Query 000803
Match_columns 1277
No_of_seqs 487 out of 5170
Neff 10.3
Searched_HMMs 29240
Date Tue Mar 26 17:23:33 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000803.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_572-576//hhsearch_pdb/000803hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 398.5 23.5 318 143-483 129-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 386.6 18.0 622 547-1265 71-766 (768)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 354.9 26.8 314 137-481 119-452 (1249)
4 3rgz_A Protein brassinosteroid 1.0 1 1 338.1 25.3 599 553-1241 50-715 (768)
5 1vt4_I APAF-1 related killer D 1.0 1 1 326.3 19.1 286 142-475 128-437 (1221)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 318.7 34.1 288 954-1260 329-639 (680)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 306.0 29.2 311 545-877 41-364 (680)
8 1z6t_A APAF-1, apoptotic prote 1.0 1 1 301.1 29.5 308 138-479 120-450 (591)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 294.6 23.6 521 553-1258 33-574 (606)
10 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 285.8 30.2 103 1148-1256 466-570 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=398.51 Aligned_cols=318 Identities=16% Similarity=0.238 Sum_probs=258.8
Q ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHC--CCCCCCCCCCCEEEEEEECCCC--CHHHH
Q ss_conf 2135045699999997114325899808999992699909999999962--5244345885338999937876--88999
Q 000803 143 VVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYN--DKAVEDSGKFDVKAWVCVSDDF--DVLSI 218 (1277)
Q Consensus 143 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~~~~--~~~~~~~~~f~~~~wv~~~~~~--~~~~~ 218 (1277)
..|||+.+++++.++|..... ...++++|+||||+||||||+++|+ +.+++. +|+.++||++++.. +...+
T Consensus 129 ~~~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~--~F~~~~wv~vs~~~~~~~~~~ 203 (549)
T 2a5y_B 129 TCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGI--NYDSIVWLKDSGTAPKSTFDL 203 (549)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTT--TBSEEEEEECCCCSTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCCCC---CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHC--CCCCEEEEEECCCCCCCHHHH
T ss_conf 607841799999998725157---896289998699998899999999840698746--699579999789878799999
Q ss_pred HHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHCCC-EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCC
Q ss_conf 9999998207899-------9886899999999830596-3999963755306786876211344499995899980554
Q 000803 219 SKALLESITSATC-------DLKTVDEVQVQLKKAVDGK-RFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTRNS 290 (1277)
Q Consensus 219 ~~~il~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-r~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTtr~~ 290 (1277)
+..++.+++.... +..+.+.+...+++.++++ |+||||||||+.+...|.. .+||+||||||+.
T Consensus 204 ~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~ 275 (549)
T 2a5y_B 204 FTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDV 275 (549)
T ss_dssp HHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBG
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCC--------CCCCEEEEECCCH
T ss_conf 99999998537553455553314699999999999768984899997999714415432--------6998899974977
Q ss_pred CCCCCCCCC-CEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 332445888-6052689997879999999661899999403689999999853099568999997641189942699998
Q 000803 291 HVASTMGPI-DHYNLEHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDMWDDIL 369 (1277)
Q Consensus 291 ~~~~~~~~~-~~~~l~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~~~l 369 (1277)
.++..++.. ..+++++|+.+++|+||.+.++... ..+...+++.+|+++|+|+|||++++|+.++.+. ++|...+
T Consensus 276 ~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l 351 (549)
T 2a5y_B 276 EISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQL 351 (549)
T ss_dssp GGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHH
T ss_pred HHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHH
T ss_conf 99997088973898999898999999998744899---8556899999999995998399999999844344-8999875
Q ss_pred HHCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHH-----------HHCCCCCCCEECHHHHHHHHHHC--CCCCCCCCHHH
Q ss_conf 210358999899379999854039734567975-----------73156999500857799999967--95445897144
Q 000803 370 DSKIWDLPRQSSILPVLRLSYHHLPSHLKRCFA-----------YCAIFPKDFEFDEKELVFLWIAG--GIIRQSSNNEQ 436 (1277)
Q Consensus 370 ~~~~~~~~~~~~i~~~l~~s~~~L~~~~~~~~~-----------~~s~fp~~~~i~~~~l~~~wia~--g~i~~~~~~~~ 436 (1277)
....+... ...+..++.+||+.||++++.||. |||+||+++.|+ +.+|+|+ ||+.....+..
T Consensus 352 ~~~l~~~~-~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~ 426 (549)
T 2a5y_B 352 NNKLESRG-LVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQL 426 (549)
T ss_dssp HHHHHHHC-SSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCC
T ss_pred HHHHHCCC-HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCCC
T ss_conf 78761364-77789897516202267999997526522336743235608997666----53311013550026778999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHHHHHHHHCCCCEE
Q ss_conf 99999999999884887400289-997442338999999983025279
Q 000803 437 LKDLGSQCFHDLVSRSIFQRTGF-GSSKFAMHDLVHALAQLVSGETIF 483 (1277)
Q Consensus 437 ~~~~~~~~~~~L~~~sli~~~~~-~~~~~~~hdli~~~~~~~~~~~~~ 483 (1277)
.+++++ |+++|+++||++.... ...+|+|||++|++|+.++.+++.
T Consensus 427 ~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 427 DDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp THHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999-99999875883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=386.56 Aligned_cols=622 Identities=18% Similarity=0.115 Sum_probs=350.4
Q ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCC-CCCC--CCCCCCCCCEEEECCCCCCCCCCHHH-CCC
Q ss_conf 1028998015995189777878967799886655431687663-2342--21256667399705776765454351-056
Q 000803 547 DLLPKFKKLRLLSLQGYYIGELPIPFEDLRLLRYLNLADTDIR-SLPE--SSCSLLNLEILILRNCSSLIKLPSKI-RRL 622 (1277)
Q Consensus 547 ~~~~~l~~Lr~L~L~~~~l~~lp~~~~~l~~Lr~L~L~~~~i~-~lp~--~~~~L~~L~~L~l~~~~~~~~lp~~i-~~L 622 (1277)
..+..++.|++++++.+.+..+|..|+.+.+|++|+|++|.+. .+|. .++++.+|++|++++|......|..+ .++
T Consensus 71 ~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 150 (768)
T 3rgz_A 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKL 150 (768)
T ss_dssp HHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCC
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCC
T ss_conf 65731680224678688867870332457889989898985787078967872788999898968826774797785638
Q ss_pred CCCCEEEECCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHCC
Q ss_conf 67675642496333418877---888888862283352788887789110001113586046427458899122366111
Q 000803 623 INLCHLDIRGAILLKEMPFG---MKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAAL 699 (1277)
Q Consensus 623 ~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 699 (1277)
++|++|++++|......|.. ++++++|++|++..+......+ +..+.+|+.|. +.-+.+.. .. ..+
T Consensus 151 ~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~--Ls~n~l~~------~~-~~l 219 (768)
T 3rgz_A 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLD--VSSNNFST------GI-PFL 219 (768)
T ss_dssp TTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEE--CCSSCCCS------CC-CBC
T ss_pred CCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEE--CCCCCCCC------CC-CCC
T ss_conf 899989897983588587155664358988989897880346578--45478689898--92882788------77-111
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCC-CCCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 468877804899668999992247899761047895476489995408999-9955488889980099880889999899
Q 000803 700 CEKLNLEALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGAR-FPLWIGDPLFSKMNVLELDDCWNCTSLP 778 (1277)
Q Consensus 700 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~~~~L~~L~l~~~~~~~~l~ 778 (1277)
..+.+|+.|+++.+... ......+..+++|+.|++.++.... .|.+ .+++|+.|++++|...+.+|
T Consensus 220 ~~l~~L~~L~Ls~n~l~---------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip 286 (768)
T 3rgz_A 220 GDCSALQHLDISGNKLS---------GDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIP 286 (768)
T ss_dssp TTCCSCCEEECCSSCCC---------SCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCC
T ss_pred CCCCCCCEEECCCCCCC---------CCCCHHHHCCCCCCEEECCCCCCCCCCCCC----CCCCCCEEECCCCCCCCCCC
T ss_conf 26999998979488587---------816577744888898989888665716724----36878989791785577258
Q ss_pred -CCCC-CCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC
Q ss_conf -9999-78876466625888238564223464467786545365024765332255555563245588653886604879
Q 000803 779 -SLGL-LSSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPE 856 (1277)
Q Consensus 779 -~l~~-l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 856 (1277)
.+.. +++|+.|++.++ .+.......++ .+++|+.|.+.++.-........ +..+++|+.|++++| .
T Consensus 287 ~~~~~~~~~L~~L~Ls~n-~l~~~~p~~~~-----~l~~L~~L~L~~n~l~~~ip~~~-----l~~l~~L~~L~Ls~n-~ 354 (768)
T 3rgz_A 287 DFLSGACDTLTGLDLSGN-HFYGAVPPFFG-----SCSLLESLALSSNNFSGELPMDT-----LLKMRGLKVLDLSFN-E 354 (768)
T ss_dssp CCSCTTCTTCSEEECCSS-EEEECCCGGGG-----GCTTCCEEECCSSEEEEECCHHH-----HTTCTTCCEEECCSS-E
T ss_pred HHHHHHCCCCCEEECCCC-CCCCCCCHHHH-----CCCCCCEEECCCCCCCCCCCHHH-----HHCCCCCCEEECCCC-C
T ss_conf 888844686889989689-67784236775-----58776677897885257379788-----724888878848478-4
Q ss_pred CCCCCCCCC---C-CCCEEEEECCCCCCCCCCC-----CCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCC
Q ss_conf 866899989---9-9658998235563212678-----985128981456531134677312121001456410003788
Q 000803 857 LSGKVPELL---P-SLKTLVVSKCQKLKFSLSS-----YPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCE 927 (1277)
Q Consensus 857 l~~~~p~~l---~-~L~~L~i~~~~~l~~~~~~-----~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~ 927 (1277)
+.+.+|..+ + +|+.|++++|......... +++|+.|.+.+|.... ..+..+..
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~---~~p~~l~~--------------- 416 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG---KIPPTLSN--------------- 416 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEE---ECCGGGGG---------------
T ss_pred CCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCC---CCCHHHHC---------------
T ss_conf 376230989863227719986278747876766653324776189897784654---24877756---------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 84224467666420034444222366862489981698768890433033665661575113895322488877754630
Q 000803 928 GMLHASRTSSSLLQTETISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSL 1007 (1277)
Q Consensus 928 ~~~~~~~~~L~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L 1007 (1277)
.++|+.|++++|.....+|. .+..+++|+.|++++|.... ..|..+..+
T Consensus 417 -------------------------l~~L~~L~Ls~N~l~~~~p~-~l~~l~~L~~L~L~~n~l~~-----~~p~~~~~l 465 (768)
T 3rgz_A 417 -------------------------CSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEG-----EIPQELMYV 465 (768)
T ss_dssp -------------------------CTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCCS-----CCCGGGGGC
T ss_pred -------------------------CCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCC-----CCCHHHCCC
T ss_conf -------------------------89879898958846685467-77449988989897881547-----189788287
Q ss_pred EECCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCCCCEEEECCCCCCCCCCC-CCCCCCCC
Q ss_conf 641455542000289997323476762123570665057886522322---35553777313588422345-68668644
Q 000803 1008 QIENLTLESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKG---LHKLRSIYIKKCPSLVSLAE-KGLPNTIS 1083 (1277)
Q Consensus 1008 ~l~~~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ip~~---l~~L~~L~l~~c~~l~~l~~-~~~~~~L~ 1083 (1277)
. +|+.|++++|...+.+|..+..+++|+.|++++|.....+|.. +++|+.|++++|.-...++. ....++|+
T Consensus 466 ~----~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 466 K----TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp T----TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred C----CCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCC
T ss_conf 7----732999019951375887881699899897539951896876885689999898978943374887770889899
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCC---------------------------------------------C
Q ss_conf 8986036562347577899998577842379986---------------------------------------------3
Q 000803 1084 HVTISYCEKLDALPNGMHKLQSLQYLKIKECPSI---------------------------------------------L 1118 (1277)
Q Consensus 1084 ~L~l~~~~~l~~lp~~l~~l~~L~~L~l~~c~~l---------------------------------------------~ 1118 (1277)
.|++++|.....+|..+..+..+..+.+..+..+ .
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEC
T ss_conf 89898884688279578604212232013454211113444322223322210013556323200232110011331004
Q ss_pred -CCCC-CCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCC
Q ss_conf -3457-79889976388705448531034654101346875510015347876580266422687543334414466665
Q 000803 1119 -SFSE-EGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKLK 1196 (1277)
Q Consensus 1119 -~~~~-~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 1196 (1277)
.+|. -...++|+.|++++ +.+....+..+.++++|+.|++++|.....+|.+. ..+++|+.|++++|.-..
T Consensus 622 g~~~~~~~~l~~L~~LdLs~----N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l---~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSY----NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV---GDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp EECCCSCSSSBCCCEEECCS----SCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG---GGCTTCCEEECCSSCCEE
T ss_pred CCCCHHHHCCCCCCEEECCC----CCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCEEECCCCCCCC
T ss_conf 62743340335665797858----80155587788414157878486880388789678---477789989897880238
Q ss_pred CCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHH----HHHCCCCCCCCCCEECCCEEE
Q ss_conf 357368888888780200379898878999987765501024790069----976017998765210123269
Q 000803 1197 YLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGLPSSLLSLEIKNCPKLR----KQCKRDRGKEWSKIARIPCVK 1265 (1277)
Q Consensus 1197 ~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~i~~c~~l~----~~~~~~~~~~~~~~~~~~~~~ 1265 (1277)
.+| ..+..+++|+.|++++|+.-..+|..+.+.++....+.+||.|+ ..|....+++|++++|++.++
T Consensus 695 ~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 695 RIP-QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHH 766 (768)
T ss_dssp CCC-GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC--------------
T ss_pred CCC-HHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 688-677578878978796881556089960102489777569832108877678887668889888765667
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=354.88 Aligned_cols=314 Identities=21% Similarity=0.301 Sum_probs=245.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCC--
Q ss_conf 999987213504569999999711432589980899999269990999999996252443458853389999378768--
Q 000803 137 SVPTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDVKAWVCVSDDFD-- 214 (1277)
Q Consensus 137 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~~~f~~~~wv~~~~~~~-- 214 (1277)
.|+....|+||+++++++.+.|.... +..++++|+||||+||||||+++|++.+......++.++|+++++..+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCCCCEECCHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHH
T ss_conf 79998641257999999999986135----88777999918988888999998607567886278817999978857267
Q ss_pred HHHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHCCC--EEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 89999999998207899----9886899999999830596--39999637553067868762113444999958999805
Q 000803 215 VLSISKALLESITSATC----DLKTVDEVQVQLKKAVDGK--RFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITTR 288 (1277)
Q Consensus 215 ~~~~~~~il~~l~~~~~----~~~~~~~~~~~l~~~l~~k--r~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTtr 288 (1277)
....+..++..+..... .....+.+...++..+.++ |+||||||+|+. ..|..+ .+|++||+|||
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR 265 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEES
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHH-------CCCCEEEEECC
T ss_conf 999999999986553033347887778999999999735678789999567997--788763-------68978999927
Q ss_pred CCCCCCC-CCCCCEEECCC-CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHH
Q ss_conf 5433244-58886052689-997879999999661899999403689999999853099568999997641189942699
Q 000803 289 NSHVAST-MGPIDHYNLEH-LLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDMWD 366 (1277)
Q Consensus 289 ~~~~~~~-~~~~~~~~l~~-l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~w~ 366 (1277)
++.++.. ......+.+++ |+.+|+++||...++... +...+.+++|+++|+|+||||+++|+.|+.+. ..|.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~ 339 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWA 339 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHH
T ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHH
T ss_conf 78998763488437982588887889999998657981-----34838899999984997799999999862480-5799
Q ss_pred HHHHHC---CCCCC-C-----CCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 998210---35899-9-----89937999985403973456797573156999500857799999967954458971449
Q 000803 367 DILDSK---IWDLP-R-----QSSILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQL 437 (1277)
Q Consensus 367 ~~l~~~---~~~~~-~-----~~~i~~~l~~s~~~L~~~~~~~~~~~s~fp~~~~i~~~~l~~~wia~g~i~~~~~~~~~ 437 (1277)
..++.. .+... . ...+..++.+||+.|++++|+||+|||+||+++.|+...++.+|.++
T Consensus 340 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------ 407 (1249)
T 3sfz_A 340 YYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------ 407 (1249)
T ss_dssp HHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC------------
T ss_conf 99999865044303465564467799999989986799999999972813799751899999885898------------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CCCCCHHHHHHHHHHHHCCCC
Q ss_conf 99999999998848874002899-974423389999999830252
Q 000803 438 KDLGSQCFHDLVSRSIFQRTGFG-SSKFAMHDLVHALAQLVSGET 481 (1277)
Q Consensus 438 ~~~~~~~~~~L~~~sli~~~~~~-~~~~~~hdli~~~~~~~~~~~ 481 (1277)
++.++.++++|+++||++....+ ..+|+|||++|++++..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHH
T ss_conf 889999999997446338963798118996689999987450678
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=338.09 Aligned_cols=599 Identities=17% Similarity=0.124 Sum_probs=277.9
Q ss_pred CEEEEEECCCCCCCC----CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCH--HHCCCCCCC
Q ss_conf 801599518977787----89677998866554316876632342212566673997057767654543--510566767
Q 000803 553 KKLRLLSLQGYYIGE----LPIPFEDLRLLRYLNLADTDIRSLPESSCSLLNLEILILRNCSSLIKLPS--KIRRLINLC 626 (1277)
Q Consensus 553 ~~Lr~L~L~~~~l~~----lp~~~~~l~~Lr~L~L~~~~i~~lp~~~~~L~~L~~L~l~~~~~~~~lp~--~i~~L~~L~ 626 (1277)
.+++.|+|+++.+.. +|..+..+.+|++++++.+.+..+|..++.+++|++|++++|.....+|. .++++++|+
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~ 129 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLK 129 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCC
T ss_pred CCEEEEECCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCC
T ss_conf 92789877899867755766965731680224678688867870332457889989898985787078967872788999
Q ss_pred EEEECCCCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC---HHCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCC
Q ss_conf 56424963334188778-88888862283352788887789---110001113586046427458899122366111468
Q 000803 627 HLDIRGAILLKEMPFGM-KELKNLQTLSNFVVGKGGETASG---LEDLKILKFLSGELCISGLQNVNDSKNAREAALCEK 702 (1277)
Q Consensus 627 ~L~l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~---l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~ 702 (1277)
+|++++|.....+|..+ .++++|++|++..+......+.. +..+..|+.|. +.-+.+... .....+
T Consensus 130 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~--Ls~n~l~~~--------~~~~~l 199 (768)
T 3rgz_A 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLA--ISGNKISGD--------VDVSRC 199 (768)
T ss_dssp EEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEE--CCSSEEESC--------CBCTTC
T ss_pred EEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEE--CCCCCCCCC--------CCCCCC
T ss_conf 8989688267747977856388999898979835885871556643589889898--978803465--------784547
Q ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCC
Q ss_conf 8778048996689999922478997610478954764899954089999955488889980099880889999899-999
Q 000803 703 LNLEALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARFPLWIGDPLFSKMNVLELDDCWNCTSLP-SLG 781 (1277)
Q Consensus 703 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~l~~~~~~~~l~-~l~ 781 (1277)
.+|+.|++ .++.....+..+.. +++|+.|++++|...+.+| .++
T Consensus 200 ~~L~~L~L---------------------------------s~n~l~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~l~ 244 (768)
T 3rgz_A 200 VNLEFLDV---------------------------------SSNNFSTGIPFLGD--CSALQHLDISGNKLSGDFSRAIS 244 (768)
T ss_dssp TTCCEEEC---------------------------------CSSCCCSCCCBCTT--CCSCCEEECCSSCCCSCHHHHTT
T ss_pred CCCCEEEC---------------------------------CCCCCCCCCCCCCC--CCCCCEEECCCCCCCCCCCHHHH
T ss_conf 86898989---------------------------------28827887711126--99999897948858781657774
Q ss_pred CCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCC
Q ss_conf 97887646662588823856422346446778654536502476533225555556324558865388660487986689
Q 000803 782 LLSSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKV 861 (1277)
Q Consensus 782 ~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~ 861 (1277)
.+++|+.|.++++ .+...... ..+++|+.|.+.++.-.......+.. .+++|+.|++++| .+.+.+
T Consensus 245 ~l~~L~~L~Ls~n-~l~~~~~~-------~~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n-~l~~~~ 310 (768)
T 3rgz_A 245 TCTELKLLNISSN-QFVGPIPP-------LPLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGN-HFYGAV 310 (768)
T ss_dssp TCSSCCEEECCSS-CCEESCCC-------CCCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSS-EEEECC
T ss_pred CCCCCCEEECCCC-CCCCCCCC-------CCCCCCCEEECCCCCCCCCCCHHHHH-----HCCCCCEEECCCC-CCCCCC
T ss_conf 4888898989888-66571672-------43687898979178557725888884-----4686889989689-677842
Q ss_pred CC---CCCCCCEEEEECCCCC-CCC---CCCCCCCEEEEECCCCCCCCCCCCCHHHHHHH-CCCCCCEEECCCCCCCCCC
Q ss_conf 99---8999658998235563-212---67898512898145653113467731212100-1456410003788842244
Q 000803 862 PE---LLPSLKTLVVSKCQKL-KFS---LSSYPMLCRLEADECKELLCRTPIDSKLIKSM-TISNSSLDINGCEGMLHAS 933 (1277)
Q Consensus 862 p~---~l~~L~~L~i~~~~~l-~~~---~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~-~l~~~~L~~~~~~~~~~~~ 933 (1277)
|. .+++|+.|++.+|... ... +..+++|+.|.+.++... +..+..+.... .+...++..+...+..+..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~---~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS---GELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE---ECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred CHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC---CCCCHHHHHHHCCCCEEECCCCCCCCCCCHH
T ss_conf 3677558776677897885257379788724888878848478437---6230989863227719986278747876766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 67666420034444222366862489981698768890433033665661575113895322488877754630641455
Q 000803 934 RTSSSLLQTETISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLT 1013 (1277)
Q Consensus 934 ~~~L~~l~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~ 1013 (1277)
+ .....++|++|++++|.....+|. .+..+++|+.|++++|... +..|..+..+. +
T Consensus 388 ~--------------~~~~~~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~N~l~-----~~~p~~l~~l~----~ 443 (768)
T 3rgz_A 388 L--------------CQNPKNTLQELYLQNNGFTGKIPP-TLSNCSELVSLHLSFNYLS-----GTIPSSLGSLS----K 443 (768)
T ss_dssp T--------------TCSTTCCCCEEECCSSEEEEECCG-GGGGCTTCCEEECCSSEEE-----SCCCGGGGGCT----T
T ss_pred H--------------HHCCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCC-----CCCCHHHHCCC----C
T ss_conf 6--------------533247761898977846542487-7756898798989588466-----85467774499----8
Q ss_pred CCCEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCC---CCCCCEEEECCCCCCCCCCC-CCCCCCCCEEEEEC
Q ss_conf 542000289997323476762123570665057886522322---35553777313588422345-68668644898603
Q 000803 1014 LESLKIRDCPQLTCLSSGIHLLEALEDLHIRNCPKLESIPKG---LHKLRSIYIKKCPSLVSLAE-KGLPNTISHVTISY 1089 (1277)
Q Consensus 1014 L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~l~~ip~~---l~~L~~L~l~~c~~l~~l~~-~~~~~~L~~L~l~~ 1089 (1277)
|+.|++++|...+.+|..+..+++|+.|++++|.....+|.. +++|+.|++++|.-...++. ....++|+.|++++
T Consensus 444 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 444 LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN 523 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCC
T ss_conf 89898978815471897882877732999019951375887881699899897539951896876885689999898978
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC-CCCCE---------EEECCC----------------------
Q ss_conf 6562347577899998577842379986334577988-99763---------887054----------------------
Q 000803 1090 CEKLDALPNGMHKLQSLQYLKIKECPSILSFSEEGFP-TNLKL---------IRIGGG---------------------- 1137 (1277)
Q Consensus 1090 ~~~l~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~---------L~l~~~---------------------- 1137 (1277)
|...+.+|..+..+++|+.|++++|+....+|...+. ..+.. ..+...
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ 603 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG
T ss_pred CCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 94337488777088989989898884688279578604212232013454211113444322223322210013556323
Q ss_pred -----------CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCC
Q ss_conf -----------485310346541013468755100153478765802664226875433344144666653573688888
Q 000803 1138 -----------VDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKLKYLSSMGFQSL 1206 (1277)
Q Consensus 1138 -----------~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l 1206 (1277)
...+.+....+..+..+++|+.|++++|.....+|.+. ..+++|+.|++.+|.-...+| ..+..+
T Consensus 604 ~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l---~~l~~L~~L~Ls~N~l~g~ip-~~l~~L 679 (768)
T 3rgz_A 604 LNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI---GSMPYLFILNLGHNDISGSIP-DEVGDL 679 (768)
T ss_dssp GGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGG---GGCTTCCEEECCSSCCCSCCC-GGGGGC
T ss_pred HHCCCCCCCCCCCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH---HCCCCCCEEECCCCCCCCCCC-HHHHCC
T ss_conf 2002321100113310046274334033566579785880155587788---414157878486880388789-678477
Q ss_pred CCCCCEECCCCCCCCCCCCC-CCCCCCCEEECCCCH
Q ss_conf 88780200379898878999-987765501024790
Q 000803 1207 TSLEHLLIEDCPNLTSFPEV-GLPSSLLSLEIKNCP 1241 (1277)
Q Consensus 1207 ~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~i~~c~ 1241 (1277)
++|+.|++++|..-..+|.. ...++|+.|++++|+
T Consensus 680 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 789989897880238688677578878978796881
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=326.29 Aligned_cols=286 Identities=18% Similarity=0.236 Sum_probs=224.9
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE-EEEEEECCCCCHHHHHH
Q ss_conf 72135045699999997114325899808999992699909999999962524434588533-89999378768899999
Q 000803 142 PVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAVEDSGKFDV-KAWVCVSDDFDVLSISK 220 (1277)
Q Consensus 142 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~~~~~~f~~-~~wv~~~~~~~~~~~~~ 220 (1277)
+..+||+.+++++.++|... ...++++|+||||+||||||+++|++.+++. +|+. ++|+++++.++...++.
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~--~Fd~gV~WVsVs~~~d~~~IL~ 200 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQC--KMDFKIFWLNLKNCNSPETVLE 200 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHH--HHSSCEEEEECCCSSSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHH--HCCCCEEEEEECCCCCHHHHHH
T ss_conf 87789289999999997435-----8971899976999667999999997149887--4899389998289999999999
Q ss_pred HHHHHHCCCC---C---C-----CCCHHHHHHHHHHHH---CCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 9999820789---9---9-----886899999999830---596399996375530678687621134449999589998
Q 000803 221 ALLESITSAT---C---D-----LKTVDEVQVQLKKAV---DGKRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIIT 286 (1277)
Q Consensus 221 ~il~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iivT 286 (1277)
.++..++... . + ..+.+.+...+++.+ .++|+||||||+|+. ..|..+ + +||+||||
T Consensus 201 ~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVT 271 (1221)
T 1vt4_I 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLT 271 (1221)
T ss_dssp HHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEE
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEE
T ss_conf 99999862272102200134679999999999999999850478879987186818--999864----7---98299994
Q ss_pred CCCCCCCCCCCCCCEEECC------CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCC
Q ss_conf 0554332445888605268------9997879999999661899999403689999999853099568999997641189
Q 000803 287 TRNSHVASTMGPIDHYNLE------HLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTT 360 (1277)
Q Consensus 287 tr~~~~~~~~~~~~~~~l~------~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~ 360 (1277)
||+..++..+.....+.++ +|+.+|+|+||..... .. ..++..+ .|+|+||||+++|+.|+.+
T Consensus 272 TRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~-------~eeL~~e---ICgGLPLALkLaGs~Lr~k 340 (1221)
T 1vt4_I 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CR-------PQDLPRE---VLTTNPRRLSIIAESIRDG 340 (1221)
T ss_dssp CSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHHC-CC-------TTTHHHH---HCCCCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-CC-------HHHHHHH---HHCCCHHHHHHHHHHHHCC
T ss_conf 43737998668970899468655689699999999999749-98-------8999999---9698999999999998488
Q ss_pred --CHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCHHH-HHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf --9426999982103589998993799998540397345-6797573156999500857799999967954458971449
Q 000803 361 --TYDMWDDILDSKIWDLPRQSSILPVLRLSYHHLPSHL-KRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNEQL 437 (1277)
Q Consensus 361 --~~~~w~~~l~~~~~~~~~~~~i~~~l~~s~~~L~~~~-~~~~~~~s~fp~~~~i~~~~l~~~wia~g~i~~~~~~~~~ 437 (1277)
+...|... ....+..++++||+.|+++. |+||++||+||+++.|+...++.+|+++|
T Consensus 341 ~~s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG----------- 400 (1221)
T 1vt4_I 341 LATWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI----------- 400 (1221)
T ss_dssp CSSHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------
T ss_pred CCCHHHHHCC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------
T ss_conf 9979998669---------86189999999998488999999999971779999877999998766778-----------
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 99999999998848874002899974423389999999
Q 000803 438 KDLGSQCFHDLVSRSIFQRTGFGSSKFAMHDLVHALAQ 475 (1277)
Q Consensus 438 ~~~~~~~~~~L~~~sli~~~~~~~~~~~~hdli~~~~~ 475 (1277)
++.++.++++|+++||++..+ ...+|+|||++++++.
T Consensus 401 eedAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 401 KSDVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp SHHHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCEEEEC-CCCEEEEHHHHHHHHC
T ss_conf 899999999999619889868-9998986099999856
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=318.73 Aligned_cols=288 Identities=17% Similarity=0.231 Sum_probs=179.1
Q ss_pred CCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCC-CCCCCCCCCCCCCCCEEECCCCCCCEECCCCCCCCCCCCCC
Q ss_conf 86248998169876889043303366566157511389-53224888777546306414555420002899973234767
Q 000803 954 RNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGS-LKFVTKGKLPSSLKSLQIENLTLESLKIRDCPQLTCLSSGI 1032 (1277)
Q Consensus 954 ~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~L~~L~l~~~~L~~L~l~~~~~l~~~~~~~ 1032 (1277)
++|++|++++|. +..++...+..+++|+.|++++|.. +..++...+. .+ ...+|+.|++++|...+..+..+
T Consensus 329 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~-~~-----~~~~L~~L~L~~n~l~~~~~~~~ 401 (680)
T 1ziw_A 329 KCLEHLNMEDND-IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFV-SL-----AHSPLHILNLTKNKISKIESDAF 401 (680)
T ss_dssp TTCCEEECCSCC-BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTG-GG-----TTSCCCEEECTTSCCCEECTTTT
T ss_pred CCCCEEECCCCC-CCCCCHHHHCCCCCCCEEECCCCCHHHHHCCHHHHC-CC-----CCCCCCEEECCCCCCCEECHHHH
T ss_conf 778888798982-687885574065687289887980144323532202-45-----56867668899997776775442
Q ss_pred CCCCCCCCEEEECCCCCCCCC----CCCCCCCEEEECCCCCCCCCCCC--CCCCCCCEEEEECCCC--CCCCCCCCCCCC
Q ss_conf 621235706650578865223----22355537773135884223456--8668644898603656--234757789999
Q 000803 1033 HLLEALEDLHIRNCPKLESIP----KGLHKLRSIYIKKCPSLVSLAEK--GLPNTISHVTISYCEK--LDALPNGMHKLQ 1104 (1277)
Q Consensus 1033 ~~l~~L~~L~l~~~~~l~~ip----~~l~~L~~L~l~~c~~l~~l~~~--~~~~~L~~L~l~~~~~--l~~lp~~l~~l~ 1104 (1277)
..+++|+.|++++|.....+| ..+.+|+.|++++|. ++.++.. ...++|+.|++++|.. +..+|..+..++
T Consensus 402 ~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 402 SWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred HCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCEECHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCCC
T ss_conf 0778888886778757543575532575461278448997-542276455007543101101464422566776455578
Q ss_pred CCCEEECCCCCCCCCCCCCCC--CCCCCEEEECCCCCCCCHHHHH--------HHCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 857784237998633457798--8997638870544853103465--------410134687551001534787658026
Q 000803 1105 SLQYLKIKECPSILSFSEEGF--PTNLKLIRIGGGVDAKMYKAVI--------QWGLHRLTSLIGLSIEECHDAESFPDE 1174 (1277)
Q Consensus 1105 ~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~~~~~l~~~~--------~~~~~~l~~L~~L~l~~~~~l~~~~~~ 1174 (1277)
+|+.|++++| .+..++...+ .++|+.|++.+ +.+..+. ...+..+++|+.|++++| .+..+|.+
T Consensus 481 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~Ls~----N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 481 NLTILDLSNN-NIANINDDMLEGLEKLEILDLQH----NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE 554 (680)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS----SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred CCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCC----CCCCCCCHHHCCCCCCHHHCCCCCCCEEECCCC-CCCCCCHH
T ss_conf 7899989999-87767944634553468885889----973000000046774142337998888889999-78877977
Q ss_pred HHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC---CCCCCEEECCCCHHHHHHHCC-C
Q ss_conf 642268754333441446666535736888888878020037989887899998---776550102479006997601-7
Q 000803 1175 EMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGL---PSSLLSLEIKNCPKLRKQCKR-D 1250 (1277)
Q Consensus 1175 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~L~i~~c~~l~~~~~~-~ 1250 (1277)
. +...++|+.|++.++ +++.++...+..+++|+.|++++| .++.++...+ .++|+.+++.+|| +.|.|.. .
T Consensus 555 ~--~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~-~~c~c~~~~ 629 (680)
T 1ziw_A 555 V--FKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNP-FDCTCESIA 629 (680)
T ss_dssp T--TTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCC-CCBCCCCCS
T ss_pred H--CCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCCEEECCCCC-CCCCCCCHH
T ss_conf 7--346667522389999-777679768378988888989999-68705966830114665779831897-025776689
Q ss_pred CCCCCCCEEC
Q ss_conf 9987652101
Q 000803 1251 RGKEWSKIAR 1260 (1277)
Q Consensus 1251 ~~~~~~~~~~ 1260 (1277)
|...|.....
T Consensus 630 ~~~~~~~~~~ 639 (680)
T 1ziw_A 630 WFVNWINETH 639 (680)
T ss_dssp SEECCSSCC-
T ss_pred HHHHHHHHCC
T ss_conf 9999987367
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=306.03 Aligned_cols=311 Identities=17% Similarity=0.114 Sum_probs=166.1
Q ss_pred HHHHCCCCCEEEEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCC-CCCCCCCCCEEEECCCCCCCCCC-HHHCC
Q ss_conf 631028998015995189777878-9677998866554316876632342-21256667399705776765454-35105
Q 000803 545 LYDLLPKFKKLRLLSLQGYYIGEL-PIPFEDLRLLRYLNLADTDIRSLPE-SSCSLLNLEILILRNCSSLIKLP-SKIRR 621 (1277)
Q Consensus 545 ~~~~~~~l~~Lr~L~L~~~~l~~l-p~~~~~l~~Lr~L~L~~~~i~~lp~-~~~~L~~L~~L~l~~~~~~~~lp-~~i~~ 621 (1277)
++..|..++.|++|++++|.+..+ |..|+++.+|++|++++|.+..+|. .|+++.+|++|++++| .+..+| ..+++
T Consensus 41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 119 (680)
T 1ziw_A 41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVK 119 (680)
T ss_dssp CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTT
T ss_pred CHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCC-CCCCCCHHHCCC
T ss_conf 9788717876758878899648569778740667688889998567568545303888898989899-668539667415
Q ss_pred CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCHH--CCCCCCCCCCEEEECCCCCCCCHHHHHHHCC
Q ss_conf 66767564249633341887788888886228335278888778911--0001113586046427458899122366111
Q 000803 622 LINLCHLDIRGAILLKEMPFGMKELKNLQTLSNFVVGKGGETASGLE--DLKILKFLSGELCISGLQNVNDSKNAREAAL 699 (1277)
Q Consensus 622 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~l~--~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l 699 (1277)
+++|++|++++|......|..++++++|++|++..+.+....+..+. .+..|+.|. +.-+.+. ......+
T Consensus 120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~--L~~n~l~------~~~~~~~ 191 (680)
T 1ziw_A 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE--LSSNQIK------EFSPGCF 191 (680)
T ss_dssp CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE--CTTCCCC------CBCTTGG
T ss_pred CCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEE--CCCCCCC------CCCHHHH
T ss_conf 6788889898995246672111245567779745884365297886244666321798--8898256------5581555
Q ss_pred CCCCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCC-CCCCCCCCCCCCCEEEECCCCCCCCCC
Q ss_conf 4688778048996689999922478997610478954764899954089999-955488889980099880889999899
Q 000803 700 CEKLNLEALSLEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARF-PLWIGDPLFSKMNVLELDDCWNCTSLP 778 (1277)
Q Consensus 700 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~~L~l~~~~~~~~l~ 778 (1277)
....+|+.+.+..+.. ........... ...+.++.|.+.++..... |.++.....++|+.|++++|......+
T Consensus 192 ~~l~~L~~L~l~~~~l-----~~~~~~~~~~~-l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~ 265 (680)
T 1ziw_A 192 HAIGRLFGLFLNNVQL-----GPSLTEKLCLE-LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN 265 (680)
T ss_dssp GGSSEECEEECTTCCC-----HHHHHHHHHHH-HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT
T ss_pred HHHHHHHHHHCCCCCC-----CHHHHHHHHHH-HHHCCCCEEECCCCCCCCCCHHHHHCCCCCCCCEEECCCCCCCCCCC
T ss_conf 3223445543056646-----80567778777-53151008874577436468667514676778887787887675680
Q ss_pred -CCCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCC-CCCC--CCCCCCCCCCCCEEEEECC
Q ss_conf -99997887646662588823856422346446778654536502476533225-5555--5632455886538866048
Q 000803 779 -SLGLLSSLRDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWD-TNVD--RNEHVEIFPRLQKLSIVEC 854 (1277)
Q Consensus 779 -~l~~l~~L~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~--~~~~~~~~~~L~~L~l~~c 854 (1277)
.++.+++|+.|.+.+ +.+..+....++ .+++|+.|.+.+...-.... ..+. ....+..+++|+.|.+++|
T Consensus 266 ~~~~~l~~L~~L~L~~-n~l~~~~~~~~~-----~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEY-NNIQHLFSHSLH-----GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp TTTTTCTTCCEEECCS-CCBSEECTTTTT-----TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred CCCCCCCCCCEEECCC-CCCCCCCHHHHC-----CCCCCCEEECCCHHHHCCCCCCCCCCCCHHHCCCCCCCCEEECCCC
T ss_conf 2116741056855778-856765865626-----7888557736331321333335545438656246777888879898
Q ss_pred CCCCCCCCC---CCCCCCEEEEECCC
Q ss_conf 798668999---89996589982355
Q 000803 855 PELSGKVPE---LLPSLKTLVVSKCQ 877 (1277)
Q Consensus 855 ~~l~~~~p~---~l~~L~~L~i~~~~ 877 (1277)
.+.+..+. .+++|++|++++|.
T Consensus 340 -~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 340 -DIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp -CBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred -CCCCCCHHHHCCCCCCCEEECCCCC
T ss_conf -2687885574065687289887980
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=301.13 Aligned_cols=308 Identities=21% Similarity=0.294 Sum_probs=229.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCC-CEEEEEEECCCCC-
Q ss_conf 9998721350456999999971143258998089999926999099999999625244-345885-3389999378768-
Q 000803 138 VPTEPVVFGREEDKTKILEMVLTDTAADHANFAVIPIVGMGGIGKTTLAREVYNDKAV-EDSGKF-DVKAWVCVSDDFD- 214 (1277)
Q Consensus 138 ~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~~~~~~~~-~~~~~f-~~~~wv~~~~~~~- 214 (1277)
|+....||||+.+++.+.+.+.... +..++++|+||||+||||||.+++++... +. +| +.++|++++....
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~f~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEG--CFPGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHH--HCTTCEEEEEEESCCHH
T ss_pred CCCCCEECCCHHHHHHHHHHHHCCC----CCCCEEEEECCCCCCHHHHHHHHHHCHHHHHH--HCCCCEEEEECCCCCHH
T ss_conf 9998714052999999999986036----88846999769989889999999835568885--28996599977877668
Q ss_pred -HHHHHHHHHHHHCCC----CCCCCCHHHHHHHHHHHHCC--CEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCEEEEEC
Q ss_conf -899999999982078----99988689999999983059--63999963755306786876211344499995899980
Q 000803 215 -VLSISKALLESITSA----TCDLKTVDEVQVQLKKAVDG--KRFLLVLDDVWNEDYSLWVDLKAPFLAAAPNSKMIITT 287 (1277)
Q Consensus 215 -~~~~~~~il~~l~~~----~~~~~~~~~~~~~l~~~l~~--kr~LlvlDdv~~~~~~~~~~l~~~l~~~~~~~~iivTt 287 (1277)
+...+..++..++.. .....+.+.....++..+.+ +++||||||+|+. ..+. .+ .+|++||+||
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTs 264 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTT 264 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH--HHHH----HH---CCCCEEEEEC
T ss_conf 8999999999985035565567998899999999999706799869998589987--9998----76---3798699989
Q ss_pred CCCCCCCCCCCCCEEEC---CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
Q ss_conf 55433244588860526---899978799999996618999994036899999998530995689999976411899426
Q 000803 288 RNSHVASTMGPIDHYNL---EHLLDDDCWSIFKTHAFEGRDHNALEISESFRKKVVGKCGGLPLAAKTLGGLLRTTTYDM 364 (1277)
Q Consensus 288 r~~~~~~~~~~~~~~~l---~~l~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~PLai~~~~~~l~~~~~~~ 364 (1277)
|+..++..+.. ..+.+ ++|+.+|+++||...++.. .....+.+.+|+++|+|+|||++.+|+.++... ..
T Consensus 265 R~~~~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~ 337 (591)
T 1z6t_A 265 RDKSVTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NR 337 (591)
T ss_dssp SCGGGGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TC
T ss_pred CCCHHHHHCCC-CCEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC-HH
T ss_conf 88177773489-826861588999899999999871898-----310459999999995898379999999984484-35
Q ss_pred HHHHHHHCCCCC----C-----CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCEECHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 999982103589----9-----9899379999854039734567975731569995008577999999679544589714
Q 000803 365 WDDILDSKIWDL----P-----RQSSILPVLRLSYHHLPSHLKRCFAYCAIFPKDFEFDEKELVFLWIAGGIIRQSSNNE 435 (1277)
Q Consensus 365 w~~~l~~~~~~~----~-----~~~~i~~~l~~s~~~L~~~~~~~~~~~s~fp~~~~i~~~~l~~~wia~g~i~~~~~~~ 435 (1277)
|...++...... . ....+..++..||+.|+++.|.||.++|+||+++.|+...+...|.++
T Consensus 338 w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~---------- 407 (591)
T 1z6t_A 338 WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME---------- 407 (591)
T ss_dssp HHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC----------
T ss_conf 9999999988689876511465437899999999986899999999974556799850899999996658----------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCHHHHHHHHHHHHCC
Q ss_conf 49999999999988488740028-999744233899999998302
Q 000803 436 QLKDLGSQCFHDLVSRSIFQRTG-FGSSKFAMHDLVHALAQLVSG 479 (1277)
Q Consensus 436 ~~~~~~~~~~~~L~~~sli~~~~-~~~~~~~~hdli~~~~~~~~~ 479 (1277)
.+.+..++++|++++|++... +....|.||+++|++++....
T Consensus 408 --~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 --TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp --HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred --HHHHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf --8999999999985958688548985679976899999986535
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=294.56 Aligned_cols=521 Identities=15% Similarity=0.077 Sum_probs=253.1
Q ss_pred CEEEEEECCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCC-CCCCCCCCCCCEEEECCCCCCCCCCHHHCCCCCCCEEEE
Q ss_conf 8015995189777878-96779988665543168766323-422125666739970577676545435105667675642
Q 000803 553 KKLRLLSLQGYYIGEL-PIPFEDLRLLRYLNLADTDIRSL-PESSCSLLNLEILILRNCSSLIKLPSKIRRLINLCHLDI 630 (1277)
Q Consensus 553 ~~Lr~L~L~~~~l~~l-p~~~~~l~~Lr~L~L~~~~i~~l-p~~~~~L~~L~~L~l~~~~~~~~lp~~i~~L~~L~~L~l 630 (1277)
..+++|++++|.++.+ |..|+++++|++|++++|.+..+ |..|.++.+|++|++++|......|..++++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 86758981587347179667256766528978898355248511368433676448898565458655234421537652
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCEEECCCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCEE
Q ss_conf 496333418-8778888888622833527888877891100011135860464274588991223661114688778048
Q 000803 631 RGAILLKEM-PFGMKELKNLQTLSNFVVGKGGETASGLEDLKILKFLSGELCISGLQNVNDSKNAREAALCEKLNLEALS 709 (1277)
Q Consensus 631 ~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~l~~l~~L~~L~~~l~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 709 (1277)
++|. +..+ |..++.+++|++|++..+.+.......+..+.+|+.| +
T Consensus 113 ~~n~-i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L--------------------------------~ 159 (606)
T 3t6q_A 113 IQTG-ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL--------------------------------D 159 (606)
T ss_dssp TTSC-CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEE--------------------------------E
T ss_pred CCCC-CCCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEE--------------------------------E
T ss_conf 1267-665781012237822389887983411476545687656877--------------------------------7
Q ss_pred EEECCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEEEECCCCC-CCCCCCCCCCCCC--EEEECCCCCCCCCCCCCCCCCC
Q ss_conf 996689999922478997610478954764899954089999-9554888899800--9988088999989999997887
Q 000803 710 LEWGSQFDNSRDEVAEEQVLGVLQPYKFVKELTIKRYGGARF-PLWIGDPLFSKMN--VLELDDCWNCTSLPSLGLLSSL 786 (1277)
Q Consensus 710 l~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~~~~L~--~L~l~~~~~~~~l~~l~~l~~L 786 (1277)
++.+ ....+ |..+.. +++|+ .|++++|......+.....+.|
T Consensus 160 L~~n---------------------------------~l~~~~~~~~~~--l~~L~~l~L~l~~n~l~~~~~~~~~~~~L 204 (606)
T 3t6q_A 160 FQNN---------------------------------AIHYLSKEDMSS--LQQATNLSLNLNGNDIAGIEPGAFDSAVF 204 (606)
T ss_dssp CCSS---------------------------------CCCEECHHHHHT--TTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred CCCC---------------------------------CCCCCCHHHHHH--HCCCCEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf 6568---------------------------------445549656332--21564038966798147548667300100
Q ss_pred CEEEECCCCCCEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCC---
Q ss_conf 64666258882385642234644677865453650247653322555555632455886538866048798668999---
Q 000803 787 RDLTIKRMTNLKSIGCEFFGKCFSEPFQSLEILSFEYLPEWERWDTNVDRNEHVEIFPRLQKLSIVECPELSGKVPE--- 863 (1277)
Q Consensus 787 ~~L~l~~~~~l~~i~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~--- 863 (1277)
+.|.+.++..+....... ....+..+.+..+..+.........-... .-.+|+.+.+.+| .+.+..+.
T Consensus 205 ~~L~l~~~~~~~~~~~~l-------~~~~l~~l~~~~~~~~~~~~i~~~~~~~l-~~~~L~~L~l~~n-~l~~~~~~~~~ 275 (606)
T 3t6q_A 205 QSLNFGGTQNLLVIFKGL-------KNSTIQSLWLGTFEDMDDEDISPAVFEGL-CEMSVESINLQKH-YFFNISSNTFH 275 (606)
T ss_dssp EEEECTTCSCHHHHHHHT-------TTCEEEEEECCCCTTSCCCCCCGGGGGGG-GGSEEEEEECTTC-CCSSCCTTTTT
T ss_pred CCCCCCCCHHHHHHHHHC-------CCCCHHHEECHHHCCCCCCCCCHHHHCHH-HCCCEEEEEEECC-CCCCCCHHHHC
T ss_conf 135567726677776513-------35644220020110264122686674303-2075059994457-65855777744
Q ss_pred CCCCCCEEEEECCCCCCC--CCCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 899965899823556321--267898512898145653113467731212100145641000378884224467666420
Q 000803 864 LLPSLKTLVVSKCQKLKF--SLSSYPMLCRLEADECKELLCRTPIDSKLIKSMTISNSSLDINGCEGMLHASRTSSSLLQ 941 (1277)
Q Consensus 864 ~l~~L~~L~i~~~~~l~~--~~~~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~~~~~L~~l~ 941 (1277)
.+++|++|++.++..... .+..+
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l------------------------------------------------------- 300 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGL------------------------------------------------------- 300 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSC-------------------------------------------------------
T ss_pred CCCCCCEEECCCCCCCCCCHHHCCC-------------------------------------------------------
T ss_conf 5667888956288267778214165-------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCEECCC
Q ss_conf 03444422236686248998169876889043303366566157511389532248887775463064145554200028
Q 000803 942 TETISNALDFFPRNLRYLIISEISTLRSLPEEIMDNNSRLESLYIGYCGSLKFVTKGKLPSSLKSLQIENLTLESLKIRD 1021 (1277)
Q Consensus 942 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~L~~L~l~~ 1021 (1277)
++|++|++++|. +..++...+..+++|+.|++++|.....++... +..+. +|+.|++++
T Consensus 301 ------------~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~----~L~~L~l~~ 359 (606)
T 3t6q_A 301 ------------STLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGC----LENLE----NLRELDLSH 359 (606)
T ss_dssp ------------TTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST----TTTCT----TCCEEECCS
T ss_pred ------------CCCCEEECCCCC-CCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHH----HHCCC----CCCEEECCC
T ss_conf ------------468889771687-686760233015768988898997444346245----50667----589887889
Q ss_pred CCCCCCC--CCCCCCCCCCCCEEEECCCCCCCCCCC---CCCCCEEEECCCCCCCCC-CC--CCCCCCCCEEEEECCCCC
Q ss_conf 9997323--476762123570665057886522322---355537773135884223-45--686686448986036562
Q 000803 1022 CPQLTCL--SSGIHLLEALEDLHIRNCPKLESIPKG---LHKLRSIYIKKCPSLVSL-AE--KGLPNTISHVTISYCEKL 1093 (1277)
Q Consensus 1022 ~~~l~~~--~~~~~~l~~L~~L~l~~~~~l~~ip~~---l~~L~~L~l~~c~~l~~l-~~--~~~~~~L~~L~l~~~~~l 1093 (1277)
|...... +..+..+++|+.|++++|......|.. +++|+.|++++|. ++.. +. ....++|+.|++++|...
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~ 438 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLLD 438 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCCTTTTCTTCCEEECTTCCCB
T ss_pred CCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCCCHHHHCCCCCCEEECCCCCCC
T ss_conf 9666456752210567888989898996775788873477457768788886-777565212417655888989898557
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 34757789999857784237998633457798899763887054485310346541013468755100153478765802
Q 000803 1094 DALPNGMHKLQSLQYLKIKECPSILSFSEEGFPTNLKLIRIGGGVDAKMYKAVIQWGLHRLTSLIGLSIEECHDAESFPD 1173 (1277)
Q Consensus 1094 ~~lp~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~~~~~~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 1173 (1277)
...|..+..+++|++|++++|. +.... ......+..+++|+.|++++|......|.
T Consensus 439 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~-----------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 439 ISSEQLFDGLPALQHLNLQGNH-FPKGN-----------------------IQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp TTCTTTTTTCTTCCEEECTTCB-CGGGE-----------------------ECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred CCCHHHHHCCCCCCEEECCCCC-CCCCC-----------------------CCCCHHHCCCCCCCEEECCCCCCCCCCHH
T ss_conf 7687787378878889898998-88543-----------------------45431240488766887999966706864
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCC--CCCCCEEECCCCHHHHHHHCCCC
Q ss_conf 6642268754333441446666535736888888878020037989887899998--77655010247900699760179
Q 000803 1174 EEMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEVGL--PSSLLSLEIKNCPKLRKQCKRDR 1251 (1277)
Q Consensus 1174 ~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~i~~c~~l~~~~~~~~ 1251 (1277)
. +..+++|+.|++.+| ++.......+..+++| .|++++| .++.+++..+ .++|+.+++++|| +.|.|...|
T Consensus 495 ~---~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-~~c~c~~~~ 567 (606)
T 3t6q_A 495 A---FTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASN-HISIILPSLLPILSQQRTINLRQNP-LDCTCSNIY 567 (606)
T ss_dssp T---TTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSS-CCCCCCGGGHHHHHTSSEEECTTCC-EECSGGGHH
T ss_pred H---HCCCCCCCEEECCCC-CCCCCCHHHHCCCCCC-EEECCCC-CCCCCCHHHCCCCCCCCEEECCCCC-CCCCCCCHH
T ss_conf 6---326567888989898-0686896684756651-8987689-4142687662567787889677998-616677578
Q ss_pred CCCCCCE
Q ss_conf 9876521
Q 000803 1252 GKEWSKI 1258 (1277)
Q Consensus 1252 ~~~~~~~ 1258 (1277)
...|.+-
T Consensus 568 ~~~w~~~ 574 (606)
T 3t6q_A 568 FLEWYKE 574 (606)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999973
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=285.83 Aligned_cols=103 Identities=18% Similarity=0.215 Sum_probs=58.6
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCC-
Q ss_conf 4101346875510015347876580266422687543334414466665357368888888780200379898878999-
Q 000803 1148 QWGLHRLTSLIGLSIEECHDAESFPDEEMRMMLPASLTFLILRRLSKLKYLSSMGFQSLTSLEHLLIEDCPNLTSFPEV- 1226 (1277)
Q Consensus 1148 ~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~l~~L~~L~l~~c~~l~~l~~~- 1226 (1277)
+..+..+++|+.|++++|......|.. +..+++|+.|++.+| ++..+.+..+..+++|+.|++++| .++.+|..
T Consensus 466 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~~~ 540 (606)
T 3vq2_A 466 SNVFANTTNLTFLDLSKCQLEQISWGV---FDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGIL 540 (606)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTT---TTTCTTCCEEECCSS-CCSCEEGGGTTTCTTCCEEECTTS-CCCCEESCG
T ss_pred HHHHCCCCCCCEEECCCCCCCCCCHHH---HCCCCCCCEEECCCC-CCCCCCHHHCCCCCCCCEEECCCC-CCCCCCHHH
T ss_conf 776045788998989888577648656---154646898989899-578748777068876898889898-376668767
Q ss_pred -CCCCCCCEEECCCCHHHHHHHCCCCCCCCC
Q ss_conf -987765501024790069976017998765
Q 000803 1227 -GLPSSLLSLEIKNCPKLRKQCKRDRGKEWS 1256 (1277)
Q Consensus 1227 -~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~ 1256 (1277)
.++.+|+.+++.+|| +.|.|...|...|.
T Consensus 541 ~~l~~~L~~l~l~~N~-~~c~c~~~~~~~~l 570 (606)
T 3vq2_A 541 QHFPKSLAFFNLTNNS-VACICEHQKFLQWV 570 (606)
T ss_dssp GGSCTTCCEEECCSCC-CCCSSTTHHHHTTT
T ss_pred HHHCCCCCEEECCCCC-CCCCCCCHHHHHHH
T ss_conf 5210217488762898-66477648999998
Done!