BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000803
(1277 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/161 (29%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 956 LRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKG--KLPSSLKSLQIENLT 1013
LR L I L LPE + ++ E + SL+ G LP+S+ +LQ
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ----N 207
Query: 1014 LESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSL 1073
L+SLKIR+ P L+ L IH L LE+L +R C L + P I+ + P
Sbjct: 208 LKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP-------IFGGRAP----- 254
Query: 1074 AEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIKEC 1114
+ + + C L LP +H+L L+ L ++ C
Sbjct: 255 --------LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 586 TDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMPFGMKE 645
T +R+ P L+ LIL++CS+L+ LP I RL L LD+RG + L +P + +
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 646 L 646
L
Sbjct: 300 L 300
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 57/122 (46%), Gaps = 22/122 (18%)
Query: 552 FKKLRLLSLQG-YYIGELPIPF---------EDLRLLRYLNLADTDIRSLPESSCSLLNL 601
+LR LS++ + ELP P + L L+ L L T IRSLP S +L NL
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 602 EILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMP--FG---------MKELKNLQ 650
+ L +RN S L L I L L LD+RG L+ P FG +K+ NL
Sbjct: 209 KSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 651 TL 652
TL
Sbjct: 268 TL 269
Score = 37.0 bits (84), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 549 LPKF--KKLRLLSLQGYYIG-----ELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNL 601
LP+F + RL LQ I ELP + L L LA +R+LP S SL L
Sbjct: 93 LPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRL 152
Query: 602 EILILRNCSSLIKLPSKI---------RRLINLCHLDIRGAILLKEMPFGMKELKNLQTL 652
L +R C L +LP + + L+NL L + ++ +P + L+NL++L
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 13/102 (12%)
Query: 1014 LESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSL 1073
LE+L + P L L + I L L +L IR CP+L +P+ L + S
Sbjct: 129 LETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLAS----------TDASG 177
Query: 1074 AEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIKECP 1115
+GL N + + + + + +LP + LQ+L+ LKI+ P
Sbjct: 178 EHQGLVN-LQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP 217
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/318 (23%), Positives = 127/318 (39%), Gaps = 47/318 (14%)
Query: 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC 231
+ I GM G GK+ LA E D ++ + WV V D + L T
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 208
Query: 232 DLKTVDEVQVQLKKAVDGKRF---------LLVLDDVWNEDYSLWVDLKAPFLAAAPNSK 282
D + + +++A D R LL+LDDVW+ WV A +
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----WV-----LKAFDSQCQ 259
Query: 283 MIITTRNSHVA-STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVG 341
+++TTR+ V S MGP +E L + + + + E + S ++
Sbjct: 260 ILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHS----IIK 315
Query: 342 KCGGLPLAAKTLGGLLRT--TTYDMWDDILDSKIWDLPRQSS------ILPVLRLSYHHL 393
+C G PL +G LLR ++ + L +K + R+SS + + +S L
Sbjct: 316 ECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEML 375
Query: 394 PSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSI 453
+K + +I KD + K L LW E+++D+ + V++S+
Sbjct: 376 REDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVEDI----LQEFVNKSL 423
Query: 454 F--QRTGFGSSKFAMHDL 469
R G S ++ +HDL
Sbjct: 424 LFCDRNG-KSFRYYLHDL 440
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 78/329 (23%), Positives = 127/329 (38%), Gaps = 69/329 (20%)
Query: 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC 231
+ I GM G GK+ LA E D ++ + WV V D + L T
Sbjct: 156 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQ 214
Query: 232 DLKTVDEVQVQLKKAVDGKRF---------LLVLDDVWNEDYSLWVDLKAPFLAAAPNSK 282
D + + +++A D R LL+LDDVW+ WV A +
Sbjct: 215 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----WV-----LKAFDSQCQ 265
Query: 283 MIITTRNSHVA-STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESF------ 335
+++TTR+ V S MGP +E L G++ LEI F
Sbjct: 266 ILLTTRDKSVTDSVMGPKYVVPVESSL--------------GKE-KGLEILSLFVNMKKA 310
Query: 336 -----RKKVVGKCGGLPLAAKTLGGLLRT--TTYDMWDDILDSKIWDLPRQSS------I 382
++ +C G PL +G LLR ++ + L +K + R+SS +
Sbjct: 311 DLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEAL 370
Query: 383 LPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGS 442
+ +S L +K + +I KD + K L LW E+++D+
Sbjct: 371 DEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILW--------DMETEEVEDI-- 420
Query: 443 QCFHDLVSRSIF--QRTGFGSSKFAMHDL 469
+ V++S+ R G S ++ +HDL
Sbjct: 421 --LQEFVNKSLLFCDRNG-KSFRYYLHDL 446
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 73/289 (25%), Positives = 112/289 (38%), Gaps = 72/289 (24%)
Query: 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK----ALLESIT 227
+ I GM G GK+ LA E D ++ + C S +SI K LL +
Sbjct: 150 VTIYGMAGCGKSVLAAEAVRDHSLLEG---------CFSGGVHWVSIGKQDKSGLLMKLQ 200
Query: 228 SATCDLK-----------TVDEVQVQLKKAVDGK--RFLLVLDDVWNEDYSLWVDLKAPF 274
+ L ++E + +L+ + K R LL+LDDVW+ WV
Sbjct: 201 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV------ 250
Query: 275 LAAAPNS-KMIITTRNSHVA-STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEIS 332
L A N ++++TTR+ V S MGP +E L GR+ LEI
Sbjct: 251 LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGL--------------GRE-KGLEIL 295
Query: 333 ESF-----------RKKVVGKCGGLPLAAKTLGGLLRT--TTYDMWDDILDSKIWDLPRQ 379
F ++ +C G PL +G LLR + + L +K + R+
Sbjct: 296 SLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRK 355
Query: 380 SS------ILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLW 422
SS + + +S L +K + +I KD + K L LW
Sbjct: 356 SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 404
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.0 bits (84), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 111/289 (38%), Gaps = 72/289 (24%)
Query: 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK----ALLESIT 227
+ I GM G GK+ LA E D ++ + C S +SI K LL +
Sbjct: 157 VTIYGMAGCGKSVLAAEAVRDHSLLEG---------CFSGGVHWVSIGKQDKSGLLMKLQ 207
Query: 228 SATCDLK-----------TVDEVQVQLKKAVDGK--RFLLVLDDVWNEDYSLWVDLKAPF 274
+ L ++E + +L+ + K R LL+LDDVW+ WV
Sbjct: 208 NLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----WV------ 257
Query: 275 LAAAPNS-KMIITTRNSHVA-STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEIS 332
L A N ++++TT + V S MGP +E L GR+ LEI
Sbjct: 258 LKAFDNQCQILLTTSDKSVTDSVMGPKHVVPVESGL--------------GRE-KGLEIL 302
Query: 333 ESF-----------RKKVVGKCGGLPLAAKTLGGLLRT--TTYDMWDDILDSKIWDLPRQ 379
F ++ +C G PL +G LLR + + L +K + R+
Sbjct: 303 SLFVNMKKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRK 362
Query: 380 SS------ILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLW 422
SS + + +S L +K + +I KD + K L LW
Sbjct: 363 SSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLW 411
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 545 LYDLLPKFKKLRLLSLQGYYIGELPIP-FEDLRLLRYLNLADTDIRSLPESSCS-LLNLE 602
++D L K+L L S Q +G LP+ F+ L L L+L + LP + L++L+
Sbjct: 59 VFDSLINLKELYLGSNQ---LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLK 115
Query: 603 ILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMPFG 642
L + C+ L +LP I RL +L HL + LK +P G
Sbjct: 116 ELFM-CCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHG 153
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 551 KFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCS 610
K+ L L L G + ELP ++L LR L+L+ + SLP S L+ + +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-N 303
Query: 611 SLIKLPSKIRRLINLCHLDIRGAILLKEM 639
+ LP + L NL L + G L K+
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 1031 GIHLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSLAEKGLPNTISHVTISYC 1090
G+H L A+E+ +I N K+ IP+ + + + +KK ++ + + +P ++++ I+ C
Sbjct: 24 GVHTLRAIENFYISN-NKISDIPEFVRGM--VMVKKAAAMANKELQTIPKSVANAIIAAC 80
Query: 1091 EKLDALPNG 1099
+++ L NG
Sbjct: 81 DEV--LNNG 87
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 79/179 (44%), Gaps = 40/179 (22%)
Query: 952 FPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIEN 1011
P YL + E ++L+SLP + D + L LY+G L+ + G + L SL N
Sbjct: 26 IPAQTTYLDL-ETNSLKSLPNGVFDELTSLTQLYLGG-NKLQSLPNGVF-NKLTSLTYLN 82
Query: 1012 LTLESLKIRDCPQLTCLSSGI-HLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSL 1070
L+ QL L +G+ L L++L + N +L+S+P G+ L
Sbjct: 83 LSTN--------QLQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVFD----------KL 123
Query: 1071 VSLAEKGLPNTISHVTISYCEKLDALPNGM-HKLQSLQYLKIKE------CPSILSFSE 1122
L + L Y +L ++P+G+ +L SLQY+ + + CP I SE
Sbjct: 124 TQLKDLRL----------YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSE 172
>pdb|3V5C|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|B Chain B, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|C Chain C, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5C|D Chain D, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
pdb|3V5F|A Chain A, Crystal Structure Of The Mutant E234a Of Galacturonate
Dehydratase From Geobacillus Sp. Complexed With Mg
Length = 392
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 416 KELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQ 475
+++ F + G R + N ++ G C D+ +I +TG+GSS +H + A+
Sbjct: 15 EKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSS---IH-MTPEWAE 70
Query: 476 LVSGETIFRLEEDNSSSRRFERVRHSSYACGELDGRNKFKVFYEI---EHLRTFLPLHKT 532
V G + L +D R R++ Y + G+ + K Y++ HL T L
Sbjct: 71 DVIGRRLLDLFDDRGRLREAYRLQ-LEYPVLDWLGQRQGKPVYDLVSGAHLETGASL--- 126
Query: 533 DYIITCYITSMVLYDL 548
++ CY TS+ DL
Sbjct: 127 --VVPCYDTSLYFDDL 140
>pdb|3P3B|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3P3B|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Tartrate
pdb|3QPE|A Chain A, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|B Chain B, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|C Chain C, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3QPE|D Chain D, Crystal Structure Of Galacturonate Dehydratase From
Geobacillus Sp. Complexed With D-Galacturonate And
5-Keto-4-Deoxy-D-Galacturonate
pdb|3VCC|A Chain A, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
pdb|3VCC|B Chain B, Crystal Structure Of D-Galacturonate Dehydratase From
Geobacillus Sp. Complexed With Mg
Length = 392
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 416 KELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQ 475
+++ F + G R + N ++ G C D+ +I +TG+GSS +H + A+
Sbjct: 15 EKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSS---IH-MTPEWAE 70
Query: 476 LVSGETIFRLEEDNSSSRRFERVRHSSYACGELDGRNKFKVFYEI---EHLRTFLPLHKT 532
V G + L +D R R++ Y + G+ + K Y++ HL T L
Sbjct: 71 DVIGRRLLDLFDDRGRLREAYRLQ-LEYPVLDWLGQRQGKPVYDLVSGAHLETGASL--- 126
Query: 533 DYIITCYITSMVLYDL 548
++ CY TS+ DL
Sbjct: 127 --VVPCYDTSLYFDDL 140
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 390 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 447
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 448 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 474
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 386 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 443
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 444 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 470
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 31.2 bits (69), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 386 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 443
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 444 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 470
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 31.2 bits (69), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 410 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 467
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 468 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 494
>pdb|3N8Y|B Chain B, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
Length = 553
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 379 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 436
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 437 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 463
>pdb|3N8W|B Chain B, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
Length = 553
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 379 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 436
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 437 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 463
>pdb|1HT5|A Chain A, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT5|B Chain B, The 2.75 Angstrom Resolution Model Of Ovine Cox-1
Complexed With Methyl Ester Flurbiprofen
pdb|1HT8|A Chain A, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
pdb|1HT8|B Chain B, The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed
With Alclofenac
Length = 551
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 378 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 435
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 436 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 462
>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
Prostaglandin H2 Synthase-1
Length = 554
Score = 31.2 bits (69), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 378 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 435
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 436 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 462
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 410 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 467
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 468 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 494
>pdb|1DIY|A Chain A, Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Active Site Of Pghs-1
pdb|1Q4G|A Chain A, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|1Q4G|B Chain B, 2.0 Angstrom Crystal Structure Of Ovine Prostaglandin H2
Synthase-1, In Complex With
Alpha-Methyl-4-Biphenylacetic Acid
pdb|2AYL|A Chain A, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|2AYL|B Chain B, 2.0 Angstrom Crystal Structure Of Manganese Protoporphyrin
Ix- Reconstituted Ovine Prostaglandin H2 Synthase-1
Complexed With Flurbiprofen
pdb|3KK6|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3KK6|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Celecoxib
pdb|3N8V|A Chain A, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8V|B Chain B, Crystal Structure Of Unoccupied Cyclooxygenase-1
pdb|3N8W|A Chain A, Crystal Structure Of R120qNATIVE CYCLOOXYGENASE-1
Heterodimer Mutant In Complex With Flurbiprofen
pdb|3N8X|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8X|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Nimesulide
pdb|3N8Y|A Chain A, Structure Of Aspirin Acetylated Cyclooxygenase-1 In
Complex With Diclofenac
pdb|3N8Z|A Chain A, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
pdb|3N8Z|B Chain B, Crystal Structure Of Cyclooxygenase-1 In Complex With
Flurbiprofen
Length = 553
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 379 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 436
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 437 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 463
>pdb|1EBV|A Chain A, Ovine Pghs-1 Complexed With Salicyl Hydroxamic Acid
Length = 551
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 433 NNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETIFRLEEDNSSS 492
N L D G + D SR R G G + H ++H ++ + RL+ N
Sbjct: 378 NTSMLVDYGVEALVDAFSRQPAGRIGGGRN--IDHHILHVAVDVIKESRVLRLQPFNEYR 435
Query: 493 RRFERVRHSSYACGELDGRNKFKVFYEIEHL 523
+RF ++S+ EL G + E+E L
Sbjct: 436 KRFGMKPYTSFQ--ELTGEKEMAA--ELEEL 462
>pdb|3N4F|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3N4F|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
pdb|3OPS|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|C Chain C, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
pdb|3OPS|D Chain D, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING PROTEIN From Geobacillus Sp. Y412mc10
Complexed With MagnesiumTARTRATE
Length = 392
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 19/139 (13%)
Query: 416 KELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHAL-- 473
+++ F + G R + N ++ G C D+ +I +TG+GSS +H
Sbjct: 15 EKIEFAKLTGERARSAGANGRIGVHGKSCTVDIARITIDGQTGYGSS-------IHXTPE 67
Query: 474 -AQLVSGETIFRLEEDNSSSRRFERVRHSSYACGELDGRNKFKVFYEI---EHLRTFLPL 529
A+ V G + L +D R R++ Y + G+ + K Y++ HL T L
Sbjct: 68 WAEDVIGRRLLDLFDDRGRLREAYRLQ-LEYPVLDWLGQRQGKPVYDLVSGAHLETGASL 126
Query: 530 HKTDYIITCYITSMVLYDL 548
++ CY TS+ DL
Sbjct: 127 -----VVPCYDTSLYFDDL 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,758,576
Number of Sequences: 62578
Number of extensions: 1443069
Number of successful extensions: 3541
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 3493
Number of HSP's gapped (non-prelim): 68
length of query: 1277
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1167
effective length of database: 8,089,757
effective search space: 9440746419
effective search space used: 9440746419
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)