Query 000803
Match_columns 1277
No_of_seqs 720 out of 5170
Neff 10.2
Searched_HMMs 46136
Date Mon Apr 1 23:57:00 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.4E-84 1.4E-88 785.2 43.2 629 3-659 2-677 (889)
2 PLN03210 Resistant to P. syrin 100.0 2.3E-62 4.9E-67 636.0 53.1 475 141-654 183-688 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-41 2.7E-46 380.0 16.6 276 147-431 1-285 (287)
4 PLN00113 leucine-rich repeat r 100.0 1.3E-34 2.8E-39 379.9 22.4 511 549-1243 89-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 1.9E-33 4.2E-38 368.8 22.5 507 553-1243 69-584 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 2E-28 4.4E-33 253.3 -13.1 262 553-877 45-308 (565)
7 KOG0618 Serine/threonine phosp 99.9 6.3E-25 1.4E-29 251.5 -3.4 459 549-1269 41-510 (1081)
8 PLN03210 Resistant to P. syrin 99.9 1.4E-21 3.1E-26 255.2 23.5 106 1083-1199 805-910 (1153)
9 KOG4194 Membrane glycoprotein 99.8 2.7E-22 5.8E-27 217.6 3.3 263 954-1256 197-464 (873)
10 KOG0444 Cytoskeletal regulator 99.8 6.4E-23 1.4E-27 223.3 -3.9 184 978-1224 196-379 (1255)
11 KOG0472 Leucine-rich repeat pr 99.8 6.8E-24 1.5E-28 220.0 -11.0 238 549-803 64-315 (565)
12 KOG0618 Serine/threonine phosp 99.8 3.7E-22 8E-27 229.1 -4.5 106 549-660 64-169 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 1.9E-22 4E-27 219.7 -7.8 108 552-660 6-116 (1255)
14 KOG4194 Membrane glycoprotein 99.8 1.3E-20 2.9E-25 204.6 2.7 339 556-993 81-430 (873)
15 KOG4237 Extracellular matrix p 99.6 2.8E-17 6.1E-22 171.3 -5.1 123 554-677 68-194 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 1.3E-13 2.9E-18 166.0 13.7 79 553-641 201-279 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 2.9E-13 6.3E-18 163.1 14.8 255 738-1116 203-457 (788)
18 PRK04841 transcriptional regul 99.4 6E-11 1.3E-15 155.8 26.1 292 141-478 13-332 (903)
19 KOG4658 Apoptotic ATPase [Sign 99.3 8.3E-13 1.8E-17 163.1 5.2 300 551-876 543-856 (889)
20 PRK15370 E3 ubiquitin-protein 99.3 4.5E-12 9.8E-17 154.3 10.3 180 1037-1242 242-427 (754)
21 KOG0617 Ras suppressor protein 99.3 8.5E-14 1.8E-18 128.2 -4.8 127 549-677 52-179 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 1.8E-11 3.9E-16 149.1 12.3 94 553-656 178-271 (754)
23 PRK00411 cdc6 cell division co 99.2 1.8E-09 3.9E-14 126.4 27.4 299 140-456 28-357 (394)
24 KOG0617 Ras suppressor protein 99.2 9.8E-13 2.1E-17 121.3 -1.2 108 551-659 31-139 (264)
25 KOG4237 Extracellular matrix p 99.2 2.9E-13 6.3E-18 141.8 -6.8 286 952-1256 65-371 (498)
26 TIGR03015 pepcterm_ATPase puta 99.2 3.5E-09 7.6E-14 116.9 22.4 182 169-357 43-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.1 3.5E-08 7.5E-13 114.3 27.8 302 141-457 14-350 (365)
28 PF01637 Arch_ATPase: Archaeal 99.0 1.5E-09 3.4E-14 117.4 12.2 193 144-352 1-233 (234)
29 COG2909 MalT ATP-dependent tra 99.0 2.6E-08 5.6E-13 116.5 21.5 293 142-478 19-338 (894)
30 PRK00080 ruvB Holliday junctio 99.0 1.1E-08 2.3E-13 115.5 16.6 277 141-458 24-311 (328)
31 TIGR00635 ruvB Holliday juncti 98.9 3E-08 6.4E-13 111.5 18.9 275 142-458 4-290 (305)
32 PF05729 NACHT: NACHT domain 98.9 6.9E-09 1.5E-13 105.3 10.7 146 170-320 1-163 (166)
33 PTZ00112 origin recognition co 98.8 5.8E-07 1.3E-11 106.1 22.7 251 141-402 754-1027(1164)
34 PRK15386 type III secretion pr 98.7 4.5E-08 9.7E-13 108.2 9.6 70 1035-1112 51-120 (426)
35 COG3899 Predicted ATPase [Gene 98.7 4.8E-07 1E-11 113.4 19.6 311 144-477 2-385 (849)
36 PRK06893 DNA replication initi 98.6 6.2E-07 1.3E-11 95.1 13.8 152 170-354 40-204 (229)
37 cd00116 LRR_RI Leucine-rich re 98.6 7.8E-09 1.7E-13 117.9 -1.5 84 551-634 21-119 (319)
38 PF14580 LRR_9: Leucine-rich r 98.5 2.9E-08 6.2E-13 98.0 2.3 123 551-677 17-146 (175)
39 cd00116 LRR_RI Leucine-rich re 98.5 4.5E-08 9.8E-13 111.6 1.8 113 545-659 43-177 (319)
40 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3E-12 110.7 5.5 107 550-658 113-220 (394)
41 PF13401 AAA_22: AAA domain; P 98.5 6.6E-07 1.4E-11 86.4 9.1 119 169-289 4-125 (131)
42 PRK13342 recombination factor 98.4 2.4E-06 5.1E-11 99.5 15.3 176 143-354 13-197 (413)
43 KOG4341 F-box protein containi 98.4 5.6E-09 1.2E-13 111.3 -6.2 162 1059-1223 270-442 (483)
44 PTZ00202 tuzin; Provisional 98.4 4E-06 8.6E-11 91.9 14.9 170 135-320 255-434 (550)
45 COG2256 MGS1 ATPase related to 98.4 3.7E-06 8.1E-11 90.5 14.3 174 139-349 27-208 (436)
46 KOG0532 Leucine-rich repeat (L 98.4 3.5E-08 7.7E-13 109.2 -2.0 103 556-661 78-180 (722)
47 PRK05564 DNA polymerase III su 98.4 9E-06 2E-10 91.2 17.2 180 143-352 5-189 (313)
48 PF14580 LRR_9: Leucine-rich r 98.4 3.3E-07 7E-12 90.6 4.6 106 551-659 40-152 (175)
49 PF05496 RuvB_N: Holliday junc 98.4 8.5E-06 1.9E-10 82.0 14.3 180 142-356 24-224 (233)
50 PRK15386 type III secretion pr 98.4 8.1E-07 1.7E-11 98.4 7.7 67 1014-1089 54-121 (426)
51 TIGR02903 spore_lon_C ATP-depe 98.3 5.6E-05 1.2E-09 91.8 23.8 204 143-356 155-398 (615)
52 PF13173 AAA_14: AAA domain 98.3 1.1E-06 2.3E-11 83.8 7.3 119 170-312 3-127 (128)
53 COG3903 Predicted ATPase [Gene 98.3 1.6E-06 3.5E-11 94.1 9.3 290 168-478 13-314 (414)
54 PRK04195 replication factor C 98.3 5.3E-05 1.2E-09 90.2 22.8 246 142-430 14-271 (482)
55 PRK14961 DNA polymerase III su 98.3 1.5E-05 3.3E-10 91.0 17.2 191 142-350 16-217 (363)
56 PF13191 AAA_16: AAA ATPase do 98.3 1.1E-06 2.5E-11 90.8 7.5 51 143-196 1-51 (185)
57 PRK07003 DNA polymerase III su 98.3 2.9E-05 6.2E-10 92.1 19.2 183 142-354 16-222 (830)
58 PRK14949 DNA polymerase III su 98.3 1.5E-05 3.2E-10 96.5 16.4 184 142-352 16-219 (944)
59 PRK12402 replication factor C 98.3 1.7E-05 3.6E-10 91.0 16.4 197 142-351 15-224 (337)
60 PRK14963 DNA polymerase III su 98.3 2.8E-06 6E-11 99.8 10.0 194 142-350 14-214 (504)
61 TIGR03420 DnaA_homol_Hda DnaA 98.3 4.8E-06 1E-10 89.1 10.8 168 148-354 23-202 (226)
62 PF13855 LRR_8: Leucine rich r 98.2 1.2E-06 2.6E-11 70.7 4.3 56 554-609 2-59 (61)
63 PRK14960 DNA polymerase III su 98.2 2E-05 4.4E-10 92.3 15.6 192 142-351 15-217 (702)
64 cd00009 AAA The AAA+ (ATPases 98.2 1E-05 2.2E-10 80.3 11.4 125 145-291 1-131 (151)
65 PLN03150 hypothetical protein; 98.2 1.6E-06 3.4E-11 106.3 6.5 104 554-657 419-525 (623)
66 KOG4341 F-box protein containi 98.2 6.4E-08 1.4E-12 103.5 -5.0 109 762-879 139-255 (483)
67 KOG0532 Leucine-rich repeat (L 98.2 2.8E-07 6.1E-12 102.3 -0.5 114 554-671 144-257 (722)
68 KOG1259 Nischarin, modulator o 98.2 3.7E-07 8.1E-12 92.8 0.4 107 549-659 303-411 (490)
69 KOG1259 Nischarin, modulator o 98.2 2.4E-07 5.2E-12 94.2 -1.3 124 549-676 280-404 (490)
70 KOG3207 Beta-tubulin folding c 98.2 3.8E-07 8.2E-12 98.3 0.1 66 733-800 219-286 (505)
71 COG1474 CDC6 Cdc6-related prot 98.2 9.8E-05 2.1E-09 83.1 18.9 206 143-353 18-238 (366)
72 PRK12323 DNA polymerase III su 98.1 3.6E-05 7.9E-10 90.0 15.4 197 142-352 16-224 (700)
73 PLN03025 replication factor C 98.1 3.8E-05 8.2E-10 86.4 15.3 181 142-349 13-196 (319)
74 PRK07471 DNA polymerase III su 98.1 1.5E-05 3.3E-10 89.7 12.1 199 141-353 18-238 (365)
75 PRK06645 DNA polymerase III su 98.1 5.1E-05 1.1E-09 88.8 16.7 194 142-350 21-226 (507)
76 PRK14962 DNA polymerase III su 98.1 6.2E-05 1.4E-09 87.8 17.2 185 142-357 14-223 (472)
77 PRK00440 rfc replication facto 98.1 4.9E-05 1.1E-09 86.4 16.2 180 142-350 17-200 (319)
78 PRK14957 DNA polymerase III su 98.1 4.6E-05 1E-09 89.7 16.0 186 142-354 16-222 (546)
79 PRK09112 DNA polymerase III su 98.1 8E-05 1.7E-09 83.5 17.3 199 140-353 21-240 (351)
80 PRK08084 DNA replication initi 98.1 3E-05 6.5E-10 82.6 13.3 153 169-354 45-210 (235)
81 PRK08727 hypothetical protein; 98.1 3.9E-05 8.4E-10 81.6 14.1 148 170-350 42-201 (233)
82 cd01128 rho_factor Transcripti 98.1 4.7E-06 1E-10 88.2 6.9 90 169-261 16-114 (249)
83 PRK07940 DNA polymerase III su 98.1 7.1E-05 1.5E-09 85.1 16.6 181 143-353 6-213 (394)
84 PRK09087 hypothetical protein; 98.1 4.1E-05 8.9E-10 80.5 13.2 140 170-353 45-195 (226)
85 PRK08691 DNA polymerase III su 98.1 3.4E-05 7.4E-10 91.5 13.7 180 142-351 16-218 (709)
86 PRK14956 DNA polymerase III su 98.1 6.2E-05 1.3E-09 86.0 15.2 190 142-349 18-218 (484)
87 TIGR02397 dnaX_nterm DNA polym 98.1 8.5E-05 1.8E-09 85.8 16.7 184 142-353 14-218 (355)
88 PRK07994 DNA polymerase III su 98.1 6.5E-05 1.4E-09 89.8 15.7 194 142-353 16-220 (647)
89 PF13855 LRR_8: Leucine rich r 98.0 4.8E-06 1E-10 67.2 4.2 58 576-634 1-60 (61)
90 PRK09376 rho transcription ter 98.0 9.4E-06 2E-10 89.0 7.8 90 169-261 169-267 (416)
91 TIGR00678 holB DNA polymerase 98.0 0.00011 2.5E-09 75.6 15.4 91 249-349 95-187 (188)
92 PF00308 Bac_DnaA: Bacterial d 98.0 6.3E-05 1.4E-09 78.9 13.4 187 142-353 9-208 (219)
93 PRK08903 DnaA regulatory inact 98.0 4.8E-05 1E-09 81.2 12.7 152 169-357 42-203 (227)
94 PRK05896 DNA polymerase III su 98.0 3.6E-05 7.8E-10 90.5 12.3 196 142-355 16-223 (605)
95 COG4886 Leucine-rich repeat (L 98.0 4.6E-06 9.9E-11 97.9 5.0 104 556-661 96-200 (394)
96 PRK14951 DNA polymerase III su 98.0 9.9E-05 2.1E-09 88.1 15.8 197 142-351 16-223 (618)
97 KOG3207 Beta-tubulin folding c 98.0 2.7E-06 5.8E-11 91.9 2.4 133 1101-1241 169-312 (505)
98 PRK13341 recombination factor 98.0 3.7E-05 8E-10 94.1 12.3 172 142-348 28-212 (725)
99 PRK14964 DNA polymerase III su 98.0 0.0001 2.2E-09 85.4 15.2 183 142-350 13-214 (491)
100 PRK05642 DNA replication initi 98.0 9.4E-05 2E-09 78.6 13.7 153 170-355 46-210 (234)
101 PRK14958 DNA polymerase III su 98.0 0.0001 2.2E-09 87.1 15.0 180 142-351 16-218 (509)
102 PRK14955 DNA polymerase III su 97.9 6.9E-05 1.5E-09 86.7 13.0 198 142-350 16-225 (397)
103 PF14516 AAA_35: AAA-like doma 97.9 0.0024 5.2E-08 71.9 24.9 203 139-360 8-246 (331)
104 PRK14969 DNA polymerase III su 97.9 0.00022 4.8E-09 85.0 16.1 182 142-353 16-221 (527)
105 TIGR01242 26Sp45 26S proteasom 97.9 0.00019 4E-09 82.5 14.9 180 141-347 121-328 (364)
106 PRK09111 DNA polymerase III su 97.9 0.00021 4.5E-09 85.8 15.6 197 142-353 24-233 (598)
107 KOG2028 ATPase related to the 97.9 0.00036 7.8E-09 73.7 15.0 158 167-348 160-331 (554)
108 PLN03150 hypothetical protein; 97.9 1.8E-05 3.9E-10 97.1 6.5 96 545-640 434-532 (623)
109 PRK14087 dnaA chromosomal repl 97.8 0.0003 6.5E-09 82.2 15.6 168 170-355 142-321 (450)
110 PRK07133 DNA polymerase III su 97.8 0.00043 9.4E-09 83.4 16.9 193 142-353 18-220 (725)
111 TIGR00767 rho transcription te 97.8 7.1E-05 1.5E-09 82.9 9.5 90 169-261 168-266 (415)
112 PF12799 LRR_4: Leucine Rich r 97.8 1.4E-05 3.1E-10 58.6 2.6 39 577-616 2-40 (44)
113 PRK14950 DNA polymerase III su 97.8 0.00019 4.1E-09 87.3 13.8 195 142-353 16-221 (585)
114 KOG2543 Origin recognition com 97.8 0.0011 2.5E-08 71.2 17.5 166 141-318 5-191 (438)
115 KOG0531 Protein phosphatase 1, 97.8 4.4E-06 9.4E-11 98.0 -0.4 109 549-661 91-200 (414)
116 PRK14970 DNA polymerase III su 97.8 0.00055 1.2E-08 79.0 16.9 179 142-349 17-205 (367)
117 KOG2227 Pre-initiation complex 97.8 0.00088 1.9E-08 74.0 17.0 214 140-357 148-376 (529)
118 PRK14959 DNA polymerase III su 97.8 0.00039 8.3E-09 82.5 15.5 197 142-357 16-225 (624)
119 PRK07764 DNA polymerase III su 97.8 0.00044 9.6E-09 85.9 16.5 191 142-350 15-218 (824)
120 KOG1909 Ran GTPase-activating 97.8 1.3E-06 2.8E-11 91.8 -4.7 203 548-794 25-251 (382)
121 PRK14954 DNA polymerase III su 97.8 0.00045 9.9E-09 83.0 16.0 201 142-353 16-229 (620)
122 PF05621 TniB: Bacterial TniB 97.8 0.00057 1.2E-08 72.7 14.8 196 150-349 45-257 (302)
123 PF12799 LRR_4: Leucine Rich r 97.8 3E-05 6.6E-10 56.8 3.7 39 554-592 2-40 (44)
124 COG2255 RuvB Holliday junction 97.7 0.0011 2.4E-08 68.4 15.8 192 142-354 26-224 (332)
125 PRK14952 DNA polymerase III su 97.7 0.00066 1.4E-08 81.0 16.2 198 142-357 13-224 (584)
126 PRK08451 DNA polymerase III su 97.7 0.0012 2.7E-08 77.4 17.0 181 142-353 14-218 (535)
127 PRK14953 DNA polymerase III su 97.6 0.0014 3E-08 77.2 17.3 185 142-353 16-220 (486)
128 PHA02544 44 clamp loader, smal 97.6 0.00052 1.1E-08 77.7 13.5 148 142-318 21-171 (316)
129 PRK14948 DNA polymerase III su 97.6 0.0011 2.4E-08 80.3 16.5 195 142-352 16-221 (620)
130 PRK06305 DNA polymerase III su 97.6 0.001 2.2E-08 77.8 15.8 181 142-353 17-223 (451)
131 TIGR00362 DnaA chromosomal rep 97.6 0.0021 4.6E-08 75.1 18.5 161 169-351 136-308 (405)
132 PRK06620 hypothetical protein; 97.6 0.00088 1.9E-08 69.9 13.6 136 170-351 45-187 (214)
133 TIGR02881 spore_V_K stage V sp 97.6 0.00093 2E-08 72.8 14.3 159 143-321 7-192 (261)
134 TIGR02639 ClpA ATP-dependent C 97.6 0.00038 8.3E-09 87.3 12.7 159 142-320 182-358 (731)
135 PRK14088 dnaA chromosomal repl 97.6 0.0013 2.8E-08 76.8 16.3 160 169-350 130-302 (440)
136 PRK14971 DNA polymerase III su 97.6 0.0017 3.7E-08 78.7 16.9 178 142-350 17-219 (614)
137 TIGR03345 VI_ClpV1 type VI sec 97.6 0.00051 1.1E-08 86.7 12.9 185 142-347 187-390 (852)
138 PRK07399 DNA polymerase III su 97.5 0.003 6.5E-08 70.0 16.8 196 143-353 5-221 (314)
139 CHL00095 clpC Clp protease ATP 97.5 0.00038 8.2E-09 88.5 11.1 157 143-319 180-353 (821)
140 CHL00181 cbbX CbbX; Provisiona 97.5 0.0025 5.5E-08 69.7 15.8 161 143-321 24-210 (287)
141 PRK11331 5-methylcytosine-spec 97.5 0.00033 7.1E-09 79.2 9.0 110 142-265 175-287 (459)
142 PRK06647 DNA polymerase III su 97.5 0.0025 5.4E-08 76.3 16.8 192 142-352 16-219 (563)
143 PRK03992 proteasome-activating 97.5 0.0014 3E-08 75.5 14.3 157 142-321 131-316 (389)
144 COG3267 ExeA Type II secretory 97.5 0.0062 1.3E-07 62.4 16.5 179 168-355 50-247 (269)
145 KOG0989 Replication factor C, 97.5 0.00078 1.7E-08 70.3 10.3 183 142-347 36-224 (346)
146 TIGR02880 cbbX_cfxQ probable R 97.5 0.0025 5.4E-08 69.9 15.1 161 143-321 23-209 (284)
147 PRK05707 DNA polymerase III su 97.4 0.0025 5.4E-08 71.0 15.2 158 169-353 22-203 (328)
148 PRK00149 dnaA chromosomal repl 97.4 0.0027 5.9E-08 75.1 16.3 160 169-350 148-319 (450)
149 PRK14965 DNA polymerase III su 97.4 0.0024 5.1E-08 77.4 15.2 195 142-354 16-222 (576)
150 PF05673 DUF815: Protein of un 97.4 0.0031 6.8E-08 64.9 13.6 127 139-294 24-155 (249)
151 KOG4579 Leucine-rich repeat (L 97.3 1.2E-05 2.5E-10 72.7 -3.7 91 549-641 49-140 (177)
152 PRK12422 chromosomal replicati 97.3 0.005 1.1E-07 71.7 16.5 153 170-346 142-306 (445)
153 PRK05563 DNA polymerase III su 97.3 0.0054 1.2E-07 73.9 17.2 192 142-351 16-218 (559)
154 PF00004 AAA: ATPase family as 97.3 0.00056 1.2E-08 65.9 7.1 22 172-193 1-22 (132)
155 COG0593 DnaA ATPase involved i 97.3 0.0052 1.1E-07 69.0 15.3 166 168-353 112-290 (408)
156 PRK11034 clpA ATP-dependent Cl 97.3 0.0012 2.6E-08 81.5 11.2 158 142-320 186-362 (758)
157 PRK14086 dnaA chromosomal repl 97.3 0.0034 7.3E-08 74.3 14.2 159 170-350 315-485 (617)
158 KOG4579 Leucine-rich repeat (L 97.3 4.4E-05 9.5E-10 69.1 -1.1 102 554-657 28-133 (177)
159 KOG0531 Protein phosphatase 1, 97.2 5.7E-05 1.2E-09 88.6 -1.2 107 551-661 70-176 (414)
160 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0028 6.1E-08 80.9 13.5 159 142-320 173-349 (852)
161 KOG2120 SCF ubiquitin ligase, 97.2 4.8E-05 1E-09 78.1 -1.9 88 1081-1169 235-327 (419)
162 PRK06871 DNA polymerase III su 97.2 0.015 3.3E-07 64.2 17.2 178 151-350 11-200 (325)
163 PRK08769 DNA polymerase III su 97.1 0.017 3.6E-07 63.8 17.1 95 249-353 112-208 (319)
164 TIGR00602 rad24 checkpoint pro 97.1 0.0024 5.2E-08 76.7 11.2 52 141-193 83-134 (637)
165 COG1373 Predicted ATPase (AAA+ 97.1 0.0065 1.4E-07 70.0 13.6 147 171-352 39-191 (398)
166 PRK06090 DNA polymerase III su 97.0 0.02 4.2E-07 63.2 16.5 153 169-353 25-201 (319)
167 PRK10865 protein disaggregatio 97.0 0.0048 1E-07 78.4 13.5 158 142-320 178-354 (857)
168 smart00382 AAA ATPases associa 97.0 0.0026 5.6E-08 62.3 9.1 88 170-263 3-91 (148)
169 KOG1859 Leucine-rich repeat pr 97.0 3.1E-05 6.7E-10 88.9 -5.6 110 545-658 179-290 (1096)
170 PTZ00361 26 proteosome regulat 97.0 0.0043 9.4E-08 71.4 11.4 158 142-321 183-368 (438)
171 PRK10787 DNA-binding ATP-depen 97.0 0.039 8.5E-07 69.1 20.3 166 141-320 321-506 (784)
172 PRK10536 hypothetical protein; 97.0 0.0052 1.1E-07 64.2 10.6 130 143-289 56-212 (262)
173 PRK08116 hypothetical protein; 97.0 0.002 4.4E-08 69.8 7.9 103 170-289 115-220 (268)
174 TIGR00763 lon ATP-dependent pr 96.9 0.04 8.7E-07 69.8 20.5 52 142-193 320-371 (775)
175 PF13177 DNA_pol3_delta2: DNA 96.9 0.0092 2E-07 59.3 11.7 122 146-291 1-143 (162)
176 PTZ00454 26S protease regulato 96.9 0.0076 1.6E-07 69.0 12.5 179 142-347 145-351 (398)
177 KOG2120 SCF ubiquitin ligase, 96.9 6.7E-05 1.5E-09 77.0 -3.7 150 1095-1249 225-388 (419)
178 KOG3665 ZYG-1-like serine/thre 96.9 0.00074 1.6E-08 82.5 4.1 109 517-634 144-261 (699)
179 PRK08058 DNA polymerase III su 96.9 0.02 4.3E-07 64.5 15.2 150 143-318 6-180 (329)
180 PRK07993 DNA polymerase III su 96.9 0.028 6.2E-07 62.9 16.2 179 151-351 11-202 (334)
181 PRK08118 topology modulation p 96.8 0.00056 1.2E-08 68.3 2.2 35 171-206 3-37 (167)
182 TIGR02639 ClpA ATP-dependent C 96.7 0.038 8.3E-07 69.6 17.8 120 142-275 454-578 (731)
183 KOG1909 Ran GTPase-activating 96.7 0.00029 6.4E-09 74.5 -0.7 64 546-609 51-130 (382)
184 TIGR03689 pup_AAA proteasome A 96.7 0.021 4.6E-07 66.9 14.1 169 142-320 182-378 (512)
185 PF04665 Pox_A32: Poxvirus A32 96.7 0.0025 5.4E-08 66.3 5.8 36 170-209 14-49 (241)
186 KOG1859 Leucine-rich repeat pr 96.7 5E-05 1.1E-09 87.2 -7.2 104 553-661 164-268 (1096)
187 COG0466 Lon ATP-dependent Lon 96.7 0.025 5.4E-07 66.5 14.2 167 141-321 322-509 (782)
188 PRK12608 transcription termina 96.7 0.012 2.6E-07 65.3 11.0 102 151-260 120-230 (380)
189 CHL00176 ftsH cell division pr 96.6 0.027 5.9E-07 68.5 15.0 178 142-346 183-387 (638)
190 PF01695 IstB_IS21: IstB-like 96.6 0.002 4.3E-08 65.0 4.5 100 170-289 48-149 (178)
191 PRK12727 flagellar biosynthesi 96.6 0.045 9.8E-07 63.5 15.7 88 169-261 350-439 (559)
192 TIGR02640 gas_vesic_GvpN gas v 96.6 0.03 6.4E-07 60.9 13.8 21 171-191 23-43 (262)
193 PRK08181 transposase; Validate 96.6 0.0043 9.2E-08 66.7 6.8 101 170-290 107-209 (269)
194 KOG3665 ZYG-1-like serine/thre 96.6 0.0012 2.6E-08 80.8 2.7 36 620-657 170-205 (699)
195 COG1222 RPT1 ATP-dependent 26S 96.6 0.046 1E-06 58.8 14.0 201 143-371 152-391 (406)
196 KOG2982 Uncharacterized conser 96.6 0.00071 1.5E-08 69.8 0.7 81 552-633 70-156 (418)
197 KOG1644 U2-associated snRNP A' 96.6 0.0028 6E-08 62.1 4.6 103 553-658 42-151 (233)
198 COG2812 DnaX DNA polymerase II 96.6 0.011 2.5E-07 68.5 10.4 188 143-348 17-215 (515)
199 KOG1514 Origin recognition com 96.5 0.082 1.8E-06 62.1 16.8 205 142-357 396-625 (767)
200 PRK07952 DNA replication prote 96.5 0.01 2.2E-07 62.8 8.9 103 169-289 99-204 (244)
201 TIGR01241 FtsH_fam ATP-depende 96.5 0.043 9.3E-07 66.0 15.4 179 142-347 55-260 (495)
202 KOG0741 AAA+-type ATPase [Post 96.5 0.031 6.7E-07 62.8 12.7 148 167-343 536-704 (744)
203 PRK10865 protein disaggregatio 96.5 0.031 6.7E-07 71.2 14.7 138 142-289 568-720 (857)
204 TIGR02902 spore_lonB ATP-depen 96.5 0.012 2.6E-07 70.6 10.4 44 143-192 66-109 (531)
205 PRK06964 DNA polymerase III su 96.5 0.05 1.1E-06 60.7 14.4 93 249-353 131-225 (342)
206 PRK07261 topology modulation p 96.4 0.0065 1.4E-07 61.1 6.7 23 171-193 2-24 (171)
207 PRK08939 primosomal protein Dn 96.4 0.011 2.4E-07 65.2 9.1 122 146-289 135-260 (306)
208 TIGR03346 chaperone_ClpB ATP-d 96.4 0.015 3.3E-07 74.3 11.5 137 142-289 565-717 (852)
209 PF02562 PhoH: PhoH-like prote 96.4 0.0074 1.6E-07 61.4 6.8 129 147-289 5-155 (205)
210 TIGR03345 VI_ClpV1 type VI sec 96.4 0.012 2.6E-07 74.6 10.0 137 142-289 566-718 (852)
211 smart00763 AAA_PrkA PrkA AAA d 96.4 0.0048 1E-07 68.0 5.6 64 143-206 52-118 (361)
212 PRK13531 regulatory ATPase Rav 96.4 0.013 2.7E-07 67.3 9.1 43 142-192 20-62 (498)
213 PRK06526 transposase; Provisio 96.3 0.0047 1E-07 66.1 5.3 24 170-193 99-122 (254)
214 COG0542 clpA ATP-binding subun 96.3 0.0091 2E-07 72.2 8.1 122 142-276 491-619 (786)
215 PRK12377 putative replication 96.3 0.011 2.3E-07 62.8 7.9 101 170-289 102-205 (248)
216 KOG2035 Replication factor C, 96.3 0.025 5.3E-07 58.4 9.8 203 144-371 15-257 (351)
217 PF07693 KAP_NTPase: KAP famil 96.3 0.057 1.2E-06 61.5 14.4 46 148-196 2-47 (325)
218 PF10443 RNA12: RNA12 protein; 96.3 0.15 3.2E-06 57.3 16.6 206 147-370 1-297 (431)
219 COG0470 HolB ATPase involved i 96.2 0.026 5.6E-07 64.3 11.0 147 143-309 2-170 (325)
220 PRK06921 hypothetical protein; 96.2 0.014 3E-07 63.2 8.0 38 169-209 117-154 (266)
221 PRK09183 transposase/IS protei 96.2 0.012 2.7E-07 63.4 7.5 23 170-192 103-125 (259)
222 CHL00095 clpC Clp protease ATP 96.1 0.024 5.2E-07 72.3 11.1 136 142-289 509-661 (821)
223 KOG1947 Leucine rich repeat pr 96.1 0.00079 1.7E-08 81.9 -2.4 236 976-1247 185-444 (482)
224 KOG0991 Replication factor C, 96.1 0.011 2.4E-07 58.9 5.7 102 142-272 27-135 (333)
225 PRK04132 replication factor C 96.0 0.095 2.1E-06 65.2 14.9 154 177-351 574-729 (846)
226 CHL00195 ycf46 Ycf46; Provisio 96.0 0.061 1.3E-06 63.3 12.7 180 143-347 229-429 (489)
227 PRK11889 flhF flagellar biosyn 96.0 0.061 1.3E-06 59.9 11.7 89 168-261 240-331 (436)
228 PF00560 LRR_1: Leucine Rich R 96.0 0.0034 7.3E-08 38.1 1.1 21 577-597 1-21 (22)
229 PRK06835 DNA replication prote 95.9 0.0081 1.8E-07 66.8 4.7 102 170-289 184-288 (329)
230 PF13207 AAA_17: AAA domain; P 95.9 0.0057 1.2E-07 57.8 3.0 22 171-192 1-22 (121)
231 PRK04296 thymidine kinase; Pro 95.9 0.017 3.7E-07 59.3 6.6 114 170-292 3-118 (190)
232 TIGR03499 FlhF flagellar biosy 95.9 0.028 6E-07 61.7 8.5 87 168-259 193-281 (282)
233 COG2607 Predicted ATPase (AAA+ 95.8 0.033 7.1E-07 56.4 8.0 109 139-276 57-166 (287)
234 PF07728 AAA_5: AAA domain (dy 95.8 0.0045 9.8E-08 60.1 2.0 87 172-273 2-88 (139)
235 PRK06696 uridine kinase; Valid 95.8 0.011 2.5E-07 62.5 5.1 45 146-193 2-46 (223)
236 COG5238 RNA1 Ran GTPase-activa 95.8 0.0051 1.1E-07 62.8 2.2 84 551-634 28-131 (388)
237 KOG1969 DNA replication checkp 95.8 0.023 5.1E-07 66.5 7.7 77 167-263 324-400 (877)
238 PRK09361 radB DNA repair and r 95.8 0.034 7.3E-07 59.2 8.6 46 168-218 22-67 (225)
239 TIGR02237 recomb_radB DNA repa 95.8 0.029 6.3E-07 59.0 8.0 49 167-220 10-58 (209)
240 PF00158 Sigma54_activat: Sigm 95.8 0.038 8.2E-07 55.1 8.3 46 144-193 1-46 (168)
241 KOG2228 Origin recognition com 95.7 0.1 2.2E-06 55.8 11.3 172 143-320 25-219 (408)
242 PRK11034 clpA ATP-dependent Cl 95.7 0.043 9.3E-07 68.2 10.3 119 143-275 459-582 (758)
243 cd01393 recA_like RecA is a b 95.7 0.054 1.2E-06 57.8 10.0 92 168-260 18-124 (226)
244 PRK08699 DNA polymerase III su 95.7 0.091 2E-06 58.6 11.9 71 249-319 112-184 (325)
245 PF14532 Sigma54_activ_2: Sigm 95.7 0.011 2.3E-07 57.2 4.0 109 145-290 1-110 (138)
246 KOG0744 AAA+-type ATPase [Post 95.7 0.031 6.7E-07 58.9 7.3 82 169-260 177-260 (423)
247 KOG0735 AAA+-type ATPase [Post 95.7 0.091 2E-06 61.5 11.7 154 169-346 431-608 (952)
248 PRK12724 flagellar biosynthesi 95.6 0.051 1.1E-06 61.4 9.5 24 169-192 223-246 (432)
249 cd01123 Rad51_DMC1_radA Rad51_ 95.6 0.049 1.1E-06 58.5 9.3 52 168-219 18-71 (235)
250 PRK05800 cobU adenosylcobinami 95.6 0.017 3.8E-07 57.6 5.3 152 171-350 3-169 (170)
251 COG1484 DnaC DNA replication p 95.6 0.033 7E-07 59.8 7.6 80 170-268 106-185 (254)
252 cd01120 RecA-like_NTPases RecA 95.6 0.047 1E-06 54.8 8.6 40 171-214 1-40 (165)
253 COG1121 ZnuC ABC-type Mn/Zn tr 95.6 0.09 2E-06 55.1 10.5 122 170-293 31-202 (254)
254 KOG1947 Leucine rich repeat pr 95.6 0.0017 3.7E-08 78.9 -2.6 113 954-1071 188-309 (482)
255 cd01394 radB RadB. The archaea 95.5 0.046 1E-06 57.8 8.6 43 168-214 18-60 (218)
256 PF00448 SRP54: SRP54-type pro 95.5 0.045 9.8E-07 56.1 7.8 88 169-260 1-93 (196)
257 cd01133 F1-ATPase_beta F1 ATP 95.4 0.057 1.2E-06 57.6 8.7 87 170-259 70-172 (274)
258 PF13604 AAA_30: AAA domain; P 95.4 0.019 4.2E-07 59.1 4.9 104 170-287 19-128 (196)
259 PRK05541 adenylylsulfate kinas 95.4 0.021 4.5E-07 58.1 5.1 26 168-193 6-31 (176)
260 COG2884 FtsE Predicted ATPase 95.4 0.089 1.9E-06 51.4 8.8 120 169-296 28-203 (223)
261 COG0542 clpA ATP-binding subun 95.3 0.039 8.4E-07 67.0 7.8 159 143-320 171-346 (786)
262 cd00544 CobU Adenosylcobinamid 95.3 0.043 9.4E-07 54.6 6.9 148 172-348 2-167 (169)
263 KOG2739 Leucine-rich acidic nu 95.3 0.0091 2E-07 61.4 2.0 60 573-634 62-127 (260)
264 PRK14722 flhF flagellar biosyn 95.3 0.047 1E-06 61.3 7.9 89 169-261 137-226 (374)
265 PTZ00494 tuzin-like protein; P 95.3 0.23 4.9E-06 55.3 12.6 170 136-320 365-544 (664)
266 TIGR01243 CDC48 AAA family ATP 95.3 0.24 5.2E-06 62.8 15.1 179 142-347 453-657 (733)
267 PRK13695 putative NTPase; Prov 95.2 0.019 4.2E-07 58.2 4.3 23 171-193 2-24 (174)
268 PRK12723 flagellar biosynthesi 95.2 0.081 1.8E-06 60.1 9.6 92 168-262 173-266 (388)
269 PF08423 Rad51: Rad51; InterP 95.2 0.06 1.3E-06 58.0 8.2 56 170-226 39-96 (256)
270 COG0572 Udk Uridine kinase [Nu 95.2 0.027 5.9E-07 57.2 5.2 78 167-251 6-85 (218)
271 PRK15455 PrkA family serine pr 95.2 0.017 3.7E-07 67.1 4.1 49 143-191 77-125 (644)
272 KOG0733 Nuclear AAA ATPase (VC 95.2 0.36 7.7E-06 55.9 14.3 98 142-261 190-293 (802)
273 PF00485 PRK: Phosphoribulokin 95.2 0.063 1.4E-06 55.5 8.1 83 171-254 1-87 (194)
274 TIGR02238 recomb_DMC1 meiotic 95.2 0.076 1.6E-06 58.8 9.0 59 168-227 95-155 (313)
275 KOG1644 U2-associated snRNP A' 95.2 0.028 6E-07 55.4 4.8 103 555-661 21-127 (233)
276 PRK08233 hypothetical protein; 95.2 0.062 1.3E-06 55.0 7.8 25 169-193 3-27 (182)
277 KOG0731 AAA+-type ATPase conta 95.1 0.48 1E-05 57.4 15.8 182 143-350 312-521 (774)
278 TIGR01243 CDC48 AAA family ATP 95.1 0.14 3.1E-06 64.9 12.2 181 142-349 178-383 (733)
279 cd00983 recA RecA is a bacter 95.1 0.046 1E-06 60.1 6.8 85 167-260 53-143 (325)
280 COG1875 NYN ribonuclease and A 95.1 0.082 1.8E-06 57.1 8.2 134 144-289 226-387 (436)
281 PRK06067 flagellar accessory p 95.0 0.12 2.5E-06 55.4 9.8 87 167-260 23-130 (234)
282 PF00006 ATP-synt_ab: ATP synt 95.0 0.09 2E-06 54.5 8.3 82 170-259 16-114 (215)
283 COG1618 Predicted nucleotide k 95.0 0.023 5E-07 53.7 3.5 27 170-196 6-32 (179)
284 PRK05703 flhF flagellar biosyn 95.0 0.18 3.8E-06 58.7 11.5 88 169-261 221-310 (424)
285 PRK09270 nucleoside triphospha 94.9 0.11 2.5E-06 55.2 9.3 28 167-194 31-58 (229)
286 PRK14974 cell division protein 94.9 0.12 2.6E-06 57.6 9.6 90 168-262 139-234 (336)
287 PF13671 AAA_33: AAA domain; P 94.9 0.064 1.4E-06 52.3 6.7 21 171-191 1-21 (143)
288 KOG2123 Uncharacterized conser 94.9 0.0016 3.4E-08 66.6 -4.7 79 553-634 19-99 (388)
289 PF03215 Rad17: Rad17 cell cyc 94.8 0.18 3.9E-06 59.8 11.4 60 143-209 20-79 (519)
290 PRK09354 recA recombinase A; P 94.8 0.064 1.4E-06 59.5 7.1 85 167-260 58-148 (349)
291 cd03214 ABC_Iron-Siderophores_ 94.8 0.18 3.8E-06 51.4 10.0 118 170-293 26-161 (180)
292 PRK05439 pantothenate kinase; 94.8 0.13 2.9E-06 56.3 9.3 82 167-251 84-166 (311)
293 TIGR02012 tigrfam_recA protein 94.8 0.072 1.6E-06 58.6 7.2 85 167-260 53-143 (321)
294 cd03247 ABCC_cytochrome_bd The 94.7 0.15 3.3E-06 51.8 9.3 24 170-193 29-52 (178)
295 KOG0734 AAA+-type ATPase conta 94.7 0.18 4E-06 57.0 10.2 53 143-195 305-363 (752)
296 PRK07667 uridine kinase; Provi 94.7 0.04 8.6E-07 56.8 4.8 39 151-193 3-41 (193)
297 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.15 3.3E-06 49.5 8.6 103 170-293 27-130 (144)
298 cd02025 PanK Pantothenate kina 94.6 0.11 2.3E-06 54.7 8.0 23 171-193 1-23 (220)
299 KOG2982 Uncharacterized conser 94.6 0.021 4.6E-07 59.3 2.5 92 1181-1275 198-293 (418)
300 KOG0728 26S proteasome regulat 94.6 0.91 2E-05 46.2 13.7 203 143-369 147-385 (404)
301 cd03115 SRP The signal recogni 94.6 0.17 3.7E-06 51.2 9.1 23 171-193 2-24 (173)
302 COG4608 AppF ABC-type oligopep 94.6 0.15 3.2E-06 53.6 8.6 125 169-298 39-178 (268)
303 COG0563 Adk Adenylate kinase a 94.5 0.048 1.1E-06 54.8 4.9 23 171-193 2-24 (178)
304 cd01122 GP4d_helicase GP4d_hel 94.5 0.27 5.9E-06 54.1 11.4 53 169-226 30-82 (271)
305 cd03223 ABCD_peroxisomal_ALDP 94.5 0.25 5.5E-06 49.4 10.0 116 170-293 28-151 (166)
306 PRK10867 signal recognition pa 94.5 0.1 2.2E-06 60.2 7.9 25 168-192 99-123 (433)
307 PHA02244 ATPase-like protein 94.4 0.22 4.8E-06 55.3 10.0 22 171-192 121-142 (383)
308 KOG2004 Mitochondrial ATP-depe 94.4 0.059 1.3E-06 63.1 5.8 53 141-193 410-462 (906)
309 KOG1532 GTPase XAB1, interacts 94.4 0.072 1.6E-06 54.8 5.7 31 167-197 17-47 (366)
310 PRK12726 flagellar biosynthesi 94.4 0.25 5.4E-06 55.0 10.4 90 168-261 205-296 (407)
311 TIGR00554 panK_bact pantothena 94.4 0.15 3.3E-06 55.4 8.7 25 167-191 60-84 (290)
312 cd00561 CobA_CobO_BtuR ATP:cor 94.4 0.099 2.1E-06 50.9 6.5 116 170-290 3-138 (159)
313 PRK00771 signal recognition pa 94.4 0.19 4.1E-06 58.2 9.9 88 168-261 94-186 (437)
314 TIGR00959 ffh signal recogniti 94.4 0.11 2.4E-06 59.9 7.9 90 168-261 98-193 (428)
315 cd01125 repA Hexameric Replica 94.3 0.25 5.3E-06 53.1 10.1 22 171-192 3-24 (239)
316 PRK04301 radA DNA repair and r 94.3 0.16 3.5E-06 57.1 9.0 58 168-226 101-160 (317)
317 cd03238 ABC_UvrA The excision 94.3 0.17 3.6E-06 50.9 8.1 115 170-294 22-153 (176)
318 COG1136 SalX ABC-type antimicr 94.3 0.26 5.6E-06 50.9 9.5 62 236-297 146-210 (226)
319 PRK07132 DNA polymerase III su 94.3 1.8 3.9E-05 47.6 16.5 155 169-353 18-185 (299)
320 cd03222 ABC_RNaseL_inhibitor T 94.2 0.18 3.9E-06 50.7 8.2 24 170-193 26-49 (177)
321 cd03228 ABCC_MRP_Like The MRP 94.2 0.19 4.1E-06 50.7 8.5 24 170-193 29-52 (171)
322 PF10236 DAP3: Mitochondrial r 94.2 2 4.3E-05 47.8 17.1 49 301-350 258-306 (309)
323 TIGR02239 recomb_RAD51 DNA rep 94.2 0.23 4.9E-06 55.3 9.7 59 168-227 95-155 (316)
324 PTZ00301 uridine kinase; Provi 94.2 0.07 1.5E-06 55.3 5.3 24 169-192 3-26 (210)
325 COG1223 Predicted ATPase (AAA+ 94.2 0.54 1.2E-05 48.3 11.2 156 142-320 121-297 (368)
326 COG1428 Deoxynucleoside kinase 94.2 0.034 7.4E-07 55.6 2.8 26 169-194 4-29 (216)
327 PF00560 LRR_1: Leucine Rich R 94.1 0.019 4.2E-07 34.8 0.7 22 554-575 1-22 (22)
328 PRK11608 pspF phage shock prot 94.1 0.13 2.8E-06 57.9 7.7 46 143-192 7-52 (326)
329 COG0468 RecA RecA/RadA recombi 94.1 0.19 4E-06 54.1 8.5 88 167-259 58-150 (279)
330 cd01131 PilT Pilus retraction 94.1 0.064 1.4E-06 55.5 4.9 110 170-292 2-111 (198)
331 cd02019 NK Nucleoside/nucleoti 94.1 0.037 8E-07 45.7 2.5 22 171-192 1-22 (69)
332 cd03281 ABC_MSH5_euk MutS5 hom 94.1 0.056 1.2E-06 56.5 4.5 23 169-191 29-51 (213)
333 cd03216 ABC_Carb_Monos_I This 94.1 0.14 3E-06 51.2 7.0 114 170-292 27-144 (163)
334 PLN00020 ribulose bisphosphate 94.0 0.087 1.9E-06 57.9 5.7 27 167-193 146-172 (413)
335 PF03308 ArgK: ArgK protein; 94.0 0.09 1.9E-06 54.8 5.6 63 150-218 14-76 (266)
336 COG0396 sufC Cysteine desulfur 94.0 0.47 1E-05 48.2 10.4 61 241-301 153-215 (251)
337 KOG1051 Chaperone HSP104 and r 94.0 0.27 5.9E-06 60.9 10.5 119 143-274 563-684 (898)
338 cd01124 KaiC KaiC is a circadi 94.0 0.16 3.5E-06 52.2 7.7 37 172-212 2-38 (187)
339 PF13238 AAA_18: AAA domain; P 94.0 0.039 8.4E-07 52.7 2.8 21 172-192 1-21 (129)
340 KOG0733 Nuclear AAA ATPase (VC 94.0 0.8 1.7E-05 53.1 13.2 131 169-321 545-693 (802)
341 TIGR01817 nifA Nif-specific re 94.0 0.49 1.1E-05 57.6 13.0 50 140-193 194-243 (534)
342 KOG0473 Leucine-rich repeat pr 94.0 0.0025 5.4E-08 63.4 -5.4 85 549-634 38-122 (326)
343 TIGR00235 udk uridine kinase. 94.0 0.047 1E-06 57.1 3.6 26 167-192 4-29 (207)
344 PLN03187 meiotic recombination 93.9 0.35 7.5E-06 54.1 10.4 59 168-227 125-185 (344)
345 TIGR02236 recomb_radA DNA repa 93.9 0.29 6.2E-06 55.0 10.0 58 168-226 94-153 (310)
346 TIGR02974 phageshock_pspF psp 93.9 0.16 3.4E-06 57.1 7.8 45 144-192 1-45 (329)
347 PRK08972 fliI flagellum-specif 93.9 0.22 4.8E-06 56.8 9.0 86 169-260 162-262 (444)
348 PRK05480 uridine/cytidine kina 93.9 0.049 1.1E-06 57.2 3.6 27 167-193 4-30 (209)
349 KOG0730 AAA+-type ATPase [Post 93.8 0.49 1.1E-05 55.6 11.5 26 168-193 467-492 (693)
350 cd01135 V_A-ATPase_B V/A-type 93.8 0.25 5.4E-06 52.7 8.6 92 170-261 70-177 (276)
351 PRK10733 hflB ATP-dependent me 93.7 0.42 9E-06 59.2 11.8 130 170-321 186-336 (644)
352 COG2842 Uncharacterized ATPase 93.7 1.4 3E-05 47.0 13.7 95 170-274 95-189 (297)
353 PRK15429 formate hydrogenlyase 93.7 0.23 4.9E-06 62.5 9.6 133 142-290 376-521 (686)
354 PLN03186 DNA repair protein RA 93.6 0.38 8.2E-06 53.9 10.1 59 168-227 122-182 (342)
355 PF07724 AAA_2: AAA domain (Cd 93.6 0.061 1.3E-06 53.8 3.5 91 169-275 3-104 (171)
356 TIGR02858 spore_III_AA stage I 93.6 0.23 5E-06 53.6 8.1 126 150-292 97-231 (270)
357 TIGR00150 HI0065_YjeE ATPase, 93.6 0.1 2.2E-06 49.1 4.7 42 149-194 6-47 (133)
358 PRK14723 flhF flagellar biosyn 93.5 0.38 8.3E-06 59.0 10.7 87 169-260 185-273 (767)
359 cd03230 ABC_DR_subfamily_A Thi 93.5 0.3 6.6E-06 49.3 8.5 24 170-193 27-50 (173)
360 PRK06547 hypothetical protein; 93.5 0.066 1.4E-06 53.6 3.6 26 167-192 13-38 (172)
361 cd03282 ABC_MSH4_euk MutS4 hom 93.5 0.08 1.7E-06 54.8 4.3 120 169-297 29-158 (204)
362 COG1102 Cmk Cytidylate kinase 93.5 0.15 3.1E-06 48.6 5.4 43 171-228 2-44 (179)
363 TIGR03877 thermo_KaiC_1 KaiC d 93.4 0.39 8.5E-06 51.4 9.6 49 167-221 19-67 (237)
364 PRK06762 hypothetical protein; 93.4 0.065 1.4E-06 53.9 3.4 24 169-192 2-25 (166)
365 TIGR00064 ftsY signal recognit 93.4 0.25 5.4E-06 53.7 8.0 90 167-261 70-165 (272)
366 KOG2739 Leucine-rich acidic nu 93.4 0.066 1.4E-06 55.3 3.3 84 573-659 40-128 (260)
367 PRK08533 flagellar accessory p 93.4 0.37 8.1E-06 51.1 9.2 48 169-222 24-71 (230)
368 COG1703 ArgK Putative periplas 93.4 0.11 2.4E-06 54.8 5.0 62 152-219 38-99 (323)
369 KOG0729 26S proteasome regulat 93.4 0.63 1.4E-05 47.7 10.1 50 143-192 178-234 (435)
370 cd03217 ABC_FeS_Assembly ABC-t 93.4 0.21 4.6E-06 51.8 7.3 23 170-192 27-49 (200)
371 PRK06002 fliI flagellum-specif 93.4 0.36 7.8E-06 55.5 9.5 86 169-259 165-263 (450)
372 PRK14721 flhF flagellar biosyn 93.3 0.35 7.5E-06 55.5 9.4 24 169-192 191-214 (420)
373 PTZ00035 Rad51 protein; Provis 93.3 0.56 1.2E-05 52.7 10.9 59 168-227 117-177 (337)
374 KOG0473 Leucine-rich repeat pr 93.3 0.005 1.1E-07 61.4 -4.6 92 565-658 30-122 (326)
375 PF12775 AAA_7: P-loop contain 93.3 0.065 1.4E-06 58.2 3.3 95 152-267 23-117 (272)
376 PHA00729 NTP-binding motif con 93.3 0.11 2.4E-06 53.6 4.8 25 168-192 16-40 (226)
377 cd03283 ABC_MutS-like MutS-lik 93.2 0.065 1.4E-06 55.3 3.2 22 170-191 26-47 (199)
378 COG0464 SpoVK ATPases of the A 93.2 0.86 1.9E-05 55.1 13.3 133 167-321 274-424 (494)
379 PRK05917 DNA polymerase III su 93.1 1.1 2.4E-05 48.5 12.3 132 151-307 6-154 (290)
380 cd03246 ABCC_Protease_Secretio 93.1 0.33 7.2E-06 49.1 8.0 24 170-193 29-52 (173)
381 KOG2123 Uncharacterized conser 93.1 0.012 2.6E-07 60.4 -2.4 81 548-629 36-123 (388)
382 TIGR03878 thermo_KaiC_2 KaiC d 93.0 0.29 6.3E-06 53.0 7.9 40 168-211 35-74 (259)
383 COG4088 Predicted nucleotide k 93.0 0.034 7.3E-07 54.7 0.6 24 170-193 2-25 (261)
384 TIGR03575 selen_PSTK_euk L-ser 93.0 0.23 5.1E-06 55.2 7.1 23 172-194 2-24 (340)
385 COG1419 FlhF Flagellar GTP-bin 92.9 0.32 6.9E-06 54.3 8.0 89 169-261 203-292 (407)
386 PRK03839 putative kinase; Prov 92.9 0.074 1.6E-06 54.3 3.0 23 171-193 2-24 (180)
387 PRK06995 flhF flagellar biosyn 92.9 0.53 1.1E-05 55.0 10.1 87 169-260 256-344 (484)
388 PF13504 LRR_7: Leucine rich r 92.9 0.064 1.4E-06 30.1 1.3 16 577-592 2-17 (17)
389 PF13481 AAA_25: AAA domain; P 92.9 0.36 7.9E-06 49.9 8.2 41 170-212 33-81 (193)
390 PF08298 AAA_PrkA: PrkA AAA do 92.9 0.14 3.1E-06 56.1 5.1 51 141-191 60-110 (358)
391 PTZ00088 adenylate kinase 1; P 92.9 0.084 1.8E-06 55.5 3.3 21 172-192 9-29 (229)
392 TIGR00390 hslU ATP-dependent p 92.8 0.26 5.7E-06 55.6 7.2 52 142-193 12-71 (441)
393 PRK05201 hslU ATP-dependent pr 92.8 0.24 5.2E-06 55.9 6.8 53 141-193 14-74 (443)
394 PRK04040 adenylate kinase; Pro 92.8 0.087 1.9E-06 53.7 3.2 24 170-193 3-26 (188)
395 PF00154 RecA: recA bacterial 92.7 0.19 4.1E-06 55.2 5.9 84 168-260 52-141 (322)
396 PRK08927 fliI flagellum-specif 92.7 0.47 1E-05 54.5 9.2 85 169-259 158-257 (442)
397 cd02027 APSK Adenosine 5'-phos 92.7 0.22 4.8E-06 48.7 5.8 23 171-193 1-23 (149)
398 PRK08149 ATP synthase SpaL; Va 92.7 0.38 8.2E-06 55.2 8.4 85 169-259 151-250 (428)
399 PLN02348 phosphoribulokinase 92.7 0.38 8.2E-06 54.0 8.2 27 167-193 47-73 (395)
400 PRK00625 shikimate kinase; Pro 92.6 0.08 1.7E-06 53.0 2.7 23 171-193 2-24 (173)
401 PRK05022 anaerobic nitric oxid 92.6 0.32 6.9E-06 58.6 8.3 134 141-290 186-332 (509)
402 PF08433 KTI12: Chromatin asso 92.6 0.21 4.7E-06 53.9 6.1 24 170-193 2-25 (270)
403 cd00267 ABC_ATPase ABC (ATP-bi 92.5 0.3 6.6E-06 48.4 6.7 115 170-294 26-144 (157)
404 PF00910 RNA_helicase: RNA hel 92.5 0.072 1.6E-06 48.6 2.1 22 172-193 1-22 (107)
405 COG5635 Predicted NTPase (NACH 92.5 0.16 3.5E-06 64.9 5.9 199 169-371 222-446 (824)
406 TIGR01360 aden_kin_iso1 adenyl 92.5 0.097 2.1E-06 53.9 3.3 23 169-191 3-25 (188)
407 PRK15453 phosphoribulokinase; 92.4 0.53 1.2E-05 50.3 8.5 24 168-191 4-27 (290)
408 PF03205 MobB: Molybdopterin g 92.4 0.14 3.1E-06 49.2 4.0 39 170-211 1-39 (140)
409 KOG2170 ATPase of the AAA+ sup 92.4 0.31 6.8E-06 51.4 6.6 112 142-271 82-199 (344)
410 cd01134 V_A-ATPase_A V/A-type 92.4 0.99 2.1E-05 49.8 10.6 47 170-222 158-205 (369)
411 cd02024 NRK1 Nicotinamide ribo 92.4 0.085 1.8E-06 53.3 2.5 22 171-192 1-22 (187)
412 COG0194 Gmk Guanylate kinase [ 92.4 0.15 3.2E-06 50.2 3.9 24 170-193 5-28 (191)
413 cd01121 Sms Sms (bacterial rad 92.3 0.56 1.2E-05 53.4 9.2 82 169-260 82-168 (372)
414 PTZ00185 ATPase alpha subunit; 92.3 0.67 1.5E-05 53.5 9.6 92 170-261 190-300 (574)
415 TIGR03498 FliI_clade3 flagella 92.2 0.51 1.1E-05 54.2 8.8 85 169-259 140-239 (418)
416 COG1066 Sms Predicted ATP-depe 92.2 0.31 6.8E-06 53.9 6.6 81 170-261 94-179 (456)
417 COG1936 Predicted nucleotide k 92.2 0.11 2.3E-06 50.2 2.8 20 171-190 2-21 (180)
418 cd03243 ABC_MutS_homologs The 92.2 0.11 2.4E-06 54.1 3.2 22 170-191 30-51 (202)
419 cd02023 UMPK Uridine monophosp 92.2 0.089 1.9E-06 54.7 2.5 22 171-192 1-22 (198)
420 COG3640 CooC CO dehydrogenase 92.2 0.19 4.2E-06 51.0 4.7 43 171-216 2-44 (255)
421 TIGR02322 phosphon_PhnN phosph 92.2 0.11 2.3E-06 53.0 3.1 24 170-193 2-25 (179)
422 cd01136 ATPase_flagellum-secre 92.2 0.81 1.8E-05 50.7 10.0 84 170-259 70-168 (326)
423 PF01583 APS_kinase: Adenylyls 92.2 0.13 2.9E-06 49.8 3.5 26 169-194 2-27 (156)
424 TIGR01069 mutS2 MutS2 family p 92.2 0.31 6.7E-06 61.2 7.6 23 169-191 322-344 (771)
425 KOG0743 AAA+-type ATPase [Post 92.2 1.6 3.4E-05 49.3 12.1 24 170-193 236-259 (457)
426 PF03969 AFG1_ATPase: AFG1-lik 92.1 0.32 6.9E-06 55.0 6.9 80 168-265 61-142 (362)
427 cd03232 ABC_PDR_domain2 The pl 92.1 0.56 1.2E-05 48.3 8.3 23 170-192 34-56 (192)
428 TIGR00708 cobA cob(I)alamin ad 92.1 0.54 1.2E-05 46.5 7.6 116 170-290 6-140 (173)
429 cd01132 F1_ATPase_alpha F1 ATP 92.1 0.66 1.4E-05 49.6 8.7 83 170-260 70-171 (274)
430 PF03193 DUF258: Protein of un 92.1 0.21 4.5E-06 48.7 4.7 36 149-193 24-59 (161)
431 PRK12597 F0F1 ATP synthase sub 92.0 0.27 5.9E-06 56.9 6.2 88 169-259 143-246 (461)
432 PRK10751 molybdopterin-guanine 91.9 0.14 3.1E-06 50.7 3.4 27 168-194 5-31 (173)
433 PRK09280 F0F1 ATP synthase sub 91.9 0.6 1.3E-05 53.9 8.9 88 169-259 144-247 (463)
434 COG2019 AdkA Archaeal adenylat 91.9 0.14 3E-06 49.0 3.0 23 169-191 4-26 (189)
435 PRK05973 replicative DNA helic 91.9 0.54 1.2E-05 49.4 7.9 47 169-221 64-110 (237)
436 PRK07594 type III secretion sy 91.8 0.71 1.5E-05 53.1 9.3 86 169-260 155-255 (433)
437 TIGR01425 SRP54_euk signal rec 91.8 0.44 9.6E-06 54.7 7.6 26 168-193 99-124 (429)
438 PF06745 KaiC: KaiC; InterPro 91.8 0.19 4E-06 53.6 4.5 85 169-259 19-124 (226)
439 PRK06936 type III secretion sy 91.8 0.68 1.5E-05 53.2 9.0 86 169-260 162-262 (439)
440 KOG4252 GTP-binding protein [S 91.8 0.45 9.8E-06 45.4 6.2 37 170-209 21-57 (246)
441 PRK05688 fliI flagellum-specif 91.7 0.85 1.8E-05 52.6 9.8 86 169-260 168-268 (451)
442 cd02028 UMPK_like Uridine mono 91.7 0.11 2.5E-06 52.5 2.6 23 171-193 1-23 (179)
443 COG4618 ArpD ABC-type protease 91.7 1.2 2.5E-05 50.9 10.4 22 170-191 363-384 (580)
444 PRK10463 hydrogenase nickel in 91.7 1.6 3.4E-05 47.3 11.2 27 167-193 102-128 (290)
445 TIGR03496 FliI_clade1 flagella 91.7 0.65 1.4E-05 53.4 8.8 85 169-259 137-236 (411)
446 TIGR01359 UMP_CMP_kin_fam UMP- 91.6 0.11 2.4E-06 53.2 2.4 22 171-192 1-22 (183)
447 PRK00131 aroK shikimate kinase 91.6 0.14 2.9E-06 52.1 3.1 25 169-193 4-28 (175)
448 PRK00889 adenylylsulfate kinas 91.6 0.16 3.4E-06 51.6 3.5 25 169-193 4-28 (175)
449 PRK12678 transcription termina 91.6 0.28 6.1E-06 57.1 5.7 84 170-259 417-512 (672)
450 PRK04328 hypothetical protein; 91.6 0.58 1.3E-05 50.4 8.0 41 168-212 22-62 (249)
451 CHL00206 ycf2 Ycf2; Provisiona 91.6 0.83 1.8E-05 60.7 10.4 26 169-194 1630-1655(2281)
452 PRK10416 signal recognition pa 91.5 0.48 1E-05 52.7 7.4 27 168-194 113-139 (318)
453 PF06309 Torsin: Torsin; Inte 91.5 0.32 7E-06 44.8 4.9 51 142-192 25-76 (127)
454 TIGR03881 KaiC_arch_4 KaiC dom 91.5 0.8 1.7E-05 48.8 9.0 41 168-212 19-59 (229)
455 cd02021 GntK Gluconate kinase 91.5 0.13 2.7E-06 50.7 2.6 22 171-192 1-22 (150)
456 PRK09099 type III secretion sy 91.5 0.67 1.5E-05 53.5 8.7 86 169-259 163-262 (441)
457 TIGR03263 guanyl_kin guanylate 91.5 0.15 3.1E-06 52.2 3.1 23 170-192 2-24 (180)
458 PRK06217 hypothetical protein; 91.4 0.13 2.9E-06 52.4 2.8 23 171-193 3-25 (183)
459 cd00820 PEPCK_HprK Phosphoenol 91.4 0.18 3.8E-06 45.3 3.1 21 170-190 16-36 (107)
460 PRK13765 ATP-dependent proteas 91.4 0.23 5E-06 60.3 5.1 74 142-227 31-104 (637)
461 cd04159 Arl10_like Arl10-like 91.4 1.7 3.8E-05 42.8 10.9 21 172-192 2-22 (159)
462 cd03213 ABCG_EPDR ABCG transpo 91.3 0.87 1.9E-05 47.0 8.7 24 170-193 36-59 (194)
463 PRK06731 flhF flagellar biosyn 91.3 1.2 2.6E-05 48.1 9.9 89 169-262 75-166 (270)
464 PRK03846 adenylylsulfate kinas 91.3 0.18 3.9E-06 52.2 3.6 26 167-192 22-47 (198)
465 PRK05922 type III secretion sy 91.3 1 2.2E-05 51.9 9.7 84 170-259 158-256 (434)
466 COG1124 DppF ABC-type dipeptid 91.3 0.16 3.5E-06 52.1 3.1 22 170-191 34-55 (252)
467 cd00984 DnaB_C DnaB helicase C 91.3 0.84 1.8E-05 49.2 9.0 53 169-226 13-65 (242)
468 cd00227 CPT Chloramphenicol (C 91.2 0.15 3.3E-06 51.6 2.9 23 170-192 3-25 (175)
469 PF08477 Miro: Miro-like prote 91.2 0.17 3.7E-06 47.4 3.0 23 172-194 2-24 (119)
470 TIGR03305 alt_F1F0_F1_bet alte 91.1 0.49 1.1E-05 54.5 7.1 87 170-259 139-241 (449)
471 cd03227 ABC_Class2 ABC-type Cl 91.1 0.53 1.2E-05 46.9 6.6 20 170-189 22-41 (162)
472 PF07726 AAA_3: ATPase family 91.1 0.12 2.6E-06 47.7 1.7 21 172-192 2-22 (131)
473 PRK13949 shikimate kinase; Pro 91.1 0.16 3.4E-06 50.9 2.8 23 171-193 3-25 (169)
474 PRK07276 DNA polymerase III su 91.1 7.1 0.00015 42.6 15.5 69 248-317 102-172 (290)
475 PRK14738 gmk guanylate kinase; 91.0 0.19 4.1E-06 52.3 3.5 25 167-191 11-35 (206)
476 PRK10875 recD exonuclease V su 91.0 1.1 2.4E-05 54.6 10.3 116 170-289 168-301 (615)
477 cd03369 ABCC_NFT1 Domain 2 of 91.0 1.8 4E-05 45.2 10.9 23 170-192 35-57 (207)
478 cd02020 CMPK Cytidine monophos 91.0 0.15 3.2E-06 50.0 2.5 22 171-192 1-22 (147)
479 cd00071 GMPK Guanosine monopho 90.9 0.16 3.5E-06 48.8 2.6 22 171-192 1-22 (137)
480 PRK12339 2-phosphoglycerate ki 90.9 0.19 4.2E-06 51.5 3.3 24 169-192 3-26 (197)
481 TIGR01040 V-ATPase_V1_B V-type 90.9 0.53 1.2E-05 54.0 7.0 91 170-260 142-257 (466)
482 KOG3347 Predicted nucleotide k 90.9 0.17 3.7E-06 47.2 2.5 22 170-191 8-29 (176)
483 cd03287 ABC_MSH3_euk MutS3 hom 90.9 1.2 2.6E-05 46.7 9.1 23 169-191 31-53 (222)
484 cd02029 PRK_like Phosphoribulo 90.9 0.65 1.4E-05 49.2 7.1 76 171-250 1-84 (277)
485 PRK06793 fliI flagellum-specif 90.8 0.94 2E-05 52.1 9.0 88 169-261 156-257 (432)
486 COG0714 MoxR-like ATPases [Gen 90.8 0.43 9.3E-06 54.0 6.3 62 143-219 25-86 (329)
487 TIGR03497 FliI_clade2 flagella 90.8 0.85 1.9E-05 52.5 8.6 25 169-193 137-161 (413)
488 PRK10078 ribose 1,5-bisphospho 90.8 0.19 4.2E-06 51.5 3.2 23 170-192 3-25 (186)
489 KOG0738 AAA+-type ATPase [Post 90.7 0.52 1.1E-05 51.5 6.3 24 170-193 246-269 (491)
490 PRK13947 shikimate kinase; Pro 90.7 0.17 3.8E-06 51.1 2.8 23 171-193 3-25 (171)
491 PRK10820 DNA-binding transcrip 90.7 0.59 1.3E-05 56.4 7.7 47 142-192 204-250 (520)
492 TIGR03324 alt_F1F0_F1_al alter 90.7 0.86 1.9E-05 53.1 8.5 87 169-261 162-265 (497)
493 COG4240 Predicted kinase [Gene 90.7 1 2.2E-05 45.4 7.7 82 167-251 48-134 (300)
494 PF03266 NTPase_1: NTPase; In 90.7 0.24 5.2E-06 49.3 3.6 22 172-193 2-23 (168)
495 PRK14737 gmk guanylate kinase; 90.6 0.23 4.9E-06 50.6 3.5 25 168-192 3-27 (186)
496 COG2274 SunT ABC-type bacterio 90.6 1.5 3.1E-05 54.5 11.0 22 170-191 500-521 (709)
497 PRK00300 gmk guanylate kinase; 90.6 0.2 4.4E-06 52.4 3.2 24 169-192 5-28 (205)
498 PF13306 LRR_5: Leucine rich r 90.5 0.44 9.5E-06 45.3 5.3 99 547-652 6-108 (129)
499 TIGR00041 DTMP_kinase thymidyl 90.5 1.2 2.5E-05 46.2 8.8 25 170-194 4-28 (195)
500 PHA02774 E1; Provisional 90.5 1 2.3E-05 52.9 8.9 38 167-210 432-469 (613)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-84 Score=785.19 Aligned_cols=629 Identities=30% Similarity=0.450 Sum_probs=492.7
Q ss_pred hhHHHHHHHHHHHHhcChHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHhchHHHH
Q 000803 3 ELLLSAFLDVLFDRLASPDLFNFIRQLQGGVSSELRKWERKLKLIQAVLRDAEEKQLTDEAVKMWLDDLQDLACDAEDIL 82 (1277)
Q Consensus 3 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~l~~a~~~~~~~~~~~~w~~~~~~~~~d~ed~l 82 (1277)
++.+|..++++...+.. ++..-.++ ++.+..|+++|..++++++||++++.+...++.|.+.+++++|++||.+
T Consensus 2 ~~~~s~~~~~~~~~l~~----~~~~~~~~--~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~ 75 (889)
T KOG4658|consen 2 GACVSFGVEKLDQLLNR----ESECLDGK--DNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDII 75 (889)
T ss_pred CeEEEEehhhHHHHHHH----HHHHHhch--HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555443322 22222333 7889999999999999999999999888999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCC----------CCc--------------hHHHHHhhhcCccccCCCCCCcccccCCCCCCCC
Q 000803 83 DEFATQALEHKLMAEGLDQ----------PGS--------------SKLCKQRIELGLQLIPGGTSSTAAAQRRPPSSSV 138 (1277)
Q Consensus 83 d~~~~~~~~~~~~~~~~~~----------~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1277)
+.|.......+........ ... .++.+....++.+.................+.+.
T Consensus 76 ~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~ 155 (889)
T KOG4658|consen 76 WLFLVEEIERKANDLLSTRSVERQRLCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPI 155 (889)
T ss_pred HHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCC
Confidence 9998876544322111000 000 0122222233322211100000011111122222
Q ss_pred CCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccc-ccccCCcceEEEEEeCCCcCHHH
Q 000803 139 PTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKA-VEDSGKFDVKAWVCVSDDFDVLS 217 (1277)
Q Consensus 139 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~-~~~~~~f~~~~wv~~s~~~~~~~ 217 (1277)
..... ||.+..++++.+.|..++ ..+++|+||||+||||||++++|+.. ++. +|+.++||.||+.++...
T Consensus 156 ~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~--~Fd~~iWV~VSk~f~~~~ 226 (889)
T KOG4658|consen 156 QSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGN--HFDGVIWVVVSKEFTTRK 226 (889)
T ss_pred Ccccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcc--cCceEEEEEEcccccHHh
Confidence 22333 999999999999998864 28999999999999999999999987 666 999999999999999999
Q ss_pred HHHHHHHHhcCCCCCC--CcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccc
Q 000803 218 ISKALLESITSATCDL--KTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVAST 295 (1277)
Q Consensus 218 ~~~~il~~l~~~~~~~--~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~ 295 (1277)
++++|++.++...... ...++.+..|.+.|++|||+||+||||+. .+|+.+..++|...+||+|++|||+++|+..
T Consensus 227 iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~ 304 (889)
T KOG4658|consen 227 IQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGR 304 (889)
T ss_pred HHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhc
Confidence 9999999998754432 33478899999999999999999999998 6799999999999999999999999999998
Q ss_pred -cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCC-ChhhHHHHHhhcc
Q 000803 296 -MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT-TYDMWDDILDSKI 373 (1277)
Q Consensus 296 -~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~l~~~~ 373 (1277)
++....++++.|+.+|||.||++.+|..... ..+.++++|++|+++|+|+|||++++|+.|+.+ +..+|+++.+...
T Consensus 305 ~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~ 383 (889)
T KOG4658|consen 305 AMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLK 383 (889)
T ss_pred cccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHcccc
Confidence 7777889999999999999999999875332 233489999999999999999999999999999 8889999998765
Q ss_pred cCCC----C-CCChHHHHHHhhhcCChhhhHHHhHhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHHHHHHH
Q 000803 374 WDLP----R-QSSILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDL 448 (1277)
Q Consensus 374 ~~~~----~-~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L 448 (1277)
+... . .+.+.++|++||+.||+++|.||+|||+||+||.|+++.++.+|+||||+.+..++..+++.|..|+.+|
T Consensus 384 s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~L 463 (889)
T KOG4658|consen 384 SSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEEL 463 (889)
T ss_pred ccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHH
Confidence 4422 1 4679999999999999999999999999999999999999999999999998777889999999999999
Q ss_pred HhCCCccccC--CCCCccchhHHHHHHHHHhcc-----ccEEEeccC-----CccccccCceeEEEeEcCccCccccchh
Q 000803 449 VSRSIFQRTG--FGSSKFAMHDLVHALAQLVSG-----ETIFRLEED-----NSSSRRFERVRHSSYACGELDGRNKFKV 516 (1277)
Q Consensus 449 ~~~~li~~~~--~~~~~~~mhdlv~~~~~~~~~-----~~~~~~~~~-----~~~~~~~~~~r~l~~~~~~~~~~~~~~~ 516 (1277)
|+++|++..+ ....+|+|||+||++|.++++ ++..++..+ ......+..+|+++++.+.... ...
T Consensus 464 V~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~---~~~ 540 (889)
T KOG4658|consen 464 VRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH---IAG 540 (889)
T ss_pred HHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh---ccC
Confidence 9999999876 355789999999999999999 444443332 1122334678999998875432 223
Q ss_pred hcccccccccccccCcccceeehhhhhhhhhhcCCCCeeeEEecCCCC-CCCCCcCCCCCCccceeeccCCccccccccc
Q 000803 517 FYEIEHLRTFLPLHKTDYIITCYITSMVLYDLLPKFKKLRLLSLQGYY-IGELPIPFEDLRLLRYLNLADTDIRSLPESS 595 (1277)
Q Consensus 517 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i 595 (1277)
...+++++||+...+.. ....+..++|..++.||||||++|. +..+|+.|+.|.|||||+|+++.|..+|..+
T Consensus 541 ~~~~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l 614 (889)
T KOG4658|consen 541 SSENPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL 614 (889)
T ss_pred CCCCCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence 34566899999876542 1344566789999999999999875 8999999999999999999999999999999
Q ss_pred cccccCcEEEecCCcCccccchhhccccCcCeeeecCccccccCCCCCCCCCCCcccCceeeCC
Q 000803 596 CSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMPFGMKELKNLQTLSNFVVGK 659 (1277)
Q Consensus 596 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~ 659 (1277)
++|+.|.+||+..+..+..+|..+..|++||+|.+.... ...-...++.+.+|++|.......
T Consensus 615 ~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 615 GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred HHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeec
Confidence 999999999999987777787777889999999997654 111122255556666665555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=2.3e-62 Score=635.98 Aligned_cols=475 Identities=20% Similarity=0.282 Sum_probs=332.0
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe---CCC-----
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV---SDD----- 212 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~---s~~----- 212 (1277)
...+|||+..++++..+|.... +++++|+|+||||+||||||+++|+.. .. +|+..+|+.. +..
T Consensus 183 ~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~l--~~--~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 183 FEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSRL--SR--QFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHHH--hh--cCCeEEEeeccccccchhhcc
Confidence 4569999999999998885432 568999999999999999999999854 33 7888877642 111
Q ss_pred ------cC-HHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEE
Q 000803 213 ------FD-VLSISKALLESITSATC-DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 213 ------~~-~~~~~~~il~~l~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
+. ...++++++.++..... ..... ..+++.++++|+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~----~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHL----GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCH----HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 12344555555433221 11111 3567778999999999999976 67888877666668899999
Q ss_pred EEccccccccccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCCChhh
Q 000803 285 ITTRNSHVASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDM 364 (1277)
Q Consensus 285 vTtr~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~ 364 (1277)
||||+.+++..++....|+++.+++++||+||+++||+.. .+++...+++++|+++|+|+|||++++|+.|++++..+
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~ 406 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKED 406 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHH
Confidence 9999999998777778999999999999999999999653 23456789999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCChHHHHHHhhhcCCh-hhhHHHhHhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHH
Q 000803 365 WDDILDSKIWDLPRQSSILPVLRLSYHHLPS-HLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQ 443 (1277)
Q Consensus 365 w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~ 443 (1277)
|+.++++..... +..|.++|++||++|++ ..|.||+++|+|++++.++ .+..|+|.+.... +.
T Consensus 407 W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~~ 470 (1153)
T PLN03210 407 WMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------NI 470 (1153)
T ss_pred HHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------hh
Confidence 999998755432 35799999999999987 5999999999999886553 4778888765532 12
Q ss_pred HHHHHHhCCCccccCCCCCccchhHHHHHHHHHhccccE-------EEeccCC-----ccccccCceeEEEeEcCccCcc
Q 000803 444 CFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQLVSGETI-------FRLEEDN-----SSSRRFERVRHSSYACGELDGR 511 (1277)
Q Consensus 444 ~~~~L~~~~li~~~~~~~~~~~mhdlv~~~~~~~~~~~~-------~~~~~~~-----~~~~~~~~~r~l~~~~~~~~~~ 511 (1277)
.++.|+++||++... .++.|||++|++|+.++.++. +.+.... ........++++++........
T Consensus 471 ~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~ 547 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDEL 547 (1153)
T ss_pred ChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCcccee
Confidence 388999999998753 469999999999999986553 1111000 0111224566666554332211
Q ss_pred c-cchhhcccccccccccccCcccceeehhhhhhhhhhcCCC-CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccc
Q 000803 512 N-KFKVFYEIEHLRTFLPLHKTDYIITCYITSMVLYDLLPKF-KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIR 589 (1277)
Q Consensus 512 ~-~~~~~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~ 589 (1277)
. ....|.++.+||.|......... .......++.+ |..+ ..||.|++.++.+..+|..| ...+|++|+|+++.+.
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~-~~~~~~~lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~ 624 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQ-KKEVRWHLPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE 624 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccc-cccceeecCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc
Confidence 0 12345566666666543321000 00000111111 2222 45777777777777777666 3567777777777777
Q ss_pred cccccccccccCcEEEecCCcCccccchhhccccCcCeeeecCccccccCCCCCCCCCCCcccCc
Q 000803 590 SLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMPFGMKELKNLQTLSN 654 (1277)
Q Consensus 590 ~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~ 654 (1277)
.+|..+..+.+|++|+|++|+.+..+|. ++.+++|++|++++|..+..+|..++++++|+.|++
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 7777777777777777777666666664 666777777777776656666665555555555543
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-41 Score=379.96 Aligned_cols=276 Identities=37% Similarity=0.650 Sum_probs=223.7
Q ss_pred chhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 147 REEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
||.++++|.++|.... ++.++|+|+||||+||||||.+++++...+. +|+.++|+.++...+...+++.|+.++
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~--~f~~v~wv~~~~~~~~~~~~~~i~~~l 74 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKN--RFDGVIWVSLSKNPSLEQLLEQILRQL 74 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCC--CCTEEEEEEEES-SCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeeccccccccc--ccccccccccccccccccccccccccc
Confidence 7899999999998754 4679999999999999999999999866555 999999999999999999999999999
Q ss_pred cCCCC---CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccccCC-Ccee
Q 000803 227 TSATC---DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVASTMGP-IDHY 302 (1277)
Q Consensus 227 ~~~~~---~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~~~~-~~~~ 302 (1277)
+.... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..++. ...+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~ 152 (287)
T PF00931_consen 75 GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVI 152 (287)
T ss_dssp TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEE
T ss_pred cccccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccc
Confidence 87743 4567888999999999999999999999987 5888888888777789999999999999887654 5789
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCC-ChhhHHHHHhhcccCCCC---
Q 000803 303 NLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT-TYDMWDDILDSKIWDLPR--- 378 (1277)
Q Consensus 303 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~~~~w~~~l~~~~~~~~~--- 378 (1277)
++++|+.+||++||.+.++... ....+..++.+++|+++|+|+||||+++|++|+.+ +..+|..+++...+....
T Consensus 153 ~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~ 231 (287)
T PF00931_consen 153 ELEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRD 231 (287)
T ss_dssp ECSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSG
T ss_pred cccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999997544 12234456788999999999999999999999776 788999988764443321
Q ss_pred -CCChHHHHHHhhhcCChhhhHHHhHhcccCCCceeChHHHHHHHHhCCccccC
Q 000803 379 -QSSILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQS 431 (1277)
Q Consensus 379 -~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~ 431 (1277)
...+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+|+|+|...
T Consensus 232 ~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 232 YDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp SCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 35689999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.3e-34 Score=379.90 Aligned_cols=511 Identities=20% Similarity=0.208 Sum_probs=252.4
Q ss_pred cCCCCeeeEEecCCCCCC-CCCcCC-CCCCccceeeccCCccc-cccccccccccCcEEEecCCcCccccchhhccccCc
Q 000803 549 LPKFKKLRLLSLQGYYIG-ELPIPF-EDLRLLRYLNLADTDIR-SLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINL 625 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~-~lp~~~-~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 625 (1277)
|..+++|++|+|++|.+. .+|..+ ..+.+||+|+|++|.+. .+|. +.+.+|++|+|++|.....+|..++++++|
T Consensus 89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 166 (968)
T PLN00113 89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSL 166 (968)
T ss_pred HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCC
Confidence 455666666666666654 455443 36666666666666665 3343 456666666666654444566666666666
Q ss_pred CeeeecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCC
Q 000803 626 CHLDIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNL 705 (1277)
Q Consensus 626 ~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L 705 (1277)
++|++++|.....+|..++++++|++|++..+......+..+..+.+|+.|. +..+.+ .......+..+
T Consensus 167 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~--L~~n~l------~~~~p~~l~~l--- 235 (968)
T PLN00113 167 KVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY--LGYNNL------SGEIPYEIGGL--- 235 (968)
T ss_pred CEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE--CcCCcc------CCcCChhHhcC---
Confidence 6666666654445666666666666666666554443344444444433332 100000 00011112233
Q ss_pred CceEEEecCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCC-CCCcccCCCCCCCccEEEEcCCCCCCCCC-CCCCC
Q 000803 706 EALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGA-RFPLWIGDPLFSKMNVLELDDCWNCTSLP-SLGLL 783 (1277)
Q Consensus 706 ~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 783 (1277)
++|+.|++.++... .+|..+.. +++|+.|++++|...+.+| .+..+
T Consensus 236 ------------------------------~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l 283 (968)
T PLN00113 236 ------------------------------TSLNHLDLVYNNLTGPIPSSLGN--LKNLQYLFLYQNKLSGPIPPSIFSL 283 (968)
T ss_pred ------------------------------CCCCEEECcCceeccccChhHhC--CCCCCEEECcCCeeeccCchhHhhc
Confidence 33444444433322 23444433 4555555555554433444 44455
Q ss_pred CCCceeeeccCCCceEeccccccccccCCCcccceeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCC
Q 000803 784 SSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPE 863 (1277)
Q Consensus 784 ~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~ 863 (1277)
++|++|+++++. +....+..+ ..+++|+.|++.++.-...... .+..+++|+.|++++| .+.+.+|.
T Consensus 284 ~~L~~L~Ls~n~-l~~~~p~~~-----~~l~~L~~L~l~~n~~~~~~~~------~~~~l~~L~~L~L~~n-~l~~~~p~ 350 (968)
T PLN00113 284 QKLISLDLSDNS-LSGEIPELV-----IQLQNLEILHLFSNNFTGKIPV------ALTSLPRLQVLQLWSN-KFSGEIPK 350 (968)
T ss_pred cCcCEEECcCCe-eccCCChhH-----cCCCCCcEEECCCCccCCcCCh------hHhcCCCCCEEECcCC-CCcCcCCh
Confidence 555555555431 111110000 1122333333322211000000 0113566666666666 44444443
Q ss_pred C---CCCccEEEEecccccccccCCCCcceEEEeccccccccccCCchhhhhhhcccccceeecCCCCccccccCccccc
Q 000803 864 L---LPSLKTLVVSKCQKLKFSLSSYPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLL 940 (1277)
Q Consensus 864 ~---l~~L~~L~l~~~~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~l~~l 940 (1277)
. +++|+.|++++|..... .+. .+.
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~------------------------~p~------------------------~~~----- 377 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGE------------------------IPE------------------------GLC----- 377 (968)
T ss_pred HHhCCCCCcEEECCCCeeEee------------------------CCh------------------------hHh-----
Confidence 2 23344444433311000 000 000
Q ss_pred cccccccccccccCcceEEEEccCCCcCCChhhhhccccccceeEeeccCCcccccCCCCCCcccceeeccccccceecc
Q 000803 941 QTETISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIR 1020 (1277)
Q Consensus 941 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~ 1020 (1277)
..++|+.|++++|.....+|. .+..+++|+.|++++|.... ..|..+..+. .|+.|+++
T Consensus 378 -----------~~~~L~~L~l~~n~l~~~~p~-~~~~~~~L~~L~L~~n~l~~-----~~p~~~~~l~----~L~~L~Ls 436 (968)
T PLN00113 378 -----------SSGNLFKLILFSNSLEGEIPK-SLGACRSLRRVRLQDNSFSG-----ELPSEFTKLP----LVYFLDIS 436 (968)
T ss_pred -----------CcCCCCEEECcCCEecccCCH-HHhCCCCCCEEECcCCEeee-----ECChhHhcCC----CCCEEECc
Confidence 014566666766664444554 34556667777776664221 2222222222 33444444
Q ss_pred CCCCCccccCcCccccccCceeeecCCCccccccccccccEEEecccCCcccccccCccCcccEEEeecccccccCcCCC
Q 000803 1021 DCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGM 1100 (1277)
Q Consensus 1021 ~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l 1100 (1277)
+|...+.++..+..+++|+.|++++|...+.+|. ....++|+.|++++|...+.+|..+
T Consensus 437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---------------------~~~~~~L~~L~ls~n~l~~~~~~~~ 495 (968)
T PLN00113 437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---------------------SFGSKRLENLDLSRNQFSGAVPRKL 495 (968)
T ss_pred CCcccCccChhhccCCCCcEEECcCceeeeecCc---------------------ccccccceEEECcCCccCCccChhh
Confidence 4443334443333444555555555543333332 2223467777888877667777777
Q ss_pred CCCCCcCEEeccCCCCcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhhccC
Q 000803 1101 HKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMML 1180 (1277)
Q Consensus 1101 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~ 1180 (1277)
.++++|++|++++|.....+|. .+.++++|+.|++++|.....+|... ..
T Consensus 496 ~~l~~L~~L~Ls~N~l~~~~p~---------------------------~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~ 545 (968)
T PLN00113 496 GSLSELMQLKLSENKLSGEIPD---------------------------ELSSCKKLVSLDLSHNQLSGQIPASF---SE 545 (968)
T ss_pred hhhhccCEEECcCCcceeeCCh---------------------------HHcCccCCCEEECCCCcccccCChhH---hC
Confidence 7788888888887654444443 34455556666666655444454432 33
Q ss_pred CcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCCCCCCCCccceeeccCChhh
Q 000803 1181 PASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGLPSSLLSLEIKNCPKL 1243 (1277)
Q Consensus 1181 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~L 1243 (1277)
+++|++|++++|.....+| ..+.++++|+.|++++|+....+|..+.+.++....+.++|.+
T Consensus 546 l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 607 (968)
T PLN00113 546 MPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607 (968)
T ss_pred cccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccc
Confidence 4556666666665444555 4566777777777777766666776555545555555565544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-33 Score=368.76 Aligned_cols=507 Identities=19% Similarity=0.209 Sum_probs=326.5
Q ss_pred CeeeEEecCCCCCC-CCCcCCCCCCccceeeccCCccc-ccccccc-ccccCcEEEecCCcCccccchhhccccCcCeee
Q 000803 553 KKLRLLSLQGYYIG-ELPIPFEDLRLLRYLNLADTDIR-SLPESSC-SLLNLEILILRNCSSLIKLPSKIRRLINLCHLD 629 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 629 (1277)
.+++.|+|+++.+. .+|..|..+++|++|+|++|.+. .+|..+. .+.+|++|+|++|.....+|. +.+++|++|+
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~ 146 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD 146 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence 47899999999875 45788999999999999999997 7898776 999999999999766566775 6789999999
Q ss_pred ecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCCceE
Q 000803 630 IRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEALS 709 (1277)
Q Consensus 630 l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 709 (1277)
+++|.....+|..++++++|++|++.++......+..+.++++|+.| +
T Consensus 147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L--------------------------------~ 194 (968)
T PLN00113 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL--------------------------------T 194 (968)
T ss_pred CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee--------------------------------e
Confidence 99998555788889999999999998887655444445544444443 3
Q ss_pred EEecCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCC-CCCcccCCCCCCCccEEEEcCCCCCCCCC-CCCCCCCCc
Q 000803 710 LEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGA-RFPLWIGDPLFSKMNVLELDDCWNCTSLP-SLGLLSSLR 787 (1277)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~ 787 (1277)
++.+... ......+..+++|+.|++.++... .+|.++.. +++|+.|++++|...+.+| .++.+++|+
T Consensus 195 L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 195 LASNQLV---------GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG--LTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred ccCCCCc---------CcCChHHcCcCCccEEECcCCccCCcCChhHhc--CCCCCEEECcCceeccccChhHhCCCCCC
Confidence 3222100 011122334455555555555443 35555544 6666777776665544555 566666666
Q ss_pred eeeeccCCCceEeccccccccccCCCcccceeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCCC---
Q 000803 788 DLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPEL--- 864 (1277)
Q Consensus 788 ~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~--- 864 (1277)
.|.++++.-...++.. +..+++|+.|++++| .+.+.+|..
T Consensus 264 ~L~L~~n~l~~~~p~~------------------------------------l~~l~~L~~L~Ls~n-~l~~~~p~~~~~ 306 (968)
T PLN00113 264 YLFLYQNKLSGPIPPS------------------------------------IFSLQKLISLDLSDN-SLSGEIPELVIQ 306 (968)
T ss_pred EEECcCCeeeccCchh------------------------------------HhhccCcCEEECcCC-eeccCCChhHcC
Confidence 6666553211111100 113566677777666 454455532
Q ss_pred CCCccEEEEecccccccccCCCCcceEEEeccccccccccCCchhhhhhhcccccceeecCCCCccccccCccccccccc
Q 000803 865 LPSLKTLVVSKCQKLKFSLSSYPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLLQTET 944 (1277)
Q Consensus 865 l~~L~~L~l~~~~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~l~~l~~~~ 944 (1277)
+++|+.|++.+|...... +..+..
T Consensus 307 l~~L~~L~l~~n~~~~~~------------------------------------------------~~~~~~-------- 330 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKI------------------------------------------------PVALTS-------- 330 (968)
T ss_pred CCCCcEEECCCCccCCcC------------------------------------------------ChhHhc--------
Confidence 344444444443211100 000000
Q ss_pred cccccccccCcceEEEEccCCCcCCChhhhhccccccceeEeeccCCcccccCCCCCCcccceeeccccccceeccCCCC
Q 000803 945 ISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQ 1024 (1277)
Q Consensus 945 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~ 1024 (1277)
.++|+.|++++|.....+|. .+..+++|+.|++++|.... ..|..+..+. +++.|++++|..
T Consensus 331 --------l~~L~~L~L~~n~l~~~~p~-~l~~~~~L~~L~Ls~n~l~~-----~~p~~~~~~~----~L~~L~l~~n~l 392 (968)
T PLN00113 331 --------LPRLQVLQLWSNKFSGEIPK-NLGKHNNLTVLDLSTNNLTG-----EIPEGLCSSG----NLFKLILFSNSL 392 (968)
T ss_pred --------CCCCCEEECcCCCCcCcCCh-HHhCCCCCcEEECCCCeeEe-----eCChhHhCcC----CCCEEECcCCEe
Confidence 14566666666664444554 34556667777776654221 2222222222 344555555554
Q ss_pred CccccCcCccccccCceeeecCCCccccccccccccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCC
Q 000803 1025 LTCLSSGIHLLEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQ 1104 (1277)
Q Consensus 1025 l~~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~ 1104 (1277)
.+.+|..+..+++|+.|++++|+..+.+|..+.+ .++|+.|++++|...+.+|..+..++
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~--------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~ 452 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK--------------------LPLVYFLDISNNNLQGRINSRKWDMP 452 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhc--------------------CCCCCEEECcCCcccCccChhhccCC
Confidence 4555555556666666776666554444443322 23456777777766666666667778
Q ss_pred CcCEEeccCCCCcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhhccCCccc
Q 000803 1105 SLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASL 1184 (1277)
Q Consensus 1105 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~L 1184 (1277)
+|+.|++++|.....+|......+|+.|++++ +.+....+..+.++++|+.|++++|.....+|... ..+++|
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~----n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L 525 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSFGSKRLENLDLSR----NQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDEL---SSCKKL 525 (968)
T ss_pred CCcEEECcCceeeeecCcccccccceEEECcC----CccCCccChhhhhhhccCEEECcCCcceeeCChHH---cCccCC
Confidence 88888888877666666655556788888743 44554555568899999999999998777888754 567899
Q ss_pred ceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCCCC-CCCCccceeeccCChhh
Q 000803 1185 TFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEV-GLPSSLLSLEIKNCPKL 1243 (1277)
Q Consensus 1185 ~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~~~L~~L~i~~c~~L 1243 (1277)
++|++++|.....+| ..+..+++|+.|++++|.....+|.. .-.++|+.+++++|+..
T Consensus 526 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~ 584 (968)
T PLN00113 526 VSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH 584 (968)
T ss_pred CEEECCCCcccccCC-hhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce
Confidence 999999997666666 67899999999999999777778863 23578999999999754
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2e-28 Score=253.28 Aligned_cols=262 Identities=23% Similarity=0.275 Sum_probs=143.5
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecC
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRG 632 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 632 (1277)
..|..|.+++|.+..+-+.+.++..|.+|++++|.+.++|.+|+.+..++.|+.++ +++.++|+.++.+.+|++|++++
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~-n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSH-NKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhccc-chHhhccHHHhhhhhhhhhhccc
Confidence 34555666666666665566666666666666666666666666666666666666 35666666666666666666666
Q ss_pred ccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCCceEEEe
Q 000803 633 AILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEALSLEW 712 (1277)
Q Consensus 633 ~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 712 (1277)
|. +..+|.+|+.+..|..|+..++.+.+. +..+..+.++..+. +..+ +++
T Consensus 124 n~-~~el~~~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~--~~~n--------------------~l~------ 173 (565)
T KOG0472|consen 124 NE-LKELPDSIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLD--LEGN--------------------KLK------ 173 (565)
T ss_pred cc-eeecCchHHHHhhhhhhhccccccccC-chHHHHHHHHHHhh--cccc--------------------chh------
Confidence 65 566666666666666666666555543 44444454444432 0000 000
Q ss_pred cCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCCCCCcccCCCCCCCccEEEEcCCCCCCCCCCCCCCCCCceeeec
Q 000803 713 GSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCTSLPSLGLLSSLRDLTIK 792 (1277)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~ 792 (1277)
...+..-.+..|++|+...+....+|..++. +.+|..|++..| .+..+|.++.+..|++|.+.
T Consensus 174 --------------~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~--l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 174 --------------ALPENHIAMKRLKHLDCNSNLLETLPPELGG--LESLELLYLRRN-KIRFLPEFPGCSLLKELHVG 236 (565)
T ss_pred --------------hCCHHHHHHHHHHhcccchhhhhcCChhhcc--hhhhHHHHhhhc-ccccCCCCCccHHHHHHHhc
Confidence 0001111134455555555666667776665 677777777776 45566777777777777775
Q ss_pred cCCCceEeccccccccccCCCcccceeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCCCCCC--ccE
Q 000803 793 RMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPELLPS--LKT 870 (1277)
Q Consensus 793 ~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~l~~--L~~ 870 (1277)
. +.++.++.+... .+++|.+|++.+. ++.+...+.. .+.+|+.|+++++ .++ .+|..+.+ |+.
T Consensus 237 ~-N~i~~lpae~~~-----~L~~l~vLDLRdN-klke~Pde~c------lLrsL~rLDlSNN-~is-~Lp~sLgnlhL~~ 301 (565)
T KOG0472|consen 237 E-NQIEMLPAEHLK-----HLNSLLVLDLRDN-KLKEVPDEIC------LLRSLERLDLSNN-DIS-SLPYSLGNLHLKF 301 (565)
T ss_pred c-cHHHhhHHHHhc-----ccccceeeecccc-ccccCchHHH------HhhhhhhhcccCC-ccc-cCCcccccceeee
Confidence 4 566665554432 2444444444432 1222221111 3455666666666 454 44443333 344
Q ss_pred EEEeccc
Q 000803 871 LVVSKCQ 877 (1277)
Q Consensus 871 L~l~~~~ 877 (1277)
|.+.|++
T Consensus 302 L~leGNP 308 (565)
T KOG0472|consen 302 LALEGNP 308 (565)
T ss_pred hhhcCCc
Confidence 4444443
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=6.3e-25 Score=251.54 Aligned_cols=459 Identities=24% Similarity=0.261 Sum_probs=272.5
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
..+.-+|++||+++|.+..+|..+..+.+|+.|+++.|.|...|.+++++.+|++|+|.+ +.+..+|.++..+++|++|
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYL 119 (1081)
T ss_pred hhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhccccc
Confidence 333445999999999999999999999999999999999999999999999999999987 6889999999999999999
Q ss_pred eecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCCce
Q 000803 629 DIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEAL 708 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 708 (1277)
++++|. ...+|.-+..++.+..+...+|.... .+++.. ++.+
T Consensus 120 dlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~----~lg~~~---------------------------------ik~~ 161 (1081)
T KOG0618|consen 120 DLSFNH-FGPIPLVIEVLTAEEELAASNNEKIQ----RLGQTS---------------------------------IKKL 161 (1081)
T ss_pred ccchhc-cCCCchhHHhhhHHHHHhhhcchhhh----hhcccc---------------------------------chhh
Confidence 999987 77788888888887777665551110 011110 1111
Q ss_pred EEEecCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCCCCCcccCCCCCCCcc-EEEEcCCCCCCCCCCCCCCCCCc
Q 000803 709 SLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWIGDPLFSKMN-VLELDDCWNCTSLPSLGLLSSLR 787 (1277)
Q Consensus 709 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~-~L~L~~~~~~~~l~~l~~l~~L~ 787 (1277)
++..+. +. ..++..+ .+++ .|+|+.|... .-.+..+++|+
T Consensus 162 ~l~~n~----------------------------l~----~~~~~~i-----~~l~~~ldLr~N~~~--~~dls~~~~l~ 202 (1081)
T KOG0618|consen 162 DLRLNV----------------------------LG----GSFLIDI-----YNLTHQLDLRYNEME--VLDLSNLANLE 202 (1081)
T ss_pred hhhhhh----------------------------cc----cchhcch-----hhhheeeecccchhh--hhhhhhccchh
Confidence 111000 00 0111111 1222 3566555322 11233333444
Q ss_pred eeeeccCCCceEeccccccccccCCCcccceeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCCCCCC
Q 000803 788 DLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPELLPS 867 (1277)
Q Consensus 788 ~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~l~~ 867 (1277)
.|.... +.+..+ .+ .-|+|+.|+..+|+-.+ ..+
T Consensus 203 ~l~c~r-n~ls~l-------------------~~--------------------~g~~l~~L~a~~n~l~~-~~~----- 236 (1081)
T KOG0618|consen 203 VLHCER-NQLSEL-------------------EI--------------------SGPSLTALYADHNPLTT-LDV----- 236 (1081)
T ss_pred hhhhhh-cccceE-------------------Ee--------------------cCcchheeeeccCccee-ecc-----
Confidence 333321 111111 11 23455555555552211 110
Q ss_pred ccEEEEecccccccccCCCCcceEEEeccccccccccCCchhhhhhhcccccceeecCCCCccccccCcccccccccccc
Q 000803 868 LKTLVVSKCQKLKFSLSSYPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLLQTETISN 947 (1277)
Q Consensus 868 L~~L~l~~~~~l~~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~~ 947 (1277)
T Consensus 237 -------------------------------------------------------------------------------- 236 (1081)
T KOG0618|consen 237 -------------------------------------------------------------------------------- 236 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcceEEEEccCCCcCCChhhhhccccccceeEeeccCCcccccCCCC-CCcccceeeccccccceeccCCCCCc
Q 000803 948 ALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKL-PSSLKSLQIENLTLESLKIRDCPQLT 1026 (1277)
Q Consensus 948 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~sL~~L~l~~~~L~~L~l~~~~~l~ 1026 (1277)
.+.|.+|++++++.+. +..+| ++...+.+|+.|++.+|.. ..++.... ..+|+.|.+.+| .++
T Consensus 237 --~p~p~nl~~~dis~n~-l~~lp-~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-----------el~ 300 (1081)
T KOG0618|consen 237 --HPVPLNLQYLDISHNN-LSNLP-EWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-----------ELE 300 (1081)
T ss_pred --ccccccceeeecchhh-hhcch-HHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-----------hhh
Confidence 0113566777777766 66677 4556677777777776542 22221111 123333332222 233
Q ss_pred cccCcCccccccCceeeecCCCcccccccccc-----ccEEEecccCCcccccc--cCccCcccEEEeecccccccCcCC
Q 000803 1027 CLSSGIHLLEALEDLHIRNCPKLESIPKGLHK-----LRSIYIKKCPSLVSLAE--KGLPNTISHVTISYCEKLDALPNG 1099 (1277)
Q Consensus 1027 ~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~~-----L~~L~l~~c~~l~~l~~--~~~~~~L~~L~l~~~~~l~~lp~~ 1099 (1277)
.+|.....+.+|++|++..| .+..+|..+-. |+.|..+. ..+...+. +.....|+.|.+.+|..-...-..
T Consensus 301 yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~ 378 (1081)
T KOG0618|consen 301 YIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPV 378 (1081)
T ss_pred hCCCcccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcccccchhh
Confidence 34555545667777777776 35555542111 22222221 22333321 122235666666666555555555
Q ss_pred CCCCCCcCEEeccCCCCcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhhcc
Q 000803 1100 MHKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMM 1179 (1277)
Q Consensus 1100 l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~ 1179 (1277)
+.++.+||.|++++ +.+.+||. ..++++..|+.|++||| .+..+|... .
T Consensus 379 l~~~~hLKVLhLsy-NrL~~fpa--------------------------s~~~kle~LeeL~LSGN-kL~~Lp~tv---a 427 (1081)
T KOG0618|consen 379 LVNFKHLKVLHLSY-NRLNSFPA--------------------------SKLRKLEELEELNLSGN-KLTTLPDTV---A 427 (1081)
T ss_pred hccccceeeeeecc-cccccCCH--------------------------HHHhchHHhHHHhcccc-hhhhhhHHH---H
Confidence 66677777777766 45555554 35778888899999986 677777644 5
Q ss_pred CCcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCC-CCCCC-CccceeeccCChhhHHHhccCCCCCccc
Q 000803 1180 LPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFP-EVGLP-SSLLSLEIKNCPKLRKQCKRDRGKEWSK 1257 (1277)
Q Consensus 1180 ~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~-~~L~~L~i~~c~~L~~~~~~~~~~~w~~ 1257 (1277)
.+..|++|...++ ++..+| .+..+++|+.+|++.| +++.+. ....| ++|+.||++|++.+.- .....+.
T Consensus 428 ~~~~L~tL~ahsN-~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~l~~-----d~~~l~~ 498 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSN-QLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTRLVF-----DHKTLKV 498 (1081)
T ss_pred hhhhhHHHhhcCC-ceeech--hhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCccccc-----chhhhHH
Confidence 6777888887775 577777 5889999999999977 566543 33457 8999999999986421 1234556
Q ss_pred eeccceeEECCc
Q 000803 1258 IARIPCVKIDDK 1269 (1277)
Q Consensus 1258 ~~~i~~~~i~~~ 1269 (1277)
.+++...+|+-+
T Consensus 499 l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 499 LKSLSQMDITLN 510 (1081)
T ss_pred hhhhhheecccC
Confidence 666666666544
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=1.4e-21 Score=255.20 Aligned_cols=106 Identities=22% Similarity=0.423 Sum_probs=60.8
Q ss_pred cEEEeecccccccCcCCCCCCCCcCEEeccCCCCcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccc
Q 000803 1083 SHVTISYCEKLDALPNGMHKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSI 1162 (1277)
Q Consensus 1083 ~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l 1162 (1277)
+.|++++|..++.+|..+ ++++|+.|++++|+.+..+|. .+.+|+.|++++ +.++.+ |..+.++++|+.|++
T Consensus 805 ~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~----n~i~~i-P~si~~l~~L~~L~L 876 (1153)
T PLN03210 805 EHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSR----TGIEEV-PWWIEKFSNLSFLDM 876 (1153)
T ss_pred CEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCC----CCCccC-hHHHhcCCCCCEEEC
Confidence 444444444444454443 455555666665555555443 234455555522 233322 224667788888888
Q ss_pred cccCCCccCchhhhhccCCcccceeeecccccccccC
Q 000803 1163 EECHDAESFPDEEMRMMLPASLTFLILRRLSKLKYLS 1199 (1277)
Q Consensus 1163 ~~~~~l~~lp~~~~~~~~~~~L~~L~l~~~~~l~~l~ 1199 (1277)
++|+.+..+|... ..+++|+.+++++|.+|..++
T Consensus 877 ~~C~~L~~l~~~~---~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 877 NGCNNLQRVSLNI---SKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCcCccCccc---ccccCCCeeecCCCccccccc
Confidence 8888887777632 345667777777777776554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.85 E-value=2.7e-22 Score=217.64 Aligned_cols=263 Identities=21% Similarity=0.236 Sum_probs=178.0
Q ss_pred CcceEEEEccCCCcCCChhhhhccccccceeEeeccCCccc--ccCCCCCCcccceeeccccccceeccCCCCCccccCc
Q 000803 954 RNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKF--VTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLSSG 1031 (1277)
Q Consensus 954 ~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~--~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~l~~l~~~ 1031 (1277)
.+|.+|.|+.|. ++.+|...|.+++.|+.|++..|..-.. ..-.+ ..||++|.+..|.+..|+ -..
T Consensus 197 nsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqg-L~Sl~nlklqrN~I~kL~----------DG~ 264 (873)
T KOG4194|consen 197 NSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQG-LPSLQNLKLQRNDISKLD----------DGA 264 (873)
T ss_pred chheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcC-chhhhhhhhhhcCccccc----------Ccc
Confidence 478888899988 8899988898899999999988753211 11112 235555555554433332 123
Q ss_pred CccccccCceeeecCCCccccc-cccccccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCCCcCEEe
Q 000803 1032 IHLLEALEDLHIRNCPKLESIP-KGLHKLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLK 1110 (1277)
Q Consensus 1032 ~~~l~~L~~L~l~~c~~l~~~p-~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~ 1110 (1277)
|..+.+++.|+++.|+ +..+. .++.. .++|+.|++|+|..-..-+.++..+++|++|+
T Consensus 265 Fy~l~kme~l~L~~N~-l~~vn~g~lfg--------------------Lt~L~~L~lS~NaI~rih~d~WsftqkL~~Ld 323 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNR-LQAVNEGWLFG--------------------LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELD 323 (873)
T ss_pred eeeecccceeecccch-hhhhhcccccc--------------------cchhhhhccchhhhheeecchhhhcccceeEe
Confidence 3456677777777764 22221 12222 23557777777755444466777788888888
Q ss_pred ccCCCCcccccCCCC--CCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhhccCCcccceee
Q 000803 1111 IKECPSILSFSEEGF--PTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLI 1188 (1277)
Q Consensus 1111 l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~L~~L~ 1188 (1277)
+++ +.++.++++.+ +..|++|.+ ..|.+..+.+..|..+.+|+.|++++|.....+.+....+..+++|+.|+
T Consensus 324 Ls~-N~i~~l~~~sf~~L~~Le~LnL----s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 324 LSS-NRITRLDEGSFRVLSQLEELNL----SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ccc-cccccCChhHHHHHHHhhhhcc----cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 877 67888877665 467888888 44788888888899999999999999765443333332345588899999
Q ss_pred ecccccccccCccCCCCCCCCCceeccCCCCCCCCCCCCCCCccceeeccCChhhHHHhccCCCCCcc
Q 000803 1189 LRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGLPSSLLSLEIKNCPKLRKQCKRDRGKEWS 1256 (1277)
Q Consensus 1189 l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~w~ 1256 (1277)
+.++ +++.++..+|..|.+||+|++.+|+-.+.-|+..-+..|++|.+..-.-| +.|+-.|...|.
T Consensus 399 l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssfl-CDCql~Wl~qWl 464 (873)
T KOG4194|consen 399 LTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFL-CDCQLKWLAQWL 464 (873)
T ss_pred ecCc-eeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceE-EeccHHHHHHHH
Confidence 9997 79999999999999999999999954443354444567888876554333 356666666664
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=6.4e-23 Score=223.30 Aligned_cols=184 Identities=22% Similarity=0.285 Sum_probs=117.4
Q ss_pred ccccceeEeeccCCcccccCCCCCCcccceeeccccccceeccCCCCCccccCcCccccccCceeeecCCCccccccccc
Q 000803 978 NSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLH 1057 (1277)
Q Consensus 978 l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~ 1057 (1277)
+++|+.|++++.... ...+|.+|..|. +|..++++.+ ++..+|..+..+++|+.|++|+|. ++.+...
T Consensus 196 mtsL~vLhms~TqRT----l~N~Ptsld~l~----NL~dvDlS~N-~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~-- 263 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRT----LDNIPTSLDDLH----NLRDVDLSEN-NLPIVPECLYKLRNLRRLNLSGNK-ITELNMT-- 263 (1255)
T ss_pred chhhhhhhcccccch----hhcCCCchhhhh----hhhhcccccc-CCCcchHHHhhhhhhheeccCcCc-eeeeecc--
Confidence 444555555543211 123455555444 4445555432 455566666677778888888874 2221110
Q ss_pred cccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCCCcCEEeccCCCCcccccCCCCCCCCceEEEccc
Q 000803 1058 KLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGG 1137 (1277)
Q Consensus 1058 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~ 1137 (1277)
.+.-.+|++|++|.| .++.+|..+..++.|+.|.+.+ ++++ ..+
T Consensus 264 ------------------~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~-NkL~---FeG------------- 307 (1255)
T KOG0444|consen 264 ------------------EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANN-NKLT---FEG------------- 307 (1255)
T ss_pred ------------------HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhcc-Cccc---ccC-------------
Confidence 111235677788887 6888999999999999998866 3432 112
Q ss_pred cCccchhhhhhhcccccCCcccccccccCCCccCchhhhhccCCcccceeeecccccccccCccCCCCCCCCCceeccCC
Q 000803 1138 VDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDC 1217 (1277)
Q Consensus 1138 ~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c 1217 (1277)
+|.+++.+..|+.+...+| .++-+|++. .-+..|+.|.+.++ .|-.+| .++.-|+.|+.||+.+|
T Consensus 308 ---------iPSGIGKL~~Levf~aanN-~LElVPEgl---cRC~kL~kL~L~~N-rLiTLP-eaIHlL~~l~vLDlreN 372 (1255)
T KOG0444|consen 308 ---------IPSGIGKLIQLEVFHAANN-KLELVPEGL---CRCVKLQKLKLDHN-RLITLP-EAIHLLPDLKVLDLREN 372 (1255)
T ss_pred ---------CccchhhhhhhHHHHhhcc-ccccCchhh---hhhHHHHHhccccc-ceeech-hhhhhcCCcceeeccCC
Confidence 2346888899999998875 677788764 45667888877765 577777 57888888888888888
Q ss_pred CCCCCCC
Q 000803 1218 PNLTSFP 1224 (1277)
Q Consensus 1218 ~~l~~lp 1224 (1277)
|++-.-|
T Consensus 373 pnLVMPP 379 (1255)
T KOG0444|consen 373 PNLVMPP 379 (1255)
T ss_pred cCccCCC
Confidence 8875433
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=6.8e-24 Score=219.97 Aligned_cols=238 Identities=25% Similarity=0.298 Sum_probs=157.9
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
+.++..|.||++++|.+..+|.+++.+..++.|+.++|++.++|+.++.+.+|..|+.++ +.+.++|++|+.+..|..|
T Consensus 64 l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl 142 (565)
T KOG0472|consen 64 LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDL 142 (565)
T ss_pred hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhh
Confidence 456777888888888888888888888888888888888888888888888888888887 4677778888888888888
Q ss_pred eecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCCce
Q 000803 629 DIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEAL 708 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L 708 (1277)
+..+|. +.++|.+++.+.+|..|.+.++......+..+. ++.|++|. .+ ...-+..+..++.+.+|+.|
T Consensus 143 ~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld--~~-------~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 143 DATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLD--CN-------SNLLETLPPELGGLESLELL 211 (565)
T ss_pred hccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcc--cc-------hhhhhcCChhhcchhhhHHH
Confidence 777776 777777777777777777776665554333333 66666664 11 11122333445555556555
Q ss_pred EEEecCC-----CCCC--------cchHHHHHhhhcCCCccCccEEEEeeeCCCCCCcccCCCCCCCccEEEEcCCCCCC
Q 000803 709 SLEWGSQ-----FDNS--------RDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCT 775 (1277)
Q Consensus 709 ~l~~~~~-----~~~~--------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 775 (1277)
++..+.. +... ..+..+....+.+..++++..|++..++...+|..+.. +.+|++|++++| .+.
T Consensus 212 yL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN-~is 288 (565)
T KOG0472|consen 212 YLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNN-DIS 288 (565)
T ss_pred HhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH--hhhhhhhcccCC-ccc
Confidence 5543321 1000 01122223334455677888888888888888887765 677888888887 445
Q ss_pred CCC-CCCCCCCCceeeeccCCCceEeccc
Q 000803 776 SLP-SLGLLSSLRDLTIKRMTNLKSIGCE 803 (1277)
Q Consensus 776 ~l~-~l~~l~~L~~L~l~~~~~l~~i~~~ 803 (1277)
.+| .+|++ .|+.|.+.+ +-++.+-.+
T Consensus 289 ~Lp~sLgnl-hL~~L~leG-NPlrTiRr~ 315 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEG-NPLRTIRRE 315 (565)
T ss_pred cCCcccccc-eeeehhhcC-CchHHHHHH
Confidence 555 78888 888888877 345544433
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=3.7e-22 Score=229.06 Aligned_cols=106 Identities=26% Similarity=0.340 Sum_probs=86.9
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
+..+.+|+.|+++.|.|..+|.+++++++|+||.|.+|.+..+|.++..+++|++||+++ +.....|..+..+..+..+
T Consensus 64 it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl~i~~lt~~~~~ 142 (1081)
T KOG0618|consen 64 ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSF-NHFGPIPLVIEVLTAEEEL 142 (1081)
T ss_pred hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccch-hccCCCchhHHhhhHHHHH
Confidence 556789999999999999999999999999999999999999999999999999999999 4788899999999999999
Q ss_pred eecCccccccCCCCCCCCCCCcccCceeeCCC
Q 000803 629 DIRGAILLKEMPFGMKELKNLQTLSNFVVGKG 660 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~ 660 (1277)
..++|..+..++. +. ++.+++..+...
T Consensus 143 ~~s~N~~~~~lg~----~~-ik~~~l~~n~l~ 169 (1081)
T KOG0618|consen 143 AASNNEKIQRLGQ----TS-IKKLDLRLNVLG 169 (1081)
T ss_pred hhhcchhhhhhcc----cc-chhhhhhhhhcc
Confidence 8888843444432 22 455554444433
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.81 E-value=1.9e-22 Score=219.73 Aligned_cols=108 Identities=22% Similarity=0.305 Sum_probs=82.8
Q ss_pred CCeeeEEecCCCCC--CCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeee
Q 000803 552 FKKLRLLSLQGYYI--GELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLD 629 (1277)
Q Consensus 552 l~~Lr~L~L~~~~i--~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 629 (1277)
++-.|-.|+++|.+ ..+|.++..+..++.|.|..+.+..+|+.++.|++|+.|.+++ +.+..+...+..|+.||.+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSDLPRLRSVI 84 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhccchhhHHHh
Confidence 45567778888876 3578888888888888888888888888888888888888888 46777777788888888888
Q ss_pred ecCccc-cccCCCCCCCCCCCcccCceeeCCC
Q 000803 630 IRGAIL-LKEMPFGMKELKNLQTLSNFVVGKG 660 (1277)
Q Consensus 630 l~~~~~-l~~~p~~i~~L~~L~~L~~~~~~~~ 660 (1277)
+..|+. -..+|.+|.+|..|.+|++++|...
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~ 116 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR 116 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh
Confidence 877751 2357777888888888877766543
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-20 Score=204.59 Aligned_cols=339 Identities=18% Similarity=0.181 Sum_probs=176.4
Q ss_pred eEEecCCCCCCCC-CcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccc-hhhccccCcCeeeecCc
Q 000803 556 RLLSLQGYYIGEL-PIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLP-SKIRRLINLCHLDIRGA 633 (1277)
Q Consensus 556 r~L~L~~~~i~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 633 (1277)
+.||+++|.+.++ +..|.++.+|+.+++.+|.++.+|...+-..+|+.|+|.+| .+..+- +.+..++.||.|||+.|
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLSrN 159 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLSRN 159 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhhhc
Confidence 4455555555444 34445555555555555555555554444445555555552 333332 23444555555555555
Q ss_pred cccccCCCC-CCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCCceEEEe
Q 000803 634 ILLKEMPFG-MKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEALSLEW 712 (1277)
Q Consensus 634 ~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 712 (1277)
. +.++|.. +..-.++++|++..|.+.......|..+.+|..|+ +.-+.+ .......++++++|++|++..
T Consensus 160 ~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk--LsrNri------ttLp~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 160 L-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK--LSRNRI------TTLPQRSFKRLPKLESLDLNR 230 (873)
T ss_pred h-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee--cccCcc------cccCHHHhhhcchhhhhhccc
Confidence 4 4444432 33334455555555554444334444444443332 111111 111112244455555555544
Q ss_pred cCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCCCCCcccCCCCCCCccEEEEcCCCCCC-CCCCCCCCCCCceeee
Q 000803 713 GSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCT-SLPSLGLLSSLRDLTI 791 (1277)
Q Consensus 713 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~l~~l~~L~~L~l 791 (1277)
+.. .....-.+..+++|+.|.+..|+...+.+..+. -+.++++|+|+.|.... .-.++-.+..|+.|++
T Consensus 231 N~i---------rive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy-~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~l 300 (873)
T KOG4194|consen 231 NRI---------RIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY-GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDL 300 (873)
T ss_pred cce---------eeehhhhhcCchhhhhhhhhhcCcccccCccee-eecccceeecccchhhhhhcccccccchhhhhcc
Confidence 321 011122456677788888888777766554432 26788888888874422 1226777888888888
Q ss_pred ccCCCceEeccccccccccCCCcccceeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCC----CCCC
Q 000803 792 KRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPE----LLPS 867 (1277)
Q Consensus 792 ~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~----~l~~ 867 (1277)
++ +.++.|..+.+. ..++|+.|+++++ .++ .+++ .+..
T Consensus 301 S~-NaI~rih~d~Ws-----------------------------------ftqkL~~LdLs~N-~i~-~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 301 SY-NAIQRIHIDSWS-----------------------------------FTQKLKELDLSSN-RIT-RLDEGSFRVLSQ 342 (873)
T ss_pred ch-hhhheeecchhh-----------------------------------hcccceeEecccc-ccc-cCChhHHHHHHH
Confidence 76 667666544322 2455555666555 444 3332 1345
Q ss_pred ccEEEEecccccc---cccCCCCcceEEEeccccccccccCCchhhhhhhcccccceeecCCCCccccccCccccccccc
Q 000803 868 LKTLVVSKCQKLK---FSLSSYPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLLQTET 944 (1277)
Q Consensus 868 L~~L~l~~~~~l~---~~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~l~~l~~~~ 944 (1277)
|++|.++++..-. ..+..+.+|++|++....-..... . ....+..
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE--------------------D----aa~~f~g-------- 390 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE--------------------D----AAVAFNG-------- 390 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe--------------------c----chhhhcc--------
Confidence 5555555554322 122233444444433211100000 0 0000111
Q ss_pred cccccccccCcceEEEEccCCCcCCChhhhhccccccceeEeeccCCcc
Q 000803 945 ISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLK 993 (1277)
Q Consensus 945 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~ 993 (1277)
.++|+.|++.+|+ ++.+|...|..+.+|++|++.+|....
T Consensus 391 --------l~~LrkL~l~gNq-lk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 391 --------LPSLRKLRLTGNQ-LKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred --------chhhhheeecCce-eeecchhhhccCcccceecCCCCccee
Confidence 2689999999998 999999999999999999999986544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=171.32 Aligned_cols=123 Identities=22% Similarity=0.290 Sum_probs=94.3
Q ss_pred eeeEEecCCCCCCCCC-cCCCCCCccceeeccCCccccc-cccccccccCcEEEecCCcCccccchh-hccccCcCeeee
Q 000803 554 KLRLLSLQGYYIGELP-IPFEDLRLLRYLNLADTDIRSL-PESSCSLLNLEILILRNCSSLIKLPSK-IRRLINLCHLDI 630 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 630 (1277)
.-..++|..|.|+.+| .+|+.+++||.||||+|.|+.+ |..|..|..|-.|-+.++++|+.+|.. |+.|..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 4456788888888886 5688888888888888888877 888888888888877776788888875 688888888888
Q ss_pred cCccccccCCCC-CCCCCCCcccCceeeCCCCCCCCChhccccccccC
Q 000803 631 RGAILLKEMPFG-MKELKNLQTLSNFVVGKGGETASGLEDLKILKFLS 677 (1277)
Q Consensus 631 ~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~ 677 (1277)
.-|. +.-++.+ +..|.+|..|.++.+.+.......+..+..++.+.
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 7776 5555554 77788888888888877665445666666666553
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.49 E-value=1.3e-13 Score=165.97 Aligned_cols=79 Identities=23% Similarity=0.243 Sum_probs=62.2
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecC
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRG 632 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 632 (1277)
..-.+|+|+++.++.+|..+. .+|+.|++++|+++.+|.. +++|++|++++| .++.+|.. .++|++|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccC
Confidence 346688999999999998776 4899999999999999863 578899999885 77788753 35778888888
Q ss_pred ccccccCCC
Q 000803 633 AILLKEMPF 641 (1277)
Q Consensus 633 ~~~l~~~p~ 641 (1277)
|. +..+|.
T Consensus 272 N~-L~~Lp~ 279 (788)
T PRK15387 272 NP-LTHLPA 279 (788)
T ss_pred Cc-hhhhhh
Confidence 76 666654
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.47 E-value=2.9e-13 Score=163.09 Aligned_cols=255 Identities=27% Similarity=0.323 Sum_probs=146.9
Q ss_pred ccEEEEeeeCCCCCCcccCCCCCCCccEEEEcCCCCCCCCCCCCCCCCCceeeeccCCCceEeccccccccccCCCcccc
Q 000803 738 VKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCTSLPSLGLLSSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLE 817 (1277)
Q Consensus 738 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~ 817 (1277)
-..|+++++....+|..+. ++|+.|.+.+| .++.+|.+ +++|++|++++ +.++.++. .+++|+
T Consensus 203 ~~~LdLs~~~LtsLP~~l~----~~L~~L~L~~N-~Lt~LP~l--p~~Lk~LdLs~-N~LtsLP~---------lp~sL~ 265 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP----AHITTLVIPDN-NLTSLPAL--PPELRTLEVSG-NQLTSLPV---------LPPGLL 265 (788)
T ss_pred CcEEEcCCCCCCcCCcchh----cCCCEEEccCC-cCCCCCCC--CCCCcEEEecC-CccCcccC---------cccccc
Confidence 4456677776777776552 46778888776 45556643 47788888876 45555431 134555
Q ss_pred eeeeccCccccccccccccccccccCCcccEEeeecCCCCccCCCCCCCCccEEEEecccccccccCCCCcceEEEeccc
Q 000803 818 ILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPELLPSLKTLVVSKCQKLKFSLSSYPMLCRLEADEC 897 (1277)
Q Consensus 818 ~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~~p~~l~~L~~L~l~~~~~l~~~~~~~~~L~~L~~~~~ 897 (1277)
.|.+.++. +..+. . .++.|+.|++++| +++ .+|..+++|+.|++++|..... +.
T Consensus 266 ~L~Ls~N~-L~~Lp----~-----lp~~L~~L~Ls~N-~Lt-~LP~~p~~L~~LdLS~N~L~~L--p~------------ 319 (788)
T PRK15387 266 ELSIFSNP-LTHLP----A-----LPSGLCKLWIFGN-QLT-SLPVLPPGLQELSVSDNQLASL--PA------------ 319 (788)
T ss_pred eeeccCCc-hhhhh----h-----chhhcCEEECcCC-ccc-cccccccccceeECCCCccccC--CC------------
Confidence 55554431 21111 0 2345666777666 565 5565556666666665521110 00
Q ss_pred cccccccCCchhhhhhhcccccceeecCCCCccccccCccccccccccccccccccCcceEEEEccCCCcCCChhhhhcc
Q 000803 898 KELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLLQTETISNALDFFPRNLRYLIISEISTLRSLPEEIMDN 977 (1277)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 977 (1277)
.|.+|+.|++++|. +..+|. .
T Consensus 320 ------------------------------------------------------lp~~L~~L~Ls~N~-L~~LP~----l 340 (788)
T PRK15387 320 ------------------------------------------------------LPSELCKLWAYNNQ-LTSLPT----L 340 (788)
T ss_pred ------------------------------------------------------CcccccccccccCc-cccccc----c
Confidence 02345555555554 445553 1
Q ss_pred ccccceeEeeccCCcccccCCCCCCcccceeeccccccceeccCCCCCccccCcCccccccCceeeecCCCccccccccc
Q 000803 978 NSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLH 1057 (1277)
Q Consensus 978 l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~ 1057 (1277)
..+|+.|++++|. ++.++ .+|.+|+.|.+.+|.|. .+|. .+++|+.|++++|. +..+|....
T Consensus 341 p~~Lq~LdLS~N~-Ls~LP--~lp~~L~~L~Ls~N~L~-----------~LP~---l~~~L~~LdLs~N~-Lt~LP~l~s 402 (788)
T PRK15387 341 PSGLQELSVSDNQ-LASLP--TLPSELYKLWAYNNRLT-----------SLPA---LPSGLKELIVSGNR-LTSLPVLPS 402 (788)
T ss_pred ccccceEecCCCc-cCCCC--CCCcccceehhhccccc-----------cCcc---cccccceEEecCCc-ccCCCCccc
Confidence 2356666666643 33333 23444444444443322 2332 23457777777764 555666666
Q ss_pred cccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCCCcCEEeccCCCC
Q 000803 1058 KLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIKECPS 1116 (1277)
Q Consensus 1058 ~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~ 1116 (1277)
+|+.|+++++ .++.+|. .+.+|+.|++++| .++.+|..+.++++|+.|++++|+.
T Consensus 403 ~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 403 ELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred CCCEEEccCC-cCCCCCc--chhhhhhhhhccC-cccccChHHhhccCCCeEECCCCCC
Confidence 6777777774 3566653 3457788888887 5678888888899999999988653
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=6e-11 Score=155.80 Aligned_cols=292 Identities=15% Similarity=0.181 Sum_probs=181.6
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSIS 219 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~ 219 (1277)
.+.+|-|+.-.+.+ ... ...+++.|+|++|.||||++.++... ++.++|+++.. +.+...+.
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~--------~~~~~w~~l~~~d~~~~~f~ 75 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG--------KNNLGWYSLDESDNQPERFA 75 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh--------CCCeEEEecCcccCCHHHHH
Confidence 34567777555544 221 34689999999999999999998752 22689999864 44666677
Q ss_pred HHHHHHhcCCCCC-------------CCcHHHHHHHHHHhhc--CceEEEEecCcccccHHhHHhhhccccc-CCCCcEE
Q 000803 220 KALLESITSATCD-------------LKTVDEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPFLA-AAPNSKM 283 (1277)
Q Consensus 220 ~~il~~l~~~~~~-------------~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~~s~i 283 (1277)
..++..+...... ..+...+...+-..+. +.+++||+||+...+......+...+.. ...+.++
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~l 155 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTL 155 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEE
Confidence 7777777422111 0122223333323332 6799999999976543333434444443 3456788
Q ss_pred EEEccccccccc--c-CCCceeecC----CCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhh
Q 000803 284 IITTRNSHVAST--M-GPIDHYNLE----HLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGL 356 (1277)
Q Consensus 284 ivTtr~~~v~~~--~-~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 356 (1277)
|||||...-... . .......++ +|+.+|+.++|...... +...+...+|++.|+|.|+++..++..
T Consensus 156 v~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-------~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 156 VVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-------PIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred EEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-------CCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 899998422111 0 111234555 99999999999765531 112455678999999999999998877
Q ss_pred hcCCChhhHHHHHhhcccCCCC--CCChHHHHH-HhhhcCChhhhHHHhHhcccCCCceeChHHHHHHHHhCCccccCCC
Q 000803 357 LRTTTYDMWDDILDSKIWDLPR--QSSILPVLR-LSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSN 433 (1277)
Q Consensus 357 L~~~~~~~w~~~l~~~~~~~~~--~~~i~~~l~-~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~ 433 (1277)
++..... ..... +.+.. ...+...+. -.|+.||++.+..+...|+++ .|+.+..- .+...
T Consensus 229 ~~~~~~~-~~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~~--- 291 (903)
T PRK04841 229 ARQNNSS-LHDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTGE--- 291 (903)
T ss_pred HhhCCCc-hhhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcCC---
Confidence 6544210 00111 11111 134555543 348999999999999999996 33432221 11111
Q ss_pred hhhHHHHHHHHHHHHHhCCCccc-cCCCCCccchhHHHHHHHHHhc
Q 000803 434 NEQLKDLGSQCFHDLVSRSIFQR-TGFGSSKFAMHDLVHALAQLVS 478 (1277)
Q Consensus 434 ~~~~~~~~~~~~~~L~~~~li~~-~~~~~~~~~mhdlv~~~~~~~~ 478 (1277)
+.+...+++|.+.+++.. .+.+...|+.|++++++.+...
T Consensus 292 -----~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 -----ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -----CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 124567999999999653 3334457889999999987664
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.32 E-value=8.3e-13 Score=163.14 Aligned_cols=300 Identities=26% Similarity=0.302 Sum_probs=187.9
Q ss_pred CCCeeeEEecCCCC--CCCCCc-CCCCCCccceeeccCC-ccccccccccccccCcEEEecCCcCccccchhhccccCcC
Q 000803 551 KFKKLRLLSLQGYY--IGELPI-PFEDLRLLRYLNLADT-DIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLC 626 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~--i~~lp~-~~~~l~~Lr~L~L~~~-~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 626 (1277)
..+.|+.|-+.+|. +..++. .|..+++||+|||++| .+.+||++|+.|.+||+|++++ +.+..+|.++++|.+|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhh
Confidence 34479999999886 667764 4788999999999977 6789999999999999999999 68999999999999999
Q ss_pred eeeecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccCceeeecCccCCCChhhhhhhccccCCCCC
Q 000803 627 HLDIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLE 706 (1277)
Q Consensus 627 ~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~ 706 (1277)
||++..+..+..+|..+..|.+|++|.++..... .....+.++.+|+.|. .+.+..... .....+..+..|.
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLR 693 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHH
Confidence 9999998866677666777999999998877622 2245566777777665 343321110 0111122223333
Q ss_pred ceEEEecCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCCCCCc-ccCC---CC-CCCccEEEEcCCCCCCCCCCCC
Q 000803 707 ALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPL-WIGD---PL-FSKMNVLELDDCWNCTSLPSLG 781 (1277)
Q Consensus 707 ~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~---~~-l~~L~~L~L~~~~~~~~l~~l~ 781 (1277)
++...-.. ...........+..+.+|+.|.+.++.+..... |... .. |+++.++.+.+|.....+.+..
T Consensus 694 ~~~~~l~~------~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~ 767 (889)
T KOG4658|consen 694 SLLQSLSI------EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL 767 (889)
T ss_pred HHhHhhhh------cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh
Confidence 22111100 000112233455667888888888887754332 3221 11 4567777777776666666666
Q ss_pred CCCCCceeeeccCCCceEeccccccc----cccCCCccccee-eeccCccccccccccccccccccCCcccEEeeecCCC
Q 000803 782 LLSSLRDLTIKRMTNLKSIGCEFFGK----CFSEPFQSLEIL-SFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPE 856 (1277)
Q Consensus 782 ~l~~L~~L~l~~~~~l~~i~~~~~~~----~~~~~f~~L~~L-~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~ 856 (1277)
..|+|+.|.+..|..++.+.+..-.. ....+|+++..+ .+.+.+++..+..... .+++|+.+.+..||+
T Consensus 768 f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l------~~~~l~~~~ve~~p~ 841 (889)
T KOG4658|consen 768 FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPL------SFLKLEELIVEECPK 841 (889)
T ss_pred ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEeccc------CccchhheehhcCcc
Confidence 77888888888887776654332110 012345555555 3555554444431111 355566666666665
Q ss_pred CccCCCCCCCCccEEEEecc
Q 000803 857 LSGKVPELLPSLKTLVVSKC 876 (1277)
Q Consensus 857 L~~~~p~~l~~L~~L~l~~~ 876 (1277)
+. . +|.+.++.+.+|
T Consensus 842 l~-~----~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 842 LG-K----LPLLSTLTIVGC 856 (889)
T ss_pred cc-c----Cccccccceecc
Confidence 54 2 334444444444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.31 E-value=4.5e-12 Score=154.28 Aligned_cols=180 Identities=19% Similarity=0.325 Sum_probs=87.2
Q ss_pred ccCceeeecCCCccccccccc-cccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCCCcCEEeccCCC
Q 000803 1037 ALEDLHIRNCPKLESIPKGLH-KLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIKECP 1115 (1277)
Q Consensus 1037 ~L~~L~l~~c~~l~~~p~~l~-~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~ 1115 (1277)
+|+.|++++|. +..+|..++ +|+.|++++ +.+..+|. .++++|+.|++++| .+..+|..+. ++|+.|++++ +
T Consensus 242 ~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~-N~L~~LP~-~l~~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~-N 314 (754)
T PRK15370 242 TIQEMELSINR-ITELPERLPSALQSLDLFH-NKISCLPE-NLPEELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS-N 314 (754)
T ss_pred cccEEECcCCc-cCcCChhHhCCCCEEECcC-CccCcccc-ccCCCCcEEECCCC-ccccCcccch--hhHHHHHhcC-C
Confidence 45555555543 233443222 345555542 34444432 23345555555555 3444444332 3455555555 2
Q ss_pred CcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhhccCCcccceeeecccccc
Q 000803 1116 SILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKL 1195 (1277)
Q Consensus 1116 ~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~L~~L~l~~~~~l 1195 (1277)
.+..+|. ..+++|+.|++++ +.++.++.. + .++|+.|++++| .+..+|.. .+++|++|++++| ++
T Consensus 315 ~Lt~LP~-~l~~sL~~L~Ls~----N~Lt~LP~~-l--~~sL~~L~Ls~N-~L~~LP~~-----lp~~L~~LdLs~N-~L 379 (754)
T PRK15370 315 SLTALPE-TLPPGLKTLEAGE----NALTSLPAS-L--PPELQVLDVSKN-QITVLPET-----LPPTITTLDVSRN-AL 379 (754)
T ss_pred ccccCCc-cccccceeccccC----CccccCChh-h--cCcccEEECCCC-CCCcCChh-----hcCCcCEEECCCC-cC
Confidence 3444443 2334555555522 223322211 1 246666666665 34455542 3456777777766 45
Q ss_pred cccCccCCCCCCCCCceeccCCCCCCCCCCCC-----CCCccceeeccCChh
Q 000803 1196 KYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVG-----LPSSLLSLEIKNCPK 1242 (1277)
Q Consensus 1196 ~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~-----~~~~L~~L~i~~c~~ 1242 (1277)
..+|. .+. .+|+.|++++| +++.+|... ..+++..|++.++|-
T Consensus 380 t~LP~-~l~--~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 380 TNLPE-NLP--AALQIMQASRN-NLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCH-hHH--HHHHHHhhccC-CcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 55652 222 35677777776 555665411 124566677776663
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.28 E-value=8.5e-14 Score=128.17 Aligned_cols=127 Identities=28% Similarity=0.288 Sum_probs=106.0
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCc-cccchhhccccCcCe
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSL-IKLPSKIRRLINLCH 627 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~ 627 (1277)
+..+.+|.+|++.+|.++++|.+++.+..||.|+++-|++..+|..|+.++-|++|||.+|+.- ..+|..|..|+.|+-
T Consensus 52 ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlra 131 (264)
T KOG0617|consen 52 IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRA 131 (264)
T ss_pred HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999885432 468888888999999
Q ss_pred eeecCccccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccccccccC
Q 000803 628 LDIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLS 677 (1277)
Q Consensus 628 L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~~L~~L~ 677 (1277)
|++++|. .+.+|.++++|++||.|.+..+...+. |..++.|..|+.|.
T Consensus 132 lyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelh 179 (264)
T KOG0617|consen 132 LYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELH 179 (264)
T ss_pred HHhcCCC-cccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHh
Confidence 9999887 788899999999999998887776553 66677777666654
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=1.8e-11 Score=149.10 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=75.3
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecC
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRG 632 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 632 (1277)
.+..+|+++++.++.+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .++.+|..+. .+|+.|++++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 457889999999999998775 589999999999999998775 59999999985 6888998664 4799999999
Q ss_pred ccccccCCCCCCCCCCCcccCcee
Q 000803 633 AILLKEMPFGMKELKNLQTLSNFV 656 (1277)
Q Consensus 633 ~~~l~~~p~~i~~L~~L~~L~~~~ 656 (1277)
|. +..+|..+. ++|++|++..
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLFH 271 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECcC
Confidence 87 777876553 3566665543
No 23
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.25 E-value=1.8e-09 Score=126.41 Aligned_cols=299 Identities=14% Similarity=0.081 Sum_probs=174.6
Q ss_pred CCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 140 TEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 140 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.+..++||+++++++...+...... .....+.|+|++|+|||++++.++++..... ..-..+++++....+...++
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~--~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIA--VKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEECCcCCCHHHHH
Confidence 3457999999999999988543211 3345678999999999999999998653322 22346777777777788899
Q ss_pred HHHHHHhcCCCC--CCCcHHHHHHHHHHhhc--CceEEEEecCccccc----HHhHHhhhcccccCCCCcE--EEEEccc
Q 000803 220 KALLESITSATC--DLKTVDEVQVQLKKAVD--GKRFLLVLDDVWNED----YSLWVDLKAPFLAAAPNSK--MIITTRN 289 (1277)
Q Consensus 220 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~~s~--iivTtr~ 289 (1277)
.+++.++..... ...+.+++...+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ +|.++..
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~ 182 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECC
Confidence 999999875322 22345666667777664 457899999997632 1223333332222 22333 5666665
Q ss_pred cccccccC-------CCceeecCCCCHHHHHHHHHHhhcCCC--CCCchhhHHHHHHHHHhhcCCchHHHHHHHhhh--c
Q 000803 290 SHVASTMG-------PIDHYNLEHLLDDDCWSIFKTHAFEGR--DHNALEISESFRKKVVGKCGGLPLAAKTLGGLL--R 358 (1277)
Q Consensus 290 ~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L--~ 358 (1277)
..+..... ....+.+.+++.++..+++..++-.+. ..-.....+.+++......|..+.|+.++-... +
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 44332211 124578999999999999988763221 112223334444444444566778877764322 1
Q ss_pred ---C--C-ChhhHHHHHhhcccCCCCCCChHHHHHHhhhcCChhhhHHHhHhccc-CC-CceeChHHHHH--HHHhCCcc
Q 000803 359 ---T--T-TYDMWDDILDSKIWDLPRQSSILPVLRLSYHHLPSHLKRCFAYCAIF-PK-DFEFDEKELVF--LWIAGGII 428 (1277)
Q Consensus 359 ---~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f-p~-~~~i~~~~li~--~w~a~g~i 428 (1277)
+ . +.+++..+.+.. -.....-.+..||.+.|..+..++-. .. ...+....+.. ..+++.+-
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~ 333 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELG 333 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcC
Confidence 1 1 455665555432 12234556889999988776655422 21 12344444432 22332211
Q ss_pred ccCCChhhHHHHHHHHHHHHHhCCCccc
Q 000803 429 RQSSNNEQLKDLGSQCFHDLVSRSIFQR 456 (1277)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~L~~~~li~~ 456 (1277)
...- -......|+.+|...++|..
T Consensus 334 ~~~~----~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 334 YEPR----THTRFYEYINKLDMLGIINT 357 (394)
T ss_pred CCcC----cHHHHHHHHHHHHhcCCeEE
Confidence 1100 11223557788888888764
No 24
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=9.8e-13 Score=121.27 Aligned_cols=108 Identities=25% Similarity=0.253 Sum_probs=68.3
Q ss_pred CCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeee
Q 000803 551 KFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDI 630 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 630 (1277)
.+.++..|.|++|.++.+|..|..|.+|++|++++|+|+++|.+|+.|++|+.|+++- +.+..+|.+||.++.|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc
Confidence 3455666667777777777777777777777777777777777777777777777765 456666777777777777776
Q ss_pred cCcccc-ccCCCCCCCCCCCcccCceeeCC
Q 000803 631 RGAILL-KEMPFGMKELKNLQTLSNFVVGK 659 (1277)
Q Consensus 631 ~~~~~l-~~~p~~i~~L~~L~~L~~~~~~~ 659 (1277)
.+|..- ..+|..|..|+.|+.|.+..+.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndf 139 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDF 139 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCc
Confidence 666521 23454455555555555444433
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.20 E-value=2.9e-13 Score=141.81 Aligned_cols=286 Identities=19% Similarity=0.223 Sum_probs=172.1
Q ss_pred ccCcceEEEEccCCCcCCChhhhhccccccceeEeeccCCcccccCCCCCCcccceeeccccccceeccCCCCCccccC-
Q 000803 952 FPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLSS- 1030 (1277)
Q Consensus 952 ~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~l~~l~~- 1030 (1277)
+|+....++|..|. ++.+|.+.|..+++|+.|+|++|. ++.+ .|..++.|. ++..|.+.++..++.+|.
T Consensus 65 LP~~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~-Is~I----~p~AF~GL~----~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNN-ISFI----APDAFKGLA----SLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CCCcceEEEeccCC-cccCChhhccchhhhceecccccc-hhhc----ChHhhhhhH----hhhHHHhhcCCchhhhhhh
Confidence 47888999999998 999999999999999999999975 3322 233334343 455666666667777764
Q ss_pred cCccccccCceeeecCCCccccc----cccccccEEEecccCCcccccccCcc--CcccEEEeecccccc----------
Q 000803 1031 GIHLLEALEDLHIRNCPKLESIP----KGLHKLRSIYIKKCPSLVSLAEKGLP--NTISHVTISYCEKLD---------- 1094 (1277)
Q Consensus 1031 ~~~~l~~L~~L~l~~c~~l~~~p----~~l~~L~~L~l~~c~~l~~l~~~~~~--~~L~~L~l~~~~~l~---------- 1094 (1277)
.+..+.+|+.|.+.-|+ +..++ ..+++|..|.+.+ +.+..++...+. .+++.+.+..|+.+.
T Consensus 135 ~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~ 212 (498)
T KOG4237|consen 135 AFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADD 212 (498)
T ss_pred HhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhhH
Confidence 34566777777776553 33332 2344444444443 223333322221 244444444443211
Q ss_pred --cCcCCCCCCCCcCEEeccCCCCcccccCCCCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCc
Q 000803 1095 --ALPNGMHKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFP 1172 (1277)
Q Consensus 1095 --~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp 1172 (1277)
..|..++.+.......+.+ ..+..+....+.-+++.+--.-...|+.....+...|+.+++|+.|++++| .+..+.
T Consensus 213 ~a~~~ietsgarc~~p~rl~~-~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~ 290 (498)
T KOG4237|consen 213 LAMNPIETSGARCVSPYRLYY-KRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIE 290 (498)
T ss_pred HhhchhhcccceecchHHHHH-HHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhh
Confidence 1111111111111111111 111111111111122222111113444444445556899999999999987 455554
Q ss_pred hhhhhccCCcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCCCCCC--CCccceeeccCChhhHHHhccC
Q 000803 1173 DEEMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGL--PSSLLSLEIKNCPKLRKQCKRD 1250 (1277)
Q Consensus 1173 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~--~~~L~~L~i~~c~~L~~~~~~~ 1250 (1277)
+.+ +.-.+.+++|.+..+ +++.+....|.++..|+.|++++| +|+.+....+ ..+|.+|++-++|- .+.|+-.
T Consensus 291 ~~a--Fe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~Np~-~CnC~l~ 365 (498)
T KOG4237|consen 291 DGA--FEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLSNPF-NCNCRLA 365 (498)
T ss_pred hhh--hcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehccCcc-cCccchH
Confidence 433 345788999999997 789988788999999999999999 7877755444 36899999999984 4568877
Q ss_pred CCCCcc
Q 000803 1251 RGKEWS 1256 (1277)
Q Consensus 1251 ~~~~w~ 1256 (1277)
|-.+|-
T Consensus 366 wl~~Wl 371 (498)
T KOG4237|consen 366 WLGEWL 371 (498)
T ss_pred HHHHHH
Confidence 777775
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=3.5e-09 Score=116.90 Aligned_cols=182 Identities=21% Similarity=0.208 Sum_probs=116.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh--
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-- 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-- 246 (1277)
..++.|+|++|+||||+++.+++..... .+ ..+|+ +....+..++++.++..++..... .+.......+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~---~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE---RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC---Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence 3588999999999999999999864321 11 22343 233456778888888888654332 2223333333322
Q ss_pred ---hcCceEEEEecCcccccHHhHHhhhcccc---cCCCCcEEEEEcccccccccc----------CCCceeecCCCCHH
Q 000803 247 ---VDGKRFLLVLDDVWNEDYSLWVDLKAPFL---AAAPNSKMIITTRNSHVASTM----------GPIDHYNLEHLLDD 310 (1277)
Q Consensus 247 ---l~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~~s~iivTtr~~~v~~~~----------~~~~~~~l~~L~~~ 310 (1277)
..+++.+||+||+|......++.+..... .......|++|.... ....+ .....+.+++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 26788999999999876666666543221 112233455555432 11111 11235789999999
Q ss_pred HHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhh
Q 000803 311 DCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLL 357 (1277)
Q Consensus 311 ~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 357 (1277)
|..+++...+............++..+.|++.++|.|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987764332211223446788899999999999999988766
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=3.5e-08 Score=114.33 Aligned_cols=302 Identities=14% Similarity=0.070 Sum_probs=170.1
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc--CCcceEEEEEeCCCcCHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS--GKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~~f~~~~wv~~s~~~~~~~~ 218 (1277)
+..++||++++++|...+...... .....+.|+|++|+|||++++.++++...... +.--..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 347999999999999998653211 33457899999999999999999975432110 00024578887777777889
Q ss_pred HHHHHHHhc---CCCC-CCCcHHHHHHHHHHhhc--CceEEEEecCccccc---HHhHHhhhccc-ccCC--CCcEEEEE
Q 000803 219 SKALLESIT---SATC-DLKTVDEVQVQLKKAVD--GKRFLLVLDDVWNED---YSLWVDLKAPF-LAAA--PNSKMIIT 286 (1277)
Q Consensus 219 ~~~il~~l~---~~~~-~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~~s~iivT 286 (1277)
+.+++.++. .... ...+.++....+.+.+. +++++||||+++.-. ......+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 12234455555555553 568999999997641 11122222211 1111 23345555
Q ss_pred cccccccccc-----C--CCceeecCCCCHHHHHHHHHHhhcCC-CCCCchhhHHHHHHHHHhhcCCchHH-HHHHHhhh
Q 000803 287 TRNSHVASTM-----G--PIDHYNLEHLLDDDCWSIFKTHAFEG-RDHNALEISESFRKKVVGKCGGLPLA-AKTLGGLL 357 (1277)
Q Consensus 287 tr~~~v~~~~-----~--~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~~~~L 357 (1277)
|........+ . ....+.+++.+.++..+++..++-.. ......+...+...+++....|.|-. +.++-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5444321111 0 12458899999999999998886311 11112223334455577777788844 33332211
Q ss_pred --c---C--C-ChhhHHHHHhhcccCCCCCCChHHHHHHhhhcCChhhhHHHhHhccc--CCCceeChHHHHHHH--HhC
Q 000803 358 --R---T--T-TYDMWDDILDSKIWDLPRQSSILPVLRLSYHHLPSHLKRCFAYCAIF--PKDFEFDEKELVFLW--IAG 425 (1277)
Q Consensus 358 --~---~--~-~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~li~~w--~a~ 425 (1277)
. . . +.+....+.+.. -.....-+...||.+.|..+..++.. .++..+...++...+ +++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 1 444444444321 12334556788999888766655422 133345555555432 122
Q ss_pred CccccCCChhhHHHHHHHHHHHHHhCCCcccc
Q 000803 426 GIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRT 457 (1277)
Q Consensus 426 g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~ 457 (1277)
.+ .. ....+.....++..|...|+|...
T Consensus 323 ~~-~~---~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DI-GV---DPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hc-CC---CCCcHHHHHHHHHHHHhcCCeEEE
Confidence 11 10 011234556778888888888764
No 28
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.02 E-value=1.5e-09 Score=117.43 Aligned_cols=193 Identities=20% Similarity=0.297 Sum_probs=99.1
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHH-
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKAL- 222 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i- 222 (1277)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+..... .+ .++|+...+..... ....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~---~~-~~~y~~~~~~~~~~-~~~~~~ 69 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK---GY-KVVYIDFLEESNES-SLRSFI 69 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT-----EE-CCCHHCCTTBSHHH-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc---CC-cEEEEecccchhhh-HHHHHH
Confidence 789999999999988653 23689999999999999999998854221 11 34444443333221 11111
Q ss_pred ---------HHHhc----CCCC------C----CCcHHHHHHHHHHhhcCceEEEEecCccccc------HHhHHhhhcc
Q 000803 223 ---------LESIT----SATC------D----LKTVDEVQVQLKKAVDGKRFLLVLDDVWNED------YSLWVDLKAP 273 (1277)
Q Consensus 223 ---------l~~l~----~~~~------~----~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~~~~~l~~~ 273 (1277)
...+. .... . ......+.+.+.+ .+++++||+||+.... ......+...
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~ 147 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKK--KGKKVIIVIDEFQYLAIASEEDKDFLKSLRSL 147 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHH--CHCCEEEEEETGGGGGBCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHh--cCCcEEEEEecHHHHhhcccchHHHHHHHHHH
Confidence 11121 1110 0 1112222233322 2345999999996654 1111222222
Q ss_pred ccc--CCCCcEEEEEcccccccc--------ccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhc
Q 000803 274 FLA--AAPNSKMIITTRNSHVAS--------TMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKC 343 (1277)
Q Consensus 274 l~~--~~~~s~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c 343 (1277)
+.. ...+-.+|++.....+.. ..+....+.+++|+.+++++++...+-.. ... +..++..++|+..+
T Consensus 148 ~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~ 224 (234)
T PF01637_consen 148 LDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLT 224 (234)
T ss_dssp HHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHH
T ss_pred HhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHh
Confidence 222 123334444443332221 12333459999999999999998866322 111 22355668999999
Q ss_pred CCchHHHHH
Q 000803 344 GGLPLAAKT 352 (1277)
Q Consensus 344 ~glPLai~~ 352 (1277)
||+|..|..
T Consensus 225 gG~P~~l~~ 233 (234)
T PF01637_consen 225 GGNPRYLQE 233 (234)
T ss_dssp TT-HHHHHH
T ss_pred CCCHHHHhc
Confidence 999998864
No 29
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.00 E-value=2.6e-08 Score=116.50 Aligned_cols=293 Identities=17% Similarity=0.189 Sum_probs=186.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC-cCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD-FDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~ 220 (1277)
...|-|.. +++.|... .+.+++.|..++|.|||||+.+... ... .-..+.|.+..+. -++....+
T Consensus 19 ~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~---~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 19 DNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAA---DGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred ccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcC---cccceeEeecCCccCCHHHHHH
Confidence 34555554 44555443 4579999999999999999999976 222 2246899998764 56778888
Q ss_pred HHHHHhcCCCCCC-------------CcHHHHHHHHHHhhc--CceEEEEecCcccccHHhHHhhhccc-ccCCCCcEEE
Q 000803 221 ALLESITSATCDL-------------KTVDEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPF-LAAAPNSKMI 284 (1277)
Q Consensus 221 ~il~~l~~~~~~~-------------~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l-~~~~~~s~ii 284 (1277)
.++..+....++. .+...+...+..-+. .++..+||||..-........-...| .....+-..|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 8888887433221 223334444444332 46899999998554333333333333 3445688999
Q ss_pred EEcccccc---ccccCCCceeecC----CCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhh
Q 000803 285 ITTRNSHV---ASTMGPIDHYNLE----HLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLL 357 (1277)
Q Consensus 285 vTtr~~~v---~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 357 (1277)
||||...- +...-....++++ .++.+|+.++|..... .+..+...+.+.+...|-+-|+..++=.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-------l~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-------LPLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-------CCCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 99998742 2221112234443 6899999999986652 12234566789999999999999998888
Q ss_pred cCC-ChhhHHHHHhhcccCCCCCCChHH-HHHHhhhcCChhhhHHHhHhcccCCCceeChHHHHHHHHhCCccccCCChh
Q 000803 358 RTT-TYDMWDDILDSKIWDLPRQSSILP-VLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNE 435 (1277)
Q Consensus 358 ~~~-~~~~w~~~l~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 435 (1277)
+.+ +.+.-...+.-. .+.+.+ ...--++.||+++|.-++-+|+++.- . ..|+.. -
T Consensus 238 ~~~~~~~q~~~~LsG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f---~-~eL~~~-------------L 294 (894)
T COG2909 238 RNNTSAEQSLRGLSGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF---N-DELCNA-------------L 294 (894)
T ss_pred cCCCcHHHHhhhccch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh---h-HHHHHH-------------H
Confidence 844 333222222100 011111 23445799999999999999998431 1 222221 1
Q ss_pred hHHHHHHHHHHHHHhCCCcc-ccCCCCCccchhHHHHHHHHHhc
Q 000803 436 QLKDLGSQCFHDLVSRSIFQ-RTGFGSSKFAMHDLVHALAQLVS 478 (1277)
Q Consensus 436 ~~~~~~~~~~~~L~~~~li~-~~~~~~~~~~mhdlv~~~~~~~~ 478 (1277)
+-++.+..++++|.+++++- +-++....|+.|.+..+|.+.--
T Consensus 295 tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~ 338 (894)
T COG2909 295 TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRL 338 (894)
T ss_pred hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhh
Confidence 12345677899999999875 44556678999999999976543
No 30
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.97 E-value=1.1e-08 Score=115.53 Aligned_cols=277 Identities=17% Similarity=0.152 Sum_probs=148.4
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
-..|+|+++.++.+..++....... .....+.|+|++|+||||+|+.+++.... .+ .++... .......+.
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l~~----~~---~~~~~~-~~~~~~~l~ 94 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEMGV----NI---RITSGP-ALEKPGDLA 94 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHhCC----Ce---EEEecc-cccChHHHH
Confidence 3569999999999888775432111 34567889999999999999999885432 11 112211 111112222
Q ss_pred HHHHHhcCCCC-CCCcH----HHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccc
Q 000803 221 ALLESITSATC-DLKTV----DEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVAST 295 (1277)
Q Consensus 221 ~il~~l~~~~~-~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~ 295 (1277)
.++..+..... -.++. ....+.+...+.+.+..+|+|+..+... +...+ .+.+-|..||+...+...
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l---~~~~li~at~~~~~l~~~ 166 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDL---PPFTLIGATTRAGLLTSP 166 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecC---CCceEEeecCCcccCCHH
Confidence 33333221110 00000 1122333444444555555555432210 00011 124556667775544332
Q ss_pred cC--CCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCCChhhHHHHHhhcc
Q 000803 296 MG--PIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDMWDDILDSKI 373 (1277)
Q Consensus 296 ~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~~~ 373 (1277)
+. ....+.+++++.++..+++.+.+.... ....++.+..|++.|+|.|-.+..+...+ ..|.......
T Consensus 167 L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~~~- 236 (328)
T PRK00080 167 LRDRFGIVQRLEFYTVEELEKIVKRSARILG----VEIDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKGDG- 236 (328)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcCCC-
Confidence 21 124589999999999999998875322 12335677899999999996555444322 1222111100
Q ss_pred cCCCC--CCChHHHHHHhhhcCChhhhHHHh-HhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHHHHH-HHH
Q 000803 374 WDLPR--QSSILPVLRLSYHHLPSHLKRCFA-YCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFH-DLV 449 (1277)
Q Consensus 374 ~~~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 449 (1277)
.... -......+...|..|++..+..+. ....|+.+ .+..+.+.... .. .. +.++..++ .|+
T Consensus 237 -~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~--~~----~~~~~~~e~~Li 302 (328)
T PRK00080 237 -VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE--ER----DTIEDVYEPYLI 302 (328)
T ss_pred -CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC--Cc----chHHHHhhHHHH
Confidence 0000 012234456667888888888775 67777765 45555443322 11 11 23343455 899
Q ss_pred hCCCccccC
Q 000803 450 SRSIFQRTG 458 (1277)
Q Consensus 450 ~~~li~~~~ 458 (1277)
+.+|++...
T Consensus 303 ~~~li~~~~ 311 (328)
T PRK00080 303 QQGFIQRTP 311 (328)
T ss_pred HcCCcccCC
Confidence 999997654
No 31
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.94 E-value=3e-08 Score=111.51 Aligned_cols=275 Identities=17% Similarity=0.098 Sum_probs=148.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..|||+++.++++..++....... .....+.++|++|+|||+||+.+++.... .+ ..+..+...... .+..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~~~----~~---~~~~~~~~~~~~-~l~~ 74 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEMGV----NL---KITSGPALEKPG-DLAA 74 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHhCC----CE---EEeccchhcCch-hHHH
Confidence 368999999999988886432211 33456889999999999999999885422 12 112211111111 1222
Q ss_pred HHHHhcCCCC------CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccc
Q 000803 222 LLESITSATC------DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVAST 295 (1277)
Q Consensus 222 il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~ 295 (1277)
.+..+..... +.. .....+.+...+.+.+..+|+|+..... .| ..++ .+.+-|.+||+...+...
T Consensus 75 ~l~~~~~~~vl~iDEi~~l-~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~ 145 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRL-SPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSP 145 (305)
T ss_pred HHHhcccCCEEEEehHhhh-CHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHH
Confidence 2223221110 000 1122344555555566666666654321 11 1111 225566677776544432
Q ss_pred c--CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCCChhhHHHHHhhcc
Q 000803 296 M--GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDMWDDILDSKI 373 (1277)
Q Consensus 296 ~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~~~ 373 (1277)
+ .....+.+++++.++..+++.+.+..... ...++....|++.|+|.|-.+..++..+ |........
T Consensus 146 l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~----~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~ 214 (305)
T TIGR00635 146 LRDRFGIILRLEFYTVEELAEIVSRSAGLLNV----EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQ 214 (305)
T ss_pred HHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCC
Confidence 1 11245789999999999999988753211 2234566789999999997665444422 111100000
Q ss_pred cCCCC--CCChHHHHHHhhhcCChhhhHHHh-HhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHHHHH-HHH
Q 000803 374 WDLPR--QSSILPVLRLSYHHLPSHLKRCFA-YCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFH-DLV 449 (1277)
Q Consensus 374 ~~~~~--~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~ 449 (1277)
..... -......+...|..++++.+..+. .++.++.+ .+..+.+.... .. ....++..++ .|+
T Consensus 215 ~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~------~~~~~~~~~e~~Li 281 (305)
T TIGR00635 215 KIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE------DADTIEDVYEPYLL 281 (305)
T ss_pred CCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC------CcchHHHhhhHHHH
Confidence 00000 011222245668888888877666 55667544 34443333221 11 1134556677 699
Q ss_pred hCCCccccC
Q 000803 450 SRSIFQRTG 458 (1277)
Q Consensus 450 ~~~li~~~~ 458 (1277)
+.+|++..+
T Consensus 282 ~~~li~~~~ 290 (305)
T TIGR00635 282 QIGFLQRTP 290 (305)
T ss_pred HcCCcccCC
Confidence 999997654
No 32
>PF05729 NACHT: NACHT domain
Probab=98.90 E-value=6.9e-09 Score=105.34 Aligned_cols=146 Identities=25% Similarity=0.340 Sum_probs=90.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCC--cceEEEEEeCCCcCHH---HHHHHHHHHhcCCCCCCCcHHHHHHHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGK--FDVKAWVCVSDDFDVL---SISKALLESITSATCDLKTVDEVQVQLK 244 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~--f~~~~wv~~s~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~l~ 244 (1277)
|++.|+|.+|+||||+++.++.+........ +...+|+...+..... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH-
Confidence 5799999999999999999988655443111 4566777766544322 23333333332211 1111111111
Q ss_pred HhhcCceEEEEecCcccccHH-------hHHhhhcccccC--CCCcEEEEEcccccc---ccccCCCceeecCCCCHHHH
Q 000803 245 KAVDGKRFLLVLDDVWNEDYS-------LWVDLKAPFLAA--APNSKMIITTRNSHV---ASTMGPIDHYNLEHLLDDDC 312 (1277)
Q Consensus 245 ~~l~~kr~LlVlDdv~~~~~~-------~~~~l~~~l~~~--~~~s~iivTtr~~~v---~~~~~~~~~~~l~~L~~~~~ 312 (1277)
.-+.++++||+|++++.... .+..+...+... .++.+++||+|.... .........+.+.+|++++.
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~ 155 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDI 155 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHH
Confidence 12578999999999664321 133333333333 568999999998765 33334446799999999999
Q ss_pred HHHHHHhh
Q 000803 313 WSIFKTHA 320 (1277)
Q Consensus 313 ~~Lf~~~~ 320 (1277)
.+++.+..
T Consensus 156 ~~~~~~~f 163 (166)
T PF05729_consen 156 KQYLRKYF 163 (166)
T ss_pred HHHHHHHh
Confidence 99987653
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.79 E-value=5.8e-07 Score=106.09 Aligned_cols=251 Identities=12% Similarity=0.042 Sum_probs=142.4
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-cCCc--ceEEEEEeCCCcCHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-SGKF--DVKAWVCVSDDFDVLS 217 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~~f--~~~~wv~~s~~~~~~~ 217 (1277)
+..+.||++|+++|...|...-... +...++.|+|++|.|||+.++.|.+....+. .... -.+++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 3578899999999999886543211 2336788999999999999999987543211 0011 1357788777677888
Q ss_pred HHHHHHHHhcCCCCC-CCcHHHHHHHHHHhh-c--CceEEEEecCcccccHHhHHhhhcccc-cCCCCcEEEE--Ecccc
Q 000803 218 ISKALLESITSATCD-LKTVDEVQVQLKKAV-D--GKRFLLVLDDVWNEDYSLWVDLKAPFL-AAAPNSKMII--TTRNS 290 (1277)
Q Consensus 218 ~~~~il~~l~~~~~~-~~~~~~~~~~l~~~l-~--~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~iiv--Ttr~~ 290 (1277)
++..|.+++...... .....+..+.+...+ . +...+||||+|+.-....-+.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 889999888544322 222333444444443 2 224589999996432111111211111 1224556554 33322
Q ss_pred --------ccccccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCC--
Q 000803 291 --------HVASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT-- 360 (1277)
Q Consensus 291 --------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-- 360 (1277)
.+...++. ..+...|++.++-.+++..++-.....-.+..++-+|+.++...|-.=.||.++-.....+
T Consensus 913 DLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 22222222 3467799999999999999885432222334455556655555566667777665444321
Q ss_pred ---ChhhHHHHHhhcccCCCCCCChHHHHHHhhhcCChhhhHHHh
Q 000803 361 ---TYDMWDDILDSKIWDLPRQSSILPVLRLSYHHLPSHLKRCFA 402 (1277)
Q Consensus 361 ---~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~ 402 (1277)
..+.-..+.+.. -...+.-....||.+.|-.+.
T Consensus 992 skVT~eHVrkAleei---------E~srI~e~IktLPlHqKLVLl 1027 (1164)
T PTZ00112 992 QKIVPRDITEATNQL---------FDSPLTNAINYLPWPFKMFLT 1027 (1164)
T ss_pred CccCHHHHHHHHHHH---------HhhhHHHHHHcCCHHHHHHHH
Confidence 223333332211 011233344678888766554
No 34
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.70 E-value=4.5e-08 Score=108.19 Aligned_cols=70 Identities=31% Similarity=0.623 Sum_probs=46.2
Q ss_pred ccccCceeeecCCCccccccccccccEEEecccCCcccccccCccCcccEEEeecccccccCcCCCCCCCCcCEEecc
Q 000803 1035 LEALEDLHIRNCPKLESIPKGLHKLRSIYIKKCPSLVSLAEKGLPNTISHVTISYCEKLDALPNGMHKLQSLQYLKIK 1112 (1277)
Q Consensus 1035 l~~L~~L~l~~c~~l~~~p~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~l~~lp~~l~~l~~L~~L~l~ 1112 (1277)
+.+++.|++++| .+..+|.-..+|++|.+++|.+++.+|. .+|.+|+.|++++|..+..+|. +|+.|+++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~sLP~------sLe~L~L~ 120 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEISGLPE------SVRSLEIK 120 (426)
T ss_pred hcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccccccc------ccceEEeC
Confidence 466788888888 6777774334577777777777766663 3456777777777766666653 35555554
No 35
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.69 E-value=4.8e-07 Score=113.36 Aligned_cols=311 Identities=16% Similarity=0.184 Sum_probs=176.7
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc---CHHHHHH
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF---DVLSISK 220 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~---~~~~~~~ 220 (1277)
++||+.+++.+...+..... +...++.+.|..|||||+++++|.....-+ .+.|-...+-....+. ...+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i~~~-~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPITQQ-RGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHHhcc-ceeeeHhhcccccCCCchHHHHHHHH
Confidence 78999999999998876543 556799999999999999999998643222 1122111111111221 1223344
Q ss_pred HHHHHh-------------------cCCCCC----------------------CCcHH-----HHHHHHHHhh-cCceEE
Q 000803 221 ALLESI-------------------TSATCD----------------------LKTVD-----EVQVQLKKAV-DGKRFL 253 (1277)
Q Consensus 221 ~il~~l-------------------~~~~~~----------------------~~~~~-----~~~~~l~~~l-~~kr~L 253 (1277)
++..++ +..... ..... ..+..+..+. +.++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 444433 111000 00000 1122233333 456999
Q ss_pred EEecCcccccHHhHHhhhcccccCC----CCcEEE--EEcccc--ccccccCCCceeecCCCCHHHHHHHHHHhhcCCCC
Q 000803 254 LVLDDVWNEDYSLWVDLKAPFLAAA----PNSKMI--ITTRNS--HVASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGRD 325 (1277)
Q Consensus 254 lVlDdv~~~~~~~~~~l~~~l~~~~----~~s~ii--vTtr~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 325 (1277)
+|+||+.+.+....+-+........ .-..|. .|.+.. .+-........+.+.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 9999997766544433322221111 011222 222222 1222223346799999999999999887764321
Q ss_pred CCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCC-------ChhhHHHHHhhcccCCCCCCChHHHHHHhhhcCChhhh
Q 000803 326 HNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT-------TYDMWDDILDSKIWDLPRQSSILPVLRLSYHHLPSHLK 398 (1277)
Q Consensus 326 ~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-------~~~~w~~~l~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 398 (1277)
....+....|+++..|+|+.+.-+-..+... +...|..-..+ ....+..+.+...+..-.+.||...|
T Consensus 237 ----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 237 ----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred ----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 2335667889999999999999888888764 23334332211 11111123355678899999999999
Q ss_pred HHHhHhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHHHHHHHHhCCCcccc-----CCCCCc--c-chhHHH
Q 000803 399 RCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRT-----GFGSSK--F-AMHDLV 470 (1277)
Q Consensus 399 ~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~-----~~~~~~--~-~mhdlv 470 (1277)
+.+...||+-. .|+...|...|-. .....+....+.|....++-.. ...... | ..||.+
T Consensus 312 ~Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 99999999954 4555555554411 2334555556666554444321 111111 2 468888
Q ss_pred HHHHHHh
Q 000803 471 HALAQLV 477 (1277)
Q Consensus 471 ~~~~~~~ 477 (1277)
++.|-..
T Consensus 379 qqaaY~~ 385 (849)
T COG3899 379 QQAAYNL 385 (849)
T ss_pred HHHHhcc
Confidence 8876443
No 36
>PRK06893 DNA replication initiation factor; Validated
Probab=98.58 E-value=6.2e-07 Score=95.07 Aligned_cols=152 Identities=16% Similarity=0.188 Sum_probs=93.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+.+.|+|++|+|||+||+.+++....+ ...+.|+++.... ... . .+.+.++
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~----~~~~~y~~~~~~~---~~~-----------------~----~~~~~~~- 90 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN----QRTAIYIPLSKSQ---YFS-----------------P----AVLENLE- 90 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc----CCCeEEeeHHHhh---hhh-----------------H----HHHhhcc-
Confidence 578999999999999999999864222 2245666653210 000 0 1111121
Q ss_pred ceEEEEecCccccc-HHhHHh-hhcccccC-CCCcEEEEEccc----------cccccccCCCceeecCCCCHHHHHHHH
Q 000803 250 KRFLLVLDDVWNED-YSLWVD-LKAPFLAA-APNSKMIITTRN----------SHVASTMGPIDHYNLEHLLDDDCWSIF 316 (1277)
Q Consensus 250 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~~s~iivTtr~----------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 316 (1277)
+.-+||+||+|... ...|.. +...+... ..|..+||+|.+ +++++.+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 234553 22223222 235566554443 245555555567899999999999999
Q ss_pred HHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 317 KTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
.+.++... ....+++.+-|++.+.|..-++..+-
T Consensus 171 ~~~a~~~~----l~l~~~v~~~L~~~~~~d~r~l~~~l 204 (229)
T PRK06893 171 QRNAYQRG----IELSDEVANFLLKRLDRDMHTLFDAL 204 (229)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 99886432 22335677789999988776655443
No 37
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.56 E-value=7.8e-09 Score=117.91 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=38.9
Q ss_pred CCCeeeEEecCCCCCC-----CCCcCCCCCCccceeeccCCcccc-------ccccccccccCcEEEecCCcCccccchh
Q 000803 551 KFKKLRLLSLQGYYIG-----ELPIPFEDLRLLRYLNLADTDIRS-------LPESSCSLLNLEILILRNCSSLIKLPSK 618 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~-----~lp~~~~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 618 (1277)
.+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+..+.+|+.|++++|......+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 3344555555555541 233334444455555555544331 2233444555555555554333233333
Q ss_pred hccccC---cCeeeecCcc
Q 000803 619 IRRLIN---LCHLDIRGAI 634 (1277)
Q Consensus 619 i~~L~~---L~~L~l~~~~ 634 (1277)
+..+.+ |++|++++|.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 101 LESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHhccCcccEEEeeCCc
Confidence 433333 5555555554
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=2.9e-08 Score=98.03 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=44.1
Q ss_pred CCCeeeEEecCCCCCCCCCcCCC-CCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhh-ccccCcCee
Q 000803 551 KFKKLRLLSLQGYYIGELPIPFE-DLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKI-RRLINLCHL 628 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L 628 (1277)
+...+|.|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.++ .+..|.+|++|++++ +.++.+++.+ ..+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCEE
Confidence 3446788888888887773 455 5788888888888888885 577888888888888 4777776655 468888888
Q ss_pred eecCccccccCCC--CCCCCCCCcccCceeeCCCCCC---CCChhccccccccC
Q 000803 629 DIRGAILLKEMPF--GMKELKNLQTLSNFVVGKGGET---ASGLEDLKILKFLS 677 (1277)
Q Consensus 629 ~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~~~---~~~~~~L~~L~~L~ 677 (1277)
++++|. +..+.. .+..+++|+.|++.+|...... ...+..+++|+.|.
T Consensus 94 ~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 888886 554432 2566777777777777654321 11345566666665
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.47 E-value=4.5e-08 Score=111.60 Aligned_cols=113 Identities=24% Similarity=0.164 Sum_probs=73.7
Q ss_pred hhhhcCCCCeeeEEecCCCCCCC-------CCcCCCCCCccceeeccCCccc-ccccccccccc---CcEEEecCCcCcc
Q 000803 545 LYDLLPKFKKLRLLSLQGYYIGE-------LPIPFEDLRLLRYLNLADTDIR-SLPESSCSLLN---LEILILRNCSSLI 613 (1277)
Q Consensus 545 ~~~~~~~l~~Lr~L~L~~~~i~~-------lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~L~~~~~l~ 613 (1277)
+...+...+.|+.|+++++.+.. ++..+..+.+|++|++++|.+. ..+..+..+.+ |++|++++|. +.
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~ 121 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LG 121 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cc
Confidence 34445666778888888877653 2345667788888888888776 44555555555 8888888864 33
Q ss_pred -----ccchhhccc-cCcCeeeecCccccc-----cCCCCCCCCCCCcccCceeeCC
Q 000803 614 -----KLPSKIRRL-INLCHLDIRGAILLK-----EMPFGMKELKNLQTLSNFVVGK 659 (1277)
Q Consensus 614 -----~lp~~i~~L-~~L~~L~l~~~~~l~-----~~p~~i~~L~~L~~L~~~~~~~ 659 (1277)
.++..+..+ ++|+.|++++|. +. .++..+..+++|++|++..+..
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~l 177 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNGI 177 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCCC
Confidence 233445666 788888888886 33 2333455566777776665543
No 40
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.46 E-value=1.4e-07 Score=110.70 Aligned_cols=107 Identities=30% Similarity=0.381 Sum_probs=94.6
Q ss_pred CCCCeeeEEecCCCCCCCCCcCCCCCC-ccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 550 PKFKKLRLLSLQGYYIGELPIPFEDLR-LLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 550 ~~l~~Lr~L~L~~~~i~~lp~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
..+..+..|++.++.+.++|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+++|+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~L 191 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNNL 191 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhhe
Confidence 344789999999999999998888885 999999999999999989999999999999994 889999888899999999
Q ss_pred eecCccccccCCCCCCCCCCCcccCceeeC
Q 000803 629 DIRGAILLKEMPFGMKELKNLQTLSNFVVG 658 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~ 658 (1277)
++++|. +..+|..++.+..|++|.+..+.
T Consensus 192 ~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 192 DLSGNK-ISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred eccCCc-cccCchhhhhhhhhhhhhhcCCc
Confidence 999998 88899877777889998877774
No 41
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.45 E-value=6.6e-07 Score=86.37 Aligned_cols=119 Identities=21% Similarity=0.238 Sum_probs=82.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc-cCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVED-SGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
-+++.|+|.+|+|||++++++.++..... ...-..++|+.+....+...+.+.++.+++.......+.+++.+.+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 46899999999999999999988543210 00024567999988889999999999999977666566777777777777
Q ss_pred cCc-eEEEEecCcccc-cHHhHHhhhcccccCCCCcEEEEEccc
Q 000803 248 DGK-RFLLVLDDVWNE-DYSLWVDLKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 248 ~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtr~ 289 (1277)
... ..+||+|+++.- ....++.+.... + ..+.+||++.+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~-~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLL-N-ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHT-C-SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHH-h-CCCCeEEEEECh
Confidence 654 459999999765 444445553322 2 567777777665
No 42
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.45 E-value=2.4e-06 Score=99.54 Aligned_cols=176 Identities=19% Similarity=0.228 Sum_probs=102.4
Q ss_pred ccccchhhHHH---HHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 143 VVFGREEDKTK---ILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 143 ~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.+||++..+.. +.+++.. .....+.++|++|+||||+|+.+++.... .| +.++.......-.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~~~----~~-----~~l~a~~~~~~~i 77 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGATDA----PF-----EALSAVTSGVKDL 77 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHhCC----CE-----EEEecccccHHHH
Confidence 57788776544 6666543 23456788999999999999999874321 22 2222211111111
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEE--Eccccc--cc-
Q 000803 220 KALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMII--TTRNSH--VA- 293 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--Ttr~~~--v~- 293 (1277)
+++++ ..+.. ..+++.+|++|+++.......+.+...+. .|..++| ||.+.. +.
T Consensus 78 r~ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 78 REVIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHHHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 12221 11111 24578899999998766555555554443 2444444 344322 11
Q ss_pred cccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 294 STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 294 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
........+.+.+++.++.+.++.+.+....... ....++..+.|++.|+|.+..+.-+.
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 1112235789999999999999987653211100 12335667789999999987664443
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.44 E-value=5.6e-09 Score=111.32 Aligned_cols=162 Identities=13% Similarity=0.106 Sum_probs=83.2
Q ss_pred ccEEEecccCCccccccc---CccCcccEEEeecccccccCc--CCCCCCCCcCEEeccCCCCcccccCCCC---CCCCc
Q 000803 1059 LRSIYIKKCPSLVSLAEK---GLPNTISHVTISYCEKLDALP--NGMHKLQSLQYLKIKECPSILSFSEEGF---PTNLK 1130 (1277)
Q Consensus 1059 L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~ 1130 (1277)
+.++++..|..+++.... .....||.|+.++|..++..+ .-..++++|+.|.++.|..++......+ .+.|+
T Consensus 270 i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le 349 (483)
T KOG4341|consen 270 ILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLE 349 (483)
T ss_pred hhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhh
Confidence 444455566555554421 223456777777766654332 1124567777777777766544322222 23455
Q ss_pred eEEEccccCccchhhh-hhhcccccCCcccccccccCCCccCchh--hhhccCCcccceeeecccccccccCccCCCCCC
Q 000803 1131 LIRIGGGVDAKMYKAV-IQWGLHRLTSLIGLSIEECHDAESFPDE--EMRMMLPASLTFLILRRLSKLKYLSSMGFQSLT 1207 (1277)
Q Consensus 1131 ~L~l~~~~~~~~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~lp~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~ 1207 (1277)
.|++ ..|..+... ....-.+++.|+.|.+++|..+.+--.- .........|..+.+.+||.+..-..+.+..++
T Consensus 350 ~l~~---e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~ 426 (483)
T KOG4341|consen 350 RLDL---EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICR 426 (483)
T ss_pred hhcc---cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCc
Confidence 5555 344444432 2222346777788888777655432000 000123445666666666665544434455566
Q ss_pred CCCceeccCCCCCCCC
Q 000803 1208 SLEHLLIEDCPNLTSF 1223 (1277)
Q Consensus 1208 ~L~~L~l~~c~~l~~l 1223 (1277)
+|+.+++++|..++.-
T Consensus 427 ~Leri~l~~~q~vtk~ 442 (483)
T KOG4341|consen 427 NLERIELIDCQDVTKE 442 (483)
T ss_pred ccceeeeechhhhhhh
Confidence 6666666666555443
No 44
>PTZ00202 tuzin; Provisional
Probab=98.42 E-value=4e-06 Score=91.87 Aligned_cols=170 Identities=12% Similarity=0.190 Sum_probs=102.8
Q ss_pred CCCCCCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 135 SSSVPTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 135 ~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
...+++.+.|+||+.+..++...|...+. ...+++.|+|++|+|||||++.+.... ++ ...+++. . +
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l------~~-~qL~vNp-r--g 321 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE------GM-PAVFVDV-R--G 321 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC------Cc-eEEEECC-C--C
Confidence 34456678999999999999998865332 234699999999999999999998632 21 1233332 2 6
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh-----c-CceEEEEecCcccccH-HhHHhhhcccccCCCCcEEEEEc
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAV-----D-GKRFLLVLDDVWNEDY-SLWVDLKAPFLAAAPNSKMIITT 287 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~-~kr~LlVlDdv~~~~~-~~~~~l~~~l~~~~~~s~iivTt 287 (1277)
..++++.++.+++.+.. ....++.+.|++.+ . +++.+||+-==.-.+. -.+.+.. .+...-.-|.|++--
T Consensus 322 ~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~ev 398 (550)
T PTZ00202 322 TEDTLRSVVKALGVPNV--EACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEV 398 (550)
T ss_pred HHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeee
Confidence 79999999999996332 22233434443332 2 6666666532211110 1122211 233334567777654
Q ss_pred ccccccccc---CCCceeecCCCCHHHHHHHHHHhh
Q 000803 288 RNSHVASTM---GPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 288 r~~~v~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
-.+.+.... .....|.+..++.++|.++.....
T Consensus 399 pleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 399 PLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 433222111 122458899999999988766543
No 45
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=3.7e-06 Score=90.51 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=102.7
Q ss_pred CCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 139 PTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 139 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..+.+++|....+.++++ . +.+.-...||++|+||||||+.+...... .| ..++-..+-.+-
T Consensus 27 vGQ~HLlg~~~~lrr~v~---~------~~l~SmIl~GPPG~GKTTlA~liA~~~~~----~f-----~~~sAv~~gvkd 88 (436)
T COG2256 27 VGQEHLLGEGKPLRRAVE---A------GHLHSMILWGPPGTGKTTLARLIAGTTNA----AF-----EALSAVTSGVKD 88 (436)
T ss_pred cChHhhhCCCchHHHHHh---c------CCCceeEEECCCCCCHHHHHHHHHHhhCC----ce-----EEeccccccHHH
Confidence 344566666665555543 2 45667789999999999999999873221 33 233333222222
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEE--Eccccccc---
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMII--TTRNSHVA--- 293 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--Ttr~~~v~--- 293 (1277)
++++++.. -+....++|.+|++|.|..-+..+.+.++ +....|.-|+| ||-++.-.
T Consensus 89 lr~i~e~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 89 LREIIEEA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNP 149 (436)
T ss_pred HHHHHHHH----------------HHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecH
Confidence 22222221 12233489999999999776554444333 33445776666 55555321
Q ss_pred cccCCCceeecCCCCHHHHHHHHHHhhcCCCCC---CchhhHHHHHHHHHhhcCCchHH
Q 000803 294 STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDH---NALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 294 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
.......++.+++|+.++-.+++.+.+-..... ......++..+-+++.++|---+
T Consensus 150 ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 150 ALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred HHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 112334689999999999999998844221111 11112345667788899887544
No 46
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.38 E-value=3.5e-08 Score=109.24 Aligned_cols=103 Identities=26% Similarity=0.260 Sum_probs=60.2
Q ss_pred eEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecCccc
Q 000803 556 RLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAIL 635 (1277)
Q Consensus 556 r~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 635 (1277)
...||+.|.+..+|..++.+..|..|.|.+|.+..+|..+++|..|.+|||+. +.+..+|..++.|+ |+.|-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lp-Lkvli~sNNk- 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDLP-LKVLIVSNNK- 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcCc-ceeEEEecCc-
Confidence 34556666666666666666666666666666666666666666666666665 35556666555544 5555555554
Q ss_pred cccCCCCCCCCCCCcccCceeeCCCC
Q 000803 636 LKEMPFGMKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 636 l~~~p~~i~~L~~L~~L~~~~~~~~~ 661 (1277)
++.+|.+|+.+..|..|+.+.|.+.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~s 180 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQS 180 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhh
Confidence 55666666655555555555554443
No 47
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=9e-06 Score=91.17 Aligned_cols=180 Identities=16% Similarity=0.215 Sum_probs=115.5
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEe-CCCcCHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCV-SDDFDVLSIS 219 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~-s~~~~~~~~~ 219 (1277)
.++|-+..++.+.+++... .-.....++|+.|+||||+|+.+++..-.. ...|+|...|... +....+.+ .
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 5789888888898888553 234577899999999999999988743111 1236676666542 22222222 2
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccc-cc-cC
Q 000803 220 KALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVA-ST-MG 297 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~-~~-~~ 297 (1277)
+++.+.+... -..+++=++|+|+++..+...|+.+...+.....++.+|++|.+.+.. .. ..
T Consensus 79 r~~~~~~~~~----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 79 RNIIEEVNKK----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHHhcC----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 2222222111 123456677788887777778999998888777788988888655322 11 12
Q ss_pred CCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 298 PIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 298 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
....+.+.++++++....+..... . ...+.++.++..++|.|..+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~~-~-------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKYN-D-------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHhc-C-------CCHHHHHHHHHHcCCCHHHHHH
Confidence 235789999999999887765431 1 1123466789999998876543
No 48
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.37 E-value=3.3e-07 Score=90.61 Aligned_cols=106 Identities=27% Similarity=0.315 Sum_probs=56.5
Q ss_pred CCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccc-cccccCcEEEecCCcCccccch--hhccccCcCe
Q 000803 551 KFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESS-CSLLNLEILILRNCSSLIKLPS--KIRRLINLCH 627 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~ 627 (1277)
.+.+|++|+|++|.|+.++ .+..+.+|++|++++|.|+.+++.+ ..+++|+.|++++| .+..+-. .+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcce
Confidence 5678999999999999985 6888999999999999999997666 46999999999985 6665533 4678999999
Q ss_pred eeecCccccccCCCC----CCCCCCCcccCceeeCC
Q 000803 628 LDIRGAILLKEMPFG----MKELKNLQTLSNFVVGK 659 (1277)
Q Consensus 628 L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~ 659 (1277)
|++.+|. +...+.. +..+++|+.|+...+..
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 9999998 5555532 67899999999776653
No 49
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.35 E-value=8.5e-06 Score=82.03 Aligned_cols=180 Identities=20% Similarity=0.226 Sum_probs=93.4
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..|||.+.-++.+.-.+..... .++.+.-+-.||++|+||||||.-+++.... .|. +++.. ...
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~----~~~---~~sg~-~i~------- 87 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANELGV----NFK---ITSGP-AIE------- 87 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHCT------EE---EEECC-C---------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhccCC----CeE---eccch-hhh-------
Confidence 4699999888776544432211 1145678899999999999999999985432 331 22221 110
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccc--------cCC-----------CCcE
Q 000803 222 LLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFL--------AAA-----------PNSK 282 (1277)
Q Consensus 222 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~--------~~~-----------~~s~ 282 (1277)
...++...+.+ + +++-+|++|.+..-+...-+.+....- ..+ +-+-
T Consensus 88 -------------k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTl 152 (233)
T PF05496_consen 88 -------------KAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTL 152 (233)
T ss_dssp -------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EE
T ss_pred -------------hHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceE
Confidence 01112222221 1 234567778886644433333222211 111 1234
Q ss_pred EEEEccccccccccCCC-c-eeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhh
Q 000803 283 MIITTRNSHVASTMGPI-D-HYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGL 356 (1277)
Q Consensus 283 iivTtr~~~v~~~~~~~-~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 356 (1277)
|=.|||...+...+..- . ..+++..+.+|-.++..+.+..- ..+..++.+.+|++.+.|-|--+.-+-..
T Consensus 153 igATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l----~i~i~~~~~~~Ia~rsrGtPRiAnrll~r 224 (233)
T PF05496_consen 153 IGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL----NIEIDEDAAEEIARRSRGTPRIANRLLRR 224 (233)
T ss_dssp EEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT----T-EE-HHHHHHHHHCTTTSHHHHHHHHHH
T ss_pred eeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh----CCCcCHHHHHHHHHhcCCChHHHHHHHHH
Confidence 55688876655444322 2 34799999999999988766321 12445678899999999999755544333
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.35 E-value=8.1e-07 Score=98.44 Aligned_cols=67 Identities=27% Similarity=0.608 Sum_probs=36.5
Q ss_pred ccceeccCCCCCccccCcCccccccCceeeecCCCccccccccc-cccEEEecccCCcccccccCccCcccEEEeec
Q 000803 1014 LESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKGLH-KLRSIYIKKCPSLVSLAEKGLPNTISHVTISY 1089 (1277)
Q Consensus 1014 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~p~~l~-~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~ 1089 (1277)
++.|++++| .++.+|. .+++|+.|++++|..+..+|..++ +|+.|.+++|..+..+ |.+|+.|++++
T Consensus 54 l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sL-----P~sLe~L~L~~ 121 (426)
T PRK15386 54 SGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGL-----PESVRSLEIKG 121 (426)
T ss_pred CCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccc-----ccccceEEeCC
Confidence 445555555 4555552 344566666666666655554433 4666666666555433 34566666553
No 51
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.34 E-value=5.6e-05 Score=91.82 Aligned_cols=204 Identities=19% Similarity=0.168 Sum_probs=119.9
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCc-ceEEEEEeCCC---cCHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKF-DVKAWVCVSDD---FDVLSI 218 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f-~~~~wv~~s~~---~~~~~~ 218 (1277)
.++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.........| ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 588999999988877643 22356999999999999999999875433221111 12234444321 122222
Q ss_pred HHH---------------HHHHhcCCCC----------------CCC-cHHHHHHHHHHhhcCceEEEEecCcccccHHh
Q 000803 219 SKA---------------LLESITSATC----------------DLK-TVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSL 266 (1277)
Q Consensus 219 ~~~---------------il~~l~~~~~----------------~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~ 266 (1277)
... .+...+.... +.. -....+..+.+.++++++.++-|+.|..+...
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~ 308 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNV 308 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCccc
Confidence 111 1111111000 001 12345778888899999999988888776667
Q ss_pred HHhhhcccccCCCCcEEEE--Ecccccc-cccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhh
Q 000803 267 WVDLKAPFLAAAPNSKMII--TTRNSHV-ASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGK 342 (1277)
Q Consensus 267 ~~~l~~~l~~~~~~s~iiv--Ttr~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 342 (1277)
|+.+...+....+...|++ ||++... ...+ .....+.+.+++.+|.++++.+.+-... ....+++.+.|++.
T Consensus 309 ~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~----v~ls~eal~~L~~y 384 (615)
T TIGR02903 309 PKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN----VHLAAGVEELIARY 384 (615)
T ss_pred chhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHC
Confidence 8887766665555555555 5665432 1111 1224578899999999999998763211 11224455566666
Q ss_pred cCCchHHHHHHHhh
Q 000803 343 CGGLPLAAKTLGGL 356 (1277)
Q Consensus 343 c~glPLai~~~~~~ 356 (1277)
++.-+-|+..++..
T Consensus 385 s~~gRraln~L~~~ 398 (615)
T TIGR02903 385 TIEGRKAVNILADV 398 (615)
T ss_pred CCcHHHHHHHHHHH
Confidence 65556666655443
No 52
>PF13173 AAA_14: AAA domain
Probab=98.34 E-value=1.1e-06 Score=83.85 Aligned_cols=119 Identities=21% Similarity=0.262 Sum_probs=79.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ..+.+.+....
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-----~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-----PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKP 60 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-----ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhcc
Confidence 6899999999999999999987543 12346777665542211000 00 22233333444
Q ss_pred ceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccc------cCCCceeecCCCCHHHH
Q 000803 250 KRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVAST------MGPIDHYNLEHLLDDDC 312 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~------~~~~~~~~l~~L~~~~~ 312 (1277)
++.+|+||++... ..|......+.+..++.+|++|+........ .+....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7889999999765 6788887777776677899999987644421 13334689999998774
No 53
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.34 E-value=1.6e-06 Score=94.13 Aligned_cols=290 Identities=20% Similarity=0.227 Sum_probs=181.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcce-EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDV-KAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..+.+.++|.|||||||++-++.. .+ . .|.. +.++....--+...+.-.+...++....+. +.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~--~--~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AA--S--EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hh--h--hcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHH
Confidence 357899999999999999999876 22 2 4544 445554444455555555555566544332 2233345556
Q ss_pred hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccccccccCCCceeecCCCCHH-HHHHHHHHhhcCCCC
Q 000803 247 VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVASTMGPIDHYNLEHLLDD-DCWSIFKTHAFEGRD 325 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~~~~~ 325 (1277)
..++|.++|+||-..- ...-..+...+..+...-.|+.|+|..... .....+.+.+|+.. ++.++|...+.....
T Consensus 85 ~~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 85 IGDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred HhhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhcc
Confidence 6789999999997321 122233444455556677889999985433 23355777777766 688898776632211
Q ss_pred C-CchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCCChhhHHHHHhhcccCCC--------CCCChHHHHHHhhhcCChh
Q 000803 326 H-NALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDMWDDILDSKIWDLP--------RQSSILPVLRLSYHHLPSH 396 (1277)
Q Consensus 326 ~-~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~~~~~w~~~l~~~~~~~~--------~~~~i~~~l~~sy~~L~~~ 396 (1277)
. .-.........+|.++.+|.|++|...++..++-...+-...++.....+. .+......+.+||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1 011222456678999999999999999999988755554444433211111 1356678899999999999
Q ss_pred hhHHHhHhcccCCCceeChHHHHHHHHhCCccccCCChhhHHHHHHHHHHHHHhCCCccccC-CCCCccchhHHHHHHHH
Q 000803 397 LKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQLKDLGSQCFHDLVSRSIFQRTG-FGSSKFAMHDLVHALAQ 475 (1277)
Q Consensus 397 ~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~~~li~~~~-~~~~~~~mhdlv~~~~~ 475 (1277)
.+-.|--++.|...|.-. -..|.+-|-.... .....-.-+..+++.+++.... .+...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~-----~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDV-----PRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcccc-----chHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998776654 2334444332110 1122333467788888876544 23345666666666665
Q ss_pred Hhc
Q 000803 476 LVS 478 (1277)
Q Consensus 476 ~~~ 478 (1277)
.+-
T Consensus 312 aeL 314 (414)
T COG3903 312 AEL 314 (414)
T ss_pred HHH
Confidence 443
No 54
>PRK04195 replication factor C large subunit; Provisional
Probab=98.32 E-value=5.3e-05 Score=90.22 Aligned_cols=246 Identities=16% Similarity=0.150 Sum_probs=138.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.++.++++.+|+..-... ...+.+.|+|++|+||||+|+.++++. .|+ .+-++.++..... ....
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el------~~~-~ielnasd~r~~~-~i~~ 83 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY------GWE-VIELNASDQRTAD-VIER 83 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc------CCC-EEEEcccccccHH-HHHH
Confidence 46899999999999998653211 225789999999999999999998854 232 2334444432222 2222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccH----HhHHhhhcccccCCCCcEEEEEcccc-cccc-c
Q 000803 222 LLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDY----SLWVDLKAPFLAAAPNSKMIITTRNS-HVAS-T 295 (1277)
Q Consensus 222 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~-~ 295 (1277)
++....... .....++-+||+|+++.... ..+..+...+. ..+..||+|+.+. .... .
T Consensus 84 ~i~~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 84 VAGEAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRE 147 (482)
T ss_pred HHHHhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhh
Confidence 222211100 01113678999999976422 22344444333 2344566666443 2211 1
Q ss_pred c-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhhcCC----ChhhHHHHHh
Q 000803 296 M-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT----TYDMWDDILD 370 (1277)
Q Consensus 296 ~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L~~~----~~~~w~~~l~ 370 (1277)
+ .....+.+.+++.++....+.+.+..... ....+....|++.++|-.-.+......+... +.+....+..
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi----~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~ 223 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGI----ECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR 223 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc
Confidence 1 22356899999999998888776643221 1224567789999999776554433333322 3333333321
Q ss_pred hcccCCCCCCChHHHHHHhhh-cCChhhhHHHhHhcccCCCceeChHHHHHHHHhCCcccc
Q 000803 371 SKIWDLPRQSSILPVLRLSYH-HLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQ 430 (1277)
Q Consensus 371 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cf~~~s~fp~~~~i~~~~li~~w~a~g~i~~ 430 (1277)
......++.++..-+. .-+......+.. ..++. ..+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCH-HHHHHHHHhccccc
Confidence 1113567777776665 222333332222 12233 35678999999865
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=1.5e-05 Score=90.98 Aligned_cols=191 Identities=16% Similarity=0.191 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.+++...... ... ..+...-...++
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~--~~~-------~~pc~~c~~c~~ 81 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQN--GIT-------SNPCRKCIICKE 81 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCC--CCC-------CCCCCCCHHHHH
Confidence 368899999999888876532 235678999999999999999987432111 000 000000000111
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-c
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-H 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~ 291 (1277)
+...... ........+++.+.+... ..+++-++|+|++.......++.+...+.......++|++|.+. .
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 1110000 000001222222211111 12456699999998876667777777766555667777776543 2
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
+...+ +....+++.+++.++..+.+...+.... ....++.++.|++.++|.|-.+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 32221 2235789999999999988877663221 1123456677999999988643
No 56
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.1e-06 Score=90.76 Aligned_cols=51 Identities=24% Similarity=0.368 Sum_probs=33.8
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE 196 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 196 (1277)
.||||+++++++.+.+.... ....+.+.|+|.+|+|||+|+++++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~---~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQ---SGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTS---S-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH---cCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 38999999999999995211 1556899999999999999999998865443
No 57
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.30 E-value=2.9e-05 Score=92.10 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=114.9
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..+||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+..-.+. .+.|..+
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dv 90 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDY 90 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceE
Confidence 468999999999999886532 234667999999999999998876432211 0011112
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
++++.+.. ...+++.+.+... ..++.-++|||++.......|+.++..+-....+
T Consensus 91 iEIDAas~---------------------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~ 149 (830)
T PRK07003 91 VEMDAASN---------------------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPH 149 (830)
T ss_pred EEeccccc---------------------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCC
Confidence 22222211 1223333222221 1345568899999888777788888777665567
Q ss_pred cEEEEEccccc-ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch-HHHHHHH
Q 000803 281 SKMIITTRNSH-VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP-LAAKTLG 354 (1277)
Q Consensus 281 s~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 354 (1277)
.++|+||.+.. +...+ .....+.++.++.++..+.+.+.+..... ....+..+.|++.++|.. -|+..+-
T Consensus 150 v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI----~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI----AFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred eEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 88877777643 32221 22357999999999999988876632211 223456678999998865 4555543
No 58
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=1.5e-05 Score=96.54 Aligned_cols=184 Identities=16% Similarity=0.181 Sum_probs=113.1
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----------------CCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS-----------------GKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-----------------~~f~~~ 204 (1277)
..+||.+.-++.|.+++.... -...+.++|+.|+||||+|+.+++..-.... +.|..+
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dv 90 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDL 90 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceE
Confidence 368999999999988886532 2345689999999999999999875432110 011111
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-hhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEE
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKM 283 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 283 (1277)
+++.......+.. .+++ .+.+.. -..+++-++|||++.......++.++..+-......++
T Consensus 91 iEidAas~~kVDd-IReL-----------------ie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrF 152 (944)
T PRK14949 91 IEVDAASRTKVDD-TREL-----------------LDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKF 152 (944)
T ss_pred EEeccccccCHHH-HHHH-----------------HHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEE
Confidence 2221111111111 1111 111111 12467789999999888777888887777655556777
Q ss_pred EEEcccc-ccccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 284 IITTRNS-HVAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 284 ivTtr~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
|++|.+. .+... ......|.+++++.++..+.+.+.+-... .....+..+.|++.++|.|--+..
T Consensus 153 ILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg----I~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 153 LLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ----LPFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred EEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHH
Confidence 6666543 33322 12236799999999999998887653211 122345667899999998854433
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.26 E-value=1.7e-05 Score=90.99 Aligned_cols=197 Identities=15% Similarity=0.126 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcc-eEEEEEeCCCcCH-HHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFD-VKAWVCVSDDFDV-LSIS 219 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~-~~~wv~~s~~~~~-~~~~ 219 (1277)
..++|++..++.+.+++... ..+.+.++|+.|+||||+|+.+.+..... .+. ..+.+++++-.+. ....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~---~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGD---PWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCc---ccccceEEechhhhhhcchhhh
Confidence 46889999999998887542 33467899999999999999987743211 111 1344444321100 0000
Q ss_pred H---HHHHHhcCC-CCCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc
Q 000803 220 K---ALLESITSA-TCDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 220 ~---~il~~l~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
. .....++.. .......+.....++... .+.+-+||+||+.......+..+...+......+++|+||...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~ 165 (337)
T PRK12402 86 VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQP 165 (337)
T ss_pred hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCCh
Confidence 0 000000000 000111222222222221 2344589999997654444444554444444567788877543
Q ss_pred -cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 291 -HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 291 -~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
.+...+ .....+.+.+++.++..+++...+-.... ....+..+.+++.++|.+-.+.
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~----~~~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV----DYDDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 222211 22246888999999998888876632211 1235667788999988765544
No 60
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.8e-06 Score=99.81 Aligned_cols=194 Identities=19% Similarity=0.170 Sum_probs=113.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|-+.-++.+..++.... -...+.++|++|+||||+|+.+++...... .+...+|.|.+... +....+.
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~--~~~~~cg~C~sc~~-i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSG--EDPKPCGECESCLA-VRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccC--CCCCCCCcChhhHH-HhcCCCC
Confidence 368999988888888876542 235679999999999999999987543222 22223333321100 0000000
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHh-----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cccccc
Q 000803 222 LLESITSATCDLKTVDEVQVQLKKA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SHVAST 295 (1277)
Q Consensus 222 il~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~v~~~ 295 (1277)
-...+... .....+.+.+ +++. ..+++-++|+|+++......+..+...+........+|++|.. ..+...
T Consensus 86 dv~el~~~--~~~~vd~iR~-l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~ 162 (504)
T PRK14963 86 DVLEIDAA--SNNSVEDVRD-LREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPT 162 (504)
T ss_pred ceEEeccc--ccCCHHHHHH-HHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChH
Confidence 00000000 1112222222 2222 2346678999999887767788887777665556666655543 333322
Q ss_pred c-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 296 M-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 296 ~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
+ .....+.+.+++.++..+.+.+.+-.... ...++....|++.++|.+--+
T Consensus 163 I~SRc~~~~f~~ls~~el~~~L~~i~~~egi----~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 163 ILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR----EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred HhcceEEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2 22357999999999999999887743221 123456778999999988544
No 61
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.25 E-value=4.8e-06 Score=89.12 Aligned_cols=168 Identities=14% Similarity=0.123 Sum_probs=96.8
Q ss_pred hhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 148 EEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
+..++.+.+++.. .....+.|+|..|+|||+||+.+++.... .....++++++.-.. ..
T Consensus 23 ~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~----~~~~~~~i~~~~~~~------~~----- 81 (226)
T TIGR03420 23 AELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEE----RGKSAIYLPLAELAQ------AD----- 81 (226)
T ss_pred HHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHh----cCCcEEEEeHHHHHH------hH-----
Confidence 3455666655432 23467899999999999999999875321 222345665433211 00
Q ss_pred CCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHH-hHH-hhhccccc-CCCCcEEEEEcccccc---------ccc
Q 000803 228 SATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYS-LWV-DLKAPFLA-AAPNSKMIITTRNSHV---------AST 295 (1277)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~-~l~~~l~~-~~~~s~iivTtr~~~v---------~~~ 295 (1277)
.. +.+.+++. -+||+||++..... .|. .+...+.. ...+.++|+||+.... ...
T Consensus 82 ---------~~----~~~~~~~~-~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------PE----VLEGLEQA-DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------HH----HHhhcccC-CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 00 11112222 38999999764321 232 23332222 1234588898875321 112
Q ss_pred cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 296 MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 296 ~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
+.....+++.+++.++...++...+-... ....++..+.+++.+.|.|..+.-+.
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG----LQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 22235689999999999999877553211 12234566778888999998776554
No 62
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=1.2e-06 Score=70.71 Aligned_cols=56 Identities=32% Similarity=0.487 Sum_probs=35.0
Q ss_pred eeeEEecCCCCCCCCC-cCCCCCCccceeeccCCcccccc-ccccccccCcEEEecCC
Q 000803 554 KLRLLSLQGYYIGELP-IPFEDLRLLRYLNLADTDIRSLP-ESSCSLLNLEILILRNC 609 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 609 (1277)
+|++|++++|.+..+| ..|..+++|++|++++|.++.+| ..|..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4666666666666665 45566666666666666666654 35566666666666664
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=2e-05 Score=92.34 Aligned_cols=192 Identities=15% Similarity=0.136 Sum_probs=112.3
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+||.+...+.+.+++.... -...+.++|+.|+||||+|+.+++..-... ++.. .....-...+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~--------~~~~-~pCg~C~sC~~ 80 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET--------GVTS-TPCEVCATCKA 80 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc--------CCCC-CCCccCHHHHH
Confidence 468999999999999886542 236788999999999999999876432111 1100 00011111111
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccc-
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSH- 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~- 291 (1277)
+...-.. ........+++.+.+... ..+++-++|+|++.......+..+...+-....+.++|++|.+..
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 1100000 000111233332222211 235667899999988766677777776655556677777776532
Q ss_pred cccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 292 VAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 292 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
+... ......+++++++.++..+.+.+.+-..+. ....+....|++.++|.+-.+.
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI----~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQI----AADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 2211 122357999999999999888776643221 2234556779999999775443
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.21 E-value=1e-05 Score=80.28 Aligned_cols=125 Identities=20% Similarity=0.163 Sum_probs=72.5
Q ss_pred ccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHH
Q 000803 145 FGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLE 224 (1277)
Q Consensus 145 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~ 224 (1277)
+|++..++.+...+... ..+.+.|+|.+|+|||++|+.+++..... -..++++...+..........+..
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~ 70 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFRP----GAPFLYLNASDLLEGLVVAELFGH 70 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhcC----CCCeEEEehhhhhhhhHHHHHhhh
Confidence 47888888888887542 23578999999999999999999865311 124566665544332221111100
Q ss_pred HhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc---HHhHHhhhcccccC---CCCcEEEEEccccc
Q 000803 225 SITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED---YSLWVDLKAPFLAA---APNSKMIITTRNSH 291 (1277)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~---~~~s~iivTtr~~~ 291 (1277)
. ............++.++|+||++... ...+......+... ..+.+||+||....
T Consensus 71 ~------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 71 F------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred h------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0 00111122234567899999998531 22233333333221 36788888888654
No 65
>PLN03150 hypothetical protein; Provisional
Probab=98.20 E-value=1.6e-06 Score=106.31 Aligned_cols=104 Identities=24% Similarity=0.270 Sum_probs=86.2
Q ss_pred eeeEEecCCCCCC-CCCcCCCCCCccceeeccCCccc-cccccccccccCcEEEecCCcCccccchhhccccCcCeeeec
Q 000803 554 KLRLLSLQGYYIG-ELPIPFEDLRLLRYLNLADTDIR-SLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIR 631 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 631 (1277)
.++.|+|++|.+. .+|..|+.+.+|++|+|++|.+. .+|..++.+.+|++|||++|.....+|..+++|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999875 67889999999999999999998 889999999999999999976666899999999999999999
Q ss_pred CccccccCCCCCCCC-CCCcccCceee
Q 000803 632 GAILLKEMPFGMKEL-KNLQTLSNFVV 657 (1277)
Q Consensus 632 ~~~~l~~~p~~i~~L-~~L~~L~~~~~ 657 (1277)
+|.....+|..++.+ .++..+++..+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCC
Confidence 998666888877653 34445544333
No 66
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.19 E-value=6.4e-08 Score=103.47 Aligned_cols=109 Identities=15% Similarity=0.210 Sum_probs=63.1
Q ss_pred CccEEEEcCCCCCCCCC---CCCCCCCCceeeeccCCCceEeccccccccccCCCcccceeeeccCccccccc-cccccc
Q 000803 762 KMNVLELDDCWNCTSLP---SLGLLSSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWD-TNVDRN 837 (1277)
Q Consensus 762 ~L~~L~L~~~~~~~~l~---~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~-~~~~~~ 837 (1277)
.|+.|.+++|.....-+ .....|++++|.+.+|..+++..... .....++|+.+.+..|+.++... .....
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~s----la~~C~~l~~l~L~~c~~iT~~~Lk~la~- 213 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLS----LARYCRKLRHLNLHSCSSITDVSLKYLAE- 213 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHH----HHHhcchhhhhhhcccchhHHHHHHHHHH-
Confidence 45666666665433222 23356777777777776554432221 12346777888887777777655 21222
Q ss_pred cccccCCcccEEeeecCCCCcc----CCCCCCCCccEEEEeccccc
Q 000803 838 EHVEIFPRLQKLSIVECPELSG----KVPELLPSLKTLVVSKCQKL 879 (1277)
Q Consensus 838 ~~~~~~p~L~~L~l~~c~~L~~----~~p~~l~~L~~L~l~~~~~l 879 (1277)
.+|+|++|+++.|+.+++ .+..+...++.+-..||...
T Consensus 214 ----gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~ 255 (483)
T KOG4341|consen 214 ----GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL 255 (483)
T ss_pred ----hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc
Confidence 588899999999988775 12223344555555566543
No 67
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.19 E-value=2.8e-07 Score=102.33 Aligned_cols=114 Identities=22% Similarity=0.292 Sum_probs=92.7
Q ss_pred eeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecCc
Q 000803 554 KLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGA 633 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 633 (1277)
-|++|-+++|+++.+|+.++.+.+|..||.+.|.+..+|..++.|..|+.|.++. +.+..+|+.+. --.|..||++.|
T Consensus 144 pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~-~LpLi~lDfScN 221 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELC-SLPLIRLDFSCN 221 (722)
T ss_pred cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHh-CCceeeeecccC
Confidence 4788888888888888888888888888888888888888888888888888888 47788888887 445888888877
Q ss_pred cccccCCCCCCCCCCCcccCceeeCCCCCCCCChhccc
Q 000803 634 ILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLEDLK 671 (1277)
Q Consensus 634 ~~l~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~L~ 671 (1277)
+ +..+|..|.+|+.||+|.+-+|...+. +..|...+
T Consensus 222 k-is~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kG 257 (722)
T KOG0532|consen 222 K-ISYLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKG 257 (722)
T ss_pred c-eeecchhhhhhhhheeeeeccCCCCCC-hHHHHhcc
Confidence 6 888898899999999998888877663 44454443
No 68
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.18 E-value=3.7e-07 Score=92.79 Aligned_cols=107 Identities=23% Similarity=0.230 Sum_probs=53.1
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
..-.+.+|+|++++|.|..+.+ +..|.+|..||||+|.+.++-..-.+|-|.++|.|++| .++.+. ++++|.+|..|
T Consensus 303 vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~KLYSLvnL 379 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS-GLRKLYSLVNL 379 (490)
T ss_pred hhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHhhhhheec
Confidence 3344455555555555544422 44455555555555555554444445555555555552 344332 25555555555
Q ss_pred eecCccccccCC--CCCCCCCCCcccCceeeCC
Q 000803 629 DIRGAILLKEMP--FGMKELKNLQTLSNFVVGK 659 (1277)
Q Consensus 629 ~l~~~~~l~~~p--~~i~~L~~L~~L~~~~~~~ 659 (1277)
|+++|+ ++.+. .+||+|+.|++|.+.+|..
T Consensus 380 Dl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 380 DLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred cccccc-hhhHHHhcccccccHHHHHhhcCCCc
Confidence 555554 44332 2355555555555555543
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.17 E-value=2.4e-07 Score=94.16 Aligned_cols=124 Identities=21% Similarity=0.218 Sum_probs=99.5
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
....+.|..|||++|.|+.+-+++.-++.+|.|++|+|.|..+-. +..|++|+.|||++| .+.++-..=.+|.|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 345678999999999999999898889999999999999998854 889999999999995 677776655788999999
Q ss_pred eecCccccccCCCCCCCCCCCcccCceeeCCCCC-CCCChhcccccccc
Q 000803 629 DIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGE-TASGLEDLKILKFL 676 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~~-~~~~~~~L~~L~~L 676 (1277)
.+++|. ++.+ .++++|-+|..|++..|.+... ....|+.|+.|..+
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 999986 6555 4789999999999988876542 13345555555544
No 70
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.17 E-value=3.8e-07 Score=98.25 Aligned_cols=66 Identities=14% Similarity=0.142 Sum_probs=37.9
Q ss_pred CCccCccEEEEeeeCCCCCCcccCCCCCCCccEEEEcCCCCCC--CCCCCCCCCCCceeeeccCCCceEe
Q 000803 733 QPYKFVKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCT--SLPSLGLLSSLRDLTIKRMTNLKSI 800 (1277)
Q Consensus 733 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~--~l~~l~~l~~L~~L~l~~~~~l~~i 800 (1277)
..+|+|+.|.+.+|..... .......+..|+.|+|++|.... .++..+.+|.|..|.++.+ ++..+
T Consensus 219 ~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si 286 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASI 286 (505)
T ss_pred HhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-Ccchh
Confidence 3455566666655531110 00111126678888888886543 3457788888888888764 44433
No 71
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=9.8e-05 Score=83.08 Aligned_cols=206 Identities=16% Similarity=0.151 Sum_probs=127.4
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKAL 222 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 222 (1277)
.+.+|+++++++...|...-.. ..+.-+.|+|..|.|||+.++.+.+....... .. .+++|++-...+..+++.+|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-~~-~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSA-NV-EVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-cC-ceEEEeeeeCCCHHHHHHHH
Confidence 3889999999999887654322 22334899999999999999999986544321 11 27899999999999999999
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHHhhc--CceEEEEecCcccccHHhHHhhhcccccCC-CCcEEEE--Eccccc------
Q 000803 223 LESITSATCDLKTVDEVQVQLKKAVD--GKRFLLVLDDVWNEDYSLWVDLKAPFLAAA-PNSKMII--TTRNSH------ 291 (1277)
Q Consensus 223 l~~l~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~~s~iiv--Ttr~~~------ 291 (1277)
+.+++..........+..+.+.+.+. ++.++||||+++.-....-+.+-.-+.... ..++|++ .+-+..
T Consensus 94 ~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 94 LNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhh
Confidence 99998544444555666666666664 578999999995421111011111121111 2454433 333322
Q ss_pred --cccccCCCceeecCCCCHHHHHHHHHHhhcCCC-CCCchhhHHHHHHHHHhhcC-CchHHHHHH
Q 000803 292 --VASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGR-DHNALEISESFRKKVVGKCG-GLPLAAKTL 353 (1277)
Q Consensus 292 --v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c~-glPLai~~~ 353 (1277)
|....+. ..+...|-+.+|-...+..++-.+. +....+..-+.+..++..-+ --=.||.++
T Consensus 174 ~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 174 PRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 2233333 3378899999999999988874322 22222223333444444444 444555544
No 72
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=3.6e-05 Score=90.03 Aligned_cols=197 Identities=16% Similarity=0.157 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-CCcceEEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS-GKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
..+||-+.-++.|.+++.... -...+.++|..|+||||+|+.+.+..-.... +... + .+.....-...+
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g----~-~~~PCG~C~sC~ 85 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG----I-TAQPCGQCRACT 85 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc----C-CCCCCcccHHHH
Confidence 468999999999999886642 2356789999999999999988764322100 0000 0 000000011111
Q ss_pred HHHHH-----hcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcc-cc
Q 000803 221 ALLES-----ITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTR-NS 290 (1277)
Q Consensus 221 ~il~~-----l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr-~~ 290 (1277)
.|... +..+.......+++.+.+... ..+++-++|+|+++..+...++.++..+-.-..+.++|++|. ..
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~ 165 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQ 165 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChH
Confidence 11100 000000112234433333322 245667999999988877788888877765455666555554 44
Q ss_pred cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 291 HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 291 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
.+...+ .....+.++.++.++..+.+.+.+..... ....+..+.|++.++|.|.....
T Consensus 166 kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi----~~d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 166 KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI----AHEVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 443222 12256899999999999888776532111 11234557799999999865443
No 73
>PLN03025 replication factor C subunit; Provisional
Probab=98.14 E-value=3.8e-05 Score=86.36 Aligned_cols=181 Identities=11% Similarity=0.123 Sum_probs=104.0
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcc-eEEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFD-VKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~ 220 (1277)
..++|.++.++.+..++.. ++.+.+-++|++|+||||+|..+++..... .|. .++-++.++..... ..+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~------~~~~~lll~Gp~G~GKTtla~~la~~l~~~---~~~~~~~eln~sd~~~~~-~vr 82 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARD------GNMPNLILSGPPGTGKTTSILALAHELLGP---NYKEAVLELNASDDRGID-VVR 82 (319)
T ss_pred HHhcCcHHHHHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHHhcc---cCccceeeecccccccHH-HHH
Confidence 3578988888887776643 233457799999999999999998753211 221 12222223222221 122
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CC
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GP 298 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~ 298 (1277)
+++..+...... .-.++.-++|+|+++.........+...+-.....+++|+++... .+...+ ..
T Consensus 83 ~~i~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR 149 (319)
T PLN03025 83 NKIKMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR 149 (319)
T ss_pred HHHHHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh
Confidence 222211100000 002456799999998776555555655554444567777766543 221111 11
Q ss_pred CceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHH
Q 000803 299 IDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 299 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
...++++++++++....+...+-..+. ....+..+.|++.++|-.-.
T Consensus 150 c~~i~f~~l~~~~l~~~L~~i~~~egi----~i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 150 CAIVRFSRLSDQEILGRLMKVVEAEKV----PYVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHH
Confidence 246899999999999888877632211 12245667889999987643
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.13 E-value=1.5e-05 Score=89.72 Aligned_cols=199 Identities=16% Similarity=0.108 Sum_probs=114.3
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcce-EEEEEeCCCcCHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDV-KAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~ 219 (1277)
-..++|.++..+.+.+.+.... -...+-++|+.|+||+|+|..+.+..-......... ..=.........-...
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 3578999999999998886642 235688999999999999987765332111000000 0000000000000111
Q ss_pred HHHHHHhcC----------CC----CCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 220 KALLESITS----------AT----CDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 220 ~~il~~l~~----------~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
+.+...-.. .. .....++++. .+.+++ .+++-++|+||+...+......+...+.....+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR-~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVR-ELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHH-HHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 111110000 00 0112344433 333333 356679999999888878788887777655556
Q ss_pred cEEEEEccccc-ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 281 SKMIITTRNSH-VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 281 s~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+.+|++|...+ +...+ .....+.+.+++.++..+++...... . . .+....+++.++|.|.....+
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~----~-~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD----L-P---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc----C-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 77777776653 32221 22357999999999999998875421 0 1 112257899999999866544
No 75
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=5.1e-05 Score=88.77 Aligned_cols=194 Identities=16% Similarity=0.192 Sum_probs=112.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcce-EEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDV-KAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~-~~wv~~s~~~~~~~~~~ 220 (1277)
..++|-+.-+..+...+.... -...+.++|+.|+||||+|+.+++..-... .... ..+. ....-....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~--~~~~~~~~~----~C~~C~~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSA--LITENTTIK----TCEQCTNCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCcc--ccccCcCcC----CCCCChHHH
Confidence 367899998888887775532 235788999999999999999987442211 0000 0000 000000011
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEE-Ecccc
Q 000803 221 ALLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMII-TTRNS 290 (1277)
Q Consensus 221 ~il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv-Ttr~~ 290 (1277)
.+...... ........+++...+... +.+++-++|+|+++......|+.+...+......+.+|+ ||+..
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 11100000 000112233333333221 245677899999988777788888877766555666655 44444
Q ss_pred cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 291 HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 291 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
.+...+ .....+++++++.++..+.+.+.+-..+. ....+..+.|++.++|.+--+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi----~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL----KTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 443322 22256899999999999999887743221 122445667999999977443
No 76
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.2e-05 Score=87.81 Aligned_cols=185 Identities=19% Similarity=0.231 Sum_probs=106.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc-----------------CCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS-----------------GKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-----------------~~f~~~ 204 (1277)
..+||.+.....+...+... .-...+.++|++|+||||+|+.+++....... +.+..+
T Consensus 14 ~divGq~~i~~~L~~~i~~~-----~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKN-----SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 46899988877777766543 22356789999999999999999774322110 000011
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-----hcCceEEEEecCcccccHHhHHhhhcccccCCC
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAP 279 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 279 (1277)
..++.+... ..+++. .+.+. ..+++-++|+|+++.......+.+...+.....
T Consensus 89 ~el~aa~~~---------------------gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 89 IELDAASNR---------------------GIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPS 146 (472)
T ss_pred EEEeCcccC---------------------CHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCC
Confidence 222221111 122221 12211 235667999999976554555666655544334
Q ss_pred CcEEEEEccc-ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCC-chHHHHHHHhh
Q 000803 280 NSKMIITTRN-SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGG-LPLAAKTLGGL 356 (1277)
Q Consensus 280 ~s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLai~~~~~~ 356 (1277)
...+|++|.+ ..+...+ .....+.+.+++.++....+.+.+..... ...++....|++.++| .+.|+..+..+
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi----~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI----EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4554444433 3332222 22357899999999998888877642211 2234566778887755 56777776554
Q ss_pred h
Q 000803 357 L 357 (1277)
Q Consensus 357 L 357 (1277)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 3
No 77
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.12 E-value=4.9e-05 Score=86.40 Aligned_cols=180 Identities=16% Similarity=0.165 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe--CCCcCHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV--SDDFDVLSIS 219 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~--s~~~~~~~~~ 219 (1277)
..++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++..... .+. ..++.+ +...... ..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~---~~~-~~~i~~~~~~~~~~~-~~ 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGE---DWR-ENFLELNASDERGID-VI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCC---ccc-cceEEeccccccchH-HH
Confidence 35889999999999888542 23457999999999999999998753221 111 112222 2221111 11
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-C
Q 000803 220 KALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-G 297 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~ 297 (1277)
++.+..+.... ......+-++|+|+++......+..+...+......+++|+++... .+.... .
T Consensus 86 ~~~i~~~~~~~--------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s 151 (319)
T PRK00440 86 RNKIKEFARTA--------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS 151 (319)
T ss_pred HHHHHHHHhcC--------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH
Confidence 11111111000 0011235689999986654444555555554444567777776432 221111 1
Q ss_pred CCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 298 PIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 298 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
....+.+.+++.++....+...+....- ...++..+.+++.++|.+--+
T Consensus 152 r~~~~~~~~l~~~ei~~~l~~~~~~~~~----~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 152 RCAVFRFSPLKKEAVAERLRYIAENEGI----EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred HhheeeeCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 2246889999999998888877642211 223456778899999987653
No 78
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=4.6e-05 Score=89.68 Aligned_cols=186 Identities=16% Similarity=0.151 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..++|.+..++.+...+.... -...+.++|+.|+||||+|+.+++...... .+.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 368899999999888886532 235678999999999999999876332110 0012222
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEE
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKM 283 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 283 (1277)
+++.......+.+ ..++.+.+... ..+++-++|+|++.......++.++..+-.....+.+
T Consensus 91 ieidaas~~gvd~------------------ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGVEE------------------TKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCHHH------------------HHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 2332222111111 11222222211 2356679999999877777778887777665556666
Q ss_pred EEEc-cccccccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch-HHHHHHH
Q 000803 284 IITT-RNSHVAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP-LAAKTLG 354 (1277)
Q Consensus 284 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 354 (1277)
|++| ....+... ......+++++++.++..+.+.+.+-... ....++....|++.++|.+ -|+..+-
T Consensus 153 IL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg----i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 153 ILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN----INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 6544 43333322 12236799999999998877776543211 1223455667999999966 4555443
No 79
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.12 E-value=8e-05 Score=83.53 Aligned_cols=199 Identities=16% Similarity=0.185 Sum_probs=116.6
Q ss_pred CCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 140 TEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 140 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.-..++|-++..+.+...+.... -...+.|+|+.|+||||+|..+.+..-......+... ............
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34578999999999999886542 2357899999999999999988764422110001111 000111111122
Q ss_pred HHHHHH-------hcCC--C-----CCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 220 KALLES-------ITSA--T-----CDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 220 ~~il~~-------l~~~--~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
+.+... +... . .....++++. .+.+++ .+++-++|+|+++..+....+.+...+-....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 332221 1000 0 0112244433 344443 356679999999888777777777766554445
Q ss_pred cEEEEEc-ccccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 281 SKMIITT-RNSHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 281 s~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
..+|++| +...+.... .....+.+.+++.++..+++...... .. ..++....+++.++|.|.....+
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~---~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS---QG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc---cC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5555544 433332221 22357999999999999999874321 11 12345678999999999866544
No 80
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.12 E-value=3e-05 Score=82.57 Aligned_cols=153 Identities=15% Similarity=0.130 Sum_probs=91.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
.+.+.|+|+.|+|||+||+.+++.... .-..+.++++..... ...+..+.+.+
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~----~~~~v~y~~~~~~~~--------------------~~~~~~~~~~~--- 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ----RGRAVGYVPLDKRAW--------------------FVPEVLEGMEQ--- 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh----CCCeEEEEEHHHHhh--------------------hhHHHHHHhhh---
Confidence 357899999999999999999874321 112455666532100 00111111211
Q ss_pred CceEEEEecCcccccH-HhHHhhh-cccccC-CCC-cEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHH
Q 000803 249 GKRFLLVLDDVWNEDY-SLWVDLK-APFLAA-APN-SKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSI 315 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~-~~~~~l~-~~l~~~-~~~-s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 315 (1277)
--++++||+..... ..|.... ..+... ..| .++|+||+.. ++.+.+.....++++++++++-.++
T Consensus 98 --~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~ 175 (235)
T PRK08084 98 --LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA 175 (235)
T ss_pred --CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence 13789999965321 3444322 222211 123 4799998854 2333444556899999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 316 FKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
+.+++... . ....+++..-|++.+.|..-++..+-
T Consensus 176 l~~~a~~~-~---~~l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 176 LQLRARLR-G---FELPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHc-C---CCCCHHHHHHHHHhhcCCHHHHHHHH
Confidence 98766432 1 23346777888999888766554443
No 81
>PRK08727 hypothetical protein; Validated
Probab=98.12 E-value=3.9e-05 Score=81.59 Aligned_cols=148 Identities=17% Similarity=0.102 Sum_probs=88.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
..+.|+|..|+|||+||+.+++.... ....+.|+++.+ ....+. + .+.. + .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~----~~~~~~y~~~~~------~~~~~~--------------~---~~~~-l-~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQ----AGRSSAYLPLQA------AAGRLR--------------D---ALEA-L-E 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEeHHH------hhhhHH--------------H---HHHH-H-h
Confidence 45999999999999999999875322 222456666432 111111 1 1111 1 1
Q ss_pred ceEEEEecCccccc-HHhHHhhhccccc--CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNED-YSLWVDLKAPFLA--AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 250 kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
+.-+||+||+.... ...|......+.+ ...|..||+|++.. ++.+.+.....+++++++.++-.+++.
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 23589999996432 1223322222222 13467799999853 222333334578999999999999999
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 318 THAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
+++.... ....++...-|++.++|-.-.+
T Consensus 173 ~~a~~~~----l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 173 ERAQRRG----LALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhCCCCHHHH
Confidence 8775321 1233566778888888766544
No 82
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.11 E-value=4.7e-06 Score=88.20 Aligned_cols=90 Identities=22% Similarity=0.207 Sum_probs=62.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCCcHH------HHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD--FDVLSISKALLESITSATCDLKTVD------EVQ 240 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~ 240 (1277)
-..++|+|++|+|||||++.+|++.... +|+.++|+.+... +++.++++.+...+-....+..... ...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~---~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN---HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc---cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999976443 7999999997776 7899999888444433322221111 112
Q ss_pred HHHHHh-hcCceEEEEecCccc
Q 000803 241 VQLKKA-VDGKRFLLVLDDVWN 261 (1277)
Q Consensus 241 ~~l~~~-l~~kr~LlVlDdv~~ 261 (1277)
.....+ -+++++++++|++..
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r 114 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITR 114 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHH
Confidence 222222 358999999999944
No 83
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=7.1e-05 Score=85.14 Aligned_cols=181 Identities=16% Similarity=0.120 Sum_probs=108.0
Q ss_pred ccccchhhHHHHHHHHhccccc----CCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCc
Q 000803 143 VVFGREEDKTKILEMVLTDTAA----DHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKF 201 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f 201 (1277)
.++|-+.-++.+.+++...... ...-...+-++|+.|+|||++|..+++..-... +.|.
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hp 85 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHP 85 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 5789999999998888764210 001246688999999999999998865322111 0111
Q ss_pred ceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccC
Q 000803 202 DVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA 277 (1277)
Q Consensus 202 ~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~ 277 (1277)
|. .++.... .....+++.+.+... ..+++-++|+|++........+.+...+-..
T Consensus 86 D~-~~i~~~~--------------------~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep 144 (394)
T PRK07940 86 DV-RVVAPEG--------------------LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEP 144 (394)
T ss_pred CE-EEecccc--------------------ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcC
Confidence 11 1111100 111223322222111 1345568888999887766667777666555
Q ss_pred CCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 278 APNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 278 ~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
..+..+|++|.+. .+...+ .....+.+++++.++..+.+..... ..++.+..+++.++|.|.....+
T Consensus 145 ~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~---------~~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 145 PPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG---------VDPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC---------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5566666666553 333221 2235799999999999888874321 11345678999999999755443
No 84
>PRK09087 hypothetical protein; Validated
Probab=98.08 E-value=4.1e-05 Score=80.51 Aligned_cols=140 Identities=15% Similarity=0.120 Sum_probs=86.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+.+.|+|..|+|||+|++.++.... ..+++.. ....++...+ .+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~---------~~~i~~~------~~~~~~~~~~---------------------~~ 88 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSD---------ALLIHPN------EIGSDAANAA---------------------AE 88 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcC---------CEEecHH------HcchHHHHhh---------------------hc
Confidence 5689999999999999999886421 1233321 1111111111 11
Q ss_pred ceEEEEecCcccc--cHHhHHhhhcccccCCCCcEEEEEccc---------cccccccCCCceeecCCCCHHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNE--DYSLWVDLKAPFLAAAPNSKMIITTRN---------SHVASTMGPIDHYNLEHLLDDDCWSIFKT 318 (1277)
Q Consensus 250 kr~LlVlDdv~~~--~~~~~~~l~~~l~~~~~~s~iivTtr~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 318 (1277)
-+|++||+... ++..+..+...+. ..|..||+|++. +++.+.+.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999542 2222222222222 236789998874 33444455557899999999999999998
Q ss_pred hhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 319 HAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
++-.. . ....+++.+-|++.+.|..-++..+
T Consensus 165 ~~~~~-~---~~l~~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 165 LFADR-Q---LYVDPHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHc-C---CCCCHHHHHHHHHHhhhhHHHHHHH
Confidence 88432 1 2234567778888888887766643
No 85
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.07 E-value=3.4e-05 Score=91.50 Aligned_cols=180 Identities=16% Similarity=0.166 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..+||.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+..-... .+.|..+
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dv 90 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDL 90 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccce
Confidence 468999999999999887542 235789999999999999998876432111 0001111
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
+.+.... ....+++.+.+... ..+++-++|+|++..........++..+-.....
T Consensus 91 lEidaAs---------------------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~ 149 (709)
T PRK08691 91 LEIDAAS---------------------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (709)
T ss_pred EEEeccc---------------------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC
Confidence 1222111 12223332222211 2356678999999876655566666666544456
Q ss_pred cEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 281 SKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 281 s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
+++|++|.+. .+...+ +....+.+++++.++....+.+.+-..+. ....+..+.|++.++|.+.-+.
T Consensus 150 v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi----~id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 150 VKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI----AYEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC----CcCHHHHHHHHHHhCCCHHHHH
Confidence 6777766543 222211 22245888899999998888876642211 2234566789999999885443
No 86
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=6.2e-05 Score=86.02 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+..+..+..++.... -...+.++|+.|+||||+|+.+++.........+. .+..| .. .+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~-pCg~C----~s----C~~ 83 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNE-PCNEC----TS----CLE 83 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCcc-ccCCC----cH----HHH
Confidence 468999988888888876532 12467899999999999999998754322100000 00000 00 111
Q ss_pred HHHHhcCC-----CCCCCcHHHH---HHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEE-ccccc
Q 000803 222 LLESITSA-----TCDLKTVDEV---QVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIIT-TRNSH 291 (1277)
Q Consensus 222 il~~l~~~-----~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivT-tr~~~ 291 (1277)
+....... .......+++ .+.+... ..+++-++|+|++.......++.++..+-.......+|.+ |....
T Consensus 84 i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~k 163 (484)
T PRK14956 84 ITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHK 163 (484)
T ss_pred HHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhh
Confidence 11111100 0011112222 2222211 2456679999999888778888887777554445555544 44444
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
+...+ .....|.+++++.++..+.+.+.+-..+ ....++....|++.++|.+--
T Consensus 164 I~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg----i~~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 164 IPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN----VQYDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred ccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCChHHH
Confidence 43222 2235699999999999888877663221 122345667899999998853
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.06 E-value=8.5e-05 Score=85.79 Aligned_cols=184 Identities=17% Similarity=0.197 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc------------------CCcce
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS------------------GKFDV 203 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~------------------~~f~~ 203 (1277)
..++|.+..++.+.+++... .-...+-++|+.|+||||+|+.+......... .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 35789999999999888653 22357789999999999999888764321110 12222
Q ss_pred EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcE
Q 000803 204 KAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSK 282 (1277)
Q Consensus 204 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 282 (1277)
+++......... ..+++... +... ..+++-++|+|++.......+..+...+......+.
T Consensus 89 -~~~~~~~~~~~~-~~~~l~~~-----------------~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~ 149 (355)
T TIGR02397 89 -IEIDAASNNGVD-DIREILDN-----------------VKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVV 149 (355)
T ss_pred -EEeeccccCCHH-HHHHHHHH-----------------HhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcccee
Confidence 222221111111 11122221 1111 224555888999876555556666666644445667
Q ss_pred EEEEccccc-ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 283 MIITTRNSH-VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 283 iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+|++|.+.. +...+ .....+++.+++.++..+.+...+-..+. ...++.+..+++.++|.|..+...
T Consensus 150 lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~----~i~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 150 FILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI----KIEDEALELIARAADGSLRDALSL 218 (355)
T ss_pred EEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCChHHHHHH
Confidence 667765433 22111 22256888999999998888876632211 122466778999999988665443
No 88
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=6.5e-05 Score=89.84 Aligned_cols=194 Identities=14% Similarity=0.137 Sum_probs=112.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+||.+.-++.+.+.+.... -...+.++|..|+||||+|+.+++..-... .+ . ......-...+.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~--~~------~-~~pCg~C~~C~~ 81 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCET--GI------T-ATPCGECDNCRE 81 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhcc--CC------C-CCCCCCCHHHHH
Confidence 468999999998888886532 234578999999999999999976432211 00 0 001111111222
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHH----hhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cc
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SH 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~ 291 (1277)
|...-.. ........+++.+.+.+ -..+++-++|+|++.......++.++..+-......++|.+|.+ ..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 2110000 00001123333222221 12466779999999888777788887776655556666665554 33
Q ss_pred cccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 292 VAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 292 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+... ......|.+++++.++..+.+.+.+-.... ...++....|++.++|.+-.+..+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i----~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI----PFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 122367999999999999888776522111 122345567999999987644433
No 89
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=4.8e-06 Score=67.22 Aligned_cols=58 Identities=33% Similarity=0.426 Sum_probs=50.8
Q ss_pred CccceeeccCCccccccc-cccccccCcEEEecCCcCccccch-hhccccCcCeeeecCcc
Q 000803 576 RLLRYLNLADTDIRSLPE-SSCSLLNLEILILRNCSSLIKLPS-KIRRLINLCHLDIRGAI 634 (1277)
Q Consensus 576 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 634 (1277)
++|++|++++|.++.+|. .|..+++|++|++++| .+..+|. .|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999975 7789999999999985 6777765 67999999999999986
No 90
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.05 E-value=9.4e-06 Score=89.03 Aligned_cols=90 Identities=21% Similarity=0.234 Sum_probs=62.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCCcHHH------HH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF--DVLSISKALLESITSATCDLKTVDE------VQ 240 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~------~~ 240 (1277)
-.-..|+|++|+||||||+++|++.... +|+.++||.+.+.. .+.++++.+...+-....+...... ..
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~n---hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~i 245 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTN---HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVI 245 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhh---cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999976544 79999999999887 7777887776433322222221111 11
Q ss_pred HHHHHh-hcCceEEEEecCccc
Q 000803 241 VQLKKA-VDGKRFLLVLDDVWN 261 (1277)
Q Consensus 241 ~~l~~~-l~~kr~LlVlDdv~~ 261 (1277)
+.-+.+ -.+++++|++|++..
T Consensus 246 e~Ae~~~e~G~dVlL~iDsItR 267 (416)
T PRK09376 246 EKAKRLVEHGKDVVILLDSITR 267 (416)
T ss_pred HHHHHHHHcCCCEEEEEEChHH
Confidence 111111 367999999999943
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.04 E-value=0.00011 Score=75.58 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=63.3
Q ss_pred CceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCC
Q 000803 249 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDH 326 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 326 (1277)
+.+-++|+||+.......++.+...+......+.+|++|++. .+...+ .....+.+.+++.++..+.+.+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g-i-- 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G-I-- 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C-C--
Confidence 566789999998766666777777776555567777777643 222211 12357999999999998888776 1 1
Q ss_pred CchhhHHHHHHHHHhhcCCchHH
Q 000803 327 NALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
.++.++.|++.++|.|..
T Consensus 170 -----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 -----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred -----CHHHHHHHHHHcCCCccc
Confidence 145678899999998853
No 92
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.03 E-value=6.3e-05 Score=78.87 Aligned_cols=187 Identities=14% Similarity=0.153 Sum_probs=101.6
Q ss_pred Cccccch-hhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGRE-EDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
..++|.. +..-.....+..... .....+.|+|..|+|||.|.+++++...... .-..+++++ ..+...
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~--~~~~v~y~~------~~~f~~ 77 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQH--PGKRVVYLS------AEEFIR 77 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHC--TTS-EEEEE------HHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhcc--ccccceeec------HHHHHH
Confidence 3445653 333444444544321 2344578999999999999999998643221 112355665 344555
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHH-hHHhhhccccc--CCCCcEEEEEccccc------
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYS-LWVDLKAPFLA--AAPNSKMIITTRNSH------ 291 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~~~l~~~l~~--~~~~s~iivTtr~~~------ 291 (1277)
.+...+.. ...++ +++.+++ -=+|++||++.-... .|......+.+ ...|.+||+|++...
T Consensus 78 ~~~~~~~~-----~~~~~----~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 78 EFADALRD-----GEIEE----FKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHHHT-----TSHHH----HHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHHHc-----ccchh----hhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCcccccc
Confidence 55555543 12222 3333332 347889999663322 23332222221 134778999996542
Q ss_pred ---cccccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 292 ---VASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 292 ---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+.+.+...-.+++++.++++..+++.+++....- ...+++++-|++.+.+..-.+..+
T Consensus 148 ~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~----~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 148 LPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGI----ELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred ChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCC----CCcHHHHHHHHHhhcCCHHHHHHH
Confidence 1222334457899999999999999988853221 234667777888877766555433
No 93
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=4.8e-05 Score=81.18 Aligned_cols=152 Identities=18% Similarity=0.133 Sum_probs=87.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
.+.+.|+|..|+|||+||+.+++....+ .. ...+++...... . + ...
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~---~~-~~~~i~~~~~~~------~----~------------------~~~- 88 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYG---GR-NARYLDAASPLL------A----F------------------DFD- 88 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC---CC-cEEEEehHHhHH------H----H------------------hhc-
Confidence 3578899999999999999998853221 11 244554333110 0 0 011
Q ss_pred CceEEEEecCcccccHHhHHhhhcccccC-CCCc-EEEEEcccccccc--------ccCCCceeecCCCCHHHHHHHHHH
Q 000803 249 GKRFLLVLDDVWNEDYSLWVDLKAPFLAA-APNS-KMIITTRNSHVAS--------TMGPIDHYNLEHLLDDDCWSIFKT 318 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~~s-~iivTtr~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~ 318 (1277)
...-+||+||+.......-..+...+... ..+. .||+|++...... .+.....+.+.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 12347889999653322222333333221 2333 4666666433221 222235789999999887777665
Q ss_pred hhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhhh
Q 000803 319 HAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLL 357 (1277)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~L 357 (1277)
.+-.. . ....++..+.+++.+.|.+..+..+...+
T Consensus 169 ~~~~~-~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAER-G---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHc-C---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 43211 1 22335677788889999998877665544
No 94
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.01 E-value=3.6e-05 Score=90.46 Aligned_cols=196 Identities=17% Similarity=0.183 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+++..... -|... .....-...+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~--------~~~~~-~~Cg~C~sCr~ 81 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCL--------NPKDG-DCCNSCSVCES 81 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCC--------CCCCC-CCCcccHHHHH
Confidence 468899999999998886532 23568899999999999999987643221 12111 01111111111
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHH---HHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-cccc
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQL---KKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RNSH 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~~~ 291 (1277)
+...... ........+++...+ ... ..+++=++|+|+++......+..+...+-.......+|++| ....
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 1111000 000011222222221 111 12334469999998776667777777665544456665555 3333
Q ss_pred cccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHHHh
Q 000803 292 VAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTLGG 355 (1277)
Q Consensus 292 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~ 355 (1277)
+... ......+++.+++.++....+...+-.... ....+.+..+++.++|.+- |+..+-.
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi----~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKI----KIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 3221 122357899999999998888876632111 1224556789999999654 4444443
No 95
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.01 E-value=4.6e-06 Score=97.91 Aligned_cols=104 Identities=27% Similarity=0.263 Sum_probs=90.6
Q ss_pred eEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccc-cCcEEEecCCcCccccchhhccccCcCeeeecCcc
Q 000803 556 RLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLL-NLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAI 634 (1277)
Q Consensus 556 r~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 634 (1277)
..|++..+.+...+..+..+..+..|++.++.+..+|...+.+. +|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCch
Confidence 45788888775555666777899999999999999999999995 999999999 5899998889999999999999998
Q ss_pred ccccCCCCCCCCCCCcccCceeeCCCC
Q 000803 635 LLKEMPFGMKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 635 ~l~~~p~~i~~L~~L~~L~~~~~~~~~ 661 (1277)
+..+|...+.+++|+.|.+.++.+..
T Consensus 175 -l~~l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 175 -LSDLPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred -hhhhhhhhhhhhhhhheeccCCcccc
Confidence 88999887789999999988887665
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=9.9e-05 Score=88.15 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+||-+.-++.|.+++.... -...+-++|..|+||||+|+.+.+..-........... ....+.-...+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~----~~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT----ATPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC----CCCCCccHHHHH
Confidence 368898888888888886542 23567899999999999999986533211100000000 001111111111
Q ss_pred HHHHhc-----CCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cc
Q 000803 222 LLESIT-----SATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SH 291 (1277)
Q Consensus 222 il~~l~-----~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~ 291 (1277)
|...-. .........+++.+.+... ..++.-++|||+++......++.++..+-......++|++|.+ ..
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 110000 0000112233333333221 1345568999999988777888888777665556666655543 33
Q ss_pred cccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 292 VAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 292 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
+... ......+.+++++.++..+.+.+.+-..+. ....+....|++.++|.+--+.
T Consensus 167 il~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi----~ie~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 167 VPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV----PAEPQALRLLARAARGSMRDAL 223 (618)
T ss_pred hhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 3322 122367999999999998888876632211 1224556778899999775443
No 97
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.7e-06 Score=91.90 Aligned_cols=133 Identities=19% Similarity=0.182 Sum_probs=69.8
Q ss_pred CCCCCcCEEeccCCCCcccccCC---CCCCCCceEEEccccCccchhhhhhhcccccCCcccccccccCCCccCchhhhh
Q 000803 1101 HKLQSLQYLKIKECPSILSFSEE---GFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMR 1177 (1277)
Q Consensus 1101 ~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~ 1177 (1277)
..||+|+.|+++.| .+..+... ...+.|+.|.+ ..|+.-..-..+....+|+|+.|++.+|..+......
T Consensus 169 eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l---~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--- 241 (505)
T KOG3207|consen 169 EQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVL---NSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--- 241 (505)
T ss_pred Hhcccchhcccccc-cccCCccccchhhhhhhheEEe---ccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch---
Confidence 45666666666653 33222221 13355666666 4455544445555666777777777776433221111
Q ss_pred ccCCcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCC--CC------CCCCccceeeccCCh
Q 000803 1178 MMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFP--EV------GLPSSLLSLEIKNCP 1241 (1277)
Q Consensus 1178 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp--~~------~~~~~L~~L~i~~c~ 1241 (1277)
...+..|++|+|++++.+..=.......|+.|+.|+++.| .+.++. .. ...++|+.|++..++
T Consensus 242 ~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 242 TKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCc
Confidence 1346667777777765433221123456677777777766 444432 21 234566666666553
No 98
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.99 E-value=3.7e-05 Score=94.08 Aligned_cols=172 Identities=19% Similarity=0.225 Sum_probs=95.4
Q ss_pred CccccchhhHH---HHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKT---KILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..+. .+.+.+.. +....+.++|++|+||||+|+.+++... . +|. .++.+. ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~~~--~--~f~---~lna~~-~~i~-- 91 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANHTR--A--HFS---SLNAVL-AGVK-- 91 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHHhc--C--cce---eehhhh-hhhH--
Confidence 35788887764 34444433 3345678999999999999999987432 2 331 111110 0000
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhh--cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEE--ccccc--c
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAV--DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIIT--TRNSH--V 292 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivT--tr~~~--v 292 (1277)
+..+......+.+ .+++.++|+||++......++.+...+ ..|+.++|+ |.+.. +
T Consensus 92 ----------------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~l---E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 92 ----------------DLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWV---ENGTITLIGATTENPYFEV 152 (725)
T ss_pred ----------------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHh---cCceEEEEEecCCChHhhh
Confidence 1111111221111 246789999999876555566555433 235555553 33321 1
Q ss_pred ccc-cCCCceeecCCCCHHHHHHHHHHhhcCCC---CCCchhhHHHHHHHHHhhcCCchH
Q 000803 293 AST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGR---DHNALEISESFRKKVVGKCGGLPL 348 (1277)
Q Consensus 293 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~~~~~~~~~~~~i~~~c~glPL 348 (1277)
... ......+.+++++.++...++.+.+-... ........++..+.|++.+.|..-
T Consensus 153 ~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 153 NKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 111 11235689999999999999887653100 011112335566778888888643
No 99
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.0001 Score=85.41 Aligned_cols=183 Identities=19% Similarity=0.168 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..+||.+..++.+.+.+..+. -...+-++|+.|+||||+|+.++...-... .+.+.-+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 468999988888887775532 234788999999999999998875221110 0011122
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEE
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
+.++.+....+.+ .+++++..... -..+++=++|+|++........+.+...+-...+..++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 3333332222222 11222111100 023456689999997766666777777776655667766
Q ss_pred EEcc-cccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 285 ITTR-NSHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 285 vTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
++|. ...+...+ .....+.+++++.++..+.+.+.+..... ...++..+.|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi----~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI----EHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 6654 33333222 22356899999999999888877643221 223455678999999987543
No 100
>PRK05642 DNA replication initiation factor; Validated
Probab=97.98 E-value=9.4e-05 Score=78.64 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=91.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
..+.|+|..|+|||.||+.+++....+ -..++|++..+ +... ... +.+.+++
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~----~~~v~y~~~~~------~~~~--------------~~~----~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR----GEPAVYLPLAE------LLDR--------------GPE----LLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEeeHHH------HHhh--------------hHH----HHHhhhh
Confidence 578999999999999999998743211 12456776432 1110 011 2222222
Q ss_pred ceEEEEecCccccc-HHhHHh-hhccccc-CCCCcEEEEEccccc---------cccccCCCceeecCCCCHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNED-YSLWVD-LKAPFLA-AAPNSKMIITTRNSH---------VASTMGPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 250 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~~s~iivTtr~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
-. ++|+||+.... ...|.. +...+.. ...|..||+|++... +.+.+.....++++++++++-.+.+.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 67899996421 134443 3322222 234678888887532 12222334568999999999999998
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHh
Q 000803 318 THAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGG 355 (1277)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 355 (1277)
.++.... ....+++.+-|++.+.|-.-++..+-.
T Consensus 177 ~ka~~~~----~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 177 LRASRRG----LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 7764321 123357778899999887665554433
No 101
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.0001 Score=87.10 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=108.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..+||-+.-++.+.+++.... -...+-++|+.|+||||+|+.+.+..-... .+.|.-+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 368999999999999986542 234678999999999999998876432211 0111112
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH----hhcCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
+.++.+.. ...+++.+.+.. -..++.-++|+|++........+.+...+-.....
T Consensus 91 ~eidaas~---------------------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~ 149 (509)
T PRK14958 91 FEVDAASR---------------------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSH 149 (509)
T ss_pred EEEccccc---------------------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCC
Confidence 22322222 223332222221 11356668999999887777777777766655566
Q ss_pred cEEEEEccc-ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 281 SKMIITTRN-SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 281 s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
+++|++|.+ ..+...+ .....+++++++.++..+.+...+-..+. ....+....|++.++|.+--+.
T Consensus 150 ~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi----~~~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 150 VKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV----EFENAALDLLARAANGSVRDAL 218 (509)
T ss_pred eEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHH
Confidence 777666543 3332221 12256889999999877766655532111 1123445678889999875443
No 102
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=6.9e-05 Score=86.67 Aligned_cols=198 Identities=13% Similarity=0.158 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEE-eCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVC-VSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~ 220 (1277)
..++|.+.-++.+..++.... -...+.++|+.|+||||+|..+++...... .+....|.. +......-...+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~--~~~~~~~~~~~~~~c~~c~~c~ 88 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR--MIDDADYLQEVTEPCGECESCR 88 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCC--CcCcccccccCCCCCCCCHHHH
Confidence 368898888888888776532 234578999999999999999876443211 111111110 001111111111
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-ccc
Q 000803 221 ALLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RNS 290 (1277)
Q Consensus 221 ~il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~~ 290 (1277)
.+...... ........+++.+..... ..+++-++|+|++.......++.+...+....+.+.+|++| +..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~ 168 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELH 168 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChH
Confidence 11111000 000111233333322221 23456688999998776667888877776555566766655 333
Q ss_pred cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 291 HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 291 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
.+...+ .....++++++++++..+.+...+-... .....+.++.|++.++|.+--+
T Consensus 169 kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g----~~i~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 169 KIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG----ISVDADALQLIGRKAQGSMRDA 225 (397)
T ss_pred HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 333221 1124688999999998888877653211 1233567788999999977543
No 103
>PF14516 AAA_35: AAA-like domain
Probab=97.94 E-value=0.0024 Score=71.88 Aligned_cols=203 Identities=12% Similarity=0.122 Sum_probs=120.1
Q ss_pred CCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC-----c
Q 000803 139 PTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD-----F 213 (1277)
Q Consensus 139 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~-----~ 213 (1277)
++.+..|+|....+++.+.+.+.. ..+.|.|+-.+|||+|...+.+..+.. .+ .++++++..- .
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~---~~-~~v~id~~~~~~~~~~ 76 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ---GY-RCVYIDLQQLGSAIFS 76 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC---CC-EEEEEEeecCCCcccC
Confidence 345567789877777777776532 589999999999999999998755432 33 3557776542 2
Q ss_pred CHHHHHHHHHHHhcCCCC-----------CCCcHHHHHHHHHHhh---cCceEEEEecCcccccH-----HhHHhhhccc
Q 000803 214 DVLSISKALLESITSATC-----------DLKTVDEVQVQLKKAV---DGKRFLLVLDDVWNEDY-----SLWVDLKAPF 274 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~-----------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~-----~~~~~l~~~l 274 (1277)
+..+.++.+...+...-. ...........+.+.+ .+++.+|+||+|+..-. .++-.+.+.+
T Consensus 77 ~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~ 156 (331)
T PF14516_consen 77 DLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSW 156 (331)
T ss_pred CHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHH
Confidence 455556555555443211 0112223333444432 26899999999964211 1222222222
Q ss_pred ccC-C---C-CcEEEEEcccccc--ccc-----cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhh
Q 000803 275 LAA-A---P-NSKMIITTRNSHV--AST-----MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGK 342 (1277)
Q Consensus 275 ~~~-~---~-~s~iivTtr~~~v--~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~ 342 (1277)
-.. . . ..-.+|.....+. ... ......+.|++++.+|...|...+-.. ......++|...
T Consensus 157 ~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~ 228 (331)
T PF14516_consen 157 YEQRKNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDW 228 (331)
T ss_pred HHhcccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHH
Confidence 111 1 0 1111222221111 111 112246899999999999998876431 112237889999
Q ss_pred cCCchHHHHHHHhhhcCC
Q 000803 343 CGGLPLAAKTLGGLLRTT 360 (1277)
Q Consensus 343 c~glPLai~~~~~~L~~~ 360 (1277)
+||+|..+..++..+...
T Consensus 229 tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 229 TGGHPYLVQKACYLLVEE 246 (331)
T ss_pred HCCCHHHHHHHHHHHHHc
Confidence 999999999999999765
No 104
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00022 Score=84.95 Aligned_cols=182 Identities=19% Similarity=0.196 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..++|-+.-++.+.+++.... -...+.++|+.|+||||+|+.+....-... .+.|.-.
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 368899999999988886532 234668999999999999999876432211 0011112
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCC
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPN 280 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~ 280 (1277)
+++..+.. ...+++.+.+... ..+++-++|+|++........+.+...+-.....
T Consensus 91 ~ei~~~~~---------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~ 149 (527)
T PRK14969 91 IEVDAASN---------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEH 149 (527)
T ss_pred eEeecccc---------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCC
Confidence 22221111 1222222222111 2356779999999877666677777776655556
Q ss_pred cEEEEEccc-ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHH
Q 000803 281 SKMIITTRN-SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTL 353 (1277)
Q Consensus 281 s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 353 (1277)
+.+|.+|.+ +.+...+ .....+++++++.++..+.+.+.+-..+. ...++..+.|++.++|.+- |+..+
T Consensus 150 ~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi----~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 150 VKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI----PFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 666665543 3333211 11246899999999988887765532111 1224455778999999775 44443
No 105
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.87 E-value=0.00019 Score=82.51 Aligned_cols=180 Identities=16% Similarity=0.086 Sum_probs=98.3
Q ss_pred CCccccchhhHHHHHHHHhccccc-------CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAA-------DHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF 213 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~ 213 (1277)
...+.|+++.++++.+.+...-.. +-...+-+.++|++|+|||++|+++++.... .| +.+..
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~----~~-----~~v~~-- 189 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA----TF-----IRVVG-- 189 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC----CE-----Eecch--
Confidence 346889999999998876432100 0022456889999999999999999885421 33 22211
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc-----------HH---hHHhhhccccc--C
Q 000803 214 DVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED-----------YS---LWVDLKAPFLA--A 277 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~ 277 (1277)
..+..... + .....+...++..-...+.+|++|+++... .. .+..+...+.. .
T Consensus 190 --~~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 --SELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred --HHHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 11111110 0 001111122222223467899999986421 11 12222222211 2
Q ss_pred CCCcEEEEEccccccc-----cccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 278 APNSKMIITTRNSHVA-----STMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 278 ~~~s~iivTtr~~~v~-----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
..+.+||.||...+.. ........+.+...+.++..++|..++....... ... ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 3467788888754322 1112235688999999999999998875432111 111 245777777764
No 106
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00021 Score=85.77 Aligned_cols=197 Identities=17% Similarity=0.176 Sum_probs=113.3
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcc--eEEEEEeCCCcCHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFD--VKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~--~~~wv~~s~~~~~~~~~ 219 (1277)
..++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+++..-... ... ...+ +....-.-.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~--~~~~~~~~~----~~cg~c~~C 92 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEG--PDGDGGPTI----DLCGVGEHC 92 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCC--ccccCCCcc----ccCcccHHH
Confidence 468999999999999886542 234688999999999999999987442221 000 0000 000111111
Q ss_pred HHHHHHhcCC-----CCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-cc
Q 000803 220 KALLESITSA-----TCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RN 289 (1277)
Q Consensus 220 ~~il~~l~~~-----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~ 289 (1277)
+.|...-..+ .......+++.+.+... ..+++-++|+|++........+.+...+-....++.+|++| ..
T Consensus 93 ~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~ 172 (598)
T PRK09111 93 QAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEI 172 (598)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCCh
Confidence 1221111100 00112233333222211 13455678999998776666777777766555567766555 43
Q ss_pred ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 290 SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 290 ~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
..+...+ .....+.+++++.++....+.+.+-.... ....+..+.|++.++|.+.-+...
T Consensus 173 ~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi----~i~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 173 RKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV----EVEDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3333222 22357899999999999888876632211 223456678999999988655433
No 107
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.86 E-value=0.00036 Score=73.74 Aligned_cols=158 Identities=16% Similarity=0.145 Sum_probs=94.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
+.+.-+.+||++|+||||||+.+....+... ..||..|..-.-.+-.++|.++-. -...
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S------yrfvelSAt~a~t~dvR~ife~aq---------------~~~~ 218 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS------YRFVELSATNAKTNDVRDIFEQAQ---------------NEKS 218 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc------eEEEEEeccccchHHHHHHHHHHH---------------HHHh
Confidence 4567788999999999999999987543221 345665554333333333333321 0123
Q ss_pred hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEE--Eccccccc---cccCCCceeecCCCCHHHHHHHHHHhhc
Q 000803 247 VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMII--TTRNSHVA---STMGPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv--Ttr~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
+.++|.+|++|.|...+..+.+. .++...+|.-++| ||.++... ..+....++.+++|..++...++.+..-
T Consensus 219 l~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred hhcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHH
Confidence 46789999999997654433232 2344456776665 66665322 1123346799999999999998887432
Q ss_pred ---CCCC---CCch---hhHHHHHHHHHhhcCCchH
Q 000803 322 ---EGRD---HNAL---EISESFRKKVVGKCGGLPL 348 (1277)
Q Consensus 322 ---~~~~---~~~~---~~~~~~~~~i~~~c~glPL 348 (1277)
..+. .-+. .....+.+-++..|.|-.-
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1111 1111 1234556667777888654
No 108
>PLN03150 hypothetical protein; Provisional
Probab=97.86 E-value=1.8e-05 Score=97.11 Aligned_cols=96 Identities=23% Similarity=0.350 Sum_probs=82.2
Q ss_pred hhhhcCCCCeeeEEecCCCCCC-CCCcCCCCCCccceeeccCCccc-cccccccccccCcEEEecCCcCccccchhhccc
Q 000803 545 LYDLLPKFKKLRLLSLQGYYIG-ELPIPFEDLRLLRYLNLADTDIR-SLPESSCSLLNLEILILRNCSSLIKLPSKIRRL 622 (1277)
Q Consensus 545 ~~~~~~~l~~Lr~L~L~~~~i~-~lp~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 622 (1277)
++..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|.+|++|+|++|.....+|..++.+
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 3445778999999999999985 78999999999999999999998 789999999999999999987777999988764
Q ss_pred -cCcCeeeecCccccccCC
Q 000803 623 -INLCHLDIRGAILLKEMP 640 (1277)
Q Consensus 623 -~~L~~L~l~~~~~l~~~p 640 (1277)
.++..+++.+|..+...|
T Consensus 514 ~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 514 LLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cccCceEEecCCccccCCC
Confidence 577889998886444433
No 109
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.83 E-value=0.0003 Score=82.17 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=100.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.|+|..|+|||+|++++.+...... .-..+++++ ..++...+...+.... .....+++.++
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~--~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~- 205 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNF--SDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC- 205 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhC--CCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-
Confidence 4588999999999999999988432211 112344554 3455566665554211 11223333333
Q ss_pred ceEEEEecCcccccH-HhH-Hhhhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNEDY-SLW-VDLKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
+.-+||+||+..... ..| +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 334888999965321 122 223222222 12355788887643 222333344567899999999999999
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHh
Q 000803 318 THAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGG 355 (1277)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 355 (1277)
+++-...- .....+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl--~~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNI--KQEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCC--CCCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 88843211 0134467888899999999987765543
No 110
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00043 Score=83.38 Aligned_cols=193 Identities=16% Similarity=0.178 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-Ccc-eEEE-EEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSG-KFD-VKAW-VCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~-~f~-~~~w-v~~s~~~~~~~~ 218 (1277)
..++|.+..++.+.+++.... -...+-++|+.|+||||+|+.++...-..... .+. |..- .+....++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dv--- 89 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDI--- 89 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcE---
Confidence 368899999999988886542 23567799999999999999987643211100 000 0000 000000000
Q ss_pred HHHHHHHhcCCCCCCCcHHH---HHHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEE-EEccccccc
Q 000803 219 SKALLESITSATCDLKTVDE---VQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMI-ITTRNSHVA 293 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~---~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii-vTtr~~~v~ 293 (1277)
+..........++ +.+.+... ..+++-++|+|++.......+..+...+-.......+| +|++...+.
T Consensus 90 -------ieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl 162 (725)
T PRK07133 90 -------IEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIP 162 (725)
T ss_pred -------EEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhh
Confidence 0000000111222 22222211 23566689999998776677777777665544455544 454444443
Q ss_pred cc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHH
Q 000803 294 ST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTL 353 (1277)
Q Consensus 294 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 353 (1277)
.. ......+.+.+++.++..+.+...+-..+. ....+.++.|++.++|-+- |+..+
T Consensus 163 ~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI----~id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 163 LTILSRVQRFNFRRISEDEIVSRLEFILEKENI----SYEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHHHhhceeEEccCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 22 222357999999999998888775532111 1223456789999999764 44433
No 111
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.81 E-value=7.1e-05 Score=82.87 Aligned_cols=90 Identities=19% Similarity=0.179 Sum_probs=63.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC--cCHHHHHHHHHHHhcCCCCCCCcHH------HHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD--FDVLSISKALLESITSATCDLKTVD------EVQ 240 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l~~~~~~~~~~~------~~~ 240 (1277)
-..++|+|++|+|||||++.+++..... +|+..+||.+.+. .++.++++.++..+-....+..... .+.
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~n---hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRN---HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhccc---CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 3678999999999999999999975433 7999999999866 7889999988655543333322111 111
Q ss_pred HHHHHh-hcCceEEEEecCccc
Q 000803 241 VQLKKA-VDGKRFLLVLDDVWN 261 (1277)
Q Consensus 241 ~~l~~~-l~~kr~LlVlDdv~~ 261 (1277)
+..+.. -++++++|++|.+..
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhH
Confidence 222222 368999999999954
No 112
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.4e-05 Score=58.58 Aligned_cols=39 Identities=33% Similarity=0.451 Sum_probs=23.7
Q ss_pred ccceeeccCCccccccccccccccCcEEEecCCcCccccc
Q 000803 577 LLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLP 616 (1277)
Q Consensus 577 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 616 (1277)
+|++|++++|.|+.+|..+++|++|++|++++| .++.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence 566666666666666666666666666666664 455443
No 113
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.79 E-value=0.00019 Score=87.26 Aligned_cols=195 Identities=13% Similarity=0.155 Sum_probs=110.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++...... ... .....+.....+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~--~~~------~~~~c~~c~~c~~ 82 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTT--NDP------KGRPCGTCEMCRA 82 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCC--CCC------CCCCCccCHHHHH
Confidence 368999999999888886532 235678999999999999999976432111 000 0001111122222
Q ss_pred HHHHhcCC-----CCCCCcHHHHHHHH---HHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cc
Q 000803 222 LLESITSA-----TCDLKTVDEVQVQL---KKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SH 291 (1277)
Q Consensus 222 il~~l~~~-----~~~~~~~~~~~~~l---~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~ 291 (1277)
+....... .......+++.+.+ ... ..+++-++|+|++........+.+...+-.....+.+|++|.+ ..
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 22211110 00112233332221 111 1245678999999776656667776666554456666666543 23
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+...+ .....+.+..++.++....+...+..... ....+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl----~i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI----NLEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 32211 12246888999999988888776643211 123456778999999988654433
No 114
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.79 E-value=0.0011 Score=71.18 Aligned_cols=166 Identities=17% Similarity=0.226 Sum_probs=104.0
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
++.+.+|+.++..+...+..... .-+..|.|+|-+|.|||.+.+++.+.... ..+|+++-+.++....+.
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-------~~vw~n~~ecft~~~lle 74 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLNL-------ENVWLNCVECFTYAILLE 74 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcCC-------cceeeehHHhccHHHHHH
Confidence 46788999999999998876542 23466799999999999999999986533 248999999999999999
Q ss_pred HHHHHhcCCCCCCC-------cHHHHHHHHHH--hhc--CceEEEEecCcccccHHhHHhhhcc----ccc-CCCCcEEE
Q 000803 221 ALLESITSATCDLK-------TVDEVQVQLKK--AVD--GKRFLLVLDDVWNEDYSLWVDLKAP----FLA-AAPNSKMI 284 (1277)
Q Consensus 221 ~il~~l~~~~~~~~-------~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~l~~~----l~~-~~~~s~ii 284 (1277)
+|+.+......+.. +..+....+.+ ..+ ++.++||||+++.- .+.+.+.-+ +.. .....-+|
T Consensus 75 ~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~i 152 (438)
T KOG2543|consen 75 KILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVI 152 (438)
T ss_pred HHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEE
Confidence 99999852222111 11222233333 122 46899999999543 222221111 111 11223344
Q ss_pred EEcccccc---ccccCCCc--eeecCCCCHHHHHHHHHH
Q 000803 285 ITTRNSHV---ASTMGPID--HYNLEHLLDDDCWSIFKT 318 (1277)
Q Consensus 285 vTtr~~~v---~~~~~~~~--~~~l~~L~~~~~~~Lf~~ 318 (1277)
+++-...- ...+|... ++....-+.+|...++.+
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 44433211 11234433 356678889998888764
No 115
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=4.4e-06 Score=97.95 Aligned_cols=109 Identities=23% Similarity=0.203 Sum_probs=82.0
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|..+. .+..+..|+.|++++| .+..++. +..+.+|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N-~i~~~~~-~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN-LISDISG-LESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC-cchhccC-Cccchhhhcc
Confidence 56778888888888888888665788888888888888888884 4777778888888884 6666654 5668888888
Q ss_pred eecCccccccCCCC-CCCCCCCcccCceeeCCCC
Q 000803 629 DIRGAILLKEMPFG-MKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 629 ~l~~~~~l~~~p~~-i~~L~~L~~L~~~~~~~~~ 661 (1277)
++++|. +..+... +..+.+|+.+.+..+.+..
T Consensus 168 ~l~~n~-i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 168 DLSYNR-IVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCCcch-hhhhhhhhhhhccchHHHhccCCchhc
Confidence 888887 5555543 4667777777776665544
No 116
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00055 Score=79.02 Aligned_cols=179 Identities=14% Similarity=0.198 Sum_probs=103.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc----cCCcceEEEEEeCCCcCHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED----SGKFDVKAWVCVSDDFDVLS 217 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~----~~~f~~~~wv~~s~~~~~~~ 217 (1277)
..++|.+...+.+.+.+... .-.+.+.++|+.|+||||+|+.+.+...... ...|...+ +.....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~----- 85 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAA----- 85 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccc-----
Confidence 35789999999998888653 2235888999999999999999876432210 00121111 111100
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-ccccc
Q 000803 218 ISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RNSHV 292 (1277)
Q Consensus 218 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~~~v 292 (1277)
.....+++.+.+.+. ..+++-++|+|++.......+..+...+......+.+|++| ....+
T Consensus 86 --------------~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 86 --------------SNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred --------------cCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 011122222222111 12445589999997655555666665554433455555555 33333
Q ss_pred ccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHH
Q 000803 293 AST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 293 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
... ......++.+++++++....+...+...+- ....+.++.+++.++|.+-.
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~----~i~~~al~~l~~~~~gdlr~ 205 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI----KFEDDALHIIAQKADGALRD 205 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHhCCCCHHH
Confidence 222 122346899999999998888876643211 12346677888899986653
No 117
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.78 E-value=0.00088 Score=73.96 Aligned_cols=214 Identities=18% Similarity=0.135 Sum_probs=126.2
Q ss_pred CCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 140 TEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 140 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.+..++||+.|+..+.+++...-.. ...+-+-|.|-+|.|||.+...++.+..... .-..+++++...--...+++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~--~~~~~v~inc~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSS--KSPVTVYINCTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhc--ccceeEEEeeccccchHHHH
Confidence 3457899999999999998654322 3456788999999999999999998754322 21245677666555677888
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHHhhcC--ceEEEEecCcccccHHhHHhhhcccc-cCCCCcEEEEEcccc--c---
Q 000803 220 KALLESITSATCDLKTVDEVQVQLKKAVDG--KRFLLVLDDVWNEDYSLWVDLKAPFL-AAAPNSKMIITTRNS--H--- 291 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~~s~iivTtr~~--~--- 291 (1277)
..|...+...........+..+.+.+...+ +-+|+|+|.++.-....-..+...|. +.-+++|+|+.---. +
T Consensus 224 ~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTd 303 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTD 303 (529)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHH
Confidence 888877732222112224444555555543 36899999984321111111222222 223566665542110 0
Q ss_pred --ccc--c-c-CCCceeecCCCCHHHHHHHHHHhhcCCCCCC-chhhHHHHHHHHHhhcCCchHHHHHHHhhh
Q 000803 292 --VAS--T-M-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHN-ALEISESFRKKVVGKCGGLPLAAKTLGGLL 357 (1277)
Q Consensus 292 --v~~--~-~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~-~~~~~~~~~~~i~~~c~glPLai~~~~~~L 357 (1277)
... . . .....+..+|.+.++-.+++..+.-...... .+...+-.|++++...|.+--|+.+.-+.+
T Consensus 304 R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 304 RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 000 0 0 1124577889999999999998874322111 123445556666666666666666655433
No 118
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.78 E-value=0.00039 Score=82.49 Aligned_cols=197 Identities=14% Similarity=0.198 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|-+..++.|.+.+.... -...+.++|+.|+||||+|+.+.+..-... ..+ ...++.-...+.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~--~~~-------~~pCg~C~sC~~ 81 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCET--APT-------GEPCNTCEQCRK 81 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccC--CCC-------CCCCcccHHHHH
Confidence 357898888888887775532 235778899999999999999887543211 000 000111111111
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHHh-----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-c
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQLKKA-----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-S 290 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l~~~-----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~ 290 (1277)
+...... .......++++.. +++. ..+++-+||+|++.......++.+...+-.......+|++|.. .
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~-L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKR-LKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHH-HHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 1111000 0000111222221 2221 2356679999999887767777777766544445556665544 3
Q ss_pred cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch-HHHHHHHhhh
Q 000803 291 HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP-LAAKTLGGLL 357 (1277)
Q Consensus 291 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~~~L 357 (1277)
.+...+ .....+++++++.++..+.+...+..... ....+.++.|++.++|.+ .|+..+..++
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi----~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV----DYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333221 22356899999999999888876642211 123456778999999965 6777766544
No 119
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.77 E-value=0.00044 Score=85.93 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+||.+..++.|..++.... -...+.++|..|+||||+|+.+.+..-........ .+..-...+.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---------pCg~C~sC~~ 80 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---------PCGECDSCVA 80 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---------CCcccHHHHH
Confidence 368999999999988886542 23467899999999999999987754322100000 0000000111
Q ss_pred HHHH-------hcCCCCCCCcHHHHHHHHHH----hhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcc-c
Q 000803 222 LLES-------ITSATCDLKTVDEVQVQLKK----AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTR-N 289 (1277)
Q Consensus 222 il~~-------l~~~~~~~~~~~~~~~~l~~----~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr-~ 289 (1277)
|... +.........++++.+...+ -..+++-++|||++.......++.|+..+-.-...+.+|++|. .
T Consensus 81 ~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~ 160 (824)
T PRK07764 81 LAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEP 160 (824)
T ss_pred HHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1100 00000011123333221111 1235566889999988887888888887776656666665554 3
Q ss_pred ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 290 SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 290 ~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
..+...+ .....|+++.++.++..+.+.+.+-.... ....+....|++.++|.+..+
T Consensus 161 ~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv----~id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 161 DKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV----PVEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 3343322 22357899999999988888765522111 122345567899999988433
No 120
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.76 E-value=1.3e-06 Score=91.79 Aligned_cols=203 Identities=20% Similarity=0.191 Sum_probs=96.2
Q ss_pred hcCCCCeeeEEecCCCCCCC-----CCcCCCCCCccceeeccCC----ccccccccccccccCcEEEecCCcCccccchh
Q 000803 548 LLPKFKKLRLLSLQGYYIGE-----LPIPFEDLRLLRYLNLADT----DIRSLPESSCSLLNLEILILRNCSSLIKLPSK 618 (1277)
Q Consensus 548 ~~~~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~----~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 618 (1277)
..-.+..+..++|++|.++. +-+.+.+.++||.-++++- ...++|+.+. .+...
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~-----------------~l~~a 87 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALK-----------------MLSKA 87 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHH-----------------HHHHH
Confidence 34556788888888887642 3345566667777777753 1224444321 11112
Q ss_pred hccccCcCeeeecCccccccCCCC----CCCCCCCcccCceeeCCCCCCCCChhc-cccccccCceeeecCccCCCChhh
Q 000803 619 IRRLINLCHLDIRGAILLKEMPFG----MKELKNLQTLSNFVVGKGGETASGLED-LKILKFLSGELCISGLQNVNDSKN 693 (1277)
Q Consensus 619 i~~L~~L~~L~l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~~~~~~~~~~~~-L~~L~~L~~~l~i~~l~~~~~~~~ 693 (1277)
+...++|+.|+||+|-.-..-+++ |...+.|++|.+.+++.....+..++. |..|.+.
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~----------------- 150 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVN----------------- 150 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHH-----------------
Confidence 223334555555544321111111 334555555555555544321221111 1111110
Q ss_pred hhhhccccCCCCCceEEEecCCCCCCcchHHHHHhhhcCCCccCccEEEEeeeCCCCCCccc-----CCCCCCCccEEEE
Q 000803 694 AREAALCEKLNLEALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWI-----GDPLFSKMNVLEL 768 (1277)
Q Consensus 694 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~-----~~~~l~~L~~L~L 768 (1277)
.......+|+.+...-+.... ......-..++.++.|+.+.+..+... |..+ .-..+++|+.|+|
T Consensus 151 ---kk~~~~~~Lrv~i~~rNrlen-----~ga~~~A~~~~~~~~leevr~~qN~I~--~eG~~al~eal~~~~~LevLdl 220 (382)
T KOG1909|consen 151 ---KKAASKPKLRVFICGRNRLEN-----GGATALAEAFQSHPTLEEVRLSQNGIR--PEGVTALAEALEHCPHLEVLDL 220 (382)
T ss_pred ---hccCCCcceEEEEeecccccc-----ccHHHHHHHHHhccccceEEEeccccc--CchhHHHHHHHHhCCcceeeec
Confidence 112233455555444332111 111223344555667777777665432 1111 0123677888888
Q ss_pred cCCCCCCC----CC-CCCCCCCCceeeeccC
Q 000803 769 DDCWNCTS----LP-SLGLLSSLRDLTIKRM 794 (1277)
Q Consensus 769 ~~~~~~~~----l~-~l~~l~~L~~L~l~~~ 794 (1277)
.+|..-.. +. .+..+|+|+.|.+.+|
T Consensus 221 ~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 221 RDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 87754221 11 4556777888888776
No 121
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00045 Score=82.96 Aligned_cols=201 Identities=15% Similarity=0.175 Sum_probs=110.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEE-eCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVC-VSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~-~s~~~~~~~~~~ 220 (1277)
..++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+.+..-... ..+...|.. +......-...+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~--~~~~~~~~~~~~~~Cg~C~sC~ 88 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQR--MIDDPVYLQEVTEPCGECESCR 88 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCC--cCCccccccccCCCCccCHHHH
Confidence 468899988888888776532 234588999999999999988876443211 111001110 001111111111
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-ccc
Q 000803 221 ALLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RNS 290 (1277)
Q Consensus 221 ~il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~~ 290 (1277)
.+...-.. ........+++...+... ..+++-++|+|+++......++.+...+-.-...+.+|++| +..
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~ 168 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELH 168 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence 11110000 000112234444333222 23455678999998776666777777765544556655544 433
Q ss_pred ccccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHH
Q 000803 291 HVAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTL 353 (1277)
Q Consensus 291 ~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 353 (1277)
.+... ......+++.+++.++....+.+.+-... .....+.++.|++.++|..- |+..+
T Consensus 169 kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg----i~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 169 KIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG----IQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 33322 12336799999999998887776553211 11235567789999999554 44433
No 122
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.76 E-value=0.00057 Score=72.74 Aligned_cols=196 Identities=13% Similarity=0.118 Sum_probs=116.2
Q ss_pred hHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCC--cceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 150 DKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGK--FDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~--f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
-++.+.+.+..... ...+-+.|||.+|.|||++++++........... --.++.|.+...++...+...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 34445454544322 4567799999999999999999986443322111 114677888889999999999999999
Q ss_pred CCCCCCCcHHHHHHHHHHhhcC-ceEEEEecCcccc------cHHhHHhhhcccccCCCCcEEEEEccccccccc-----
Q 000803 228 SATCDLKTVDEVQVQLKKAVDG-KRFLLVLDDVWNE------DYSLWVDLKAPFLAAAPNSKMIITTRNSHVAST----- 295 (1277)
Q Consensus 228 ~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~------~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~----- 295 (1277)
.+.............+.+.++. +-=+||+|.+.+. .+...-.....+.+.-.=+-|.|-|++.--+-.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8876666666666665566644 3448889999552 111122222233233334456666654321111
Q ss_pred cCCCceeecCCCCHHHH-HHHHHHhh--cCCCCCCchhhHHHHHHHHHhhcCCchHH
Q 000803 296 MGPIDHYNLEHLLDDDC-WSIFKTHA--FEGRDHNALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 296 ~~~~~~~~l~~L~~~~~-~~Lf~~~~--~~~~~~~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
.....++.+.....++- ..|+.... ..-+.++. -...++++.|...++|+.=-
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~-l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPSN-LASPELARRIHERSEGLIGE 257 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCC-CCCHHHHHHHHHHcCCchHH
Confidence 11234566776655543 44433221 11122222 23467899999999998643
No 123
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=3e-05 Score=56.82 Aligned_cols=39 Identities=31% Similarity=0.445 Sum_probs=25.4
Q ss_pred eeeEEecCCCCCCCCCcCCCCCCccceeeccCCcccccc
Q 000803 554 KLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLP 592 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp 592 (1277)
+|++|++++|.|+.+|..+++|++|++|++++|.|+.+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566777777777777666677777777777777666554
No 124
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.0011 Score=68.41 Aligned_cols=192 Identities=18% Similarity=0.184 Sum_probs=98.1
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..|||.++-++++.=.+...... +..+-.+-++|++|.||||||.-+++...+. +-++......-..-+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r-~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--------~k~tsGp~leK~gDlaa 96 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR-GEALDHVLLFGPPGLGKTTLAHIIANELGVN--------LKITSGPALEKPGDLAA 96 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc-CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--------eEecccccccChhhHHH
Confidence 46999998888876555443322 2567789999999999999999998854332 11221111111111222
Q ss_pred HHHHhcCCCCC-CCcHHHH----HHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccccccc
Q 000803 222 LLESITSATCD-LKTVDEV----QVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVASTM 296 (1277)
Q Consensus 222 il~~l~~~~~~-~~~~~~~----~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~~ 296 (1277)
++..+...+.- .+....+ .+.+.-.+.+-+.=|++.--... ..+.-.++ +-+-|=.|||.-.+..-+
T Consensus 97 iLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLp---pFTLIGATTr~G~lt~PL 168 (332)
T COG2255 97 ILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLP---PFTLIGATTRAGMLTNPL 168 (332)
T ss_pred HHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCC---CeeEeeeccccccccchh
Confidence 22222211100 0011111 11111122222222222211000 00111111 123344688876554433
Q ss_pred CC--CceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 297 GP--IDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 297 ~~--~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
.. .-+.+++..+.+|-.+...+.+.--. .+..++-+.+|++...|-|--..-+-
T Consensus 169 rdRFGi~~rlefY~~~eL~~Iv~r~a~~l~----i~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 169 RDRFGIIQRLEFYTVEELEEIVKRSAKILG----IEIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred HHhcCCeeeeecCCHHHHHHHHHHHHHHhC----CCCChHHHHHHHHhccCCcHHHHHHH
Confidence 21 13567888899999888887773211 12335677899999999996554333
No 125
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00066 Score=80.99 Aligned_cols=198 Identities=16% Similarity=0.127 Sum_probs=112.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+++..-... ..+ + ...+.-...+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~--~~~---~----~pCg~C~~C~~ 78 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQ--GPT---A----TPCGVCESCVA 78 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcccc--CCC---C----CcccccHHHHH
Confidence 368999999999999886532 234678999999999999999886432211 000 0 00000011111
Q ss_pred HHHH-------hcCCCCCCCcHHHH---HHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-cc
Q 000803 222 LLES-------ITSATCDLKTVDEV---QVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RN 289 (1277)
Q Consensus 222 il~~-------l~~~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~ 289 (1277)
+... +..+.......+++ .+.+... ..+++-++|+|++........+.++..+-.......+|++| ..
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1100 00000001122222 2222111 13456688999998877777888877776655566666555 43
Q ss_pred cccccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHHHhhh
Q 000803 290 SHVAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTLGGLL 357 (1277)
Q Consensus 290 ~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~~~~L 357 (1277)
..+... ......+.+++++.++..+.+.+.+-.... ....+....|++.++|-+- |+..+-.++
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi----~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV----VVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 333322 122367999999999988888776532211 1224456778999999774 555544433
No 126
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.65 E-value=0.0012 Score=77.38 Aligned_cols=181 Identities=14% Similarity=0.160 Sum_probs=111.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc------------------CCcce
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS------------------GKFDV 203 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~------------------~~f~~ 203 (1277)
..++|-+...+.+...+... .-..+..++|+.|+||||+|+.+++..-.... .+++
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 36899988888888888543 22356789999999999999987664321110 0111
Q ss_pred EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCC
Q 000803 204 KAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAP 279 (1277)
Q Consensus 204 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 279 (1277)
++.+..+. ....+++.+.+... ..+++-++|+|++........+.++..+-....
T Consensus 88 v~eldaas---------------------~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 88 IIEMDAAS---------------------NRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPS 146 (535)
T ss_pred EEEecccc---------------------ccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCC
Confidence 11111111 11233333333221 124566889999988777777777777765556
Q ss_pred CcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 280 NSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 280 ~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
.+++|++|.+. .+.... .....+++.+++.++..+.+...+-..+. ...++.++.|++.++|.+--+..+
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi----~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV----SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 67777766553 222111 22357899999999998888766532211 223456778999999988554443
No 127
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.64 E-value=0.0014 Score=77.19 Aligned_cols=185 Identities=16% Similarity=0.148 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceE
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVK 204 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~ 204 (1277)
..++|.+.-...+.+++.... -...+.++|+.|+||||+|+.++...-... .+.|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 358899999999988886542 234667899999999999998876432110 0011112
Q ss_pred EEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEE
Q 000803 205 AWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKM 283 (1277)
Q Consensus 205 ~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 283 (1277)
+++..+...... +...+.+.+... ..+++-++|+|+++.......+.+...+........+
T Consensus 91 ~eidaas~~gvd------------------~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 91 IEIDAASNRGID------------------DIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEEeCccCCCHH------------------HHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 222211111110 111222222111 2356679999999776555666666666554445555
Q ss_pred EEEc-cccccccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 284 IITT-RNSHVAST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 284 ivTt-r~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
|++| +...+... ......+.+.+++.++....+...+-.... ....+.+..|++.++|.+-.+...
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi----~id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI----EYEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5544 43333221 122246899999999988888776632211 122455677888999976544433
No 128
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.64 E-value=0.00052 Score=77.67 Aligned_cols=148 Identities=17% Similarity=0.169 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+...+.+..++... .-..++.++|++|+||||+|+.+++... . . ...++.+. ... ...+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~~--~--~---~~~i~~~~-~~~-~~i~~ 86 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEVG--A--E---VLFVNGSD-CRI-DFVRN 86 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHhC--c--c---ceEeccCc-ccH-HHHHH
Confidence 46899999999999888643 2346788899999999999999987431 1 1 23344333 111 11111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccc-cHHhHHhhhcccccCCCCcEEEEEccccccc-ccc-CC
Q 000803 222 LLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLAAAPNSKMIITTRNSHVA-STM-GP 298 (1277)
Q Consensus 222 il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~-~~~-~~ 298 (1277)
.+..+.. .. .+.+.+-++|+||+... .......+...+.....++++|+||...... ..+ ..
T Consensus 87 ~l~~~~~-------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 87 RLTRFAS-------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred HHHHHHH-------------hh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 1111100 00 01134557889999754 2222233333333345677888888653211 111 11
Q ss_pred CceeecCCCCHHHHHHHHHH
Q 000803 299 IDHYNLEHLLDDDCWSIFKT 318 (1277)
Q Consensus 299 ~~~~~l~~L~~~~~~~Lf~~ 318 (1277)
...+.++..+.++..+++..
T Consensus 152 ~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHH
Confidence 23566767777777665543
No 129
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.62 E-value=0.0011 Score=80.34 Aligned_cols=195 Identities=14% Similarity=0.167 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+..+..+..++.... -...+.++|+.|+||||+|+.+++..-... ... . .......-...+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~--~~~-~----~~~~Cg~C~~C~~ 83 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN--SDK-P----TPEPCGKCELCRA 83 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC--cCC-C----CCCCCcccHHHHH
Confidence 358899999999888886542 224678999999999999999987542211 000 0 0011111122222
Q ss_pred HHHHhcC-----CCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cc
Q 000803 222 LLESITS-----ATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SH 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~ 291 (1277)
+...... ........+++.+.+... ..+++-++|+|++.......++.+...+-.......+|++|.+ ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 2211110 000112233333333221 1345668899999877767777777766654445555555443 33
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
+...+ .....+.+..++.++....+.+.+-.... ....+.+..|++.++|.+..+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi----~is~~al~~La~~s~G~lr~A~~ 221 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI----EIEPEALTLVAQRSQGGLRDAES 221 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 32221 22356788899999888777765532111 11234567899999998765443
No 130
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.62 E-value=0.001 Score=77.76 Aligned_cols=181 Identities=13% Similarity=0.166 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-------------------cCCcc
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-------------------SGKFD 202 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-------------------~~~f~ 202 (1277)
..++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+.+..-... +.+++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 368899999998888886532 235678999999999999998876432110 00111
Q ss_pred eEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHH---HHHHH-hhcCceEEEEecCcccccHHhHHhhhcccccCC
Q 000803 203 VKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQ---VQLKK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAA 278 (1277)
Q Consensus 203 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 278 (1277)
.+++..... ...+++. +.+.. -..+++-++|+|++........+.+...+-...
T Consensus 92 -~~~i~g~~~---------------------~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~ 149 (451)
T PRK06305 92 -VLEIDGASH---------------------RGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPP 149 (451)
T ss_pred -eEEeecccc---------------------CCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCC
Confidence 111111111 1112221 11111 113566788999997665555666666665544
Q ss_pred CCcEEEEEccc-ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH-HHHHH
Q 000803 279 PNSKMIITTRN-SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL-AAKTL 353 (1277)
Q Consensus 279 ~~s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL-ai~~~ 353 (1277)
.+..+|++|.. ..+...+ .....+++.++++++....+...+-... .....+.++.|++.++|.+- |+..+
T Consensus 150 ~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg----~~i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 150 QHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG----IETSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 56666666533 3332221 2235689999999998888877653211 11234567789999999664 44444
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.61 E-value=0.0021 Score=75.12 Aligned_cols=161 Identities=15% Similarity=0.142 Sum_probs=92.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
...+.|+|..|+|||+||+++++....+. .-..+++++. .+...++...+... ..+... +.++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~--~~~~v~yi~~------~~~~~~~~~~~~~~-----~~~~~~----~~~~ 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENN--PNAKVVYVSS------EKFTNDFVNALRNN-----KMEEFK----EKYR 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhC--CCCcEEEEEH------HHHHHHHHHHHHcC-----CHHHHH----HHHH
Confidence 34688999999999999999998543221 1123556653 23344444444321 222222 2232
Q ss_pred CceEEEEecCcccccHH-hH-Hhhhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHH
Q 000803 249 GKRFLLVLDDVWNEDYS-LW-VDLKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIF 316 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 316 (1277)
+ .-+||+||++..... .+ ..+...+.. ...+..+|+|+... .+...+.....+.+++.+.++-.+++
T Consensus 199 ~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il 277 (405)
T TIGR00362 199 S-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAIL 277 (405)
T ss_pred h-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHH
Confidence 2 238889999642211 11 122222211 12355688877642 12233333346899999999999999
Q ss_pred HHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 317 KTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
.+.+-... ....+++...|++.+.|..-.+.
T Consensus 278 ~~~~~~~~----~~l~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 278 QKKAEEEG----LELPDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHH
Confidence 98874321 12335677788888888765433
No 132
>PRK06620 hypothetical protein; Validated
Probab=97.61 E-value=0.00088 Score=69.85 Aligned_cols=136 Identities=14% Similarity=0.039 Sum_probs=79.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+.+.|+|++|+|||+|++.+++... ..++. ..+.. + +.. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~---------~~~~~--~~~~~---------------------~-------~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN---------AYIIK--DIFFN---------------------E-------EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC---------CEEcc--hhhhc---------------------h-------hHH-h
Confidence 5689999999999999999876431 11111 00000 0 011 1
Q ss_pred ceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccc-------ccccCCCceeecCCCCHHHHHHHHHHhhcC
Q 000803 250 KRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHV-------ASTMGPIDHYNLEHLLDDDCWSIFKTHAFE 322 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 322 (1277)
..-++++||+..........+...+. ..|..||+|++.... .+.+...-.++++++++++-.+++.+.+..
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 23478899996322111112211122 346789999875432 222333457999999999988888777642
Q ss_pred CCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 323 GRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 323 ~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
. . ....+++.+-|++.+.|---.+.
T Consensus 163 ~-~---l~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 S-S---VTISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred c-C---CCCCHHHHHHHHHHccCCHHHHH
Confidence 1 1 12335677778888887654443
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.60 E-value=0.00093 Score=72.77 Aligned_cols=159 Identities=15% Similarity=0.101 Sum_probs=80.4
Q ss_pred ccccchhhHHHHHHHHhc---c------cccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc
Q 000803 143 VVFGREEDKTKILEMVLT---D------TAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF 213 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~---~------~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~ 213 (1277)
.++|.++.++++.+.... . .....+...-+.++|++|+||||+|+.+++...... .-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~--~~~~~~~v~~~~~- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMN--VLSKGHLIEVERA- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcC--cccCCceEEecHH-
Confidence 478888777666543211 1 011113456788999999999999999976421110 1111122332221
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc--------HHhHHhhhcccccCCCCcEEEE
Q 000803 214 DVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED--------YSLWVDLKAPFLAAAPNSKMII 285 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~iiv 285 (1277)
++ .....+ .........+.+. ..-+|++|++..-. .+..+.+...+........+|+
T Consensus 84 ---~l----~~~~~g-----~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vil 148 (261)
T TIGR02881 84 ---DL----VGEYIG-----HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLIL 148 (261)
T ss_pred ---Hh----hhhhcc-----chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEe
Confidence 11 111100 1112222223222 13488999996421 1223334443333333345556
Q ss_pred Ecccccc----------ccccCCCceeecCCCCHHHHHHHHHHhhc
Q 000803 286 TTRNSHV----------ASTMGPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 286 Ttr~~~v----------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
++...+. ...+ ...+.+++++.++-.+++.+.+.
T Consensus 149 a~~~~~~~~~~~~~p~L~sRf--~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 149 AGYSDEMDYFLSLNPGLRSRF--PISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred cCCcchhHHHHhcChHHHhcc--ceEEEECCCCHHHHHHHHHHHHH
Confidence 6544322 1111 24578899999999999987764
No 134
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.60 E-value=0.00038 Score=87.31 Aligned_cols=159 Identities=15% Similarity=0.170 Sum_probs=84.4
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc--CCcceEEEEEeCCCcCHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS--GKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+++....... ...+..+|.. +...+.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l~ 250 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSLL 250 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHHh
Confidence 3589999999999988865422 23579999999999999999875321110 0112334421 111111
Q ss_pred HHHHHHhcCCCCCCCcHHH-HHHHHHHhhcCceEEEEecCccccc--------HHhHHhhhcccccCCCCcEEEEEcccc
Q 000803 220 KALLESITSATCDLKTVDE-VQVQLKKAVDGKRFLLVLDDVWNED--------YSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~~-~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
. +... ..+.++ +...+.+.-+.++.+|++|++..-. ..+-..+..+....+ .-++|-+|...
T Consensus 251 ----a---~~~~-~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g-~i~~IgaTt~~ 321 (731)
T TIGR02639 251 ----A---GTKY-RGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSG-KLRCIGSTTYE 321 (731)
T ss_pred ----h---hccc-cchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCC-CeEEEEecCHH
Confidence 0 0000 012222 2222222223468899999995321 011112222222221 23455555432
Q ss_pred ccccc-------cCCCceeecCCCCHHHHHHHHHHhh
Q 000803 291 HVAST-------MGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 291 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
+.... ......+.+++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 22111 1223578999999999999998654
No 135
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.60 E-value=0.0013 Score=76.83 Aligned_cols=160 Identities=17% Similarity=0.115 Sum_probs=92.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcc-eEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFD-VKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
..-+.|+|..|+|||+||+++++..... +.. .++|++. .++..++...+... ..++ +++.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~---~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN---EPDLRVMYITS------EKFLNDLVDSMKEG-----KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh---CCCCeEEEEEH------HHHHHHHHHHHhcc-----cHHH----HHHHH
Confidence 3458999999999999999999864322 222 4566654 34455555554321 1222 23333
Q ss_pred cCceEEEEecCccccc-HHhH-Hhhhccccc-CCCCcEEEEEccc-c--------ccccccCCCceeecCCCCHHHHHHH
Q 000803 248 DGKRFLLVLDDVWNED-YSLW-VDLKAPFLA-AAPNSKMIITTRN-S--------HVASTMGPIDHYNLEHLLDDDCWSI 315 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~~s~iivTtr~-~--------~v~~~~~~~~~~~l~~L~~~~~~~L 315 (1277)
..+.-+||+||++... ...+ ..+...+.. ...|..||+||.. + .+.+.+...-.+.+++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345589999996421 0111 122222211 1234578888752 2 1223333345788999999999999
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 316 FKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
+.+.+-... ....+++...|++.+.|.--.+
T Consensus 272 L~~~~~~~~----~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIEH----GELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhcC----CCCCHHHHHHHHhccccCHHHH
Confidence 988874221 1233567778888888765443
No 136
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0017 Score=78.74 Aligned_cols=178 Identities=15% Similarity=0.190 Sum_probs=109.1
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc-------------------ccCCcc
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE-------------------DSGKFD 202 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~-------------------~~~~f~ 202 (1277)
..++|.+...+.+.+++.... -...+.++|+.|+||||+|+.+....-.. ...+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 368899999999999886532 23568899999999999998876643211 011232
Q ss_pred eEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCC
Q 000803 203 VKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAA 278 (1277)
Q Consensus 203 ~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 278 (1277)
. ..+..+.. ...+++...+.+. ..+++=++|+|++.......++.+...+-.-.
T Consensus 92 ~-~~ld~~~~---------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp 149 (614)
T PRK14971 92 I-HELDAASN---------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPP 149 (614)
T ss_pred e-EEeccccc---------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCC
Confidence 2 12222111 1122332222211 12445588999998877777888877776555
Q ss_pred CCcEEEEEc-ccccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 279 PNSKMIITT-RNSHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 279 ~~s~iivTt-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
.++.+|++| +...+...+ .....+++.+++.++....+.+.+-..+- ....+.+..|++.++|-.--+
T Consensus 150 ~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi----~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 150 SYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI----TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHH
Confidence 566665544 444443322 22357899999999998888776532211 122455678999999966533
No 137
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.55 E-value=0.00051 Score=86.68 Aligned_cols=185 Identities=14% Similarity=0.149 Sum_probs=96.5
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEE-EEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAW-VCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~w-v~~s~~~~~~~~ 218 (1277)
..++||+.++.++++.|..... .-+.++|.+|+||||+|+.+++...... ..-.+..+| +..+.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 4689999999999998866432 2456999999999999999887432111 001122333 22211
Q ss_pred HHHHHHHhcCCCCCCCcH-HHHHHHHHHhh-cCceEEEEecCccccc-------HHhHHhhhcccccCCCCcEEEEEccc
Q 000803 219 SKALLESITSATCDLKTV-DEVQVQLKKAV-DGKRFLLVLDDVWNED-------YSLWVDLKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~-~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtr~ 289 (1277)
+........+. +.+...+.+.- .+++.+|++|++.... ..+-..+..+.... ..-++|-||..
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 00000001111 12222222222 2468999999985421 11111123332222 23456666665
Q ss_pred cccccc-------cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 290 SHVAST-------MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 290 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
.+.... ......+.+++++.+++.+++....-.-..........+....+++.+.++.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 433211 1233579999999999999975443211111111223444556666666543
No 138
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.51 E-value=0.003 Score=69.99 Aligned_cols=196 Identities=13% Similarity=0.107 Sum_probs=112.0
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc------------ccCCcceEEEEEeC
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE------------DSGKFDVKAWVCVS 210 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~------------~~~~f~~~~wv~~s 210 (1277)
.++|.+..++.+.+.+.... -....-++|+.|+||+++|..+.+..-.. ...|- -..|+.-.
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP-Dl~~i~p~ 78 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP-DLLWVEPT 78 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC-CEEEEecc
Confidence 57899999999998886642 23689999999999999997776532111 11122 23343211
Q ss_pred CCcCHHHHHHHHHHHhc--CCCCCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEE
Q 000803 211 DDFDVLSISKALLESIT--SATCDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKM 283 (1277)
Q Consensus 211 ~~~~~~~~~~~il~~l~--~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~i 283 (1277)
...+...+...-++..+ ........++++. .+.+.+ .+++-++|+|++...+....+.++..+-.-. .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir-~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQIR-EIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHHH-HHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000001011111111 1111122334432 333333 3567789999998887777777777765444 4455
Q ss_pred EEEcc-cccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 284 IITTR-NSHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 284 ivTtr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
|++|. ...+...+ .....+.+.++++++..+.+....... . .......++..++|.|..+..+
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~---~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE---I----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc---c----chhHHHHHHHHcCCCHHHHHHH
Confidence 55544 33333322 233679999999999999988764211 0 0111357889999999765543
No 139
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.51 E-value=0.00038 Score=88.45 Aligned_cols=157 Identities=15% Similarity=0.157 Sum_probs=85.1
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC--CcceEEEEEeCCCcCHHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSG--KFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~--~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
.++||+++++++++.|..... .-+.++|++|+|||++|..++......... .-+..+|.- +...+
T Consensus 180 ~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l-- 246 (821)
T CHL00095 180 PVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLL-- 246 (821)
T ss_pred CCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHH--
Confidence 589999999999999976432 235699999999999999887754211100 012344421 11111
Q ss_pred HHHHHhcCCCCCCCcHH-HHHHHHHHhhcCceEEEEecCccccc-------HHhHHhhhcccccCCCCcEEEEEcccccc
Q 000803 221 ALLESITSATCDLKTVD-EVQVQLKKAVDGKRFLLVLDDVWNED-------YSLWVDLKAPFLAAAPNSKMIITTRNSHV 292 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~-~~~~~l~~~l~~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtr~~~v 292 (1277)
+.+.... .+.+ .+...+.+.-..++.+|++|++..-- ..+-..+..+....+ .-++|.+|...+.
T Consensus 247 -----~ag~~~~-ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~ey 319 (821)
T CHL00095 247 -----LAGTKYR-GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDEY 319 (821)
T ss_pred -----hccCCCc-cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHHH
Confidence 1111111 1222 22333333334568999999994210 001122222222222 2455656555443
Q ss_pred cc-------ccCCCceeecCCCCHHHHHHHHHHh
Q 000803 293 AS-------TMGPIDHYNLEHLLDDDCWSIFKTH 319 (1277)
Q Consensus 293 ~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~ 319 (1277)
.. ......++.+...+.++...++...
T Consensus 320 ~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 320 RKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 21 1123356888889999988887643
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.49 E-value=0.0025 Score=69.73 Aligned_cols=161 Identities=18% Similarity=0.139 Sum_probs=82.8
Q ss_pred ccccchhhHHHHHHHH---hccc-----c-cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc
Q 000803 143 VVFGREEDKTKILEMV---LTDT-----A-ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF 213 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L---~~~~-----~-~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~ 213 (1277)
.++|-++.++++.++. .... . ........+.++|++|+||||+|+.+++...... .-...-|+.++..
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g--~~~~~~~~~v~~~- 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLG--YIKKGHLLTVTRD- 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcC--CCCCCceEEecHH-
Confidence 5778776666554432 1110 0 0011234578999999999999999976421111 1111124444421
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccc---------cHHhHHhhhcccccCCCCcEEE
Q 000803 214 DVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNE---------DYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
. +.....+.. .......+.+. ..-+|++|++..- ..+.-..+...+.....+.+||
T Consensus 101 ---~----l~~~~~g~~-----~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI 165 (287)
T CHL00181 101 ---D----LVGQYIGHT-----APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVI 165 (287)
T ss_pred ---H----HHHHHhccc-----hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 222221111 11222233332 2348999999541 1122233333343444556777
Q ss_pred EEcccccccccc--------CCCceeecCCCCHHHHHHHHHHhhc
Q 000803 285 ITTRNSHVASTM--------GPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 285 vTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
+++....+.... .....+.+++++.+|..+++...+-
T Consensus 166 ~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 166 FAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLE 210 (287)
T ss_pred EeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHH
Confidence 777543321111 1224688999999999999887763
No 141
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.49 E-value=0.00033 Score=79.17 Aligned_cols=110 Identities=16% Similarity=0.183 Sum_probs=73.0
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+++.++..+.+...|... +.+.++|++|+|||++|+++++...... .|+.+.||++++.++..+....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~--~~~~v~~VtFHpsySYeDFI~G 244 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEK--APQRVNMVQFHQSYSYEDFIQG 244 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCc--ccceeeEEeecccccHHHHhcc
Confidence 35788899999999988643 3578899999999999999988654333 6788899999988876655432
Q ss_pred HHHHhcCCCCCCC-cHHHHHHHHHHhhc--CceEEEEecCcccccHH
Q 000803 222 LLESITSATCDLK-TVDEVQVQLKKAVD--GKRFLLVLDDVWNEDYS 265 (1277)
Q Consensus 222 il~~l~~~~~~~~-~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~ 265 (1277)
+ ......-. ......+.+++..+ ++++++|+|++...+..
T Consensus 245 ~----rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 245 Y----RPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred c----CCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 2 11110000 00112223333322 46899999999776544
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.48 E-value=0.0025 Score=76.31 Aligned_cols=192 Identities=16% Similarity=0.146 Sum_probs=110.3
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-CcceEEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSG-KFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~-~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
..++|-+..++.+..++.... -...+.++|+.|+||||+|+.+++..-..... .+.| ..-...+
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC----------~~C~~C~ 80 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPC----------GECSSCK 80 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCC----------ccchHHH
Confidence 368899999999988886542 23578899999999999999998743221100 0000 0000001
Q ss_pred HHHHHhcC-----CCCCCCcHHHHHHHH---HH-hhcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-c
Q 000803 221 ALLESITS-----ATCDLKTVDEVQVQL---KK-AVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-S 290 (1277)
Q Consensus 221 ~il~~l~~-----~~~~~~~~~~~~~~l---~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~ 290 (1277)
++...-.. ........+++.... .. -..+++-++|+|++.......++.+...+-.......+|.+|.. .
T Consensus 81 ~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 81 SIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred HHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 11110000 000012233332222 11 12356668999999887767777887776655556666666543 3
Q ss_pred cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 291 HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 291 ~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
.+...+ .....++.++++.++..+.+...+..... ...++.+..|++.++|.+-.+..
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi----~id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI----KYEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHH
Confidence 332211 22346889999999988888776643211 22345667799999998754433
No 143
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.48 E-value=0.0014 Score=75.52 Aligned_cols=157 Identities=17% Similarity=0.141 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
..+.|+++.++++.+.+...-. .+-...+-|.++|++|+|||++|+++++.... .| +.++.
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~----~~-----i~v~~--- 198 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA----TF-----IRVVG--- 198 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC----CE-----EEeeh---
Confidence 4688999999998887632110 00123456889999999999999999874321 22 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH-hhcCceEEEEecCcccc-----------cHHhHHhhhccc---cc--C
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKK-AVDGKRFLLVLDDVWNE-----------DYSLWVDLKAPF---LA--A 277 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~l---~~--~ 277 (1277)
..+. ....+ ......+.+.+ .-...+.+|+|||++.- +...+..+...+ .. .
T Consensus 199 -~~l~----~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~ 267 (389)
T PRK03992 199 -SELV----QKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP 267 (389)
T ss_pred -HHHh----Hhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC
Confidence 1111 11100 01112222222 22346789999999642 111111122211 11 1
Q ss_pred CCCcEEEEEccccccccc-c----CCCceeecCCCCHHHHHHHHHHhhc
Q 000803 278 APNSKMIITTRNSHVAST-M----GPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 278 ~~~s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
..+.+||.||...+.... + .-...+.+++.+.++..++|+.++.
T Consensus 268 ~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~ 316 (389)
T PRK03992 268 RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTR 316 (389)
T ss_pred CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhc
Confidence 235677777765432221 1 1234689999999999999988764
No 144
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.46 E-value=0.0062 Score=62.41 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=104.9
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe-CCCcCHHHHHHHHHHHhcCCCCCCCcH----HHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV-SDDFDVLSISKALLESITSATCDLKTV----DEVQVQ 242 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~-s~~~~~~~~~~~il~~l~~~~~~~~~~----~~~~~~ 242 (1277)
+.+++.++|.-|.|||.+++....... . +.++-|.+ .+......+...+...+..+. .... +++.+.
T Consensus 50 ~qg~~~vtGevGsGKTv~~Ral~~s~~--~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p--~~~~~~~~e~~~~~ 121 (269)
T COG3267 50 GQGILAVTGEVGSGKTVLRRALLASLN--E----DQVAVVVIDKPTLSDATLLEAIVADLESQP--KVNVNAVLEQIDRE 121 (269)
T ss_pred CCceEEEEecCCCchhHHHHHHHHhcC--C----CceEEEEecCcchhHHHHHHHHHHHhccCc--cchhHHHHHHHHHH
Confidence 446999999999999999995543211 1 11222333 344567777788887777632 2233 333344
Q ss_pred HHHhh-cCce-EEEEecCcccccHHhHHhhhcccccCCCC---cEEEEEcccc--------ccccccCCCce-eecCCCC
Q 000803 243 LKKAV-DGKR-FLLVLDDVWNEDYSLWVDLKAPFLAAAPN---SKMIITTRNS--------HVASTMGPIDH-YNLEHLL 308 (1277)
Q Consensus 243 l~~~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~---s~iivTtr~~--------~v~~~~~~~~~-~~l~~L~ 308 (1277)
+.... +++| ..++.|+..+......+.++....-...+ -+|+..-..+ .....-..... |.+.|++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 44333 5677 99999999776555555544332211111 1233322211 00000011123 8999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHh
Q 000803 309 DDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGG 355 (1277)
Q Consensus 309 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~ 355 (1277)
.++...++..+.-+... +.+-...+....|..+..|.|.+|.-++.
T Consensus 202 ~~~t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 202 EAETGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred hHHHHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 99999988887755422 22222345566799999999999987753
No 145
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.45 E-value=0.00078 Score=70.29 Aligned_cols=183 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEE-EEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAW-VCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~w-v~~s~~~~~~~~~~ 220 (1277)
..++|.+..+..+.+.+.. ...++...+|++|.|||+-|..++...-..+ .|.+++- .++|+.-... +.+
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~--~~~~rvl~lnaSderGis-vvr 106 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQ--LFPCRVLELNASDERGIS-VVR 106 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCcc--ccccchhhhccccccccc-chh
Confidence 4688999999988888866 2357889999999999999988876543333 5555432 3444432221 111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhh--cCce-EEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAV--DGKR-FLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM 296 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~ 296 (1277)
+-. .+.+.+........ .-++ =.+|||+++....+.|..+...+-.....++.|..+..- .+...+
T Consensus 107 ~Ki----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi 176 (346)
T KOG0989|consen 107 EKI----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPL 176 (346)
T ss_pred hhh----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHH
Confidence 100 01111110000000 0123 478899999999999999998887766677765554432 222111
Q ss_pred -CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 297 -GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 297 -~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
..-..|..++|.+++...-+...+-..+- ....+..+.|++.++|--
T Consensus 177 ~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v----~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 177 VSRCQKFRFKKLKDEDIVDRLEKIASKEGV----DIDDDALKLIAKISDGDL 224 (346)
T ss_pred HhhHHHhcCCCcchHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHcCCcH
Confidence 11245889999999988888777743222 223455677999998853
No 146
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.45 E-value=0.0025 Score=69.92 Aligned_cols=161 Identities=17% Similarity=0.117 Sum_probs=82.6
Q ss_pred ccccchhhHHHHHHHHh---ccc-----c-cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc
Q 000803 143 VVFGREEDKTKILEMVL---TDT-----A-ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF 213 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~---~~~-----~-~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~ 213 (1277)
.++|-++.++++.+... ... . .......-+.++|++|+|||++|+.++....... ......|+.++.
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g--~~~~~~~v~v~~-- 98 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLG--YVRKGHLVSVTR-- 98 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CcccceEEEecH--
Confidence 47887777666544321 110 0 0001123578999999999999977765321111 111122444442
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccc---------cHHhHHhhhcccccCCCCcEEE
Q 000803 214 DVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNE---------DYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
. ++...+.+.. .......+.+. ..-+|+||++..- ....+..+...+.....+.+||
T Consensus 99 --~----~l~~~~~g~~-----~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI 164 (284)
T TIGR02880 99 --D----DLVGQYIGHT-----APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVI 164 (284)
T ss_pred --H----HHhHhhcccc-----hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 1222222211 12222233332 2358899999622 1223344444444444566777
Q ss_pred EEcccccccccc--------CCCceeecCCCCHHHHHHHHHHhhc
Q 000803 285 ITTRNSHVASTM--------GPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 285 vTtr~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
+++......... .....+.+++++.+|-.+++...+-
T Consensus 165 ~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 165 LAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 776543221111 1124689999999999999887763
No 147
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0025 Score=71.03 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=94.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc------------------cCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVED------------------SGKFDVKAWVCVSDDFDVLSISKALLESITSAT 230 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~------------------~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~ 230 (1277)
...+.++|+.|+||||+|..++...-... +.|-| ..|+.-.. .
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~------------------~ 82 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEE------------------A 82 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccC------------------C
Confidence 45688999999999999988876432211 00111 11221100 0
Q ss_pred CCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccc-cccc-cCCCceeec
Q 000803 231 CDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSH-VAST-MGPIDHYNL 304 (1277)
Q Consensus 231 ~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~-v~~~-~~~~~~~~l 304 (1277)
.....++++.+.+... ..+++-++|+|+++..+....+.+...+-.-..++.+|+||.+.+ +... .+....+.+
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~ 162 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQAC 162 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeC
Confidence 0112334443322211 123444556799998888888888887766556777777777653 3322 122356899
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 305 EHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 305 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
.+++.+++.+.+...... ..++.+..++..++|.|..+..+
T Consensus 163 ~~~~~~~~~~~L~~~~~~--------~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 163 PLPSNEESLQWLQQALPE--------SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CCcCHHHHHHHHHHhccc--------CChHHHHHHHHHcCCCHHHHHHH
Confidence 999999999888765311 01233456789999999765544
No 148
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.43 E-value=0.0027 Score=75.15 Aligned_cols=160 Identities=15% Similarity=0.147 Sum_probs=92.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
..-+.|+|..|+|||+||+.+++...... .--.+++++.. .+..++...+... ..+. +.+.++
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~--~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~~----~~~~~~ 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKN--PNAKVVYVTSE------KFTNDFVNALRNN-----TMEE----FKEKYR 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEEEHH------HHHHHHHHHHHcC-----cHHH----HHHHHh
Confidence 35688999999999999999998643221 11235566532 2333444444221 1222 233333
Q ss_pred CceEEEEecCcccccHHh-H-Hhhhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHH
Q 000803 249 GKRFLLVLDDVWNEDYSL-W-VDLKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIF 316 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~-~-~~l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 316 (1277)
+.-+||+||++...... + ..+...+.. ...|..||+|+... .+...+.....+.+++.+.++-.+++
T Consensus 211 -~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 211 -SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAIL 289 (450)
T ss_pred -cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHH
Confidence 23489999996421111 1 222222211 12345688877643 12333444457899999999999999
Q ss_pred HHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 317 KTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
.+.+-.. .....+++..-|++.+.|..-.+
T Consensus 290 ~~~~~~~----~~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 290 KKKAEEE----GIDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHc----CCCCCHHHHHHHHcCcCCCHHHH
Confidence 9888432 11234567788999988876643
No 149
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.0024 Score=77.36 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=106.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+.-++.+.+++.... -...+.++|+.|+||||+|+.+.+..-... ..+ ....+.-...++
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~--~~~-------~~~c~~c~~c~~ 81 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQ--GLT-------AEPCNVCPPCVE 81 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCC--CCC-------CCCCCccHHHHH
Confidence 368999988888888886532 235678999999999999998876432211 000 000000011111
Q ss_pred HHHHhcC-----CCCCCCcHHHH---HHHHHHh-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc-cccc
Q 000803 222 LLESITS-----ATCDLKTVDEV---QVQLKKA-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT-RNSH 291 (1277)
Q Consensus 222 il~~l~~-----~~~~~~~~~~~---~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt-r~~~ 291 (1277)
|...-.. ........+++ .+.++.. ..+++-++|+|++........+.+...+-.......+|++| ....
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 1000000 00001112222 2222111 13455688999998776666777777665544566666544 4444
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch-HHHHHHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP-LAAKTLG 354 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP-Lai~~~~ 354 (1277)
+...+ .....+++++++.++....+...+-... .....+....|++.++|.. .|+..+-
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg----i~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG----ISISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43322 2235688899999988877766553211 1122455677899999865 4554443
No 150
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.38 E-value=0.0031 Score=64.93 Aligned_cols=127 Identities=21% Similarity=0.255 Sum_probs=74.3
Q ss_pred CCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 139 PTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 139 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
+.-..++|.+.+++.+++-...--.. ....-+-++|..|.|||++++++.+....+. .--|.|...
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~G------LRlIev~k~------ 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQG------LRLIEVSKE------ 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcC------ceEEEECHH------
Confidence 34567999999999888654322111 2234577899999999999999988543221 112222221
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc-HHhHHhhhccccc----CCCCcEEEEEccccccc
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFLA----AAPNSKMIITTRNSHVA 293 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~----~~~~s~iivTtr~~~v~ 293 (1277)
+..++..+.+.++. ...||+|++||+.-+. ...+..++..+-. ...+..|.+||-.++..
T Consensus 90 -------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv 154 (249)
T PF05673_consen 90 -------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLV 154 (249)
T ss_pred -------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhcc
Confidence 22344455555553 3579999999984322 2345555554432 22355566666555544
Q ss_pred c
Q 000803 294 S 294 (1277)
Q Consensus 294 ~ 294 (1277)
.
T Consensus 155 ~ 155 (249)
T PF05673_consen 155 P 155 (249)
T ss_pred c
Confidence 3
No 151
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.35 E-value=1.2e-05 Score=72.69 Aligned_cols=91 Identities=30% Similarity=0.308 Sum_probs=56.2
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCC-CCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCe
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFED-LRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCH 627 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~-l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 627 (1277)
+.+..+|...+|++|.+..+|..|.. ...+..|+|++|.|..+|.++..++.|+.|+++. +.+...|..|..|.+|-.
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDM 127 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHH
Confidence 34455666666666666666655533 3366666666666666666666666666666666 356666666666666666
Q ss_pred eeecCccccccCCC
Q 000803 628 LDIRGAILLKEMPF 641 (1277)
Q Consensus 628 L~l~~~~~l~~~p~ 641 (1277)
|+..+|. ...+|-
T Consensus 128 Lds~~na-~~eid~ 140 (177)
T KOG4579|consen 128 LDSPENA-RAEIDV 140 (177)
T ss_pred hcCCCCc-cccCcH
Confidence 6666555 444443
No 152
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.33 E-value=0.005 Score=71.74 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=85.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.|+|+.|+|||+||+++++..... . ..+++++. ..+...+...+... .. ..+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~---~-~~v~yi~~------~~f~~~~~~~l~~~-----~~----~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES---G-GKILYVRS------ELFTEHLVSAIRSG-----EM----QRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc---C-CCEEEeeH------HHHHHHHHHHHhcc-----hH----HHHHHHcc-
Confidence 467899999999999999999854321 1 23455542 33344444444321 11 22333333
Q ss_pred ceEEEEecCcccccHHhH--Hhhhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNEDYSLW--VDLKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~--~~l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
+.-++++||+.......| +.+...+.. ...|..||+||... .+...+...-.+.+.+++.++-.+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 334888899855321111 122222211 12356788887542 222333344578999999999999998
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhhcCCc
Q 000803 318 THAFEGRDHNALEISESFRKKVVGKCGGL 346 (1277)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 346 (1277)
+++-... ....+++..-|++.+.|.
T Consensus 282 ~k~~~~~----~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALS----IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhcCCC
Confidence 8874321 122345555566666543
No 153
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.32 E-value=0.0054 Score=73.91 Aligned_cols=192 Identities=16% Similarity=0.142 Sum_probs=106.9
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.+...+.+.+++.... -...+-++|+.|+||||+|+.+....-... .-+ ..+.+.-...+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~--~~~-------~~pC~~C~~C~~ 81 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLN--PPD-------GEPCNECEICKA 81 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCC--CCC-------CCCCCccHHHHH
Confidence 468999999999998887642 235677899999999999998875332111 000 001111111111
Q ss_pred HHHHhcCC-----CCCCCcHHHHHHHHHH---h-hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEE-Eccccc
Q 000803 222 LLESITSA-----TCDLKTVDEVQVQLKK---A-VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMII-TTRNSH 291 (1277)
Q Consensus 222 il~~l~~~-----~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iiv-Ttr~~~ 291 (1277)
+......+ .......+++.+.+.+ . ..+++-++|+|++.......+..+...+-.......+|+ ||....
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 11110000 0011122222222111 1 245667889999987766677777766654444555554 444433
Q ss_pred ccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 292 VASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 292 v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
+...+ .....+...+++.++....+...+-...- ....+....|++.++|-+..+.
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi----~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGI----EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHH
Confidence 33221 22356888999999988888776632111 1224556778889988775443
No 154
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.30 E-value=0.00056 Score=65.94 Aligned_cols=22 Identities=45% Similarity=0.492 Sum_probs=19.9
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
|.|+|++|+||||+|+.++++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhc
Confidence 5699999999999999999854
No 155
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0052 Score=68.98 Aligned_cols=166 Identities=16% Similarity=0.146 Sum_probs=92.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcc-eEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFD-VKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~-~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
....+.|+|..|.|||.|++++.+..... ..+ .+++++ ......++...+.. .-.+..++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~---~~~a~v~y~~------se~f~~~~v~a~~~---------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN---GPNARVVYLT------SEDFTNDFVKALRD---------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh---CCCceEEecc------HHHHHHHHHHHHHh---------hhHHHHHHh
Confidence 35689999999999999999999854322 122 233332 23333344433322 112344444
Q ss_pred hcCceEEEEecCcccccH-HhHH-hhhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHH
Q 000803 247 VDGKRFLLVLDDVWNEDY-SLWV-DLKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWS 314 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~ 314 (1277)
. .-=++++||++--.. +.|. .+...|.. ...|..||+|++.. ++.+.+...-.+.+.+.+.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 334888999965211 1122 22222221 12344899998653 233344455679999999999999
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 315 IFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 315 Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
.+.+++....-.-+.+...-++..+.+-..-+.=|+..+
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l 290 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRL 290 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 999877543333333334444444444344444444333
No 156
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.28 E-value=0.0012 Score=81.54 Aligned_cols=158 Identities=16% Similarity=0.207 Sum_probs=86.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCC---cceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGK---FDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~---f~~~~wv~~s~~~~~~~~ 218 (1277)
..++||+++++++++.|..... .-+.++|.+|+|||++|+.++....... .. .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~-vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGD-VPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcC-CCchhcCCeEEec-----cHHHH
Confidence 3589999999999998876422 2346899999999999999886431111 01 23444421 11111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHH-HHHHhhcCceEEEEecCcccc--------cHHhHHhhhcccccCCCCcEEEEEccc
Q 000803 219 SKALLESITSATCDLKTVDEVQV-QLKKAVDGKRFLLVLDDVWNE--------DYSLWVDLKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~~s~iivTtr~ 289 (1277)
+ .+... ..+.+...+ .+...-+.++.+|++|++..- ...+...+..++...+ .-+||-+|..
T Consensus 254 ----l---aG~~~-~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~ 324 (758)
T PRK11034 254 ----L---AGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTY 324 (758)
T ss_pred ----h---cccch-hhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCCh
Confidence 1 11110 112222222 222222346789999999531 1222333344443322 3445555544
Q ss_pred cccccc-------cCCCceeecCCCCHHHHHHHHHHhh
Q 000803 290 SHVAST-------MGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 290 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
.+.... ......+.+++.+.+++.+++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 332111 1233579999999999999988654
No 157
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.27 E-value=0.0034 Score=74.32 Aligned_cols=159 Identities=12% Similarity=0.104 Sum_probs=90.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
..+.|+|..|+|||.|++++++...... .-..+++++. .++..++...+... ..+. +++.++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~--~g~~V~Yita------eef~~el~~al~~~-----~~~~----f~~~y~~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLY--PGTRVRYVSS------EEFTNEFINSIRDG-----KGDS----FRRRYRE 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhC--CCCeEEEeeH------HHHHHHHHHHHHhc-----cHHH----HHHHhhc
Confidence 3489999999999999999998543211 1123456553 33344444433211 1122 2233332
Q ss_pred ceEEEEecCcccccH-HhHHh-hhccccc-CCCCcEEEEEcccc---------ccccccCCCceeecCCCCHHHHHHHHH
Q 000803 250 KRFLLVLDDVWNEDY-SLWVD-LKAPFLA-AAPNSKMIITTRNS---------HVASTMGPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~~s~iivTtr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
-=+|||||+..... ..|.. +...+.. ...|..|||||... .+.+.+...-.+.+++.+.+.-.+++.
T Consensus 378 -~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 378 -MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILR 456 (617)
T ss_pred -CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHH
Confidence 34788999965322 22222 2222211 12356788888753 233344445678999999999999999
Q ss_pred HhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 318 THAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
+++-... ....+++.+-|++.+.+..-.+
T Consensus 457 kka~~r~----l~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 457 KKAVQEQ----LNAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHhcC----CCCCHHHHHHHHHhccCCHHHH
Confidence 8874322 1223566677777776654433
No 158
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.26 E-value=4.4e-05 Score=69.07 Aligned_cols=102 Identities=19% Similarity=0.213 Sum_probs=59.2
Q ss_pred eeeEEecCCCCCCCCCcC---CCCCCccceeeccCCcccccccccccc-ccCcEEEecCCcCccccchhhccccCcCeee
Q 000803 554 KLRLLSLQGYYIGELPIP---FEDLRLLRYLNLADTDIRSLPESSCSL-LNLEILILRNCSSLIKLPSKIRRLINLCHLD 629 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~---~~~l~~Lr~L~L~~~~i~~lp~~i~~L-~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 629 (1277)
.+..++|+.|.+..+++. +....+|...+|++|.++..|+.+... +.+.+|++++ +.+..+|..+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence 344456666665544432 344555666666666666666655433 3666666666 45666666666666666666
Q ss_pred ecCccccccCCCCCCCCCCCcccCceee
Q 000803 630 IRGAILLKEMPFGMKELKNLQTLSNFVV 657 (1277)
Q Consensus 630 l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 657 (1277)
++.|. +...|.-|..|.+|-.|+.-.+
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcCCCC
Confidence 66665 5555555555555555554443
No 159
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.21 E-value=5.7e-05 Score=88.58 Aligned_cols=107 Identities=25% Similarity=0.369 Sum_probs=87.6
Q ss_pred CCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeee
Q 000803 551 KFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDI 630 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 630 (1277)
.+..+..+++..|.+..+-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++ +.|+.+.. +..|..|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhhee
Confidence 3455666668888888765668899999999999999999977789999999999999 57888764 788888999999
Q ss_pred cCccccccCCCCCCCCCCCcccCceeeCCCC
Q 000803 631 RGAILLKEMPFGMKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 631 ~~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 661 (1277)
.+|. +..++ ++..+++|+.+++.++.+..
T Consensus 148 ~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 148 SGNL-ISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccCc-chhcc-CCccchhhhcccCCcchhhh
Confidence 9997 66554 46668899999888887665
No 160
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.19 E-value=0.0028 Score=80.91 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=84.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
..++||+.++++++..|.... ..-+.++|.+|+|||++|..++....... ..-....+|.- ++..+.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l~ 241 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGALI 241 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHHh
Confidence 358999999999999986642 13455899999999999998877532111 00012233321 111110
Q ss_pred HHHHHHhcCCCCCCCcHH-HHHHHHHHhhc-CceEEEEecCccccc-------HHhHHhhhcccccCCCCcEEEEEcccc
Q 000803 220 KALLESITSATCDLKTVD-EVQVQLKKAVD-GKRFLLVLDDVWNED-------YSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 220 ~~il~~l~~~~~~~~~~~-~~~~~l~~~l~-~kr~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
.+.... .+.+ .+...+.+.-+ +++.+|++|++..-. ..+-..+..+....+ .-++|-+|...
T Consensus 242 -------a~~~~~-g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 242 -------AGAKYR-GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred -------hcchhh-hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 000001 1122 22223332222 468999999995321 011122333332222 23455555544
Q ss_pred ccccc-------cCCCceeecCCCCHHHHHHHHHHhh
Q 000803 291 HVAST-------MGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 291 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
+.... ......+.++..+.++..+++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 33111 1233568899999999999887653
No 161
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=4.8e-05 Score=78.05 Aligned_cols=88 Identities=11% Similarity=0.129 Sum_probs=49.3
Q ss_pred cccEEEeecccccccCc--CCCCCCCCcCEEeccCCCCccccc---CCCCCCCCceEEEccccCccchhhhhhhcccccC
Q 000803 1081 TISHVTISYCEKLDALP--NGMHKLQSLQYLKIKECPSILSFS---EEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLT 1155 (1277)
Q Consensus 1081 ~L~~L~l~~~~~l~~lp--~~l~~l~~L~~L~l~~c~~l~~l~---~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~ 1155 (1277)
.|+.|+++.|..++... --+.+|+.|.+|+++.|...+..- .....++|..|.++|....-... -......++|
T Consensus 235 ~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s-h~~tL~~rcp 313 (419)
T KOG2120|consen 235 NLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS-HLSTLVRRCP 313 (419)
T ss_pred cceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh-HHHHHHHhCC
Confidence 56666666666655432 124678888888888876544321 11234567777776633322222 1122335677
Q ss_pred CcccccccccCCCc
Q 000803 1156 SLIGLSIEECHDAE 1169 (1277)
Q Consensus 1156 ~L~~L~l~~~~~l~ 1169 (1277)
+|.+||++.|..++
T Consensus 314 ~l~~LDLSD~v~l~ 327 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLK 327 (419)
T ss_pred ceeeeccccccccC
Confidence 77777777776554
No 162
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.17 E-value=0.015 Score=64.20 Aligned_cols=178 Identities=12% Similarity=0.084 Sum_probs=100.0
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc------CCcceEEEEEeCCCcCHHHHHHHHHH
Q 000803 151 KTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS------GKFDVKAWVCVSDDFDVLSISKALLE 224 (1277)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~------~~f~~~~wv~~s~~~~~~~~~~~il~ 224 (1277)
.+.+.+.+..+ .-....-+.|+.|+||+++|..++...-.... +.....-++.....+|...+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 34455555443 22356779999999999999888653322110 00000001111111111100
Q ss_pred HhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CC
Q 000803 225 SITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GP 298 (1277)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~ 298 (1277)
.........++++.+..+.. ..+++=++|+|+++.........++..+-.-..++.+|++|.+. .+...+ +.
T Consensus 80 --~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR 157 (325)
T PRK06871 80 --EPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR 157 (325)
T ss_pred --ccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh
Confidence 00001112344443322221 23566688899999888888888888887666677777777654 343222 22
Q ss_pred CceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 299 IDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 299 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
...+.+.+++.++..+.+..... . . ...+...++.++|.|..+
T Consensus 158 C~~~~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 158 CQTWLIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred ceEEeCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 35789999999999988876541 1 0 112456778899999644
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.017 Score=63.84 Aligned_cols=95 Identities=9% Similarity=0.131 Sum_probs=64.9
Q ss_pred CceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCC
Q 000803 249 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDH 326 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 326 (1277)
+++=++|+|+++..+...-+.+...+-.-..++.+|++|... .+...+ +....+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~---~~- 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG---VS- 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC---CC-
Confidence 466799999998877767777777666555677777776643 333222 223568899999999988876531 11
Q ss_pred CchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 327 NALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
++.+..++..++|.|+.+..+
T Consensus 188 ------~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 188 ------ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred ------hHHHHHHHHHcCCCHHHHHHH
Confidence 223567899999999876544
No 164
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.0024 Score=76.71 Aligned_cols=52 Identities=13% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
-..++|-++.++++..++....... ...+++.|+|++|+||||+++.++...
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999998886542211 234689999999999999999998743
No 165
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.06 E-value=0.0065 Score=69.98 Aligned_cols=147 Identities=18% Similarity=0.126 Sum_probs=87.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGK 250 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~k 250 (1277)
++.|+|+-++||||+++.+.... .. . .+++...+......-+.+. ...+.+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~--~---~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LE--E---IIYINFDDLRLDRIELLDL-----------------LRAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Cc--c---eEEEEecchhcchhhHHHH-----------------HHHHHHhhccC
Confidence 99999999999999997775532 11 1 4555433321111111111 11111111227
Q ss_pred eEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccccc-----c-cCCCceeecCCCCHHHHHHHHHHhhcCCC
Q 000803 251 RFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHVAS-----T-MGPIDHYNLEHLLDDDCWSIFKTHAFEGR 324 (1277)
Q Consensus 251 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~-----~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 324 (1277)
+..|+||.|... ..|......+.+.++. +|++|+-+..... . .|....+.+-||+-.|...+-...+.
T Consensus 95 ~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~~--- 168 (398)
T COG1373 95 KSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEIE--- 168 (398)
T ss_pred CceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhcccccc---
Confidence 889999999766 7899988888887666 8999887654322 1 23446789999999998664320000
Q ss_pred CCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 325 DHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 325 ~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
. ..... .-+-.-..||.|-++..
T Consensus 169 -~---~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 169 -P---SKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred -h---hHHHH-HHHHHHHhCCCcHHHhC
Confidence 0 01111 22233357888887764
No 166
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.04 E-value=0.02 Score=63.19 Aligned_cols=153 Identities=13% Similarity=0.126 Sum_probs=93.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCC
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVKAWVCVSDDFDVLSISKALLESITSATC 231 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~ 231 (1277)
...+-++|+.|+||+++|..+..-.-... +.|.|. .|+.-.. ..
T Consensus 25 ~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~------------------~~ 85 (319)
T PRK06090 25 PGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEK------------------EG 85 (319)
T ss_pred ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCc------------------CC
Confidence 45788999999999999988765321111 112221 1111100 00
Q ss_pred CCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CCCceeec
Q 000803 232 DLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GPIDHYNL 304 (1277)
Q Consensus 232 ~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~~~~~~l 304 (1277)
....++++.+ +.+.+ .+++=++|+|++........+.+...+-.-..++.+|.+|.+. .+...+ +....+.+
T Consensus 86 ~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~ 164 (319)
T PRK06090 86 KSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVV 164 (319)
T ss_pred CcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeC
Confidence 1123344432 22322 3445688999998888888888888877666677776666654 343322 23357899
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 305 EHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 305 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
.+++.+++.+.+..... + .+..+++.++|.|+.+..+
T Consensus 165 ~~~~~~~~~~~L~~~~~---~---------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 165 TPPSTAQAMQWLKGQGI---T---------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred CCCCHHHHHHHHHHcCC---c---------hHHHHHHHcCCCHHHHHHH
Confidence 99999999888865321 1 1246788999999977644
No 167
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.04 E-value=0.0048 Score=78.36 Aligned_cols=158 Identities=13% Similarity=0.145 Sum_probs=82.7
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEE-EEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKA-WVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~-wv~~s~~~~~~~~ 218 (1277)
..++||+.+++++++.|.... ..-+.++|.+|+|||++|..+........ ..-....+ ++.++. +
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h
Confidence 358999999999999986643 23456999999999999999887432110 00012222 222221 1
Q ss_pred HHHHHHHhcCCCCCCCcHH-HHHHHHHHhh-cCceEEEEecCcccccH-------HhHHhhhcccccCCCCcEEEEEccc
Q 000803 219 SKALLESITSATCDLKTVD-EVQVQLKKAV-DGKRFLLVLDDVWNEDY-------SLWVDLKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~-~~~~~l~~~l-~~kr~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~~s~iivTtr~ 289 (1277)
. .+.... .+.+ .+...+.+.- .+++.+|++|++..-.. .+-..+..+.... ..-++|-+|..
T Consensus 246 ~-------ag~~~~-g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g~l~~IgaTt~ 316 (857)
T PRK10865 246 V-------AGAKYR-GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-GELHCVGATTL 316 (857)
T ss_pred h-------hccchh-hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-CCCeEEEcCCC
Confidence 0 000000 1111 2222222221 25689999999954210 0112223333222 23456656555
Q ss_pred ccccccc-------CCCceeecCCCCHHHHHHHHHHhh
Q 000803 290 SHVASTM-------GPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 290 ~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
.+....+ .....+.+..-+.++...++....
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 4432111 122356677778888888876543
No 168
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.04 E-value=0.0026 Score=62.32 Aligned_cols=88 Identities=20% Similarity=0.064 Sum_probs=47.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
..+.|+|++|+||||+|+.++...... ...++++..+........... ...................+.+..+.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPP----GGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLRLALALARK 76 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCC----CCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHHHHHHHHHh
Confidence 578999999999999999998754321 123555554443322211111 11111111112222223334444443
Q ss_pred c-eEEEEecCccccc
Q 000803 250 K-RFLLVLDDVWNED 263 (1277)
Q Consensus 250 k-r~LlVlDdv~~~~ 263 (1277)
. ..+|++|+++...
T Consensus 77 ~~~~viiiDei~~~~ 91 (148)
T smart00382 77 LKPDVLILDEITSLL 91 (148)
T ss_pred cCCCEEEEECCcccC
Confidence 3 4999999997653
No 169
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.01 E-value=3.1e-05 Score=88.87 Aligned_cols=110 Identities=25% Similarity=0.235 Sum_probs=62.3
Q ss_pred hhhhcCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccC
Q 000803 545 LYDLLPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLIN 624 (1277)
Q Consensus 545 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~ 624 (1277)
....+.-++.|+.|+|++|.+...- .+..|.+|+.|||++|.+..+|.--..=.+|+.|.+++| .++.+- +|.+|.+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL~-gie~Lks 255 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTLR-GIENLKS 255 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhhh-hHHhhhh
Confidence 3344455566677777777666653 566667777777777776666652212223777777763 555553 3667777
Q ss_pred cCeeeecCccccccCCC--CCCCCCCCcccCceeeC
Q 000803 625 LCHLDIRGAILLKEMPF--GMKELKNLQTLSNFVVG 658 (1277)
Q Consensus 625 L~~L~l~~~~~l~~~p~--~i~~L~~L~~L~~~~~~ 658 (1277)
|++||+++|- +..... -++.|..|..|++-+|.
T Consensus 256 L~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 256 LYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 7777777664 222111 13445555556555543
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.00 E-value=0.0043 Score=71.45 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=86.1
Q ss_pred CccccchhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
..+.|.+..++++.+.+.-.-. -+-...+-+.++|++|+|||++|+.+++... . .| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~--~--~f---i~V~~se--- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETS--A--TF---LRVVGSE--- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhC--C--CE---EEEecch---
Confidence 3567889888888877632100 0002345678999999999999999988432 1 33 1121111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc-----------HH---hHHhhhccccc--CC
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED-----------YS---LWVDLKAPFLA--AA 278 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 278 (1277)
+. ....+ .....+...+.....+.+.+|+||+++... .. ....+...+.. ..
T Consensus 253 ---L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 253 ---LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred ---hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 11 11100 011112222333334578899999984310 00 01112211211 12
Q ss_pred CCcEEEEEccccccccc-c----CCCceeecCCCCHHHHHHHHHHhhc
Q 000803 279 PNSKMIITTRNSHVAST-M----GPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 279 ~~s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
.+.+||+||...+.... + .-...+.+...+.++..++|..++.
T Consensus 321 ~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 321 GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 35678888875433221 1 1235689999999999999987763
No 171
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.98 E-value=0.039 Score=69.11 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=87.1
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
+...+|.++-+++|++++............++.++|++|+||||+|+.++.... . .|- -+..+...+...+..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~--~--~~~---~i~~~~~~d~~~i~g 393 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATG--R--KYV---RMALGGVRDEAEIRG 393 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhC--C--CEE---EEEcCCCCCHHHhcc
Confidence 456889999999999988743211112346899999999999999999986321 1 231 233333323322211
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHh----HHhhhccccc---------------CCCCc
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSL----WVDLKAPFLA---------------AAPNS 281 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~~s 281 (1277)
.- ... .......+...+.+.-. ..-+++||.++...... ...+...+-+ .-.+.
T Consensus 394 ~~-~~~-----~g~~~G~~~~~l~~~~~-~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 394 HR-RTY-----IGSMPGKLIQKMAKVGV-KNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ch-hcc-----CCCCCcHHHHHHHhcCC-CCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCce
Confidence 00 000 01112233333433222 33478899996543211 1222222111 11334
Q ss_pred EEEEEccccccccc-cCCCceeecCCCCHHHHHHHHHHhh
Q 000803 282 KMIITTRNSHVAST-MGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 282 ~iivTtr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
-+|.|+....+... .+....+.+.+++.+|-.++..++.
T Consensus 467 ~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 467 MFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 44555544333221 1233568889999888888777665
No 172
>PRK10536 hypothetical protein; Provisional
Probab=96.97 E-value=0.0052 Score=64.22 Aligned_cols=130 Identities=17% Similarity=0.254 Sum_probs=72.4
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEE----eCCC--c---
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVC----VSDD--F--- 213 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~----~s~~--~--- 213 (1277)
.+.+|......+..++.+. .++.++|.+|.|||+||.++..+.-... .|+.++.+. +.+. |
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~--~~~kIiI~RP~v~~ge~LGfLPG 125 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHK--DVDRIIVTRPVLQADEDLGFLPG 125 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcC--CeeEEEEeCCCCCchhhhCcCCC
Confidence 4667888888888877542 4899999999999999998876422122 454333321 1110 0
Q ss_pred CHHHH----HHHHHHHhcCCCCCCCcHHHHHHHHH-----------HhhcCceE---EEEecCcccccHHhHHhhhcccc
Q 000803 214 DVLSI----SKALLESITSATCDLKTVDEVQVQLK-----------KAVDGKRF---LLVLDDVWNEDYSLWVDLKAPFL 275 (1277)
Q Consensus 214 ~~~~~----~~~il~~l~~~~~~~~~~~~~~~~l~-----------~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~ 275 (1277)
+..+- ++.+...+..- ...+.+...+. .+++++.+ +||+|.+.+.+..+...+..
T Consensus 126 ~~~eK~~p~~~pi~D~L~~~----~~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt--- 198 (262)
T PRK10536 126 DIAEKFAPYFRPVYDVLVRR----LGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT--- 198 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHH----hChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---
Confidence 11111 12222222110 00111111111 25566654 99999998876655444443
Q ss_pred cCCCCcEEEEEccc
Q 000803 276 AAAPNSKMIITTRN 289 (1277)
Q Consensus 276 ~~~~~s~iivTtr~ 289 (1277)
..+.+|++|+|--.
T Consensus 199 R~g~~sk~v~~GD~ 212 (262)
T PRK10536 199 RLGENVTVIVNGDI 212 (262)
T ss_pred hcCCCCEEEEeCCh
Confidence 34579999998543
No 173
>PRK08116 hypothetical protein; Validated
Probab=96.96 E-value=0.002 Score=69.78 Aligned_cols=103 Identities=20% Similarity=0.189 Sum_probs=58.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.++|..|+|||.||.++++....+ ...+++++ ..+++..+........ ..+..+. .+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~----~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~~~----~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK----GVPVIFVN------FPQLLNRIKSTYKSSG--KEDENEI----IRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEE------HHHHHHHHHHHHhccc--cccHHHH----HHHhcC
Confidence 358899999999999999999865322 12356665 3334445544433211 1112222 233333
Q ss_pred ceEEEEecCcccccHHhHHh--hhccccc-CCCCcEEEEEccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVD--LKAPFLA-AAPNSKMIITTRN 289 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~~s~iivTtr~ 289 (1277)
-. ||||||+......+|.. +...+.. ...+..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 33 89999996544445543 2222221 1345678999864
No 174
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.95 E-value=0.04 Score=69.83 Aligned_cols=52 Identities=23% Similarity=0.375 Sum_probs=38.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..++|.++-++.+.+++............++.++|++|+|||++|+.+++..
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999998887653321111233589999999999999999998754
No 175
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.93 E-value=0.0092 Score=59.26 Aligned_cols=122 Identities=16% Similarity=0.180 Sum_probs=71.7
Q ss_pred cchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc----------------CCcceEEEEEe
Q 000803 146 GREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS----------------GKFDVKAWVCV 209 (1277)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~----------------~~f~~~~wv~~ 209 (1277)
|-++..+.+.+.+..+ .-...+.++|..|+||+++|..+++..-.... +...-..|+.-
T Consensus 1 gq~~~~~~L~~~~~~~-----~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcC-----CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 4455666666666543 22356889999999999999887653322110 01112233322
Q ss_pred CCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEE
Q 000803 210 SDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 210 s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
.... .....+++. .+.+.+ .+++=++|+||++......+..++..+-....++++|
T Consensus 76 ~~~~------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 76 DKKK------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTSS------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccc------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 2110 012233333 222222 2456689999999988888999998887777899999
Q ss_pred EEccccc
Q 000803 285 ITTRNSH 291 (1277)
Q Consensus 285 vTtr~~~ 291 (1277)
++|++..
T Consensus 137 L~t~~~~ 143 (162)
T PF13177_consen 137 LITNNPS 143 (162)
T ss_dssp EEES-GG
T ss_pred EEECChH
Confidence 8888754
No 176
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.93 E-value=0.0076 Score=69.03 Aligned_cols=179 Identities=16% Similarity=0.110 Sum_probs=94.6
Q ss_pred CccccchhhHHHHHHHHhcc----c---ccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 142 PVVFGREEDKTKILEMVLTD----T---AADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
..+.|.+..++++.+.+... + ..+-...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~----~f---i~i~~----- 212 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA----TF---IRVVG----- 212 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC----CE---EEEeh-----
Confidence 35788888888877765321 1 001123567889999999999999999885321 23 22211
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc-----------HH---hHHhhhccccc--CC
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED-----------YS---LWVDLKAPFLA--AA 278 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 278 (1277)
..+. ....+ .....+.+.+.......+.+|++|+++..- .. .+..+...+.. ..
T Consensus 213 -s~l~----~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 -SEFV----QKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred -HHHH----HHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 1111 11100 111122223333334678999999985310 00 11122222211 22
Q ss_pred CCcEEEEEccccccccc--c---CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 279 PNSKMIITTRNSHVAST--M---GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 279 ~~s~iivTtr~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
.+..||+||...+.... . .-...+.+...+.++..++|..+.... ........ .++++.+.|+-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~-~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKM-NLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcC-CCCcccCH----HHHHHHcCCCC
Confidence 45678888875543221 1 123468898899999888888665321 11111222 34666666654
No 177
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=6.7e-05 Score=77.01 Aligned_cols=150 Identities=17% Similarity=0.176 Sum_probs=96.8
Q ss_pred cCcCCCCCCCCcCEEeccCCCCcccccCCCC---CCCCceEEEccccCccchhhhhhhcccc-cCCcccccccccCCCcc
Q 000803 1095 ALPNGMHKLQSLQYLKIKECPSILSFSEEGF---PTNLKLIRIGGGVDAKMYKAVIQWGLHR-LTSLIGLSIEECHDAES 1170 (1277)
Q Consensus 1095 ~lp~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~l~~~~~~~~l~~~~~~~~~~-l~~L~~L~l~~~~~l~~ 1170 (1277)
.+-..+..-.+|+.|+++.|+.++.....-+ .+.|.+|.++++....... .....+ -+.|..|+|+||...-.
T Consensus 225 ~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V---tv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 225 PIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKV---TVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred HHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhh---hHHHhhhchhhhhhhhhhhHhhhh
Confidence 3444556678999999999999886543322 3577888886643322221 111222 36788899999754211
Q ss_pred CchhhhhccCCcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCCC----CCCCCccceeeccCChh----
Q 000803 1171 FPDEEMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPE----VGLPSSLLSLEIKNCPK---- 1242 (1277)
Q Consensus 1171 lp~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~~~L~~L~i~~c~~---- 1242 (1277)
...-..-..-.++|.+|++++|..++.=-...+..++.|++|.++.|=.+ .|+ ..--|+|..|++.||-.
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt~m 379 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDTTM 379 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCchHH
Confidence 11111112357889999999998887644456788999999999999433 343 22248999999999832
Q ss_pred --hHHHhcc
Q 000803 1243 --LRKQCKR 1249 (1277)
Q Consensus 1243 --L~~~~~~ 1249 (1277)
+++.|..
T Consensus 380 el~~e~~~~ 388 (419)
T KOG2120|consen 380 ELLKEMLSH 388 (419)
T ss_pred HHHHHhCcc
Confidence 5555543
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.88 E-value=0.00074 Score=82.55 Aligned_cols=109 Identities=20% Similarity=0.164 Sum_probs=78.9
Q ss_pred hcccccccccccccCcccceeehhhhhhhhhhcCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCcccccc--cc
Q 000803 517 FYEIEHLRTFLPLHKTDYIITCYITSMVLYDLLPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLP--ES 594 (1277)
Q Consensus 517 ~~~~~~lrsl~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp--~~ 594 (1277)
..-+|.||+|...+..- ...-+...+.+|++|+.||+++++++.+ .++++|++|+.|.+++-.+..-+ ..
T Consensus 144 g~~LPsL~sL~i~~~~~-------~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 144 GTMLPSLRSLVISGRQF-------DNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhhCcccceEEecCcee-------cchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 34578888887644321 1122445678899999999999999888 78999999999999987776432 46
Q ss_pred ccccccCcEEEecCCcCccccchh-------hccccCcCeeeecCcc
Q 000803 595 SCSLLNLEILILRNCSSLIKLPSK-------IRRLINLCHLDIRGAI 634 (1277)
Q Consensus 595 i~~L~~L~~L~L~~~~~l~~lp~~-------i~~L~~L~~L~l~~~~ 634 (1277)
+.+|++|++||+|.. .....|.- -..|++||.||.+++.
T Consensus 216 LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 788999999999974 33333321 1348899999998875
No 179
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.02 Score=64.49 Aligned_cols=150 Identities=12% Similarity=0.079 Sum_probs=88.7
Q ss_pred cccc-chhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc------------------cCCcce
Q 000803 143 VVFG-REEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED------------------SGKFDV 203 (1277)
Q Consensus 143 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~------------------~~~f~~ 203 (1277)
.++| -+.-++.+.+.+... .-....-++|+.|+||||+|..+.+..-... +.|.|.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~ 80 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDV 80 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCE
Confidence 3566 455566666666443 2345778999999999999988865422111 001111
Q ss_pred EEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCC
Q 000803 204 KAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAP 279 (1277)
Q Consensus 204 ~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 279 (1277)
. ++... ......+++.+.+... ..+++=++|+|++...+....+.+...+-....
T Consensus 81 ~-~i~~~--------------------~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~ 139 (329)
T PRK08058 81 H-LVAPD--------------------GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSG 139 (329)
T ss_pred E-Eeccc--------------------cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCC
Confidence 1 11000 0112233433333221 234556789999988777777778877776666
Q ss_pred CcEEEEEccccc-ccccc-CCCceeecCCCCHHHHHHHHHH
Q 000803 280 NSKMIITTRNSH-VASTM-GPIDHYNLEHLLDDDCWSIFKT 318 (1277)
Q Consensus 280 ~s~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 318 (1277)
++.+|.+|.+.. +...+ .....+.+.+++.++..+.+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 777777776532 33222 2235799999999998777764
No 180
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.028 Score=62.88 Aligned_cols=179 Identities=13% Similarity=0.064 Sum_probs=100.8
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc------cCCcceEEEEEeCCCcCHHHHHHHHHH
Q 000803 151 KTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED------SGKFDVKAWVCVSDDFDVLSISKALLE 224 (1277)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~------~~~f~~~~wv~~s~~~~~~~~~~~il~ 224 (1277)
-+++.+.+..+ .-...+-+.|+.|+||+++|..++...-... .+.....-++.....+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 44555555443 2345788999999999999988765332111 000000011111111111100
Q ss_pred HhcCCCC-CCCcHHHHHHHHHHh----hcCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-ccccc-cC
Q 000803 225 SITSATC-DLKTVDEVQVQLKKA----VDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVAST-MG 297 (1277)
Q Consensus 225 ~l~~~~~-~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~-~~ 297 (1277)
..... ....++++.+..+.. ..+++=++|+|+++..+....+.+...+-.-..++.+|.+|.+. .+... .+
T Consensus 80 --~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 80 --TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred --ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 00000 112344444322221 23567799999998888778888888776666677777766654 34432 22
Q ss_pred CCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHH
Q 000803 298 PIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 298 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 351 (1277)
....+.+.+++.+++.+.+..... ...+.+..+++.++|.|..+.
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~~~~---------~~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 158 RCRLHYLAPPPEQYALTWLSREVT---------MSQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccccCCCCCHHHHHHHHHHccC---------CCHHHHHHHHHHcCCCHHHHH
Confidence 235689999999998887765321 012335678999999996443
No 181
>PRK08118 topology modulation protein; Reviewed
Probab=96.84 E-value=0.00056 Score=68.31 Aligned_cols=35 Identities=34% Similarity=0.583 Sum_probs=27.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEE
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAW 206 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~w 206 (1277)
-|.|+|++|+||||||+.+++...... .+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~-~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPV-HHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCc-eecchhhc
Confidence 488999999999999999998654431 25676665
No 182
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.73 E-value=0.038 Score=69.61 Aligned_cols=120 Identities=15% Similarity=0.187 Sum_probs=69.1
Q ss_pred CccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||+||+.++... +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-------~~~~~~~d~se~~~~~~- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-------GVHLERFDMSEYMEKHT- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-------cCCeEEEeCchhhhccc-
Confidence 4578888888888888764321 111234578899999999999999998743 12235555544222111
Q ss_pred HHHHHHHhcCCCC--CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccc
Q 000803 219 SKALLESITSATC--DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFL 275 (1277)
Q Consensus 219 ~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 275 (1277)
+...++.... .......+.+.+++ ...-+++||+++..+.+.++.+...+.
T Consensus 526 ---~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 ---VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred ---HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 1112222111 11112223333321 334699999999887777777766554
No 183
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.73 E-value=0.00029 Score=74.55 Aligned_cols=64 Identities=31% Similarity=0.425 Sum_probs=36.3
Q ss_pred hhhcCCCCeeeEEecCCCCC----CCCCcC-------CCCCCccceeeccCCccc-c----ccccccccccCcEEEecCC
Q 000803 546 YDLLPKFKKLRLLSLQGYYI----GELPIP-------FEDLRLLRYLNLADTDIR-S----LPESSCSLLNLEILILRNC 609 (1277)
Q Consensus 546 ~~~~~~l~~Lr~L~L~~~~i----~~lp~~-------~~~l~~Lr~L~L~~~~i~-~----lp~~i~~L~~L~~L~L~~~ 609 (1277)
...+.+.+.||..+|++-.. .++|+. +-...+|++||||.|-+. . +-.-+.+.+.|+.|.|.+|
T Consensus 51 ~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~ 130 (382)
T KOG1909|consen 51 AKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC 130 (382)
T ss_pred HHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence 34455566777777776432 233432 234457777777777543 1 2223455667777777766
No 184
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.71 E-value=0.021 Score=66.85 Aligned_cols=169 Identities=15% Similarity=0.112 Sum_probs=87.9
Q ss_pred CccccchhhHHHHHHHHhccc-------ccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccC-CcceEEEEEeCCCc
Q 000803 142 PVVFGREEDKTKILEMVLTDT-------AADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSG-KFDVKAWVCVSDDF 213 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~-~f~~~~wv~~s~~~ 213 (1277)
..+.|.+..++++.+.+...- ...-...+-+.++|++|+|||++|+.+++........ ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 357789999988888763210 0000224568899999999999999999865322100 1122344444331
Q ss_pred CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccH-------Hh-----HHhhhcccccC--C
Q 000803 214 DVLSISKALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDY-------SL-----WVDLKAPFLAA--A 278 (1277)
Q Consensus 214 ~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~-------~~-----~~~l~~~l~~~--~ 278 (1277)
. ++....+. .......+....++. -.+++++|+||+++..-. .+ ...+...+... .
T Consensus 261 ---e----Ll~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---E----LLNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---h----hcccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 0 11110000 000111122222222 235789999999964210 01 11222222221 1
Q ss_pred CCcEEEEEcccccccc-cc----CCCceeecCCCCHHHHHHHHHHhh
Q 000803 279 PNSKMIITTRNSHVAS-TM----GPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 279 ~~s~iivTtr~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
.+..||.||...+... .+ .-...+.++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 3445566665443221 11 123468999999999999999876
No 185
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.70 E-value=0.0025 Score=66.34 Aligned_cols=36 Identities=31% Similarity=0.360 Sum_probs=28.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV 209 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~ 209 (1277)
-.++|+|..|.|||||+..+..+.. . .|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~--~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--H--KFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--c--cCCEEEEEec
Confidence 3578999999999999999987542 2 6777776654
No 186
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.70 E-value=5e-05 Score=87.20 Aligned_cols=104 Identities=22% Similarity=0.189 Sum_probs=86.6
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchh-hccccCcCeeeec
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSK-IRRLINLCHLDIR 631 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 631 (1277)
..|.+-+.++|.+..+-.++.-+.+|+.|||++|++...- .+..|.+|++|||++ +.+..+|.- ...+ +|+.|.++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeec
Confidence 4677788889988888888888999999999999998875 789999999999999 478888862 2233 49999999
Q ss_pred CccccccCCCCCCCCCCCcccCceeeCCCC
Q 000803 632 GAILLKEMPFGMKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 632 ~~~~l~~~p~~i~~L~~L~~L~~~~~~~~~ 661 (1277)
+|. ++.+ .+|.+|++|+.|++.+|-+..
T Consensus 241 nN~-l~tL-~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 241 NNA-LTTL-RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred ccH-HHhh-hhHHhhhhhhccchhHhhhhc
Confidence 997 6655 479999999999999886654
No 187
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.025 Score=66.50 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=92.1
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
+..-+|-++-+++|+++|....-...-+-+++.+||++|||||.|++.++..... .| +-+.+..--|..++--
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R----kf---vR~sLGGvrDEAEIRG 394 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR----KF---VRISLGGVRDEAEIRG 394 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC----CE---EEEecCccccHHHhcc
Confidence 4567899999999999996543222234479999999999999999999874321 34 2233333333322210
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccH-------HhHHhhhcc-----ccc----C-CCCcEE
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDY-------SLWVDLKAP-----FLA----A-APNSKM 283 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~~~~l~~~-----l~~----~-~~~s~i 283 (1277)
. ....-..-+..+.+.+++. +-+.=+++||.++.... ..+-.++.| |.+ . --=|.|
T Consensus 395 H------RRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 395 H------RRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred c------cccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 0 0000111223333334332 34556888999865322 112222222 111 0 012333
Q ss_pred -EEEccc-cc-cc-cccCCCceeecCCCCHHHHHHHHHHhhc
Q 000803 284 -IITTRN-SH-VA-STMGPIDHYNLEHLLDDDCWSIFKTHAF 321 (1277)
Q Consensus 284 -ivTtr~-~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 321 (1277)
-|||-+ -+ +. ..+....++++.+.+++|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 334433 22 22 2234457899999999998888777663
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.67 E-value=0.012 Score=65.27 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=63.0
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcce-EEEEEeCCC-cCHHHHHHHHHHHhcC
Q 000803 151 KTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDV-KAWVCVSDD-FDVLSISKALLESITS 228 (1277)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~-~~wv~~s~~-~~~~~~~~~il~~l~~ 228 (1277)
..++++.+..- +.-.-+.|+|..|+|||||++.+++..... +-+. ++|+.+.+. ..+.++.+.+...+..
T Consensus 120 ~~RvID~l~Pi-----GkGQR~LIvG~pGtGKTTLl~~la~~i~~~---~~dv~~vv~lIgER~~EV~df~~~i~~~Vva 191 (380)
T PRK12608 120 SMRVVDLVAPI-----GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN---HPEVHLMVLLIDERPEEVTDMRRSVKGEVYA 191 (380)
T ss_pred hHhhhhheeec-----CCCceEEEECCCCCCHHHHHHHHHHHHHhc---CCCceEEEEEecCCCCCHHHHHHHHhhhEEe
Confidence 34566766543 122456899999999999999988754221 2233 467666664 4677888888777765
Q ss_pred CCCCCCcHHH-----HHHHHHHhh--cCceEEEEecCcc
Q 000803 229 ATCDLKTVDE-----VQVQLKKAV--DGKRFLLVLDDVW 260 (1277)
Q Consensus 229 ~~~~~~~~~~-----~~~~l~~~l--~~kr~LlVlDdv~ 260 (1277)
...+...... ....+-+++ ++++++||+|++-
T Consensus 192 st~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 192 STFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 4433222111 111122222 5899999999993
No 189
>CHL00176 ftsH cell division protein; Validated
Probab=96.64 E-value=0.027 Score=68.48 Aligned_cols=178 Identities=16% Similarity=0.156 Sum_probs=94.9
Q ss_pred CccccchhhHHHHHHH---Hhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH
Q 000803 142 PVVFGREEDKTKILEM---VLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV 215 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~---L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~ 215 (1277)
..++|.++.++++.+. +..... -.....+-+.++|++|+|||+||+.++..... . |+.++..
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~----p-----~i~is~s--- 250 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV----P-----FFSISGS--- 250 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC----C-----eeeccHH---
Confidence 3577877666555444 332211 00122456899999999999999999874321 2 2222211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc----------HHh----HHhhhccccc--CCC
Q 000803 216 LSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED----------YSL----WVDLKAPFLA--AAP 279 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~ 279 (1277)
++. .... ......+...+.+.....+++|++||++.-. ... +..+...+.. ...
T Consensus 251 -~f~----~~~~-----g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~ 320 (638)
T CHL00176 251 -EFV----EMFV-----GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK 320 (638)
T ss_pred -HHH----HHhh-----hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC
Confidence 110 0000 0112233344555556788999999995321 111 2222222211 234
Q ss_pred CcEEEEEccccccccc-c----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCc
Q 000803 280 NSKMIITTRNSHVAST-M----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGL 346 (1277)
Q Consensus 280 ~s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 346 (1277)
+-.||.||...+.... + .-...+.++..+.++-.++++.++-.. .. ........+++.+.|.
T Consensus 321 ~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-~~----~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 321 GVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-KL----SPDVSLELIARRTPGF 387 (638)
T ss_pred CeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-cc----chhHHHHHHHhcCCCC
Confidence 5567777765432221 1 123568888899999999998877421 11 1122345677888773
No 190
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.64 E-value=0.002 Score=64.95 Aligned_cols=100 Identities=21% Similarity=0.256 Sum_probs=50.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.++|..|+|||.||..+.+....+ .+ .+.|+++ .+++.. +.... .....+...+. +.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~---g~-~v~f~~~------~~L~~~----l~~~~-~~~~~~~~~~~----l~- 107 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK---GY-SVLFITA------SDLLDE----LKQSR-SDGSYEELLKR----LK- 107 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT---T---EEEEEH------HHHHHH----HHCCH-CCTTHCHHHHH----HH-
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC---Cc-ceeEeec------Cceecc----ccccc-cccchhhhcCc----cc-
Confidence 568999999999999999998754322 22 3566653 333333 33221 11122222222 22
Q ss_pred ceEEEEecCcccccHHhHHh--hhcccccCCCCcEEEEEccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVD--LKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~~~~s~iivTtr~ 289 (1277)
+-=||||||+.......|.. +...+.....+..+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 23478899997765555543 11111111112368888864
No 191
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.045 Score=63.47 Aligned_cols=88 Identities=19% Similarity=0.135 Sum_probs=46.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..+++|+|.+|+||||++..+......+. ....+..++.. .+.. .+.++.....++.......+...+...+++.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~--~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l 426 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQH--APRDVALVTTD-TQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL 426 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCceEEEecc-cccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh
Confidence 47999999999999999988876432221 12234445432 2222 2222222223322222223344555555443
Q ss_pred hcCceEEEEecCccc
Q 000803 247 VDGKRFLLVLDDVWN 261 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~ 261 (1277)
. +.=+||+|....
T Consensus 427 -~-~~DLVLIDTaG~ 439 (559)
T PRK12727 427 -R-DYKLVLIDTAGM 439 (559)
T ss_pred -c-cCCEEEecCCCc
Confidence 3 345888898854
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.62 E-value=0.03 Score=60.90 Aligned_cols=21 Identities=43% Similarity=0.526 Sum_probs=18.9
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000803 171 VIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
-+.+.|.+|+|||++|+.+..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 466899999999999999976
No 193
>PRK08181 transposase; Validated
Probab=96.58 E-value=0.0043 Score=66.74 Aligned_cols=101 Identities=19% Similarity=0.073 Sum_probs=53.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.++|++|+|||.||..+.+.... ....+.|+++ .++...+..... ....+.....+ .
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~----~g~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~l~~l-----~ 166 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIE----NGWRVLFTRT------TDLVQKLQVARR-----ELQLESAIAKL-----D 166 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHH----cCCceeeeeH------HHHHHHHHHHHh-----CCcHHHHHHHH-----h
Confidence 35899999999999999999874321 1223556553 334444432211 11222222222 1
Q ss_pred ceEEEEecCcccccHHhHH--hhhcccccCCCCcEEEEEcccc
Q 000803 250 KRFLLVLDDVWNEDYSLWV--DLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~--~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
+-=|||+||+.......|. .+...+.....+..+||||...
T Consensus 167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 3349999999654332322 2222222222234688888753
No 194
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.57 E-value=0.0012 Score=80.81 Aligned_cols=36 Identities=39% Similarity=0.486 Sum_probs=17.5
Q ss_pred ccccCcCeeeecCccccccCCCCCCCCCCCcccCceee
Q 000803 620 RRLINLCHLDIRGAILLKEMPFGMKELKNLQTLSNFVV 657 (1277)
Q Consensus 620 ~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~~~ 657 (1277)
.+.++|..||++++. +..+ .|+++|++||+|.+.+.
T Consensus 170 ~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred hccCccceeecCCCC-ccCc-HHHhccccHHHHhccCC
Confidence 344555555555554 3333 44555555555544433
No 195
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.046 Score=58.85 Aligned_cols=201 Identities=16% Similarity=0.129 Sum_probs=110.6
Q ss_pred ccccchhhHHHHHHHHhccccc-------CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH
Q 000803 143 VVFGREEDKTKILEMVLTDTAA-------DHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV 215 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~ 215 (1277)
.+=|-++.+++|.+.+--.-.. +-..++=|-++|++|.|||-||++|+++... .| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A----tF-----IrvvgS--- 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA----TF-----IRVVGS--- 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc----eE-----EEeccH---
Confidence 4557788888887765322100 0133566889999999999999999985322 33 222221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC-ceEEEEecCccccc--------------HHhHHhhhcccccC--C
Q 000803 216 LSISKALLESITSATCDLKTVDEVQVQLKKAVDG-KRFLLVLDDVWNED--------------YSLWVDLKAPFLAA--A 278 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~--------------~~~~~~l~~~l~~~--~ 278 (1277)
+ +.+..-+. -..+.+.+.+..+. .+..|++|.++... +-..-+++..+-.+ .
T Consensus 220 -E----lVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 220 -E----LVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred -H----HHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1 22222111 13444555555544 58999999884311 11122334444333 3
Q ss_pred CCcEEEEEcccccccccc-----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch----HH
Q 000803 279 PNSKMIITTRNSHVASTM-----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP----LA 349 (1277)
Q Consensus 279 ~~s~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP----La 349 (1277)
.+-|||..|-..++..-. .-.+.+++..-+.+.-.++|.-++-.- .....-.++ .+++.|.|.- -|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~e----~la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDLE----LLARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCHH----HHHHhcCCCchHHHHH
Confidence 466899888766654322 223567888666666677787776322 111222333 4666666653 45
Q ss_pred HHHHHhhhcCC------ChhhHHHHHhh
Q 000803 350 AKTLGGLLRTT------TYDMWDDILDS 371 (1277)
Q Consensus 350 i~~~~~~L~~~------~~~~w~~~l~~ 371 (1277)
+.+=|++++-+ +.+++..+.+.
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 55556665322 45566555543
No 196
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.00071 Score=69.75 Aligned_cols=81 Identities=26% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCeeeEEecCCCCCCCC---CcCCCCCCccceeeccCCccccccccc-cccccCcEEEecCCcCcc--ccchhhccccCc
Q 000803 552 FKKLRLLSLQGYYIGEL---PIPFEDLRLLRYLNLADTDIRSLPESS-CSLLNLEILILRNCSSLI--KLPSKIRRLINL 625 (1277)
Q Consensus 552 l~~Lr~L~L~~~~i~~l---p~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L 625 (1277)
.+.++.|||.+|.|+.- -..+.+|++|++|+|+.|.+..--.+. ..+.||++|-|.+ +.+. ..-..+..++++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhh
Confidence 45566666666665432 223455666666666666443221111 2445666666655 2221 122223444445
Q ss_pred CeeeecCc
Q 000803 626 CHLDIRGA 633 (1277)
Q Consensus 626 ~~L~l~~~ 633 (1277)
+.|+++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55554444
No 197
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.56 E-value=0.0028 Score=62.07 Aligned_cols=103 Identities=23% Similarity=0.214 Sum_probs=74.1
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCcccccccccc-ccccCcEEEecCCcCccccch--hhccccCcCeee
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSC-SLLNLEILILRNCSSLIKLPS--KIRRLINLCHLD 629 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 629 (1277)
.....+||++|.+..++ .|..+..|.+|.|.+|+|+.+-..+. .+.+|++|.|.+| ++.++-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 35567899999887774 57788899999999999998855554 4567999999984 6666543 245678888888
Q ss_pred ecCccccccCCCC----CCCCCCCcccCceeeC
Q 000803 630 IRGAILLKEMPFG----MKELKNLQTLSNFVVG 658 (1277)
Q Consensus 630 l~~~~~l~~~p~~----i~~L~~L~~L~~~~~~ 658 (1277)
+-+|. ...-+.- +.++++|++|+...+.
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 88876 4433321 6677888888765543
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.56 E-value=0.011 Score=68.50 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=111.6
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKAL 222 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 222 (1277)
.+||-+.-...|...+....- ..-....|+-|+||||+|+-++...-... | ....++..-...++|
T Consensus 17 evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~--------~-~~~ePC~~C~~Ck~I 82 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN--------G-PTAEPCGKCISCKEI 82 (515)
T ss_pred HhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC--------C-CCCCcchhhhhhHhh
Confidence 579999999999998876532 24567899999999999998876332221 1 112222222333333
Q ss_pred HHHhcC-----CCCCCCcHHHHHHHHHHhh----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cc
Q 000803 223 LESITS-----ATCDLKTVDEVQVQLKKAV----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HV 292 (1277)
Q Consensus 223 l~~l~~-----~~~~~~~~~~~~~~l~~~l----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v 292 (1277)
...-.. +......++++.+.+.+.. ++|-=+.|+|.|.-.....|..+..-+-.-...-..|..|++. .+
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKI 162 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcC
Confidence 222000 0001122333333333222 3455588999998777788888888776655566666655554 44
Q ss_pred ccc-cCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH
Q 000803 293 AST-MGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL 348 (1277)
Q Consensus 293 ~~~-~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 348 (1277)
... ......|.++.++.++-...+...+-.... ...++....|+++.+|..-
T Consensus 163 p~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I----~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 163 PNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGI----NIEEDALSLIARAAEGSLR 215 (515)
T ss_pred chhhhhccccccccCCCHHHHHHHHHHHHHhcCC----ccCHHHHHHHHHHcCCChh
Confidence 332 233467999999999888888776643222 2223445567777777543
No 199
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.53 E-value=0.082 Score=62.10 Aligned_cols=205 Identities=17% Similarity=0.132 Sum_probs=121.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccc----ccccCCcceEEEEEeCCCcCHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKA----VEDSGKFDVKAWVCVSDDFDVLS 217 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~----~~~~~~f~~~~wv~~s~~~~~~~ 217 (1277)
..+-+|+.+..+|.+.+...-.. .+....+-|.|.+|.|||+.+..|.+... .+.-..|+ .+.|+.-.-....+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 34668999999988877543222 13345899999999999999999987432 11111343 45566666667889
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc-----CceEEEEecCccc---ccHHhHHhhhcc-ccc-CCCCcEEEEEc
Q 000803 218 ISKALLESITSATCDLKTVDEVQVQLKKAVD-----GKRFLLVLDDVWN---EDYSLWVDLKAP-FLA-AAPNSKMIITT 287 (1277)
Q Consensus 218 ~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv~~---~~~~~~~~l~~~-l~~-~~~~s~iivTt 287 (1277)
+...|..++.+.... .....+.+..++. .+..++++|+++. ..+ +++-. |.+ ..++||++|.+
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q----dVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ----DVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH----HHHHHHhcCCcCCCCceEEEE
Confidence 999999998865432 3333344444442 4568888998732 111 22222 222 34688876654
Q ss_pred cc--c---------ccccccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHHhh
Q 000803 288 RN--S---------HVASTMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGL 356 (1277)
Q Consensus 288 r~--~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~~~ 356 (1277)
=- . .+...+| ...+...|.+.++-.++...+..+. +.-.....+-+|++|+.-.|-.-.|+.+.-+.
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 21 1 1222222 2346777888888777777666433 11122344555666666666666666655444
Q ss_pred h
Q 000803 357 L 357 (1277)
Q Consensus 357 L 357 (1277)
.
T Consensus 625 ~ 625 (767)
T KOG1514|consen 625 A 625 (767)
T ss_pred H
Confidence 3
No 200
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.50 E-value=0.01 Score=62.79 Aligned_cols=103 Identities=17% Similarity=0.211 Sum_probs=56.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
...+.++|.+|+|||+||.++++....+ -..++++++ .++...+-..... .....+.+ .+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~----g~~v~~it~------~~l~~~l~~~~~~---~~~~~~~~----l~~l~ 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLR----GKSVLIITV------ADIMSAMKDTFSN---SETSEEQL----LNDLS 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEH------HHHHHHHHHHHhh---ccccHHHH----HHHhc
Confidence 3478899999999999999999864322 124555543 3344443333211 11122222 22233
Q ss_pred CceEEEEecCcccccHHhHHh-hhccccc-C-CCCcEEEEEccc
Q 000803 249 GKRFLLVLDDVWNEDYSLWVD-LKAPFLA-A-APNSKMIITTRN 289 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~-l~~~l~~-~-~~~s~iivTtr~ 289 (1277)
+.=+||+||+......+|.. +...+.+ . ...-.+||||-.
T Consensus 162 -~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 162 -NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred -cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 34488889997765556653 2222222 1 224567777754
No 201
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.50 E-value=0.043 Score=65.95 Aligned_cols=179 Identities=18% Similarity=0.142 Sum_probs=92.1
Q ss_pred CccccchhhHHHHHHHHh---cccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH
Q 000803 142 PVVFGREEDKTKILEMVL---TDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV 215 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~ 215 (1277)
..++|.++.++++.+.+. .... ......+-+.++|++|+|||++|+.+++.... .| +.++.
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~----~~-----~~i~~---- 121 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV----PF-----FSISG---- 121 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC----Ce-----eeccH----
Confidence 467888777666554432 2110 00122345889999999999999999874321 22 22221
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc----------HHhHHh----hhcccc--cCCC
Q 000803 216 LSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED----------YSLWVD----LKAPFL--AAAP 279 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 279 (1277)
..+. ....+ .....+...+.......+.+|++|+++... ...+.. +...+. ....
T Consensus 122 ~~~~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFV----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHH----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111 11100 112233334444445567899999995421 011222 221111 1223
Q ss_pred CcEEEEEcccccccc-----ccCCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 280 NSKMIITTRNSHVAS-----TMGPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 280 ~s~iivTtr~~~v~~-----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
+-.||.||...+... ...-...+.++..+.++-.++|..+.-.... ... ....++++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCC
Confidence 445666665543211 1122356889989998888988877632211 111 12346777887743
No 202
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.031 Score=62.79 Aligned_cols=148 Identities=15% Similarity=0.210 Sum_probs=86.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..+.-+.+.|++|+|||+||..++... .|..+--++..+-... .+......+.......
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S------~FPFvKiiSpe~miG~---------------sEsaKc~~i~k~F~DA 594 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSS------DFPFVKIISPEDMIGL---------------SESAKCAHIKKIFEDA 594 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhc------CCCeEEEeChHHccCc---------------cHHHHHHHHHHHHHHh
Confidence 456778899999999999999997632 5655433321111000 0111223333444455
Q ss_pred hcCceEEEEecCcccccHHhHHhhhcc---------------cccCCCCcEEEEEccccccccccCCC----ceeecCCC
Q 000803 247 VDGKRFLLVLDDVWNEDYSLWVDLKAP---------------FLAAAPNSKMIITTRNSHVASTMGPI----DHYNLEHL 307 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~~~~~~~l~~~---------------l~~~~~~s~iivTtr~~~v~~~~~~~----~~~~l~~L 307 (1277)
.+..--.||+||+.. ..+|..+... .++.++.--|+-||....|...|+-. ..|.++.+
T Consensus 595 YkS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred hcCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 566778999999943 2455433322 23333333456677777888777532 46888888
Q ss_pred CH-HHHHHHHHHhh-cCCCCCCchhhHHHHHHHHHhhc
Q 000803 308 LD-DDCWSIFKTHA-FEGRDHNALEISESFRKKVVGKC 343 (1277)
Q Consensus 308 ~~-~~~~~Lf~~~~-~~~~~~~~~~~~~~~~~~i~~~c 343 (1277)
+. ++..+.++..- |. +...+.++++...+|
T Consensus 673 ~~~~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 673 TTGEQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred CchHHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 77 66777766543 31 233455566666666
No 203
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.48 E-value=0.031 Score=71.20 Aligned_cols=138 Identities=18% Similarity=0.183 Sum_probs=74.6
Q ss_pred CccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++..- .. -...+.++++.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~-~~---~~~~i~id~se~~~-~~- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF-DS---DDAMVRIDMSEFME-KH- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh-cC---CCcEEEEEhHHhhh-hh-
Confidence 4688999999888888764321 1112235788999999999999999986321 11 11234444433211 11
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC-ceEEEEecCcccccHHhHHhhhcccccC-----------CCCcEEEEE
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAVDG-KRFLLVLDDVWNEDYSLWVDLKAPFLAA-----------APNSKMIIT 286 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivT 286 (1277)
....+.+........+. ...+.+.++. ..-+|+||++...+...+..+...+..+ -.++-||+|
T Consensus 642 ---~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 642 ---SVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred ---hHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11122221111111111 1112222222 2369999999877777777776655332 123347778
Q ss_pred ccc
Q 000803 287 TRN 289 (1277)
Q Consensus 287 tr~ 289 (1277)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 765
No 204
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.47 E-value=0.012 Score=70.61 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=35.0
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.++|.+..++.+...+... ...-+.|+|..|+|||++|+.+++.
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999888776432 2245679999999999999999753
No 205
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.46 E-value=0.05 Score=60.66 Aligned_cols=93 Identities=14% Similarity=0.219 Sum_probs=64.0
Q ss_pred CceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-ccccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCC
Q 000803 249 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SHVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDH 326 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~ 326 (1277)
+++=++|+|+++..+...++.+...+-.-.+++.+|.+|.+ ..+...+ +....+.+.+++.++..+.+.... ..
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~~- 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---VA- 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---CC-
Confidence 45568889999998888899988888766667766665555 4444322 223678999999999998887642 11
Q ss_pred CchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 327 NALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 327 ~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+ ...++..++|.|..+..+
T Consensus 207 ---~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 ---D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ---h-----HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999755443
No 206
>PRK07261 topology modulation protein; Provisional
Probab=96.43 E-value=0.0065 Score=61.07 Aligned_cols=23 Identities=43% Similarity=0.671 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999987643
No 207
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.43 E-value=0.011 Score=65.17 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=70.3
Q ss_pred cchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHH
Q 000803 146 GREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLES 225 (1277)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~ 225 (1277)
+|........+++..-... ...+-+.++|..|+|||.||.++++....+ .+ .+.++++. .++.++...
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~~---g~-~v~~~~~~------~l~~~lk~~ 202 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAKK---GV-SSTLLHFP------EFIRELKNS 202 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHHc---CC-CEEEEEHH------HHHHHHHHH
Confidence 4444445455555432111 234568999999999999999999865422 23 35566543 444555444
Q ss_pred hcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHh--hhccccc-C-CCCcEEEEEccc
Q 000803 226 ITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVD--LKAPFLA-A-APNSKMIITTRN 289 (1277)
Q Consensus 226 l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l~~-~-~~~s~iivTtr~ 289 (1277)
.... ...+ .+.. + .+-=||||||+..+....|.. +...+.. . ..+-.+|+||--
T Consensus 203 ~~~~-----~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 203 ISDG-----SVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred HhcC-----cHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3211 1222 2222 2 245589999998776677864 4444432 2 345678888753
No 208
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.42 E-value=0.015 Score=74.33 Aligned_cols=137 Identities=15% Similarity=0.180 Sum_probs=77.4
Q ss_pred CccccchhhHHHHHHHHhccccc---CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAA---DHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+...... .-...+.++.+.-.....+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~----~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD----DEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC----CCCcEEEEechhhcccchH
Confidence 46899999999999988653211 1122457889999999999999999764211 1122344444432221111
Q ss_pred HHHHHHHhcCCCC--CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccC-----------CCCcEEEE
Q 000803 219 SKALLESITSATC--DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-----------APNSKMII 285 (1277)
Q Consensus 219 ~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iiv 285 (1277)
...++.... .......+...+++ ....+|+||++...+...+..+...+-.+ -.++-||+
T Consensus 641 ----~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~ 713 (852)
T TIGR03346 641 ----ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIM 713 (852)
T ss_pred ----HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEE
Confidence 111221111 11111223333332 23459999999988888888777666432 13344777
Q ss_pred Eccc
Q 000803 286 TTRN 289 (1277)
Q Consensus 286 Ttr~ 289 (1277)
||..
T Consensus 714 TSn~ 717 (852)
T TIGR03346 714 TSNL 717 (852)
T ss_pred eCCc
Confidence 7654
No 209
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.39 E-value=0.0074 Score=61.44 Aligned_cols=129 Identities=18% Similarity=0.227 Sum_probs=62.5
Q ss_pred chhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeC----CCc--CHHHH--
Q 000803 147 REEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVS----DDF--DVLSI-- 218 (1277)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s----~~~--~~~~~-- 218 (1277)
+..+-...++.|.. ..++.+.|++|.|||.||.+..-+.-.. +.|+.++++.-. +.. -+-..
T Consensus 5 ~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~--g~~~kiii~Rp~v~~~~~lGflpG~~~e 74 (205)
T PF02562_consen 5 KNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKE--GEYDKIIITRPPVEAGEDLGFLPGDLEE 74 (205)
T ss_dssp -SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHT--TS-SEEEEEE-S--TT----SS------
T ss_pred CCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHh--CCCcEEEEEecCCCCccccccCCCCHHH
Confidence 44455556666652 2489999999999999998877654322 478877776421 111 00000
Q ss_pred -----HHHHHHHhcCCCCCCCcHHHHHHHH------HHhhcCc---eEEEEecCcccccHHhHHhhhcccccCCCCcEEE
Q 000803 219 -----SKALLESITSATCDLKTVDEVQVQL------KKAVDGK---RFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMI 284 (1277)
Q Consensus 219 -----~~~il~~l~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ii 284 (1277)
..-+...+..-. .....+.+.+.- -.+++|+ ...||+|.+.+....++..+... .+.|||||
T Consensus 75 K~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii 150 (205)
T PF02562_consen 75 KMEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKII 150 (205)
T ss_dssp ---TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEE
T ss_pred HHHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEE
Confidence 111111111110 111222222110 0245564 46999999998877676666544 46799999
Q ss_pred EEccc
Q 000803 285 ITTRN 289 (1277)
Q Consensus 285 vTtr~ 289 (1277)
++--.
T Consensus 151 ~~GD~ 155 (205)
T PF02562_consen 151 ITGDP 155 (205)
T ss_dssp EEE--
T ss_pred EecCc
Confidence 98543
No 210
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.37 E-value=0.012 Score=74.63 Aligned_cols=137 Identities=16% Similarity=0.135 Sum_probs=76.2
Q ss_pred CccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..++.+.+.+..... ..+....++.++|+.|+|||.+|+.+....- . .....+-++++.-.+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~--~--~~~~~~~~dmse~~~~--- 638 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY--G--GEQNLITINMSEFQEA--- 638 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh--C--CCcceEEEeHHHhhhh---
Confidence 4689999999999988854311 1113346889999999999999998865321 1 1112222333221111
Q ss_pred HHHHHHHhcCCCC--CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCC-----------CCcEEEE
Q 000803 219 SKALLESITSATC--DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAA-----------PNSKMII 285 (1277)
Q Consensus 219 ~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iiv 285 (1277)
+.+..-++.... .......+.+.+++ ...-+|+||++...+...++.+...+..+. .++-||+
T Consensus 639 -~~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 639 -HTVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred -hhhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 111111221111 11111223334433 456799999998877777777665554332 4556666
Q ss_pred Eccc
Q 000803 286 TTRN 289 (1277)
Q Consensus 286 Ttr~ 289 (1277)
||..
T Consensus 715 TSNl 718 (852)
T TIGR03345 715 TSNA 718 (852)
T ss_pred eCCC
Confidence 6653
No 211
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.37 E-value=0.0048 Score=68.04 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=47.5
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccc---cccCCcceEEE
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAV---EDSGKFDVKAW 206 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~---~~~~~f~~~~w 206 (1277)
.++|.++.++++++++.......+..-+++.++|++|+||||||+.+.+.... ...|.|-..-|
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 69999999999999997654322244689999999999999999999875432 12234555556
No 212
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.37 E-value=0.013 Score=67.31 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 20 ~~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 468999999999998887653 4789999999999999999763
No 213
>PRK06526 transposase; Provisional
Probab=96.33 E-value=0.0047 Score=66.08 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.-+.++|++|+|||+||..+.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHH
Confidence 458999999999999999987643
No 214
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0091 Score=72.23 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=74.5
Q ss_pred CccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCc---ceEEEEEeCCCcCH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKF---DVKAWVCVSDDFDV 215 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f---~~~~wv~~s~~~~~ 215 (1277)
..++|.+..+..+.+.+..... ..+....+...+|+.|||||.||++++.. -| +..+-++.|+-...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-------Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-------LFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-------hcCCCccceeechHHHHHH
Confidence 4688999999999888765432 11244578888999999999999998753 23 33444444442211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceE-EEEecCcccccHHhHHhhhccccc
Q 000803 216 LSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRF-LLVLDDVWNEDYSLWVDLKAPFLA 276 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 276 (1277)
+.+-+-++.+. .--..++ .-.+-+..+.++| +|.||.|...+.+..+.+...+-+
T Consensus 564 ----HsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 564 ----HSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred ----HHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 12222333222 1111111 2234445556776 888999998888777777766644
No 215
>PRK12377 putative replication protein; Provisional
Probab=96.33 E-value=0.011 Score=62.83 Aligned_cols=101 Identities=23% Similarity=0.141 Sum_probs=55.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
..+.++|..|+|||+||.++++.... ....++++++. ++...+-..... ....... ++. + .
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~----~g~~v~~i~~~------~l~~~l~~~~~~----~~~~~~~---l~~-l-~ 162 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLA----KGRSVIVVTVP------DVMSRLHESYDN----GQSGEKF---LQE-L-C 162 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH----cCCCeEEEEHH------HHHHHHHHHHhc----cchHHHH---HHH-h-c
Confidence 56899999999999999999986532 22235666643 333333333211 1111222 222 2 3
Q ss_pred ceEEEEecCcccccHHhHHh--hhcccccC-CCCcEEEEEccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVD--LKAPFLAA-APNSKMIITTRN 289 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~~s~iivTtr~ 289 (1277)
+-=||||||+.......|.. +...+... .++--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55699999995543344532 22222221 223456777753
No 216
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.31 E-value=0.025 Score=58.36 Aligned_cols=203 Identities=13% Similarity=0.202 Sum_probs=110.4
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc----cccccCCcceEEEEEeCCC-------
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK----AVEDSGKFDVKAWVCVSDD------- 212 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~----~~~~~~~f~~~~wv~~s~~------- 212 (1277)
+.++++....+...... +..+-.-++|+.|.||-|.+..+.++. ..+- .-+...|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gvekl--ki~~~t~~tpS~kklEistv 86 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKL--KIETRTFTTPSKKKLEISTV 86 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchhe--eeeeEEEecCCCceEEEEEe
Confidence 55666666666665432 446788999999999998876554421 1111 2234445443322
Q ss_pred ---c-----------CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC-ceE-EEEecCcccccHHhHHhhhccccc
Q 000803 213 ---F-----------DVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG-KRF-LLVLDDVWNEDYSLWVDLKAPFLA 276 (1277)
Q Consensus 213 ---~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~-kr~-LlVlDdv~~~~~~~~~~l~~~l~~ 276 (1277)
+ ..+.+.++++.++..... + ..++ +.| ++|+-.+++-..+....+++-.-.
T Consensus 87 sS~yHlEitPSDaG~~DRvViQellKevAQt~q-----------i--e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 87 SSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----------I--ETQGQRPFKVVVINEADELTRDAQHALRRTMEK 153 (351)
T ss_pred cccceEEeChhhcCcccHHHHHHHHHHHHhhcc-----------h--hhccccceEEEEEechHhhhHHHHHHHHHHHHH
Confidence 1 122333333333322110 0 0112 233 566666655444555566665555
Q ss_pred CCCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHHH
Q 000803 277 AAPNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLG 354 (1277)
Q Consensus 277 ~~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~~ 354 (1277)
-.+.+|+|+..-+. .+.... ...-.+++...+++|-...+++.+-... .....+++.+|+++++|.---...+-
T Consensus 154 Ys~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~----l~lp~~~l~rIa~kS~~nLRrAllml 229 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEG----LQLPKELLKRIAEKSNRNLRRALLML 229 (351)
T ss_pred HhcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhc----ccCcHHHHHHHHHHhcccHHHHHHHH
Confidence 56788888764332 111111 1113478889999999998887763221 12236788999999998754332222
Q ss_pred hhhcCC-----------ChhhHHHHHhh
Q 000803 355 GLLRTT-----------TYDMWDDILDS 371 (1277)
Q Consensus 355 ~~L~~~-----------~~~~w~~~l~~ 371 (1277)
..++-+ ..-+|+-.+.+
T Consensus 230 E~~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 230 EAVRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HHHHhccccccccCCCCCCccHHHHHHH
Confidence 222111 35678877664
No 217
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.31 E-value=0.057 Score=61.46 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=34.0
Q ss_pred hhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc
Q 000803 148 EEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE 196 (1277)
Q Consensus 148 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~ 196 (1277)
+.-.+.+.+.+..... ....+|+|.|.-|+|||++.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445667777765432 456899999999999999999997755443
No 218
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.28 E-value=0.15 Score=57.31 Aligned_cols=206 Identities=13% Similarity=0.174 Sum_probs=120.2
Q ss_pred chhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHH-HHHhccccccccCCcceEEEEEeCCC---cCHHHHHHHH
Q 000803 147 REEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLA-REVYNDKAVEDSGKFDVKAWVCVSDD---FDVLSISKAL 222 (1277)
Q Consensus 147 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~~f~~~~wv~~s~~---~~~~~~~~~i 222 (1277)
|.+..++|..||.... -.+|.|.|+-|.||+.|+ .++..+.+ .+..+++.+- -+-......+
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~--------~vL~IDC~~i~~ar~D~~~I~~l 66 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK--------NVLVIDCDQIVKARGDAAFIKNL 66 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC--------CEEEEEChHhhhccChHHHHHHH
Confidence 6678899999998753 269999999999999999 77766432 2455554321 1233334444
Q ss_pred HHHhc-----------------------CCCCC-CCcH-HHHHH-------HHHH-------------------hhc---
Q 000803 223 LESIT-----------------------SATCD-LKTV-DEVQV-------QLKK-------------------AVD--- 248 (1277)
Q Consensus 223 l~~l~-----------------------~~~~~-~~~~-~~~~~-------~l~~-------------------~l~--- 248 (1277)
+.++| ++..+ ..+. .++.. .|++ +++
T Consensus 67 A~qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hP 146 (431)
T PF10443_consen 67 ASQVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHP 146 (431)
T ss_pred HHhcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCC
Confidence 44433 22211 1111 12221 1221 111
Q ss_pred CceEEEEecCccccc---------HHhHHhhhcccccCCCCcEEEEEcccccccccc------CCCceeecCCCCHHHHH
Q 000803 249 GKRFLLVLDDVWNED---------YSLWVDLKAPFLAAAPNSKMIITTRNSHVASTM------GPIDHYNLEHLLDDDCW 313 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~~------~~~~~~~l~~L~~~~~~ 313 (1277)
.+|=+||+|++-... ..+|.... -..+=.+||++|-+......+ ...+.+.+.-.+.+.|.
T Consensus 147 e~~PVVVIdnF~~k~~~~~~iy~~laeWAa~L----v~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 147 ERRPVVVIDNFLHKAEENDFIYDKLAEWAASL----VQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred ccCCEEEEcchhccCcccchHHHHHHHHHHHH----HhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 135689999984321 12343322 123456899998876554432 23356889999999999
Q ss_pred HHHHHhhcCCCCC------------Cch----hhHHHHHHHHHhhcCCchHHHHHHHhhhcCC-C-hhhHHHHHh
Q 000803 314 SIFKTHAFEGRDH------------NAL----EISESFRKKVVGKCGGLPLAAKTLGGLLRTT-T-YDMWDDILD 370 (1277)
Q Consensus 314 ~Lf~~~~~~~~~~------------~~~----~~~~~~~~~i~~~c~glPLai~~~~~~L~~~-~-~~~w~~~l~ 370 (1277)
++...+.-..... ... ....+.....++..||=-.-+..+++.++.. + .+....+.+
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9998887532110 000 1233344567888999999999999988876 3 333444443
No 219
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.22 E-value=0.026 Score=64.32 Aligned_cols=147 Identities=16% Similarity=0.172 Sum_probs=84.6
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccc-----------------cCCcceEE
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVED-----------------SGKFDVKA 205 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~-----------------~~~f~~~~ 205 (1277)
.++|-+....++..+..... .....+-++|+.|+||||+|..+.+..-... .+....+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677777888888876442 1223589999999999999998877442111 00112333
Q ss_pred EEEeCCCcC---HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCCCCcE
Q 000803 206 WVCVSDDFD---VLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSK 282 (1277)
Q Consensus 206 wv~~s~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~ 282 (1277)
.++.++... ..+..+++.+...... ..+++-++++|+++....+.-..+...+-.....++
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~----------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESP----------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCC----------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 444443332 1222222222222111 035678999999988776666667666666667888
Q ss_pred EEEEcccc-cccccc-CCCceeecCCCCH
Q 000803 283 MIITTRNS-HVASTM-GPIDHYNLEHLLD 309 (1277)
Q Consensus 283 iivTtr~~-~v~~~~-~~~~~~~l~~L~~ 309 (1277)
+|++|... .+...+ .....+++.+.+.
T Consensus 142 ~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 142 FILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEcCChhhccchhhhcceeeecCCchH
Confidence 88888743 333222 1123466666333
No 220
>PRK06921 hypothetical protein; Provisional
Probab=96.19 E-value=0.014 Score=63.18 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=27.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV 209 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~ 209 (1277)
..-+.++|..|+|||+||.++++....+. -..++|++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~---g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKK---GVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhc---CceEEEEEH
Confidence 35689999999999999999988543221 234567664
No 221
>PRK09183 transposase/IS protein; Provisional
Probab=96.17 E-value=0.012 Score=63.44 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..+.|+|++|+|||+||..+.+.
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46779999999999999999764
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.14 E-value=0.024 Score=72.35 Aligned_cols=136 Identities=15% Similarity=0.170 Sum_probs=75.7
Q ss_pred CccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..++|.+..++.+.+.+..... ..+.....+.++|+.|+|||+||+.+++..-- .-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~----~~~~~~~~d~s~~~~~~~~ 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFG----SEDAMIRLDMSEYMEKHTV 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcC----CccceEEEEchhccccccH
Confidence 4688999999999888764321 11122356778999999999999998763210 0122334444432221111
Q ss_pred HHHHHHHhcCCCC--CCCcHHHHHHHHHHhhcCce-EEEEecCcccccHHhHHhhhcccccC-----------CCCcEEE
Q 000803 219 SKALLESITSATC--DLKTVDEVQVQLKKAVDGKR-FLLVLDDVWNEDYSLWVDLKAPFLAA-----------APNSKMI 284 (1277)
Q Consensus 219 ~~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~ii 284 (1277)
..-++.+.. .......+ .+.++.++ .+++||++...+...+..+...+-.+ -.++-||
T Consensus 585 ----~~l~g~~~gyvg~~~~~~l----~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I 656 (821)
T CHL00095 585 ----SKLIGSPPGYVGYNEGGQL----TEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLII 656 (821)
T ss_pred ----HHhcCCCCcccCcCccchH----HHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEE
Confidence 111221110 11111223 33343444 58999999888877777777665432 1345566
Q ss_pred EEccc
Q 000803 285 ITTRN 289 (1277)
Q Consensus 285 vTtr~ 289 (1277)
+||..
T Consensus 657 ~Tsn~ 661 (821)
T CHL00095 657 MTSNL 661 (821)
T ss_pred EeCCc
Confidence 66654
No 223
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.10 E-value=0.00079 Score=81.90 Aligned_cols=236 Identities=19% Similarity=0.247 Sum_probs=114.0
Q ss_pred ccccccceeEeeccCCccccc---CCCCCCcccceeeccccccceeccCC-CCCcccc----CcCccccccCceeeecCC
Q 000803 976 DNNSRLESLYIGYCGSLKFVT---KGKLPSSLKSLQIENLTLESLKIRDC-PQLTCLS----SGIHLLEALEDLHIRNCP 1047 (1277)
Q Consensus 976 ~~l~~L~~L~l~~c~~l~~~~---~~~~~~sL~~L~l~~~~L~~L~l~~~-~~l~~l~----~~~~~l~~L~~L~l~~c~ 1047 (1277)
..+++|+.|.+..|..+.... ...... .|+.|++++| ......+ .....+++|+.|++++|.
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~----------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCP----------NLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCc----------hhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 457889999998887665321 111112 3555555542 2211111 122244667777777776
Q ss_pred Ccccc-----ccccccccEEEecccCCccccccc---CccCcccEEEeeccccccc--CcCCCCCCCCcCEEeccCCCCc
Q 000803 1048 KLESI-----PKGLHKLRSIYIKKCPSLVSLAEK---GLPNTISHVTISYCEKLDA--LPNGMHKLQSLQYLKIKECPSI 1117 (1277)
Q Consensus 1048 ~l~~~-----p~~l~~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~l~~--lp~~l~~l~~L~~L~l~~c~~l 1117 (1277)
.+... ....++|+.|.+.+|..+++.... ...++|++|++++|..+.. +.....++++|+.|.+..+..
T Consensus 255 ~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~- 333 (482)
T KOG1947|consen 255 LVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG- 333 (482)
T ss_pred ccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-
Confidence 43322 122446777776666654433221 1223566666666655421 111122344444443333221
Q ss_pred ccccCCCCCCCCceEEEccccCccch--hhhhhhcccccCCcccccccccCCCccCchhhhhccCCcccceeeecccccc
Q 000803 1118 LSFSEEGFPTNLKLIRIGGGVDAKMY--KAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKL 1195 (1277)
Q Consensus 1118 ~~l~~~~~~~~L~~L~l~~~~~~~~l--~~~~~~~~~~l~~L~~L~l~~~~~l~~lp~~~~~~~~~~~L~~L~l~~~~~l 1195 (1277)
...++.+.+.+ |... ..........++.|+.+.+.+|. ..... ..+.+.+|+++
T Consensus 334 --------c~~l~~~~l~~---~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~------------~~~~l~gc~~l 389 (482)
T KOG1947|consen 334 --------CPSLTDLSLSG---LLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG------------LELSLRGCPNL 389 (482)
T ss_pred --------CccHHHHHHHH---hhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc------------hHHHhcCCccc
Confidence 01111111111 1111 11222234556666666666654 22211 14567778777
Q ss_pred -cccCccCCCCCCCCCceeccCCCCCCCCCCCCC---CCccceeeccCChhhHHHh
Q 000803 1196 -KYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGL---PSSLLSLEIKNCPKLRKQC 1247 (1277)
Q Consensus 1196 -~~l~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~---~~~L~~L~i~~c~~L~~~~ 1247 (1277)
..+.. -.....+|+.|+++.|...+.--.... ..++..+++.+|+......
T Consensus 390 ~~~l~~-~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 390 TESLEL-RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred chHHHH-HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchh
Confidence 33331 123334489999999876554321111 4567888888888766543
No 224
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.05 E-value=0.011 Score=58.93 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=61.6
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..+||-++-++.+--.-.+ ++.+-+.|.||+|+||||-+..+++..--.. .-+.+.-.++|
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~--~ke~vLELNAS----------- 87 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLGDS--YKEAVLELNAS----------- 87 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhChh--hhhHhhhccCc-----------
Confidence 4689988888876544332 5567889999999999998877765321110 11222222222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHHhhc-------CceEEEEecCcccccHHhHHhhhc
Q 000803 222 LLESITSATCDLKTVDEVQVQLKKAVD-------GKRFLLVLDDVWNEDYSLWVDLKA 272 (1277)
Q Consensus 222 il~~l~~~~~~~~~~~~~~~~l~~~l~-------~kr~LlVlDdv~~~~~~~~~~l~~ 272 (1277)
+....+.+...++.+.+ ++--.||||..++........+++
T Consensus 88 ----------deRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRR 135 (333)
T KOG0991|consen 88 ----------DERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRR 135 (333)
T ss_pred ----------cccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHH
Confidence 33445555555555443 344578999998865544444443
No 225
>PRK04132 replication factor C small subunit; Provisional
Probab=96.02 E-value=0.095 Score=65.22 Aligned_cols=154 Identities=13% Similarity=0.029 Sum_probs=94.3
Q ss_pred cCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEe
Q 000803 177 MGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVL 256 (1277)
Q Consensus 177 ~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 256 (1277)
+.|+||||+|..++++.--.. .-..++-+++++...... .++++..+..... .-..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~--~~~~~lElNASd~rgid~-IR~iIk~~a~~~~--------------~~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELFGEN--WRHNFLELNASDERGINV-IREKVKEFARTKP--------------IGGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhhccc--ccCeEEEEeCCCcccHHH-HHHHHHHHHhcCC--------------cCCCCCEEEEE
Confidence 788999999999988531110 112356677776544443 3333333221110 00124579999
Q ss_pred cCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHH
Q 000803 257 DDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISES 334 (1277)
Q Consensus 257 Ddv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~ 334 (1277)
|+++......+..++..+-.....+++|.+|.+. .+.... .....+.+++++.++-...+...+-...- ...++
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi----~i~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL----ELTEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC----CCCHH
Confidence 9999888777888877776555667777766553 333222 22357999999999988877765532111 11245
Q ss_pred HHHHHHhhcCCchHHHH
Q 000803 335 FRKKVVGKCGGLPLAAK 351 (1277)
Q Consensus 335 ~~~~i~~~c~glPLai~ 351 (1277)
....|++.++|-+-.+.
T Consensus 713 ~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 713 GLQAILYIAEGDMRRAI 729 (846)
T ss_pred HHHHHHHHcCCCHHHHH
Confidence 66789999999885443
No 226
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.01 E-value=0.061 Score=63.27 Aligned_cols=180 Identities=13% Similarity=0.052 Sum_probs=88.0
Q ss_pred ccccchhhHHHHHHHHh---cc-cccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 143 VVFGREEDKTKILEMVL---TD-TAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~---~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
.+.|.+..++.+.+... .. ...+-...+-|-++|++|+|||.+|+.+++.... .| +-+..+. +
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~----~~---~~l~~~~------l 295 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL----PL---LRLDVGK------L 295 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC----CE---EEEEhHH------h
Confidence 56676665555543221 10 0001123467889999999999999999885422 22 1122111 1
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccH--------HhHHh----hhcccccCCCCcEEEEE
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDY--------SLWVD----LKAPFLAAAPNSKMIIT 286 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------~~~~~----l~~~l~~~~~~s~iivT 286 (1277)
. . ... ......+.+.++..-...+++|++|+++..-. ..-.. +...+.....+--||.|
T Consensus 296 ~----~----~~v-Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 F----G----GIV-GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred c----c----ccc-ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0 0 000 01112222223322235789999999953110 00011 11111122334446667
Q ss_pred cccccc-cccc----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 287 TRNSHV-ASTM----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 287 tr~~~v-~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
|...+. -..+ .-...+.++.-+.++-.++|..+.......... ......+++.+.|+-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~---~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWK---KYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCccc---ccCHHHHHhhcCCCC
Confidence 755432 1111 223568888889999999998877432211100 111245666666653
No 227
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.061 Score=59.90 Aligned_cols=89 Identities=13% Similarity=0.164 Sum_probs=49.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD--VLSISKALLESITSATCDLKTVDEVQVQLKK 245 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 245 (1277)
..++|+++|++|+||||++..++.....+ .+ .+..++. +.+. ..+-++...+.++.+.....+.+++.+.+..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~---Gk-kVglI~a-Dt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~ 314 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK---KK-TVGFITT-DHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY 314 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc---CC-cEEEEec-CCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence 45899999999999999999997643211 22 3444443 3333 2222333333333332223455566655554
Q ss_pred hhcC-ceEEEEecCccc
Q 000803 246 AVDG-KRFLLVLDDVWN 261 (1277)
Q Consensus 246 ~l~~-kr~LlVlDdv~~ 261 (1277)
.-.. +.=+|++|-...
T Consensus 315 lk~~~~~DvVLIDTaGR 331 (436)
T PRK11889 315 FKEEARVDYILIDTAGK 331 (436)
T ss_pred HHhccCCCEEEEeCccc
Confidence 4321 234677887754
No 228
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.96 E-value=0.0034 Score=38.09 Aligned_cols=21 Identities=33% Similarity=0.621 Sum_probs=11.7
Q ss_pred ccceeeccCCccccccccccc
Q 000803 577 LLRYLNLADTDIRSLPESSCS 597 (1277)
Q Consensus 577 ~Lr~L~L~~~~i~~lp~~i~~ 597 (1277)
+|++|+|++|.++.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 355666666665555555443
No 229
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.91 E-value=0.0081 Score=66.76 Aligned_cols=102 Identities=22% Similarity=0.197 Sum_probs=54.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.++|..|+|||+||..+++....+ . ..++++++.+ ++..+...-... ..+.... +. .+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~---g-~~V~y~t~~~------l~~~l~~~~~~~---~~~~~~~---~~-~l~- 245 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDR---G-KSVIYRTADE------LIEILREIRFNN---DKELEEV---YD-LLI- 245 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHC---C-CeEEEEEHHH------HHHHHHHHHhcc---chhHHHH---HH-Hhc-
Confidence 568999999999999999998854322 2 2466766433 232222211110 1111111 22 222
Q ss_pred ceEEEEecCcccccHHhHHh--hhcccccC-CCCcEEEEEccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVD--LKAPFLAA-APNSKMIITTRN 289 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~~s~iivTtr~ 289 (1277)
+-=||||||+.......|.. +...+... ..+-.+||||..
T Consensus 246 ~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 246 NCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred cCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 22489999996654344432 22222221 235568888864
No 230
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.91 E-value=0.0057 Score=57.76 Aligned_cols=22 Identities=50% Similarity=0.635 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+|+|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 231
>PRK04296 thymidine kinase; Provisional
Probab=95.88 E-value=0.017 Score=59.27 Aligned_cols=114 Identities=11% Similarity=-0.034 Sum_probs=61.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCC--CCcHHHHHHHHHHhh
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCD--LKTVDEVQVQLKKAV 247 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~--~~~~~~~~~~l~~~l 247 (1277)
.++.|+|..|.||||+|..++..... +-..++.+. ..++.......++..++..... ....+++.+.+++ .
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~----~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~ 75 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEE----RGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-E 75 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHH----cCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence 57889999999999999888764322 222333332 1112122222344444322111 2234455555555 3
Q ss_pred cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccc
Q 000803 248 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHV 292 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 292 (1277)
.++.-+||+|.+.--+.++..++...+ ...|..||+|.++...
T Consensus 76 ~~~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 76 GEKIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCccc
Confidence 334558999999653222222233222 2357899999888543
No 232
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.85 E-value=0.028 Score=61.69 Aligned_cols=87 Identities=20% Similarity=0.263 Sum_probs=47.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD--VLSISKALLESITSATCDLKTVDEVQVQLKK 245 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 245 (1277)
..++++|+|++|+||||++..++.....+. +.+ .+..|+... +. ....+....+.++.......+..++...+.+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~-g~~-~V~li~~D~-~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEH-GNK-KVALITTDT-YRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHc-CCC-eEEEEECCc-cchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 457999999999999999998876443221 112 345555432 22 2222333333333332223344555555554
Q ss_pred hhcCceEEEEecCc
Q 000803 246 AVDGKRFLLVLDDV 259 (1277)
Q Consensus 246 ~l~~kr~LlVlDdv 259 (1277)
. .+ .=+|++|..
T Consensus 270 ~-~~-~d~vliDt~ 281 (282)
T TIGR03499 270 L-RD-KDLILIDTA 281 (282)
T ss_pred c-cC-CCEEEEeCC
Confidence 3 33 347777754
No 233
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.84 E-value=0.033 Score=56.37 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=65.6
Q ss_pred CCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 139 PTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 139 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
++-..++|-+...+.+++--..-... ....-|-+||.-|.|||.|++++.+....+. -. -|.|.+.
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G--~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g----lr--LVEV~k~------ 122 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEG--LPANNVLLWGARGTGKSSLVKALLNEYADEG----LR--LVEVDKE------ 122 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcC--CcccceEEecCCCCChHHHHHHHHHHHHhcC----Ce--EEEEcHH------
Confidence 34457899999988887643221110 2234578999999999999999988554332 11 2333321
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccc-cHHhHHhhhccccc
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA 276 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~ 276 (1277)
+..+...+.+.++. ..+||.|..||..-+ ....+..++..+-.
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG 166 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEG 166 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcC
Confidence 11223333344432 368999999999433 23456666666644
No 234
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.83 E-value=0.0045 Score=60.13 Aligned_cols=87 Identities=23% Similarity=0.141 Sum_probs=46.8
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCce
Q 000803 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKR 251 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr 251 (1277)
|.++|.+|+|||+||+.++.... ....-+.++...+..++....--. ... .......+...+ .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~-------~~~~~i~~~~~~~~~dl~g~~~~~--~~~-~~~~~~~l~~a~-----~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG-------RPVIRINCSSDTTEEDLIGSYDPS--NGQ-FEFKDGPLVRAM-----RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT-------CEEEEEE-TTTSTHHHHHCEEET---TTT-TCEEE-CCCTTH-----HEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhh-------cceEEEEeccccccccceeeeeec--ccc-cccccccccccc-----cce
Confidence 67999999999999999987431 123445677776766554321111 000 000000000011 178
Q ss_pred EEEEecCcccccHHhHHhhhcc
Q 000803 252 FLLVLDDVWNEDYSLWVDLKAP 273 (1277)
Q Consensus 252 ~LlVlDdv~~~~~~~~~~l~~~ 273 (1277)
.++|||++.......+..+...
T Consensus 67 ~il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHH
T ss_pred eEEEECCcccCCHHHHHHHHHH
Confidence 9999999987655545554433
No 235
>PRK06696 uridine kinase; Validated
Probab=95.79 E-value=0.011 Score=62.49 Aligned_cols=45 Identities=27% Similarity=0.303 Sum_probs=35.7
Q ss_pred cchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 146 GREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 146 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.+-+++|.+.+..... +...+|+|.|.+|+||||||+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~l 46 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEEI 46 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 366777888888765332 567899999999999999999998743
No 236
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.79 E-value=0.0051 Score=62.83 Aligned_cols=84 Identities=23% Similarity=0.249 Sum_probs=52.4
Q ss_pred CCCeeeEEecCCCCCCC-----CCcCCCCCCccceeeccCCcc----ccccc-------cccccccCcEEEecCCcCccc
Q 000803 551 KFKKLRLLSLQGYYIGE-----LPIPFEDLRLLRYLNLADTDI----RSLPE-------SSCSLLNLEILILRNCSSLIK 614 (1277)
Q Consensus 551 ~l~~Lr~L~L~~~~i~~-----lp~~~~~l~~Lr~L~L~~~~i----~~lp~-------~i~~L~~L~~L~L~~~~~l~~ 614 (1277)
.+..+..++|+||.|+. +...|.+-++|+.-+++.-.. .++|+ .+-++++|++.+|+.|..-..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 46788899999998743 455677778888888876421 13343 335566777777776543334
Q ss_pred cchh----hccccCcCeeeecCcc
Q 000803 615 LPSK----IRRLINLCHLDIRGAI 634 (1277)
Q Consensus 615 lp~~----i~~L~~L~~L~l~~~~ 634 (1277)
.|+. |.+-+.|.||.+++|.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC
Confidence 4443 3444566666666654
No 237
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.78 E-value=0.023 Score=66.53 Aligned_cols=77 Identities=18% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
+.-+++-++|++|+||||||.-++++. .| .++=|++|+.-....+-..|...+.......
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa------GY-sVvEINASDeRt~~~v~~kI~~avq~~s~l~------------- 383 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA------GY-SVVEINASDERTAPMVKEKIENAVQNHSVLD------------- 383 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc------Cc-eEEEecccccccHHHHHHHHHHHHhhccccc-------------
Confidence 567899999999999999999998753 33 4677888888777777666665554322110
Q ss_pred hcCceEEEEecCccccc
Q 000803 247 VDGKRFLLVLDDVWNED 263 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~ 263 (1277)
..+++.-+|+|.++-..
T Consensus 384 adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 384 ADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cCCCcceEEEecccCCc
Confidence 01577888999987654
No 238
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.77 E-value=0.034 Score=59.24 Aligned_cols=46 Identities=15% Similarity=0.141 Sum_probs=34.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
.-.++.|+|.+|+|||++|.+++..... .-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~----~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAK----NGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEECC-CCCHHHH
Confidence 3479999999999999999998764422 23568899877 5555443
No 239
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.75 E-value=0.029 Score=58.96 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=35.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
+.-.++-|+|.+|+|||++|.+++.... . .-..++|++... +...++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~--~--~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAA--R--QGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--h--CCCeEEEEECCC-CCHHHHHH
Confidence 3458999999999999999999876432 1 335789999875 55554443
No 240
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.75 E-value=0.038 Score=55.06 Aligned_cols=46 Identities=24% Similarity=0.393 Sum_probs=32.9
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+||....+.++++.+..... .. .-|.|+|..|+||+.+|+.+++..
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHhh
Confidence 47888888888887765432 22 345699999999999999998843
No 241
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.72 E-value=0.1 Score=55.77 Aligned_cols=172 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHH-HHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVL-SISKA 221 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~-~~~~~ 221 (1277)
.++|-.++..++-.++...... +...-+.|+|+.|.|||+|...+..+. +. .-+..+-|........+ -.++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~--q~--~~E~~l~v~Lng~~~~dk~al~~ 98 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDI--QE--NGENFLLVRLNGELQTDKIALKG 98 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhH--Hh--cCCeEEEEEECccchhhHHHHHH
Confidence 4789888888888888664322 334567899999999999998887762 11 11222334444433222 23344
Q ss_pred HHHHhc----CCCCCCCcHHHHHHHHHHhhc------CceEEEEecCcccccHHhHHhhhccc-----ccCCCCcEEEEE
Q 000803 222 LLESIT----SATCDLKTVDEVQVQLKKAVD------GKRFLLVLDDVWNEDYSLWVDLKAPF-----LAAAPNSKMIIT 286 (1277)
Q Consensus 222 il~~l~----~~~~~~~~~~~~~~~l~~~l~------~kr~LlVlDdv~~~~~~~~~~l~~~l-----~~~~~~s~iivT 286 (1277)
|.+++. .......+..+....+-+.|+ +-++..|+|.++-.....-..+.-.+ ....+=|-|-+|
T Consensus 99 I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~T 178 (408)
T KOG2228|consen 99 ITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVT 178 (408)
T ss_pred HHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEee
Confidence 444443 222122222222223333332 23678888877542111101111111 123456778889
Q ss_pred cccc-------ccccccCCCceeecCCCCHHHHHHHHHHhh
Q 000803 287 TRNS-------HVASTMGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 287 tr~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
||-. .|-.......++-++.+.-++...++++..
T Consensus 179 trld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 179 TRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred ccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 9864 333333333456667777788777777655
No 242
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.72 E-value=0.043 Score=68.18 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=67.0
Q ss_pred ccccchhhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.++|.++.++.+.+.+..... ..+.....+.++|+.|+|||++|+.++.... . . .+.++.+.-....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~--~--~---~i~id~se~~~~~--- 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG--I--E---LLRFDMSEYMERH--- 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC--C--C---cEEeechhhcccc---
Confidence 578989988888888763211 1112345789999999999999999977431 1 2 2344444322111
Q ss_pred HHHHHHhcCCCC--CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccc
Q 000803 220 KALLESITSATC--DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFL 275 (1277)
Q Consensus 220 ~~il~~l~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 275 (1277)
.+..-++.+.. .......+.+.++ +....+|+||++...+.+.+..+...+-
T Consensus 529 -~~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 529 -TVSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred -cHHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 11112222111 0011112222222 1234699999998887777777766553
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.71 E-value=0.054 Score=57.79 Aligned_cols=92 Identities=16% Similarity=0.132 Sum_probs=54.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC---------CCCCcH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSISKALLESITSAT---------CDLKTV 236 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------~~~~~~ 236 (1277)
.-.++.|+|.+|+|||+||.+++....... .+.=..++|++....++...+. ++.+...... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 347999999999999999999875432110 0011467899987777665443 3333322110 012344
Q ss_pred HHHHHHHHHhhc----CceEEEEecCcc
Q 000803 237 DEVQVQLKKAVD----GKRFLLVLDDVW 260 (1277)
Q Consensus 237 ~~~~~~l~~~l~----~kr~LlVlDdv~ 260 (1277)
+++...+++..+ .+.-++|+|.+.
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 555555554432 345589999984
No 244
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.091 Score=58.63 Aligned_cols=71 Identities=8% Similarity=0.136 Sum_probs=44.7
Q ss_pred CceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccccc-ccccc-CCCceeecCCCCHHHHHHHHHHh
Q 000803 249 GKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSH-VASTM-GPIDHYNLEHLLDDDCWSIFKTH 319 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 319 (1277)
+++=++|+|++...+...-..+...+.....+..+|++|.+.+ +...+ .....+.+.+++.+++.+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688877666655666655544445566777777643 33222 22356889999999998877653
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.68 E-value=0.011 Score=57.21 Aligned_cols=109 Identities=18% Similarity=0.152 Sum_probs=61.3
Q ss_pred ccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHH
Q 000803 145 FGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLE 224 (1277)
Q Consensus 145 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~ 224 (1277)
||+-..++++.+.+..-.. ...-|.|+|..|+||+++|+.++...... ...|..+ ..... .
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~-~~~~~~~---~~~~~-~---------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRA-NGPFIVI---DCASL-P---------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTC-CS-CCCC---CHHCT-C----------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCcc-CCCeEEe---chhhC-c----------
Confidence 5677777777777655432 22457899999999999999888753321 1122211 00010 0
Q ss_pred HhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccC-CCCcEEEEEcccc
Q 000803 225 SITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-APNSKMIITTRNS 290 (1277)
Q Consensus 225 ~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~~s~iivTtr~~ 290 (1277)
.+.+.+. +.--++++|+..-.......+...+... ..+.|+|.||+..
T Consensus 62 ---------------~~~l~~a---~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 ---------------AELLEQA---KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------------HHHHHHC---TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------------HHHHHHc---CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1111111 3345778998776555555665555432 5678999998753
No 246
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.031 Score=58.91 Aligned_cols=82 Identities=17% Similarity=0.306 Sum_probs=53.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
-|+|-++|++|.|||+|.++++++..++-.+.|....-+.++.. .+....... ....+..+.+.|++.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh--------sLFSKWFsE--SgKlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH--------SLFSKWFSE--SGKLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh--------HHHHHHHhh--hhhHHHHHHHHHHHHHh
Confidence 48999999999999999999999988876556665555554432 122222211 12234455566666666
Q ss_pred Cce--EEEEecCcc
Q 000803 249 GKR--FLLVLDDVW 260 (1277)
Q Consensus 249 ~kr--~LlVlDdv~ 260 (1277)
++. +.+.+|.|.
T Consensus 247 d~~~lVfvLIDEVE 260 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVE 260 (423)
T ss_pred CCCcEEEEEeHHHH
Confidence 654 455678883
No 247
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.091 Score=61.53 Aligned_cols=154 Identities=18% Similarity=0.045 Sum_probs=80.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF--DVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..-|-|.|..|+|||+||+++++... +. ..-.+.+|+++.-. ..+.+++.+ ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~--~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KD--LIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cc--cceEEEEEechhccchhHHHHHHHH-----------------HHHHHHH
Confidence 45789999999999999999998654 33 33445666655421 222222221 1233455
Q ss_pred hcCceEEEEecCcccc------cHHhHH-----------hhhcccccCCCCcEEEEEcccccccc-ccC----CCceeec
Q 000803 247 VDGKRFLLVLDDVWNE------DYSLWV-----------DLKAPFLAAAPNSKMIITTRNSHVAS-TMG----PIDHYNL 304 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~------~~~~~~-----------~l~~~l~~~~~~s~iivTtr~~~v~~-~~~----~~~~~~l 304 (1277)
+...+-+|||||++-- +..+|. ++...+...+..-++|.|.....-.. ... -.....+
T Consensus 491 ~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred HhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 6678999999999421 111221 11112222222224455544432111 111 1134678
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCc
Q 000803 305 EHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGL 346 (1277)
Q Consensus 305 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl 346 (1277)
..+...+-.++++...- ... .....+...-+..+|+|.
T Consensus 571 ~ap~~~~R~~IL~~~~s-~~~---~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFS-KNL---SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHH-hhh---hhhhhHHHHHHHHhcCCc
Confidence 88888777777655432 111 111222333378888885
No 248
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.63 E-value=0.051 Score=61.44 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++.++|++|+||||+|..++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999999764
No 249
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.62 E-value=0.049 Score=58.49 Aligned_cols=52 Identities=17% Similarity=0.168 Sum_probs=36.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.-.++.|+|.+|+|||+||.+++....... .+.-..++|++....++..++.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~ 71 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV 71 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH
Confidence 447999999999999999999874322211 1123578999988877655443
No 250
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.61 E-value=0.017 Score=57.58 Aligned_cols=152 Identities=14% Similarity=0.145 Sum_probs=73.0
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHHhh
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCD---LKTVDEVQVQLKKAV 247 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l 247 (1277)
++.|.|.+|.||||+|..+...... ..+++.-...++. +..+.+.......... .....++...+....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-------~~~~iat~~~~~~-e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~ 74 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-------QVLYIATAQPFDD-EMAARIAHHRQRRPAHWQTVEEPLDLAELLRADA 74 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-------CcEeCcCCCCChH-HHHHHHHHHHhcCCCCCeEecccccHHHHHHhhc
Confidence 6899999999999999999763211 1234443333332 3334443322211111 111223444554433
Q ss_pred cCceEEEEecCcccc-------cH-HhHHh----hhcccccCCCCcEEEEEccccccccccCCCceeecCCCCHHHHHHH
Q 000803 248 DGKRFLLVLDDVWNE-------DY-SLWVD----LKAPFLAAAPNSKMIITTRNSHVASTMGPIDHYNLEHLLDDDCWSI 315 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~~-------~~-~~~~~----l~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~L 315 (1277)
.+ .-++++|.+-.- +. ..|.. +...+. ..+..+|+|+.. + -.+..+.+..-..
T Consensus 75 ~~-~~~VlID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~--~~~~tvVlVs~E--v----------g~g~vp~~~~~r~ 139 (170)
T PRK05800 75 AP-GRCVLVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQ--QLPAKIILVTNE--V----------GMGIVPEYRLGRH 139 (170)
T ss_pred CC-CCEEEehhHHHHHHHHhcccchHHHHHHHHHHHHHHH--cCCCCEEEEEcC--C----------cccccCCCHHHHH
Confidence 32 236889987210 10 11222 222222 245566666643 1 1222233444455
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 316 FKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
|...+. .....+...+.++.....|+|+-+
T Consensus 140 ~~d~lG-----~lnq~la~~ad~V~~v~~Gi~~~l 169 (170)
T PRK05800 140 FRDIAG-----RLNQQLAAAADEVYLVVAGLPLKL 169 (170)
T ss_pred HHHHHH-----HHHHHHHHHCCEEEEEeCCCcEec
Confidence 655553 122344555555666667777644
No 251
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.60 E-value=0.033 Score=59.80 Aligned_cols=80 Identities=23% Similarity=0.277 Sum_probs=48.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.-+.++|.+|+|||.||.++.++.. +. .+ .+.++++ .++.+++...... ......+.+.+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~--g~-sv~f~~~------~el~~~Lk~~~~~----~~~~~~l~~~l~----- 166 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KA--GI-SVLFITA------PDLLSKLKAAFDE----GRLEEKLLRELK----- 166 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-Hc--CC-eEEEEEH------HHHHHHHHHHHhc----CchHHHHHHHhh-----
Confidence 4589999999999999999998765 32 22 4556653 3445555444432 111222222222
Q ss_pred ceEEEEecCcccccHHhHH
Q 000803 250 KRFLLVLDDVWNEDYSLWV 268 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~ 268 (1277)
+-=||||||+.......|.
T Consensus 167 ~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred cCCEEEEecccCccCCHHH
Confidence 2348999999765444443
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.60 E-value=0.047 Score=54.79 Aligned_cols=40 Identities=30% Similarity=0.384 Sum_probs=29.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
++.|+|.+|+||||+|..+...... .-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh----cCCEEEEEECCcchH
Confidence 3689999999999999999775432 224577877665543
No 253
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.09 Score=55.12 Aligned_cols=122 Identities=19% Similarity=0.205 Sum_probs=68.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccccccc-----C----Cc---ceEEEEEeCCCc------CH----------------
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDS-----G----KF---DVKAWVCVSDDF------DV---------------- 215 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~-----~----~f---~~~~wv~~s~~~------~~---------------- 215 (1277)
.+++|+|+.|.|||||.+.+..-.....+ + .+ ..+.||.-...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 68999999999999999999862221100 0 01 235555421111 11
Q ss_pred ------HHHHHHHHHHhcCCCC------CCCcHHHHHHHHHHhhcCceEEEEecCc----ccccHHhHHhhhcccccCCC
Q 000803 216 ------LSISKALLESITSATC------DLKTVDEVQVQLKKAVDGKRFLLVLDDV----WNEDYSLWVDLKAPFLAAAP 279 (1277)
Q Consensus 216 ------~~~~~~il~~l~~~~~------~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~l~~~~~ 279 (1277)
.+...+.++.++.... ..+.-+...-.+.+.|..+.=|+|||.= +.......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1333344444442211 1122223334567788889999999973 333333344444445443
Q ss_pred CcEEEEEccccccc
Q 000803 280 NSKMIITTRNSHVA 293 (1277)
Q Consensus 280 ~s~iivTtr~~~v~ 293 (1277)
|..|+++|.+-+..
T Consensus 189 g~tIl~vtHDL~~v 202 (254)
T COG1121 189 GKTVLMVTHDLGLV 202 (254)
T ss_pred CCEEEEEeCCcHHh
Confidence 89999999986543
No 254
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.56 E-value=0.0017 Score=78.92 Aligned_cols=113 Identities=23% Similarity=0.273 Sum_probs=53.9
Q ss_pred CcceEEEEccCCCcCCCh-hhhhccccccceeEeecc-CCcccccCCCCCCcccceeeccccccceeccCCCCCcccc--
Q 000803 954 RNLRYLIISEISTLRSLP-EEIMDNNSRLESLYIGYC-GSLKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLS-- 1029 (1277)
Q Consensus 954 ~~L~~L~l~~~~~l~~l~-~~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~sL~~L~l~~~~L~~L~l~~~~~l~~l~-- 1029 (1277)
++|+.+.+.+|..+.... ......++.|+.|++++| ......+... ....... -+++.|+++.|..+++..
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~----~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLL-LLLLSIC----RKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHh-hhhhhhc----CCcCccchhhhhccCchhHH
Confidence 456666666666555422 123445667777777663 2211111000 0000000 134455555555433221
Q ss_pred CcCccccccCceeeecCCCcc-----ccccccccccEEEecccCCcc
Q 000803 1030 SGIHLLEALEDLHIRNCPKLE-----SIPKGLHKLRSIYIKKCPSLV 1071 (1277)
Q Consensus 1030 ~~~~~l~~L~~L~l~~c~~l~-----~~p~~l~~L~~L~l~~c~~l~ 1071 (1277)
.....+++|+.|.+.+|..+. .+....++|++|+++.|..+.
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT 309 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch
Confidence 111125677777777776432 223345667777777777663
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.54 E-value=0.046 Score=57.84 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=31.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
.-.++.|.|.+|+||||+|.+++..... .-..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~----~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAG----QGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEECCCCCH
Confidence 4579999999999999999998764322 223577887655543
No 256
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.45 E-value=0.045 Score=56.13 Aligned_cols=88 Identities=19% Similarity=0.164 Sum_probs=48.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHHHHHHHHhcCCCC---CCCcHHHH-HHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSISKALLESITSATC---DLKTVDEV-QVQL 243 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~---~~~~~~~~-~~~l 243 (1277)
++|+.++|+.|+||||.+..++.....+ -..+..++... .....+-++...+.++.+.. ...+..++ .+.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l 76 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREAL 76 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHH
Confidence 3799999999999999998877644332 22456666432 23345556666676664321 12223332 2333
Q ss_pred HHhhcCceEEEEecCcc
Q 000803 244 KKAVDGKRFLLVLDDVW 260 (1277)
Q Consensus 244 ~~~l~~kr~LlVlDdv~ 260 (1277)
++.-.++.=+|++|-..
T Consensus 77 ~~~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 77 EKFRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHHHTTSSEEEEEE-S
T ss_pred HHHhhcCCCEEEEecCC
Confidence 33322233466667663
No 257
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.44 E-value=0.057 Score=57.63 Aligned_cols=87 Identities=20% Similarity=0.239 Sum_probs=51.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcC-------CCCCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITS-------ATCDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~-------~~~~~~~~~---- 237 (1277)
.-++|+|..|+||||||+++++..+.. +-+.++++-+.+... +.++.+++.+.=.. ...+.....
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~---~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKA---HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhc---CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 568999999999999999999865432 224466677766543 44444444432100 011111111
Q ss_pred -HHHHHHHHhh---cCceEEEEecCc
Q 000803 238 -EVQVQLKKAV---DGKRFLLVLDDV 259 (1277)
Q Consensus 238 -~~~~~l~~~l---~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+|+||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122344444 389999999998
No 258
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.41 E-value=0.019 Score=59.14 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=52.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh-h-
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA-V- 247 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~-l- 247 (1277)
++..|.|.+|.||||+++.+....... . ..+.+......-... +.+..+. +..++.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~---g--~~v~~~apT~~Aa~~----L~~~~~~---~a~Ti~~~l~~~~~~~~~ 86 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA---G--KRVIGLAPTNKAAKE----LREKTGI---EAQTIHSFLYRIPNGDDE 86 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT---T----EEEEESSHHHHHH----HHHHHTS----EEEHHHHTTEECCEECC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC---C--CeEEEECCcHHHHHH----HHHhhCc---chhhHHHHHhcCCccccc
Confidence 588899999999999999887643322 1 233333333222222 2222221 111111110000000 0
Q ss_pred ----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEc
Q 000803 248 ----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT 287 (1277)
Q Consensus 248 ----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTt 287 (1277)
..++-+||+|+++..+...+..+...... .|+|+|+.=
T Consensus 87 ~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvG 128 (196)
T PF13604_consen 87 GRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVG 128 (196)
T ss_dssp SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE
T ss_pred ccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 12345999999988777777776665544 477887764
No 259
>PRK05541 adenylylsulfate kinase; Provisional
Probab=95.39 E-value=0.021 Score=58.11 Aligned_cols=26 Identities=46% Similarity=0.620 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
...+|.++|+.|+||||+|+.+++..
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998754
No 260
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.38 E-value=0.089 Score=51.44 Aligned_cols=120 Identities=18% Similarity=0.275 Sum_probs=69.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe---------------------CCCc--------------
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV---------------------SDDF-------------- 213 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~---------------------s~~~-------------- 213 (1277)
-.++.++|++|.|||||.+.+|...+... ..+|+.- -+++
T Consensus 28 Gef~fl~GpSGAGKSTllkLi~~~e~pt~-----G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 28 GEFVFLTGPSGAGKSTLLKLIYGEERPTR-----GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhhcCCC-----ceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 36899999999999999999998654322 3344421 1111
Q ss_pred -------CHHHHHHH---HHHHhcCCC------CCCCcHHHHHHHHHHhhcCceEEEEecCc----ccccHHhHHhhhcc
Q 000803 214 -------DVLSISKA---LLESITSAT------CDLKTVDEVQVQLKKAVDGKRFLLVLDDV----WNEDYSLWVDLKAP 273 (1277)
Q Consensus 214 -------~~~~~~~~---il~~l~~~~------~~~~~~~~~~~~l~~~l~~kr~LlVlDdv----~~~~~~~~~~l~~~ 273 (1277)
...++.+. .++..+... ...+.-++..-.|.+.+-+++-+++-|.= +.+ ..|+-+ ..
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~--~s~~im-~l 179 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPD--LSWEIM-RL 179 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChH--HHHHHH-HH
Confidence 11122222 222222111 11223344455677777888888988853 222 344433 23
Q ss_pred ccc-CCCCcEEEEEcccccccccc
Q 000803 274 FLA-AAPNSKMIITTRNSHVASTM 296 (1277)
Q Consensus 274 l~~-~~~~s~iivTtr~~~v~~~~ 296 (1277)
|.. +..|..|+++|.+.++...+
T Consensus 180 feeinr~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 180 FEEINRLGTTVLMATHDLELVNRM 203 (223)
T ss_pred HHHHhhcCcEEEEEeccHHHHHhc
Confidence 332 34699999999998876655
No 261
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.039 Score=66.98 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=83.6
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccccc--CCcceEEEEEeCCCcCHHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDS--GKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~--~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
.++||++|++++++.|....... -.++|.+|||||++|.-++.......- .-=+..++.-
T Consensus 171 PvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sL------------ 232 (786)
T COG0542 171 PVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSL------------ 232 (786)
T ss_pred CCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEe------------
Confidence 48899999999999998754321 247899999999988766653211110 0001111110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCcccc--------cHHhHHhhhcccccCCCCcEEEEEcccccc
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNE--------DYSLWVDLKAPFLAAAPNSKMIITTRNSHV 292 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 292 (1277)
++..-+.+......=.+.+...+.+.-+.++..+++|.+... ..-+-..+..|-...+.--.|=.||-++ -
T Consensus 233 D~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~E-Y 311 (786)
T COG0542 233 DLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLDE-Y 311 (786)
T ss_pred cHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHHH-H
Confidence 111112222222222333344444444456899999998431 0011122333333333333455555432 1
Q ss_pred cc-------ccCCCceeecCCCCHHHHHHHHHHhh
Q 000803 293 AS-------TMGPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 293 ~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
.. ......++.+..-+.+++..++....
T Consensus 312 Rk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 312 RKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 11 11334678888899999988876543
No 262
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.31 E-value=0.043 Score=54.62 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=73.6
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCC---CCcHHHHHHHHHHhhc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCD---LKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~---~~~~~~~~~~l~~~l~ 248 (1277)
+.|.|..|.|||++|.++... ....++++.-.+.++.+ ..+.|..-....... .....++.+.+.+. .
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-------~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~ 72 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-------LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTIETPRDLVSALKEL-D 72 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-------cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C
Confidence 679999999999999998753 11345666666666543 333333211111111 11223334444322 2
Q ss_pred CceEEEEecCccc--cc-------------HHhHHhhhcccccCCCCcEEEEEccccccccccCCCceeecCCCCHHHHH
Q 000803 249 GKRFLLVLDDVWN--ED-------------YSLWVDLKAPFLAAAPNSKMIITTRNSHVASTMGPIDHYNLEHLLDDDCW 313 (1277)
Q Consensus 249 ~kr~LlVlDdv~~--~~-------------~~~~~~l~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~ 313 (1277)
+.-.+++|.+-. .+ ...+..+...+. ..+..+|+||. +|.. +....+..-
T Consensus 73 -~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~viVsn--EvG~----------g~vp~~~~~ 137 (169)
T cd00544 73 -PGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVR--NKPGTLILVSN--EVGL----------GVVPENALG 137 (169)
T ss_pred -CCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHH--cCCCcEEEEEC--CcCC----------CCCCCCHHH
Confidence 233799999711 10 011111222222 24556666664 3322 233344555
Q ss_pred HHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchH
Q 000803 314 SIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPL 348 (1277)
Q Consensus 314 ~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 348 (1277)
..|...+. .....+...|.+++....|+|+
T Consensus 138 r~f~d~lG-----~lnq~la~~ad~v~~vv~Gip~ 167 (169)
T cd00544 138 RRFRDELG-----RLNQRLAALADEVYLVVSGIPL 167 (169)
T ss_pred HHHHHHHH-----HHHHHHHHHCCEEEEEECCcce
Confidence 66666553 1223445555556666677775
No 263
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.30 E-value=0.0091 Score=61.43 Aligned_cols=60 Identities=27% Similarity=0.304 Sum_probs=26.4
Q ss_pred CCCCccceeeccCC--ccc-cccccccccccCcEEEecCCcCccccchh---hccccCcCeeeecCcc
Q 000803 573 EDLRLLRYLNLADT--DIR-SLPESSCSLLNLEILILRNCSSLIKLPSK---IRRLINLCHLDIRGAI 634 (1277)
Q Consensus 573 ~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~---i~~L~~L~~L~l~~~~ 634 (1277)
..|.+|++|.++.| .+. .++-...++++|++|++++| .+.. +++ +.++.+|..|++..|.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~-lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKD-LSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-cccc-ccccchhhhhcchhhhhcccCC
Confidence 34455555555555 332 33333334455555555553 2222 111 2344445555555443
No 264
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.29 E-value=0.047 Score=61.34 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
-.++.++|+.|+||||++..+......+. ....+..++... .....+-++...+.++.......+..++...+.+ +
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~--G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRF--GASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-L 213 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-h
Confidence 46899999999999999999987532221 123455555322 2233444445555555433323333334444433 3
Q ss_pred cCceEEEEecCccc
Q 000803 248 DGKRFLLVLDDVWN 261 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~ 261 (1277)
.++ =+|++|....
T Consensus 214 ~~~-DlVLIDTaG~ 226 (374)
T PRK14722 214 RNK-HMVLIDTIGM 226 (374)
T ss_pred cCC-CEEEEcCCCC
Confidence 444 4566999854
No 265
>PTZ00494 tuzin-like protein; Provisional
Probab=95.29 E-value=0.23 Score=55.31 Aligned_cols=170 Identities=9% Similarity=0.168 Sum_probs=101.9
Q ss_pred CCCCCCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH
Q 000803 136 SSVPTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV 215 (1277)
Q Consensus 136 ~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~ 215 (1277)
..+.....+|.|+.|-..+.+.|.+-+. ..++++++.|.-|.||++|.+........ ..++|++....
T Consensus 365 ~a~a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE~~-------paV~VDVRg~E-- 432 (664)
T PTZ00494 365 LAAAAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVEGV-------ALVHVDVGGTE-- 432 (664)
T ss_pred ccccccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHcCC-------CeEEEEecCCc--
Confidence 3445567889999998888888866543 45799999999999999999998764322 45788877654
Q ss_pred HHHHHHHHHHhcCCCCCC--CcHHHHHHHHHH---hhcCceEEEEec--CcccccHHhHHhhhcccccCCCCcEEEEEcc
Q 000803 216 LSISKALLESITSATCDL--KTVDEVQVQLKK---AVDGKRFLLVLD--DVWNEDYSLWVDLKAPFLAAAPNSKMIITTR 288 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~--~~~~~~~~~l~~---~l~~kr~LlVlD--dv~~~~~~~~~~l~~~l~~~~~~s~iivTtr 288 (1277)
+.++.+.+.++.+..+. +-++-+.+..+. ...++.=+||+- +-.+- .-.+.+.. .+...-.-|.|++---
T Consensus 433 -DtLrsVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL-~RVYnE~v-aLacDrRlCHvv~EVp 509 (664)
T PTZ00494 433 -DTLRSVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDL-GRVYGEVV-SLVSDCQACHIVLAVP 509 (664)
T ss_pred -chHHHHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcH-HHHHHHHH-HHHccchhheeeeech
Confidence 44677888888665432 223434443333 234554455542 22111 01122211 2233334567776543
Q ss_pred cccccccc---CCCceeecCCCCHHHHHHHHHHhh
Q 000803 289 NSHVASTM---GPIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 289 ~~~v~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
.+.+.... .....|.+.+++.++|.++..+..
T Consensus 510 lESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 510 MKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred HhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 33221111 122468899999999988776543
No 266
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.28 E-value=0.24 Score=62.81 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
..+.|.+..++++.+.+.-.-. ......+-+.++|++|+|||++|+++++.... .| +.+..+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~----~f---i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA----NF---IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC----CE---EEEehH----
Confidence 3467877777777665532100 00022345789999999999999999885321 23 222211
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc--------H----HhHHhhhccccc--CCCC
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED--------Y----SLWVDLKAPFLA--AAPN 280 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~~ 280 (1277)
+ ++.... ......+...+...-+..+.+|+||+++.-. . ....++...+.. ...+
T Consensus 522 --~----l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 522 --E----ILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred --H----Hhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 111111 0111222233333334567999999985310 0 011222222222 1234
Q ss_pred cEEEEEccccccccc-c----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCch
Q 000803 281 SKMIITTRNSHVAST-M----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLP 347 (1277)
Q Consensus 281 s~iivTtr~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glP 347 (1277)
--||.||...+.... + .-...+.++..+.++-.++|..+.-.. ....... ...+++.+.|.-
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 456667755443321 1 223568888889999999987665321 1111112 245667777653
No 267
>PRK13695 putative NTPase; Provisional
Probab=95.25 E-value=0.019 Score=58.16 Aligned_cols=23 Identities=39% Similarity=0.444 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
-++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988754
No 268
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.081 Score=60.11 Aligned_cols=92 Identities=12% Similarity=0.172 Sum_probs=53.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHH--HHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVL--SISKALLESITSATCDLKTVDEVQVQLKK 245 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 245 (1277)
..+++.++|+.|+||||.+..++.........+-..+..+++. .+... ..++...+.++.+.......+++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 3579999999999999999888764432210011234445543 33332 22444444454433333445566555555
Q ss_pred hhcCceEEEEecCcccc
Q 000803 246 AVDGKRFLLVLDDVWNE 262 (1277)
Q Consensus 246 ~l~~kr~LlVlDdv~~~ 262 (1277)
. .+.-+|++|.....
T Consensus 252 ~--~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S--KDFDLVLVDTIGKS 266 (388)
T ss_pred h--CCCCEEEEcCCCCC
Confidence 3 34568889998553
No 269
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.24 E-value=0.06 Score=57.98 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=39.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
.+.=|+|.+|+|||.||.+++-..... .++.=..++|++-...|...++. +|++..
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~ 96 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERF 96 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHT
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhcc
Confidence 689999999999999998876433221 11223468999988889887765 456554
No 270
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.027 Score=57.23 Aligned_cols=78 Identities=26% Similarity=0.287 Sum_probs=44.4
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHH--hcCCCCCCCcHHHHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLES--ITSATCDLKTVDEVQVQLK 244 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~--l~~~~~~~~~~~~~~~~l~ 244 (1277)
..+.+|+|.|.+|.||||+|+.++..... . .+.-++- +++-...-.....+. .........+.+-+.+.|.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~----~--~~~~I~~-D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGV----E--KVVVISL-DDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCc----C--cceEeec-cccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH
Confidence 35689999999999999999999874321 1 1122221 111111111111111 1122334566777888888
Q ss_pred HhhcCce
Q 000803 245 KAVDGKR 251 (1277)
Q Consensus 245 ~~l~~kr 251 (1277)
..+++++
T Consensus 79 ~L~~g~~ 85 (218)
T COG0572 79 DLKQGKP 85 (218)
T ss_pred HHHcCCc
Confidence 8888877
No 271
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.23 E-value=0.017 Score=67.10 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.++|.++.++++++.|......-...-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5889999999999999543222124457999999999999999999987
No 272
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.36 Score=55.85 Aligned_cols=98 Identities=14% Similarity=0.257 Sum_probs=62.0
Q ss_pred CccccchhhHHHHHHHHhccccc------CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAA------DHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV 215 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~ 215 (1277)
..+=|.++.+.++.+++..-... +-...+=|-++|++|+|||.||++++++..+ .| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v----Pf-----~~isAp--- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV----PF-----LSISAP--- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC----ce-----Eeecch---
Confidence 45668888888887776542110 1123467889999999999999999986544 33 222222
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccc
Q 000803 216 LSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWN 261 (1277)
Q Consensus 216 ~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 261 (1277)
+|...+. ....+.+.+...+....-++++++|+++-
T Consensus 258 -----eivSGvS-----GESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 -----EIVSGVS-----GESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred -----hhhcccC-----cccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 2222222 22334455555566667899999999954
No 273
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.21 E-value=0.063 Score=55.46 Aligned_cols=83 Identities=22% Similarity=0.178 Sum_probs=43.7
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHh----cCCCCCCCcHHHHHHHHHHh
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESI----TSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l----~~~~~~~~~~~~~~~~l~~~ 246 (1277)
||+|.|.+|+||||+|+.+.................... +.+.........-... ........+.+.+.+.++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEee-cccccccchhhHhhccccccCCCCccccCHHHHHHHHHHH
Confidence 799999999999999999987543221000011233332 2222222211211111 11122345677777777776
Q ss_pred hcCceEEE
Q 000803 247 VDGKRFLL 254 (1277)
Q Consensus 247 l~~kr~Ll 254 (1277)
.+++..-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 66665433
No 274
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.19 E-value=0.076 Score=58.83 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=41.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
.-.++-|+|.+|+|||+|+.+++-..... .++.=..++|++....|+..++.+ +++.++
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g 155 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFG 155 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 34799999999999999998876322211 111224689999988888887754 555554
No 275
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.17 E-value=0.028 Score=55.37 Aligned_cols=103 Identities=22% Similarity=0.260 Sum_probs=71.5
Q ss_pred eeEEecCCCCCCCCCcCCC-CCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhc-cccCcCeeeecC
Q 000803 555 LRLLSLQGYYIGELPIPFE-DLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIR-RLINLCHLDIRG 632 (1277)
Q Consensus 555 Lr~L~L~~~~i~~lp~~~~-~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~-~L~~L~~L~l~~ 632 (1277)
=+.++|.+..+..+-. ++ -+.+.-.+||++|.+..++ .+..+..|.+|.+++ +.+..+-..+. .+++|..|.+.+
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecC
Confidence 4556666665533321 11 1346778999999988875 477899999999998 57888777675 457899999999
Q ss_pred ccccccCCC--CCCCCCCCcccCceeeCCCC
Q 000803 633 AILLKEMPF--GMKELKNLQTLSNFVVGKGG 661 (1277)
Q Consensus 633 ~~~l~~~p~--~i~~L~~L~~L~~~~~~~~~ 661 (1277)
|+ +..+.. .+..+++|++|.+.++....
T Consensus 98 Ns-i~~l~dl~pLa~~p~L~~Ltll~Npv~~ 127 (233)
T KOG1644|consen 98 NS-IQELGDLDPLASCPKLEYLTLLGNPVEH 127 (233)
T ss_pred cc-hhhhhhcchhccCCccceeeecCCchhc
Confidence 87 555432 25566777777776665443
No 276
>PRK08233 hypothetical protein; Provisional
Probab=95.15 E-value=0.062 Score=55.05 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..+|+|.|.+|+||||||+.+....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 3799999999999999999998743
No 277
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.12 E-value=0.48 Score=57.45 Aligned_cols=182 Identities=15% Similarity=0.136 Sum_probs=100.2
Q ss_pred ccccchh---hHHHHHHHHhccccc---CCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHH
Q 000803 143 VVFGREE---DKTKILEMVLTDTAA---DHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVL 216 (1277)
Q Consensus 143 ~~vGr~~---~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 216 (1277)
++.|-++ |++++++.|.++..- +..-++=+-++|++|.|||-||++++-...+ . |++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV----P-----F~svSGS---- 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV----P-----FFSVSGS---- 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC----c-----eeeechH----
Confidence 5667765 455556666554311 1133567889999999999999999875433 2 3344332
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc---------------HHhHHhhhcccccCCCCc
Q 000803 217 SISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED---------------YSLWVDLKAPFLAAAPNS 281 (1277)
Q Consensus 217 ~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~~~s 281 (1277)
+..+.+.+.. ...+.+.....=...++.|.+|+++... ....+++.........+.
T Consensus 379 ----EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~ 449 (774)
T KOG0731|consen 379 ----EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSK 449 (774)
T ss_pred ----HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCC
Confidence 2222222211 1111122222223457888888873311 122344443333333333
Q ss_pred --EEEEEcccccccccc-----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 282 --KMIITTRNSHVASTM-----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 282 --~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
-++-+|...++.... .-++.+.++.-+.....++|..++-.-... .+..++++ |+...-|.+=|.
T Consensus 450 ~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 450 GVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHHH
Confidence 334456655554321 224568888888899999999888432221 33445556 888888887543
No 278
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.08 E-value=0.14 Score=64.85 Aligned_cols=181 Identities=18% Similarity=0.125 Sum_probs=91.5
Q ss_pred CccccchhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
..+.|.++.++++.+.+...-. ..-...+-+.++|++|+|||+||+.+++... . .| +.++.+.
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~--~--~~---i~i~~~~--- 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG--A--YF---ISINGPE--- 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC--C--eE---EEEecHH---
Confidence 3578999999888777642100 0002235688999999999999999987431 1 22 2222111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcCceEEEEecCccccc-----------HHhHHhhhcccccC-CCCcE
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAVDGKRFLLVLDDVWNED-----------YSLWVDLKAPFLAA-APNSK 282 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~~s~ 282 (1277)
+. ... .......+...++........+|++|+++... ......+...+... ..+..
T Consensus 248 ---i~----~~~-----~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 248 ---IM----SKY-----YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred ---Hh----ccc-----ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 10 000 00112223333334445567899999984321 00112222222211 22333
Q ss_pred EEE-Eccccc-ccccc---C-CCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHH
Q 000803 283 MII-TTRNSH-VASTM---G-PIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLA 349 (1277)
Q Consensus 283 iiv-Ttr~~~-v~~~~---~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 349 (1277)
++| ||...+ +...+ + -...+.+...+.++-.+++..+.-.. .... ......+++.+.|.--|
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~----d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE----DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc----ccCHHHHHHhCCCCCHH
Confidence 444 444322 21111 1 12457788888888888887554211 1111 11235677888886533
No 279
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.07 E-value=0.046 Score=60.13 Aligned_cols=85 Identities=21% Similarity=0.176 Sum_probs=53.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCCcHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSAT-----CDLKTVDEVQV 241 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~ 241 (1277)
+.-+++-|+|++|+||||||.+++..... .-..++|++..+.++.. .++.++.+. ....+.++...
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~~~----~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEAQK----LGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALE 123 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHH
Confidence 34579999999999999999998754322 22457899887776653 233333211 12234455555
Q ss_pred HHHHhhc-CceEEEEecCcc
Q 000803 242 QLKKAVD-GKRFLLVLDDVW 260 (1277)
Q Consensus 242 ~l~~~l~-~kr~LlVlDdv~ 260 (1277)
.+....+ +.--+||+|-|-
T Consensus 124 i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 124 IADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred HHHHHHhccCCCEEEEcchH
Confidence 5555443 356689999973
No 280
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.06 E-value=0.082 Score=57.09 Aligned_cols=134 Identities=21% Similarity=0.282 Sum_probs=71.5
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEE----EEeCCCcC-----
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAW----VCVSDDFD----- 214 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~w----v~~s~~~~----- 214 (1277)
+-+|..+-.-.+++|++ +.+..|.+.|.+|.|||.||-++.-..... ...|..++- +.+.++..
T Consensus 226 i~prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e-~~~y~KiiVtRp~vpvG~dIGfLPG~ 298 (436)
T COG1875 226 IRPRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLE-RKRYRKIIVTRPTVPVGEDIGFLPGT 298 (436)
T ss_pred cCcccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHH-HhhhceEEEecCCcCcccccCcCCCc
Confidence 34566666677778876 457899999999999999986553221111 114443322 22333211
Q ss_pred ----HHHHHHHH---HHHhcCCCCCCCcHHHHHHHHH---------HhhcCc---eEEEEecCcccccHHhHHhhhcccc
Q 000803 215 ----VLSISKAL---LESITSATCDLKTVDEVQVQLK---------KAVDGK---RFLLVLDDVWNEDYSLWVDLKAPFL 275 (1277)
Q Consensus 215 ----~~~~~~~i---l~~l~~~~~~~~~~~~~~~~l~---------~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~ 275 (1277)
+.-..+.| ++.+....... ...+...+. .+.+++ .-+||+|...+-...+ ++..+.
T Consensus 299 eEeKm~PWmq~i~DnLE~L~~~~~~~--~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTilt 373 (436)
T COG1875 299 EEEKMGPWMQAIFDNLEVLFSPNEPG--DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILT 373 (436)
T ss_pred hhhhccchHHHHHhHHHHHhcccccc--hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHH
Confidence 11122222 22222222111 222222211 233554 4689999998755533 344444
Q ss_pred cCCCCcEEEEEccc
Q 000803 276 AAAPNSKMIITTRN 289 (1277)
Q Consensus 276 ~~~~~s~iivTtr~ 289 (1277)
..+.||||+.|--.
T Consensus 374 R~G~GsKIVl~gd~ 387 (436)
T COG1875 374 RAGEGSKIVLTGDP 387 (436)
T ss_pred hccCCCEEEEcCCH
Confidence 56789999998643
No 281
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.03 E-value=0.12 Score=55.44 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=52.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC----------------
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSAT---------------- 230 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~---------------- 230 (1277)
+.-.++.|+|.+|+|||+||.++..... + .=..++|++..+. ..++.+.+ .+++-..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~-~---~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~ 95 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGAL-K---QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNT 95 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHH-h---CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccc
Confidence 3457999999999999999999865321 1 1246788888654 34444432 2222110
Q ss_pred ----CCCCcHHHHHHHHHHhhcC-ceEEEEecCcc
Q 000803 231 ----CDLKTVDEVQVQLKKAVDG-KRFLLVLDDVW 260 (1277)
Q Consensus 231 ----~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 260 (1277)
......+.+...+.+.+.. +.-++|+|.+-
T Consensus 96 ~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 96 EGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112234555666666643 55589999974
No 282
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.98 E-value=0.09 Score=54.46 Aligned_cols=82 Identities=27% Similarity=0.405 Sum_probs=50.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhc-------CCCCCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESIT-------SATCDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~-------~~~~~~~~~~---- 237 (1277)
.-++|+|.+|+|||+|+.++.+... -+.++++-+.+.. .+.++.+++...-. ....+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~------~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD------ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT------TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc------ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 4689999999999999999988642 2445788887654 34455555433200 0111111111
Q ss_pred -----HHHHHHHHhhcCceEEEEecCc
Q 000803 238 -----EVQVQLKKAVDGKRFLLVLDDV 259 (1277)
Q Consensus 238 -----~~~~~l~~~l~~kr~LlVlDdv 259 (1277)
...+.+++ +++.+|+++||+
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred hccchhhhHHHhh--cCCceeehhhhh
Confidence 12233444 689999999999
No 283
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.96 E-value=0.023 Score=53.72 Aligned_cols=27 Identities=33% Similarity=0.391 Sum_probs=22.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVE 196 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~ 196 (1277)
--|+|.|++|+||||+++.+.+..+.+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~ 32 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREK 32 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhc
Confidence 468999999999999999998755433
No 284
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.96 E-value=0.18 Score=58.67 Aligned_cols=88 Identities=16% Similarity=0.160 Sum_probs=48.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
.+++.++|++|+||||++..++....... .-..+..|+... +.. ...++...+.++.......+.+++...+++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~--~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~ 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY--GKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc--CCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh
Confidence 36999999999999999988765433111 123456666433 221 1222233333333322233445555555543
Q ss_pred hcCceEEEEecCccc
Q 000803 247 VDGKRFLLVLDDVWN 261 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~ 261 (1277)
. ..=+||+|....
T Consensus 298 -~-~~DlVlIDt~G~ 310 (424)
T PRK05703 298 -R-DCDVILIDTAGR 310 (424)
T ss_pred -C-CCCEEEEeCCCC
Confidence 2 346788897643
No 285
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=94.92 E-value=0.11 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.2
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
+...+++|.|+.|+|||||++.+.....
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5578999999999999999999987443
No 286
>PRK14974 cell division protein FtsY; Provisional
Probab=94.92 E-value=0.12 Score=57.56 Aligned_cols=90 Identities=18% Similarity=0.124 Sum_probs=48.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCC---CCCcHHHH-HH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATC---DLKTVDEV-QV 241 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~---~~~~~~~~-~~ 241 (1277)
+..++.++|+.|+||||++..++...... .+ .++.+. .+.+.. ...++.....++.... ...+...+ .+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~---g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ 213 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN---GF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYD 213 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHH
Confidence 46899999999999999888877643221 23 233443 333332 2334445555553321 12233222 23
Q ss_pred HHHHhhcCceEEEEecCcccc
Q 000803 242 QLKKAVDGKRFLLVLDDVWNE 262 (1277)
Q Consensus 242 ~l~~~l~~kr~LlVlDdv~~~ 262 (1277)
.++.......=+|++|-....
T Consensus 214 ai~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 214 AIEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHHhCCCCEEEEECCCcc
Confidence 333222222238999998654
No 287
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.86 E-value=0.064 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.589 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhc
Q 000803 171 VIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999975
No 288
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.86 E-value=0.0016 Score=66.63 Aligned_cols=79 Identities=23% Similarity=0.244 Sum_probs=41.4
Q ss_pred CeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccch--hhccccCcCeeee
Q 000803 553 KKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPS--KIRRLINLCHLDI 630 (1277)
Q Consensus 553 ~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l 630 (1277)
.+.+.|++.||.+..+ +.+.+++.|++|.||-|.|+.| ..+..+++|+.|.|+.| .|..+-+ -+.+|++|+.|.|
T Consensus 19 ~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhh
Confidence 3445555666655554 2234556666666666666655 23555555555555552 3333332 1345566666666
Q ss_pred cCcc
Q 000803 631 RGAI 634 (1277)
Q Consensus 631 ~~~~ 634 (1277)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5554
No 289
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.85 E-value=0.18 Score=59.80 Aligned_cols=60 Identities=15% Similarity=0.271 Sum_probs=43.1
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV 209 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~ 209 (1277)
.++.-.+-++++..||....... ...+++.+.|++|+||||.++.+++.. .|+.+-|.+-
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~el------g~~v~Ew~np 79 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL------GFEVQEWINP 79 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHHh------CCeeEEecCC
Confidence 44445566788888886532211 345799999999999999999998753 5677778653
No 290
>PRK09354 recA recombinase A; Provisional
Probab=94.82 E-value=0.064 Score=59.50 Aligned_cols=85 Identities=20% Similarity=0.185 Sum_probs=55.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCCcHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSAT-----CDLKTVDEVQV 241 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~ 241 (1277)
+.-+++-|+|++|+||||||.+++..... .-..++||+..+.++.. .++.++.+. ......++...
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~~~----~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~ 128 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALE 128 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 34589999999999999999988764322 22467899988877753 334443221 12233555555
Q ss_pred HHHHhhc-CceEEEEecCcc
Q 000803 242 QLKKAVD-GKRFLLVLDDVW 260 (1277)
Q Consensus 242 ~l~~~l~-~kr~LlVlDdv~ 260 (1277)
.+...++ +..-+||+|-|-
T Consensus 129 i~~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 129 IADTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHHHhhcCCCCEEEEeChh
Confidence 5555543 356689999984
No 291
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.82 E-value=0.18 Score=51.43 Aligned_cols=118 Identities=17% Similarity=0.226 Sum_probs=61.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEE---eCCCcCHHHHHH------HHHHHhcCCC-----C-CCC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVC---VSDDFDVLSISK------ALLESITSAT-----C-DLK 234 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~---~s~~~~~~~~~~------~il~~l~~~~-----~-~~~ 234 (1277)
.+++|+|..|.|||||++.++..... ....+++. +.. .+...... ++++.++... . ...
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~~-----~~G~v~~~g~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLKP-----SSGEILLDGKDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-----CCcEEEECCEECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 58999999999999999999875332 22333332 211 12211111 1344443221 1 111
Q ss_pred cHHHHHHHHHHhhcCceEEEEecCccc-ccHHhHHhhhcccccC-CC-CcEEEEEccccccc
Q 000803 235 TVDEVQVQLKKAVDGKRFLLVLDDVWN-EDYSLWVDLKAPFLAA-AP-NSKMIITTRNSHVA 293 (1277)
Q Consensus 235 ~~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-~s~iivTtr~~~v~ 293 (1277)
.-+...-.+-+.+...+-++++|+--. -+......+...+... .. +..||++|.+.+..
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 222233345566667788899998732 1122223333333322 12 67888888876543
No 292
>PRK05439 pantothenate kinase; Provisional
Probab=94.76 E-value=0.13 Score=56.25 Aligned_cols=82 Identities=15% Similarity=0.021 Sum_probs=43.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhc-CCCCCCCcHHHHHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESIT-SATCDLKTVDEVQVQLKK 245 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~-~~~~~~~~~~~~~~~l~~ 245 (1277)
+...+|+|.|.+|+||||+|+.+..-..... .-..+.-++...-+...+.+.+- ..+. ....+.-+.+.+.+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~--~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~ 160 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWP--EHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSD 160 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhC--CCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHH
Confidence 5578999999999999999998866321110 11123344433322222222110 0111 112334566666666666
Q ss_pred hhcCce
Q 000803 246 AVDGKR 251 (1277)
Q Consensus 246 ~l~~kr 251 (1277)
...++.
T Consensus 161 Lk~G~~ 166 (311)
T PRK05439 161 VKSGKP 166 (311)
T ss_pred HHcCCC
Confidence 655554
No 293
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.76 E-value=0.072 Score=58.63 Aligned_cols=85 Identities=20% Similarity=0.184 Sum_probs=53.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC-----CCCCcHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSAT-----CDLKTVDEVQV 241 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~-----~~~~~~~~~~~ 241 (1277)
+.-+++-|+|++|+||||||.++...... .-..++|++..+.++.. .+++++.+. ......++...
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~----~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~ 123 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQK----AGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALE 123 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH----cCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHH
Confidence 34589999999999999999987764322 22457899877766553 234443221 12234455555
Q ss_pred HHHHhhc-CceEEEEecCcc
Q 000803 242 QLKKAVD-GKRFLLVLDDVW 260 (1277)
Q Consensus 242 ~l~~~l~-~kr~LlVlDdv~ 260 (1277)
.+....+ +..-+||+|.|-
T Consensus 124 ~~~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 124 IAETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHHHhhccCCcEEEEcchh
Confidence 5555443 456689999984
No 294
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.75 E-value=0.15 Score=51.83 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|..|.|||||++.+..-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 589999999999999999998753
No 295
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.74 E-value=0.18 Score=57.00 Aligned_cols=53 Identities=30% Similarity=0.329 Sum_probs=37.6
Q ss_pred ccccch---hhHHHHHHHHhcccc---cCCCCeEEEEEEccCCCcHHHHHHHHhccccc
Q 000803 143 VVFGRE---EDKTKILEMVLTDTA---ADHANFAVIPIVGMGGIGKTTLAREVYNDKAV 195 (1277)
Q Consensus 143 ~~vGr~---~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~ 195 (1277)
++-|-| .|+++|++.|.+... -++.-++=|-++|++|.|||-||++++-...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345665 467788888876531 11133567889999999999999999875544
No 296
>PRK07667 uridine kinase; Provisional
Probab=94.68 E-value=0.04 Score=56.78 Aligned_cols=39 Identities=18% Similarity=0.345 Sum_probs=29.5
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 151 KTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+.+.+.+.... ++..+|+|.|.+|+||||+|+.+....
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~l 41 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKENM 41 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 455666664433 345899999999999999999998743
No 297
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.67 E-value=0.15 Score=49.54 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=53.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.+++|+|..|.|||||++.+....... ...+|+.-.. .+..-. ....-+...-.+.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~-----~G~i~~~~~~-------------~i~~~~-~lS~G~~~rv~laral~~ 87 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPD-----EGIVTWGSTV-------------KIGYFE-QLSGGEKMRLALAKLLLE 87 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCC-----ceEEEECCeE-------------EEEEEc-cCCHHHHHHHHHHHHHhc
Confidence 689999999999999999998754322 2333332100 000000 011112222334555566
Q ss_pred ceEEEEecCccc-ccHHhHHhhhcccccCCCCcEEEEEccccccc
Q 000803 250 KRFLLVLDDVWN-EDYSLWVDLKAPFLAAAPNSKMIITTRNSHVA 293 (1277)
Q Consensus 250 kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~ 293 (1277)
++-++++|+--. -+......+...+... +..||++|.+.+.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~ 130 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHH
Confidence 677888888632 1122223333333222 34688888775544
No 298
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.65 E-value=0.11 Score=54.72 Aligned_cols=23 Identities=35% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+|+|.|..|+||||+|+.+....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l 23 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALL 23 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998743
No 299
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.61 E-value=0.021 Score=59.31 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=52.8
Q ss_pred CcccceeeecccccccccCccCCCCCCCCCceeccCCCCCCCCC---CCCCCCccceeeccCChhhHHHhccCCCCCccc
Q 000803 1181 PASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFP---EVGLPSSLLSLEIKNCPKLRKQCKRDRGKEWSK 1257 (1277)
Q Consensus 1181 ~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~lp---~~~~~~~L~~L~i~~c~~L~~~~~~~~~~~w~~ 1257 (1277)
++++..+-+..||--..-...+...++++-.|+++.+ ++.+.. ...-.++|..|.+.++|.... .+. +-.-...
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~-l~~-~err~ll 274 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP-LRG-GERRFLL 274 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc-ccC-CcceEEE
Confidence 3446666666665322222345666777778888766 444432 222246788888888876543 111 2234567
Q ss_pred eeccceeEE-CCccccCCC
Q 000803 1258 IARIPCVKI-DDKFIYDPE 1275 (1277)
Q Consensus 1258 ~~~i~~~~i-~~~~~~~~~ 1275 (1277)
|++++.|.+ ++..|...|
T Consensus 275 IaRL~~v~vLNGskIss~e 293 (418)
T KOG2982|consen 275 IARLTKVQVLNGSKISSRE 293 (418)
T ss_pred EeeccceEEecCcccchhh
Confidence 888888865 555665544
No 300
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.91 Score=46.16 Aligned_cols=203 Identities=16% Similarity=0.165 Sum_probs=99.4
Q ss_pred ccccc-hhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC
Q 000803 143 VVFGR-EEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD 214 (1277)
Q Consensus 143 ~~vGr-~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~ 214 (1277)
.+||+ ++.+++|.+.+.-... -+-.+++-+.++|++|.|||-||++|+++. ...|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht---------~c~firvsgs-- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT---------DCTFIRVSGS-- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc---------ceEEEEechH--
Confidence 45554 6666666555422110 011345678899999999999999998743 2345556553
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh-cCceEEEEecCcccccH--------------HhHHhhhccccc--C
Q 000803 215 VLSISKALLESITSATCDLKTVDEVQVQLKKAV-DGKRFLLVLDDVWNEDY--------------SLWVDLKAPFLA--A 277 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~~--~ 277 (1277)
++.++.+. .. ....+.+.-.. ..-+..|+.|.+++... ...-.+...+.. .
T Consensus 216 --elvqk~ig----eg------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 216 --ELVQKYIG----EG------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred --HHHHHHhh----hh------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 22222111 00 11111111111 24567888888754211 112223333322 2
Q ss_pred CCCcEEEEEcccccccccc-----CCCceeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHH
Q 000803 278 APNSKMIITTRNSHVASTM-----GPIDHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKT 352 (1277)
Q Consensus 278 ~~~s~iivTtr~~~v~~~~-----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 352 (1277)
.++-+||+.|..-++.... ...+.++..+-+++.-.++++-+.-.- +-...-.+..+|+++....|.--.+.-+
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vct 362 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCT 362 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhh
Confidence 4567888877654444321 233557777877777777776554211 1111123455555544333333333434
Q ss_pred HHhhh--cCC----ChhhHHHHH
Q 000803 353 LGGLL--RTT----TYDMWDDIL 369 (1277)
Q Consensus 353 ~~~~L--~~~----~~~~w~~~l 369 (1277)
=|++. +.+ +.++++-+.
T Consensus 363 eagm~alrerrvhvtqedfemav 385 (404)
T KOG0728|consen 363 EAGMYALRERRVHVTQEDFEMAV 385 (404)
T ss_pred hhhHHHHHHhhccccHHHHHHHH
Confidence 44432 322 455555443
No 301
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.59 E-value=0.17 Score=51.24 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
++.++|++|+||||++..++...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~ 24 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999987643
No 302
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.57 E-value=0.15 Score=53.60 Aligned_cols=125 Identities=15% Similarity=0.097 Sum_probs=71.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-----CcCHHHHHHHHHHHhcCCCC------CCCcHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-----DFDVLSISKALLESITSATC------DLKTVD 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-----~~~~~~~~~~il~~l~~~~~------~~~~~~ 237 (1277)
-.+++|||..|+||||+|+.+..=... -...+++.-.+ .....+-..++++.++.... ..-+-.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~p-----t~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGG 113 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEP-----TSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGG 113 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCC-----CCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCch
Confidence 368999999999999999999864332 22344443221 12233445566666653321 111222
Q ss_pred HHH-HHHHHhhcCceEEEEecCccccc-HHhHHhhhccccc--CCCCcEEEEEccccccccccCC
Q 000803 238 EVQ-VQLKKAVDGKRFLLVLDDVWNED-YSLWVDLKAPFLA--AAPNSKMIITTRNSHVASTMGP 298 (1277)
Q Consensus 238 ~~~-~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~~s~iivTtr~~~v~~~~~~ 298 (1277)
+.+ -.+.+.+.-++-++|.|.--+.- ...-.++...+.+ ...|-..+..|.+-.++..+..
T Consensus 114 QrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isd 178 (268)
T COG4608 114 QRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISD 178 (268)
T ss_pred hhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcc
Confidence 332 34667788899999999874321 1111222222222 2346778888888777776543
No 303
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.55 E-value=0.048 Score=54.76 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.|.|.+|+||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998863
No 304
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.54 E-value=0.27 Score=54.07 Aligned_cols=53 Identities=23% Similarity=0.221 Sum_probs=36.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
-.++.|.|.+|+||||+|.+++...... +=..++|++.... ..++.+.+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEcccC--HHHHHHHHHHHH
Confidence 3588899999999999999987654322 1235788886653 455555555543
No 305
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.48 E-value=0.25 Score=49.44 Aligned_cols=116 Identities=14% Similarity=0.083 Sum_probs=57.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCc--c---eEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKF--D---VKAWVCVSDDFDV--LSISKALLESITSATCDLKTVDEVQVQ 242 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f--~---~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~ 242 (1277)
.+++|+|..|.|||||++.+..-..... +.. + .+.++ .+.... ..+...+... .......-+...-.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~-G~i~~~~~~~i~~~--~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~ 101 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGS-GRIGMPEGEDLLFL--PQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLA 101 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC-ceEEECCCceEEEE--CCCCccccccHHHHhhcc---CCCCCCHHHHHHHH
Confidence 5899999999999999999987543221 111 1 12222 222211 1222222110 11122222333344
Q ss_pred HHHhhcCceEEEEecCccc-ccHHhHHhhhcccccCCCCcEEEEEccccccc
Q 000803 243 LKKAVDGKRFLLVLDDVWN-EDYSLWVDLKAPFLAAAPNSKMIITTRNSHVA 293 (1277)
Q Consensus 243 l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v~ 293 (1277)
+.+.+..++=++++|.--. -+......+...+... +..||++|.+.+..
T Consensus 102 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~ 151 (166)
T cd03223 102 FARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW 151 (166)
T ss_pred HHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence 5566666777788887532 1111222222222222 46788888876654
No 306
>PRK10867 signal recognition particle protein; Provisional
Probab=94.46 E-value=0.1 Score=60.19 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=21.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 3689999999999999988777653
No 307
>PHA02244 ATPase-like protein
Probab=94.45 E-value=0.22 Score=55.31 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
-|.|+|++|+|||+||++++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999874
No 308
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.059 Score=63.12 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=43.0
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+..-+|.++-+++|++.+....-.+.-+-+++..+|++|||||.+|+.++...
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 45678999999999999876533333456899999999999999999998744
No 309
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.45 E-value=0.072 Score=54.80 Aligned_cols=31 Identities=29% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVED 197 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~ 197 (1277)
.+..+|.++||+|.||||+.+.++.+...+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 4467889999999999999999988765443
No 310
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.25 Score=55.04 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=54.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC-cCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD-FDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..++++++|+.|+||||++..++.....+ . ..+.+++.... .....-++...+.++.......+.+++...+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~---g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l 280 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ---N-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYM 280 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc---C-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHH
Confidence 45899999999999999999887643222 1 24556665332 1224445555555544333344566666656544
Q ss_pred hc-CceEEEEecCccc
Q 000803 247 VD-GKRFLLVLDDVWN 261 (1277)
Q Consensus 247 l~-~kr~LlVlDdv~~ 261 (1277)
-. +..=+|++|-...
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3456788898855
No 311
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.42 E-value=0.15 Score=55.45 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
....+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987643
No 312
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.41 E-value=0.099 Score=50.93 Aligned_cols=116 Identities=18% Similarity=0.151 Sum_probs=59.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC---CcCHHHHHHHHHHHhc-----CCC-CCCCcHH---
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD---DFDVLSISKALLESIT-----SAT-CDLKTVD--- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~---~~~~~~~~~~il~~l~-----~~~-~~~~~~~--- 237 (1277)
..|-|++..|.||||+|....-...-. .+ .+.++..-. .......++.+ ..+. ... ....+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~---g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~ 77 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH---GY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDI 77 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHH
Confidence 468888889999999997665422111 22 334433222 23344433333 1110 000 0001111
Q ss_pred ----HHHHHHHHhhcC-ceEEEEecCcccc---cHHhHHhhhcccccCCCCcEEEEEcccc
Q 000803 238 ----EVQVQLKKAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 238 ----~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
+..+..++.+.. +-=|+|||.+-.. .....+.+...+.....+.-||+|.|+.
T Consensus 78 ~~a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 78 AAAAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 122333444444 4459999998432 1122345555555566688999999985
No 313
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.40 E-value=0.19 Score=58.24 Aligned_cols=88 Identities=19% Similarity=0.157 Sum_probs=46.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCCC---CCcHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATCD---LKTVDEVQVQ 242 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~---~~~~~~~~~~ 242 (1277)
.+.+|.++|.+|+||||+|..++.....+ .+ .+..|+.. .+.. .+.++.+..+++.+... ..+...+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~---g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~ 168 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK---GL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKE 168 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHH
Confidence 35799999999999999999988754322 22 33444432 2222 33444555555432211 1222232222
Q ss_pred HHHhhcCceEEEEecCccc
Q 000803 243 LKKAVDGKRFLLVLDDVWN 261 (1277)
Q Consensus 243 l~~~l~~kr~LlVlDdv~~ 261 (1277)
..+.+.+. =+||+|....
T Consensus 169 al~~~~~~-DvVIIDTAGr 186 (437)
T PRK00771 169 GLEKFKKA-DVIIVDTAGR 186 (437)
T ss_pred HHHHhhcC-CEEEEECCCc
Confidence 22222333 4677777743
No 314
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.38 E-value=0.11 Score=59.92 Aligned_cols=90 Identities=18% Similarity=0.158 Sum_probs=47.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCC---CCCcHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATC---DLKTVDEVQVQ 242 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~---~~~~~~~~~~~ 242 (1277)
.+.++.++|.+|+||||.|..++.....+. .+ .++.|+. +.+.. .+.++......+.+.. ...++.++...
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~--g~-kV~lV~~-D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~ 173 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQ--GK-KVLLVAC-DLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARR 173 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhC--CC-eEEEEec-cccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHH
Confidence 357999999999999999988876432111 12 2333433 22332 2233334444432211 12334444433
Q ss_pred HHHhhcCceE-EEEecCccc
Q 000803 243 LKKAVDGKRF-LLVLDDVWN 261 (1277)
Q Consensus 243 l~~~l~~kr~-LlVlDdv~~ 261 (1277)
..+....+.+ +||+|-...
T Consensus 174 al~~~~~~~~DvVIIDTaGr 193 (428)
T TIGR00959 174 ALEYAKENGFDVVIVDTAGR 193 (428)
T ss_pred HHHHHHhcCCCEEEEeCCCc
Confidence 3333333444 788888753
No 315
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.30 E-value=0.25 Score=53.10 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=19.3
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+..|+|++|+|||+||.+++-.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 6789999999999999988753
No 316
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.29 E-value=0.16 Score=57.07 Aligned_cols=58 Identities=16% Similarity=0.259 Sum_probs=40.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
.-.++-|+|.+|+|||++|.+++....... ++.=..++||+....++..++.+ +++.+
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 357899999999999999999875432211 01114789999988888776654 34444
No 317
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.29 E-value=0.17 Score=50.91 Aligned_cols=115 Identities=17% Similarity=0.157 Sum_probs=58.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc-cccccCC---cc--eEEEEEeCCCcCHHHHHHHHHHHhcCCCC--C----CCc-H
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK-AVEDSGK---FD--VKAWVCVSDDFDVLSISKALLESITSATC--D----LKT-V 236 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~-~~~~~~~---f~--~~~wv~~s~~~~~~~~~~~il~~l~~~~~--~----~~~-~ 236 (1277)
.+++|+|+.|+|||||.+.+..+. .+...+. |. .+.|+ .+ .+.++.++.... + .-+ -
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 689999999999999999886321 1110001 10 12232 11 345555553211 1 111 1
Q ss_pred HHHHHHHHHhhcCc--eEEEEecCccc-ccHHhHHhhhcccccC-CCCcEEEEEcccccccc
Q 000803 237 DEVQVQLKKAVDGK--RFLLVLDDVWN-EDYSLWVDLKAPFLAA-APNSKMIITTRNSHVAS 294 (1277)
Q Consensus 237 ~~~~~~l~~~l~~k--r~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~~s~iivTtr~~~v~~ 294 (1277)
+...-.+.+.+..+ .=++++|.--. -+......+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22223344555555 66788888632 1112222333333221 24778888888876543
No 318
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.28 E-value=0.26 Score=50.94 Aligned_cols=62 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhcCceEEEEecCc-ccccHHhHHhhhcccccC--CCCcEEEEEccccccccccC
Q 000803 236 VDEVQVQLKKAVDGKRFLLVLDDV-WNEDYSLWVDLKAPFLAA--APNSKMIITTRNSHVASTMG 297 (1277)
Q Consensus 236 ~~~~~~~l~~~l~~kr~LlVlDdv-~~~~~~~~~~l~~~l~~~--~~~s~iivTtr~~~v~~~~~ 297 (1277)
-++..-.+.+.+-..+-+|+-|.= .+-+...-..+...+... ..|..||+.|.+..+|..+.
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 344445677788888888998873 111112223333333332 34889999999999998643
No 319
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.25 E-value=1.8 Score=47.63 Aligned_cols=155 Identities=10% Similarity=0.054 Sum_probs=89.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccc------cccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAV------EDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQ 242 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~------~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~ 242 (1277)
..+.-++|..|.||+++|..+.+..-. ..+.|-+...++.... .....+++.+.
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g--------------------~~i~vd~Ir~l 77 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD--------------------KDLSKSEFLSA 77 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC--------------------CcCCHHHHHHH
Confidence 357779999999999999888764311 1111111222222111 11122333322
Q ss_pred HHHh----h-cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-cccccc-cCCCceeecCCCCHHHHHHH
Q 000803 243 LKKA----V-DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SHVAST-MGPIDHYNLEHLLDDDCWSI 315 (1277)
Q Consensus 243 l~~~----l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~v~~~-~~~~~~~~l~~L~~~~~~~L 315 (1277)
+... . .+++=++|+||+..........+...+-....++.+|++|.+ ..+... ......+++.++++++..+.
T Consensus 78 ~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 78 INKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAK 157 (299)
T ss_pred HHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHH
Confidence 2221 1 246778889999777766777777777666667777765543 333332 23346799999999998877
Q ss_pred HHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHHHHH
Q 000803 316 FKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTL 353 (1277)
Q Consensus 316 f~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 353 (1277)
+.... . .++.++.++...+|.=-|+..+
T Consensus 158 l~~~~---~-------~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 158 LLSKN---K-------EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcC---C-------ChhHHHHHHHHcCCHHHHHHHH
Confidence 66431 1 1234555666677633555543
No 320
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.22 E-value=0.18 Score=50.74 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|..|+|||||++.+..-.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 589999999999999999998643
No 321
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.21 E-value=0.19 Score=50.67 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|..|.|||||.+.++.-.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 589999999999999999998753
No 322
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=94.19 E-value=2 Score=47.84 Aligned_cols=49 Identities=16% Similarity=0.100 Sum_probs=33.9
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHhhcCCchHHH
Q 000803 301 HYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAA 350 (1277)
Q Consensus 301 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 350 (1277)
++++++++.+|+..++....-.+--.. ....+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999988774332211 1223455667777779998644
No 323
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.19 E-value=0.23 Score=55.32 Aligned_cols=59 Identities=17% Similarity=0.146 Sum_probs=39.4
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
.-.++.|+|.+|+|||+||.+++...... .++.-..++|++....+...++ .++++.++
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 45799999999999999999886532211 1112235799998887777654 33444443
No 324
>PTZ00301 uridine kinase; Provisional
Probab=94.19 E-value=0.07 Score=55.29 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..+|+|.|.+|.||||||+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 479999999999999999988754
No 325
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.19 E-value=0.54 Score=48.30 Aligned_cols=156 Identities=16% Similarity=0.139 Sum_probs=82.9
Q ss_pred CccccchhhHH---HHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 142 PVVFGREEDKT---KILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 142 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
..+||.++.+. -|++.|.+.+.=+.-.++-|..+|++|.|||.+|+++++...+ .| +-|.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv----p~---l~vka------t~l 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV----PL---LLVKA------TEL 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC----ce---EEech------HHH
Confidence 46889887654 3556665543222245688999999999999999999986543 22 11211 111
Q ss_pred HHHHHHHhcCCCCCCCcHHHHHHHHHHh-hcCceEEEEecCcccccH------------HhHHhhhccccc--CCCCcEE
Q 000803 219 SKALLESITSATCDLKTVDEVQVQLKKA-VDGKRFLLVLDDVWNEDY------------SLWVDLKAPFLA--AAPNSKM 283 (1277)
Q Consensus 219 ~~~il~~l~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~------------~~~~~l~~~l~~--~~~~s~i 283 (1277)
|-+.++ +....++++.+. -+.-++.+.+|.++-... +.-+.++..+.. .+.|-..
T Consensus 188 ---iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvt 257 (368)
T COG1223 188 ---IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVT 257 (368)
T ss_pred ---HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEE
Confidence 111111 111122222222 234689999998743211 011112222211 2345555
Q ss_pred EEEcccccccccc-C--CCceeecCCCCHHHHHHHHHHhh
Q 000803 284 IITTRNSHVASTM-G--PIDHYNLEHLLDDDCWSIFKTHA 320 (1277)
Q Consensus 284 ivTtr~~~v~~~~-~--~~~~~~l~~L~~~~~~~Lf~~~~ 320 (1277)
|..|-..+..... . -...++..--+++|-.+++...+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 6666655544321 1 11346666667888888887776
No 326
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.034 Score=55.61 Aligned_cols=26 Identities=42% Similarity=0.487 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
..+|+|-||-|+||||||+.+.++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 36899999999999999999988653
No 327
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.15 E-value=0.019 Score=34.78 Aligned_cols=22 Identities=32% Similarity=0.637 Sum_probs=18.7
Q ss_pred eeeEEecCCCCCCCCCcCCCCC
Q 000803 554 KLRLLSLQGYYIGELPIPFEDL 575 (1277)
Q Consensus 554 ~Lr~L~L~~~~i~~lp~~~~~l 575 (1277)
+|++|||++|.++.+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 4899999999999999888764
No 328
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.14 E-value=0.13 Score=57.93 Aligned_cols=46 Identities=22% Similarity=0.233 Sum_probs=36.1
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.++|+...+.++.+.+...... -.-|.|+|..|+||+++|+.++..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHh
Confidence 5889999998888887654321 235789999999999999999753
No 329
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.14 E-value=0.19 Score=54.07 Aligned_cols=88 Identities=22% Similarity=0.190 Sum_probs=54.9
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHH-hcCCC-CCCCcHHH---HHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLES-ITSAT-CDLKTVDE---VQV 241 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~-l~~~~-~~~~~~~~---~~~ 241 (1277)
+.-+++=|+|+.|.||||+|.+++-.... .-..++|++.-+.+++..+.. +... +..-. ....+.++ +++
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~aq~----~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~ 132 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVANAQK----PGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAE 132 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHHhhc----CCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHH
Confidence 45689999999999999999998764332 233789999999998876643 3333 21110 11222222 333
Q ss_pred HHHHhhcCceEEEEecCc
Q 000803 242 QLKKAVDGKRFLLVLDDV 259 (1277)
Q Consensus 242 ~l~~~l~~kr~LlVlDdv 259 (1277)
.+.+....+--|+|+|.+
T Consensus 133 ~~~~~~~~~i~LvVVDSv 150 (279)
T COG0468 133 KLARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHHHhccCCCCEEEEecC
Confidence 333333334568888887
No 330
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.13 E-value=0.064 Score=55.50 Aligned_cols=110 Identities=10% Similarity=0.075 Sum_probs=56.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
.++.|+|+.|.||||++..+...... .....+++ +.++... ........+..... ..+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~----~~~~~i~t-~e~~~E~--~~~~~~~~i~q~~v-g~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK----NKTHHILT-IEDPIEF--VHESKRSLINQREV-GLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh----cCCcEEEE-EcCCccc--cccCccceeeeccc-CCCccCHHHHHHHHhcC
Confidence 47899999999999999987764321 22233332 2222110 00000000000000 11123345567777776
Q ss_pred ceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHV 292 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 292 (1277)
..=.|++|.+.+. +.+....... ..|..++.|+....+
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSA 111 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcH
Confidence 7779999999764 3333322222 245667777765444
No 331
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.12 E-value=0.037 Score=45.69 Aligned_cols=22 Identities=36% Similarity=0.652 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+++|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999774
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.09 E-value=0.056 Score=56.47 Aligned_cols=23 Identities=22% Similarity=0.306 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998863
No 333
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.07 E-value=0.14 Score=51.16 Aligned_cols=114 Identities=17% Similarity=0.094 Sum_probs=59.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC--CcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD--DFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
.+++|+|..|.|||||.+.++.-.. .....+++.-.. ..+..+..+ ..++... ....-+...-.+.+.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-----~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral 97 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-----PDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARAL 97 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHH
Confidence 5899999999999999999986432 223444443211 111111111 1111100 1222223333455666
Q ss_pred cCceEEEEecCccc-ccHHhHHhhhcccccC-CCCcEEEEEcccccc
Q 000803 248 DGKRFLLVLDDVWN-EDYSLWVDLKAPFLAA-APNSKMIITTRNSHV 292 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~~s~iivTtr~~~v 292 (1277)
-.++-++++|+--. -+......+...+... ..|..||++|.+.+.
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 66778888898632 1122223333333221 236778888887653
No 334
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.02 E-value=0.087 Score=57.88 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..++.++|+|++|.|||.+|+.+++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el 172 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM 172 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999854
No 335
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.02 E-value=0.09 Score=54.79 Aligned_cols=63 Identities=24% Similarity=0.220 Sum_probs=37.2
Q ss_pred hHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHH
Q 000803 150 DKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSI 218 (1277)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~ 218 (1277)
+..++++.+.... ++..+|+|.|++|+|||||..++....+.+. +=-.++=|+-|.+++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g--~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERG--KRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT----EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcC--CceEEEEECCCCCCCCCcc
Confidence 4556666665432 4568999999999999999988877554332 3233444555555554333
No 336
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.47 Score=48.24 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=36.8
Q ss_pred HHHHHhhcCceEEEEecCcccc-cHHhHHhhhccccc-CCCCcEEEEEccccccccccCCCce
Q 000803 241 VQLKKAVDGKRFLLVLDDVWNE-DYSLWVDLKAPFLA-AAPNSKMIITTRNSHVASTMGPIDH 301 (1277)
Q Consensus 241 ~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~~s~iivTtr~~~v~~~~~~~~~ 301 (1277)
.++-+.+-=++-+.|||..++- +.+....+...+.. ...|+.+++.|..+.++....+...
T Consensus 153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEE
Confidence 3444555556779999998662 22223322222221 2357888888888888887765544
No 337
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.98 E-value=0.27 Score=60.87 Aligned_cols=119 Identities=19% Similarity=0.182 Sum_probs=68.8
Q ss_pred ccccchhhHHHHHHHHhcccccCC--CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADH--ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
.++|.++.+..|.+.+......-. .....+.+.|+.|+|||.||++++.-. - +..+..+-++.+.- ..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~--F--gse~~~IriDmse~------~e 632 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYV--F--GSEENFIRLDMSEF------QE 632 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHH--c--CCccceEEechhhh------hh
Confidence 467777778888777765432111 246788899999999999999886522 1 12334444544432 11
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhhcCceE-EEEecCcccccHHhHHhhhccc
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAVDGKRF-LLVLDDVWNEDYSLWVDLKAPF 274 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l 274 (1277)
+.+.++.+. .-. -.+....+.+.++.++| +|+||||...+......+...+
T Consensus 633 -vskligsp~-gyv-G~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~l 684 (898)
T KOG1051|consen 633 -VSKLIGSPP-GYV-GKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLL 684 (898)
T ss_pred -hhhccCCCc-ccc-cchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHH
Confidence 222223221 111 11222355566666665 7779999888776666544444
No 338
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.98 E-value=0.16 Score=52.20 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.9
Q ss_pred EEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC
Q 000803 172 IPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD 212 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~ 212 (1277)
+.|.|.+|+|||+||.++..... +. =..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~-~~---g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL-AR---GEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH-HC---CCcEEEEECCCC
Confidence 67999999999999998866433 21 135778876543
No 339
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.97 E-value=0.039 Score=52.70 Aligned_cols=21 Identities=48% Similarity=0.702 Sum_probs=19.1
Q ss_pred EEEEccCCCcHHHHHHHHhcc
Q 000803 172 IPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~ 192 (1277)
|+|.|..|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.8 Score=53.15 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=74.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
..=|-++|++|+|||-||++|+|.... .| +.|..+ +++.... + .....+....++.=.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~----NF-----isVKGP----ELlNkYV----G-----ESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGA----NF-----ISVKGP----ELLNKYV----G-----ESERAVRQVFQRARA 602 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccC----ce-----EeecCH----HHHHHHh----h-----hHHHHHHHHHHHhhc
Confidence 345789999999999999999995422 33 444332 1221111 1 111222223333334
Q ss_pred CceEEEEecCccccc-----HHh------HHhhhcccccC--CCCcEEEEEcccccccccc--C---CCceeecCCCCHH
Q 000803 249 GKRFLLVLDDVWNED-----YSL------WVDLKAPFLAA--APNSKMIITTRNSHVASTM--G---PIDHYNLEHLLDD 310 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~-----~~~------~~~l~~~l~~~--~~~s~iivTtr~~~v~~~~--~---~~~~~~l~~L~~~ 310 (1277)
.-+++|+||.++.-- ... ..+++.-+... -.|--||-.|-.+++.... . -....-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 579999999994310 011 22333333222 2466677777666554321 1 2345777888888
Q ss_pred HHHHHHHHhhc
Q 000803 311 DCWSIFKTHAF 321 (1277)
Q Consensus 311 ~~~~Lf~~~~~ 321 (1277)
|-.++++..+-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 88899888774
No 341
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=93.97 E-value=0.49 Score=57.64 Aligned_cols=50 Identities=14% Similarity=0.251 Sum_probs=38.7
Q ss_pred CCCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 140 TEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 140 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
....++|....+.++.+.+..... ...-|.|+|..|+|||++|+.+++..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345789999999998887765432 12346799999999999999998753
No 342
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.97 E-value=0.0025 Score=63.42 Aligned_cols=85 Identities=16% Similarity=0.181 Sum_probs=71.5
Q ss_pred cCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCee
Q 000803 549 LPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHL 628 (1277)
Q Consensus 549 ~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 628 (1277)
+..++..++||++.|.+..+-..|+.+..|..|+++.|.|..+|++++.+..+..+++.+ +..+..|.+++++++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchh
Confidence 345678889999988887777778888888889999999999999999888888888877 4778889888889999888
Q ss_pred eecCcc
Q 000803 629 DIRGAI 634 (1277)
Q Consensus 629 ~l~~~~ 634 (1277)
++.++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887775
No 343
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.95 E-value=0.047 Score=57.15 Aligned_cols=26 Identities=42% Similarity=0.606 Sum_probs=23.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+...+|+|+|++|+||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 45589999999999999999999864
No 344
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.92 E-value=0.35 Score=54.10 Aligned_cols=59 Identities=20% Similarity=0.174 Sum_probs=41.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccc--cccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAV--EDSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~--~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
.-.++-|+|.+|+|||+|+.+++-.... ..++.-..++|++....|+..++.+ +++.++
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcC
Confidence 3478999999999999999888632221 1112234689999999898887654 455554
No 345
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=93.91 E-value=0.29 Score=54.99 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=40.2
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
.-.++-|+|.+|+|||++|.+++....... ++.=..++||+....++..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 357999999999999999999876433210 0011278999998888877654 344444
No 346
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=93.91 E-value=0.16 Score=57.15 Aligned_cols=45 Identities=22% Similarity=0.225 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 144 VFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 144 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777655432 1234789999999999999999764
No 347
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.91 E-value=0.22 Score=56.85 Aligned_cols=86 Identities=19% Similarity=0.189 Sum_probs=50.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~--- 237 (1277)
-..++|+|..|+|||||++.+.+.. ..+.++.+-+.+... +.++..+++..-... ..+.....
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~------~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT------TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLK 235 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC------CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHH
Confidence 3579999999999999999998632 235566666766543 344444443321100 11111111
Q ss_pred --HHHHHHHHhh--cCceEEEEecCcc
Q 000803 238 --EVQVQLKKAV--DGKRFLLVLDDVW 260 (1277)
Q Consensus 238 --~~~~~l~~~l--~~kr~LlVlDdv~ 260 (1277)
...-.+.+++ +++.+|+++||+-
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslT 262 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLT 262 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChH
Confidence 1112233444 5899999999993
No 348
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.90 E-value=0.049 Score=57.17 Aligned_cols=27 Identities=37% Similarity=0.554 Sum_probs=23.5
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+..+|+|+|.+|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999999999999998743
No 349
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.49 Score=55.57 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..+-|-.+|++|+|||++|+++++..
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~ 492 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEA 492 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhh
Confidence 45778899999999999999998843
No 350
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.82 E-value=0.25 Score=52.69 Aligned_cols=92 Identities=16% Similarity=0.228 Sum_probs=54.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 237 (1277)
.-++|.|..|+|||+|+..+.++......++-+.++++-+.+... ..++..++.+.=... ..+.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 467999999999999999988764321112356788888887653 445555544321100 11111111
Q ss_pred -HHHHHHHHhh---cCceEEEEecCccc
Q 000803 238 -EVQVQLKKAV---DGKRFLLVLDDVWN 261 (1277)
Q Consensus 238 -~~~~~l~~~l---~~kr~LlVlDdv~~ 261 (1277)
...-.+.+++ +++++|+++||+-.
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 1122344444 37899999999943
No 351
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.74 E-value=0.42 Score=59.18 Aligned_cols=130 Identities=17% Similarity=0.111 Sum_probs=69.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+-+.++|++|.|||++|+.+...... .| +.++.++ +. .... ......+...+...-..
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~----~f---~~is~~~------~~----~~~~-----g~~~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKV----PF---FTISGSD------FV----EMFV-----GVGASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCC----CE---EEEehHH------hH----Hhhh-----cccHHHHHHHHHHHHhc
Confidence 34889999999999999999874322 23 2222221 10 0010 01122333334444445
Q ss_pred ceEEEEecCccccc----------HHhHHh----hhccccc--CCCCcEEEEEcccccccccc-----CCCceeecCCCC
Q 000803 250 KRFLLVLDDVWNED----------YSLWVD----LKAPFLA--AAPNSKMIITTRNSHVASTM-----GPIDHYNLEHLL 308 (1277)
Q Consensus 250 kr~LlVlDdv~~~~----------~~~~~~----l~~~l~~--~~~~s~iivTtr~~~v~~~~-----~~~~~~~l~~L~ 308 (1277)
.+.+|++|+++... ...+.. +...+.. ...+.-||.||...+..... .-.+.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 68899999985421 011222 2111211 12344555577665433211 123567888888
Q ss_pred HHHHHHHHHHhhc
Q 000803 309 DDDCWSIFKTHAF 321 (1277)
Q Consensus 309 ~~~~~~Lf~~~~~ 321 (1277)
.++-.+++..+..
T Consensus 324 ~~~R~~Il~~~~~ 336 (644)
T PRK10733 324 VRGREQILKVHMR 336 (644)
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877663
No 352
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=93.71 E-value=1.4 Score=46.97 Aligned_cols=95 Identities=16% Similarity=0.239 Sum_probs=65.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhcC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVDG 249 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~~ 249 (1277)
+.+.|+|+.|+|||+-++++++.. ...+.+..++.+....+...+......... ....+....+...+++
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~--------p~~~l~~~~p~~~a~~~i~~i~~~~~~~~~--~~~~d~~~~~~~~l~~ 164 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN--------PNALLIEADPSYTALVLILIICAAAFGATD--GTINDLTERLMIRLRD 164 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC--------ccceeecCChhhHHHHHHHHHHHHHhcccc--hhHHHHHHHHHHHHcc
Confidence 488999999999999999998732 233445566777777777666665554332 2344555566666788
Q ss_pred ceEEEEecCcccccHHhHHhhhccc
Q 000803 250 KRFLLVLDDVWNEDYSLWVDLKAPF 274 (1277)
Q Consensus 250 kr~LlVlDdv~~~~~~~~~~l~~~l 274 (1277)
..-+|+.|....-....++.+....
T Consensus 165 ~~~~iivDEA~~L~~~ale~lr~i~ 189 (297)
T COG2842 165 TVRLIIVDEADRLPYRALEELRRIH 189 (297)
T ss_pred CcceeeeehhhccChHHHHHHHHHH
Confidence 8889999998776556666665443
No 353
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.70 E-value=0.23 Score=62.52 Aligned_cols=133 Identities=16% Similarity=0.148 Sum_probs=71.8
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|+...+..+.+.+..-.. .-.-|.|+|..|+|||++|+.+++.... ..+ ..+.+++..-. . ..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~s~r-~~~---~~v~i~c~~~~-~-~~~~~ 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNLSGR-NNR---RMVKMNCAAMP-A-GLLES 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHhcCC-CCC---CeEEEecccCC-h-hHhhh
Confidence 3689999888888776654321 1245789999999999999999875322 111 23444444321 1 11111
Q ss_pred HHHHhcCCCCCC-Cc-HHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccC-----------CCCcEEEEEcc
Q 000803 222 LLESITSATCDL-KT-VDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAA-----------APNSKMIITTR 288 (1277)
Q Consensus 222 il~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~~s~iivTtr 288 (1277)
.+.+..... .. .......+. ....=.|+||+|..-.......+...+..+ ..+.|||.||.
T Consensus 446 ---~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~ 519 (686)
T PRK15429 446 ---DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATN 519 (686)
T ss_pred ---hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCC
Confidence 111111100 00 001111121 123346899999876666566665544321 13458888886
Q ss_pred cc
Q 000803 289 NS 290 (1277)
Q Consensus 289 ~~ 290 (1277)
..
T Consensus 520 ~~ 521 (686)
T PRK15429 520 RD 521 (686)
T ss_pred CC
Confidence 53
No 354
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=93.62 E-value=0.38 Score=53.89 Aligned_cols=59 Identities=15% Similarity=0.155 Sum_probs=41.1
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
.-.++-|+|.+|+|||+||..++-..... .++.-..++|++....|...++. ++++.++
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~-qia~~~~ 182 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLI-QIAERFG 182 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHH-HHHHHcC
Confidence 35789999999999999998876432211 11122368999999988887764 4555554
No 355
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=93.62 E-value=0.061 Score=53.80 Aligned_cols=91 Identities=15% Similarity=0.106 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKAVD 248 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l~ 248 (1277)
..++.++|+.|+|||.+|+.+...... . .....+-++.+.-......-..+-..++... ..... .
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~--~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~---~~v~~-----~---- 67 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-G--SERPLIRIDMSEYSEGDDVESSVSKLLGSPP---GYVGA-----E---- 67 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--S--SCCEEEEEEGGGHCSHHHCSCHCHHHHHHTT---CHHHH-----H----
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-C--CccchHHHhhhcccccchHHhhhhhhhhccc---ceeec-----c----
Confidence 467889999999999999999774322 1 2334555665543331111111111111100 00000 0
Q ss_pred CceEEEEecCcccccH-----------HhHHhhhcccc
Q 000803 249 GKRFLLVLDDVWNEDY-----------SLWVDLKAPFL 275 (1277)
Q Consensus 249 ~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~ 275 (1277)
..-+|+||+++..+. ..|..+...+-
T Consensus 68 -~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le 104 (171)
T PF07724_consen 68 -EGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLE 104 (171)
T ss_dssp -HHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHH
T ss_pred -chhhhhhHHHhhccccccccchhhHHHHHHHHHHHhc
Confidence 111999999998887 77777776653
No 356
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.60 E-value=0.23 Score=53.59 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=65.1
Q ss_pred hHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCC
Q 000803 150 DKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSA 229 (1277)
Q Consensus 150 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~ 229 (1277)
..+.++..+... +...-++|+|..|.|||||.+.+...... ....+++.-.+- ...+...++......-
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~~-----~~G~i~~~g~~v-~~~d~~~ei~~~~~~~ 165 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILST-----GISQLGLRGKKV-GIVDERSEIAGCVNGV 165 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccCC-----CCceEEECCEEe-ecchhHHHHHHHhccc
Confidence 344555555532 33567999999999999999999875432 222333321110 0000112222222110
Q ss_pred -CC------CC-CcHHHHHHHHHHhhc-CceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccccc
Q 000803 230 -TC------DL-KTVDEVQVQLKKAVD-GKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNSHV 292 (1277)
Q Consensus 230 -~~------~~-~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~~v 292 (1277)
.. +. .+... ..-+...+. ..+=++|+|.+... +.+..+...+ ..|..||+||.+..+
T Consensus 166 ~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~~--e~~~~l~~~~---~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 166 PQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGRE--EDVEALLEAL---HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCcH--HHHHHHHHHH---hCCCEEEEEechhHH
Confidence 00 00 01111 112222222 47789999998653 4455554444 247889999987554
No 357
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.59 E-value=0.1 Score=49.13 Aligned_cols=42 Identities=21% Similarity=0.158 Sum_probs=29.6
Q ss_pred hhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 149 EDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
++.+++.+.+...- ..-.++.+.|.-|+||||+++.++....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 44555555554322 1235899999999999999999987543
No 358
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.54 E-value=0.38 Score=59.04 Aligned_cols=87 Identities=22% Similarity=0.296 Sum_probs=51.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD--VLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
.+|++++|+.|+||||.+..++....... ....+..++. +.+. ..+.++...+.++.+.....+.+++.+.+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~-Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~- 260 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTT-DSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA- 260 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecC-cccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-
Confidence 47999999999999999988876442221 1123445443 2333 3444555555555444333455666555554
Q ss_pred hcCceEEEEecCcc
Q 000803 247 VDGKRFLLVLDDVW 260 (1277)
Q Consensus 247 l~~kr~LlVlDdv~ 260 (1277)
++++ =+|++|-..
T Consensus 261 ~~~~-D~VLIDTAG 273 (767)
T PRK14723 261 LGDK-HLVLIDTVG 273 (767)
T ss_pred hcCC-CEEEEeCCC
Confidence 3333 377777775
No 359
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.54 E-value=0.3 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|..|.|||||++.++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 360
>PRK06547 hypothetical protein; Provisional
Probab=93.51 E-value=0.066 Score=53.58 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
....+|+|.|.+|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999764
No 361
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.51 E-value=0.08 Score=54.76 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=58.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCc---HHHHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKT---VDEVQVQLKK 245 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~---~~~~~~~l~~ 245 (1277)
.+++.|.|+.|.||||+.+.+..-.-...-+.| |.+.. .. ..+...+...+......... ...-..++..
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~-----vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~ 101 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIMAQIGCF-----VPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAY 101 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCC-----cchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHH
Confidence 378999999999999999887542211111111 11111 00 12222233222222111111 1111111222
Q ss_pred hh--cCceEEEEecCcccc-cHHh----HHhhhcccccCCCCcEEEEEccccccccccC
Q 000803 246 AV--DGKRFLLVLDDVWNE-DYSL----WVDLKAPFLAAAPNSKMIITTRNSHVASTMG 297 (1277)
Q Consensus 246 ~l--~~kr~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~~s~iivTtr~~~v~~~~~ 297 (1277)
.+ ..++-|+++|..... +..+ ...+...+.. .|+.+|+||.+.+++..+.
T Consensus 102 il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 102 ILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 22 356789999997331 1111 1122333332 3889999999988776543
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=93.48 E-value=0.15 Score=48.58 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=31.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcC
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITS 228 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~ 228 (1277)
+|.|-|.+|.||||+|+.+.++...+. | +.-.++++|++..+-
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~---------v------saG~iFR~~A~e~gm 44 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKL---------V------SAGTIFREMARERGM 44 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCce---------e------eccHHHHHHHHHcCC
Confidence 689999999999999999988654321 1 233567788777653
No 363
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.43 E-value=0.39 Score=51.38 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=33.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
+.-.++.|.|.+|+|||++|.++..... + .-..++||+.... ..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~---~ge~~lyvs~ee~--~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-Q---MGEPGIYVALEEH--PVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-H---cCCcEEEEEeeCC--HHHHHHH
Confidence 3457999999999999999998755322 2 2346788887653 4444443
No 364
>PRK06762 hypothetical protein; Provisional
Probab=93.40 E-value=0.065 Score=53.87 Aligned_cols=24 Identities=38% Similarity=0.533 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999764
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.39 E-value=0.25 Score=53.74 Aligned_cols=90 Identities=16% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHH--HHHHHHHHHhcCCC---CCCCcHHH-HH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVL--SISKALLESITSAT---CDLKTVDE-VQ 240 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~--~~~~~il~~l~~~~---~~~~~~~~-~~ 240 (1277)
...+++.++|++|+||||++..++.....+ . ..+.+++.. .+... +-++...+..+... ....+... ..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~---g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~ 144 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ---G-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAF 144 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc---C-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHH
Confidence 345899999999999999998887644321 1 245555533 33332 22233334333211 11122222 23
Q ss_pred HHHHHhhcCceEEEEecCccc
Q 000803 241 VQLKKAVDGKRFLLVLDDVWN 261 (1277)
Q Consensus 241 ~~l~~~l~~kr~LlVlDdv~~ 261 (1277)
+.++....+..=++|+|-...
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCC
Confidence 444444444455788888744
No 366
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.39 E-value=0.066 Score=55.34 Aligned_cols=84 Identities=24% Similarity=0.273 Sum_probs=55.5
Q ss_pred CCCCccceeeccCCccccccccccccccCcEEEecCC--cCccccchhhccccCcCeeeecCccccccCCCC---CCCCC
Q 000803 573 EDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNC--SSLIKLPSKIRRLINLCHLDIRGAILLKEMPFG---MKELK 647 (1277)
Q Consensus 573 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~--~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~---i~~L~ 647 (1277)
-.+..|++|++.+..++.+ ..+-.|++|++|+++.| .....++--..++++|++|++++|. ++. +.. +.++.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence 3345566666666555444 23346889999999987 3444555556777999999999997 443 333 45566
Q ss_pred CCcccCceeeCC
Q 000803 648 NLQTLSNFVVGK 659 (1277)
Q Consensus 648 ~L~~L~~~~~~~ 659 (1277)
+|..|+++.+..
T Consensus 117 nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 117 NLKSLDLFNCSV 128 (260)
T ss_pred chhhhhcccCCc
Confidence 677777776654
No 367
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.39 E-value=0.37 Score=51.07 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=30.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKAL 222 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~i 222 (1277)
-.++.|.|..|+||||+|.++..... +. . ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~-~~--g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFL-QN--G-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-hC--C-CcEEEEeCCC--CHHHHHHHH
Confidence 45999999999999999876655332 21 1 3456666333 344555544
No 368
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=93.38 E-value=0.11 Score=54.84 Aligned_cols=62 Identities=27% Similarity=0.222 Sum_probs=42.0
Q ss_pred HHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 152 TKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.+++..+.... ++..+|+|.|.+|+|||||.-.+......+. +=-.++=|+-|.+++--.++
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G--~rVaVlAVDPSSp~TGGsiL 99 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERG--HRVAVLAVDPSSPFTGGSIL 99 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCC--cEEEEEEECCCCCCCCcccc
Confidence 44555554332 5678999999999999999988877654433 44455666667777654444
No 369
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.63 Score=47.70 Aligned_cols=50 Identities=30% Similarity=0.193 Sum_probs=34.6
Q ss_pred ccccchhhHHHHHHHHhcccc-------cCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 143 VVFGREEDKTKILEMVLTDTA-------ADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+-|-.++++++.+...-.-- -.-+.++-|..+|++|.|||-+|++|+|.
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanr 234 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANR 234 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcc
Confidence 455777888887776532210 00133466889999999999999999984
No 370
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.36 E-value=0.21 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=21.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+++|+|..|.|||||.+.+...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999998875
No 371
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.35 E-value=0.36 Score=55.51 Aligned_cols=86 Identities=21% Similarity=0.162 Sum_probs=47.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCC------CCCCCcHH-----
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSA------TCDLKTVD----- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~------~~~~~~~~----- 237 (1277)
-..++|+|..|+|||||++.+..... ....+++..-.+..++.+.....+...... ..+.....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~~-----pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~ 239 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARADA-----FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAP 239 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCC-----CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHH
Confidence 35799999999999999998876432 222344443323344444444333332111 11111111
Q ss_pred HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 ~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 240 ~~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 240 LTATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 1112233333 588999999998
No 372
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.34 E-value=0.35 Score=55.52 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..+++++|..|+||||++..+...
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 479999999999999999887653
No 373
>PTZ00035 Rad51 protein; Provisional
Probab=93.33 E-value=0.56 Score=52.74 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=39.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccccc--ccCCcceEEEEEeCCCcCHHHHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVE--DSGKFDVKAWVCVSDDFDVLSISKALLESIT 227 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~--~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~ 227 (1277)
.-.++.|+|.+|+|||||+.+++-..... .++.-..++|++....++..++ .++++.++
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g 177 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFG 177 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhC
Confidence 45799999999999999999886433211 1112235679998777777664 34444443
No 374
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.28 E-value=0.005 Score=61.36 Aligned_cols=92 Identities=14% Similarity=0.148 Sum_probs=80.1
Q ss_pred CCCCC-cCCCCCCccceeeccCCccccccccccccccCcEEEecCCcCccccchhhccccCcCeeeecCccccccCCCCC
Q 000803 565 IGELP-IPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDIRGAILLKEMPFGM 643 (1277)
Q Consensus 565 i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~l~~~p~~i 643 (1277)
+..+| ..|.....-..||++.|++..+-..++.++.|..||++. +.+..+|..++.+..++++++..|. ....|.+.
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44555 456677889999999999999999999999999999998 5899999999999999999998887 88999999
Q ss_pred CCCCCCcccCceeeC
Q 000803 644 KELKNLQTLSNFVVG 658 (1277)
Q Consensus 644 ~~L~~L~~L~~~~~~ 658 (1277)
+++++++.++.-.+.
T Consensus 108 ~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 108 KKEPHPKKNEQKKTE 122 (326)
T ss_pred cccCCcchhhhccCc
Confidence 999999988765443
No 375
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.26 E-value=0.065 Score=58.18 Aligned_cols=95 Identities=19% Similarity=0.332 Sum_probs=47.2
Q ss_pred HHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCC
Q 000803 152 TKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC 231 (1277)
Q Consensus 152 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~ 231 (1277)
..+++.+.... +-+.++|+.|+|||++++......... .| ...-++.+..-+...+ +++++.-.....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~---~~-~~~~~~~s~~Tts~~~-q~~ie~~l~k~~ 90 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSD---KY-LVITINFSAQTTSNQL-QKIIESKLEKRR 90 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTC---CE-EEEEEES-TTHHHHHH-HHCCCTTECECT
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCcc---cc-ceeEeeccCCCCHHHH-HHHHhhcEEcCC
Confidence 44555555432 456899999999999999987643211 22 2334455544333332 222211110000
Q ss_pred CCCcHHHHHHHHHHhhcCceEEEEecCcccccHHhH
Q 000803 232 DLKTVDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLW 267 (1277)
Q Consensus 232 ~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~ 267 (1277)
. ....--.+|+.++++||+.-...+.|
T Consensus 91 ~---------~~~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 91 G---------RVYGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp T---------EEEEEESSSEEEEEEETTT-S---TT
T ss_pred C---------CCCCCCCCcEEEEEecccCCCCCCCC
Confidence 0 00000146899999999965444433
No 376
>PHA00729 NTP-binding motif containing protein
Probab=93.25 E-value=0.11 Score=53.60 Aligned_cols=25 Identities=44% Similarity=0.526 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+...|.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999774
No 377
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.25 E-value=0.065 Score=55.31 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
++++|+|+.|.|||||.+.+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999988864
No 378
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.25 E-value=0.86 Score=55.07 Aligned_cols=133 Identities=17% Similarity=0.087 Sum_probs=73.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
...+.+-++|++|.|||.||+++++.... +|-.+. .. . ++.... ......+.+.....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~----~fi~v~-----~~----~----l~sk~v-----Gesek~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRS----RFISVK-----GS----E----LLSKWV-----GESEKNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCC----eEEEee-----CH----H----Hhcccc-----chHHHHHHHHHHHH
Confidence 34568999999999999999999984322 342221 11 1 111000 11122233334444
Q ss_pred hcCceEEEEecCccccc-----------HHhHHhhhcccccC--CCCcEEEEEcccccccccc-----CCCceeecCCCC
Q 000803 247 VDGKRFLLVLDDVWNED-----------YSLWVDLKAPFLAA--APNSKMIITTRNSHVASTM-----GPIDHYNLEHLL 308 (1277)
Q Consensus 247 l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~~~--~~~s~iivTtr~~~v~~~~-----~~~~~~~l~~L~ 308 (1277)
.+..+..|++|.++.-- .....+++..+... ..+..||-||-........ .-...+.+.+-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 46788999999994310 01122233333222 2333445555444333211 223568889999
Q ss_pred HHHHHHHHHHhhc
Q 000803 309 DDDCWSIFKTHAF 321 (1277)
Q Consensus 309 ~~~~~~Lf~~~~~ 321 (1277)
.++..+.|..+.-
T Consensus 412 ~~~r~~i~~~~~~ 424 (494)
T COG0464 412 LEERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998884
No 379
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.15 E-value=1.1 Score=48.55 Aligned_cols=132 Identities=10% Similarity=0.081 Sum_probs=72.1
Q ss_pred HHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcccccc----------ccCCcceEEEEEeCCCcCHHHHHH
Q 000803 151 KTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVE----------DSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 151 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~----------~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
-+++...+..+ .-....-++|+.|+||+++|..+....-.. .+.|-|..........
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34555555443 223567799999999999998776533211 1112222111111000
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHHhh-----cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc-ccccc
Q 000803 221 ALLESITSATCDLKTVDEVQVQLKKAV-----DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN-SHVAS 294 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~-~~v~~ 294 (1277)
.....+++. .+.+.+ .+++=++|+|+++....+.+..++..+-.-..++.+|++|.+ ..+..
T Consensus 73 -----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 011233332 222222 355668899999988888899988888766667776666655 34432
Q ss_pred cc-CCCceeecCCC
Q 000803 295 TM-GPIDHYNLEHL 307 (1277)
Q Consensus 295 ~~-~~~~~~~l~~L 307 (1277)
.+ +....+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 21 22244555544
No 380
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.10 E-value=0.33 Score=49.05 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|..|.|||||.+.+..-.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 589999999999999999998643
No 381
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.012 Score=60.40 Aligned_cols=81 Identities=31% Similarity=0.288 Sum_probs=62.0
Q ss_pred hcCCCCeeeEEecCCCCCCCCCcCCCCCCccceeeccCCccccccc--cccccccCcEEEecCCcCccccchh-----hc
Q 000803 548 LLPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIRSLPE--SSCSLLNLEILILRNCSSLIKLPSK-----IR 620 (1277)
Q Consensus 548 ~~~~l~~Lr~L~L~~~~i~~lp~~~~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~l~~lp~~-----i~ 620 (1277)
+..+++.|.||.|+-|.|+.+ ..+.++++|+.|.|+.|.|..+-+ -+.+|++|++|-|..|.-...-+.. +.
T Consensus 36 ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR 114 (388)
T KOG2123|consen 36 ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLR 114 (388)
T ss_pred HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHH
Confidence 467899999999999999988 468899999999999999987743 4578889999999876433333321 34
Q ss_pred cccCcCeee
Q 000803 621 RLINLCHLD 629 (1277)
Q Consensus 621 ~L~~L~~L~ 629 (1277)
-|++|+.||
T Consensus 115 ~LPnLkKLD 123 (388)
T KOG2123|consen 115 VLPNLKKLD 123 (388)
T ss_pred Hcccchhcc
Confidence 566666664
No 382
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.02 E-value=0.29 Score=53.03 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=29.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD 211 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~ 211 (1277)
.-.++.|.|.+|+|||++|.+++.....+ =..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEEecC
Confidence 34799999999999999999976543221 23577888764
No 383
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.02 E-value=0.034 Score=54.74 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+.|.+.|.+|+||||+|++++...
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHH
Confidence 467899999999999999998743
No 384
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.95 E-value=0.23 Score=55.18 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=19.7
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
+++.|++|+||||+++.+.+...
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999986543
No 385
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=92.94 E-value=0.32 Score=54.32 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=48.1
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
-+++++||+.||||||-...++....... .=..+..++... .....+-++...+-++.+-.-..+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~--~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK--KKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc--cCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-
Confidence 58999999999999864443333222111 223466666433 22344445555555555544445555555555432
Q ss_pred cCceEEEEecCccc
Q 000803 248 DGKRFLLVLDDVWN 261 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~ 261 (1277)
++. =+|.+|-+..
T Consensus 280 ~~~-d~ILVDTaGr 292 (407)
T COG1419 280 RDC-DVILVDTAGR 292 (407)
T ss_pred hcC-CEEEEeCCCC
Confidence 233 3555566644
No 386
>PRK03839 putative kinase; Provisional
Probab=92.92 E-value=0.074 Score=54.26 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.|+|++|+||||+|+.+++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998853
No 387
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.91 E-value=0.53 Score=55.00 Aligned_cols=87 Identities=14% Similarity=0.212 Sum_probs=45.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC--HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD--VLSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..|++++|+.|+||||++..++.....+. .-..+..++.. .+. ..+-++...+.++.......+..+....+. .
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~--G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~-~ 331 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH--GASKVALLTTD-SYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALS-E 331 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc--CCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHH-h
Confidence 47999999999999999999986443222 11234455432 332 223333334444332222222222222222 2
Q ss_pred hcCceEEEEecCcc
Q 000803 247 VDGKRFLLVLDDVW 260 (1277)
Q Consensus 247 l~~kr~LlVlDdv~ 260 (1277)
++++ -.+++|-..
T Consensus 332 L~d~-d~VLIDTaG 344 (484)
T PRK06995 332 LRNK-HIVLIDTIG 344 (484)
T ss_pred ccCC-CeEEeCCCC
Confidence 3444 477778875
No 388
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.90 E-value=0.064 Score=30.08 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=5.6
Q ss_pred ccceeeccCCcccccc
Q 000803 577 LLRYLNLADTDIRSLP 592 (1277)
Q Consensus 577 ~Lr~L~L~~~~i~~lp 592 (1277)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444443
No 389
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.89 E-value=0.36 Score=49.87 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=27.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCc--------ceEEEEEeCCC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKF--------DVKAWVCVSDD 212 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f--------~~~~wv~~s~~ 212 (1277)
.++.|+|.+|+||||++.++..+..... .| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~--~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGR--PFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT-----TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCC--ccCCcccccCceEEEEeccCC
Confidence 4889999999999999988876554321 22 35778876665
No 390
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=92.86 E-value=0.14 Score=56.08 Aligned_cols=51 Identities=20% Similarity=0.296 Sum_probs=43.1
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhc
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
...|+|.++.++++++.+.......+..-+|+-++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999998776443335678999999999999999999866
No 391
>PTZ00088 adenylate kinase 1; Provisional
Probab=92.85 E-value=0.084 Score=55.53 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=19.4
Q ss_pred EEEEccCCCcHHHHHHHHhcc
Q 000803 172 IPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~ 192 (1277)
|.|+|++|+||||+|+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999774
No 392
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=92.81 E-value=0.26 Score=55.58 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=37.5
Q ss_pred CccccchhhHHHHHHHHhcc--------cccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 142 PVVFGREEDKTKILEMVLTD--------TAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..++|.++.++.+.-.+... ........+-|.++|++|+|||++|+.+....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l 71 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA 71 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999888887666532 00001224678899999999999999998754
No 393
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=92.76 E-value=0.24 Score=55.94 Aligned_cols=53 Identities=21% Similarity=0.349 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHhcc--------cccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 141 EPVVFGREEDKTKILEMVLTD--------TAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+..++|.++.++.+..++... ..........+.++|++|+|||++|+.+....
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l 74 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 346899999999888777541 00000123678999999999999999997754
No 394
>PRK04040 adenylate kinase; Provisional
Probab=92.75 E-value=0.087 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+|+|+|++|+||||+++.+....
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 689999999999999999997743
No 395
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=92.73 E-value=0.19 Score=55.16 Aligned_cols=84 Identities=20% Similarity=0.149 Sum_probs=49.0
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC-----DLKTVDEVQVQ 242 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~ 242 (1277)
.-+++-|+|..|+||||||.++...... .-..++|++..+.++... ++.++.+.. .....++....
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~----~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~ 122 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQK----QGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWI 122 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH----TT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhc----ccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHH
Confidence 3479999999999999999988764322 234689999988776643 334443211 12234444444
Q ss_pred HHHhhcC-ceEEEEecCcc
Q 000803 243 LKKAVDG-KRFLLVLDDVW 260 (1277)
Q Consensus 243 l~~~l~~-kr~LlVlDdv~ 260 (1277)
+.+.++. ..-++|+|-|-
T Consensus 123 ~e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 123 AEQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHHTTSESEEEEE-CT
T ss_pred HHHHhhcccccEEEEecCc
Confidence 4554543 34588888873
No 396
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.70 E-value=0.47 Score=54.54 Aligned_cols=85 Identities=20% Similarity=0.192 Sum_probs=49.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~--- 237 (1277)
-..++|+|..|+|||||++++++.. ..+.++++-+.+... +.+...+.+..-+.. ..+.....
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~------~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNA------DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc------CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3678999999999999999998743 224555666666543 334443343321110 11111111
Q ss_pred --HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 --EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 --~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 1122233444 589999999999
No 397
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=92.68 E-value=0.22 Score=48.75 Aligned_cols=23 Identities=39% Similarity=0.608 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
|+.|+|.+|+||||+|+.+....
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997643
No 398
>PRK08149 ATP synthase SpaL; Validated
Probab=92.68 E-value=0.38 Score=55.21 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=49.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC-cCHHHHHHHHHHHhcCC-------CCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD-FDVLSISKALLESITSA-------TCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~-~~~~~~~~~il~~l~~~-------~~~~~~~~--- 237 (1277)
-..++|+|..|+|||||++.++... .-+.++...+... .++.++..+.+...... ..+.....
T Consensus 151 Gq~i~I~G~sG~GKTTLl~~i~~~~------~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~ 224 (428)
T PRK08149 151 GQRMGIFASAGCGKTSLMNMLIEHS------EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCN 224 (428)
T ss_pred CCEEEEECCCCCChhHHHHHHhcCC------CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHh
Confidence 3578999999999999999998743 2233344444433 34555555555432211 11111111
Q ss_pred --HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 --EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 --~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
.....+.+++ ++|.+|+++||+
T Consensus 225 a~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 225 AALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999999
No 399
>PLN02348 phosphoribulokinase
Probab=92.67 E-value=0.38 Score=54.04 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
++..+|+|.|.+|+||||+|+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999998743
No 400
>PRK00625 shikimate kinase; Provisional
Probab=92.64 E-value=0.08 Score=53.03 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.++||+|+||||+|+.+.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l 24 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFL 24 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997743
No 401
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.62 E-value=0.32 Score=58.64 Aligned_cols=134 Identities=13% Similarity=0.144 Sum_probs=73.4
Q ss_pred CCccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 141 EPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 141 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
...++|+...++++.+.+..... .-.-|.|+|..|+|||++|+.+++..... .+. .+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-~~p---~v~v~c~~~~~--~~~e 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASPRA-DKP---LVYLNCAALPE--SLAE 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCCcC-CCC---eEEEEcccCCh--HHHH
Confidence 45689999999988888766432 22457899999999999999998753221 112 24455444321 1111
Q ss_pred HHHHHhcCCCCCC-Cc-HHHHHHHHHHhhcCceEEEEecCcccccHHhHHhhhcccccCC-----------CCcEEEEEc
Q 000803 221 ALLESITSATCDL-KT-VDEVQVQLKKAVDGKRFLLVLDDVWNEDYSLWVDLKAPFLAAA-----------PNSKMIITT 287 (1277)
Q Consensus 221 ~il~~l~~~~~~~-~~-~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~~s~iivTt 287 (1277)
..+.+..... .. .......+. ....=.|+||+|..-....+..+...+..+. ...|||.||
T Consensus 256 ---~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t 329 (509)
T PRK05022 256 ---SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAAT 329 (509)
T ss_pred ---HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEec
Confidence 1222211100 00 000000111 1122246899998766666666665543221 245898888
Q ss_pred ccc
Q 000803 288 RNS 290 (1277)
Q Consensus 288 r~~ 290 (1277)
...
T Consensus 330 ~~~ 332 (509)
T PRK05022 330 NRD 332 (509)
T ss_pred CCC
Confidence 653
No 402
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.59 E-value=0.21 Score=53.91 Aligned_cols=24 Identities=33% Similarity=0.379 Sum_probs=18.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+.|.|+|.+|+||||+|+++....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 468999999999999999997743
No 403
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.55 E-value=0.3 Score=48.41 Aligned_cols=115 Identities=21% Similarity=0.171 Sum_probs=58.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc--CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHhh
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF--DVLSISKALLESITSATCDLKTVDEVQVQLKKAV 247 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~l 247 (1277)
.+++|+|..|.|||||++.+...... ....+++...... ...+. ...+.... ....-+...-.+...+
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~-----~~G~i~~~~~~~~~~~~~~~----~~~i~~~~-qlS~G~~~r~~l~~~l 95 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKP-----TSGEILIDGKDIAKLPLEEL----RRRIGYVP-QLSGGQRQRVALARAL 95 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-----CccEEEECCEEcccCCHHHH----HhceEEEe-eCCHHHHHHHHHHHHH
Confidence 68999999999999999999875432 2334444321111 11111 11111100 0111222233345555
Q ss_pred cCceEEEEecCccc-ccHHhHHhhhcccccC-CCCcEEEEEcccccccc
Q 000803 248 DGKRFLLVLDDVWN-EDYSLWVDLKAPFLAA-APNSKMIITTRNSHVAS 294 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~~s~iivTtr~~~v~~ 294 (1277)
..+.=++++|..-. -+......+...+... ..+..++++|.+.+...
T Consensus 96 ~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 96 LLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 66678889998742 1112222333322221 12567888887765443
No 404
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.53 E-value=0.072 Score=48.65 Aligned_cols=22 Identities=55% Similarity=0.676 Sum_probs=18.8
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999987643
No 405
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=92.53 E-value=0.16 Score=64.93 Aligned_cols=199 Identities=17% Similarity=0.170 Sum_probs=96.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC----cCHH--HHHHHHHHHhcCCCCCCCcHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD----FDVL--SISKALLESITSATCDLKTVDEVQVQ 242 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~----~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~ 242 (1277)
..-+.|+|.+|.||||+.+.++-....+....=+..+++..... -... .+..-+...+..... ..+....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~ 297 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEA 297 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHH
Confidence 34789999999999999988764333221111223344433211 0111 122222222222211 1112222
Q ss_pred HHHhhcCceEEEEecCcccccHHhHHhh---hcccccCCCCcEEEEEccccccccccCCCceeecCCCCHHHHHHHHHHh
Q 000803 243 LKKAVDGKRFLLVLDDVWNEDYSLWVDL---KAPFLAAAPNSKMIITTRNSHVASTMGPIDHYNLEHLLDDDCWSIFKTH 319 (1277)
Q Consensus 243 l~~~l~~kr~LlVlDdv~~~~~~~~~~l---~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 319 (1277)
..+.++..++++++|.++......-... ...+.+.-+.++||+|+|....-........+++..+.++.-.......
T Consensus 298 ~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~~~ 377 (824)
T COG5635 298 HQELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFILYQ 377 (824)
T ss_pred HHHHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHHHH
Confidence 2567888999999999866432211111 2223344568999999987654443333444556655555444322211
Q ss_pred --------hcCCCCCCchhhHHHH---HHHHHhhcCCchHHHHHHHhhhcCC------ChhhHHHHHhh
Q 000803 320 --------AFEGRDHNALEISESF---RKKVVGKCGGLPLAAKTLGGLLRTT------TYDMWDDILDS 371 (1277)
Q Consensus 320 --------~~~~~~~~~~~~~~~~---~~~i~~~c~glPLai~~~~~~L~~~------~~~~w~~~l~~ 371 (1277)
.++............+ ...-.+.....|+++.+.+..-... ..+-|+.+++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~ 446 (824)
T COG5635 378 WLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDA 446 (824)
T ss_pred HHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHH
Confidence 1211111100111111 1123344477899998887444311 34455555543
No 406
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.52 E-value=0.097 Score=53.94 Aligned_cols=23 Identities=35% Similarity=0.442 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.++|.|+|++|+||||+|+.+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 57999999999999999999975
No 407
>PRK15453 phosphoribulokinase; Provisional
Probab=92.44 E-value=0.53 Score=50.27 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
+..+|+|.|.+|+||||+|+.+.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~ 27 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEK 27 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 408
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.43 E-value=0.14 Score=49.17 Aligned_cols=39 Identities=28% Similarity=0.387 Sum_probs=27.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD 211 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~ 211 (1277)
++|.|+|..|+|||||++.+.+....+ .+...++.+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~---g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR---GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc---CCceEEEEEccC
Confidence 479999999999999999999865433 455555666555
No 409
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=92.39 E-value=0.31 Score=51.39 Aligned_cols=112 Identities=17% Similarity=0.218 Sum_probs=61.7
Q ss_pred CccccchhhHHHHHHHHhcccc-cCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-ADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~ 220 (1277)
..++|..-..+.++..+.+--. ....++-|++.+|..|+||.-.|+.++++..... -+=+++ +
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~G-l~S~~V---------------~ 145 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGG-LRSPFV---------------H 145 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcc-ccchhH---------------H
Confidence 3566766666666655543211 1125678999999999999999998887543221 000001 1
Q ss_pred HHHHHhcCCCCCCCcH----HHHHHHHHHhhc-CceEEEEecCcccccHHhHHhhh
Q 000803 221 ALLESITSATCDLKTV----DEVQVQLKKAVD-GKRFLLVLDDVWNEDYSLWVDLK 271 (1277)
Q Consensus 221 ~il~~l~~~~~~~~~~----~~~~~~l~~~l~-~kr~LlVlDdv~~~~~~~~~~l~ 271 (1277)
....... -+....+ +++..+++...+ -+|-|+|||+++.......+.+.
T Consensus 146 ~fvat~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lk 199 (344)
T KOG2170|consen 146 HFVATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLK 199 (344)
T ss_pred Hhhhhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHh
Confidence 1111111 1122222 334444444443 37999999999876655444444
No 410
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.37 E-value=0.99 Score=49.78 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=35.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKAL 222 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~i 222 (1277)
..++|.|..|+|||+|++++.+.. +-+.++++-+.+..+ +.+++.++
T Consensus 158 qr~~I~G~~G~GKT~L~~~Iak~~------~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 158 GTAAIPGPFGCGKTVIQQSLSKYS------NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CEEEEECCCCCChHHHHHHHHhCC------CCCEEEEEEeCCChHHHHHHHHHH
Confidence 578999999999999999998843 345788888877543 44444443
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.37 E-value=0.085 Score=53.34 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=20.1
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 412
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=92.36 E-value=0.15 Score=50.16 Aligned_cols=24 Identities=33% Similarity=0.659 Sum_probs=21.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.++.|.|++|+|||||+++++.+.
T Consensus 5 ~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 5 LLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhc
Confidence 689999999999999999998753
No 413
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.34 E-value=0.56 Score=53.38 Aligned_cols=82 Identities=22% Similarity=0.199 Sum_probs=48.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC-----DLKTVDEVQVQL 243 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l 243 (1277)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++. .-+..++.... ...+.+++.+.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~----g~~VlYvs~EEs--~~qi~-~Ra~rlg~~~~~l~l~~e~~le~I~~~i 154 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR----GGKVLYVSGEES--PEQIK-LRADRLGISTENLYLLAETNLEDILASI 154 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEECCcC--HHHHH-HHHHHcCCCcccEEEEccCcHHHHHHHH
Confidence 4699999999999999999988654321 235778776543 33322 22334432211 123344444444
Q ss_pred HHhhcCceEEEEecCcc
Q 000803 244 KKAVDGKRFLLVLDDVW 260 (1277)
Q Consensus 244 ~~~l~~kr~LlVlDdv~ 260 (1277)
.+ .+.-+||+|.+.
T Consensus 155 ~~---~~~~lVVIDSIq 168 (372)
T cd01121 155 EE---LKPDLVIIDSIQ 168 (372)
T ss_pred Hh---cCCcEEEEcchH
Confidence 32 355678888874
No 414
>PTZ00185 ATPase alpha subunit; Provisional
Probab=92.27 E-value=0.67 Score=53.50 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=52.0
Q ss_pred EEEEEEccCCCcHHHHH-HHHhcccccc---ccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCC--------CCCCcHH
Q 000803 170 AVIPIVGMGGIGKTTLA-REVYNDKAVE---DSGKFDVKAWVCVSDDFDVLSISKALLESITSAT--------CDLKTVD 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa-~~~~~~~~~~---~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~--------~~~~~~~ 237 (1277)
.-++|.|..|+|||+|| ..+.+..... ....-+.++++-+.+..+...-+.+.+++-+.-. .+.....
T Consensus 190 QR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~~ 269 (574)
T PTZ00185 190 QRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAGL 269 (574)
T ss_pred CEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHHH
Confidence 56899999999999997 5566654221 0113356788888887654333444444433110 1111111
Q ss_pred H-----HHHHHHHhh--cCceEEEEecCccc
Q 000803 238 E-----VQVQLKKAV--DGKRFLLVLDDVWN 261 (1277)
Q Consensus 238 ~-----~~~~l~~~l--~~kr~LlVlDdv~~ 261 (1277)
+ ..-.+.+++ +++.+|+|+||+-.
T Consensus 270 r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr 300 (574)
T PTZ00185 270 QYLAPYSGVTMGEYFMNRGRHCLCVYDDLSK 300 (574)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEcCchH
Confidence 1 112233333 57899999999943
No 415
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.24 E-value=0.51 Score=54.21 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=46.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHHHHHHHHhcCC-------CCCCCcHHH--
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSISKALLESITSA-------TCDLKTVDE-- 238 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~~-------~~~~~~~~~-- 238 (1277)
-..++|+|..|+|||||++.+..... .+..+.+.+.+ .-.+.++..+.+..-+.. ..+......
T Consensus 140 Gq~i~I~G~sG~GKTtLl~~I~~~~~------~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~ 213 (418)
T TIGR03498 140 GQRLGIFAGSGVGKSTLLSMLARNTD------ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQ 213 (418)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC------CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHH
Confidence 35789999999999999999886432 12222233333 223444444433321110 111111111
Q ss_pred ---HHHHHHHhh--cCceEEEEecCc
Q 000803 239 ---VQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 239 ---~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
..-.+.+++ +++.+|+++||+
T Consensus 214 a~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 214 AAYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 578999999998
No 416
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.24 E-value=0.31 Score=53.91 Aligned_cols=81 Identities=26% Similarity=0.301 Sum_probs=53.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATC-----DLKTVDEVQVQLK 244 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~-----~~~~~~~~~~~l~ 244 (1277)
.++.|-|-+|||||||.-++..+...+ . .+.+|+-.+. ..++ +--++.++.... ...+.+++...+.
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~---~--~vLYVsGEES--~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~ 165 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKR---G--KVLYVSGEES--LQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELE 165 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhc---C--cEEEEeCCcC--HHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHH
Confidence 689999999999999999998865432 1 5777765443 3222 122344443222 2345666665555
Q ss_pred HhhcCceEEEEecCccc
Q 000803 245 KAVDGKRFLLVLDDVWN 261 (1277)
Q Consensus 245 ~~l~~kr~LlVlDdv~~ 261 (1277)
+ .+.-++|+|-+..
T Consensus 166 ~---~~p~lvVIDSIQT 179 (456)
T COG1066 166 Q---EKPDLVVIDSIQT 179 (456)
T ss_pred h---cCCCEEEEeccce
Confidence 4 6888999999854
No 417
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.23 E-value=0.11 Score=50.24 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.5
Q ss_pred EEEEEccCCCcHHHHHHHHh
Q 000803 171 VIPIVGMGGIGKTTLAREVY 190 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~ 190 (1277)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999985
No 418
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.23 E-value=0.11 Score=54.09 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999873
No 419
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.22 E-value=0.089 Score=54.68 Aligned_cols=22 Identities=45% Similarity=0.684 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+|+|.|..|+||||||+.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.19 E-value=0.19 Score=51.04 Aligned_cols=43 Identities=28% Similarity=0.342 Sum_probs=28.9
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHH
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVL 216 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~ 216 (1277)
.|+|+|-||+||||+|..+......+. .| .+.-|+...++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~--~~-~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKG--GY-NVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcC--Cc-eEEEEeCCCCCChH
Confidence 589999999999999988554332222 23 35556666666543
No 421
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.19 E-value=0.11 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|+|+.|+||||+|+.+....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~ 25 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARL 25 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999987643
No 422
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.19 E-value=0.81 Score=50.65 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=47.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCC-CcCHHHHHHHHHHHhcC-------CCCCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSD-DFDVLSISKALLESITS-------ATCDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~-~~~~~~~~~~il~~l~~-------~~~~~~~~~---- 237 (1277)
..++|+|..|+|||||.+.+..... -+..+..-+.. .-++.+.....+..-.. ...+.....
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~~------~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGTT------ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCCC------CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 5789999999999999999987432 23334444443 23444444444433211 111111111
Q ss_pred -HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 -EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 -~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
...-.+.+++ ++|.+|+++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 1112233333 589999999998
No 423
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=92.18 E-value=0.13 Score=49.80 Aligned_cols=26 Identities=42% Similarity=0.423 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
..||-|+|.+|.||||||+++.....
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999987543
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.18 E-value=0.31 Score=61.18 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.++++|+|+.|.||||+.+.+..
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~ 344 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGL 344 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHH
Confidence 47899999999999999988864
No 425
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.17 E-value=1.6 Score=49.34 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
|=--++|++|.|||+++.++++..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 446789999999999999999854
No 426
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=92.14 E-value=0.32 Score=55.02 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccc--cCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVED--SGKFDVKAWVCVSDDFDVLSISKALLESITSATCDLKTVDEVQVQLKK 245 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~--~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~l~~ 245 (1277)
..+=+-|+|..|.|||.|.-.+|+...++. .-||. ....++-+.+..-......+..++ +
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~~va----~ 122 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLPQVA----D 122 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHHHHH----H
Confidence 456789999999999999999998665422 11331 222222222221111222233333 3
Q ss_pred hhcCceEEEEecCcccccHH
Q 000803 246 AVDGKRFLLVLDDVWNEDYS 265 (1277)
Q Consensus 246 ~l~~kr~LlVlDdv~~~~~~ 265 (1277)
.+.++..||.||.+.-.+..
T Consensus 123 ~l~~~~~lLcfDEF~V~Dia 142 (362)
T PF03969_consen 123 ELAKESRLLCFDEFQVTDIA 142 (362)
T ss_pred HHHhcCCEEEEeeeeccchh
Confidence 34556679999998655443
No 427
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.12 E-value=0.56 Score=48.34 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=21.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+++|+|..|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999863
No 428
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.09 E-value=0.54 Score=46.46 Aligned_cols=116 Identities=16% Similarity=0.099 Sum_probs=59.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceE--EEEEeCCCcCHHHHHHHHHHHhc-----CC-CCCCCc------
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVK--AWVCVSDDFDVLSISKALLESIT-----SA-TCDLKT------ 235 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~--~wv~~s~~~~~~~~~~~il~~l~-----~~-~~~~~~------ 235 (1277)
..|-|++..|.||||.|..+.-...-. .+... =|+.-.........+... .+. .. .....+
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~---g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGH---GKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 578888889999999997665432111 22221 133322223344444332 111 00 000011
Q ss_pred -HHHHHHHHHHhhcC-ceEEEEecCcccc---cHHhHHhhhcccccCCCCcEEEEEcccc
Q 000803 236 -VDEVQVQLKKAVDG-KRFLLVLDDVWNE---DYSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 236 -~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~~l~~~~~~s~iivTtr~~ 290 (1277)
..+..+..++.+.. +-=++|||.+-.. .....+.+...+.....+.-||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 11222334455544 4459999998421 1122345555555566678999999985
No 429
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.08 E-value=0.66 Score=49.60 Aligned_cols=83 Identities=25% Similarity=0.269 Sum_probs=47.1
Q ss_pred EEEEEEccCCCcHHHHH-HHHhccccccccCCcceE-EEEEeCCCcC-HHHHHHHHHHHhcC-------CCCCCCcHH--
Q 000803 170 AVIPIVGMGGIGKTTLA-REVYNDKAVEDSGKFDVK-AWVCVSDDFD-VLSISKALLESITS-------ATCDLKTVD-- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~~f~~~-~wv~~s~~~~-~~~~~~~il~~l~~-------~~~~~~~~~-- 237 (1277)
.-++|+|..|+|||+|| ..+.+.. .-+.+ +++-+.+... ..++.+++.+.-.. ...+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~------~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK------GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc------CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 56899999999999996 5565432 22344 6666666543 44555444432110 011111111
Q ss_pred -------HHHHHHHHhhcCceEEEEecCcc
Q 000803 238 -------EVQVQLKKAVDGKRFLLVLDDVW 260 (1277)
Q Consensus 238 -------~~~~~l~~~l~~kr~LlVlDdv~ 260 (1277)
.+++.++. +++.+|+|+||+-
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~DslT 171 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDLS 171 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcChH
Confidence 22333333 5889999999993
No 430
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=92.07 E-value=0.21 Score=48.71 Aligned_cols=36 Identities=19% Similarity=0.410 Sum_probs=28.7
Q ss_pred hhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 149 EDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 149 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+.++++.+++.. ++++++|..|+|||||+..+..+.
T Consensus 24 ~g~~~l~~~l~~---------k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 24 EGIEELKELLKG---------KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp TTHHHHHHHHTT---------SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCHHHHHHHhcC---------CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456677776632 589999999999999999998753
No 431
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=91.96 E-value=0.27 Score=56.94 Aligned_cols=88 Identities=15% Similarity=0.159 Sum_probs=53.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcC-------CCCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITS-------ATCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~-------~~~~~~~~~--- 237 (1277)
-.-++|+|.+|+|||||+.++.+.... . +-+.++++-+.+... +.++..++...-.. ...+.....
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~-~--~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISK-Q--HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-h--CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 357899999999999999888775432 2 457778887776543 44444444432110 011111111
Q ss_pred --HHHHHHHHhh---cCceEEEEecCc
Q 000803 238 --EVQVQLKKAV---DGKRFLLVLDDV 259 (1277)
Q Consensus 238 --~~~~~l~~~l---~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223344555 378999999999
No 432
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.94 E-value=0.14 Score=50.71 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
...+++|+|..|+|||||++.+.....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 457999999999999999999987543
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=91.94 E-value=0.6 Score=53.93 Aligned_cols=88 Identities=20% Similarity=0.251 Sum_probs=52.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESITSA-------TCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 237 (1277)
-.-++|.|.+|+|||||+.++....... +=+.++++-+.+.. .+.++..++...=... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~---~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKE---HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhc---CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3568999999999999999887643321 11356777776654 3445555554321110 11111111
Q ss_pred --HHHHHHHHhh---cCceEEEEecCc
Q 000803 238 --EVQVQLKKAV---DGKRFLLVLDDV 259 (1277)
Q Consensus 238 --~~~~~l~~~l---~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecch
Confidence 1223344555 679999999999
No 434
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=91.92 E-value=0.14 Score=48.96 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.++++|+|.+|+||||+.+.+-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999988755
No 435
>PRK05973 replicative DNA helicase; Provisional
Probab=91.91 E-value=0.54 Score=49.45 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=31.8
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
-.++.|.|.+|+|||++|.++..... +. -..+++++.... ..++...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a-~~---Ge~vlyfSlEes--~~~i~~R 110 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAM-KS---GRTGVFFTLEYT--EQDVRDR 110 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHH-hc---CCeEEEEEEeCC--HHHHHHH
Confidence 36899999999999999998876432 21 234677766554 3444444
No 436
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=91.84 E-value=0.71 Score=53.13 Aligned_cols=86 Identities=24% Similarity=0.299 Sum_probs=48.4
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCCcHHH--
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESITS-------ATCDLKTVDE-- 238 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~~-- 238 (1277)
-..++|+|..|+|||||++.+.+.. +.+..+++.+.+.. .+.+...+....=.. ...+....+.
T Consensus 155 GqrigI~G~sG~GKSTLL~~I~~~~------~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~ 228 (433)
T PRK07594 155 GQRVGIFSAPGVGKSTLLAMLCNAP------DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVR 228 (433)
T ss_pred CCEEEEECCCCCCccHHHHHhcCCC------CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHH
Confidence 3588999999999999999998643 33445555555543 333444443221000 0011111111
Q ss_pred ---HHHHHHHhh--cCceEEEEecCcc
Q 000803 239 ---VQVQLKKAV--DGKRFLLVLDDVW 260 (1277)
Q Consensus 239 ---~~~~l~~~l--~~kr~LlVlDdv~ 260 (1277)
..-.+.+++ +++++|+++||+-
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dslt 255 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSLT 255 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCHH
Confidence 112233444 5889999999993
No 437
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.81 E-value=0.44 Score=54.69 Aligned_cols=26 Identities=35% Similarity=0.371 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
...+|.++|..|+||||+|..++...
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998887643
No 438
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.80 E-value=0.19 Score=53.58 Aligned_cols=85 Identities=20% Similarity=0.228 Sum_probs=49.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCC--------------CC-C-
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSA--------------TC-D- 232 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~--------------~~-~- 232 (1277)
-.++.|.|.+|+|||+||.++......+ .=..++||+..+.. ..+.+.+- .++-+ .. .
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~---~ge~vlyvs~ee~~--~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~ 92 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKN---FGEKVLYVSFEEPP--EELIENMK-SFGWDLEEYEDSGKLKIIDAFPER 92 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHH---HT--EEEEESSS-H--HHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGG
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhh---cCCcEEEEEecCCH--HHHHHHHH-HcCCcHHHHhhcCCEEEEeccccc
Confidence 4789999999999999999876543222 02457888876653 33333322 22210 00 0
Q ss_pred ----CCcHHHHHHHHHHhhcC-ceEEEEecCc
Q 000803 233 ----LKTVDEVQVQLKKAVDG-KRFLLVLDDV 259 (1277)
Q Consensus 233 ----~~~~~~~~~~l~~~l~~-kr~LlVlDdv 259 (1277)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 93 ~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 93 IGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp ST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred ccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 24566666666666543 3468888887
No 439
>PRK06936 type III secretion system ATPase; Provisional
Probab=91.79 E-value=0.68 Score=53.23 Aligned_cols=86 Identities=23% Similarity=0.274 Sum_probs=50.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHHH--
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVDE-- 238 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~~-- 238 (1277)
-..++|.|..|+|||||.+.+++.. .-+.++++-+.+... +.++....+..-+.. ..+......
T Consensus 162 Gq~~~I~G~sG~GKStLl~~Ia~~~------~~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~ 235 (439)
T PRK06936 162 GQRMGIFAAAGGGKSTLLASLIRSA------EVDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAK 235 (439)
T ss_pred CCEEEEECCCCCChHHHHHHHhcCC------CCCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHH
Confidence 3689999999999999999998753 335677777776643 333333322211100 111111111
Q ss_pred ---HHHHHHHhh--cCceEEEEecCcc
Q 000803 239 ---VQVQLKKAV--DGKRFLLVLDDVW 260 (1277)
Q Consensus 239 ---~~~~l~~~l--~~kr~LlVlDdv~ 260 (1277)
..-.+.+++ +++.+|+++||+-
T Consensus 236 a~~~a~tiAEyfrd~G~~Vll~~DslT 262 (439)
T PRK06936 236 AGFVATSIAEYFRDQGKRVLLLMDSVT 262 (439)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchh
Confidence 112233333 5899999999993
No 440
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=91.78 E-value=0.45 Score=45.44 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=28.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEe
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCV 209 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~ 209 (1277)
--+.|+|-||+||+++.+.+|...-.+ .+...+||+.
T Consensus 21 iK~vivGng~VGKssmiqryCkgifTk---dykktIgvdf 57 (246)
T KOG4252|consen 21 IKFVIVGNGSVGKSSMIQRYCKGIFTK---DYKKTIGVDF 57 (246)
T ss_pred EEEEEECCCccchHHHHHHHhcccccc---ccccccchhh
Confidence 346799999999999999999755444 3667788764
No 441
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=91.72 E-value=0.85 Score=52.65 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhcCC-------CCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESITSA-------TCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~-------~~~~~~~~--- 237 (1277)
-..++|+|..|+|||||++.+.... ..+.++...+.... +..++...+...-... ..+.....
T Consensus 168 GqrigI~G~sG~GKSTLl~~I~g~~------~~dv~V~g~Ig~rg~ev~~~~~~~~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 168 GQRLGLFAGTGVGKSVLLGMMTRFT------EADIIVVGLIGERGREVKEFIEHILGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC------CCCEEEEEEeCcCcHhHHHHHHHHhhcCCccEEEEEEECCCCCHHHHHH
Confidence 3579999999999999999997632 22344444444332 3444444443321111 11111111
Q ss_pred --HHHHHHHHhh--cCceEEEEecCcc
Q 000803 238 --EVQVQLKKAV--DGKRFLLVLDDVW 260 (1277)
Q Consensus 238 --~~~~~l~~~l--~~kr~LlVlDdv~ 260 (1277)
.....+.+++ +++.+|+++||+-
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslT 268 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLT 268 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchh
Confidence 1122233444 5899999999993
No 442
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=91.72 E-value=0.11 Score=52.53 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.5
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+|+|.|.+|+||||||+.+....
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l 23 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQL 23 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998743
No 443
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=91.71 E-value=1.2 Score=50.95 Aligned_cols=22 Identities=41% Similarity=0.622 Sum_probs=20.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998865
No 444
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=91.69 E-value=1.6 Score=47.28 Aligned_cols=27 Identities=33% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+..++.|+|.+|+|||||+..+.+..
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567899999999999999999998753
No 445
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.67 E-value=0.65 Score=53.38 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=46.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhcC-------CCCCCCcHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESITS-------ATCDLKTVD--- 237 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~-------~~~~~~~~~--- 237 (1277)
-..++|+|..|+|||||++.+.+.. ..+..+.+.+.... .+.++.......=.. ...+.....
T Consensus 137 Gq~~~I~G~sG~GKTtLl~~I~~~~------~~~~~vi~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~tsd~~~~~r~~ 210 (411)
T TIGR03496 137 GQRMGIFAGSGVGKSTLLGMMARYT------EADVVVVGLIGERGREVKEFIEDILGEEGLARSVVVAATADESPLMRLR 210 (411)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC------CCCEEEEEEEecChHHHHHHHHHHhhCCCcceEEEEEECCCCCHHHHHH
Confidence 3578999999999999999888643 22344445555543 233333333322100 011111111
Q ss_pred --HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 --EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 --~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 211 a~~~a~tiAEyfr~~G~~Vll~~Dsl 236 (411)
T TIGR03496 211 AAFYATAIAEYFRDQGKDVLLLMDSL 236 (411)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeCh
Confidence 1112233333 588999999999
No 446
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=91.62 E-value=0.11 Score=53.25 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 447
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.62 E-value=0.14 Score=52.10 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
...|.|+|++|+||||+|+.++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998743
No 448
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.62 E-value=0.16 Score=51.59 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
..++.|+|++|+||||+|+++....
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998754
No 449
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.60 E-value=0.28 Score=57.10 Aligned_cols=84 Identities=23% Similarity=0.284 Sum_probs=47.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEE-EEEeCCCcCHHHHHHHHHHHhc----CCCCCCCc-----HHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKA-WVCVSDDFDVLSISKALLESIT----SATCDLKT-----VDEV 239 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~-wv~~s~~~~~~~~~~~il~~l~----~~~~~~~~-----~~~~ 239 (1277)
.-..|+|.+|+|||||++.+.+.... . +-++.+ .+-|.+..... .+|-+.+. ....+... ...+
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~-n--~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~~ 490 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITT-N--NPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAEL 490 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhh-c--CCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHHH
Confidence 56789999999999999999885432 1 223333 44455543322 22233331 11112111 1122
Q ss_pred HHHHHHhh--cCceEEEEecCc
Q 000803 240 QVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 240 ~~~l~~~l--~~kr~LlVlDdv 259 (1277)
.-.+.+++ +++.+||++|++
T Consensus 491 ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 491 AIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred HHHHHHHHHHcCCCEEEEEeCc
Confidence 22333444 689999999998
No 450
>PRK04328 hypothetical protein; Provisional
Probab=91.60 E-value=0.58 Score=50.41 Aligned_cols=41 Identities=15% Similarity=0.289 Sum_probs=30.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD 212 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~ 212 (1277)
.-.++.|.|.+|+|||+||.++.... .+ .-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~-~~---~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG-LQ---MGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH-Hh---cCCcEEEEEeeCC
Confidence 34789999999999999999876542 12 2245788887664
No 451
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.57 E-value=0.83 Score=60.73 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
.+=|-++|++|.|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999998653
No 452
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.53 E-value=0.48 Score=52.74 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcccc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
...+++++|++|+||||++..++...+
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~ 139 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYK 139 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 458999999999999999999877543
No 453
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.51 E-value=0.32 Score=44.76 Aligned_cols=51 Identities=18% Similarity=0.276 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcccc-cCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 142 PVVFGREEDKTKILEMVLTDTA-ADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++|..-..+.+++.+..--. ....++-|++..|..|+|||.+|+.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 3577877666666555543211 12266789999999999999988887765
No 454
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=91.50 E-value=0.8 Score=48.85 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=29.6
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD 212 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~ 212 (1277)
.-.++.|.|.+|+||||||.++..... + .-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~-~---~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL-R---DGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH-h---cCCeEEEEEccCC
Confidence 347999999999999999998765322 1 2246788876443
No 455
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=91.49 E-value=0.13 Score=50.71 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.4
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 4789999999999999999763
No 456
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.48 E-value=0.67 Score=53.54 Aligned_cols=86 Identities=20% Similarity=0.216 Sum_probs=47.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCC-------CCCCCcHHH---
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSA-------TCDLKTVDE--- 238 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~-------~~~~~~~~~--- 238 (1277)
-..++|.|..|+|||||++.+....... ..+++..-.+...+.++.+.+...-... ..+......
T Consensus 163 Gq~~~I~G~sG~GKTtLl~~ia~~~~~d-----~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 163 GQRMGIFAPAGVGKSTLMGMFARGTQCD-----VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCC-----eEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 3688999999999999999998643211 1333333233333444444443321100 111111111
Q ss_pred --HHHHHHHhh--cCceEEEEecCc
Q 000803 239 --VQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 239 --~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
..-.+.+++ +++.+|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112233444 578999999998
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.48 E-value=0.15 Score=52.15 Aligned_cols=23 Identities=35% Similarity=0.668 Sum_probs=21.0
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
++++|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 47999999999999999999873
No 458
>PRK06217 hypothetical protein; Validated
Probab=91.44 E-value=0.13 Score=52.45 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=20.6
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998754
No 459
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.43 E-value=0.18 Score=45.31 Aligned_cols=21 Identities=48% Similarity=0.593 Sum_probs=19.6
Q ss_pred EEEEEEccCCCcHHHHHHHHh
Q 000803 170 AVIPIVGMGGIGKTTLAREVY 190 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~ 190 (1277)
.+++|+|+.|.|||||++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999985
No 460
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=91.40 E-value=0.23 Score=60.33 Aligned_cols=74 Identities=14% Similarity=0.088 Sum_probs=52.9
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHH
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKA 221 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~ 221 (1277)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+... .. +++..+|..- ...+....++.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~-~~--~~~~~~~~~n-p~~~~~~~~~~ 98 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLP-KE--ELQDILVYPN-PEDPNNPKIRT 98 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcC-hH--hHHHheEeeC-CCcchHHHHHH
Confidence 46889888888777666432 3688999999999999999987532 22 4577788654 33466677777
Q ss_pred HHHHhc
Q 000803 222 LLESIT 227 (1277)
Q Consensus 222 il~~l~ 227 (1277)
+..+++
T Consensus 99 v~~~~G 104 (637)
T PRK13765 99 VPAGKG 104 (637)
T ss_pred HHHhcC
Confidence 776554
No 461
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=91.37 E-value=1.7 Score=42.79 Aligned_cols=21 Identities=38% Similarity=0.572 Sum_probs=19.3
Q ss_pred EEEEccCCCcHHHHHHHHhcc
Q 000803 172 IPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~ 192 (1277)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999775
No 462
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.34 E-value=0.87 Score=46.98 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
.+++|.|..|.|||||.+.+..-.
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998743
No 463
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=91.33 E-value=1.2 Score=48.13 Aligned_cols=89 Identities=12% Similarity=0.179 Sum_probs=48.0
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCH--HHHHHHHHHHhcCCCCCCCcHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDV--LSISKALLESITSATCDLKTVDEVQVQLKKA 246 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~--~~~~~~il~~l~~~~~~~~~~~~~~~~l~~~ 246 (1277)
..+++++|.+|+||||++..+......+ . ..+.+++.. .+.. ..-++...+.++.+.....+.+++.+.+...
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~---~-~~v~~i~~D-~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l 149 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGK---K-KTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYF 149 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHc---C-CeEEEEecC-CCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHH
Confidence 3689999999999999999886543211 1 234555543 2222 2222233333332222223455555554443
Q ss_pred hc-CceEEEEecCcccc
Q 000803 247 VD-GKRFLLVLDDVWNE 262 (1277)
Q Consensus 247 l~-~kr~LlVlDdv~~~ 262 (1277)
-+ .+.=++++|.....
T Consensus 150 ~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 150 KEEARVDYILIDTAGKN 166 (270)
T ss_pred HhcCCCCEEEEECCCCC
Confidence 22 24568888988553
No 464
>PRK03846 adenylylsulfate kinase; Provisional
Probab=91.31 E-value=0.18 Score=52.25 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.7
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+..+++|+|++|+||||||+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999774
No 465
>PRK05922 type III secretion system ATPase; Validated
Probab=91.29 E-value=1 Score=51.86 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=46.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCc-CHHHHHHHHHHHhcCCC-------CCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDF-DVLSISKALLESITSAT-------CDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~-~~~~~~~~il~~l~~~~-------~~~~~~~---- 237 (1277)
..++|+|..|+|||||.+.+.... ..+...++-+.+.. .....+.+......... .+.....
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~------~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a 231 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS------KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIA 231 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC------CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHH
Confidence 568999999999999999998643 22333443343332 23334433333222111 1111111
Q ss_pred -HHHHHHHHhh--cCceEEEEecCc
Q 000803 238 -EVQVQLKKAV--DGKRFLLVLDDV 259 (1277)
Q Consensus 238 -~~~~~l~~~l--~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 232 ~~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 232 GRAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 1122334444 589999999999
No 466
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.29 E-value=0.16 Score=52.06 Aligned_cols=22 Identities=45% Similarity=0.614 Sum_probs=20.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.+++|+|..|.||||||+.+.-
T Consensus 34 e~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 467
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.27 E-value=0.84 Score=49.19 Aligned_cols=53 Identities=19% Similarity=0.136 Sum_probs=36.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHh
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESI 226 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l 226 (1277)
-.++.|.|.+|+|||++|.++..+..... =..++|++... +..++...++...
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEeCCC--CHHHHHHHHHHHh
Confidence 36899999999999999998876543331 23567777655 4556666665443
No 468
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=91.20 E-value=0.15 Score=51.59 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999764
No 469
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.15 E-value=0.17 Score=47.39 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=19.8
Q ss_pred EEEEccCCCcHHHHHHHHhcccc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 68999999999999999987543
No 470
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.11 E-value=0.49 Score=54.51 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=53.3
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHH----
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVD---- 237 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~---- 237 (1277)
.-++|.|.+|+|||+|+.++.+... +. +-+.++|+-+.+..+ +.++.+++...=... ..+.....
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~-~~--~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMV-GQ--HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHH-hc--CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 5689999999999999999877533 22 346788888877653 444455444321100 11111111
Q ss_pred -HHHHHHHHhh---cCceEEEEecCc
Q 000803 238 -EVQVQLKKAV---DGKRFLLVLDDV 259 (1277)
Q Consensus 238 -~~~~~l~~~l---~~kr~LlVlDdv 259 (1277)
...-.+.+++ +++.+|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223344555 468999999999
No 471
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=91.10 E-value=0.53 Score=46.89 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.4
Q ss_pred EEEEEEccCCCcHHHHHHHH
Q 000803 170 AVIPIVGMGGIGKTTLAREV 189 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~ 189 (1277)
++..|+|+.|.|||++.+.+
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i 41 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAI 41 (162)
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 58999999999999999875
No 472
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=91.10 E-value=0.12 Score=47.69 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=16.1
Q ss_pred EEEEccCCCcHHHHHHHHhcc
Q 000803 172 IPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~ 192 (1277)
|-|+|.+|+||||+|+.++..
T Consensus 2 vLleg~PG~GKT~la~~lA~~ 22 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS 22 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH
T ss_pred EeeECCCccHHHHHHHHHHHH
Confidence 679999999999999999874
No 473
>PRK13949 shikimate kinase; Provisional
Probab=91.08 E-value=0.16 Score=50.92 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
-|.|+|+.|+||||+|+.++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l 25 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL 25 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998743
No 474
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=91.06 E-value=7.1 Score=42.63 Aligned_cols=69 Identities=10% Similarity=0.161 Sum_probs=46.2
Q ss_pred cCceEEEEecCcccccHHhHHhhhcccccCCCCcEEEEEcccc-cccccc-CCCceeecCCCCHHHHHHHHH
Q 000803 248 DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS-HVASTM-GPIDHYNLEHLLDDDCWSIFK 317 (1277)
Q Consensus 248 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~ 317 (1277)
.+++=++|+||++......++.+...+-.-..++.+|.+|.+. .+...+ +....+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3566789999999988888898888887666667777766554 344332 2224566766 6666555554
No 475
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.03 E-value=0.19 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=22.3
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhc
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
...+++.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4568999999999999999999965
No 476
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.01 E-value=1.1 Score=54.57 Aligned_cols=116 Identities=16% Similarity=0.196 Sum_probs=59.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCCCCCC---CcHHHHHHHHHHh
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSATCDL---KTVDEVQVQLKKA 246 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~~~~~---~~~~~~~~~l~~~ 246 (1277)
++..|.|.+|.||||++..+......... .-...+.+.....--..++...+-..+..-.... .....-..-+++.
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~-~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrl 246 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLAD-GERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRL 246 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHH
Confidence 58999999999999999888764321110 1123555555544334444433332221100000 0000001122222
Q ss_pred hc------------Cce---EEEEecCcccccHHhHHhhhcccccCCCCcEEEEEccc
Q 000803 247 VD------------GKR---FLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRN 289 (1277)
Q Consensus 247 l~------------~kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~~s~iivTtr~ 289 (1277)
|. +.+ =++|+|.+.-.+......+...++ +++|+|+.-=.
T Consensus 247 Lg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 247 LGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred hCcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 21 111 289999987666666666666665 46788776443
No 477
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=91.01 E-value=1.8 Score=45.20 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+++|+|..|.|||||++.+..-
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~Gl 57 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFRF 57 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999999754
No 478
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=90.98 E-value=0.15 Score=50.00 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=19.9
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
+|.|+|..|+||||+|+.+...
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~ 22 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKK 22 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999764
No 479
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=90.93 E-value=0.16 Score=48.76 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=19.7
Q ss_pred EEEEEccCCCcHHHHHHHHhcc
Q 000803 171 VIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999999874
No 480
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=90.91 E-value=0.19 Score=51.47 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999774
No 481
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=90.89 E-value=0.53 Score=53.96 Aligned_cols=91 Identities=13% Similarity=0.206 Sum_probs=53.5
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccccc---------ccCCcceEEEEEeCCCcCHHHHHHHHHHHhc-CC-------CCC
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKAVE---------DSGKFDVKAWVCVSDDFDVLSISKALLESIT-SA-------TCD 232 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~~~---------~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~-~~-------~~~ 232 (1277)
.-++|.|-+|+|||||+.++.+..... ..+.=..++++-+.+.....+.+.+.+..-+ .. ..+
T Consensus 142 QRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~atsd 221 (466)
T TIGR01040 142 QKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNLAN 221 (466)
T ss_pred CeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEECCC
Confidence 568999999999999999988754310 0001115677777777555555555554433 11 111
Q ss_pred CCcHHH-----HHHHHHHhhc---CceEEEEecCcc
Q 000803 233 LKTVDE-----VQVQLKKAVD---GKRFLLVLDDVW 260 (1277)
Q Consensus 233 ~~~~~~-----~~~~l~~~l~---~kr~LlVlDdv~ 260 (1277)
.....+ ..-.+.++++ ++.+|+++||+-
T Consensus 222 ~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslT 257 (466)
T TIGR01040 222 DPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMS 257 (466)
T ss_pred CCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChH
Confidence 111111 1223445554 689999999993
No 482
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=90.88 E-value=0.17 Score=47.22 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.7
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
+-|.|.|.+|+||||+|.+++.
T Consensus 8 PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999975
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.86 E-value=1.2 Score=46.74 Aligned_cols=23 Identities=26% Similarity=0.079 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCcHHHHHHHHhc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
.+++.|.|+.|.||||+.+.+.-
T Consensus 31 g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 31 GYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36889999999999999988765
No 484
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.86 E-value=0.65 Score=49.19 Aligned_cols=76 Identities=20% Similarity=0.187 Sum_probs=40.8
Q ss_pred EEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCC--cCHHHHHHHHHHHh----cCCC--CCCCcHHHHHHH
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDD--FDVLSISKALLESI----TSAT--CDLKTVDEVQVQ 242 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~--~~~~~~~~~il~~l----~~~~--~~~~~~~~~~~~ 242 (1277)
+|+|.|..|+||||+|+.+....+... ..++.++...- ++-...-..+..+. .-.. .+..+.+.+.+.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g----~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~ 76 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREG----IHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEEL 76 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcC----CceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHH
Confidence 589999999999999998876432111 12333332221 12122222222221 1112 355667777777
Q ss_pred HHHhhcCc
Q 000803 243 LKKAVDGK 250 (1277)
Q Consensus 243 l~~~l~~k 250 (1277)
++.+.+++
T Consensus 77 l~~L~~g~ 84 (277)
T cd02029 77 FRTYGETG 84 (277)
T ss_pred HHHHHcCC
Confidence 77776654
No 485
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=90.82 E-value=0.94 Score=52.13 Aligned_cols=88 Identities=18% Similarity=0.147 Sum_probs=49.3
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcCC-------CCCCCc-----H
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITSA-------TCDLKT-----V 236 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~~-------~~~~~~-----~ 236 (1277)
-..++|+|..|+|||||++.++..... ...++...-.+...+.+..+..+..-+.. ..+... .
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~~-----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAKA-----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCCC-----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 357899999999999999999875422 11233322223345555555544432111 111111 1
Q ss_pred HHHHHHHHHhh--cCceEEEEecCccc
Q 000803 237 DEVQVQLKKAV--DGKRFLLVLDDVWN 261 (1277)
Q Consensus 237 ~~~~~~l~~~l--~~kr~LlVlDdv~~ 261 (1277)
......+.+++ +++..|+|+||+-.
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 11222333444 47899999999943
No 486
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=90.78 E-value=0.43 Score=54.04 Aligned_cols=62 Identities=26% Similarity=0.270 Sum_probs=44.6
Q ss_pred ccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHH
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSIS 219 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~ 219 (1277)
.++|+++....+...+... +-+.+.|.+|+|||+||+++...... . ..+|.+.......++.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l~~----~---~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARALGL----P---FVRIQCTPDLLPSDLL 86 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHhCC----C---eEEEecCCCCCHHHhc
Confidence 4889888888887777654 35789999999999999999874321 2 3556666665555543
No 487
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=90.77 E-value=0.85 Score=52.48 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhccc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
-..++|+|..|+|||||++.+.+..
T Consensus 137 Gqri~I~G~sG~GKTtLl~~i~~~~ 161 (413)
T TIGR03497 137 GQRVGIFAGSGVGKSTLLGMIARNA 161 (413)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999887743
No 488
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=90.76 E-value=0.19 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.6
Q ss_pred EEEEEEccCCCcHHHHHHHHhcc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
.+++|+|+.|+|||||++.++..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999764
No 489
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.75 E-value=0.52 Score=51.47 Aligned_cols=24 Identities=38% Similarity=0.463 Sum_probs=21.4
Q ss_pred EEEEEEccCCCcHHHHHHHHhccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+-|..+|++|.|||-||++|+...
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc 269 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC 269 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh
Confidence 568899999999999999998754
No 490
>PRK13947 shikimate kinase; Provisional
Probab=90.71 E-value=0.17 Score=51.05 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.3
Q ss_pred EEEEEccCCCcHHHHHHHHhccc
Q 000803 171 VIPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 171 vi~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
-|.|+|++|+||||+|+.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~l 25 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTL 25 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998743
No 491
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=90.70 E-value=0.59 Score=56.41 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=35.2
Q ss_pred CccccchhhHHHHHHHHhcccccCCCCeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++|....+.++++.+...... -.-|.|+|..|+||+++|+.+.+.
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~~----~~pvlI~GE~GtGK~~lA~aiH~~ 250 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAML----DAPLLITGDTGTGKDLLAYACHLR 250 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhCC----CCCEEEECCCCccHHHHHHHHHHh
Confidence 36899998888888776543221 133779999999999999998653
No 492
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=90.70 E-value=0.86 Score=53.08 Aligned_cols=87 Identities=20% Similarity=0.201 Sum_probs=50.5
Q ss_pred eEEEEEEccCCCcHHHHH-HHHhccccccccCCcce-EEEEEeCCCcC-HHHHHHHHHHHhcCC-------CCCCCcHHH
Q 000803 169 FAVIPIVGMGGIGKTTLA-REVYNDKAVEDSGKFDV-KAWVCVSDDFD-VLSISKALLESITSA-------TCDLKTVDE 238 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa-~~~~~~~~~~~~~~f~~-~~wv~~s~~~~-~~~~~~~il~~l~~~-------~~~~~~~~~ 238 (1277)
-.-++|.|..|+|||||| ..+.+.. .-+. ++++-+.+... +.++...+.+.=... ..+.....+
T Consensus 162 GQR~~Ifg~~g~GKT~Lal~~I~~q~------~~dv~~V~~~IGeR~rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r 235 (497)
T TIGR03324 162 GQRELILGDRQTGKTAIAIDTILNQK------GRNVLCIYCAIGQRASAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQ 235 (497)
T ss_pred CCEEEeecCCCCCHHHHHHHHHHHhc------CCCcEEEEEEeccCcHHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHH
Confidence 356899999999999997 4676642 2344 67888877643 444444444321100 111111111
Q ss_pred -----HHHHHHHhh--cCceEEEEecCccc
Q 000803 239 -----VQVQLKKAV--DGKRFLLVLDDVWN 261 (1277)
Q Consensus 239 -----~~~~l~~~l--~~kr~LlVlDdv~~ 261 (1277)
....+.+++ +++.+|+|+||+-.
T Consensus 236 ~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr 265 (497)
T TIGR03324 236 YIAPYAATSIGEHFMEQGRDVLIVYDDLTQ 265 (497)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEcChhH
Confidence 112233444 58899999999943
No 493
>COG4240 Predicted kinase [General function prediction only]
Probab=90.66 E-value=1 Score=45.43 Aligned_cols=82 Identities=16% Similarity=0.086 Sum_probs=52.1
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeCCCcCHHHHHHHHHHHhcC-----CCCCCCcHHHHHH
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFDVLSISKALLESITS-----ATCDLKTVDEVQV 241 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s~~~~~~~~~~~il~~l~~-----~~~~~~~~~~~~~ 241 (1277)
+++-+++|.|+-|.||||++..+++....+. . ..++..+..+-+-...-.-.++++... ......+..-..+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg--~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKG--L-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhc--c-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 5678999999999999999999998776554 2 356666655544333444445555421 1223345555566
Q ss_pred HHHHhhcCce
Q 000803 242 QLKKAVDGKR 251 (1277)
Q Consensus 242 ~l~~~l~~kr 251 (1277)
.+....+++.
T Consensus 125 VLnai~~g~~ 134 (300)
T COG4240 125 VLNAIARGGP 134 (300)
T ss_pred HHHHHhcCCC
Confidence 6666666653
No 494
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=90.65 E-value=0.24 Score=49.33 Aligned_cols=22 Identities=45% Similarity=0.640 Sum_probs=18.9
Q ss_pred EEEEccCCCcHHHHHHHHhccc
Q 000803 172 IPIVGMGGIGKTTLAREVYNDK 193 (1277)
Q Consensus 172 i~I~G~gGiGKTtLa~~~~~~~ 193 (1277)
+.|+|..|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6899999999999999998765
No 495
>PRK14737 gmk guanylate kinase; Provisional
Probab=90.62 E-value=0.23 Score=50.60 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCcHHHHHHHHhcc
Q 000803 168 NFAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 168 ~~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3578999999999999999999764
No 496
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=90.62 E-value=1.5 Score=54.46 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=20.2
Q ss_pred EEEEEEccCCCcHHHHHHHHhc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYN 191 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~ 191 (1277)
..|+|+|..|+||||||+.+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999865
No 497
>PRK00300 gmk guanylate kinase; Provisional
Probab=90.57 E-value=0.2 Score=52.38 Aligned_cols=24 Identities=29% Similarity=0.456 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCcHHHHHHHHhcc
Q 000803 169 FAVIPIVGMGGIGKTTLAREVYND 192 (1277)
Q Consensus 169 ~~vi~I~G~gGiGKTtLa~~~~~~ 192 (1277)
..+++|+|+.|+||||||+.++..
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999874
No 498
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=90.52 E-value=0.44 Score=45.33 Aligned_cols=99 Identities=17% Similarity=0.301 Sum_probs=45.2
Q ss_pred hhcCCCCeeeEEecCCCCCCCCC-cCCCCCCccceeeccCCccccccc-cccccccCcEEEecCCcCccccch-hhcccc
Q 000803 547 DLLPKFKKLRLLSLQGYYIGELP-IPFEDLRLLRYLNLADTDIRSLPE-SSCSLLNLEILILRNCSSLIKLPS-KIRRLI 623 (1277)
Q Consensus 547 ~~~~~l~~Lr~L~L~~~~i~~lp-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~ 623 (1277)
..|..+..|+.+.+.. .+..++ ..|..+.+|+.+.+.++ +..++. .+....+|+.+.+.+ .+..++. .+..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccc
Confidence 3455666666666663 455553 44666667777777664 555544 455555677777754 3444443 345567
Q ss_pred CcCeeeecCccccccCCCC-CCCCCCCccc
Q 000803 624 NLCHLDIRGAILLKEMPFG-MKELKNLQTL 652 (1277)
Q Consensus 624 ~L~~L~l~~~~~l~~~p~~-i~~L~~L~~L 652 (1277)
+|+.+.+..+ +..++.. +.+. +|+.+
T Consensus 82 ~l~~i~~~~~--~~~i~~~~f~~~-~l~~i 108 (129)
T PF13306_consen 82 NLKNIDIPSN--ITEIGSSSFSNC-NLKEI 108 (129)
T ss_dssp TECEEEETTT---BEEHTTTTTT--T--EE
T ss_pred cccccccCcc--ccEEchhhhcCC-CceEE
Confidence 7777776543 3344433 3343 45444
No 499
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=90.49 E-value=1.2 Score=46.16 Aligned_cols=25 Identities=36% Similarity=0.348 Sum_probs=22.1
Q ss_pred EEEEEEccCCCcHHHHHHHHhcccc
Q 000803 170 AVIPIVGMGGIGKTTLAREVYNDKA 194 (1277)
Q Consensus 170 ~vi~I~G~gGiGKTtLa~~~~~~~~ 194 (1277)
.+|+|.|..|+||||+|+.+.+...
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987543
No 500
>PHA02774 E1; Provisional
Probab=90.46 E-value=1 Score=52.92 Aligned_cols=38 Identities=16% Similarity=0.108 Sum_probs=27.8
Q ss_pred CCeEEEEEEccCCCcHHHHHHHHhccccccccCCcceEEEEEeC
Q 000803 167 ANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVS 210 (1277)
Q Consensus 167 ~~~~vi~I~G~gGiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~s 210 (1277)
++-..+.|+|++|.|||.+|..+.+-.. -..+.||+..
T Consensus 432 PKknciv~~GPP~TGKS~fa~sL~~~L~------G~vi~fvN~~ 469 (613)
T PHA02774 432 PKKNCLVIYGPPDTGKSMFCMSLIKFLK------GKVISFVNSK 469 (613)
T ss_pred CcccEEEEECCCCCCHHHHHHHHHHHhC------CCEEEEEECc
Confidence 3446899999999999999999987421 1245667653
Done!