~~~~~~l~~lL~~L~Ls~~~l~~ 938 (1278)
++|+++.|++...... -..-+.+++|++.+|...... .-+ .-...+|++ ..+-+..|.+.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~-------~~~-------~l~r~Fpnv-~sv~v~e~PlK~ 213 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL-------NKN-------KLSRIFPNV-NSVFVCEGPLKT 213 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH-------HHH-------hHHhhcccc-hheeeecCcccc
Confidence 7777766644322110 012234455555555321100 000 112234555 777888887765
Q ss_pred CCcccccCCCCCCcEecCCCCcCcccc--hhhcCCCCCCEeeccCCcCCCcCCCCCCCCcEEEecCCcccccc
Q 000802 939 GAIPTDIGNLCLLKELCLSGNNFVTLP--ASINSLLNLEELKLEDCKRLQSLPQLPPNVEKVRVNGCASLVTL 1009 (1278)
Q Consensus 939 ~~lp~~l~~l~sL~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~c~~L~~lp~lp~sL~~L~i~~C~~L~~l 1009 (1278)
..-......++++..|+|+.|++.+.. +.+..++.|.-|.+++++....+.. .-=+.|-|...++++-+
T Consensus 214 ~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~--~err~llIaRL~~v~vL 284 (418)
T KOG2982|consen 214 ESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG--GERRFLLIARLTKVQVL 284 (418)
T ss_pred hhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC--CcceEEEEeeccceEEe
Confidence 555556677888889999999888653 4678899999999999998877654 11233445555555544
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.51 E-value=6.5e-05 Score=57.35 Aligned_cols=41 Identities=34% Similarity=0.496 Sum_probs=25.8
Q ss_pred CCCcEecCCCCcCcccchhhcCCCCCCEeeccCCcCCCcCCC
Q 000802 949 CLLKELCLSGNNFVTLPASINSLLNLEELKLEDCKRLQSLPQ 990 (1278)
Q Consensus 949 ~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 990 (1278)
++|++|+|++|+|+.+|+.+++|++|+.|++++|+ +.++|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 35677777777777777667777777777777773 444443
No 152
>PRK12377 putative replication protein; Provisional
Probab=97.50 E-value=0.002 Score=70.02 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=28.8
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
...+.++|..|+|||+||.++++.+..+...+.|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998876544455554
No 153
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.48 E-value=0.00088 Score=86.49 Aligned_cols=154 Identities=11% Similarity=0.062 Sum_probs=85.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc------cccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 256 (1278)
.-++++||+.++.++...|.... ..-+.++|.+|+||||+|+.++.++.... ...+|..++.......
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~---- 249 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGA---- 249 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhcc----
Confidence 34579999999999999886543 23456999999999999999998775421 2233332222211000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHH--cCCCceEEEeCCCChh----------hhhHhhcCCCCCCCCcEEEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRL--RRKKVLVVIDDVAHPD----------HLRSLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~gs~IIi 324 (1278)
. .....+.....+.+.+ .+++++|++|+++... .-+-+.+.+. ...-++|-
T Consensus 250 --------------~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Ig 312 (857)
T PRK10865 250 --------------K-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVG 312 (857)
T ss_pred --------------c-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEE
Confidence 0 0001111122222221 2578999999986543 1222333332 22345565
Q ss_pred EeCChhhhhh-------cCccceEecCCCCHHHHHHHHHHhh
Q 000802 325 TTRNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 325 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
||........ ...-..+.+...+.++..+++....
T Consensus 313 aTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5554432111 1112356677779999999886543
No 154
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.48 E-value=3.2e-05 Score=92.48 Aligned_cols=169 Identities=22% Similarity=0.223 Sum_probs=100.2
Q ss_pred cCceEEEecCCCCCCCCc-ccccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcCC
Q 000802 579 SKLRLLDWHGYPLKSLPL-NLQLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGC 657 (1278)
Q Consensus 579 ~~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c 657 (1278)
.+|.+|++.++.+..+.. .-.+.+|++|++++|.|.++. ++..+..|+.|++++|. +.....+..+++|+.+++++|
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSYN 172 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCcc
Confidence 466777777777776666 335777777777777777763 55566667777777765 333445555777777777776
Q ss_pred CCCCccC-cccccCCCceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccc--cchhhcccCccccccc
Q 000802 658 TRLRDIH-PSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSME--CLRELLLDETDIKEIP 734 (1278)
Q Consensus 658 ~~l~~l~-~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~--~L~~L~L~~~~i~~lp 734 (1278)
.....-+ . +..+.+|+.+.+.++. +..+...-.+..+..+++..+.....-+ +..+. +|+.+++.++.+..++
T Consensus 173 ~i~~ie~~~-~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 173 RIVDIENDE-LSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred hhhhhhhhh-hhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc
Confidence 5433222 1 4556666666666642 2222222223333334444433221111 11122 4888889988888887
Q ss_pred ccccCCCCccEEEeeCCCC
Q 000802 735 RSIGHLSGLVQLTLKGCQN 753 (1278)
Q Consensus 735 ~~i~~l~~L~~L~L~~~~~ 753 (1278)
..+..+.++..|++.++..
T Consensus 249 ~~~~~~~~l~~l~~~~n~~ 267 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNRI 267 (414)
T ss_pred ccccccccccccchhhccc
Confidence 7777788888888876653
No 155
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.46 E-value=0.00067 Score=81.43 Aligned_cols=194 Identities=15% Similarity=0.155 Sum_probs=107.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc-cccc--cEEee-echhhcccCCCHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH-EFDG--SSFLA-DVREKCDKEGSVISL 258 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~-~f~~--~~~~~-~~~~~~~~~~~~~~l 258 (1278)
..+.+||-+.-.+.+...+..+ .-..+..++|+.|+||||+|+.+++.+-. .... .|... .++.......
T Consensus 12 ~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h----- 85 (535)
T PRK08451 12 HFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH----- 85 (535)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC-----
Confidence 3457999999889999888644 23456689999999999999999886521 1100 00000 0000000000
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHH---H-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hh
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRI---R-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HL 331 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~---~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v 331 (1278)
..+...........++..+.+.. . ..+++-++|+|+++... ..+.|+..+....+.+++|++|.+. .+
T Consensus 86 -----~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 86 -----IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred -----CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000000000001111111111 0 11455688999997653 3555655544445667777777664 22
Q ss_pred hhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHH
Q 000802 332 LKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
... ......+++.+++.++..+.+.+.+-......+ .+.+..|++.++|.+.-+..
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~--~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYE--PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHH
Confidence 211 122458899999999999988776643322222 35678899999998854433
No 156
>CHL00176 ftsH cell division protein; Validated
Probab=97.46 E-value=0.002 Score=79.69 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=97.7
Q ss_pred CCcccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 184 PKELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
.+.++|.++..+++.+.+.. +....+-|.++|++|.|||++|++++......| +.....+
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~----i~is~s~------ 251 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPF----FSISGSE------ 251 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe----eeccHHH------
Confidence 45688988877777665531 112245688999999999999999987653222 1111111
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC-
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF- 316 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 316 (1278)
+.... .+. ........+.......+.+|++||++... .+..++...+.+
T Consensus 252 ----f~~~~----~g~------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 252 ----FVEMF----VGV------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred ----HHHHh----hhh------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 00000 000 00111223344445678999999996441 133344333211
Q ss_pred -CCCcEEEEEeCChhhhh-----hcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCC
Q 000802 317 -GPGSQIIITTRNEHLLK-----LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGL 383 (1278)
Q Consensus 317 -~~gs~IIiTTR~~~v~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1278)
..+-.||.||....... ....+..+.++..+.++..+++..++-.... .+ ......+++.+.|.
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~--d~~l~~lA~~t~G~ 387 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SP--DVSLELIARRTPGF 387 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-ch--hHHHHHHHhcCCCC
Confidence 24556677776643322 1234567899999999999999888744211 11 12345566666663
No 157
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.46 E-value=0.0044 Score=68.69 Aligned_cols=168 Identities=19% Similarity=0.222 Sum_probs=99.9
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCC-eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSND-VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~-~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
..+.+.+|+.++..+..++...+.. +..|.|+|-+|.|||.+.+++.+...- ..+|+. +.+.+. ...+..+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n-~~ecft----~~~lle~ 75 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN-CVECFT----YAILLEK 75 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee-hHHhcc----HHHHHHH
Confidence 3567889999999999999865553 345689999999999999999986622 245654 544443 6666777
Q ss_pred HHHHHh-CCCCCCc-----cchhhhHHHHHH--HHc--CCCceEEEeCCCChhhhhH-----hhcCCCCCCCCcEEEEEe
Q 000802 262 LLSDLL-KLADNSI-----RNVYDGINMLRI--RLR--RKKVLVVIDDVAHPDHLRS-----LVGEPDWFGPGSQIIITT 326 (1278)
Q Consensus 262 ll~~l~-~~~~~~~-----~~~~~~~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~-----l~~~~~~~~~gs~IIiTT 326 (1278)
++.+.. ...+... .+..+.+..+.+ ... ++.++||||+++...+.++ +...........-.|+++
T Consensus 76 IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 76 ILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 777763 2111111 111222223333 122 4689999999987765332 111111111223344444
Q ss_pred CChhh---hhhcCcc--ceEecCCCCHHHHHHHHHHh
Q 000802 327 RNEHL---LKLHRVR--KVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 327 R~~~v---~~~~~~~--~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
-.... ...+++. .+...+.-+.+|..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 43222 2223433 35677889999999998553
No 158
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.46 E-value=0.00094 Score=86.67 Aligned_cols=153 Identities=12% Similarity=0.075 Sum_probs=86.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc------cccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~~~~~~~~~~~~~~ 256 (1278)
.-+++|||+.+++++...|.... ..-+.++|++|+|||++|+.++.++...+ ...+|..++.....
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a------ 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIA------ 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhh------
Confidence 34579999999999999886543 23455899999999999999998775432 12233322221100
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc--CCCceEEEeCCCChh----------hhhHhhcCCCCCCCCcEEEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR--RKKVLVVIDDVAHPD----------HLRSLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----------~~~~l~~~~~~~~~gs~IIi 324 (1278)
... .....+.....+.+.+. +++.+|++|+++... ..+.+.+.+. ...-++|-
T Consensus 243 ------------~~~-~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~--~g~i~~Ig 307 (852)
T TIGR03346 243 ------------GAK-YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA--RGELHCIG 307 (852)
T ss_pred ------------cch-hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh--cCceEEEE
Confidence 000 00111112222222222 468999999987542 1222333321 22345555
Q ss_pred EeCChhhhhh-------cCccceEecCCCCHHHHHHHHHHh
Q 000802 325 TTRNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 325 TTR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
+|........ ...-..+.++..+.++..+++...
T Consensus 308 aTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred eCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 5554433111 112246789999999999988755
No 159
>CHL00181 cbbX CbbX; Provisional
Probab=97.45 E-value=0.0033 Score=70.48 Aligned_cols=131 Identities=15% Similarity=0.170 Sum_probs=71.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcc-c-cccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHE-F-DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
..+.++|++|+||||+|+.+++..... + ...-|+. +. ... +.....+.. .......+.+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~-v~--------~~~----l~~~~~g~~------~~~~~~~l~~ 120 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT-VT--------RDD----LVGQYIGHT------APKTKEVLKK 120 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE-ec--------HHH----HHHHHhccc------hHHHHHHHHH
Confidence 347899999999999999998754321 1 1111221 11 111 112211111 0011111221
Q ss_pred HHcCCCceEEEeCCCCh-----------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhc--------CccceEecCCCC
Q 000802 287 RLRRKKVLVVIDDVAHP-----------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLH--------RVRKVYKLEALT 347 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~--------~~~~~~~l~~L~ 347 (1278)
...-+|++|+++.. +..+.|.........+.+||+++......... .....+++++++
T Consensus 121 ---a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t 197 (287)
T CHL00181 121 ---AMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYT 197 (287)
T ss_pred ---ccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcC
Confidence 13358999999653 23344444333334556777777644332111 234578999999
Q ss_pred HHHHHHHHHHhhcC
Q 000802 348 YDEAFRLLCLKAFD 361 (1278)
Q Consensus 348 ~~ea~~Lf~~~af~ 361 (1278)
.+|..+++...+-.
T Consensus 198 ~~el~~I~~~~l~~ 211 (287)
T CHL00181 198 PEELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998877643
No 160
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0011 Score=72.85 Aligned_cols=169 Identities=17% Similarity=0.323 Sum_probs=103.0
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
..+=|.++++++|.+.... +-..++=|.++|++|.|||-||++|+++.... |+..++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvgS------ 219 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVGS------ 219 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-----EEEeccH------
Confidence 3466899999998887642 22345668899999999999999999977654 3332211
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH----cCCCceEEEeCCCChh----------------hhhHhhcCC
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL----RRKKVLVVIDDVAHPD----------------HLRSLVGEP 313 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~----------------~~~~l~~~~ 313 (1278)
.+.+.. ++ ++..++++.+ ...+..|.+|.++... .+-.|+..+
T Consensus 220 ---ElVqKY----iG----------EGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql 282 (406)
T COG1222 220 ---ELVQKY----IG----------EGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL 282 (406)
T ss_pred ---HHHHHH----hc----------cchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc
Confidence 111111 11 1223333332 2568899999886532 133455555
Q ss_pred CCCCC--CcEEEEEeCChh-----hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHcCCCch
Q 000802 314 DWFGP--GSQIIITTRNEH-----LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKP-FEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 314 ~~~~~--gs~IIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlPL 385 (1278)
+.|.+ .-+||..|.... +++--..++.++++.-+.+.-.++|.-|+.+-.-. .-++ +.+++.+.|.--
T Consensus 283 DGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sG 358 (406)
T COG1222 283 DGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSG 358 (406)
T ss_pred cCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCch
Confidence 54443 457887776443 33334567889999778888888998887543322 1233 345556666553
No 161
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.44 E-value=0.0078 Score=74.60 Aligned_cols=188 Identities=18% Similarity=0.129 Sum_probs=103.8
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc------ccEEeeechhhccc-CCCH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD------GSSFLADVREKCDK-EGSV 255 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~------~~~~~~~~~~~~~~-~~~~ 255 (1278)
..+.++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+--... +..-- .++..... +.++
T Consensus 15 ~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~-sC~~~~~~~~~n~ 92 (614)
T PRK14971 15 TFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECE-SCVAFNEQRSYNI 92 (614)
T ss_pred CHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcch-HHHHHhcCCCCce
Confidence 3457899999999999988643 23456789999999999999999876531100 00000 00000000 0000
Q ss_pred HHHHHHHHHHHhCCCCCCccchhhhHHHHHHH----HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CC
Q 000802 256 ISLQKQLLSDLLKLADNSIRNVYDGINMLRIR----LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RN 328 (1278)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~ 328 (1278)
. . +... .....++..+.+.+. ..+++=++|+|+++... ..+.|+..+..-...+.+|++| +.
T Consensus 93 ~--------~-ld~~--~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 93 H--------E-LDAA--SNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred E--------E-eccc--ccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 0 0 0000 000011111111110 12345588999987754 3555555444334566666544 44
Q ss_pred hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 329 EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 329 ~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
..+... .....++++.+++.++....+.+.+-......+ .+.+..|++.++|..-
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~--~~al~~La~~s~gdlr 217 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAE--PEALNVIAQKADGGMR 217 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHH
Confidence 444433 233468999999999999988876643322211 2467888899998764
No 162
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.44 E-value=0.00081 Score=86.99 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=85.1
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----c-cccEEeeechhhcccCCCHHH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----F-DGSSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~ 257 (1278)
-++++||+++++++...|.... ..-+.++|++|+|||++|+.++.++... . ...+|..+.....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~-------- 247 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL-------- 247 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh--------
Confidence 4579999999999999997543 2245699999999999999999876431 1 1233333222111
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHHH-cCCCceEEEeCCCChh---------hhh-HhhcCCCCCCCCcEEEEEe
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIRL-RRKKVLVVIDDVAHPD---------HLR-SLVGEPDWFGPGSQIIITT 326 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~~---------~~~-~l~~~~~~~~~gs~IIiTT 326 (1278)
..... ....++.+..+.+.+ ..++.+|++|+++..- +.. -|.+.+. ...-++|.+|
T Consensus 248 ----------ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaT 314 (821)
T CHL00095 248 ----------AGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGAT 314 (821)
T ss_pred ----------ccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeC
Confidence 00000 011222222222222 3568899999985321 112 2222221 1234566666
Q ss_pred CChhhhhh-------cCccceEecCCCCHHHHHHHHHH
Q 000802 327 RNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCL 357 (1278)
Q Consensus 327 R~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 357 (1278)
........ .....++.++..+.++...++..
T Consensus 315 t~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 315 TLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred CHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 65443221 11224678888999998888764
No 163
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.41 E-value=0.00011 Score=61.18 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=29.4
Q ss_pred CCCEEEccCCCCcccCc-cccCCCCCCEEeecCCCCCCcccccccCCCCCCEEEecCC
Q 000802 790 DLSELYLDGTSITEVPS-SIELLTGLELLTLKGCKNLTRLSSSINGLKSLKTLNLSGC 846 (1278)
Q Consensus 790 ~L~~L~L~~~~l~~lp~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~l~sL~~L~l~~c 846 (1278)
+|+.|++++|.+..+|. .+..+++|+.|++++|.....-+..+.++++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 45666666666666653 3455555555555544432222234445555555555444
No 164
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.41 E-value=0.003 Score=77.23 Aligned_cols=174 Identities=19% Similarity=0.237 Sum_probs=94.5
Q ss_pred CCcccchHHHHHHHHHhhh---c-------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 184 PKELVGIESRLEKLKVHMD---T-------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
.+.++|.+...+++.+++. . +....+-+.++|++|.|||++|++++......| +..+..
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~----~~i~~~------- 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF----FSISGS------- 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe----eeccHH-------
Confidence 3468898887776665443 1 122334588999999999999999997653322 111111
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC-
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF- 316 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~- 316 (1278)
.+.. ...+. ........+.......+.+|++||++... .+..++...+..
T Consensus 123 ---~~~~----~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 123 ---DFVE----MFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred ---HHHH----HHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 1111 00000 01111222333334567899999996531 122233222211
Q ss_pred -CCCcEEEEEeCChh-----hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc
Q 000802 317 -GPGSQIIITTRNEH-----LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 317 -~~gs~IIiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1278)
..+-.||.||.... +.+....+..++++..+.++..++|..+.-+.... .+ .....+++.+.|.-
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PD--VDLKAVARRTPGFS 260 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cc--hhHHHHHHhCCCCC
Confidence 23445666665543 22222456788999999999999998876433221 11 12346777777744
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0017 Score=80.29 Aligned_cols=193 Identities=17% Similarity=0.154 Sum_probs=105.6
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL 262 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l 262 (1278)
....++|.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-.......-...+ + .....+.+
T Consensus 14 ~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C-------g-~C~~C~~i 84 (620)
T PRK14948 14 RFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC-------G-KCELCRAI 84 (620)
T ss_pred cHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC-------c-ccHHHHHH
Confidence 34578999999999999887542 235678999999999999999998663321000000000 0 00001111
Q ss_pred HHH----HhCCCCCCccchhhhHHHHHHH---H-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC
Q 000802 263 LSD----LLKLADNSIRNVYDGINMLRIR---L-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN 328 (1278)
Q Consensus 263 l~~----l~~~~~~~~~~~~~~~~~l~~~---L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~ 328 (1278)
... +...... ....++.+++. + .+++-++|+|+++... ..+.|+..+..-.....+|++|.+
T Consensus 85 ~~g~h~D~~ei~~~----~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~ 160 (620)
T PRK14948 85 AAGNALDVIEIDAA----SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTD 160 (620)
T ss_pred hcCCCccEEEEecc----ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCC
Confidence 000 0000000 00111122221 1 2455688999998653 456665554433345555555544
Q ss_pred -hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 329 -EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 329 -~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
..+... ......+++..++.++....+.+.+-......+ .+.+..+++.++|.+..+..+
T Consensus 161 ~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is--~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 161 PQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIE--PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHH
Confidence 333322 223457788899999988888776643222111 245778899999987544433
No 166
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.40 E-value=0.0071 Score=74.05 Aligned_cols=194 Identities=15% Similarity=0.151 Sum_probs=108.3
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----ccccEEeeechhhcccC-CCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----FDGSSFLADVREKCDKE-GSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f~~~~~~~~~~~~~~~~-~~~~ 256 (1278)
....++|-+..++.|...+..+ .-.+.+.++|+.|+||||+|+.+++.+-.. +++... ..++...... .++.
T Consensus 14 ~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C-~~C~~i~~~~~~dv~ 91 (563)
T PRK06647 14 DFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGEC-SSCKSIDNDNSLDVI 91 (563)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccc-hHHHHHHcCCCCCeE
Confidence 3457899999999999988653 234568899999999999999999866321 111100 0011100000 0000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~ 332 (1278)
. +-+.......++.+..+.+.. -..+++-++|+|+++... .++.|+..+..-.+...+|.+|.. ..+.
T Consensus 92 ~--------idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 92 E--------IDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred E--------ecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 0 000000001111111111111 123566689999997654 466666665544456666666543 3333
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALK 388 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~ 388 (1278)
.. ......+++.+++.++..+.+.+.+.......+ .+.+..|++.++|.+-.+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id--~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYE--DEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHH
Confidence 22 222346899999999999888877644332222 3567778889999875433
No 167
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.39 E-value=3e-05 Score=81.91 Aligned_cols=43 Identities=23% Similarity=0.220 Sum_probs=29.3
Q ss_pred ccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCc
Q 000802 919 ALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFV 962 (1278)
Q Consensus 919 ~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~ 962 (1278)
+..+|.+ -.|+|+.+++.+-.--+.+..+++|..|.+++|.+.
T Consensus 220 se~~p~~-~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 220 SEPFPSL-SCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred CCCCCcc-hhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 3344555 567888888754333456788888888888888654
No 168
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00092 Score=74.16 Aligned_cols=102 Identities=21% Similarity=0.236 Sum_probs=56.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL 288 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1278)
..+.++|..|+|||.||.++++.+..+....+|+. ...+...+........ ......+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-------~~~~~~~~~~l 176 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-------KEDENEIIRSL 176 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-------cccHHHHHHHh
Confidence 45789999999999999999998866533344443 3333333332211100 01122333444
Q ss_pred cCCCceEEEeCCCC--hhhh--hHhhcCCC-CCCCCcEEEEEeCCh
Q 000802 289 RRKKVLVVIDDVAH--PDHL--RSLVGEPD-WFGPGSQIIITTRNE 329 (1278)
Q Consensus 289 ~~kr~LlVLDdv~~--~~~~--~~l~~~~~-~~~~gs~IIiTTR~~ 329 (1278)
.+-. ||||||+.. ..+| +.+...+. ....+..+||||...
T Consensus 177 ~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 177 VNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred cCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 4433 899999942 2222 22222221 113566789998753
No 169
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.35 E-value=0.00026 Score=80.59 Aligned_cols=95 Identities=14% Similarity=0.101 Sum_probs=62.3
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccch-----hhh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNV-----YDG 280 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~-----~~~ 280 (1278)
.-..++|+|++|.|||||++.+++.+... |+..+|+..+.+.. ..+.++++.++..+........... ...
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 34678999999999999999999987665 88888887665531 1277888887655433322221111 111
Q ss_pred HHHHHHH-HcCCCceEEEeCCCChh
Q 000802 281 INMLRIR-LRRKKVLVVIDDVAHPD 304 (1278)
Q Consensus 281 ~~~l~~~-L~~kr~LlVLDdv~~~~ 304 (1278)
.+..+.. -++++++|++|++....
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHHH
Confidence 2222222 35799999999997553
No 170
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.33 E-value=1e-05 Score=94.81 Aligned_cols=177 Identities=28% Similarity=0.282 Sum_probs=115.7
Q ss_pred hhcCCCccceEEEcCccCC--CCcccCccCceEEEecCC----------CCCCCCcccccccchhhcccccccccccccc
Q 000802 553 AFSQMTNLRLLKISNVQLP--EGLGYLSSKLRLLDWHGY----------PLKSLPLNLQLDKAVEFSMCYSCIEELWTGI 620 (1278)
Q Consensus 553 ~f~~~~~Lr~L~l~~~~l~--~~~~~l~~~Lr~L~l~~~----------~l~~lp~~~~~~~L~~L~l~~s~i~~l~~~~ 620 (1278)
.+-.++.||+|.+.++.+. .++..+...|..|-.++. ....+...+.-.+|...++++|.+..+-.++
T Consensus 104 ~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SL 183 (1096)
T KOG1859|consen 104 SIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESL 183 (1096)
T ss_pred eeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHH
Confidence 4556888999999887663 344444444444433221 1112233334567777888888888777778
Q ss_pred ccccccceecccCCcccccCCCCCCCCCccEEEEcCCCCCCccCcccccCCCceEEEccCCCCCCcCCCcccCCCccEEE
Q 000802 621 KPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEGCTRLRDIHPSLLLHNKLILLNLKGCTSLTTLPGEIFMKSLKTLV 700 (1278)
Q Consensus 621 ~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~c~~l~~l~~~l~~l~~L~~L~L~~~~~l~~lp~~~~l~~L~~L~ 700 (1278)
.-++.|+.|+|++|+.. ....+..++.|++|||+.|. +..+|.---.-.+|+.|++++ +.++++-+.-++++|+.||
T Consensus 184 qll~ale~LnLshNk~~-~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn-N~l~tL~gie~LksL~~LD 260 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFT-KVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN-NALTTLRGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHhhhhccchhhhh-hhHHHHhcccccccccccch-hccccccchhhhhheeeeecc-cHHHhhhhHHhhhhhhccc
Confidence 88889999999988733 23367788889999998853 455553222223488888887 4566666655788899999
Q ss_pred eeCCCCCCcC-CcccCccccchhhcccCccccc
Q 000802 701 LSGCLKLRKF-PRVAGSMECLRELLLDETDIKE 732 (1278)
Q Consensus 701 L~~~~~~~~l-p~~~~~l~~L~~L~L~~~~i~~ 732 (1278)
++.|...+.- -..++.+..|+.|.|.+|.+-.
T Consensus 261 lsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 261 LSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred hhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 8886544321 1234667788888888887753
No 171
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=97.26 E-value=0.00031 Score=70.92 Aligned_cols=65 Identities=28% Similarity=0.368 Sum_probs=57.1
Q ss_pred cEEEccccccc-ccchHHHHHHHHHhC-CCceeecCccccC--CCCChHHHHHHHHhhceeeEEecccc
Q 000802 15 DVFLSFRGEDT-RKSFTNHLYAALKNK-GIYVFRDDKELEK--GGSISPGLLKVIEESRISVIVLSKNY 79 (1278)
Q Consensus 15 dvFis~~~~d~-~~~~~~~l~~~L~~~-g~~~~~d~~~~~~--g~~~~~~~~~~i~~s~~~i~v~s~~y 79 (1278)
-|||||+.+.. ...+|..|++.|++. |+.|.+|.++... +..+..++.+.+++++.+|+|+||.|
T Consensus 2 kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~~~g~~~W~~~~~~~ad~Vliv~S~~~ 70 (150)
T PF08357_consen 2 KVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIARQGPPRWMERQIREADKVLIVCSPGY 70 (150)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccccCCHHHHHHHHHhcCCEEEEEeccch
Confidence 39999988553 347799999999999 9999999999854 77899999999999999999999665
No 172
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.26 E-value=0.0014 Score=82.70 Aligned_cols=153 Identities=17% Similarity=0.156 Sum_probs=85.2
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-----c-cccEEeeechhhcccCCCHHH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-----F-DGSSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-----f-~~~~~~~~~~~~~~~~~~~~~ 257 (1278)
-++++||+.+++++...|..... .-+.++|++|+|||++|+.+++++... + ...+|..+ +..
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~--~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~----------~~~ 252 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRK--NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD----------IGS 252 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCC--CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc----------HHH
Confidence 45799999999999998875322 334689999999999999999865332 1 12222111 111
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHHH-cCCCceEEEeCCCCh----------hhhh-HhhcCCCCCCCCcEEEEE
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIRL-RRKKVLVVIDDVAHP----------DHLR-SLVGEPDWFGPGSQIIIT 325 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVLDdv~~~----------~~~~-~l~~~~~~~~~gs~IIiT 325 (1278)
+ +... ....+.+.....+.+.+ +.++.+|++|+++.. .+.. .+.+.+. ...-++|-+
T Consensus 253 ----l----laG~-~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~--~g~i~vIgA 321 (758)
T PRK11034 253 ----L----LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS--SGKIRVIGS 321 (758)
T ss_pred ----H----hccc-chhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh--CCCeEEEec
Confidence 1 1000 00112222222232333 346789999999643 1121 1233221 223455555
Q ss_pred eCChhhhhh-------cCccceEecCCCCHHHHHHHHHHhh
Q 000802 326 TRNEHLLKL-------HRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 326 TR~~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
|........ ...-..++++.++.+++.+++....
T Consensus 322 Tt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 544332111 1122478999999999999987543
No 173
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.21 E-value=0.011 Score=67.23 Aligned_cols=193 Identities=15% Similarity=0.132 Sum_probs=105.6
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc---------------ccccEEeeechhhc
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE---------------FDGSSFLADVREKC 249 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~---------------f~~~~~~~~~~~~~ 249 (1278)
..++|.+..++.+...+..+ .-.....++|+.|+||+++|.+++..+-.. ++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 46899999999999988653 224688899999999999999998765221 2222333211000
Q ss_pred ccCCCHHHHHHHHHHHHhCCCCC-CccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcE
Q 000802 250 DKEGSVISLQKQLLSDLLKLADN-SIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQ 321 (1278)
Q Consensus 250 ~~~~~~~~l~~~ll~~l~~~~~~-~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~ 321 (1278)
.+... -............. ..-.+ +.+..+.+.+ .+++-++|+|+++... ....|+..+..-+ .+.
T Consensus 82 --~g~~~--~~~~~~~~~~~~~~~~~I~i-d~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~ 155 (314)
T PRK07399 82 --QGKLI--TASEAEEAGLKRKAPPQIRL-EQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGT 155 (314)
T ss_pred --ccccc--chhhhhhccccccccccCcH-HHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCe
Confidence 00000 00000000000000 00001 1122333333 2456789999987664 3444444333223 345
Q ss_pred EEEEe-CChhhhhhc-CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 322 IIITT-RNEHLLKLH-RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 322 IIiTT-R~~~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
+|++| +...+.... .....+++.+++.++..+.+.+...... .+ .....++..++|.|..+..+
T Consensus 156 fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~--~~---~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 156 LILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI--LN---INFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc--ch---hHHHHHHHHcCCCHHHHHHH
Confidence 55554 444444332 3346889999999999999987652111 11 11357889999999755443
No 174
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.19 E-value=0.0096 Score=73.26 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc-----cccEEeeechhhccc-CCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF-----DGSSFLADVREKCDK-EGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-----~~~~~~~~~~~~~~~-~~~~~ 256 (1278)
....++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.++..+-..- ++... ..++..... ..++.
T Consensus 14 ~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C-~~C~~i~~g~~~dv~ 91 (559)
T PRK05563 14 TFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNEC-EICKAITNGSLMDVI 91 (559)
T ss_pred cHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcc-HHHHHHhcCCCCCeE
Confidence 45679999999999999987542 346677899999999999999987653110 00000 000000000 00000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEe-CChhhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITT-RNEHLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTT-R~~~v~ 332 (1278)
. +-...+.....+.+..+.+... ..+++-++|+|+++.. ..+..|+..+..-.....+|++| ....+.
T Consensus 92 e--------idaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 92 E--------IDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred E--------eeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 0 0000000001111111111110 1245668899999865 34666665544333455555555 433333
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
.. ......++..+++.++..+.+...+-......+ .+.+..+++.++|.+..
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~--~~al~~ia~~s~G~~R~ 216 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE--DEALRLIARAAEGGMRD 216 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHH
Confidence 22 222356889999999998888776643322222 25567788888887753
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.17 E-value=0.0094 Score=68.69 Aligned_cols=135 Identities=18% Similarity=0.189 Sum_probs=83.0
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
....+.|||..|.|||.|++++.+......+...++... .......+...+.. ...+.+++
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~---------se~f~~~~v~a~~~----------~~~~~Fk~ 172 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLT---------SEDFTNDFVKALRD----------NEMEKFKE 172 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEecc---------HHHHHHHHHHHHHh----------hhHHHHHH
Confidence 467899999999999999999999887776644333211 11222222222211 22455666
Q ss_pred HHcCCCceEEEeCCCChhh----hhHhhcCCC-CCCCCcEEEEEeCCh---------hhhhhcCccceEecCCCCHHHHH
Q 000802 287 RLRRKKVLVVIDDVAHPDH----LRSLVGEPD-WFGPGSQIIITTRNE---------HLLKLHRVRKVYKLEALTYDEAF 352 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~----~~~l~~~~~-~~~~gs~IIiTTR~~---------~v~~~~~~~~~~~l~~L~~~ea~ 352 (1278)
.. .-=++++||++-... -+.+...+. ....|-.||+|++.. .+.......-++++.+++.+...
T Consensus 173 ~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ 250 (408)
T COG0593 173 KY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRL 250 (408)
T ss_pred hh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHH
Confidence 55 444888999864321 122222211 113445899998642 23333445568999999999999
Q ss_pred HHHHHhhcCC
Q 000802 353 RLLCLKAFDT 362 (1278)
Q Consensus 353 ~Lf~~~af~~ 362 (1278)
.++.+++-..
T Consensus 251 aiL~kka~~~ 260 (408)
T COG0593 251 AILRKKAEDR 260 (408)
T ss_pred HHHHHHHHhc
Confidence 9999876433
No 176
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.16 E-value=0.0023 Score=62.88 Aligned_cols=23 Identities=43% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
|.|+|++|+||||+|+.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999875
No 177
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.14 E-value=0.0053 Score=72.26 Aligned_cols=148 Identities=20% Similarity=0.182 Sum_probs=88.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR 289 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 289 (1278)
++.|.|+-++||||+++.+....... .+++........... + .+.+. .+.+.-.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~-l----~d~~~------------------~~~~~~~ 92 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIE-L----LDLLR------------------AYIELKE 92 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhh-H----HHHHH------------------HHHHhhc
Confidence 99999999999999996666555443 344432211111100 1 11111 1111111
Q ss_pred CCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhh------cCccceEecCCCCHHHHHHHHHHhhcCCC
Q 000802 290 RKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKL------HRVRKVYKLEALTYDEAFRLLCLKAFDTH 363 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf~~~af~~~ 363 (1278)
.++..|+||.|.....|+..+..+...++. +|+||+-+...... .|....+++-||+..|-..+-...+
T Consensus 93 ~~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 93 REKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred cCCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 278899999999999999887776655666 89998887654432 2334578999999999876543000
Q ss_pred CCChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 364 KPFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 364 ~~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
. .... +..-+-.-..||.|-++..-
T Consensus 168 ~-~~~~-~~~f~~Yl~~GGfP~~v~~~ 192 (398)
T COG1373 168 E-PSKL-ELLFEKYLETGGFPESVKAD 192 (398)
T ss_pred c-hhHH-HHHHHHHHHhCCCcHHHhCc
Confidence 0 0011 11222333578999877553
No 178
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.0065 Score=69.33 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=59.6
Q ss_pred CCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCC
Q 000802 291 KKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPF 366 (1278)
Q Consensus 291 kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~ 366 (1278)
++-++|+|+++... ....++..+..-.+++.+|+||.+. .+... ......+.+.+++.+++.+.+...... . .
T Consensus 106 ~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~--~-~ 182 (328)
T PRK05707 106 GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPE--S-D 182 (328)
T ss_pred CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhccc--C-C
Confidence 34455779998653 3555554443334577777777765 33322 223457899999999999999765311 1 1
Q ss_pred hhHHHHHHHHHHHcCCCchHHHHH
Q 000802 367 EEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 367 ~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
.+.+..++..++|.|+....+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 133557788999999765544
No 179
>PRK10536 hypothetical protein; Provisional
Probab=97.11 E-value=0.0034 Score=67.44 Aligned_cols=135 Identities=11% Similarity=0.159 Sum_probs=74.8
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH-Hh-hccccccEEeeechhhcc----cCCCHHHH
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD-LI-SHEFDGSSFLADVREKCD----KEGSVISL 258 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~-~~-~~~f~~~~~~~~~~~~~~----~~~~~~~l 258 (1278)
..+.++......+..++.. ..+|.+.|++|.|||+||.+++. .+ .+.|...+.....-+..+ -.|++.+-
T Consensus 55 ~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHH
Confidence 4567788877777777743 24899999999999999999886 33 444554433321111111 02223222
Q ss_pred HHHHHH-------HHhCCCCCCccchhhhH-------H-HHHHHHcCCC---ceEEEeCCCChh--hhhHhhcCCCCCCC
Q 000802 259 QKQLLS-------DLLKLADNSIRNVYDGI-------N-MLRIRLRRKK---VLVVIDDVAHPD--HLRSLVGEPDWFGP 318 (1278)
Q Consensus 259 ~~~ll~-------~l~~~~~~~~~~~~~~~-------~-~l~~~L~~kr---~LlVLDdv~~~~--~~~~l~~~~~~~~~ 318 (1278)
..-.+. .+++.. ...... + .=-.+++++. -+||+|.+.+.+ +...++.. .+.
T Consensus 131 ~~p~~~pi~D~L~~~~~~~-----~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~ 202 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGAS-----FMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGE 202 (262)
T ss_pred HHHHHHHHHHHHHHHhChH-----HHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCC
Confidence 222211 111110 000000 0 0012456654 499999998764 45555544 478
Q ss_pred CcEEEEEeCChhh
Q 000802 319 GSQIIITTRNEHL 331 (1278)
Q Consensus 319 gs~IIiTTR~~~v 331 (1278)
+|++|+|--..++
T Consensus 203 ~sk~v~~GD~~Qi 215 (262)
T PRK10536 203 NVTVIVNGDITQC 215 (262)
T ss_pred CCEEEEeCChhhc
Confidence 9999998876544
No 180
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.0063 Score=75.21 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=104.2
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--c---cccEEeeechhhcccC-CCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--F---DGSSFLADVREKCDKE-GSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f---~~~~~~~~~~~~~~~~-~~~~ 256 (1278)
....+||.+..++.|...+..+ .-...+.++|+.|+||||+|+.+++.+-.. . ++... ..+++..... .++.
T Consensus 14 ~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c-~~c~~i~~g~~~d~~ 91 (576)
T PRK14965 14 TFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVC-PPCVEITEGRSVDVF 91 (576)
T ss_pred CHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCcc-HHHHHHhcCCCCCee
Confidence 4457999999999999888643 223567899999999999999998765321 0 00000 0000000000 0000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHH-HcCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEe-CChhhh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIR-LRRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITT-RNEHLL 332 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTT-R~~~v~ 332 (1278)
. +-+.......++.+..+.+... ..+++-++|+|+++... ..+.|+..+..-.+...+|++| ....+.
T Consensus 92 e--------id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 92 E--------IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred e--------eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 0 0000000111111111111111 12345578999997653 3555555444334566666555 444444
Q ss_pred hh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc-hHHHHH
Q 000802 333 KL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP-LALKVL 390 (1278)
Q Consensus 333 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~l 390 (1278)
.. ......+++.+++.++....+...+-......+ .+.+..+++.++|.. .|+..+
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~--~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISIS--DAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 32 223357789999999988888765533222111 255677888888866 344444
No 181
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.012 Score=70.68 Aligned_cols=161 Identities=20% Similarity=0.239 Sum_probs=94.0
Q ss_pred CCCcccchHHHHHHHHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISL 258 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 258 (1278)
...+-+|.++-.++|.+.|.- ..-.-.+++++|++|+|||.|++.++..+...|-... +..++..++-.
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAEIR------ 393 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAEIR------ 393 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHHhc------
Confidence 345678999999999998863 2334579999999999999999999998887765322 33344433211
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhh------hhHhhcCCC-----CCC--------CC
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDH------LRSLVGEPD-----WFG--------PG 319 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~------~~~l~~~~~-----~~~--------~g 319 (1278)
+....-.....-.+-.-....+-+.-|++||.++.... -.+|+..++ .|. -=
T Consensus 394 ---------GHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDL 464 (782)
T COG0466 394 ---------GHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDL 464 (782)
T ss_pred ---------cccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccch
Confidence 11111111111111111122345677999999976531 222222221 000 12
Q ss_pred c-EEEEEeCCh-h-h-hhhcCccceEecCCCCHHHHHHHHHHhh
Q 000802 320 S-QIIITTRNE-H-L-LKLHRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 320 s-~IIiTTR~~-~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
| .+.|||-+. + + ........++++.+-+++|-.++-+++.
T Consensus 465 S~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 465 SKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred hheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3 334555542 1 1 1223445689999999999998888775
No 182
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.06 E-value=0.00056 Score=52.23 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=33.4
Q ss_pred cEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCcccc
Q 000802 927 EKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFVTLP 965 (1278)
Q Consensus 927 ~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp 965 (1278)
++|+|++|++.+ +|..+++|++|+.|++++|.++.+|
T Consensus 4 ~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 4 EELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred eEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCc
Confidence 999999999965 8888999999999999999999876
No 183
>PRK08181 transposase; Validated
Probab=97.04 E-value=0.0025 Score=70.20 Aligned_cols=35 Identities=20% Similarity=0.102 Sum_probs=27.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.-+.++|++|+|||.||.++.+....+...+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 34889999999999999999987765544445554
No 184
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.01 E-value=0.0026 Score=63.20 Aligned_cols=28 Identities=39% Similarity=0.347 Sum_probs=24.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
+.+.|+|++|+||||+|+.++..+....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~ 30 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG 30 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC
Confidence 5788999999999999999998776554
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.00 E-value=0.013 Score=75.42 Aligned_cols=175 Identities=16% Similarity=0.163 Sum_probs=93.4
Q ss_pred CCcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccC
Q 000802 184 PKELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKE 252 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1278)
.+.+.|++..++++.+++.. +-...+-+.++|++|.||||||+++++.....| +.+ +..+.....
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i-~~~~i~~~~ 252 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISI-NGPEIMSKY 252 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEE-ecHHHhccc
Confidence 34588999999998877642 112346688999999999999999998765432 111 111111110
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh-------------hhhHhhcCCCCC-CC
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD-------------HLRSLVGEPDWF-GP 318 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~-~~ 318 (1278)
.+ .........+.......+.+|++|+++... ....+....... ..
T Consensus 253 --------------~g------~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 253 --------------YG------ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred --------------cc------HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 00 000111122223334567899999985431 122232222211 23
Q ss_pred CcEEEE-EeCChh-hhhh----cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 319 GSQIII-TTRNEH-LLKL----HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 319 gs~IIi-TTR~~~-v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
+..++| ||.... +... ...+..+.+...+.++..+++..+.-.... .++ .....+++.+.|.--
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc--cCHHHHHHhCCCCCH
Confidence 334444 454332 1111 123456788888999988888765422111 111 124567777777653
No 186
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.98 E-value=0.0039 Score=76.65 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=41.7
Q ss_pred CCCcccchHHHHHHHHHhhhcC---CCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 183 IPKELVGIESRLEKLKVHMDTR---SNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
..+.++|.+..++++..++... ....+++.|+|++|.||||+++.++..+.
T Consensus 82 ~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 82 TQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4567999999999999998642 23456899999999999999999997553
No 187
>PRK06526 transposase; Provisional
Probab=96.97 E-value=0.0013 Score=72.03 Aligned_cols=27 Identities=26% Similarity=0.140 Sum_probs=22.7
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.-+.++|++|+|||+||.++......+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 457899999999999999998765443
No 188
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.97 E-value=0.071 Score=61.35 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=98.8
Q ss_pred CceEEEeCCCChh-----------hhhHhhcCCCCCCCCcEEEEEeCChhhhh----hc--CccceEecCCCCHHHHHHH
Q 000802 292 KVLVVIDDVAHPD-----------HLRSLVGEPDWFGPGSQIIITTRNEHLLK----LH--RVRKVYKLEALTYDEAFRL 354 (1278)
Q Consensus 292 r~LlVLDdv~~~~-----------~~~~l~~~~~~~~~gs~IIiTTR~~~v~~----~~--~~~~~~~l~~L~~~ea~~L 354 (1278)
|-+||+|++.... +|...+.. .+-.+||++|-+....+ .+ .+-+.+.+...+.+-|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999984432 24433322 35678898888754433 22 2345788999999999999
Q ss_pred HHHhhcCCCCC-------------C-----hhHHHHHHHHHHHcCCCchHHHHHHhhhcC-CCH-HHHHHHHHHHhcCCC
Q 000802 355 LCLKAFDTHKP-------------F-----EEYVELAESVVKYASGLPLALKVLGSFLFG-RAV-HEWTSALERIKRDPE 414 (1278)
Q Consensus 355 f~~~af~~~~~-------------~-----~~~~~~~~~i~~~~~GlPLal~~lg~~L~~-~~~-~~w~~~l~~l~~~~~ 414 (1278)
...+.-..... . .....-....++..||--.-|..+++.++. .++ +..+.++++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~q------ 298 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQ------ 298 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHH------
Confidence 99887443110 0 123445667788889988888888888863 433 223333321
Q ss_pred hhHHHHHHhccc-------CCcHHHHHHHHHhhcccCCCChHHHHHHHhhC-CCChhHHHHHHHhccccceeC
Q 000802 415 YEILSILQISFD-------GLKEVEKKIFLDVVCFFKGRKRDYVSKILKSC-DFDPVIGIAVLIEKSLLTVDG 479 (1278)
Q Consensus 415 ~~i~~~l~~sy~-------~L~~~~k~~fl~la~f~~~~~~~~l~~~~~~~-~~~~~~~i~~L~~~~Li~~~~ 479 (1278)
.+..+.+.-+. .++-...+.+..+-.+-+.....|=.-++..- .-..+..+..|....||++..
T Consensus 299 -sa~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~~lFk~~~E~~L~aLe~aeLItv~~ 370 (431)
T PF10443_consen 299 -SASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLSPLFKGNDETALRALEQAELITVTT 370 (431)
T ss_pred -HHHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcccccCCCChHHHHHHHHCCcEEEEe
Confidence 12222222221 12222233333333333333333322222211 112466899999999999875
No 189
>PRK09183 transposase/IS protein; Provisional
Probab=96.96 E-value=0.0021 Score=71.05 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=22.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..+.|+|++|+|||+||.++......
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 46779999999999999999876543
No 190
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.95 E-value=0.00016 Score=90.04 Aligned_cols=149 Identities=24% Similarity=0.334 Sum_probs=92.6
Q ss_pred CCceEEEccCCCCCCc-CCCcc--cCCCccEEEeeCCCCC-CcCCcccCccccchhhcccCcccccccccccCCCCccEE
Q 000802 671 NKLILLNLKGCTSLTT-LPGEI--FMKSLKTLVLSGCLKL-RKFPRVAGSMECLRELLLDETDIKEIPRSIGHLSGLVQL 746 (1278)
Q Consensus 671 ~~L~~L~L~~~~~l~~-lp~~~--~l~~L~~L~L~~~~~~-~~lp~~~~~l~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 746 (1278)
.+|++|+++|...+.. -|..+ .+|+|+.|.++|-... .++.....++++|..|++++++++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 4566666655333211 11111 4788888888874432 34556667788888889998888888 778888888888
Q ss_pred EeeCCCCCC-CcccccccCcccccccccCccCCccc------cccccCCCCCCEEEccCCCCcc--cCccccCCCCCCEE
Q 000802 747 TLKGCQNLS-SLPVTISSLKRLRNLELSGCSKLKNF------PQIVTSMEDLSELYLDGTSITE--VPSSIELLTGLELL 817 (1278)
Q Consensus 747 ~L~~~~~l~-~lp~~l~~l~~L~~L~L~~~~~l~~~------p~~~~~~~~L~~L~L~~~~l~~--lp~~l~~l~~L~~L 817 (1278)
.+++-.... .--..+-.|++|+.|++|........ -+.-..+|+|+.|+.+++.+.+ +...+..-++|+.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI 280 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence 887754332 11224567888888888876554322 1223347788888888887762 22223344445444
Q ss_pred eec
Q 000802 818 TLK 820 (1278)
Q Consensus 818 ~L~ 820 (1278)
.+-
T Consensus 281 ~~~ 283 (699)
T KOG3665|consen 281 AAL 283 (699)
T ss_pred hhh
Confidence 433
No 191
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.93 E-value=0.0083 Score=71.93 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=91.9
Q ss_pred CcccchHHHHHHHHHhhh--------cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHH
Q 000802 185 KELVGIESRLEKLKVHMD--------TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~--------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1278)
..+.|.+...+.+..... .+-...+-|.++|++|.|||.+|+++++.+...| +..+........
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~---- 299 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGI---- 299 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccc----
Confidence 467788776666554221 0123456788999999999999999998764332 222222111110
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhh--------------hhHhhcCCCCCCCCcEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDH--------------LRSLVGEPDWFGPGSQI 322 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~--------------~~~l~~~~~~~~~gs~I 322 (1278)
.+. ........++..-...+++|++|+++..-. +..+.........+--|
T Consensus 300 ----------vGe------se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 300 ----------VGE------SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ----------cCh------HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 000 000111112222235789999999874310 11122111111233445
Q ss_pred EEEeCChh-----hhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc
Q 000802 323 IITTRNEH-----LLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 323 IiTTR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1278)
|.||.... +.+....+..+.++..+.++-.++|..+..+....... ......+++.+.|.-
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 56776543 22223456788999999999999998877442211100 112345556666654
No 192
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.92 E-value=0.038 Score=58.51 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=97.6
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHH--
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINM-- 283 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~-- 283 (1278)
++.+++.++|.-|.|||++++++....-..=-..+.+. ...-+...+...+..++...+ -.+.....+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~------~~~~s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~ 119 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID------KPTLSDATLLEAIVADLESQP---KVNVNAVLEQID 119 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec------CcchhHHHHHHHHHHHhccCc---cchhHHHHHHHH
Confidence 45569999999999999999966554332211111221 111224555666666654422 2222222222
Q ss_pred --HHHHH-cCCC-ceEEEeCCCChh--hhhHhh---cCCCCCCCCcEEEEEeCCh--------hhhhhcCccce-EecCC
Q 000802 284 --LRIRL-RRKK-VLVVIDDVAHPD--HLRSLV---GEPDWFGPGSQIIITTRNE--------HLLKLHRVRKV-YKLEA 345 (1278)
Q Consensus 284 --l~~~L-~~kr-~LlVLDdv~~~~--~~~~l~---~~~~~~~~gs~IIiTTR~~--------~v~~~~~~~~~-~~l~~ 345 (1278)
+.+.. +++| +.+++||..... .++.+. ..-.....--+|+..-..+ .....-....+ |++.|
T Consensus 120 ~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 120 RELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 22222 4677 999999986543 344332 2111111112333332221 11111111124 89999
Q ss_pred CCHHHHHHHHHHhhcCCCCCChhH-HHHHHHHHHHcCCCchHHHHHHhh
Q 000802 346 LTYDEAFRLLCLKAFDTHKPFEEY-VELAESVVKYASGLPLALKVLGSF 393 (1278)
Q Consensus 346 L~~~ea~~Lf~~~af~~~~~~~~~-~~~~~~i~~~~~GlPLal~~lg~~ 393 (1278)
++.++...++..+.-+...+.+-+ .+....|.....|.|.++..++..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 999999999888765443332222 356677888999999999887653
No 193
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.91 E-value=0.012 Score=60.50 Aligned_cols=48 Identities=27% Similarity=0.308 Sum_probs=39.0
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
-.++||-++.++.+.-.-. +++..-+.|.||+|+||||-+..+++.+-
T Consensus 26 l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 26 LQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred HHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 3468999999998876653 34667788999999999999999988653
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.87 E-value=0.00048 Score=85.95 Aligned_cols=132 Identities=28% Similarity=0.386 Sum_probs=83.9
Q ss_pred CccEEEeeCCCCC-CCcccccc-cCcccccccccCccCC-ccccccccCCCCCCEEEccCCCCcccCccccCCCCCCEEe
Q 000802 742 GLVQLTLKGCQNL-SSLPVTIS-SLKRLRNLELSGCSKL-KNFPQIVTSMEDLSELYLDGTSITEVPSSIELLTGLELLT 818 (1278)
Q Consensus 742 ~L~~L~L~~~~~l-~~lp~~l~-~l~~L~~L~L~~~~~l-~~~p~~~~~~~~L~~L~L~~~~l~~lp~~l~~l~~L~~L~ 818 (1278)
+|++|++++.... ...|..++ .+|+|++|.+++-... +.+.....++++|..|++++++++.+ ..++.+++|+.|.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLS 201 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHh
Confidence 4555555543322 12222332 4667777776664332 33556667788888888888888877 6688888888888
Q ss_pred ecCCCCCC-cccccccCCCCCCEEEecCCCCchhh------hhhhcCCCCCceeecCCCcccC
Q 000802 819 LKGCKNLT-RLSSSINGLKSLKTLNLSGCSKLENV------LETLGQVESSEQLDKSGTTIKR 874 (1278)
Q Consensus 819 L~~~~~l~-~l~~~~~~l~sL~~L~l~~c~~l~~~------~~~l~~l~~L~~L~L~~n~i~~ 874 (1278)
+.+-.... .--..+.+|++|+.||+|.-...... .+.-..+|+|+.||.+++.+.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 87755443 11234567888999998876544321 2333458889999998887764
No 195
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.86 E-value=0.018 Score=64.77 Aligned_cols=152 Identities=23% Similarity=0.264 Sum_probs=82.5
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhccc-CCCHHHHHHHHHHHHhCCCCCCccchhhhHHHH
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDK-EGSVISLQKQLLSDLLKLADNSIRNVYDGINML 284 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~-~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1278)
..++.++|||++|.|||.+|++++..+...| +..+..+...+ .+......++++.. .
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~----i~vsa~eL~sk~vGEsEk~IR~~F~~------------------A 203 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP----IVMSAGELESENAGEPGKLIRQRYRE------------------A 203 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe----EEEEHHHhhcCcCCcHHHHHHHHHHH------------------H
Confidence 5578999999999999999999999876543 22233332222 12122233322222 1
Q ss_pred HHH--HcCCCceEEEeCCCChh------------hh--hHhhcCCC----------C----CCCCcEEEEEeCChhhhhh
Q 000802 285 RIR--LRRKKVLVVIDDVAHPD------------HL--RSLVGEPD----------W----FGPGSQIIITTRNEHLLKL 334 (1278)
Q Consensus 285 ~~~--L~~kr~LlVLDdv~~~~------------~~--~~l~~~~~----------~----~~~gs~IIiTTR~~~v~~~ 334 (1278)
++. -+++++.|++|+++..- ++ ..|+...+ | ..++..||+||.+...+..
T Consensus 204 ~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDp 283 (413)
T PLN00020 204 ADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYA 283 (413)
T ss_pred HHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCH
Confidence 111 14689999999985321 11 22322110 1 2356677888876554321
Q ss_pred -----cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch
Q 000802 335 -----HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL 385 (1278)
Q Consensus 335 -----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL 385 (1278)
-..+..| ..-+.++-.+++..+.-+. ..+. .-..++++...|-|+
T Consensus 284 ALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~-~l~~---~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 284 PLIRDGRMEKFY--WAPTREDRIGVVHGIFRDD-GVSR---EDVVKLVDTFPGQPL 333 (413)
T ss_pred hHcCCCCCCcee--CCCCHHHHHHHHHHHhccC-CCCH---HHHHHHHHcCCCCCc
Confidence 1223333 3456677777776554332 2221 334556666666654
No 196
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.84 E-value=0.024 Score=73.09 Aligned_cols=53 Identities=17% Similarity=0.332 Sum_probs=41.0
Q ss_pred CCcccchHHHHHHHHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 184 PKELVGIESRLEKLKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
...++|.+.-.+.+.+++.. ......++.++|++|+|||++|+++++.+...|
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 34688999988888876642 222345789999999999999999998875544
No 197
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.81 E-value=0.016 Score=74.43 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=94.0
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
..+.|.+...++|.+.+.. +-...+-+.++|++|.|||++|+++++.....| +.....+.
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~~~l----- 523 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRGPEI----- 523 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEehHHH-----
Confidence 4577888888877776531 112345588999999999999999998765433 11111111
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--------------hhhHhhcCCCCC--C
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--------------HLRSLVGEPDWF--G 317 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~~--~ 317 (1278)
+....+. ........+...-+..+.+|++|+++... ....++..++.. .
T Consensus 524 ---------~~~~vGe------se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 524 ---------LSKWVGE------SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ---------hhcccCc------HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 1110100 00111112222234567899999986431 122333333211 2
Q ss_pred CCcEEEEEeCChhhhhh-----cCccceEecCCCCHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHcCCCc
Q 000802 318 PGSQIIITTRNEHLLKL-----HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP-FEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 318 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlP 384 (1278)
.+..||.||........ ...+..+.++..+.++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 34455666655433221 2346788999999999999997665332211 112 344556666654
No 198
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.78 E-value=0.00018 Score=67.62 Aligned_cols=104 Identities=20% Similarity=0.344 Sum_probs=75.4
Q ss_pred CCEEEecCCCCc--hhhhhhhcCCCCCceeecCCCcccCCCccccccCCCceeecCCCCCCCCCCCcccCCCccccCCCC
Q 000802 838 LKTLNLSGCSKL--ENVLETLGQVESSEQLDKSGTTIKRPSPNIFLMKNFKALSFCGCNGSPSSTSWHLDVPFNLMGKIS 915 (1278)
Q Consensus 838 L~~L~l~~c~~l--~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~l~l~~~~~~~~~ 915 (1278)
+..++|+.|+.. ...+..+.....|+..+|++|.+...++.+.
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft----------------------------------- 73 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT----------------------------------- 73 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-----------------------------------
Confidence 445566666543 2334445556667777888887776654332
Q ss_pred CCcccCCCCCccEEEecCCCCCCCCcccccCCCCCCcEecCCCCcCcccchhhcCCCCCCEeeccCCc
Q 000802 916 CPAALMLPSLSEKLDLSDCCLGEGAIPTDIGNLCLLKELCLSGNNFVTLPASINSLLNLEELKLEDCK 983 (1278)
Q Consensus 916 ~~~~~~l~~lL~~L~Ls~~~l~~~~lp~~l~~l~sL~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 983 (1278)
..+|.. +.|+|++|.+.+ +|..+..++.|+.|+++.|.|...|..+..|.+|-.|+..+|.
T Consensus 74 ----~kf~t~-t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 74 ----IKFPTA-TTLNLANNEISD--VPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred ----hccchh-hhhhcchhhhhh--chHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence 122333 888999999866 8888999999999999999999999888888888888887764
No 199
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.73 E-value=0.0017 Score=67.17 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=25.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.-+.++|..|+|||.||.++.+....+-..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 45889999999999999999986654333345554
No 200
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.0056 Score=75.63 Aligned_cols=119 Identities=19% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCcccchHHHHHHHHHhhhc-------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHH
Q 000802 184 PKELVGIESRLEKLKVHMDT-------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1278)
...++|.+..++.+.+.+.. ...........|+.|||||.||++++..+-+.=+..+-+ ++++...++
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~EkH---- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEKH---- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHHH----
Confidence 35799999999998887752 223456788899999999999999998774432333333 466554333
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCc-eEEEeCCCCh--hhhhHhhcCCC
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKV-LVVIDDVAHP--DHLRSLVGEPD 314 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~ 314 (1278)
-.+.+.+....-..- +.--.+-+..++++| +|.||.|+.. +-++-|+..++
T Consensus 565 -----sVSrLIGaPPGYVGy--eeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 565 -----SVSRLIGAPPGYVGY--EEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred -----HHHHHhCCCCCCcee--ccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 234444433322211 112345566778888 7777999764 44555554443
No 201
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.013 Score=63.48 Aligned_cols=80 Identities=20% Similarity=0.296 Sum_probs=49.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHh----hccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLI----SHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINM 283 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~----~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1278)
-|+|.++|++|.|||+|.+++++++ .++|..+..+. + . -..+..+..++- ...+....+.
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE-i----n----shsLFSKWFsES-------gKlV~kmF~k 240 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE-I----N----SHSLFSKWFSES-------GKLVAKMFQK 240 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE-E----e----hhHHHHHHHhhh-------hhHHHHHHHH
Confidence 5889999999999999999999865 34566555543 1 1 223333333331 1233344556
Q ss_pred HHHHHcCCCc--eEEEeCCCCh
Q 000802 284 LRIRLRRKKV--LVVIDDVAHP 303 (1278)
Q Consensus 284 l~~~L~~kr~--LlVLDdv~~~ 303 (1278)
+.+.+.++.. .+.+|.|+..
T Consensus 241 I~ELv~d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 241 IQELVEDRGNLVFVLIDEVESL 262 (423)
T ss_pred HHHHHhCCCcEEEEEeHHHHHH
Confidence 6666666554 3455888554
No 202
>PRK06921 hypothetical protein; Provisional
Probab=96.68 E-value=0.005 Score=68.22 Aligned_cols=36 Identities=19% Similarity=0.207 Sum_probs=28.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEee
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 243 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 243 (1278)
..-+.++|..|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4568899999999999999999987655 33445554
No 203
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.67 E-value=0.031 Score=71.40 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=42.3
Q ss_pred CCcccchHHHHHHHHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 184 PKELVGIESRLEKLKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
....+|.+.-.++|.+++.. ......++.++|++|+||||+|+.++..+...|
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 45689999999999888863 223456899999999999999999998775544
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.67 E-value=0.027 Score=73.08 Aligned_cols=51 Identities=16% Similarity=0.320 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHhhhcC-------CCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 184 PKELVGIESRLEKLKVHMDTR-------SNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
...++|.+..++.+...+... .....++.++|+.|+|||++|+++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~ 624 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD 624 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhc
Confidence 457899999998888777521 122357889999999999999999986643
No 205
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.67 E-value=0.024 Score=62.98 Aligned_cols=39 Identities=23% Similarity=0.168 Sum_probs=27.5
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 192 SRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.-++++...+..+ +-|.+.|++|+|||++|++++.....
T Consensus 9 ~l~~~~l~~l~~g----~~vLL~G~~GtGKT~lA~~la~~lg~ 47 (262)
T TIGR02640 9 RVTSRALRYLKSG----YPVHLRGPAGTGKTTLAMHVARKRDR 47 (262)
T ss_pred HHHHHHHHHHhcC----CeEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 3344555555432 35679999999999999999986543
No 206
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.66 E-value=0.024 Score=59.49 Aligned_cols=169 Identities=19% Similarity=0.249 Sum_probs=97.8
Q ss_pred CCcccchHHHHHH---HHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHH
Q 000802 184 PKELVGIESRLEK---LKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 184 ~~~~vGr~~~~~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1278)
.+.+||.+....+ |.+.|.. +.-..+-|..+|++|.|||.+|+++++...-.| +. +. .
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~-----l~-vk--------a- 184 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL-----LL-VK--------A- 184 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce-----EE-ec--------h-
Confidence 3578998877654 4455542 334678899999999999999999998654322 11 10 0
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHH---H-cCCCceEEEeCCCChh--------------hhhHhhcCCCC--C
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIR---L-RRKKVLVVIDDVAHPD--------------HLRSLVGEPDW--F 316 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~---L-~~kr~LlVLDdv~~~~--------------~~~~l~~~~~~--~ 316 (1278)
.+++.+ .+.++..++++. . +.-++.+.+|.++... ...+|+..++. .
T Consensus 185 ---t~liGe----------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e 251 (368)
T COG1223 185 ---TELIGE----------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE 251 (368)
T ss_pred ---HHHHHH----------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc
Confidence 111211 111222333322 2 3468999999886532 24455554442 2
Q ss_pred CCCcEEEEEeCChhhhhhc---CccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCC
Q 000802 317 GPGSQIIITTRNEHLLKLH---RVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGL 383 (1278)
Q Consensus 317 ~~gs~IIiTTR~~~v~~~~---~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl 383 (1278)
+.|...|-.|....++... ....-++..--+++|-.+++..++-.-.-+.+. -.+.++++.+|.
T Consensus 252 neGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~---~~~~~~~~t~g~ 318 (368)
T COG1223 252 NEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDA---DLRYLAAKTKGM 318 (368)
T ss_pred CCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcccc---CHHHHHHHhCCC
Confidence 3465666666665554321 223466778889999999998887433222211 145566666664
No 207
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.63 E-value=0.0074 Score=68.68 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=28.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56889999999999999999987765544455554
No 208
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.62 E-value=0.029 Score=61.76 Aligned_cols=198 Identities=19% Similarity=0.167 Sum_probs=106.4
Q ss_pred CcccchH---HHHHHHHHhhhc-CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccccc-----EEeeechhhcccCCCH
Q 000802 185 KELVGIE---SRLEKLKVHMDT-RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS-----SFLADVREKCDKEGSV 255 (1278)
Q Consensus 185 ~~~vGr~---~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~-----~~~~~~~~~~~~~~~~ 255 (1278)
+.+||-. ..++.+++++.. .....+-+.|+|.+|+|||++++++.......++.. ++.. ......+.
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v----q~P~~p~~ 109 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV----QMPPEPDE 109 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE----ecCCCCCh
Confidence 3455533 345667777764 223445688999999999999999997654444321 2221 12334447
Q ss_pred HHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcC-CCceEEEeCCCChh-----hhhHhhcCCCCCC---CCcEEEEEe
Q 000802 256 ISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRR-KKVLVVIDDVAHPD-----HLRSLVGEPDWFG---PGSQIIITT 326 (1278)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~---~gs~IIiTT 326 (1278)
..+...++.++...-.. ..............++. +-=+||+|.+.+.- +-+.++..+...+ .=+-|.+-|
T Consensus 110 ~~~Y~~IL~~lgaP~~~-~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt 188 (302)
T PF05621_consen 110 RRFYSAILEALGAPYRP-RDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGT 188 (302)
T ss_pred HHHHHHHHHHhCcccCC-CCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEecc
Confidence 78888888886543322 23334444445555654 44489999997642 1111111111111 234455555
Q ss_pred CCh--------hhhhhcCccceEecCCCCHH-HHHHHHHHhhc--CCCC-CChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 327 RNE--------HLLKLHRVRKVYKLEALTYD-EAFRLLCLKAF--DTHK-PFEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 327 R~~--------~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~af--~~~~-~~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
++. +++... .++.++....+ |..+|+..... .-.. ..-...+++..|...++|+.--+..+
T Consensus 189 ~~A~~al~~D~QLa~RF---~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 189 REAYRALRTDPQLASRF---EPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHHHHhccCHHHHhcc---CCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 542 222221 24556655544 34444433211 1011 11233578999999999987554443
No 209
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.62 E-value=0.0039 Score=68.13 Aligned_cols=93 Identities=23% Similarity=0.217 Sum_probs=57.3
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCC-------CCCCccc----
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKL-------ADNSIRN---- 276 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-------~~~~~~~---- 276 (1278)
-+-++|.|.+|.||||||+.+++.++.+|+..+++..+.+.... +.++.+.+...-... ...+..-
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~E---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 145 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTRE---GNDLYHEMKESGVLSKTALVYGQMNEPPGARAR 145 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35689999999999999999999998888888888777765332 444444443320000 0000000
Q ss_pred hhhhHHHHHHHH--c-CCCceEEEeCCCCh
Q 000802 277 VYDGINMLRIRL--R-RKKVLVVIDDVAHP 303 (1278)
Q Consensus 277 ~~~~~~~l~~~L--~-~kr~LlVLDdv~~~ 303 (1278)
.....-.+.+++ + ++.+|+|+||+-.-
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 001112234444 3 88999999998543
No 210
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.58 E-value=0.00073 Score=70.81 Aligned_cols=56 Identities=21% Similarity=0.313 Sum_probs=30.1
Q ss_pred cEEEecCCCCCCCCcc----cccCCCCCCcEecCCCCcCcc-----cchhhcCCCCCCEeeccCC
Q 000802 927 EKLDLSDCCLGEGAIP----TDIGNLCLLKELCLSGNNFVT-----LPASINSLLNLEELKLEDC 982 (1278)
Q Consensus 927 ~~L~Ls~~~l~~~~lp----~~l~~l~sL~~L~L~~n~l~~-----lp~~i~~l~~L~~L~L~~c 982 (1278)
+.+.+..|.+....+. ..+..+.+|+.|+|+.|-|+. +-..+...+.|+.|.+.+|
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 6666666665332221 124456677777777776662 2223334445666666666
No 211
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.55 E-value=0.19 Score=56.94 Aligned_cols=94 Identities=14% Similarity=0.094 Sum_probs=60.5
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++... .-..|+..+..-.+++.+|++|.. ..++.. ......+.+.+++.+++.+.+.... .
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 455689999998764 344444443333467777777764 344433 2234578999999999998886531 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKVLG 391 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~lg 391 (1278)
. ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1236678999999998665543
No 212
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.51 E-value=0.028 Score=72.07 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=39.1
Q ss_pred CCcccchHHHHHHHHHhhhcC-------CCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 184 PKELVGIESRLEKLKVHMDTR-------SNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
...++|.+..++.+...+... .....++.++|+.|+|||+||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 457889999888888777531 12345688999999999999999998773
No 213
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.1 Score=59.10 Aligned_cols=107 Identities=14% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++... ....++..+..-.+++.+|++|.+. .++.. ......+.+.+++.+++.+.+.....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~----- 181 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI----- 181 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-----
Confidence 344588899998764 3555555444335667777666654 44433 23345889999999999998865421
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALERI 409 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l 409 (1278)
+ .+..++..++|.|+....+. .....+.++..++.+
T Consensus 182 -~----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l 217 (319)
T PRK06090 182 -T----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQL 217 (319)
T ss_pred -c----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 1 13467889999998765553 233334444444433
No 214
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.47 E-value=0.034 Score=63.99 Aligned_cols=161 Identities=14% Similarity=0.070 Sum_probs=84.7
Q ss_pred cccc-hHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc--cccc-EEe-eechhhcc-cCCCHHHHH
Q 000802 186 ELVG-IESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE--FDGS-SFL-ADVREKCD-KEGSVISLQ 259 (1278)
Q Consensus 186 ~~vG-r~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~--f~~~-~~~-~~~~~~~~-~~~~~~~l~ 259 (1278)
.++| -+.-++.+...+..+ .-.....++|+.|+||||+|+.+.+.+-.. .... |=. ..++.... .+.++..
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~-- 82 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL-- 82 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE--
Confidence 4677 555667777777533 234567899999999999999998765221 0000 000 00000000 0000000
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCChh-h
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNEH-L 331 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~-v 331 (1278)
.. .+...-..++.. .+.+.+ .+.+=++|+|+++... ..+.|+..+..-.+++.+|++|.+.. +
T Consensus 83 -------i~-~~~~~i~id~ir-~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 83 -------VA-PDGQSIKKDQIR-YLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred -------ec-cccccCCHHHHH-HHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00 000000111111 112222 2445578999987654 34555555443356777777776543 3
Q ss_pred hhh-cCccceEecCCCCHHHHHHHHHHh
Q 000802 332 LKL-HRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 332 ~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
... ......+++.+++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 332 223458899999999998888654
No 215
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.45 E-value=0.01 Score=67.45 Aligned_cols=103 Identities=13% Similarity=0.095 Sum_probs=58.9
Q ss_pred HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc-ccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCcc
Q 000802 197 LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD-GSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIR 275 (1278)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~-~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~ 275 (1278)
+.+.+..-.. -+-++|+|.+|+|||||++.+++.+..+.+ ..+++.-+.+.. ..+..+.+.+...+.........
T Consensus 123 vID~l~PiGk-GQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~---~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAPIGK-GQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP---EEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheeecCC-CceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC---CCHHHHHHHHhhhEEeecCCCCH
Confidence 4444443222 245689999999999999999998866553 333444454432 23666777666654432211111
Q ss_pred c----hhhhHHHHHHHH--cCCCceEEEeCCCCh
Q 000802 276 N----VYDGINMLRIRL--RRKKVLVVIDDVAHP 303 (1278)
Q Consensus 276 ~----~~~~~~~l~~~L--~~kr~LlVLDdv~~~ 303 (1278)
. .......+.+++ ++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 1 111111222222 479999999998644
No 216
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.43 E-value=0.017 Score=74.54 Aligned_cols=51 Identities=22% Similarity=0.358 Sum_probs=40.1
Q ss_pred CCcccchHHHHHHHHHhhhc-------CCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 184 PKELVGIESRLEKLKVHMDT-------RSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
...++|.+..++.+.+.+.. ......++.++|+.|+|||.+|++++..+.+
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 45789999999988877742 1223457889999999999999999987643
No 217
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.42 E-value=0.02 Score=62.49 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=93.8
Q ss_pred CCcccchHHHHHHHHHhhhc--CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcc--cCCCHHHHH
Q 000802 184 PKELVGIESRLEKLKVHMDT--RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCD--KEGSVISLQ 259 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~--~~~~~~~l~ 259 (1278)
-..++|-.++-.++..++.. .-++..-|.|+|+.|.|||+|......+ .+.|.....+........ +.. +..+.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~a-l~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIA-LKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHH-HHHHH
Confidence 34699999999999988863 1123345779999999999998666544 233333333332322221 112 45555
Q ss_pred HHHHHHHhCCCCCCccchhhhHHHHHHHHcC------CCceEEEeCCCChh----h--hhHhhcCC-CCCCCCcEEEEEe
Q 000802 260 KQLLSDLLKLADNSIRNVYDGINMLRIRLRR------KKVLVVIDDVAHPD----H--LRSLVGEP-DWFGPGSQIIITT 326 (1278)
Q Consensus 260 ~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~------kr~LlVLDdv~~~~----~--~~~l~~~~-~~~~~gs~IIiTT 326 (1278)
+++..++-.. .....+..+....+-..|+. -++.+|+|.+|--. | +-.+.... ....|-+-|-+||
T Consensus 101 rql~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 101 RQLALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555543222 22223344445555555542 36888888876432 2 22222211 1234667788999
Q ss_pred CChh-------hhhhcCccceEecCCCCHHHHHHHHHHh
Q 000802 327 RNEH-------LLKLHRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 327 R~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
|-.- |-.......++-++.++-++-.++++.-
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 9542 2222222335555666666666555444
No 218
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.40 E-value=0.0014 Score=68.85 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=12.8
Q ss_pred CCCCCCcEecCCCCcCcccc
Q 000802 946 GNLCLLKELCLSGNNFVTLP 965 (1278)
Q Consensus 946 ~~l~sL~~L~L~~n~l~~lp 965 (1278)
..+|-|..|.+.||.|....
T Consensus 300 ~~~p~L~~le~ngNr~~E~~ 319 (388)
T COG5238 300 DAVPLLVDLERNGNRIKELA 319 (388)
T ss_pred cccHHHHHHHHccCcchhHH
Confidence 34556777777777776443
No 219
>PHA00729 NTP-binding motif containing protein
Probab=96.35 E-value=0.0092 Score=63.21 Aligned_cols=27 Identities=33% Similarity=0.242 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+...+.|.|.+|+||||||.++.+++.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445788999999999999999998764
No 220
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.35 E-value=0.013 Score=58.65 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=59.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHH--h--CCC-----CCCc---cc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDL--L--KLA-----DNSI---RN 276 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~--~~~-----~~~~---~~ 276 (1278)
..|-|++-.|.||||+|...+-+...+=..+.|+.-+... ...+ -...++.+ ..+ . +.. .... ..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~-~~~g-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG-WKYG-ELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC-CccC-HHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4677888889999999988886654443334443322221 1112 22222221 000 0 000 0000 01
Q ss_pred hhhhHHHHHHHHcC-CCceEEEeCCCChh-----hhhHhhcCCCCCCCCcEEEEEeCChh
Q 000802 277 VYDGINMLRIRLRR-KKVLVVIDDVAHPD-----HLRSLVGEPDWFGPGSQIIITTRNEH 330 (1278)
Q Consensus 277 ~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTTR~~~ 330 (1278)
..+..+..++.+.. +-=|+|||++-..- +.+.+...+....++..+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12223344445544 44599999984431 22333333333356789999999854
No 221
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.31 E-value=0.006 Score=65.37 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.0
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccccccEEe
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 242 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1278)
.++|+|..|.|||||++.+.....+.|+.....
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~ 47 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLI 47 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEE
Confidence 467999999999999999998899999655444
No 222
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.29 E-value=0.011 Score=68.90 Aligned_cols=46 Identities=26% Similarity=0.319 Sum_probs=38.0
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..+++.+..++.+...|.. .+.+.++|++|+|||++|+++++.+..
T Consensus 175 ~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 175 NDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred hcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4578888889998888864 346788999999999999999987753
No 223
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.29 E-value=0.018 Score=64.99 Aligned_cols=55 Identities=16% Similarity=0.185 Sum_probs=35.7
Q ss_pred chHHHHHHHHHhhhcC--CCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 189 GIESRLEKLKVHMDTR--SNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
++...++....++..- ....+-+.++|..|+|||.||.++++.+..+-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4444444444455421 123456889999999999999999998765433345554
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.28 E-value=0.011 Score=64.38 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=35.6
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.|.++|..+-..-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 455556544455679999999999999999999876655555566665
No 225
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.017 Score=71.59 Aligned_cols=154 Identities=16% Similarity=0.150 Sum_probs=87.0
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-cc-----ccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FD-----GSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~-----~~~~~~~~~~~~~~~~~~~ 256 (1278)
.-++++||+.+++++...|.....+-.+ ++|.+|+|||++|.-++.++... -+ ..++-.++...
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L-------- 237 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL-------- 237 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH--------
Confidence 4467999999999999999865444333 68999999999999999876432 21 11222222111
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc-CCCceEEEeCCCCh-----------hhhhHhhcCCCCCCCCcEEEE
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR-RKKVLVVIDDVAHP-----------DHLRSLVGEPDWFGPGSQIII 324 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~~~-----------~~~~~l~~~~~~~~~gs~IIi 324 (1278)
.....- -.+.++....+.+.++ .+++.+++|.+... +.-.-+.+.+. .|.--.|-.
T Consensus 238 ----------vAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGA 305 (786)
T COG0542 238 ----------VAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGA 305 (786)
T ss_pred ----------hccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEe
Confidence 111111 1233333333333333 45899999987542 12222333332 122223445
Q ss_pred EeCChhh---h---hhcCccceEecCCCCHHHHHHHHHHh
Q 000802 325 TTRNEHL---L---KLHRVRKVYKLEALTYDEAFRLLCLK 358 (1278)
Q Consensus 325 TTR~~~v---~---~~~~~~~~~~l~~L~~~ea~~Lf~~~ 358 (1278)
||-++.- - .....-+.+.|...+.+++..++...
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 5554321 0 11123357889999999999998643
No 226
>PRK04132 replication factor C small subunit; Provisional
Probab=96.25 E-value=0.17 Score=64.35 Aligned_cols=150 Identities=10% Similarity=0.109 Sum_probs=86.7
Q ss_pred cCCCchhHHHHHHHHHhh-ccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCce
Q 000802 216 MGGLGKTTLARVVYDLIS-HEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVL 294 (1278)
Q Consensus 216 ~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~L 294 (1278)
|.++||||+|.++++.+- ..+...+.-.+.... .+ +.. .++++......... -..+.-+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~---rg-id~-IR~iIk~~a~~~~~---------------~~~~~KV 633 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDE---RG-INV-IREKVKEFARTKPI---------------GGASFKI 633 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCc---cc-HHH-HHHHHHHHHhcCCc---------------CCCCCEE
Confidence 889999999999998763 223322222222211 11 322 22332222110000 0124569
Q ss_pred EEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHH
Q 000802 295 VVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYV 370 (1278)
Q Consensus 295 lVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~ 370 (1278)
+|+|+++... +...|+..........++|++|.+. .+... ......+.+.+++.++..+.+.+.+-...-..+ .
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~--~ 711 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELT--E 711 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCC--H
Confidence 9999998764 4555655554444567777766654 33222 223468899999999998888766533222111 3
Q ss_pred HHHHHHHHHcCCCchHH
Q 000802 371 ELAESVVKYASGLPLAL 387 (1278)
Q Consensus 371 ~~~~~i~~~~~GlPLal 387 (1278)
+....|++.++|.+..+
T Consensus 712 e~L~~Ia~~s~GDlR~A 728 (846)
T PRK04132 712 EGLQAILYIAEGDMRRA 728 (846)
T ss_pred HHHHHHHHHcCCCHHHH
Confidence 56788999999988543
No 227
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.24 E-value=0.042 Score=65.55 Aligned_cols=153 Identities=16% Similarity=0.190 Sum_probs=85.7
Q ss_pred cccchHHHHHHHHHhhh-----------cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCC
Q 000802 186 ELVGIESRLEKLKVHMD-----------TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGS 254 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 254 (1278)
.+=|.++...+|..... .+-...+-|..+|++|.|||++|+++++.-...|-.. .
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv------k-------- 500 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV------K-------- 500 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec------c--------
Confidence 44557777777765442 1234567788999999999999999998765554322 0
Q ss_pred HHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh-------------hhhHhhcCCCCCCCCcE
Q 000802 255 VISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD-------------HLRSLVGEPDWFGPGSQ 321 (1278)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~~~gs~ 321 (1278)
-.. +++...++ ......+.+++.-+--+.+|.||.++... .+..|+...+.......
T Consensus 501 gpE----L~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~ 570 (693)
T KOG0730|consen 501 GPE----LFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKN 570 (693)
T ss_pred CHH----HHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCc
Confidence 001 11111110 01111112222223456788888775432 14445544443333333
Q ss_pred EEE---EeCChhhhhh----cCccceEecCCCCHHHHHHHHHHhhcCC
Q 000802 322 III---TTRNEHLLKL----HRVRKVYKLEALTYDEAFRLLCLKAFDT 362 (1278)
Q Consensus 322 IIi---TTR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~~ 362 (1278)
|+| |-|...+-.. -..++++.++.-+.+...++|+.++-+-
T Consensus 571 V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkm 618 (693)
T KOG0730|consen 571 VLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKM 618 (693)
T ss_pred EEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcC
Confidence 433 3444333222 2357788898888888899999988443
No 228
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.24 E-value=0.016 Score=63.61 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=27.8
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
...-+.++|.+|+|||.||.++.+.+...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4456889999999999999999998874323344443
No 229
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.21 E-value=0.00065 Score=83.59 Aligned_cols=34 Identities=38% Similarity=0.531 Sum_probs=20.2
Q ss_pred ccccceecccCCccccc---CCCCCCCCCccEEEEcC
Q 000802 623 LNMLKVMKLSHSENLIK---TPNFTEVPNLEELDLEG 656 (1278)
Q Consensus 623 l~~L~~L~Ls~~~~~~~---~~~~~~l~~L~~L~L~~ 656 (1278)
.+.|+.+.+..+..... .+....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 55666666666654443 23355666777777766
No 230
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.061 Score=63.27 Aligned_cols=153 Identities=18% Similarity=0.149 Sum_probs=85.9
Q ss_pred CCcccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 184 PKELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
...+=|++..+.++.+++.. +-...|=|.++|++|.|||.||++++....-.|-... .
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~is----A-------- 256 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS----A-------- 256 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeec----c--------
Confidence 34678999999998887753 1234567889999999999999999987653322111 0
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--------h-----hhHhhcCCC------
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--------H-----LRSLVGEPD------ 314 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--------~-----~~~l~~~~~------ 314 (1278)
-.+.+.+.+ .......+.+.+.-..-++++++|+++... + ...|+...+
T Consensus 257 ------peivSGvSG------ESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~ 324 (802)
T KOG0733|consen 257 ------PEIVSGVSG------ESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEK 324 (802)
T ss_pred ------hhhhcccCc------ccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccc
Confidence 011111111 111122223333345679999999986532 1 222322221
Q ss_pred CCCCCcEEEE-EeCChhhhhh----cCccceEecCCCCHHHHHHHHHHhhc
Q 000802 315 WFGPGSQIII-TTRNEHLLKL----HRVRKVYKLEALTYDEAFRLLCLKAF 360 (1278)
Q Consensus 315 ~~~~gs~IIi-TTR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af 360 (1278)
..|.+.-||- |+|...+-.. ...++-+.+..-+..+-.+++...+-
T Consensus 325 ~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 325 TKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICR 375 (802)
T ss_pred cCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHh
Confidence 1122322332 5554433222 23456778887777777777766553
No 231
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.05 Score=65.06 Aligned_cols=159 Identities=17% Similarity=0.147 Sum_probs=84.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
..-|.|.|..|+|||+||+++++.+...-.+.+-+.++..... ..+..+|+.+ ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~--~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG--SSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc--hhHHHHHHHH------------------HHHHHHH
Confidence 4568899999999999999999988754433333333333211 1144444332 1234456
Q ss_pred HcCCCceEEEeCCCChh--------hh-------hHh----hcCCCCCCCCcE--EEEEeCChhhhh-----hcCccceE
Q 000802 288 LRRKKVLVVIDDVAHPD--------HL-------RSL----VGEPDWFGPGSQ--IIITTRNEHLLK-----LHRVRKVY 341 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~--------~~-------~~l----~~~~~~~~~gs~--IIiTTR~~~v~~-----~~~~~~~~ 341 (1278)
+...+-+|||||++-.- || ..+ ...+ ...+.+ +|-|....+-.. ..-...+.
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y--~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIY--LKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHH--HccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 67789999999985432 11 111 1111 123444 333333322211 11223467
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCC-chHHHHH
Q 000802 342 KLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGL-PLALKVL 390 (1278)
Q Consensus 342 ~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~l 390 (1278)
.+..+...+-.++++...-+. .. ....+...-+..+|+|. |.-+.++
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~-~~-~~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKN-LS-DITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhh-hh-hhhhHHHHHHHHhcCCccchhHHHH
Confidence 888999888888876554222 21 11122223367777773 4444443
No 232
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.15 E-value=0.017 Score=65.46 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=40.8
Q ss_pred cccchHHHHHHHHHhhhcC----CCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 186 ELVGIESRLEKLKVHMDTR----SNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.++|+++.++++.+++... +...++++++|++|.||||||+++.+.+.
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 7999999999999988641 33568899999999999999999997653
No 233
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.14 E-value=0.0088 Score=62.65 Aligned_cols=117 Identities=21% Similarity=0.299 Sum_probs=51.8
Q ss_pred CeeEEEEEecCCCchhHHHHHHHH-Hh-hccccccEEeeechhhcccC----CCHHHHHHHH---HHHHhCCCCCCccch
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYD-LI-SHEFDGSSFLADVREKCDKE----GSVISLQKQL---LSDLLKLADNSIRNV 277 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~-~~-~~~f~~~~~~~~~~~~~~~~----~~~~~l~~~l---l~~l~~~~~~~~~~~ 277 (1278)
+..++.+.|++|.|||.||.+.+- .+ .+.|+..++....-+..+.- +++.+-..-. +.+.+..-- .
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~-----~ 92 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELF-----G 92 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHh-----C
Confidence 345899999999999999988774 33 46677666654333211111 1111110000 011111100 0
Q ss_pred hhhHHHHH----------HHHcCC---CceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCChhh
Q 000802 278 YDGINMLR----------IRLRRK---KVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNEHL 331 (1278)
Q Consensus 278 ~~~~~~l~----------~~L~~k---r~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~v 331 (1278)
....+.+. ..++++ ...||+|++.+. +++..++.. .+.||+||++--..+.
T Consensus 93 ~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 93 KEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQI 158 (205)
T ss_dssp TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE-----
T ss_pred hHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCceee
Confidence 01111111 123443 569999999765 467777765 3789999999876544
No 234
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.11 E-value=0.022 Score=74.16 Aligned_cols=51 Identities=20% Similarity=0.347 Sum_probs=40.2
Q ss_pred CCcccchHHHHHHHHHhhhcC------C-CCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 184 PKELVGIESRLEKLKVHMDTR------S-NDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
...++|.+..++.+...+... . ....++.++|+.|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 457899999999988887631 1 12457889999999999999999987644
No 235
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.053 Score=62.53 Aligned_cols=126 Identities=17% Similarity=0.139 Sum_probs=75.2
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
.....+.+.|++|+|||+||..++. ...|+.+-.++ ... -.| + +..+....++
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS---pe~-miG-~--------------------sEsaKc~~i~ 588 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS---PED-MIG-L--------------------SESAKCAHIK 588 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC---hHH-ccC-c--------------------cHHHHHHHHH
Confidence 4566788999999999999998875 56777554432 110 000 0 1111122222
Q ss_pred H----HHcCCCceEEEeCCCChhhhhHhhcC---------------CCCCCCCcEEEEEeCChhhhhhcCc----cceEe
Q 000802 286 I----RLRRKKVLVVIDDVAHPDHLRSLVGE---------------PDWFGPGSQIIITTRNEHLLKLHRV----RKVYK 342 (1278)
Q Consensus 286 ~----~L~~kr~LlVLDdv~~~~~~~~l~~~---------------~~~~~~gs~IIiTTR~~~v~~~~~~----~~~~~ 342 (1278)
+ .-+..--.||+||++..-+|-.+.+. .+..|..--|+-||....++..++. ...+.
T Consensus 589 k~F~DAYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~ 668 (744)
T KOG0741|consen 589 KIFEDAYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIH 668 (744)
T ss_pred HHHHHhhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheee
Confidence 2 33445678999999877654433222 2212223334557777888888764 35788
Q ss_pred cCCCCH-HHHHHHHHHh
Q 000802 343 LEALTY-DEAFRLLCLK 358 (1278)
Q Consensus 343 l~~L~~-~ea~~Lf~~~ 358 (1278)
|+.++. ++..+.++..
T Consensus 669 Vpnl~~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEEL 685 (744)
T ss_pred cCccCchHHHHHHHHHc
Confidence 888887 6677766553
No 236
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.12 Score=63.74 Aligned_cols=179 Identities=16% Similarity=0.236 Sum_probs=105.4
Q ss_pred CCCCcccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhccc
Q 000802 182 KIPKELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDK 251 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~ 251 (1278)
....++.|.++..++|++...- +..-++=|.++|++|.|||-||++++-.-. +=|+.....
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS---- 378 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS---- 378 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH----
Confidence 3456789998877777665531 223456688999999999999999986432 112221111
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh-----------------hhhHhhcCCC
Q 000802 252 EGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD-----------------HLRSLVGEPD 314 (1278)
Q Consensus 252 ~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~-----------------~~~~l~~~~~ 314 (1278)
++...+.+... . ...+.....-...++.|.+|+++... .+..++...+
T Consensus 379 ---------EFvE~~~g~~a---s---rvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 379 ---------EFVEMFVGVGA---S---RVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred ---------HHHHHhcccch---H---HHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 11111111000 0 00111222223567888888875421 2556666655
Q ss_pred CCCCCcEEE--EEeCChhhh-----hhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 315 WFGPGSQII--ITTRNEHLL-----KLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 315 ~~~~gs~II--iTTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
.+..+..|| -+|+...++ +--..++.+.++.-+.....++|..|+-+.... .+..++++ ++...-|.+-|
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 454444333 345443332 223456788999999999999999998654443 45556777 88999998865
No 237
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.07 E-value=0.12 Score=58.67 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=59.5
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCCh-hhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNE-HLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++... ....|+..+..-.+++.+|++|... .++.. ......+.+.+++.+++.+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~~---- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSSA---- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhcc----
Confidence 455588899998764 3555555444335677777777654 44433 223468899999999999998776411
Q ss_pred ChhHHHHHHHHHHHcCCCchHH
Q 000802 366 FEEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal 387 (1278)
+ ...+...+..++|.|+..
T Consensus 182 -~--~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 -E--ISEILTALRINYGRPLLA 200 (325)
T ss_pred -C--hHHHHHHHHHcCCCHHHH
Confidence 1 123556788899999643
No 238
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.06 E-value=0.084 Score=66.41 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=82.5
Q ss_pred cccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCH
Q 000802 186 ELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSV 255 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 255 (1278)
.+.|.+...+++.+.+.. +..-.+-+.++|++|.||||+|+.++......| +.....+.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f----~~is~~~~------- 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF----FTISGSDF------- 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE----EEEehHHh-------
Confidence 466777666665554431 011123488999999999999999988665433 11111110
Q ss_pred HHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC--C
Q 000802 256 ISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF--G 317 (1278)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~--~ 317 (1278)
... ..+. ........+.......+.+|++|+++..- .+..++...+.+ .
T Consensus 222 ---~~~----~~g~------~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 222 ---VEM----FVGV------GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred ---HHh----hhcc------cHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 000 0000 00111122222334568899999986641 123333222222 2
Q ss_pred CCcEEEEEeCChhhhhh-----cCccceEecCCCCHHHHHHHHHHhhcC
Q 000802 318 PGSQIIITTRNEHLLKL-----HRVRKVYKLEALTYDEAFRLLCLKAFD 361 (1278)
Q Consensus 318 ~gs~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1278)
.+.-+|.||...+.... -..++.+.+...+.++..+++..+.-+
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 34455557766543321 234667889999999999998877643
No 239
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.05 E-value=0.29 Score=56.01 Aligned_cols=91 Identities=18% Similarity=0.226 Sum_probs=58.3
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++... ....|+..+..-.+++.+|++|.+ ..++.. ......+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----C-
Confidence 344588899998764 456666555544567766655554 445433 2334688999999999999997652 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
.+ ...++..++|.|+....+
T Consensus 206 ~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755444
No 240
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.039 Score=57.38 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=31.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEe
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 242 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1278)
...+|.+.|+.|.||||+|+.++..+..++...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEE
Confidence 446899999999999999999999988777777666
No 241
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.05 E-value=0.0054 Score=59.32 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+|+|.|++|+||||+|+.+++++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 242
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.04 E-value=0.04 Score=71.61 Aligned_cols=117 Identities=19% Similarity=0.277 Sum_probs=65.3
Q ss_pred CCcccchHHHHHHHHHhhhc-------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHH
Q 000802 184 PKELVGIESRLEKLKVHMDT-------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 256 (1278)
...++|.+..++.+...+.. .......+.++|+.|+|||+||+++++.+-..-.. +...++.+....+. +
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~-~~~~d~s~~~~~~~-~- 584 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDA-MIRLDMSEYMEKHT-V- 584 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccc-eEEEEchhcccccc-H-
Confidence 46799999999998887752 11223467789999999999999999876432222 22223433322221 1
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCC-ceEEEeCCCChh--hhhHhhcC
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKK-VLVVIDDVAHPD--HLRSLVGE 312 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~~--~~~~l~~~ 312 (1278)
..+.+....-. . .+....+.+.++.++ .+|+||+++... .++.|+..
T Consensus 585 -------~~l~g~~~gyv-g-~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~ 634 (821)
T CHL00095 585 -------SKLIGSPPGYV-G-YNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQI 634 (821)
T ss_pred -------HHhcCCCCccc-C-cCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHH
Confidence 11122111100 0 011123455556555 488899998653 34444443
No 243
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.04 E-value=0.18 Score=60.76 Aligned_cols=200 Identities=15% Similarity=0.149 Sum_probs=114.9
Q ss_pred CCCCcccchHHHHHHHHHhhhc--CC-CCeeEEEEEecCCCchhHHHHHHHHHhh---c-----cccccEEeeechhhcc
Q 000802 182 KIPKELVGIESRLEKLKVHMDT--RS-NDVRMIGIWGMGGLGKTTLARVVYDLIS---H-----EFDGSSFLADVREKCD 250 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~---~-----~f~~~~~~~~~~~~~~ 250 (1278)
.++..+-+|+.+..+|...+.. .. ...+.+-|.|.+|.|||..+..|.+.+. . .|+ .+.+..+
T Consensus 393 ~vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm----- 466 (767)
T KOG1514|consen 393 AVPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGL----- 466 (767)
T ss_pred hccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcce-----
Confidence 4677889999999999998863 22 3345888999999999999999998553 2 233 2233222
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc-----CCCceEEEeCCCChhh--hhHhhcCCCCC-CCCcEE
Q 000802 251 KEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR-----RKKVLVVIDDVAHPDH--LRSLVGEPDWF-GPGSQI 322 (1278)
Q Consensus 251 ~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~--~~~l~~~~~~~-~~gs~I 322 (1278)
+-....++...|...+-+.. ..+....+.+..+.. .+..+|++|+++..-. -+-+-..+.|- .++|++
T Consensus 467 ~l~~~~~~Y~~I~~~lsg~~----~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKL 542 (767)
T KOG1514|consen 467 RLASPREIYEKIWEALSGER----VTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKL 542 (767)
T ss_pred eecCHHHHHHHHHHhcccCc----ccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCce
Confidence 11225666677776654433 234445566666654 3567888898765422 11222233332 467877
Q ss_pred EEEeCCh-----------hhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCC-ChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 323 IITTRNE-----------HLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKP-FEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 323 IiTTR~~-----------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~-~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
+|-+=.. .+...++. ..+..++-+.++-.++...+.-+...- ....+-++++|+...|..-.|+.+.
T Consensus 543 vvi~IaNTmdlPEr~l~nrvsSRlg~-tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 543 VVIAIANTMDLPERLLMNRVSSRLGL-TRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEEEecccccCHHHHhccchhhhccc-eeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 6654321 11111122 245677778888887777665433211 1222334555555555555555544
Q ss_pred Hh
Q 000802 391 GS 392 (1278)
Q Consensus 391 g~ 392 (1278)
-+
T Consensus 622 ~R 623 (767)
T KOG1514|consen 622 RR 623 (767)
T ss_pred HH
Confidence 33
No 244
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.04 E-value=0.082 Score=62.52 Aligned_cols=29 Identities=28% Similarity=0.335 Sum_probs=25.1
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+|.++|.+|+||||.|..++..+..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46799999999999999999998877544
No 245
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.04 E-value=0.26 Score=56.98 Aligned_cols=45 Identities=18% Similarity=0.366 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhhcCC-CCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 191 ESRLEKLKVHMDTRS-NDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 191 ~~~~~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
+.-.+.|.+.+...+ ....+|+|.|.=|+||||+.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344566777776543 678899999999999999999999888766
No 246
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.03 E-value=0.24 Score=59.21 Aligned_cols=186 Identities=17% Similarity=0.236 Sum_probs=104.1
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc----cc--ccEEeeechhhcccCCCHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE----FD--GSSFLADVREKCDKEGSVI 256 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~----f~--~~~~~~~~~~~~~~~~~~~ 256 (1278)
...++||-+.-...|...+..+. -.......|+-|+||||+|+-++..+--. .+ ..|.. +.+. .. +...
T Consensus 14 ~F~evvGQe~v~~~L~nal~~~r-i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~--Ck~I-~~-g~~~ 88 (515)
T COG2812 14 TFDDVVGQEHVVKTLSNALENGR-IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS--CKEI-NE-GSLI 88 (515)
T ss_pred cHHHhcccHHHHHHHHHHHHhCc-chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh--hHhh-hc-CCcc
Confidence 34568999999999999886532 23445689999999999999998754111 11 00110 0110 00 0000
Q ss_pred HHHHHHHHHHhCCCCCCccchhhhHHHHHHHH-----cCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCCh
Q 000802 257 SLQKQLLSDLLKLADNSIRNVYDGINMLRIRL-----RRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNE 329 (1278)
Q Consensus 257 ~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~ 329 (1278)
++.. +-...+....+ ++.+.+.. +++.=+.|+|.|.-. ..+..|+..+..-.+....|..|.+.
T Consensus 89 DviE-----iDaASn~gVdd----iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 89 DVIE-----IDAASNTGVDD----IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred cchh-----hhhhhccChHH----HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 0000 00001111111 22222222 234458899999755 45888887766445666667766665
Q ss_pred h-hhh-hcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCc
Q 000802 330 H-LLK-LHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLP 384 (1278)
Q Consensus 330 ~-v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlP 384 (1278)
+ +.. .....+.|.++.++.++-...+...+-...-..+ .+...-|++..+|-.
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e--~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE--EDALSLIARAAEGSL 214 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC--HHHHHHHHHHcCCCh
Confidence 3 322 2334568899999999988888776643332222 244555666666644
No 247
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.02 E-value=0.027 Score=71.30 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHhhhc-------CCCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 184 PKELVGIESRLEKLKVHMDT-------RSNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
...++|.+..++.|...+.. .......+.++|+.|+|||++|+.++..+.
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999988887762 122345788999999999999999988773
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.01 E-value=0.014 Score=61.38 Aligned_cols=28 Identities=25% Similarity=0.339 Sum_probs=24.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
++++.++|+.|+||||.+.+++.+.+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~ 28 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK 28 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc
Confidence 3689999999999999998888766655
No 249
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.99 E-value=0.01 Score=60.21 Aligned_cols=103 Identities=25% Similarity=0.267 Sum_probs=57.3
Q ss_pred CccEEEeeCCCCCCCcccccccCcccccccccCccCCccccccccCCCCCCEEEccCCCCcccCc--cccCCCCCCEEee
Q 000802 742 GLVQLTLKGCQNLSSLPVTISSLKRLRNLELSGCSKLKNFPQIVTSMEDLSELYLDGTSITEVPS--SIELLTGLELLTL 819 (1278)
Q Consensus 742 ~L~~L~L~~~~~l~~lp~~l~~l~~L~~L~L~~~~~l~~~p~~~~~~~~L~~L~L~~~~l~~lp~--~l~~l~~L~~L~L 819 (1278)
+...++|++|.... ++ .+..++.|.+|.+.+|.+...-|..-..+++|..|.|.+|++.++-. .+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~-l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhh-cc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 44455555544221 11 23355566666666666555555555556667777777777765533 3556677777777
Q ss_pred cCCCCCCc---ccccccCCCCCCEEEecCC
Q 000802 820 KGCKNLTR---LSSSINGLKSLKTLNLSGC 846 (1278)
Q Consensus 820 ~~~~~l~~---l~~~~~~l~sL~~L~l~~c 846 (1278)
-+|+.-.. =..-+..+|+|+.|++.+-
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66653211 1122455667777766653
No 250
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.98 E-value=0.015 Score=59.38 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=25.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
++.|+|.+|.||||+|..++.....+-...+|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999887655434444443
No 251
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=95.97 E-value=0.14 Score=58.81 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=59.8
Q ss_pred CCCceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCC-hhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRN-EHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~-~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++... .-..|+..+..-.+++.+|++|.+ ..++.. ......+.+.+++.+++.+.+.... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~---~ 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T---M 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C---C
Confidence 456688999988764 345555444433567777776665 444433 2334578999999999998886542 1 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKV 389 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~ 389 (1278)
. .+.+..++..++|.|.....
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al~ 203 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAALA 203 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHHH
Confidence 1 13366789999999964433
No 252
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.91 E-value=0.022 Score=61.56 Aligned_cols=49 Identities=14% Similarity=0.162 Sum_probs=35.4
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..|..+|..+=..-.++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4456666544455689999999999999999999876654434455653
No 253
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.0024 Score=78.56 Aligned_cols=80 Identities=31% Similarity=0.459 Sum_probs=39.5
Q ss_pred CCCCCEEEccCCC-Cccc--CccccCCCCCCEEeecCCCCCCc--ccccccCCCCCCEEEecCCCCchh--hhhhhcCCC
Q 000802 788 MEDLSELYLDGTS-ITEV--PSSIELLTGLELLTLKGCKNLTR--LSSSINGLKSLKTLNLSGCSKLEN--VLETLGQVE 860 (1278)
Q Consensus 788 ~~~L~~L~L~~~~-l~~l--p~~l~~l~~L~~L~L~~~~~l~~--l~~~~~~l~sL~~L~l~~c~~l~~--~~~~l~~l~ 860 (1278)
+.+|+.|+++.+. ++.. ......+++|+.|.+.+|..++. +-.....+++|++|++++|..... +.....+++
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~ 321 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCP 321 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCc
Confidence 3455555555544 2211 11112256677777666664322 223334566677777777766522 333344455
Q ss_pred CCceeec
Q 000802 861 SSEQLDK 867 (1278)
Q Consensus 861 ~L~~L~L 867 (1278)
+|+.|.+
T Consensus 322 ~l~~l~~ 328 (482)
T KOG1947|consen 322 NLRELKL 328 (482)
T ss_pred chhhhhh
Confidence 5555443
No 254
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.83 E-value=0.034 Score=56.89 Aligned_cols=45 Identities=24% Similarity=0.338 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 187 LVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 187 ~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
+||....+.++.+.+..-.....-|.|+|..|.||+.+|+++++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 467777777777766542222355679999999999999999873
No 255
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.024 Score=67.70 Aligned_cols=53 Identities=21% Similarity=0.362 Sum_probs=44.4
Q ss_pred CcccchHHHHHHHHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc
Q 000802 185 KELVGIESRLEKLKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 237 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1278)
+.-+|+++-.++|.+.+.- +.-+-++++.+|++|||||.+|+.++..+...|-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4678999999999988862 4456789999999999999999999998876654
No 256
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.82 E-value=0.0087 Score=58.44 Aligned_cols=40 Identities=30% Similarity=0.350 Sum_probs=30.3
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcc-cccc-EEeeechhh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHE-FDGS-SFLADVREK 248 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~-~~~~~~~~~ 248 (1278)
.-|+|.||+|+||||+++.+.+.++.. |... ++...+++.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~g 47 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREG 47 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecC
Confidence 458899999999999999999988765 6544 444445543
No 257
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.081 Score=62.30 Aligned_cols=129 Identities=18% Similarity=0.177 Sum_probs=78.0
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
..=|.+||++|.|||-||++|++.-..+|- . |.. ..++... .++ ........+++.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi-----s-VKG--------PELlNkY----VGE------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI-----S-VKG--------PELLNKY----VGE------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE-----e-ecC--------HHHHHHH----hhh------HHHHHHHHHHHh
Confidence 445789999999999999999997765543 2 211 1222222 111 111222233333
Q ss_pred HcCCCceEEEeCCCChh-------------hhhHhhcCCCCC--CCCcEEEEEeCChhh-----hhhcCccceEecCCCC
Q 000802 288 LRRKKVLVVIDDVAHPD-------------HLRSLVGEPDWF--GPGSQIIITTRNEHL-----LKLHRVRKVYKLEALT 347 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~ 347 (1278)
-..-+++|.+|.++..- -+..|+..++.. ..|.-||-.|..+++ ++-...+....|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 34679999999986542 144555554422 235555655544333 2223456788999999
Q ss_pred HHHHHHHHHHhhc
Q 000802 348 YDEAFRLLCLKAF 360 (1278)
Q Consensus 348 ~~ea~~Lf~~~af 360 (1278)
.+|-.++++..+-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988875
No 258
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.77 E-value=0.015 Score=62.37 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=33.5
Q ss_pred hhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 200 HMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 200 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+|..+-..-+++.|+|++|+|||++|.+++......-..++|+.
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 44444445689999999999999999998876655556677775
No 259
>PRK06696 uridine kinase; Validated
Probab=95.75 E-value=0.014 Score=63.26 Aligned_cols=46 Identities=24% Similarity=0.247 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhhc-CCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 190 IESRLEKLKVHMDT-RSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 190 r~~~~~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
|++.+++|.+.+.. ......+|+|.|.+|.||||+|+++.+.+...
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 56677777776653 44567899999999999999999999877543
No 260
>PRK04296 thymidine kinase; Provisional
Probab=95.71 E-value=0.038 Score=58.06 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=59.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeee-chhhcccCCCHHHHHHHHHHHHhCCCCC--CccchhhhHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLAD-VREKCDKEGSVISLQKQLLSDLLKLADN--SIRNVYDGINMLR 285 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~-~~~~~~~~~~~~~l~~~ll~~l~~~~~~--~~~~~~~~~~~l~ 285 (1278)
.++.|+|..|.||||+|..++.+...+...+.++.. ... +.+ .. .+...+ +..-. ......+....++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~---~~~-~~----~i~~~l-g~~~~~~~~~~~~~~~~~~~ 73 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDD---RYG-EG----KVVSRI-GLSREAIPVSSDTDIFELIE 73 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccc---ccc-CC----cEecCC-CCcccceEeCChHHHHHHHH
Confidence 477899999999999999998877555443333321 010 111 11 111111 10000 0122233334444
Q ss_pred HHHcCCCceEEEeCCCCh--hhhhHhhcCCCCCCCCcEEEEEeCChh
Q 000802 286 IRLRRKKVLVVIDDVAHP--DHLRSLVGEPDWFGPGSQIIITTRNEH 330 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~--~~~~~l~~~~~~~~~gs~IIiTTR~~~ 330 (1278)
+ ..++.-+||+|.+.-. +++..+...+. ..|..||+|.++..
T Consensus 74 ~-~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 74 E-EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred h-hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 4 2335569999998653 33444443321 46889999999843
No 261
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.12 Score=59.16 Aligned_cols=28 Identities=29% Similarity=0.311 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..++|+++|++|+||||++..++..+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~ 267 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHG 267 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4589999999999999999999876643
No 262
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.084 Score=55.02 Aligned_cols=51 Identities=22% Similarity=0.410 Sum_probs=37.7
Q ss_pred cccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 186 ELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
.+-|.+-+..++.+.... +-+..|-|.++|++|.|||.||++|++.....|
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 455777777777665531 234567788999999999999999998665443
No 263
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.62 E-value=0.051 Score=59.16 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=34.0
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccc------cccEEee
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEF------DGSSFLA 243 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f------~~~~~~~ 243 (1278)
.|..+|..+-..-.++.|+|.+|.|||+||..++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 45555654445567999999999999999999886554443 4455654
No 264
>PRK06762 hypothetical protein; Provisional
Probab=95.62 E-value=0.054 Score=55.66 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.++|.|.|+.|+||||+|+++.+.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 265
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.61 E-value=0.055 Score=56.47 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=40.7
Q ss_pred CcccchHHHHHHHHHhhh--cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc
Q 000802 185 KELVGIESRLEKLKVHMD--TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG 238 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~--~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 238 (1278)
..++|.+...+.+.+--. ..+....-|.+||.-|.||+.|++++.+.+.++.-.
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 468999988888765332 122334457899999999999999999988776554
No 266
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.59 E-value=0.11 Score=53.10 Aligned_cols=43 Identities=28% Similarity=0.273 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 189 GIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|-+..++.|...+..+ .-...+.++|+.|+||+|+|.++++.+
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHH
Confidence 5566677777777543 234567899999999999999999765
No 267
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.58 E-value=0.07 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+|.|.|++|+||||+|+.++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998866
No 268
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.55 E-value=0.054 Score=57.41 Aligned_cols=110 Identities=15% Similarity=0.202 Sum_probs=63.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEe-eechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL-ADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
.++.|.|+.|.||||+++++...+.......++. .+-.+.... . . ..+ ...... ..+.....+.++..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~-~----~~~----i~q~~v-g~~~~~~~~~i~~a 70 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-S-K----RSL----INQREV-GLDTLSFENALKAA 70 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-C-c----cce----eeeccc-CCCccCHHHHHHHH
Confidence 4789999999999999999887765444444333 211111000 0 0 000 000000 11123345667778
Q ss_pred HcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhh
Q 000802 288 LRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLL 332 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 332 (1278)
++..+=.|++|.+.+.+.+....... ..|-.++.|+-...+.
T Consensus 71 Lr~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 71 LRQDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred hcCCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88888899999998877765544332 2455577777655443
No 269
>PRK07261 topology modulation protein; Provisional
Probab=95.52 E-value=0.037 Score=57.05 Aligned_cols=23 Identities=43% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 270
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.50 E-value=0.0098 Score=59.32 Aligned_cols=36 Identities=31% Similarity=0.220 Sum_probs=28.9
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..+|.|.|.+|.||||||+++.+++...-....++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 358899999999999999999999877765555553
No 271
>PRK07667 uridine kinase; Provisional
Probab=95.49 E-value=0.025 Score=59.67 Aligned_cols=41 Identities=24% Similarity=0.338 Sum_probs=32.0
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
+.+...+....++..+|+|.|.+|.||||+|+.+...+...
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 44555555544566899999999999999999999877543
No 272
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.47 E-value=0.031 Score=61.29 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=28.1
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.|..+|..+-..-.++.|+|.+|.|||++|.+++...
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHe
Confidence 4455555444556899999999999999999987543
No 273
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.46 E-value=0.13 Score=57.14 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=25.3
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.+.++++++|++|+||||++..++..+...
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~ 99 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ 99 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 456899999999999999999998766544
No 274
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.45 E-value=0.043 Score=61.87 Aligned_cols=48 Identities=25% Similarity=0.253 Sum_probs=34.2
Q ss_pred HHHHhhh-cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 196 KLKVHMD-TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 4455565 33355678999999999999999998765555445566664
No 275
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.43 E-value=0.25 Score=59.98 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=36.7
Q ss_pred HHHHHHcCCCceEEEeCC------CChhhhhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEecCC
Q 000802 283 MLRIRLRRKKVLVVIDDV------AHPDHLRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKLEA 345 (1278)
Q Consensus 283 ~l~~~L~~kr~LlVLDdv------~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~ 345 (1278)
.+...+-.++-++|||.= +..+.++..+..++ ..||+.|-|........ .+++.+++
T Consensus 449 ~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~~va-~~i~~~~~ 511 (530)
T COG0488 449 LLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLDRVA-TRIWLVED 511 (530)
T ss_pred HHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhhc-ceEEEEcC
Confidence 445556678999999964 34445555555442 45888888888877654 44555554
No 276
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.42 E-value=0.06 Score=62.49 Aligned_cols=49 Identities=22% Similarity=0.175 Sum_probs=35.3
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++......-...+|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555666544345579999999999999999999877665444455554
No 277
>PRK08118 topology modulation protein; Reviewed
Probab=95.42 E-value=0.012 Score=60.43 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.|.|+|++|+||||||+.+++...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 278
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.40 E-value=0.038 Score=62.28 Aligned_cols=48 Identities=25% Similarity=0.271 Sum_probs=34.0
Q ss_pred HHHHhhh-cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 196 KLKVHMD-TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 196 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 4445564 34455689999999999999999988766555444455663
No 279
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.40 E-value=0.02 Score=57.14 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986554
No 280
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.38 E-value=0.011 Score=58.61 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=30.2
Q ss_pred cchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 188 VGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 188 vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
||.-..++++.+.+..-......|.|+|..|.||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 455556666666555322344567899999999999999888743
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.38 E-value=0.1 Score=60.33 Aligned_cols=49 Identities=24% Similarity=0.247 Sum_probs=38.2
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 186 ELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.++|-+....++..+......-...+.++|+.|+||||+|.++++.+..
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 4677778888888877644434446899999999999999999987653
No 282
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.34 E-value=0.051 Score=59.47 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=33.7
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..+.++|..+-..-.++.|+|.+|+|||++|.++......+=..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3455566544456689999999999999999998654333334455554
No 283
>PRK09354 recA recombinase A; Provisional
Probab=95.31 E-value=0.048 Score=61.99 Aligned_cols=98 Identities=22% Similarity=0.268 Sum_probs=55.0
Q ss_pred HHHHHhhh-cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHH---HHHHhCCC
Q 000802 195 EKLKVHMD-TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQL---LSDLLKLA 270 (1278)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~l---l~~l~~~~ 270 (1278)
..|..+|. .+=..-+++-|+|++|+||||||.+++......-..++|+. ..+... . ...+.+ +..++-
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId-~E~s~~----~-~~a~~lGvdld~lli-- 117 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID-AEHALD----P-VYAKKLGVDIDNLLV-- 117 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC-CccchH----H-HHHHHcCCCHHHeEE--
Confidence 34555665 44455689999999999999999988765555545566664 322211 1 111111 111111
Q ss_pred CCCccchhhhHHHHHHHHc-CCCceEEEeCCC
Q 000802 271 DNSIRNVYDGINMLRIRLR-RKKVLVVIDDVA 301 (1278)
Q Consensus 271 ~~~~~~~~~~~~~l~~~L~-~kr~LlVLDdv~ 301 (1278)
..+.+.++....+...++ ++.-+||+|-|-
T Consensus 118 -~qp~~~Eq~l~i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 118 -SQPDTGEQALEIADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred -ecCCCHHHHHHHHHHHhhcCCCCEEEEeChh
Confidence 112234444555555444 356689999875
No 284
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.22 E-value=0.34 Score=55.33 Aligned_cols=85 Identities=18% Similarity=0.179 Sum_probs=47.3
Q ss_pred CceEEEeCCCChhh--hhHhhcCCCCCCCCcEEEEEeCChh-hhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCCCh
Q 000802 292 KVLVVIDDVAHPDH--LRSLVGEPDWFGPGSQIIITTRNEH-LLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFE 367 (1278)
Q Consensus 292 r~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTTR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~ 367 (1278)
+=++|+|+++..+. ...++..+.....+..+|++|.+.. +... ......+.+.+++.+++.+.+..... ..
T Consensus 114 ~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~~-----~~ 188 (325)
T PRK08699 114 LRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERGV-----AE 188 (325)
T ss_pred ceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcCC-----Cc
Confidence 33556688776542 2233222221234566777777653 3332 22345789999999999988865421 11
Q ss_pred hHHHHHHHHHHHcCCCchH
Q 000802 368 EYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 368 ~~~~~~~~i~~~~~GlPLa 386 (1278)
.. ..+..++|-|+.
T Consensus 189 ~~-----~~l~~~~g~p~~ 202 (325)
T PRK08699 189 PE-----ERLAFHSGAPLF 202 (325)
T ss_pred HH-----HHHHHhCCChhh
Confidence 11 123568898854
No 285
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.18 E-value=0.034 Score=58.20 Aligned_cols=30 Identities=40% Similarity=0.551 Sum_probs=26.8
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 456899999999999999999999988765
No 286
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.17 E-value=0.027 Score=67.08 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=43.1
Q ss_pred CCCCcccchHHHHHHHHHhhh----cCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 182 KIPKELVGIESRLEKLKVHMD----TRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.....++|+++.+++|.+.|. ......+++.++|++|+||||||+.+++.+..
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 445578999999999998883 23445689999999999999999999986543
No 287
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.14 E-value=0.33 Score=54.63 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=35.9
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 237 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1278)
.+.++=..+....+...+..+ +.|.|.|.+|.||||+|+.++..+...|-
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~----~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD----RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC----CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 344555555556666666432 45889999999999999999998865543
No 288
>PRK10867 signal recognition particle protein; Provisional
Probab=95.12 E-value=0.37 Score=56.99 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+|.++|.+|+||||.|..++..+..+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 46899999999999999998888766544
No 289
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.19 Score=58.53 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999887654
No 290
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.11 E-value=0.11 Score=52.10 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
++.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999998764
No 291
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.11 E-value=0.11 Score=63.95 Aligned_cols=46 Identities=30% Similarity=0.462 Sum_probs=36.7
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
.+.++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 64 f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999988776432 2345679999999999999999864
No 292
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=1.2 Score=46.82 Aligned_cols=143 Identities=18% Similarity=0.365 Sum_probs=83.2
Q ss_pred chHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHH
Q 000802 189 GIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVIS 257 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 257 (1278)
|.+.++++|.+.+.. +-.+.+-|.++|++|.|||-||++|++.- .+.|+. ++. . .
T Consensus 151 gLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg-------s-e 216 (404)
T KOG0728|consen 151 GLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG-------S-E 216 (404)
T ss_pred cHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech-------H-H
Confidence 567788887776642 12345668899999999999999998732 233443 322 1 1
Q ss_pred HHHHHHHHHhCCCCCCccchhhhHHHHHHHH----cCCCceEEEeCCCChh--------------h--hhHhhcCCCCC-
Q 000802 258 LQKQLLSDLLKLADNSIRNVYDGINMLRIRL----RRKKVLVVIDDVAHPD--------------H--LRSLVGEPDWF- 316 (1278)
Q Consensus 258 l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~~~~- 316 (1278)
+.+..+. ++..++++.+ ...+..|..|.++... | +-.++..++.|
T Consensus 217 lvqk~ig--------------egsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 217 LVQKYIG--------------EGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred HHHHHhh--------------hhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 2222111 1222333321 3457788888876532 1 22333333322
Q ss_pred -CCCcEEEEEeCChhh-----hhhcCccceEecCCCCHHHHHHHHHHhh
Q 000802 317 -GPGSQIIITTRNEHL-----LKLHRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 317 -~~gs~IIiTTR~~~v-----~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
...-+||..|..-++ ++-...++.++.++-+++...++++-+.
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 245577776654333 3333566778888888888888887665
No 293
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.08 E-value=0.013 Score=62.09 Aligned_cols=84 Identities=30% Similarity=0.320 Sum_probs=50.1
Q ss_pred cCCCCCccEEEecCC--CCCCCCcccccCCCCCCcEecCCCCcCcc---cchhhcCCCCCCEeeccCCcCCCcC------
Q 000802 920 LMLPSLSEKLDLSDC--CLGEGAIPTDIGNLCLLKELCLSGNNFVT---LPASINSLLNLEELKLEDCKRLQSL------ 988 (1278)
Q Consensus 920 ~~l~~lL~~L~Ls~~--~l~~~~lp~~l~~l~sL~~L~L~~n~l~~---lp~~i~~l~~L~~L~L~~c~~L~~l------ 988 (1278)
-.+|.| +.|++|+| .. .+.++.....+++|++|+|++|.+.- ++ .+..+.+|..|++.+|.-.+.-
T Consensus 62 P~Lp~L-kkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~~Ldl~n~~~~~l~dyre~v 138 (260)
T KOG2739|consen 62 PKLPKL-KKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLKSLDLFNCSVTNLDDYREKV 138 (260)
T ss_pred CCcchh-hhhcccCCcccc-cccceehhhhCCceeEEeecCCccccccccc-hhhhhcchhhhhcccCCccccccHHHHH
Confidence 344555 88888888 33 23344445556888888888887653 32 4556677777888777654411
Q ss_pred CCCCCCCcEEEecCCccc
Q 000802 989 PQLPPNVEKVRVNGCASL 1006 (1278)
Q Consensus 989 p~lp~sL~~L~i~~C~~L 1006 (1278)
-.+.++|+.|+-.++..=
T Consensus 139 f~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 139 FLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred HHHhhhhccccccccCCc
Confidence 113456666655554443
No 294
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.19 Score=61.71 Aligned_cols=152 Identities=18% Similarity=0.196 Sum_probs=84.2
Q ss_pred cccchHHHHHHHHHhhh---c--------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCC
Q 000802 186 ELVGIESRLEKLKVHMD---T--------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGS 254 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~ 254 (1278)
.+.|.+...+.+.+... . +-...+.+.++|++|.|||.||+++++.....|-....- +...+
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~----~l~sk--- 315 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS----ELLSK--- 315 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH----HHhcc---
Confidence 45566666555544432 1 124556888999999999999999998655444322111 11110
Q ss_pred HHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChhh-------------hhHhhcCCCCCCC--C
Q 000802 255 VISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDH-------------LRSLVGEPDWFGP--G 319 (1278)
Q Consensus 255 ~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~-------------~~~l~~~~~~~~~--g 319 (1278)
. +++ ......+.+....+..+..|.+|.++.... ...++........ +
T Consensus 316 -------~----vGe------sek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 316 -------W----VGE------SEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred -------c----cch------HHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 0 000 001112222333357889999999855321 2233322221222 3
Q ss_pred cEEEEEeCChhhhhh-----cCccceEecCCCCHHHHHHHHHHhhcC
Q 000802 320 SQIIITTRNEHLLKL-----HRVRKVYKLEALTYDEAFRLLCLKAFD 361 (1278)
Q Consensus 320 s~IIiTTR~~~v~~~-----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1278)
..||-||-....... ...+..+.+..-+.++..+.|..+.-.
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 334445544333221 134668899999999999999988853
No 295
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=94.99 E-value=0.061 Score=54.30 Aligned_cols=90 Identities=19% Similarity=0.161 Sum_probs=45.1
Q ss_pred EEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcC--
Q 000802 213 IWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRR-- 290 (1278)
Q Consensus 213 I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~-- 290 (1278)
|.|++|+||||+|+.++.++. |.....-.-+++............++. +.... .-..+-....+++++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~--~~~is~~~llr~~~~~~s~~g~~i~~~----l~~g~--~vp~~~v~~ll~~~l~~~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG--LVHISVGDLLREEIKSDSELGKQIQEY----LDNGE--LVPDELVIELLKERLEQPP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT--SEEEEHHHHHHHHHHTTSHHHHHHHHH----HHTTS--S--HHHHHHHHHHHHHSGG
T ss_pred CcCCCCCChHHHHHHHHHhcC--cceechHHHHHHHHhhhhHHHHHHHHH----HHhhc--cchHHHHHHHHHHHHhhhc
Confidence 689999999999999998752 222221111222222221122222222 22111 11222344556666653
Q ss_pred CCceEEEeCCCC-hhhhhHhh
Q 000802 291 KKVLVVIDDVAH-PDHLRSLV 310 (1278)
Q Consensus 291 kr~LlVLDdv~~-~~~~~~l~ 310 (1278)
...-+|||+.-. .+|.+.+.
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~ 93 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALE 93 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHH
T ss_pred ccceeeeeeccccHHHHHHHH
Confidence 356789999854 45555543
No 296
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.97 E-value=0.13 Score=54.25 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=29.3
Q ss_pred HHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 193 RLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
+.+.+...+.. +-+++.|.|.+|.||||+++.+...+...
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 44455555543 23678899999999999999988766554
No 297
>PRK14974 cell division protein FtsY; Provisional
Probab=94.96 E-value=0.36 Score=55.10 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.5
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+++++|+.|+||||++..++..+..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999998888766543
No 298
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=94.96 E-value=0.032 Score=56.66 Aligned_cols=83 Identities=23% Similarity=0.256 Sum_probs=44.5
Q ss_pred cccccccceecccCCcccccCCCCCC-CCCccEEEEcCCCCCCccC--cccccCCCceEEEccCCCCCCcCCC-----cc
Q 000802 620 IKPLNMLKVMKLSHSENLIKTPNFTE-VPNLEELDLEGCTRLRDIH--PSLLLHNKLILLNLKGCTSLTTLPG-----EI 691 (1278)
Q Consensus 620 ~~~l~~L~~L~Ls~~~~~~~~~~~~~-l~~L~~L~L~~c~~l~~l~--~~l~~l~~L~~L~L~~~~~l~~lp~-----~~ 691 (1278)
+..++.|.+|.|++|+.....|.+.. +++|..|.|.+|+. ..+- ..+..+++|++|.+-+|.. ..... ..
T Consensus 60 lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~Ltll~Npv-~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYLTLLGNPV-EHKKNYRLYVLY 137 (233)
T ss_pred CCCccccceEEecCCcceeeccchhhhccccceEEecCcch-hhhhhcchhccCCccceeeecCCch-hcccCceeEEEE
Confidence 45556666666666665444454433 45666666666432 2221 2345566666666666432 11111 11
Q ss_pred cCCCccEEEeeCC
Q 000802 692 FMKSLKTLVLSGC 704 (1278)
Q Consensus 692 ~l~~L~~L~L~~~ 704 (1278)
.+++|++||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 4788888887763
No 299
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.95 E-value=0.11 Score=57.76 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCC
Q 000802 192 SRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD 271 (1278)
Q Consensus 192 ~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~ 271 (1278)
..++.+..++.. ...++.|.|..|.||||+++++.+.+...-...+.+.+-.+..- .+ . .++ .
T Consensus 67 ~~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~-~~-~--------~q~-~--- 129 (264)
T cd01129 67 ENLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQI-PG-I--------NQV-Q--- 129 (264)
T ss_pred HHHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecC-CC-c--------eEE-E---
Confidence 344555555532 23589999999999999999988766432122233332222110 00 0 000 0
Q ss_pred CCccchhhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhc
Q 000802 272 NSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVG 311 (1278)
Q Consensus 272 ~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~ 311 (1278)
..........+.++..|+..+=.|+++++.+.+....+..
T Consensus 130 v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~ 169 (264)
T cd01129 130 VNEKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQ 169 (264)
T ss_pred eCCcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHH
Confidence 0001112345677888888999999999999887554443
No 300
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=94.95 E-value=0.05 Score=60.03 Aligned_cols=37 Identities=22% Similarity=0.141 Sum_probs=27.5
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
+.|.++|..+-....+.=|+|.+|+|||+|+..++-.
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 3566667543334568889999999999999888743
No 301
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=94.89 E-value=0.16 Score=51.59 Aligned_cols=42 Identities=17% Similarity=0.300 Sum_probs=29.2
Q ss_pred chHHHHHHHHHhhhcC-CCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 189 GIESRLEKLKVHMDTR-SNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
|.+.-++.+.+.+... ......|+++|++|+|||||..++..
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~ 124 (157)
T cd01858 82 GKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRS 124 (157)
T ss_pred cHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhc
Confidence 5566666666655321 12235678999999999999998874
No 302
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.87 E-value=0.099 Score=57.23 Aligned_cols=49 Identities=10% Similarity=0.041 Sum_probs=34.7
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..|.++|..+=..-.++.|.|.+|.|||++|.++......+-+.++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455666555456789999999999999999887654334445566664
No 303
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.86 E-value=0.12 Score=58.11 Aligned_cols=28 Identities=25% Similarity=0.235 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999998876643
No 304
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.84 E-value=0.11 Score=53.70 Aligned_cols=121 Identities=14% Similarity=0.068 Sum_probs=60.5
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHH--h--CCC-----CCC---c
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDL--L--KLA-----DNS---I 274 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l--~--~~~-----~~~---~ 274 (1278)
....|-|+|-.|-||||.|..++-+...+=-.+.++.-+... ...+ -...++.+ ..+ . +.. ... .
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~-~~~G-E~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGA-WSTG-ERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-CccC-HHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 346788999999999999988876554332223333222221 1112 11122211 000 0 000 000 0
Q ss_pred cchhhhHHHHHHHHcC-CCceEEEeCCCChh-----hhhHhhcCCCCCCCCcEEEEEeCChh
Q 000802 275 RNVYDGINMLRIRLRR-KKVLVVIDDVAHPD-----HLRSLVGEPDWFGPGSQIIITTRNEH 330 (1278)
Q Consensus 275 ~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTTR~~~ 330 (1278)
.....+.+..++.+.. +-=|+|||.+-..- +.+.+...+....++..||+|-|+..
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1122234445555554 44599999984332 12333333333356789999999753
No 305
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.15 Score=57.74 Aligned_cols=49 Identities=22% Similarity=0.193 Sum_probs=36.8
Q ss_pred HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 194 LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+.++...|..+--.-.++.|-|-+|||||||..+++.++..+- ...++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 3556666654433457899999999999999999999888766 455553
No 306
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.18 Score=58.51 Aligned_cols=148 Identities=22% Similarity=0.229 Sum_probs=78.5
Q ss_pred CCcccchHHHH---HHHHHhhhc-------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 184 PKELVGIESRL---EKLKVHMDT-------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 184 ~~~~vGr~~~~---~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
.++.-|.|+.. ++|.+.|.. ++.=++=|.++|++|.|||-||++++-.-.- .+|.. .+..++
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V----PFF~~-sGSEFd--- 374 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV----PFFYA-SGSEFD--- 374 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC----CeEec-cccchh---
Confidence 34566777655 455555542 2222456889999999999999999854321 22322 111111
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH----HcCCCceEEEeCCCChh-------------hhhHhhcCCCCC
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR----LRRKKVLVVIDDVAHPD-------------HLRSLVGEPDWF 316 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~----L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~ 316 (1278)
+++ +..+..++++. -+.-++.|.+|.++..- .+..++...+.|
T Consensus 375 -------Em~-------------VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF 434 (752)
T KOG0734|consen 375 -------EMF-------------VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF 434 (752)
T ss_pred -------hhh-------------hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc
Confidence 000 01122233332 24568999999986532 255666666655
Q ss_pred CCCcEEEE--EeCChh-hhhh----cCccceEecCCCCHHHHHHHHHHhh
Q 000802 317 GPGSQIII--TTRNEH-LLKL----HRVRKVYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 317 ~~gs~IIi--TTR~~~-v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a 359 (1278)
.+..-||| .|..++ +-.. -..+..+.|+.-+..--.++|..+.
T Consensus 435 ~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 435 KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 54433333 343332 2222 2234555666666555666666665
No 307
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.78 E-value=0.09 Score=56.75 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.3
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|.|.|++|+||||+|+.+++++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998865
No 308
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.75 E-value=0.29 Score=58.34 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=31.3
Q ss_pred chHHHHHHHHHhhhcC----CCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 189 GIESRLEKLKVHMDTR----SNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
++..-+..|.+.+... -...++++|+|++|+||||++..++..+..+
T Consensus 327 ~~~~l~~~L~~~l~v~~~~~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 327 GRGLMLGLLSKRLPVAPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred HHHHHHHHHHHhcCcCccccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3444444555544321 1235799999999999999999988765443
No 309
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.14 Score=52.93 Aligned_cols=127 Identities=16% Similarity=0.202 Sum_probs=62.8
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCC-C-------ccchh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN-S-------IRNVY 278 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-~-------~~~~~ 278 (1278)
.-.+++|.|..|.|||||.+.++.... ...+.+++.... ..... .....+. ..-+...... . ...-+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~-~~~G~i~~~g~~--~~~~~-~~~~~~~-i~~~~~~~~~~~~t~~e~lLS~G~ 101 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD-PTSGEILIDGVD--LRDLD-LESLRKN-IAYVPQDPFLFSGTIRENILSGGQ 101 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC-CCCCEEEECCEE--hhhcC-HHHHHhh-EEEEcCCchhccchHHHHhhCHHH
Confidence 345899999999999999999986443 234444443211 00000 0000000 0000000000 0 01111
Q ss_pred hhHHHHHHHHcCCCceEEEeCCCCh------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEec
Q 000802 279 DGINMLRIRLRRKKVLVVIDDVAHP------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKL 343 (1278)
Q Consensus 279 ~~~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 343 (1278)
...-.+...+..++-++++|+-..- +.+..++.... .+..||++|.+...... .++++.+
T Consensus 102 ~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l 167 (171)
T cd03228 102 RQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVL 167 (171)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEE
Confidence 1222345556678889999986321 22333333322 35678888888776643 4555544
No 310
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.70 E-value=0.26 Score=56.07 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=25.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+++++|+.|+||||++..++..++.+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46899999999999999999998876544
No 311
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.69 E-value=0.53 Score=55.33 Aligned_cols=29 Identities=24% Similarity=0.265 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
...+|.++|..|+||||+|..++..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46899999999999999999888766543
No 312
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.69 E-value=0.026 Score=55.04 Aligned_cols=22 Identities=45% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 313
>PRK04328 hypothetical protein; Provisional
Probab=94.67 E-value=0.14 Score=56.30 Aligned_cols=48 Identities=10% Similarity=0.029 Sum_probs=32.9
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.|.++|..+=..-.++.|.|.+|.|||+||.++...-..+-+.++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 455556544345678999999999999999887654333344555654
No 314
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.63 E-value=0.03 Score=59.25 Aligned_cols=26 Identities=42% Similarity=0.673 Sum_probs=23.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
||+|.|.+|+||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999887643
No 315
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.63 E-value=0.15 Score=52.74 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=19.9
Q ss_pred eeEEEEEecCCCchhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVY 229 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~ 229 (1278)
-.+++|+|+.|.|||||.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 316
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.62 E-value=0.16 Score=51.67 Aligned_cols=121 Identities=15% Similarity=0.018 Sum_probs=58.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCC-------CCc---cch
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-------NSI---RNV 277 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-------~~~---~~~ 277 (1278)
...|-|++-.|.||||.|..++-+...+=-.++++.-+... ...+ -...++.+.-.+..... ... ...
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~-~~~G-E~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA-WPNG-ERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC-cccC-hHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 35777888899999999988876544332223222211111 1112 11222221000000000 000 112
Q ss_pred hhhHHHHHHHHcCCC-ceEEEeCCCChh-----hhhHhhcCCCCCCCCcEEEEEeCChh
Q 000802 278 YDGINMLRIRLRRKK-VLVVIDDVAHPD-----HLRSLVGEPDWFGPGSQIIITTRNEH 330 (1278)
Q Consensus 278 ~~~~~~l~~~L~~kr-~LlVLDdv~~~~-----~~~~l~~~~~~~~~gs~IIiTTR~~~ 330 (1278)
.+..+..++.+...+ =|+|||.+-..- ..+.+...+....++..||+|-|+..
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence 233445555555544 499999974322 12222222223356789999999763
No 317
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.62 E-value=0.019 Score=54.54 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEecCCCchhHHHHHHHHHhhcccccc
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISHEFDGS 239 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 239 (1278)
|.|+|.+|+||||+|++++..+...|...
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 67999999999999999999888877643
No 318
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.48 Score=54.67 Aligned_cols=149 Identities=17% Similarity=0.196 Sum_probs=79.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL 288 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1278)
|=-.++|++|.|||+++.++++-+. ..++...+.+.-. -.+ ++.++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v~~----n~d-Lr~LL~~----------------------- 283 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEVKL----DSD-LRHLLLA----------------------- 283 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccccC----cHH-HHHHHHh-----------------------
Confidence 4577999999999999999998653 2333332222110 111 2222221
Q ss_pred cCCCceEEEeCCCChhh--------------------hhHhhcCCC--CCCC-CcEEEE-EeCChh-----hhhhcCccc
Q 000802 289 RRKKVLVVIDDVAHPDH--------------------LRSLVGEPD--WFGP-GSQIII-TTRNEH-----LLKLHRVRK 339 (1278)
Q Consensus 289 ~~kr~LlVLDdv~~~~~--------------------~~~l~~~~~--~~~~-gs~IIi-TTR~~~-----v~~~~~~~~ 339 (1278)
...+-.||+.|++..-+ +.-|+...+ |... +-|||| ||.... +.+--..+.
T Consensus 284 t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDm 363 (457)
T KOG0743|consen 284 TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDM 363 (457)
T ss_pred CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCccee
Confidence 13466778888764411 111222222 2222 346765 555432 223223455
Q ss_pred eEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhh
Q 000802 340 VYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLALKVLGSFL 394 (1278)
Q Consensus 340 ~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 394 (1278)
-+.+.-=+.+.-..||..+..... +. .++.+|.+...|.-+.=..++..|
T Consensus 364 hI~mgyCtf~~fK~La~nYL~~~~-~h----~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 364 HIYMGYCTFEAFKTLASNYLGIEE-DH----RLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred EEEcCCCCHHHHHHHHHHhcCCCC-Cc----chhHHHHHHhhcCccCHHHHHHHH
Confidence 667888888888999988875433 22 345555555555544433444433
No 319
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.56 E-value=0.073 Score=54.50 Aligned_cols=79 Identities=16% Similarity=0.096 Sum_probs=42.1
Q ss_pred EEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcC
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRR 290 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~ 290 (1278)
+.|.|.+|.|||++|.++... ......++... +.. -..+++.+... ....... ....+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~-~~~-----d~em~~rI~~H-~~~R~~~-w~t~E~~~~l~~~l~~ 70 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE---LGGPVTYIATA-EAF-----DDEMAERIARH-RKRRPAH-WRTIETPRDLVSALKE 70 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh---cCCCeEEEEcc-CcC-----CHHHHHHHHHH-HHhCCCC-ceEeecHHHHHHHHHh
Confidence 679999999999999998765 22344455321 111 22334443332 1112222 2223333445555532
Q ss_pred --CCceEEEeCC
Q 000802 291 --KKVLVVIDDV 300 (1278)
Q Consensus 291 --kr~LlVLDdv 300 (1278)
+.-.+++|.+
T Consensus 71 ~~~~~~VLIDcl 82 (169)
T cd00544 71 LDPGDVVLIDCL 82 (169)
T ss_pred cCCCCEEEEEcH
Confidence 3447999986
No 320
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.56 E-value=0.14 Score=52.62 Aligned_cols=124 Identities=22% Similarity=0.190 Sum_probs=61.0
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeee---chhhcccCC-CHHHHHHHHHHHHhCCCCCCccchhhhHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLAD---VREKCDKEG-SVISLQKQLLSDLLKLADNSIRNVYDGINM 283 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~---~~~~~~~~~-~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 283 (1278)
-.+++|.|..|.|||||++.++..... ..+.+++.. +.-..+... .-..+...+.. ........-+...-.
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~rv~ 101 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW-GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQRLA 101 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHHHH
Confidence 458999999999999999999864321 223233221 000011110 00011111110 011122222233334
Q ss_pred HHHHHcCCCceEEEeCCCCh------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEec
Q 000802 284 LRIRLRRKKVLVVIDDVAHP------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKL 343 (1278)
Q Consensus 284 l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 343 (1278)
+.+.+-.++=++++|+--.. ..+..+.... +..||++|.+..... ..++++.+
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~--~~d~i~~l 160 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK--FHDRVLDL 160 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh--hCCEEEEE
Confidence 55566678889999985321 1222333221 356888888776543 34445544
No 321
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.54 E-value=0.13 Score=56.88 Aligned_cols=118 Identities=16% Similarity=0.152 Sum_probs=63.8
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCC-----Cccchhhh
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADN-----SIRNVYDG 280 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~-----~~~~~~~~ 280 (1278)
.+..-++|+|+.|.|||||.+.++..++.. .+.+++.... ........++... ... ..+... ...+...
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~--v~~~d~~~ei~~~-~~~-~~q~~~~~r~~v~~~~~k- 182 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK--VGIVDERSEIAGC-VNG-VPQHDVGIRTDVLDGCPK- 182 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE--eecchhHHHHHHH-hcc-cccccccccccccccchH-
Confidence 345789999999999999999999766543 2233332100 0000001111111 000 111110 0011111
Q ss_pred HHHHHHHH-cCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCChhhh
Q 000802 281 INMLRIRL-RRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNEHLL 332 (1278)
Q Consensus 281 ~~~l~~~L-~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~ 332 (1278)
..-+...+ ...+=++++|.+...+.+..+..... .|..+|+||-+..+.
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 11223333 35788999999988777777665542 577899999976653
No 322
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.77 Score=48.36 Aligned_cols=164 Identities=18% Similarity=0.275 Sum_probs=91.8
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
..+-|.+.+++++.+.+-. +-...+-|.++|++|.|||-+|++.+.+....|- .-..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFL-----KLAg------- 238 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFL-----KLAG------- 238 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHH-----Hhcc-------
Confidence 3566888888888776531 1123556889999999999999998865543322 1000
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH----cCCCceEEEeCCCChh--------------h--hhHhhcCC
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL----RRKKVLVVIDDVAHPD--------------H--LRSLVGEP 313 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~--------------~--~~~l~~~~ 313 (1278)
.++.+.+ . .++...++..+ ...+..|.+|.++... | +-.++..+
T Consensus 239 --PQLVQMf----I----------GdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL 302 (424)
T KOG0652|consen 239 --PQLVQMF----I----------GDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL 302 (424)
T ss_pred --hHHHhhh----h----------cchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh
Confidence 0111111 1 12233333322 2467888888874321 1 22344445
Q ss_pred CCCCC--CcEEEEEeCC-----hhhhhhcCccceEecCCCCHHHHHHHHHHhhcCCC-CCChhHHHHHHHH
Q 000802 314 DWFGP--GSQIIITTRN-----EHLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTH-KPFEEYVELAESV 376 (1278)
Q Consensus 314 ~~~~~--gs~IIiTTR~-----~~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~-~~~~~~~~~~~~i 376 (1278)
..|.+ .-+||-.|.. +.+++....++.++.+--+++...+++.-+..+-. .+.-+++++++.-
T Consensus 303 DGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsT 373 (424)
T KOG0652|consen 303 DGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARST 373 (424)
T ss_pred cCCCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcc
Confidence 54444 3456666653 33344445566777777777766677766664432 3345666766543
No 323
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.50 E-value=0.77 Score=54.30 Aligned_cols=27 Identities=26% Similarity=0.277 Sum_probs=23.4
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
...++.++|.+|+||||.|..++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 367999999999999999988887654
No 324
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.45 E-value=0.062 Score=56.38 Aligned_cols=94 Identities=21% Similarity=0.205 Sum_probs=53.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHh-CCCCCCccchhhhHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLL-KLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~~~~~~~~~~~~~~~l~~ 286 (1278)
...++|.|..|.||||+++++...+... ...+.+.+..+........ . ++. ..............+.++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPHPNW-------V-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCCCCE-------E-EEEEecCCCCCCCccCHHHHHHH
Confidence 4689999999999999999998766532 2233333222211100000 0 000 0000011112234556677
Q ss_pred HHcCCCceEEEeCCCChhhhhHhh
Q 000802 287 RLRRKKVLVVIDDVAHPDHLRSLV 310 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1278)
.++..+=.++++.+.+.+.+..+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 788888899999999887766544
No 325
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=94.45 E-value=0.081 Score=50.62 Aligned_cols=62 Identities=13% Similarity=0.198 Sum_probs=54.3
Q ss_pred cEEEcccccccccchHHHHHHHHHhCCCceeecCccccCCCCChHHHHHHHHhhceeeEEecccc
Q 000802 15 DVFLSFRGEDTRKSFTNHLYAALKNKGIYVFRDDKELEKGGSISPGLLKVIEESRISVIVLSKNY 79 (1278)
Q Consensus 15 dvFis~~~~d~~~~~~~~l~~~L~~~g~~~~~d~~~~~~g~~~~~~~~~~i~~s~~~i~v~s~~y 79 (1278)
.|||.|. +|. .++..+...|+..|+.+.+-.+....|..+.+.+.+++.+++.+||+++|+=
T Consensus 1 kVFIvhg-~~~--~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 1 KVFIVHG-RDL--AAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred CEEEEeC-CCH--HHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 3899995 766 7899999999988999766666778999999999999999999999999964
No 326
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.36 E-value=0.13 Score=55.55 Aligned_cols=52 Identities=17% Similarity=0.260 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCceEEEeCC----CC--hhhhhHhhcCCCCCCCCcEEEEEeCChhhhhh
Q 000802 281 INMLRIRLRRKKVLVVIDDV----AH--PDHLRSLVGEPDWFGPGSQIIITTRNEHLLKL 334 (1278)
Q Consensus 281 ~~~l~~~L~~kr~LlVLDdv----~~--~~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~ 334 (1278)
...+.+.|.+++=|+|||.- |- ...+-.++..+. ..|..||+.|-|-.....
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~ 204 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA 204 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence 45677788899999999963 32 223444444433 338899999998765443
No 327
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.1 Score=56.56 Aligned_cols=30 Identities=33% Similarity=0.451 Sum_probs=26.1
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
.+..++|||++|.|||-+|++|+..+.-.|
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 457899999999999999999998876554
No 328
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.13 Score=56.75 Aligned_cols=47 Identities=23% Similarity=0.225 Sum_probs=35.2
Q ss_pred HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 197 LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 197 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+..+|..+-..-+++=|+|+.|.||||+|.+++-.....-...+|+.
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID 95 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID 95 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence 44455544456688999999999999999888766555555677876
No 329
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.30 E-value=0.15 Score=56.39 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..|.|.|.+|.||||+|+++...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 36889999999999999999986654
No 330
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.48 Score=51.01 Aligned_cols=47 Identities=30% Similarity=0.367 Sum_probs=36.1
Q ss_pred cccchHHHHHHHHHhhh----------cCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 186 ELVGIESRLEKLKVHMD----------TRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.+-|.+...+.|.+..- ......+-|.++|++|.||+.||++|+...
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA 190 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA 190 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc
Confidence 46788888887776542 233446789999999999999999999654
No 331
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.26 E-value=0.2 Score=51.95 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=23.8
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..+++|.|++|+||||+|++++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999987753
No 332
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.26 E-value=0.17 Score=60.64 Aligned_cols=49 Identities=18% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
.++.+.|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4566666544445679999999999999999999877654333445554
No 333
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.26 E-value=0.11 Score=59.06 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
..|..+|..+-..-+++-|+|++|+|||+|+..++-
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~ 118 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCV 118 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHH
Confidence 445566765445567899999999999999987763
No 334
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=94.25 E-value=0.094 Score=59.93 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=27.4
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
..|.++|..+-..-.+.-|+|.+|+|||+|+..++-
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav 148 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCV 148 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHH
Confidence 345556654445567888999999999999988763
No 335
>PRK14527 adenylate kinase; Provisional
Probab=94.24 E-value=0.16 Score=53.61 Aligned_cols=26 Identities=23% Similarity=0.263 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
...++.|.|++|.||||+|+.++++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998765
No 336
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.20 E-value=0.46 Score=55.30 Aligned_cols=25 Identities=24% Similarity=0.166 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
..+++++|++|+||||+|..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998644
No 337
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.20 E-value=0.0066 Score=64.17 Aligned_cols=97 Identities=23% Similarity=0.180 Sum_probs=65.0
Q ss_pred CceEEEccCCCCCCcCCCcccCCCccEEEeeCCCCCCcCCcccCccccchhhcccCcccccccc--cccCCCCccEEEee
Q 000802 672 KLILLNLKGCTSLTTLPGEIFMKSLKTLVLSGCLKLRKFPRVAGSMECLRELLLDETDIKEIPR--SIGHLSGLVQLTLK 749 (1278)
Q Consensus 672 ~L~~L~L~~~~~l~~lp~~~~l~~L~~L~L~~~~~~~~lp~~~~~l~~L~~L~L~~~~i~~lp~--~i~~l~~L~~L~L~ 749 (1278)
+.+.|+..+|. +..+.-...|+.|++|.|+-|.....- .+..+++|++|+|..|.|..+.+ .+.++++|+.|.|.
T Consensus 20 ~vkKLNcwg~~-L~DIsic~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 20 NVKKLNCWGCG-LDDISICEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HhhhhcccCCC-ccHHHHHHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 33444555542 333333336888888888876543322 35678999999999999987754 57788999999998
Q ss_pred CCCCCCCcccc-----cccCccccccc
Q 000802 750 GCQNLSSLPVT-----ISSLKRLRNLE 771 (1278)
Q Consensus 750 ~~~~l~~lp~~-----l~~l~~L~~L~ 771 (1278)
.|...+.-+.. +..||+|++|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 88877665432 44566666665
No 338
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.24 Score=50.54 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=22.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
+.|.+.|.+|+||||+|++++..+++.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 457789999999999999999866554
No 339
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.16 E-value=0.15 Score=50.97 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=54.6
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
.-.+++|.|..|.|||||++.+..... ...+.+++.......- +.+ ....+...-.+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~~~~~i~~----~~~----------------lS~G~~~rv~lar 83 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGY----FEQ----------------LSGGEKMRLALAK 83 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCC-CCceEEEECCeEEEEE----Ecc----------------CCHHHHHHHHHHH
Confidence 346899999999999999999886432 2244444432110000 000 1111112223445
Q ss_pred HHcCCCceEEEeCCCC---hh---hhhHhhcCCCCCCCCcEEEEEeCChhhhh
Q 000802 287 RLRRKKVLVVIDDVAH---PD---HLRSLVGEPDWFGPGSQIIITTRNEHLLK 333 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~---~~---~~~~l~~~~~~~~~gs~IIiTTR~~~v~~ 333 (1278)
.+..++-++++|+... .+ .+..+.... +..||++|.+...+.
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~ 131 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLD 131 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHH
Confidence 5666778999998632 12 232233222 246888887765543
No 340
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.11 E-value=0.3 Score=61.73 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=65.6
Q ss_pred CcccchHHHHHHHHHhhhcC---C---CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHH
Q 000802 185 KELVGIESRLEKLKVHMDTR---S---NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISL 258 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~---~---~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l 258 (1278)
+.++|.++.+..|.+.+... . .....+.+.|+.|+|||-||++++.-+-+..+..+-+. +++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD-mse~---------- 630 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD-MSEF---------- 630 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec-hhhh----------
Confidence 36777777777777776531 1 13456778999999999999999998866655555443 3331
Q ss_pred HHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCc-eEEEeCCCChh
Q 000802 259 QKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKV-LVVIDDVAHPD 304 (1278)
Q Consensus 259 ~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~~ 304 (1278)
+. ...+.+.. ...-..+....+.+.++++++ +|.||||+..+
T Consensus 631 ~e--vskligsp--~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh 673 (898)
T KOG1051|consen 631 QE--VSKLIGSP--PGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAH 673 (898)
T ss_pred hh--hhhccCCC--cccccchhHHHHHHHHhcCCceEEEEechhhcC
Confidence 11 22222211 111122334577888888887 55569998765
No 341
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.10 E-value=0.18 Score=60.36 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 194 LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+.++.++|..+-..-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666667554455678999999999999999999876654433455554
No 342
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.04 E-value=0.28 Score=58.32 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.++++++|++|+||||++..++....
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999988876654
No 343
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.02 E-value=0.072 Score=57.99 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=27.1
Q ss_pred CCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 204 RSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 204 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
......+++|.|+.|.|||||++.+...+...
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 34567899999999999999999999877654
No 344
>PRK03839 putative kinase; Provisional
Probab=94.01 E-value=0.042 Score=57.35 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.|.|.|++|+||||+|+.+++++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998874
No 345
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=93.99 E-value=0.3 Score=48.56 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=31.0
Q ss_pred HHHHHHHHhhceeeEEeccccccchhhHHHHHHHHHhhhcCCc-eEeEEEEee
Q 000802 59 PGLLKVIEESRISVIVLSKNYASSTWCLDELVKIVECKNRENQ-ILPIFYDVE 110 (1278)
Q Consensus 59 ~~~~~~i~~s~~~i~v~s~~y~~s~~c~~El~~~~~~~~~~~~-v~pv~~~v~ 110 (1278)
.++.++|++++.+|+|++.....+.+. .++.+.+.... .+. ++-|+-+.|
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~-~~l~~~l~~~~-~~k~~iivlNK~D 53 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRP-PDLERYVKEVD-PRKKNILLLNKAD 53 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCC-HHHHHHHHhcc-CCCcEEEEEechh
Confidence 467899999999999998765444442 25555554331 223 555554444
No 346
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.99 E-value=0.045 Score=46.72 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+++|.|..|+||||+|+++.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
No 347
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.96 E-value=0.082 Score=51.30 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 193 RLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 193 ~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+.+++-+.|...-....+|.+.|.-|.||||+++.++..+.
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444444443223445899999999999999999998653
No 348
>PTZ00301 uridine kinase; Provisional
Probab=93.96 E-value=0.048 Score=57.99 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.8
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
..+|||.|.+|.||||||+.+.+++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 46899999999999999999988775443
No 349
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.95 E-value=0.22 Score=55.17 Aligned_cols=56 Identities=29% Similarity=0.213 Sum_probs=43.7
Q ss_pred CCCcccchHHHHHH---HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccc
Q 000802 183 IPKELVGIESRLEK---LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDG 238 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~ 238 (1278)
..+.+||..+..+. +.++...+.-.-+.|.|+|++|.|||+||..+.+.+...-+.
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 46789998776654 556665555566889999999999999999999988765443
No 350
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.95 E-value=0.18 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.|.|.|++|+||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998765
No 351
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.95 E-value=0.23 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
-.+++|.|..|.|||||++.++-..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 4589999999999999999998643
No 352
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.95 E-value=0.11 Score=57.56 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.4
Q ss_pred EEEEecCCCchhHHHHHHHHHhhc
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
|.+.|++|+||||+|+++...+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999987654
No 353
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.94 E-value=0.05 Score=58.34 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
....+|+|.|.+|+||||||+.++..+
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 354
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.93 E-value=0.41 Score=54.73 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
..++++++|+.|+||||++..++.....+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999988765433
No 355
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.93 E-value=0.89 Score=51.71 Aligned_cols=48 Identities=21% Similarity=0.088 Sum_probs=33.0
Q ss_pred eEecCCCCHHHHHHHHHHhhcCCCCCC-hhHHHHHHHHHHHcCCCchHH
Q 000802 340 VYKLEALTYDEAFRLLCLKAFDTHKPF-EEYVELAESVVKYASGLPLAL 387 (1278)
Q Consensus 340 ~~~l~~L~~~ea~~Lf~~~af~~~~~~-~~~~~~~~~i~~~~~GlPLal 387 (1278)
+++|++++.+|+..++..++-..--.. ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 679999999999999988764332221 222345566666679998654
No 356
>PRK08356 hypothetical protein; Provisional
Probab=93.91 E-value=0.36 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=19.2
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVY 229 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1278)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 357
>PRK08233 hypothetical protein; Provisional
Probab=93.91 E-value=0.045 Score=57.22 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
..+|+|.|.+|+||||+|+.++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 47899999999999999999997664
No 358
>PRK00625 shikimate kinase; Provisional
Probab=93.85 E-value=0.047 Score=56.19 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.|.++||+|+||||+|+.+.+++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999998764
No 359
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.85 E-value=0.21 Score=53.58 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=19.7
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998755
No 360
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.84 E-value=0.024 Score=36.00 Aligned_cols=21 Identities=43% Similarity=0.646 Sum_probs=12.7
Q ss_pred CCcEecCCCCcCcccchhhcC
Q 000802 950 LLKELCLSGNNFVTLPASINS 970 (1278)
Q Consensus 950 sL~~L~L~~n~l~~lp~~i~~ 970 (1278)
+|++|+|++|+|+.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655443
No 361
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=93.82 E-value=0.15 Score=58.61 Aligned_cols=46 Identities=17% Similarity=0.165 Sum_probs=36.3
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
+.++|....+.++.+.+..-...-.-|.|+|..|+||+++|+.++.
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4688998888888777764333345678999999999999999885
No 362
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.78 E-value=0.29 Score=54.53 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=27.0
Q ss_pred CceEEEeCCCChh--hhhHhhcCCCCCCCCcEEEEEeCChhh
Q 000802 292 KVLVVIDDVAHPD--HLRSLVGEPDWFGPGSQIIITTRNEHL 331 (1278)
Q Consensus 292 r~LlVLDdv~~~~--~~~~l~~~~~~~~~gs~IIiTTR~~~v 331 (1278)
+.+||+|...+.. ++..+... .|+||+|+.|--..++
T Consensus 352 ~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~aQi 390 (436)
T COG1875 352 DSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPAQI 390 (436)
T ss_pred cceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHHHc
Confidence 5699999998764 46665554 4899999998765443
No 363
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.76 E-value=0.13 Score=59.61 Aligned_cols=108 Identities=19% Similarity=0.240 Sum_probs=62.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEe-eechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL-ADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~-~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
...+.|.|+.|.||||+.+++...+.......++. .+-.+...... . .+....... .......+.++.
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~------~----~~i~q~evg-~~~~~~~~~l~~ 190 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNK------R----SLINQREVG-LDTLSFANALRA 190 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCc------c----ceEEccccC-CCCcCHHHHHHH
Confidence 36899999999999999999988776554444443 21111100000 0 000001111 112234566788
Q ss_pred HHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCCh
Q 000802 287 RLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNE 329 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 329 (1278)
.|+..+=.|++|.+.+.+.+....... ..|-.++.|+-..
T Consensus 191 ~lr~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~ 230 (343)
T TIGR01420 191 ALREDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN 230 (343)
T ss_pred hhccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence 889999999999999887766533321 2344455555443
No 364
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.76 E-value=0.37 Score=59.78 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=39.3
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
....++|....+.++.+.+..-...-..|.|+|..|+|||++|+.+++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 34579999999988888776433334567899999999999999998753
No 365
>PRK14528 adenylate kinase; Provisional
Probab=93.76 E-value=0.24 Score=51.87 Aligned_cols=24 Identities=29% Similarity=0.423 Sum_probs=21.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+.+.|.|++|+||||+|+.+...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 366
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.29 Score=52.40 Aligned_cols=53 Identities=26% Similarity=0.412 Sum_probs=40.6
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhcccc
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFD 237 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~ 237 (1278)
.++=|.+.++++|.+.... +-...+=|.++|.+|.|||-||++|++..+..|-
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 3566899999998876642 1234556779999999999999999998776554
No 367
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.74 E-value=0.075 Score=62.65 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=38.8
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
...++||++.++.+...+..+. -|.|.|++|+|||++|+.+......
T Consensus 19 ~~~i~gre~vI~lll~aalag~----hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 19 EKGLYERSHAIRLCLLAALSGE----SVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred hhhccCcHHHHHHHHHHHccCC----CEEEECCCChhHHHHHHHHHHHhcc
Confidence 3469999999999888776543 4789999999999999999986643
No 368
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=93.70 E-value=0.0096 Score=56.39 Aligned_cols=77 Identities=13% Similarity=0.212 Sum_probs=53.0
Q ss_pred CceEEEecCCCCCCCCccc--ccccchhhccccccccccccccccccccceecccCCcccccCCCCCCCCCccEEEEcC
Q 000802 580 KLRLLDWHGYPLKSLPLNL--QLDKAVEFSMCYSCIEELWTGIKPLNMLKVMKLSHSENLIKTPNFTEVPNLEELDLEG 656 (1278)
Q Consensus 580 ~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~l~~s~i~~l~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~l~~L~~L~L~~ 656 (1278)
+|...++++|.++++|..| ....+..|++.+|.|..+|..+..++.||.|+++.|.....+..+..+.+|-.|+..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~ 132 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPE 132 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCC
Confidence 4666788888888888877 4457788888888888888877777777777777766444444444455555554444
No 369
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.69 E-value=0.16 Score=61.39 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.9
Q ss_pred CCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 205 SNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 205 ~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
...-++..++|++|+||||||..+++.-
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc
Confidence 3457899999999999999999988743
No 370
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.66 E-value=0.56 Score=63.30 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.4
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
..+=|.++|++|.|||.||++++...
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc
Confidence 45668899999999999999999754
No 371
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.65 E-value=0.049 Score=61.07 Aligned_cols=126 Identities=19% Similarity=0.186 Sum_probs=69.9
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHH
Q 000802 186 ELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSD 265 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~ 265 (1278)
.++-.....+++.++|...-...+.|.|.|..|.||||+++++...+...-...+-+.+..|..-...
T Consensus 105 ~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~------------ 172 (270)
T PF00437_consen 105 DLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP------------ 172 (270)
T ss_dssp CCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS------------
T ss_pred hccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc------------
Confidence 34434444455666665432345789999999999999999999877555122233333222211000
Q ss_pred HhCCCCCCc-cchhhhHHHHHHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEE-EEEeCCh
Q 000802 266 LLKLADNSI-RNVYDGINMLRIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQI-IITTRNE 329 (1278)
Q Consensus 266 l~~~~~~~~-~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~I-IiTTR~~ 329 (1278)
....... .......+.++..|+..+=.||++.+.+.+.+..+... ..|..+ +-|....
T Consensus 173 --~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~~~a~----~tGh~~~~tT~Ha~ 232 (270)
T PF00437_consen 173 --NQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEAIQAA----NTGHLGSLTTLHAN 232 (270)
T ss_dssp --SEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHHHHHH----HTT-EEEEEEEE-S
T ss_pred --ceEEEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHHHHhh----ccCCceeeeeeecC
Confidence 0000000 13344566788889999999999999988887764433 356666 4444433
No 372
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.63 E-value=0.18 Score=52.15 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.|.|.|.+|.||||+|+.+.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999999874
No 373
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.63 E-value=0.068 Score=57.19 Aligned_cols=28 Identities=43% Similarity=0.622 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
....+|+|.|++|+||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999997654
No 374
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.60 E-value=0.89 Score=53.50 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhh-----cCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 191 ESRLEKLKVHMD-----TRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 191 ~~~~~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
..-++++..||. ...-+-+++.|.|++|.||||.++.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345677888887 334456799999999999999999988654
No 375
>PRK04040 adenylate kinase; Provisional
Probab=93.59 E-value=0.066 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=23.0
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+|+|+|++|+||||+++.+.+++.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998874
No 376
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.58 E-value=0.54 Score=48.26 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
++.|.|.+|.||||+|..+..+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 58899999999999999998764
No 377
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=93.54 E-value=0.29 Score=49.61 Aligned_cols=57 Identities=12% Similarity=0.144 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHcCCCceEEEeC----CCChhhhhH--hhcCCCCCCCCcEEEEEeCChhhhhhcC
Q 000802 278 YDGINMLRIRLRRKKVLVVIDD----VAHPDHLRS--LVGEPDWFGPGSQIIITTRNEHLLKLHR 336 (1278)
Q Consensus 278 ~~~~~~l~~~L~~kr~LlVLDd----v~~~~~~~~--l~~~~~~~~~gs~IIiTTR~~~v~~~~~ 336 (1278)
++....|.+.+-+++-+++-|. ++....|+- +...+ +..|..||++|-+.++...+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei--nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI--NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH--hhcCcEEEEEeccHHHHHhcc
Confidence 3334456666778898999885 443333443 22222 256899999999998877654
No 378
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.54 E-value=0.045 Score=51.50 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.1
Q ss_pred EEEEecCCCchhHHHHHHHHHhhcc
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
|-|+|.+|+|||++|+.++..+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999988766543
No 379
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.50 E-value=0.47 Score=54.84 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=24.9
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
..++++++|+.|+||||++.+++.+...++
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~ 165 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRF 165 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 357999999999999999999998754443
No 380
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=93.50 E-value=0.19 Score=57.62 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=27.8
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.+..+|..+-....++-|+|++|+|||++|.+++...
T Consensus 90 ~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~ 126 (317)
T PRK04301 90 ELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNV 126 (317)
T ss_pred HHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHh
Confidence 4445554443456789999999999999999887543
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.50 E-value=0.23 Score=51.37 Aligned_cols=127 Identities=18% Similarity=0.189 Sum_probs=61.9
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCC--------ccchhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNS--------IRNVYD 279 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~--------~~~~~~ 279 (1278)
-.+++|.|..|.|||||++.++.... ...+.+.+.... ..... .....+.+ .-+......- ...-+.
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~--~~~~~-~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLLR-PTSGRVRLDGAD--ISQWD-PNELGDHV-GYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccC-CCCCeEEECCEE--cccCC-HHHHHhhe-EEECCCCccccCcHHHHCcCHHHH
Confidence 35899999999999999999986432 233444443210 00000 11111000 0000000000 111111
Q ss_pred hHHHHHHHHcCCCceEEEeCCCCh------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEec
Q 000802 280 GINMLRIRLRRKKVLVVIDDVAHP------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKL 343 (1278)
Q Consensus 280 ~~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 343 (1278)
..-.+...+-.++-++++|+.... ..+..++.... ..|..||++|.+...... .++++.+
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~--~d~v~~l 168 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLAS--ADRILVL 168 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 223344556677789999986322 12223332221 236778888888776642 4555544
No 382
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.50 E-value=0.062 Score=55.67 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
...|.|+|++|+||||+|++++.++.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998773
No 383
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.49 E-value=0.32 Score=54.87 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=43.2
Q ss_pred CCcccchHHHHHHHHHhhhc----CCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 184 PKELVGIESRLEKLKVHMDT----RSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.+.|+|+++.++++.+.+.. .+..-+++.+.|+.|.||||||+.+-+-+...
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 34799999999999998864 23457899999999999999999988766443
No 384
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.48 E-value=0.049 Score=57.88 Aligned_cols=83 Identities=25% Similarity=0.307 Sum_probs=36.2
Q ss_pred CCCCCEEeecCC--CCCCcccccccCCCCCCEEEecCCCCch-hhhhhhcCCCCCceeecCCCcccCCCc----cccccC
Q 000802 811 LTGLELLTLKGC--KNLTRLSSSINGLKSLKTLNLSGCSKLE-NVLETLGQVESSEQLDKSGTTIKRPSP----NIFLMK 883 (1278)
Q Consensus 811 l~~L~~L~L~~~--~~l~~l~~~~~~l~sL~~L~l~~c~~l~-~~~~~l~~l~~L~~L~L~~n~i~~~~~----~~~~l~ 883 (1278)
+++|+.|.++.| .....++.....+|+|++|++++|.... .....+..+++|..|++.+|..+..-. .+..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~ 143 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP 143 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence 344444444444 2222333333334555555555544321 111223444555556665555444221 233455
Q ss_pred CCceeecCCC
Q 000802 884 NFKALSFCGC 893 (1278)
Q Consensus 884 ~L~~L~l~~c 893 (1278)
+|++|+-..+
T Consensus 144 ~L~~LD~~dv 153 (260)
T KOG2739|consen 144 SLKYLDGCDV 153 (260)
T ss_pred hhcccccccc
Confidence 6666654443
No 385
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.48 E-value=0.2 Score=61.08 Aligned_cols=50 Identities=18% Similarity=0.115 Sum_probs=38.1
Q ss_pred HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 194 LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+.++.++|..+-..-.++.|.|++|+||||||.+++.....+-+.++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45677777665556689999999999999999998876655545566654
No 386
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=93.46 E-value=0.27 Score=55.41 Aligned_cols=59 Identities=29% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCCcccchHHHHHH---HHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEE
Q 000802 183 IPKELVGIESRLEK---LKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF 241 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1278)
....+||.....+. +.++...+.-.-+.+.+.|++|.|||+||.++++.+..+.+....
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i 83 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI 83 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence 35689998877665 344554444356889999999999999999999999877665443
No 387
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.44 E-value=0.5 Score=57.33 Aligned_cols=155 Identities=19% Similarity=0.219 Sum_probs=86.0
Q ss_pred CCCcccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccC
Q 000802 183 IPKELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKE 252 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~ 252 (1278)
...+.-|.++..+++.+.+.. +..=++=|.++|++|.|||.||++++....-.|-... -++.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iS----GS~F---- 219 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS----GSDF---- 219 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceecc----chhh----
Confidence 345678988888777766642 1122456889999999999999999865433322110 0000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh----------------hhhHhhcCCCCC
Q 000802 253 GSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD----------------HLRSLVGEPDWF 316 (1278)
Q Consensus 253 ~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----------------~~~~l~~~~~~~ 316 (1278)
.....+.. .....+...+..++-++.|++|.++... .+..++...+.+
T Consensus 220 ----------VemfVGvG------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF 283 (596)
T COG0465 220 ----------VEMFVGVG------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 283 (596)
T ss_pred ----------hhhhcCCC------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccC
Confidence 00000100 0011223334445668999999875432 245555555555
Q ss_pred CCCcEEEE--EeCChhhh-----hhcCccceEecCCCCHHHHHHHHHHhhcC
Q 000802 317 GPGSQIII--TTRNEHLL-----KLHRVRKVYKLEALTYDEAFRLLCLKAFD 361 (1278)
Q Consensus 317 ~~gs~IIi--TTR~~~v~-----~~~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1278)
+...-||| .|-...|+ +-...++.+.++..+.....+.++-|+-.
T Consensus 284 ~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 284 GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence 53332333 33333332 23345667778877778888888766643
No 388
>PTZ00035 Rad51 protein; Provisional
Probab=93.42 E-value=0.25 Score=56.84 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=28.9
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
..+.++|..+-..-.++.|+|.+|.|||||+..++-.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 4566667655456789999999999999999888743
No 389
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.42 E-value=0.47 Score=61.88 Aligned_cols=224 Identities=14% Similarity=0.139 Sum_probs=108.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc-c---cccEEeeechhhcccCCCHHH-HHHHHHHHHhCCCCCCccchhhhHHHH
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE-F---DGSSFLADVREKCDKEGSVIS-LQKQLLSDLLKLADNSIRNVYDGINML 284 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~-f---~~~~~~~~~~~~~~~~~~~~~-l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1278)
-+.|+|.+|.||||+...++-....+ + +..+|+. +...........+ .+...+...+.... .........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~-l~~~~~~~~~~~q~~~~~~l~~~~~~~~----~~~~~~~~~ 298 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLL-LNAFALARKFEKQLSLIDYLAEELFSQG----IAKQLIEAH 298 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeee-chhHHHhhhhHhhccHHHHHHHHHhccC----CcchhhHHH
Confidence 67899999999999998887533222 1 2233332 1110000000111 11112222111111 111222223
Q ss_pred HHHHcCCCceEEEeCCCChhh---------hhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEecCCCCHHHHHHHH
Q 000802 285 RIRLRRKKVLVVIDDVAHPDH---------LRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKLEALTYDEAFRLL 355 (1278)
Q Consensus 285 ~~~L~~kr~LlVLDdv~~~~~---------~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf 355 (1278)
.+.++..++|+.+|.++.... +..+.+. -+.+++|+|.|....-.....-...++..+.++.-.+..
T Consensus 299 ~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 299 QELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 578889999999999987642 3333333 358999999997654443333334455555554433222
Q ss_pred H--------HhhcCCCCCC-hhH-HHH---HHHHHHHcCCCchHHHHHHhhhc------CCCHHHHHHHHHHHhcCCChh
Q 000802 356 C--------LKAFDTHKPF-EEY-VEL---AESVVKYASGLPLALKVLGSFLF------GRAVHEWTSALERIKRDPEYE 416 (1278)
Q Consensus 356 ~--------~~af~~~~~~-~~~-~~~---~~~i~~~~~GlPLal~~lg~~L~------~~~~~~w~~~l~~l~~~~~~~ 416 (1278)
. ...++..... ..+ ..+ ..+-++.....|++|...+..-. ....+-++.+++.+-...+..
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~~~d~~ 454 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLGREDET 454 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHhccchh
Confidence 2 1222222211 011 111 22333444778988888774332 234666777777665433322
Q ss_pred HHHHHHhcccCCcH-HHHH-HHHHhhcc
Q 000802 417 ILSILQISFDGLKE-VEKK-IFLDVVCF 442 (1278)
Q Consensus 417 i~~~l~~sy~~L~~-~~k~-~fl~la~f 442 (1278)
-.......|+.+.. ...+ .+..+|.+
T Consensus 455 ~~~~~~~~~~~~~~~~~~~~l~~~la~~ 482 (824)
T COG5635 455 RGIKWSKTYAKLTTDQQDKWLLQLLAAL 482 (824)
T ss_pred hhhcchhhhcccchHHHHHHHHHHHHHH
Confidence 22223334444433 3333 45444443
No 390
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.37 E-value=0.12 Score=51.63 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.8
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhcccccc
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGS 239 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~ 239 (1278)
....+|-+.|.+|.||||||.+++.++.......
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~ 54 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHV 54 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeE
Confidence 3457899999999999999999999886654433
No 391
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.36 E-value=1.6 Score=46.99 Aligned_cols=208 Identities=15% Similarity=0.191 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc------cccccEEeeechh------hcc---
Q 000802 186 ELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH------EFDGSSFLADVRE------KCD--- 250 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~------~f~~~~~~~~~~~------~~~--- 250 (1278)
.+.++++....+.++.. .++..-..++|+.|.||-|.+..+.+.+-+ +-+...|...... .+.
T Consensus 14 ~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yH 91 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYH 91 (351)
T ss_pred hcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccce
Confidence 46677777777776654 356778889999999999999888765422 1222233321111 000
Q ss_pred ------cCCC-HHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCc-eEEEeCCCCh--hhhhHhhcCCCCCCCCc
Q 000802 251 ------KEGS-VISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKV-LVVIDDVAHP--DHLRSLVGEPDWFGPGS 320 (1278)
Q Consensus 251 ------~~~~-~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVLDdv~~~--~~~~~l~~~~~~~~~gs 320 (1278)
..|. -..+.+.++.+.......+ .-..+.| ++|+-.+++. +.-.++..........+
T Consensus 92 lEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 92 LEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred EEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 0000 1112222222211100000 0012344 4555555543 22222222222224567
Q ss_pred EEEEEeCCh--hhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCch-HHHHHHhhhc--
Q 000802 321 QIIITTRNE--HLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPL-ALKVLGSFLF-- 395 (1278)
Q Consensus 321 ~IIiTTR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPL-al~~lg~~L~-- 395 (1278)
|+|+..... -+...-...-.+.+...+++|....+++-+-+..-..+ .+++.+|+++++|+-- |+-.+-..-.
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 777643321 11111112235789999999999999887755444333 5899999999999753 3333221111
Q ss_pred ----C----CCHHHHHHHHHHHh
Q 000802 396 ----G----RAVHEWTSALERIK 410 (1278)
Q Consensus 396 ----~----~~~~~w~~~l~~l~ 410 (1278)
+ -...+|+-.+.+..
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~a 259 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEIA 259 (351)
T ss_pred ccccccCCCCCCccHHHHHHHHH
Confidence 1 13568998887654
No 392
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.32 E-value=0.29 Score=51.59 Aligned_cols=48 Identities=25% Similarity=0.365 Sum_probs=35.7
Q ss_pred cccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 186 ELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+-|=.++++++.+.... +-+..+-|.++|++|.|||-+|++|+++..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 455677788877765431 223456688999999999999999998754
No 393
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.30 E-value=0.17 Score=59.73 Aligned_cols=93 Identities=24% Similarity=0.234 Sum_probs=52.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCC-------CCCccc----
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-------DNSIRN---- 276 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-------~~~~~~---- 276 (1278)
-+-++|.|.+|+|||||+..+......+....+.+.-+.+.... +..+.+.++..-.... .....-
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rE---v~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35689999999999999999887665554444444455553222 4444444433210000 000000
Q ss_pred hhhhHHHHHHHH---cCCCceEEEeCCCCh
Q 000802 277 VYDGINMLRIRL---RRKKVLVVIDDVAHP 303 (1278)
Q Consensus 277 ~~~~~~~l~~~L---~~kr~LlVLDdv~~~ 303 (1278)
.....-.+.+++ +++++|+++||+-.-
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 011122345555 579999999998543
No 394
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.29 E-value=0.29 Score=49.23 Aligned_cols=23 Identities=26% Similarity=0.583 Sum_probs=20.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 36799999999999999998763
No 395
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=93.29 E-value=1.7 Score=49.18 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
-..|+|+|+.|+||+||.+.+.-
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~G 635 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIG 635 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhc
Confidence 35689999999999999998874
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.27 E-value=0.46 Score=49.16 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
++.+.|++|.||||+++.++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999999877554
No 397
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.26 E-value=0.12 Score=59.83 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=39.4
Q ss_pred CCcccchHHHHHHHHHhhhcC------------CCCeeEEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 184 PKELVGIESRLEKLKVHMDTR------------SNDVRMIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
..++||.++.++.+...+... ....+-|.++|++|+|||++|++++..+...|
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 346899998888876555421 11246788999999999999999998775443
No 398
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=93.26 E-value=0.21 Score=53.57 Aligned_cols=41 Identities=24% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.++.+.+.....+..+|||.|++|+||+||..++...+..+
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~ 56 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRER 56 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhc
Confidence 34444444444567899999999999999999988766543
No 399
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=93.26 E-value=0.36 Score=50.34 Aligned_cols=122 Identities=18% Similarity=0.224 Sum_probs=60.5
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeec--hhhcc-c-CCCHHHHHHHHHHHHh-----CCCCCCccch
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV--REKCD-K-EGSVISLQKQLLSDLL-----KLADNSIRNV 277 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~-~-~~~~~~l~~~ll~~l~-----~~~~~~~~~~ 277 (1278)
.-.+++|.|..|.|||||++.++-... ...+.+++... ..... . ...+.. ..+++..+. .........-
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~~~~~~~~~~~~i~~-~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDLASLSPKELARKIAY-VPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEECCcCCHHHHHHHHhH-HHHHHHHcCCHhHhcCCcccCCHH
Confidence 345899999999999999999986442 33455554321 11000 0 000111 111222211 1111111112
Q ss_pred hhhHHHHHHHHcCCCceEEEeCCCC---hh---hhhHhhcCCCCCCC-CcEEEEEeCChhhh
Q 000802 278 YDGINMLRIRLRRKKVLVVIDDVAH---PD---HLRSLVGEPDWFGP-GSQIIITTRNEHLL 332 (1278)
Q Consensus 278 ~~~~~~l~~~L~~kr~LlVLDdv~~---~~---~~~~l~~~~~~~~~-gs~IIiTTR~~~v~ 332 (1278)
+...-.+.+.+-..+-++++|+.-. .+ .+..+..... .. +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~--~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLA--RERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HhcCCEEEEEeCCHHHH
Confidence 2223345556667888999998632 12 2222222221 22 67888888876654
No 400
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.26 E-value=0.069 Score=53.00 Aligned_cols=22 Identities=45% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|.++|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999887
No 401
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.24 E-value=0.53 Score=49.70 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=20.0
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
|.|.|++|+||||+|+.++.++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998764
No 402
>PRK06547 hypothetical protein; Provisional
Probab=93.24 E-value=0.086 Score=54.23 Aligned_cols=27 Identities=33% Similarity=0.288 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
....+|+|.|++|.||||+|+.+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998764
No 403
>PRK14531 adenylate kinase; Provisional
Probab=93.23 E-value=0.41 Score=49.99 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=20.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.|.|.|++|.||||+|+.++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998875
No 404
>PRK14529 adenylate kinase; Provisional
Probab=93.21 E-value=0.41 Score=51.24 Aligned_cols=91 Identities=20% Similarity=0.122 Sum_probs=47.3
Q ss_pred EEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcC
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRR 290 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~ 290 (1278)
|.|.|++|+||||+|+.++.++.-.+ ..--.-+++.......+....++++.+ . ..-..+.....+.+++.+
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~~i~~~t~lg~~i~~~i~~----G--~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFREHIGGGTELGKKAKEYIDR----G--DLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhhhccCCChHHHHHHHHHhc----c--CcchHHHHHHHHHHHHhc
Confidence 67899999999999999988764221 110111222221112133333333322 1 111222334556666643
Q ss_pred C-CceEEEeCCCC-hhhhhHh
Q 000802 291 K-KVLVVIDDVAH-PDHLRSL 309 (1278)
Q Consensus 291 k-r~LlVLDdv~~-~~~~~~l 309 (1278)
. .-=+|||+.-. .+|.+.|
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 2 44599999853 4554443
No 405
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.20 E-value=0.29 Score=52.93 Aligned_cols=125 Identities=16% Similarity=0.191 Sum_probs=66.1
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeec--hhhcccCCCHHHHHHHHHHHHhCCC------CCCccchh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV--REKCDKEGSVISLQKQLLSDLLKLA------DNSIRNVY 278 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~------~~~~~~~~ 278 (1278)
...++||+|..|.||||+|+.+..-..-. .+.+++..- ... .+.. ......+++..+.-.. ..+....+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~-~~~~-~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKL-SKEE-RRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhc-chhH-HHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999998755432 233333211 110 0111 2223334444432111 11122222
Q ss_pred hhHHHHHHHHcCCCceEEEeCCCCh------hhhhHhhcCCCCCCCCcEEEEEeCChhhhhhc
Q 000802 279 DGINMLRIRLRRKKVLVVIDDVAHP------DHLRSLVGEPDWFGPGSQIIITTRNEHLLKLH 335 (1278)
Q Consensus 279 ~~~~~l~~~L~~kr~LlVLDdv~~~------~~~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~ 335 (1278)
...-.+.+.|.-++-++|.|..-.. .|.-.++..+. ...|-..+..|-|-.+++..
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhh
Confidence 2334567778889999999985332 22222322221 12355667777776666553
No 406
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=93.16 E-value=0.44 Score=49.87 Aligned_cols=27 Identities=26% Similarity=0.366 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
...++.|.|.+|.||||+|+.+...+.
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999998764
No 407
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.15 E-value=0.67 Score=50.82 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+..|+|++|+|||+||..++-.+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999886553
No 408
>PRK13947 shikimate kinase; Provisional
Probab=93.12 E-value=0.07 Score=55.13 Aligned_cols=26 Identities=35% Similarity=0.403 Sum_probs=22.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
-|.|+|++|+||||+|+.+++++.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999887543
No 409
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.12 E-value=0.56 Score=52.55 Aligned_cols=37 Identities=19% Similarity=0.047 Sum_probs=27.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEee
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLA 243 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~ 243 (1278)
...++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 34588899999999999999988765444 33445553
No 410
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.10 E-value=0.19 Score=51.34 Aligned_cols=117 Identities=13% Similarity=0.159 Sum_probs=58.4
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIR 287 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~ 287 (1278)
-.+++|.|..|.|||||.+.++-... ...+.+++.... ..... .....++ .+.-. ......+...-.+.+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~--~~~~~-~~~~~~~---~i~~~--~qLS~G~~qrl~lara 96 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKE--VSFAS-PRDARRA---GIAMV--YQLSVGERQMVEIARA 96 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEE--CCcCC-HHHHHhc---CeEEE--EecCHHHHHHHHHHHH
Confidence 35899999999999999999986442 234455543211 00000 1010000 00000 0011122223345555
Q ss_pred HcCCCceEEEeCCCCh---hhhhHhhcCCCC-CCCCcEEEEEeCChhhhh
Q 000802 288 LRRKKVLVVIDDVAHP---DHLRSLVGEPDW-FGPGSQIIITTRNEHLLK 333 (1278)
Q Consensus 288 L~~kr~LlVLDdv~~~---~~~~~l~~~~~~-~~~gs~IIiTTR~~~v~~ 333 (1278)
+-.++-++++|+.-.. +..+.+...+.. ...|..||++|.+...+.
T Consensus 97 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 97 LARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred HhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6677889999986322 112222211111 124677888888876443
No 411
>PRK14526 adenylate kinase; Provisional
Probab=93.10 E-value=0.41 Score=51.09 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.6
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+.|.|++|+||||+|+.++..+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~ 24 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNEL 24 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999988655
No 412
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=93.08 E-value=0.35 Score=51.48 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEEEEecCCCchhHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVY 229 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~ 229 (1278)
.+++|+|+.|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 389999999999999999985
No 413
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.04 E-value=0.37 Score=54.47 Aligned_cols=89 Identities=25% Similarity=0.309 Sum_probs=54.8
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccc--cccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEF--DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f--~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
+.+.|.|..|.||||+++++.+.+.... ...+-+.+..|..-....... +.. .. ......+.++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~---------~~~-~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQ---------LRT-SD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEE---------EEe-cC---CCCCHHHHHHH
Confidence 4577999999999999999998876532 223334443332111000000 000 00 11145567888
Q ss_pred HHcCCCceEEEeCCCChhhhhHhh
Q 000802 287 RLRRKKVLVVIDDVAHPDHLRSLV 310 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1278)
.|+..+=-||+..+...+.++.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~~l~ 223 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALDLLK 223 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHHHHH
Confidence 899999999999999888766543
No 414
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=93.02 E-value=0.079 Score=55.72 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=23.1
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+..+|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998765
No 415
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.99 E-value=0.19 Score=53.25 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.3
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEe
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFL 242 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~ 242 (1278)
....+++|+|++|.||||||+.+...+...-...+++
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 4567999999999999999999998775432334444
No 416
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.96 E-value=0.22 Score=52.31 Aligned_cols=33 Identities=21% Similarity=0.079 Sum_probs=24.4
Q ss_pred EEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
+.|.|.+|+|||+||.++.......=..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999988765443334455553
No 417
>COG4240 Predicted kinase [General function prediction only]
Probab=92.84 E-value=0.31 Score=50.50 Aligned_cols=86 Identities=21% Similarity=0.287 Sum_probs=50.6
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccc-cccEEeeechhhcccCCCHHHHHHHHHHHHhC-CCCCCccchhhhHHH
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEF-DGSSFLADVREKCDKEGSVISLQKQLLSDLLK-LADNSIRNVYDGINM 283 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~-~~~~~~~~~~~~~~~ 283 (1278)
++.-++||.|+-|.||||++..++..+.+.. +..... .+...+-.+.+-..+.++. .-++. ..-....+..-+.+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~l-SLDDlYlthadrl~La~q~-npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATL-SLDDLYLTHADRLRLARQV-NPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEe-ehhhhhcchHHHHHHHHhc-CchhcccCCCCCCchHHHHHH
Confidence 4578999999999999999999998776665 333333 2333333333233333333 11222 222334556666666
Q ss_pred HHHHHcCCCc
Q 000802 284 LRIRLRRKKV 293 (1278)
Q Consensus 284 l~~~L~~kr~ 293 (1278)
+....+++.-
T Consensus 126 Lnai~~g~~~ 135 (300)
T COG4240 126 LNAIARGGPT 135 (300)
T ss_pred HHHHhcCCCC
Confidence 7666666643
No 418
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.81 E-value=0.53 Score=49.62 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCchhHHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
-.+++|+|..|.|||||++.++.
T Consensus 33 Ge~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 33 GTLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 46899999999999999999985
No 419
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=92.80 E-value=0.27 Score=56.01 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.3
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
+.+..+|..+-....++.|+|.+|+|||||+..++.
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~ 118 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAV 118 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHH
Confidence 445566655545678999999999999999988875
No 420
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.79 E-value=0.16 Score=58.80 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=39.5
Q ss_pred CCcccchHHHHHHHHHhhhc---------C---CCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 184 PKELVGIESRLEKLKVHMDT---------R---SNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
..+++|.+..++.+...+.. . ....+-+.++|++|+||||||+.+...+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 35689999999888776632 0 0113678999999999999999999876543
No 421
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.75 E-value=0.28 Score=50.71 Aligned_cols=104 Identities=13% Similarity=0.107 Sum_probs=54.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeec--hhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADV--REKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLR 285 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~--~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~ 285 (1278)
-.+++|.|..|.|||||++.+..... ...+.+.+... ....+.. .....+...-.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~i~~~~q~~--------------------~LSgGq~qrv~la 83 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLI-PNGDNDEWDGITPVYKPQYI--------------------DLSGGELQRVAIA 83 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC-CCCcEEEECCEEEEEEcccC--------------------CCCHHHHHHHHHH
Confidence 35899999999999999999886432 22344444321 1000000 0111112233445
Q ss_pred HHHcCCCceEEEeCCCCh---hh---hhHhhcCCCCCCCCcEEEEEeCChhhhh
Q 000802 286 IRLRRKKVLVVIDDVAHP---DH---LRSLVGEPDWFGPGSQIIITTRNEHLLK 333 (1278)
Q Consensus 286 ~~L~~kr~LlVLDdv~~~---~~---~~~l~~~~~~~~~gs~IIiTTR~~~v~~ 333 (1278)
+.+..++-++++|.--.. .. +..+...... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHH
Confidence 556677889999986321 11 2222221111 12356777777765544
No 422
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.75 E-value=0.24 Score=56.54 Aligned_cols=111 Identities=18% Similarity=0.152 Sum_probs=61.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRI 286 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~ 286 (1278)
....++|.|..|.||||+++++...+.... ..+.+.+..+..-....... +...............+.++.
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~--------l~~~~~~~~~~~~~~~~~l~~ 213 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVH--------LFYSKGGQGLAKVTPKDLLQS 213 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEE--------EEecCCCCCcCccCHHHHHHH
Confidence 346899999999999999999987664332 23334333332111100000 000000011111233556777
Q ss_pred HHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcE-EEEEeCChh
Q 000802 287 RLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQ-IIITTRNEH 330 (1278)
Q Consensus 287 ~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~-IIiTTR~~~ 330 (1278)
.|+..+=.||+|.+...+.++.+.... .|.. ++.|+....
T Consensus 214 ~Lr~~pd~ii~gE~r~~e~~~~l~a~~----~g~~~~i~T~Ha~~ 254 (308)
T TIGR02788 214 CLRMRPDRIILGELRGDEAFDFIRAVN----TGHPGSITTLHAGS 254 (308)
T ss_pred HhcCCCCeEEEeccCCHHHHHHHHHHh----cCCCeEEEEEeCCC
Confidence 888889999999999877665444331 2322 466665543
No 423
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=92.74 E-value=0.095 Score=53.83 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=30.3
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh-ccccccEEeeechhhcc
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS-HEFDGSSFLADVREKCD 250 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~-~~f~~~~~~~~~~~~~~ 250 (1278)
..++.+.|+.|+|||.||+++++.+. ......+ ..++.+...
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~-~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLI-RIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEE-EEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchH-HHhhhcccc
Confidence 45788999999999999999999886 4444333 334555433
No 424
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.72 E-value=0.27 Score=61.91 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCchhHHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
-..|+|+|..|.|||||||.+..
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999864
No 425
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.68 E-value=0.5 Score=54.19 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.++|.++|+.|+||||-..+++.+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~ 228 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV 228 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999987656555443
No 426
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.68 E-value=0.096 Score=54.34 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=22.4
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
++|.+.|++|+||||+|+++.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987654
No 427
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=92.68 E-value=0.21 Score=53.24 Aligned_cols=26 Identities=35% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.-++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 46889999999999999999987643
No 428
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.67 E-value=0.4 Score=54.04 Aligned_cols=104 Identities=22% Similarity=0.160 Sum_probs=54.0
Q ss_pred HHHHHhhhc-CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCC
Q 000802 195 EKLKVHMDT-RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNS 273 (1278)
Q Consensus 195 ~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~ 273 (1278)
..|...|.. +-..-+++-|+|+.|+||||||..+.......-..++|+. ...... ......+--++-..--..
T Consensus 39 ~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID-~e~~ld-----~~~a~~lGvdl~rllv~~ 112 (322)
T PF00154_consen 39 PALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID-AEHALD-----PEYAESLGVDLDRLLVVQ 112 (322)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE-SSS--------HHHHHHTT--GGGEEEEE
T ss_pred cccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec-Ccccch-----hhHHHhcCccccceEEec
Confidence 345555642 2234579999999999999999988877655555566664 222111 111111111110000011
Q ss_pred ccchhhhHHHHHHHHcC-CCceEEEeCCCChh
Q 000802 274 IRNVYDGINMLRIRLRR-KKVLVVIDDVAHPD 304 (1278)
Q Consensus 274 ~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~ 304 (1278)
+...++....+...++. ..-++|+|-|....
T Consensus 113 P~~~E~al~~~e~lirsg~~~lVVvDSv~al~ 144 (322)
T PF00154_consen 113 PDTGEQALWIAEQLIRSGAVDLVVVDSVAALV 144 (322)
T ss_dssp -SSHHHHHHHHHHHHHTTSESEEEEE-CTT-B
T ss_pred CCcHHHHHHHHHHHhhcccccEEEEecCcccC
Confidence 23344555555555554 44689999986553
No 429
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.64 E-value=0.22 Score=63.79 Aligned_cols=48 Identities=21% Similarity=0.325 Sum_probs=37.1
Q ss_pred CcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 185 KELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
..++|....+.++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s 423 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 423 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence 468999888888776665322333568899999999999999998743
No 430
>PRK12678 transcription termination factor Rho; Provisional
Probab=92.63 E-value=0.22 Score=59.38 Aligned_cols=94 Identities=18% Similarity=0.153 Sum_probs=51.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccc-cccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccc----hhhhHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEF-DGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRN----VYDGIN 282 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f-~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~----~~~~~~ 282 (1278)
-+..+|+|.+|+|||||++.+++.+.... +..+++.-|.+.... +..+.+.+-.++.......... .....-
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai 492 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELAI 492 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998775433 344445555554322 3333332211111111111111 111122
Q ss_pred HHHHHH--cCCCceEEEeCCCChh
Q 000802 283 MLRIRL--RRKKVLVVIDDVAHPD 304 (1278)
Q Consensus 283 ~l~~~L--~~kr~LlVLDdv~~~~ 304 (1278)
.+.+++ .++.+||++|++-...
T Consensus 493 ~~Ae~fre~G~dVlillDSlTR~A 516 (672)
T PRK12678 493 ERAKRLVELGKDVVVLLDSITRLG 516 (672)
T ss_pred HHHHHHHHcCCCEEEEEeCchHHH
Confidence 233444 5789999999986543
No 431
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.60 E-value=0.17 Score=62.04 Aligned_cols=49 Identities=22% Similarity=0.346 Sum_probs=39.7
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
...++|....+.++.+.+..-...-..|.|+|..|+|||++|+++++.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s 234 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAAS 234 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 4578999999988888776544445578899999999999999998753
No 432
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=92.58 E-value=0.35 Score=54.57 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHHHHHcCCCceEEEeCCCCh-hh---------hhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccce
Q 000802 281 INMLRIRLRRKKVLVVIDDVAHP-DH---------LRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKV 340 (1278)
Q Consensus 281 ~~~l~~~L~~kr~LlVLDdv~~~-~~---------~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~ 340 (1278)
...|...+..+.-+++.|.+... +. +..+.. ..|+.+++.|+.+.+.+....+..
T Consensus 515 R~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaR-----e~giTlivvThrpEv~~AL~PD~l 579 (593)
T COG2401 515 RAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR-----EAGITLIVVTHRPEVGNALRPDTL 579 (593)
T ss_pred HHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHH-----HhCCeEEEEecCHHHHhccCCcee
Confidence 34677778888899999987432 11 222222 257778888888888887766654
No 433
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.57 E-value=0.35 Score=55.42 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=28.0
Q ss_pred HHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 196 KLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 196 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.+..+|..+-....++-|+|.+|+||||++.+++...
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~ 119 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNV 119 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445565443456788999999999999999987654
No 434
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.53 E-value=0.26 Score=56.20 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+.+.|++|.||||+++.+.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 435
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.52 E-value=0.37 Score=50.56 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=26.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccccccEEeeech
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVR 246 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~ 246 (1278)
.|+|.|-||+||||+|..++.++..+-...+.+.+..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaD 38 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDAD 38 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCC
Confidence 5899999999999999987766654432344444433
No 436
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.47 E-value=0.63 Score=48.79 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=36.3
Q ss_pred HHHHHHHcCCCceEEEeCCCChhhhhHhh---cCCC-CCCCCcEEEEEeCChhhhhhcCccceE
Q 000802 282 NMLRIRLRRKKVLVVIDDVAHPDHLRSLV---GEPD-WFGPGSQIIITTRNEHLLKLHRVRKVY 341 (1278)
Q Consensus 282 ~~l~~~L~~kr~LlVLDdv~~~~~~~~l~---~~~~-~~~~gs~IIiTTR~~~v~~~~~~~~~~ 341 (1278)
..+.+.+--++-+.|||..+.--+++++. .... ...+|+-++|.|..+.++.....+.++
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 34455555678899999877643333221 1111 124577788888888888776655543
No 437
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.45 E-value=0.35 Score=61.87 Aligned_cols=111 Identities=18% Similarity=0.186 Sum_probs=57.8
Q ss_pred CCCceEEEeCCCCh---hhhh----HhhcCCCCCCCCcEEEEEeCChhhhhhcCcc-ce--EecCCCCHHHHHHHHHHhh
Q 000802 290 RKKVLVVIDDVAHP---DHLR----SLVGEPDWFGPGSQIIITTRNEHLLKLHRVR-KV--YKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~---~~~~----~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~-~~--~~l~~L~~~ea~~Lf~~~a 359 (1278)
..+-|+++|..-.- ..-. .++..+. ..|+.+|+||....+....... .+ +.+. ++.+ ... |..+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEEE
Confidence 47899999998542 2222 2222221 3578999999998764432111 11 1110 1111 100 11111
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHHHHh
Q 000802 360 FDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALERIK 410 (1278)
Q Consensus 360 f~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~ 410 (1278)
....+. ..-|-+|++++ |+|-.+..-|..+.+....+.+..+++|.
T Consensus 476 -~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~ 521 (771)
T TIGR01069 476 -LKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLS 521 (771)
T ss_pred -CCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 111111 12355566555 89988888888887665566666666654
No 438
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=92.42 E-value=0.35 Score=51.40 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHH
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
.-.+++|+|..|.|||||.+.++..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998864
No 439
>PRK05973 replicative DNA helicase; Provisional
Probab=92.42 E-value=0.39 Score=51.89 Aligned_cols=38 Identities=16% Similarity=0.046 Sum_probs=27.6
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..-.++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34568899999999999999988765544434455553
No 440
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=92.38 E-value=0.27 Score=58.27 Aligned_cols=92 Identities=25% Similarity=0.238 Sum_probs=50.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCC-------CCCccc----
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-------DNSIRN---- 276 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-------~~~~~~---- 276 (1278)
-+-++|.|.+|+|||||+..+.+....+....+.+..+.+..+. +..+...+...-.... .....-
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rE---v~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSRE---GHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHH---HHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 35689999999999999999887765443333333345553222 4444444332210000 000000
Q ss_pred hhhhHHHHHHHH---cCCCceEEEeCCCC
Q 000802 277 VYDGINMLRIRL---RRKKVLVVIDDVAH 302 (1278)
Q Consensus 277 ~~~~~~~l~~~L---~~kr~LlVLDdv~~ 302 (1278)
.......+.+++ +++++|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 011122344444 37899999999844
No 441
>PRK05439 pantothenate kinase; Provisional
Probab=92.35 E-value=0.18 Score=56.59 Aligned_cols=31 Identities=35% Similarity=0.438 Sum_probs=25.9
Q ss_pred CCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 204 RSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 204 ~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
......+|||.|.+|+||||+|+.+...+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999886653
No 442
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=92.35 E-value=0.68 Score=48.24 Aligned_cols=110 Identities=19% Similarity=0.194 Sum_probs=57.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc---ccc-cEEeeechhhc-ccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHH
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE---FDG-SSFLADVREKC-DKEGSVISLQKQLLSDLLKLADNSIRNVYDGINML 284 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~---f~~-~~~~~~~~~~~-~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1278)
-..|.|++|+|||||.+.++.-++.. |.. .+-+.+-+... .......+.....--+++. ......-++
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld-------~cpk~~gmm 211 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLD-------PCPKAEGMM 211 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcc-------cchHHHHHH
Confidence 36789999999999999999766543 332 22222222211 1100011111111111111 111111222
Q ss_pred HHHHcCCCceEEEeCCCChhhhhHhhcCCCCCCCCcEEEEEeCCh
Q 000802 285 RIRLRRKKVLVVIDDVAHPDHLRSLVGEPDWFGPGSQIIITTRNE 329 (1278)
Q Consensus 285 ~~~L~~kr~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IIiTTR~~ 329 (1278)
...-..-+=++|+|.+-..++..++.... ..|.++|.|..--
T Consensus 212 maIrsm~PEViIvDEIGt~~d~~A~~ta~---~~GVkli~TaHG~ 253 (308)
T COG3854 212 MAIRSMSPEVIIVDEIGTEEDALAILTAL---HAGVKLITTAHGN 253 (308)
T ss_pred HHHHhcCCcEEEEeccccHHHHHHHHHHH---hcCcEEEEeeccc
Confidence 22223467799999999888776666553 4677777665543
No 443
>PRK02496 adk adenylate kinase; Provisional
Probab=92.35 E-value=0.42 Score=50.01 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=20.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.+.|.|++|.||||+|+.+...+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999998765
No 444
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.32 E-value=0.13 Score=53.38 Aligned_cols=25 Identities=36% Similarity=0.562 Sum_probs=22.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
+|+|.|.+|.||||||+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 445
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.31 E-value=0.11 Score=53.78 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.6
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998775
No 446
>PLN02674 adenylate kinase
Probab=92.27 E-value=0.83 Score=49.62 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
..|.|.|++|.||||+|+.++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~ 55 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEY 55 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457799999999999999998755
No 447
>PRK13949 shikimate kinase; Provisional
Probab=92.23 E-value=0.11 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=21.6
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
-|.|+|+.|.||||+|+.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 448
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.21 E-value=0.31 Score=57.36 Aligned_cols=93 Identities=24% Similarity=0.238 Sum_probs=52.2
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCC-------CCCccc----
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLA-------DNSIRN---- 276 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~-------~~~~~~---- 276 (1278)
-+-++|.|.+|+|||||+..+......+....+.+.-+.+.... +..+.+.+...-.... .....-
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rE---v~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchH---HHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 35689999999999999999987665544444444456554322 4444444432210000 000000
Q ss_pred hhhhHHHHHHHH---cCCCceEEEeCCCCh
Q 000802 277 VYDGINMLRIRL---RRKKVLVVIDDVAHP 303 (1278)
Q Consensus 277 ~~~~~~~l~~~L---~~kr~LlVLDdv~~~ 303 (1278)
.....-.+.+++ +++++|+++||+-.-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 011122344555 468999999998543
No 449
>PRK13948 shikimate kinase; Provisional
Probab=92.20 E-value=0.13 Score=53.46 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..+.|.++||.|+||||+++.+.+++..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4577889999999999999999987743
No 450
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=92.15 E-value=0.35 Score=55.46 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=27.7
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHH
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
..|..+|..+-....++-|.|.+|+|||+||..++-
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~ 145 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCV 145 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHH
Confidence 445566654445567889999999999999987774
No 451
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.14 E-value=0.19 Score=49.76 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=23.5
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
++|.|+|..|+|||||++.+.+.+..+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~ 27 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR 27 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc
Confidence 478999999999999999999887644
No 452
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.12 E-value=1.6 Score=47.72 Aligned_cols=120 Identities=19% Similarity=0.265 Sum_probs=69.7
Q ss_pred CCCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHH
Q 000802 182 KIPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQ 261 (1278)
Q Consensus 182 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ 261 (1278)
...+.|+|-..- .++..++.......+.+.++|+.|+|||+-++.+++.... .|+... ++......+...
T Consensus 69 ~~~~~~l~tkt~-r~~~~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~p~-----~~l~~~----~p~~~a~~~i~~ 138 (297)
T COG2842 69 KLAPDFLETKTV-RRIFFRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSNPN-----ALLIEA----DPSYTALVLILI 138 (297)
T ss_pred cccccccccchh-HhHhhhhhhhhhcCceEEEeccccchhHHHHHhhcccCcc-----ceeecC----ChhhHHHHHHHH
Confidence 355677775543 2333334333333458899999999999999998875422 222211 111113334444
Q ss_pred HHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh--hhhHhhcCCC
Q 000802 262 LLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD--HLRSLVGEPD 314 (1278)
Q Consensus 262 ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~--~~~~l~~~~~ 314 (1278)
+....+... ...+.+....+..++++..-+|++|..+... .++.+.....
T Consensus 139 i~~~~~~~~---~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 139 ICAAAFGAT---DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred HHHHHhccc---chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHH
Confidence 444433322 2345566777777888888999999987653 3555544433
No 453
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.10 E-value=0.22 Score=50.66 Aligned_cols=122 Identities=21% Similarity=0.266 Sum_probs=62.1
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRL 288 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L 288 (1278)
.+++|.|..|.|||||++.+...+. ...+.+++....- . ... ..... ..+.-.. +...-+...-.+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~-~-~~~-~~~~~----~~i~~~~--qlS~G~~~r~~l~~~l 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDI-A-KLP-LEELR----RRIGYVP--QLSGGQRQRVALARAL 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEc-c-cCC-HHHHH----hceEEEe--eCCHHHHHHHHHHHHH
Confidence 6899999999999999999986543 2344455432110 0 000 11110 0000000 0111122233455556
Q ss_pred cCCCceEEEeCCCCh---hh---hhHhhcCCCCCCCCcEEEEEeCChhhhhhcCccceEec
Q 000802 289 RRKKVLVVIDDVAHP---DH---LRSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRKVYKL 343 (1278)
Q Consensus 289 ~~kr~LlVLDdv~~~---~~---~~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~~~~l 343 (1278)
...+-++++|+.... .. +..+..... ..+..+|++|.+....... .++++.+
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l 153 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVL 153 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 667889999987432 22 222222211 2256788888887665543 2344443
No 454
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.10 E-value=0.099 Score=54.35 Aligned_cols=23 Identities=39% Similarity=0.716 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+|+|.|.+|.||||+|+.+...+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 455
>PRK06217 hypothetical protein; Validated
Probab=92.09 E-value=0.11 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.5
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.|.|.|++|.||||+|+++..++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 456
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=92.09 E-value=0.099 Score=56.30 Aligned_cols=24 Identities=50% Similarity=0.688 Sum_probs=21.9
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+|||.|..|+||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 457
>PHA02244 ATPase-like protein
Probab=92.09 E-value=0.18 Score=57.50 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=33.7
Q ss_pred CCCCcccchHHHH----HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 182 KIPKELVGIESRL----EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 182 ~~~~~~vGr~~~~----~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.....++|..... ..+..++..+ .-|.|+|++|+|||+||++++.....
T Consensus 93 ~~d~~~ig~sp~~~~~~~ri~r~l~~~----~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 93 GIDTTKIASNPTFHYETADIAKIVNAN----IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred hCCCcccCCCHHHHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4556677755544 3444444332 24678999999999999999987643
No 458
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.08 E-value=0.49 Score=48.90 Aligned_cols=25 Identities=36% Similarity=0.686 Sum_probs=21.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
-.+++|+|..|.|||||++.++...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999988643
No 459
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.01 E-value=0.64 Score=59.60 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=23.2
Q ss_pred cccchHHHHHHHHHhCCCceeecCc
Q 000802 25 TRKSFTNHLYAALKNKGIYVFRDDK 49 (1278)
Q Consensus 25 ~~~~~~~~l~~~L~~~g~~~~~d~~ 49 (1278)
-|..|+++...+|++.|+..-+|.+
T Consensus 176 ~R~~wa~~~N~~l~~~g~~~rid~r 200 (744)
T TIGR02768 176 WREQWAELANEHLAEAGLDLRIDHR 200 (744)
T ss_pred HHHHHHHHHHHHHHHcCCCceEccc
Confidence 4788999999999999999999988
No 460
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=91.99 E-value=1.6 Score=49.60 Aligned_cols=53 Identities=23% Similarity=0.183 Sum_probs=33.1
Q ss_pred ceEecCCCCHHHHHHHHHHhhcCC----CCCChhHHHHHHHHHHHcCCCchHHHHHHhhh
Q 000802 339 KVYKLEALTYDEAFRLLCLKAFDT----HKPFEEYVELAESVVKYASGLPLALKVLGSFL 394 (1278)
Q Consensus 339 ~~~~l~~L~~~ea~~Lf~~~af~~----~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L 394 (1278)
.+++|+..+.+|+.++...+.-.. ..+. ++.-+++.-..+|+|--++-++.++
T Consensus 404 ~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 404 VPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred CccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 367899999999998887664221 1111 2344566666788985555555443
No 461
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.99 E-value=0.81 Score=54.73 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+|++++|+.|+||||++..++..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999987653
No 462
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.94 E-value=0.11 Score=55.24 Aligned_cols=23 Identities=43% Similarity=0.657 Sum_probs=21.1
Q ss_pred EEEEEecCCCchhHHHHHHHHHh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+|+|.|..|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998766
No 463
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=1.5 Score=53.66 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=56.4
Q ss_pred cccchHHHHHHHHHhhhc----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCH
Q 000802 186 ELVGIESRLEKLKVHMDT----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSV 255 (1278)
Q Consensus 186 ~~vGr~~~~~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~ 255 (1278)
++=|.++-..+|.+-+.. +-....=|.++|++|.|||-+|++|+...+= .|++ |. -
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----~FlS-VK--------G 738 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----NFLS-VK--------G 738 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-----eEEe-ec--------C
Confidence 456788888887766542 1122345779999999999999999976542 2343 21 1
Q ss_pred HHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCCCceEEEeCCCChh
Q 000802 256 ISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRKKVLVVIDDVAHPD 304 (1278)
Q Consensus 256 ~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~ 304 (1278)
.+++.... ++. .+...+...+.-..++++|.+|.++...
T Consensus 739 PELLNMYV----GqS------E~NVR~VFerAR~A~PCVIFFDELDSlA 777 (953)
T KOG0736|consen 739 PELLNMYV----GQS------EENVREVFERARSAAPCVIFFDELDSLA 777 (953)
T ss_pred HHHHHHHh----cch------HHHHHHHHHHhhccCCeEEEeccccccC
Confidence 12222222 211 1112223333334689999999987653
No 464
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=91.89 E-value=0.19 Score=53.43 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=29.8
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhh
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREK 248 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 248 (1278)
+...++.++||+|.||||..+.++..+..++.. .++.|+...
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLDPA 58 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLDPA 58 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCCHH
Confidence 345678899999999999999998777665543 233344443
No 465
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=91.88 E-value=0.12 Score=51.76 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhh
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
+|.|.|+.|.||||+|+.+..+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998763
No 466
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.83 E-value=0.13 Score=51.93 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEecCCCchhHHHHHHHHHhh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
|.|+|++|.||||+|+.+...+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999998763
No 467
>PRK13946 shikimate kinase; Provisional
Probab=91.83 E-value=0.13 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.489 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+.|.+.|+.|+||||+|+.+++++.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998874
No 468
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.83 E-value=0.27 Score=54.48 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=29.9
Q ss_pred CCeeEEEEEecCCCchhHHHHHHHHHhhccccccEE
Q 000802 206 NDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF 241 (1278)
Q Consensus 206 ~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1278)
.++.++.|.|.+|.|||||+..+...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468899999999999999999999988766544443
No 469
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=91.83 E-value=0.14 Score=51.76 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=23.2
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEF 236 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f 236 (1278)
-|.++||.|+||||+.+++++.+.-.|
T Consensus 4 ~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 4 NIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred cEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 478999999999999999998776554
No 470
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.78 E-value=0.18 Score=51.48 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 207 DVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 207 ~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
...+++|+|..|.|||||++.+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999987754
No 471
>PLN02459 probable adenylate kinase
Probab=91.78 E-value=0.67 Score=50.62 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=47.4
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLR 289 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~ 289 (1278)
.+.|.|++|+||||+|+.+...+. |....-=.-+++.......+....+.++.+ .. .-..+.....+++++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~----G~--lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQ----GK--LVPDEIIFSLLSKRLE 102 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHc----CC--ccCHHHHHHHHHHHHh
Confidence 366789999999999999987653 221111011222222211122222222221 11 1122233455666664
Q ss_pred C----CCceEEEeCCC-ChhhhhHhh
Q 000802 290 R----KKVLVVIDDVA-HPDHLRSLV 310 (1278)
Q Consensus 290 ~----kr~LlVLDdv~-~~~~~~~l~ 310 (1278)
. .+--+|||+.- +.+|.+.|-
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~Le 128 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEILE 128 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHHH
Confidence 3 34579999985 445655553
No 472
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=91.75 E-value=0.49 Score=61.97 Aligned_cols=41 Identities=22% Similarity=0.206 Sum_probs=31.8
Q ss_pred cccchHHHHHHHHHhCCCceeecCccc-------cCCCCChHHHHHHHH
Q 000802 25 TRKSFTNHLYAALKNKGIYVFRDDKEL-------EKGGSISPGLLKVIE 66 (1278)
Q Consensus 25 ~~~~~~~~l~~~L~~~g~~~~~d~~~~-------~~g~~~~~~~~~~i~ 66 (1278)
-|..|.+....+|++.|+..-+|.+.+ +|..++.+. ..+|+
T Consensus 194 ~R~~Wa~~~N~~L~~~G~~~RIDhRS~~~QGi~~~Pt~H~G~~-a~~me 241 (1102)
T PRK13826 194 LRDGWFACQNHHLALAGLDLRIDGRSYEKQGIELEPTIHLGVG-AKAIE 241 (1102)
T ss_pred HHHHHHHHHHHHHHhcCCCceEccchHHHcCcccCCccccCHH-HHHHH
Confidence 478899999999999999999999854 566666654 33444
No 473
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=91.74 E-value=5.5 Score=44.89 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=56.7
Q ss_pred CCCceEEEeCCCChhh--hhHhhcCCCCCCCCcEEEEEe-CChhhhhh-cCccceEecCCCCHHHHHHHHHHhhcCCCCC
Q 000802 290 RKKVLVVIDDVAHPDH--LRSLVGEPDWFGPGSQIIITT-RNEHLLKL-HRVRKVYKLEALTYDEAFRLLCLKAFDTHKP 365 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~~~--~~~l~~~~~~~~~gs~IIiTT-R~~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~ 365 (1278)
+++=++|+|+++.... ...++..+..-++.+.+|++| ....+... .....++++.+++.++..+.+.... .
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~~-----~ 163 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKN-----K 163 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHcC-----C
Confidence 4667888999876643 445555444445677777655 44444433 3345689999999999998876541 1
Q ss_pred ChhHHHHHHHHHHHcCCCchHHHHH
Q 000802 366 FEEYVELAESVVKYASGLPLALKVL 390 (1278)
Q Consensus 366 ~~~~~~~~~~i~~~~~GlPLal~~l 390 (1278)
++ +.+..++..++|.=-|+..+
T Consensus 164 ~~---~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 164 EK---EYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred Ch---hHHHHHHHHcCCHHHHHHHH
Confidence 11 33555666666622444443
No 474
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.74 E-value=0.13 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHHhh
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+++|.|+.|+||||+|+.+...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987653
No 475
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=91.73 E-value=0.22 Score=57.56 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=54.3
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccc--cE-EeeechhhcccCCCHHHHHHHHHHHHhCCCCCCccchhhhHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDG--SS-FLADVREKCDKEGSVISLQKQLLSDLLKLADNSIRNVYDGINML 284 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~--~~-~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l 284 (1278)
-..|.|+|+.|.||||+++++...+....+. .+ .+.+-.+. . ....... .....+... ..+.......+
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~-~----~~~~~~~--~~~v~Q~~v-~~~~~~~~~~l 205 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF-V----YDEIETI--SASVCQSEI-PRHLNNFAAGV 205 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE-e----ccccccc--cceeeeeec-cccccCHHHHH
Confidence 4689999999999999999998877543332 22 22221111 0 0000000 000000000 11122345667
Q ss_pred HHHHcCCCceEEEeCCCChhhhhHhh
Q 000802 285 RIRLRRKKVLVVIDDVAHPDHLRSLV 310 (1278)
Q Consensus 285 ~~~L~~kr~LlVLDdv~~~~~~~~l~ 310 (1278)
+..|+..+-.+++..+.+.+..+...
T Consensus 206 ~~aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 206 RNALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HHHhccCCCEEeeeeeCCHHHHHHHH
Confidence 78889999999999998888765443
No 476
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=91.72 E-value=0.52 Score=57.97 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=36.0
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
..+.++|....+.++...+..-...-..|.|+|..|.||+++|++++..
T Consensus 202 ~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 202 AFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHh
Confidence 4557999988888777666422222344779999999999999997653
No 477
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=91.69 E-value=0.25 Score=60.97 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=41.1
Q ss_pred CCCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 183 IPKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 183 ~~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
.++..+-|.+-.+.|.+..........+|.|+|+.|.||||+|++++.++..
T Consensus 367 ~pP~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 4556667777777777777665566678999999999999999999987754
No 478
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=91.68 E-value=0.12 Score=51.12 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
+++|+|+.|+|||||++.+.......
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 37899999999999999998765443
No 479
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=91.68 E-value=0.23 Score=58.52 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=35.8
Q ss_pred CcccchHHHHHHHHHhhh-------cC-----C--CCeeEEEEEecCCCchhHHHHHHHHHhhc
Q 000802 185 KELVGIESRLEKLKVHMD-------TR-----S--NDVRMIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~-------~~-----~--~~~~vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
..+||.+..++.+...+. .. + ...+-+.++|++|+|||++|+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 458899888887754431 10 0 12356889999999999999999976643
No 480
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.65 E-value=0.55 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred EEEEecCCCchhHHHHHHHHHh
Q 000802 211 IGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
+.|+|++|+||||+|+.+....
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998876
No 481
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.63 E-value=0.59 Score=57.60 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCCCC--
Q 000802 194 LEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKLAD-- 271 (1278)
Q Consensus 194 ~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~~~-- 271 (1278)
+..|.+.|..+-..-+++.|.|.+|+|||++|.++......++...+.+....+. ..++.+++.+--.....
T Consensus 17 I~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~------~~~i~~~~~~~g~d~~~~~ 90 (509)
T PRK09302 17 IEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEES------PEDIIRNVASFGWDLQKLI 90 (509)
T ss_pred chhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCC------HHHHHHHHHHcCCCHHHHh
Q ss_pred -------------------CCccchhhhHHHHHHHHcC-CCceEEEeCCCC-----------hhhhhHhhcCCCCCCCCc
Q 000802 272 -------------------NSIRNVYDGINMLRIRLRR-KKVLVVIDDVAH-----------PDHLRSLVGEPDWFGPGS 320 (1278)
Q Consensus 272 -------------------~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~-----------~~~~~~l~~~~~~~~~gs 320 (1278)
....+.+.....+.+.... +.-.+|+|.+.. ...+..+...+. ..|.
T Consensus 91 ~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~~~d~~~~~r~~l~~L~~~Lk--~~g~ 168 (509)
T PRK09302 91 DEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFSGFSNEAVVRRELRRLFAWLK--QKGV 168 (509)
T ss_pred hCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHhhccCHHHHHHHHHHHHHHHH--hCCC
Q ss_pred EEEEEe
Q 000802 321 QIIITT 326 (1278)
Q Consensus 321 ~IIiTT 326 (1278)
.+|+|+
T Consensus 169 TvLlt~ 174 (509)
T PRK09302 169 TAVITG 174 (509)
T ss_pred EEEEEE
No 482
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=91.61 E-value=0.15 Score=50.13 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.3
Q ss_pred EEEEEecCCCchhHHHHHHHHHhhc
Q 000802 210 MIGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 210 vv~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
+|.|.|++|.||||+|+.+++.+.-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC
Confidence 6889999999999999999987653
No 483
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=91.59 E-value=0.53 Score=60.45 Aligned_cols=111 Identities=23% Similarity=0.239 Sum_probs=58.2
Q ss_pred CCCceEEEeCCCCh---hh---h-hHhhcCCCCCCCCcEEEEEeCChhhhhhcCccc---eEecCCCCHHHHHHHHHHhh
Q 000802 290 RKKVLVVIDDVAHP---DH---L-RSLVGEPDWFGPGSQIIITTRNEHLLKLHRVRK---VYKLEALTYDEAFRLLCLKA 359 (1278)
Q Consensus 290 ~kr~LlVLDdv~~~---~~---~-~~l~~~~~~~~~gs~IIiTTR~~~v~~~~~~~~---~~~l~~L~~~ea~~Lf~~~a 359 (1278)
..+-|+++|..-.- .. + ..+...+. ..|+.+|+||....+........ ...+. ++. +... +. +-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~~-Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-PT-YR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-EE-EE
Confidence 47889999997532 11 1 12222221 34789999999987765432211 11111 111 1111 11 11
Q ss_pred cCCCCCChhHHHHHHHHHHHcCCCchHHHHHHhhhcCCCHHHHHHHHHHHh
Q 000802 360 FDTHKPFEEYVELAESVVKYASGLPLALKVLGSFLFGRAVHEWTSALERIK 410 (1278)
Q Consensus 360 f~~~~~~~~~~~~~~~i~~~~~GlPLal~~lg~~L~~~~~~~w~~~l~~l~ 410 (1278)
+....+. ..-|-+|++++ |+|-.+..-|..+.+....+.+..++++.
T Consensus 480 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~ 526 (782)
T PRK00409 480 LLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLE 526 (782)
T ss_pred EeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1111111 12355565555 89999888888887766666666666654
No 484
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.54 E-value=0.03 Score=59.44 Aligned_cols=75 Identities=24% Similarity=0.275 Sum_probs=48.3
Q ss_pred cCceEEEecCCCCCCCCcccccccchhhcccccccccccc--ccccccccceecccCCcccccCCC------CCCCCCcc
Q 000802 579 SKLRLLDWHGYPLKSLPLNLQLDKAVEFSMCYSCIEELWT--GIKPLNMLKVMKLSHSENLIKTPN------FTEVPNLE 650 (1278)
Q Consensus 579 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~l~~s~i~~l~~--~~~~l~~L~~L~Ls~~~~~~~~~~------~~~l~~L~ 650 (1278)
..|.+|.++-|.+.+|...-.+.+|.+|.|..|+|..+-+ -++++++||.|-|..|......+. +.-+|||+
T Consensus 41 p~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLk 120 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLK 120 (388)
T ss_pred ccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccch
Confidence 3566666667777777766678888888888888876643 366777777777766654333221 44455665
Q ss_pred EEE
Q 000802 651 ELD 653 (1278)
Q Consensus 651 ~L~ 653 (1278)
.||
T Consensus 121 KLD 123 (388)
T KOG2123|consen 121 KLD 123 (388)
T ss_pred hcc
Confidence 554
No 485
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=91.53 E-value=0.17 Score=51.11 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=19.8
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
-.+.|.|+.|+|||||.+.++-
T Consensus 29 e~~~i~G~NG~GKTtLLRilaG 50 (209)
T COG4133 29 EALQITGPNGAGKTTLLRILAG 50 (209)
T ss_pred CEEEEECCCCCcHHHHHHHHHc
Confidence 4688999999999999999984
No 486
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=91.52 E-value=0.79 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.138 Sum_probs=20.9
Q ss_pred eEEEEEecCCCchhHHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
++++|.|+.|.|||||.+.+.-.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999998753
No 487
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=91.49 E-value=0.19 Score=51.39 Aligned_cols=24 Identities=42% Similarity=0.487 Sum_probs=20.4
Q ss_pred EEEEecCCCchhHHHHHHHHHhhc
Q 000802 211 IGIWGMGGLGKTTLARVVYDLISH 234 (1278)
Q Consensus 211 v~I~G~gGiGKTtLA~~v~~~~~~ 234 (1278)
+.|.|..|+|||||++.+++.++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 679999999999999999987754
No 488
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.48 E-value=0.16 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.371 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLIS 233 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~ 233 (1278)
.+.|.|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34688999999999999999998653
No 489
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.45 E-value=1.9 Score=52.68 Aligned_cols=48 Identities=21% Similarity=0.361 Sum_probs=37.8
Q ss_pred CCcccchHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHH
Q 000802 184 PKELVGIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDL 231 (1278)
Q Consensus 184 ~~~~vGr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~ 231 (1278)
.+.++|....+.++.+.+..-...-..|.|.|..|.||+++|+.+++.
T Consensus 211 f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 211 LDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 345899999888888777533333456889999999999999999864
No 490
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.43 E-value=0.44 Score=59.96 Aligned_cols=49 Identities=24% Similarity=0.205 Sum_probs=34.1
Q ss_pred HHHHHhhh-cCCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEee
Q 000802 195 EKLKVHMD-TRSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLA 243 (1278)
Q Consensus 195 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~ 243 (1278)
..|..+|. .+=..-+++-|.|.+|+||||||..++......-..++|+.
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId 95 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID 95 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 45556665 34355688999999999999999887654444434556664
No 491
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=91.43 E-value=1.4 Score=53.25 Aligned_cols=70 Identities=17% Similarity=0.181 Sum_probs=40.0
Q ss_pred chHHHHHHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc-ccccEEeeechhhcccCCCHHHHHHHHHHHH
Q 000802 189 GIESRLEKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE-FDGSSFLADVREKCDKEGSVISLQKQLLSDL 266 (1278)
Q Consensus 189 Gr~~~~~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~-f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l 266 (1278)
|...-...|.+++. +-....++.|-|.+|+||||+|..++...... =..++|+. ... +...+..+++...
T Consensus 177 gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S-lEm------~~~~i~~R~~~~~ 247 (434)
T TIGR00665 177 GVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS-LEM------SAEQLAMRMLSSE 247 (434)
T ss_pred cccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe-CcC------CHHHHHHHHHHHh
Confidence 33333444444442 22344688899999999999999887654322 12344443 221 2555556665543
No 492
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.42 E-value=0.34 Score=52.80 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=31.7
Q ss_pred HHHHHhhhcCCCCeeEEEEEecCCCchhHHHHHHHHHhhcc
Q 000802 195 EKLKVHMDTRSNDVRMIGIWGMGGLGKTTLARVVYDLISHE 235 (1278)
Q Consensus 195 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~ 235 (1278)
.++...+.....+..+|||.|.||+||+||.-++-..+..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 44555555556678899999999999999998888766443
No 493
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=91.41 E-value=0.45 Score=55.72 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=26.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhh
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREK 248 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~ 248 (1278)
-..++|.|..|+|||||++.++..... +..++ ..+.+.
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi-~lIGER 199 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVV-GLVGER 199 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCCCC--CEEEE-EEEcCC
Confidence 357999999999999999988864322 33444 345553
No 494
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=2.9 Score=50.84 Aligned_cols=174 Identities=21% Similarity=0.187 Sum_probs=93.0
Q ss_pred CcccchHHHHHHHHHhhhcCC--------CC---eeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDTRS--------ND---VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~~~--------~~---~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
+++-|+.+..+.+++.+.... -. ..=|.++|++|.|||-||.+++....- .|+. |..
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~-----~fis-vKG------ 734 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNL-----RFIS-VKG------ 734 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCe-----eEEE-ecC------
Confidence 356678887777777765321 11 223789999999999999998864432 2332 211
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHH-HHcCCCceEEEeCCCChh-------------hhhHhhcCCCCC--C
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRI-RLRRKKVLVVIDDVAHPD-------------HLRSLVGEPDWF--G 317 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~-------------~~~~l~~~~~~~--~ 317 (1278)
.+ ++....+.. ++.+..+.. .-.-+++.+.+|.++... ....++..++.. -
T Consensus 735 --PE----lL~KyIGaS-------Eq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 735 --PE----LLSKYIGAS-------EQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred --HH----HHHHHhccc-------HHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 12 222222211 122222333 334699999999987643 144555444311 1
Q ss_pred CCcEEEE-EeCCh----hhhhhcCccceEecCCCCHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHcCCCchH
Q 000802 318 PGSQIII-TTRNE----HLLKLHRVRKVYKLEALTYDEAFRLLCLKAFDTHKPFEEYVELAESVVKYASGLPLA 386 (1278)
Q Consensus 318 ~gs~IIi-TTR~~----~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~i~~~~~GlPLa 386 (1278)
.|.-|+- |||.. .+++-...++.+.-+.-+..|.+++|...+-....+ + .-..+.++.+..|.--|
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~--~-~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD--T-DVDLECLAQKTDGFTGA 872 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc--c-ccchHHHhhhcCCCchh
Confidence 3444543 55643 223333445555666677778888886655221111 1 11234555666665543
No 495
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.36 E-value=0.35 Score=56.24 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.7
Q ss_pred eEEEEEecCCCchhHHHHHHHH
Q 000802 209 RMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 209 ~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
-+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4699999999999999999863
No 496
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=1.2 Score=53.57 Aligned_cols=153 Identities=17% Similarity=0.194 Sum_probs=83.8
Q ss_pred CcccchHHHHHHHHHhhhc-----------CCCCeeEEEEEecCCCchhHHHHHHHHHhhccccccEEeeechhhcccCC
Q 000802 185 KELVGIESRLEKLKVHMDT-----------RSNDVRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSFLADVREKCDKEG 253 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~~~~~~~~~~~~~ 253 (1278)
..+-|....+..+..+..- +....+-+..+|++|.|||-+|++|+++.. ..+|..+..+...+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~peli~k-- 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLINGPELISK-- 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC----ceeEecccHHHHHh--
Confidence 3455666666666555421 224567888999999999999999998765 33444443332211
Q ss_pred CHHHHHHHHHHHHhCCCCCCccchhhhHHHHHHHHcCC-CceEEEeCCCChh------------hhhHhhcCCCCCCCCc
Q 000802 254 SVISLQKQLLSDLLKLADNSIRNVYDGINMLRIRLRRK-KVLVVIDDVAHPD------------HLRSLVGEPDWFGPGS 320 (1278)
Q Consensus 254 ~~~~l~~~ll~~l~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~------------~~~~l~~~~~~~~~gs 320 (1278)
..++ ....+...+.+..+.+ +..|.+|+++..- ....+.....+.++.+
T Consensus 258 ------------~~gE------te~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~ 319 (693)
T KOG0730|consen 258 ------------FPGE------TESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDA 319 (693)
T ss_pred ------------cccc------hHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcC
Confidence 1111 1112233344445556 7888888875432 1112222223334334
Q ss_pred EE--EEEeCChhhhhh----cCccceEecCCCCHHHHHHHHHHhhcC
Q 000802 321 QI--IITTRNEHLLKL----HRVRKVYKLEALTYDEAFRLLCLKAFD 361 (1278)
Q Consensus 321 ~I--IiTTR~~~v~~~----~~~~~~~~l~~L~~~ea~~Lf~~~af~ 361 (1278)
++ |-|||...-... ...++..++.-.+.++-.+++....-+
T Consensus 320 ~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~ 366 (693)
T KOG0730|consen 320 KVIVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKK 366 (693)
T ss_pred cEEEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHh
Confidence 33 345554432211 234556777777777777777666533
No 497
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=91.33 E-value=0.18 Score=52.76 Aligned_cols=34 Identities=29% Similarity=0.342 Sum_probs=28.7
Q ss_pred eeEEEEEecCCCchhHHHHHHHHHhhccccccEE
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYDLISHEFDGSSF 241 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~~~~~~f~~~~~ 241 (1278)
.|++.|+|+.|+|||||++.+.......|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~ 35 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVS 35 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccccccee
Confidence 4789999999999999999999988888854333
No 498
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=91.29 E-value=0.41 Score=52.47 Aligned_cols=91 Identities=15% Similarity=0.078 Sum_probs=46.5
Q ss_pred eeEEEEEecCCCchhHHH-HHHHHHhhccccccEEeeechhhcccCCCHHHHHHHHHHHHhCC-------CCCCccchh-
Q 000802 208 VRMIGIWGMGGLGKTTLA-RVVYDLISHEFDGSSFLADVREKCDKEGSVISLQKQLLSDLLKL-------ADNSIRNVY- 278 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA-~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~~~-------~~~~~~~~~- 278 (1278)
-+-++|.|.+|+|||+|| ..+.+.. +-+..+.+..+.+..+. +..+.+.+...-... ...+.....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~~e---v~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKAST---VAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccchHH---HHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 356899999999999996 4454432 23444344445553222 444444444321000 000000000
Q ss_pred ---hhHHHHHHHH--cCCCceEEEeCCCCh
Q 000802 279 ---DGINMLRIRL--RRKKVLVVIDDVAHP 303 (1278)
Q Consensus 279 ---~~~~~l~~~L--~~kr~LlVLDdv~~~ 303 (1278)
...-.+.+++ +++.+|+|+||+-..
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~ 173 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQ 173 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHH
Confidence 0011223333 478999999998654
No 499
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.26 E-value=0.78 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.170 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCchhHHHHHHHH
Q 000802 208 VRMIGIWGMGGLGKTTLARVVYD 230 (1278)
Q Consensus 208 ~~vv~I~G~gGiGKTtLA~~v~~ 230 (1278)
.+++.|+|+-|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999999874
No 500
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.23 E-value=0.37 Score=45.90 Aligned_cols=48 Identities=17% Similarity=0.334 Sum_probs=34.3
Q ss_pred CcccchHHHHHHHHHhh----hc-CCCCeeEEEEEecCCCchhHHHHHHHHHh
Q 000802 185 KELVGIESRLEKLKVHM----DT-RSNDVRMIGIWGMGGLGKTTLARVVYDLI 232 (1278)
Q Consensus 185 ~~~vGr~~~~~~l~~~L----~~-~~~~~~vv~I~G~gGiGKTtLA~~v~~~~ 232 (1278)
.+++|.+-..+.+...+ .. ..+..-|+..+|.+|+|||.+|+.+++.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 35677665555544444 32 34567889999999999999998888753
Done!