Query 000808
Match_columns 1275
No_of_seqs 296 out of 5015
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 17:09:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000808.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_577-581//hhsearch_pdb/000808hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 667.2 41.7 789 1-916 446-1300(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 593.4 43.7 217 675-916 1028-1254(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 438.9 32.2 205 676-919 356-562 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 430.8 28.0 207 677-914 671-981 (986)
5 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 430.7 28.9 217 676-929 268-486 (538)
6 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 428.3 30.1 205 676-919 286-492 (538)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 422.3 32.1 196 703-915 335-635 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 421.6 23.3 201 704-929 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 346.9 25.9 199 703-916 597-898 (916)
10 2r6f_A Excinuclease ABC subuni 1.0 1 1 323.1 32.1 196 704-915 638-937 (972)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=667.18 Aligned_cols=789 Identities=19% Similarity=0.210 Sum_probs=380.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCC---CCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 98983899999789897982999999832379998992689866---541378766544667889989999999762388
Q 000808 1 MTLLLGPPCSGKTTLLLALAGKLDSKLKFSGRVTYNGHGMDEFV---PQRTAAYISQHDVHIGEMTVRETLAFSARCQGV 77 (1275)
Q Consensus 1 ltaIlGpsGSGKSTLL~~LaG~~~~~~~~~G~V~i~G~~~~~~~---~~~~i~yv~Q~d~~~~~lTVrEnL~f~a~l~~~ 77 (1275)
.++|+||||||||||+++|+|+++|. +|+|.++|+++++.. .|+.++||+|+++++ +.||||||.|+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~----- 516 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK----- 516 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----
T ss_pred EEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----
T ss_conf 78998058985778888754565164---486157996501125999850466658753320-786167886415-----
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 87630326856998860899998646888885311000335699999981995445543378755335624332236987
Q 000808 78 GSRYDMLTELARREKEAGIKPDPDIDVYMKAAATEGQEANVLTDYYLKVLGLEVCDDTLVGDEMVRGISGGQKKRVTTGE 157 (1275)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~d~~l~~l~L~~~~~T~VG~~~~~~LSGGQKrRlsIA~ 157 (1275)
|+.+.+++.++|....- .|.+ ..||+++||.||+++. +||||||||++|||
T Consensus 517 --------------------~~~~~~~v~~a~~~a~l-----~~~i---~~lp~G~~T~vGe~G~-~LSGGQkQRiaiAR 567 (1321)
T 4f4c_A 517 --------------------EGITREEMVAACKMANA-----EKFI---KTLPNGYNTLVGDRGT-QLSGGQKQRIAIAR 567 (1321)
T ss_dssp --------------------TTCCHHHHHHHHHHTTC-----HHHH---HHSTTTTSSEESSSSC-CCCHHHHHHHHHHH
T ss_pred --------------------CCCHHHHHHHHHHHCCC-----HHHH---HCCCCCCCCEECCCCC-CCCHHHHHHHHHHH
T ss_conf --------------------52209999999987565-----4688---7088888607558988-77777879999999
Q ss_pred HHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCCEEEECCCEEEEECCHHHHHHHH
Q ss_conf 77349708787279856046999999999999968329989999538991589410248886498088764821499999
Q 000808 158 MMVGPALALFMDEISTGLDSSTTFQIVNSIRQNIHILNGTAVISLLQPAPETYDLFDDIILLSDAQIVYQGPRELVLDFF 237 (1275)
Q Consensus 158 al~~~~~IllLDEPTSgLDs~sa~~I~~~l~~~~~~~~~t~ii~i~q~~~e~~~lfD~I~vL~~G~vv~~G~~~~l~~~f 237 (1275)
|++++|+|++||||||+||++++..+.+.+.+.. +++|+|+..|+. +....+|+|++|++|+++++|+++++++.
T Consensus 568 Al~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaHrl--s~i~~aD~Iivl~~G~ive~Gth~eL~~~- 642 (1321)
T 4f4c_A 568 ALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAHRL--STIRNADLIISCKNGQVVEVGDHRALMAQ- 642 (1321)
T ss_dssp HHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECSCT--TTTTTCSEEEEEETTEEEEEECHHHHHTT-
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECCCH--HHHHHCCEEEEEECCEEECCCCHHHHHHH-
T ss_conf 8725999899845544688789999999999984--798899973638--78986898999639965136899999985-
Q ss_pred HHCCCCCCCCCCHHHHHHHH--CCCHHHHHH-HHCCCCCC-CCC--------CHHHHH---HHHHHCHHHHHHHHHHCCC
Q ss_conf 84899899999903478751--693012344-31047887-557--------987999---9986223337789850487
Q 000808 238 ESMGFKCPERKGVADFLQEV--TSRKDQQQY-WVHKEMPY-RFV--------TAQEFS---EAFQSFTVGQKLADELRTP 302 (1275)
Q Consensus 238 ~~~G~~~p~~~~~ad~~~~~--~~~~~~~~~-~~~~~~~~-~~~--------~~~~~~---~~~~~~~~~~~~~~~~~~~ 302 (1275)
+...++..... ....+.... ....+... ... ...+.. +..+............ ..
T Consensus 643 ---------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 712 (1321)
T 4f4c_A 643 ---------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMNRVRSSTIGSITNGPV-ID 712 (1321)
T ss_dssp ---------TCHHHHHHHHHHHHHHHHHHHCC------------------------------------------------
T ss_pred ---------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC-HH
T ss_conf ---------32799999962212222332334433223211122222342222222110221110132124567740-25
Q ss_pred CCCCCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--HHHHHHC----CCCC-
Q ss_conf 6668889753--------33566556799999999999999973083899999999999999--9987652----3468-
Q 000808 303 FDKCKSHPAA--------LTTKMYGVGKKELLKANISRELLLMKRNSFVYIFKLTQLSSMAL--VSMTLFF----RTKM- 367 (1275)
Q Consensus 303 ~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~l--~~~~l~~----~~~~- 367 (1275)
.++....... ........+.+ +.+......+....+......+.+. ....+++ ....
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 784 (1321)
T 4f4c_A 713 EKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAG 784 (1321)
T ss_dssp ---CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 77753154038999999997078631099--------9999987789999999999999999999999999999987517
Q ss_pred CCCCCCCCCCEEHHHHHHHHH--HHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888767754201487999999--999666899987411235898530488612479997999983199998998976543
Q 000808 368 HKDSVSDGGIYVGATFFAVMM--TMFNGMSDISMTIAKLPVFYKQRDLRFYAAWAYALPAWILKIPISFLEVAVWVFLTY 445 (1275)
Q Consensus 368 ~~~~~~~~~~~~g~~f~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~y~~~~~~l~~~i~~~p~~~~~~~~~~~i~y 445 (1275)
+.........+..+.+..+.. ..+..+..............+- ...+...+...|+.|++.
T Consensus 785 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~l---------r~~l~~~il~~~~~ffd~-------- 847 (1321)
T 4f4c_A 785 NPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDL---------RNKLFRNVLSQHIGFFDS-------- 847 (1321)
T ss_dssp CSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHTSCSSSTTS--------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHCCCCHHHCC--------
T ss_conf 934556678999999999999999999999999999999999999---------999988873499333216--------
Q ss_pred HCCCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCC---
Q ss_conf 03564578568999999999-------------99999999999998815876888888999999998740421067---
Q 000808 446 YVIGFDPNIGRLFKQFLLLL-------------LVNQMASALFRFIAAAGRNMIVAMSFGSFVLLVLFAFGGFVLSR--- 509 (1275)
Q Consensus 446 ~l~~l~~~~~~~~~~~l~~~-------------l~~~~~~~l~~~i~~~~~~~~ia~~~~~~~~~~~~l~~gf~i~~--- 509 (1275)
-..+.|++.+++.... ++......++.++..+..+..++..+. ..++++.+..++...
T Consensus 848 ----~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l--~~~~~~~~~~~~~~~~~~ 921 (1321)
T 4f4c_A 848 ----PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLII--AILPIVAFGQYLRGRRFT 921 (1321)
T ss_dssp ----GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH--HHHHHHHHHHHHHTSCCS
T ss_pred ----CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_conf ----78884888850250599999999999999999865377770221378689999999--988899999999999999
Q ss_pred -CCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHH--HHHHHHHHHH
Q ss_conf -8853013564825799999999999670899654346787643257775306865677411477999--9999999999
Q 000808 510 -DDIKKWWVWGYWCSPMMYAQNAIVANEFFGHSWRKFTSNSNETLGVQVLKSRGFFPHAYWYWLGLGA--TIGFVLLFNI 586 (1275)
Q Consensus 510 -~~i~~~~~w~~~~sp~~y~~~~~~~~e~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~w~~~~~--l~~~~~~~~~ 586 (1275)
......-..........-..+++.....++..-.. ....... -+...+. .+. ...+.....+. .+.+ +...+
T Consensus 922 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~-~~~~~~~-~~~~~~~-~~~-~~~~~~~~~~~~~~~~~-~~~~~ 996 (1321)
T 4f4c_A 922 GKNVKSASEFADSGKIAIEAIENVRTVQALAREDTF-YENFCEK-LDIPHKE-AIK-EAFIQGLSYGCASSVLY-LLNTC 996 (1321)
T ss_dssp SCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHH-HHHHHHH-HHHHHHH-HHH-HHHHHHHHHHHHTTHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHH-HHHHHHH-HHH-HHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 999999999888988999999627988861414889-9999999-9999999-999-99999999999999999-99999
Q ss_pred HHHHHHHHCCCCC-CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCHHHHHCCCCCCCCCCCCC
Q ss_conf 9999875046678-88511105875453477678875445688999888888754-311221011100011112356676
Q 000808 587 GFTLSLTFLNQFE-KPRAVISDESESNDLGNRIGGTAQLSTHGSNSSHKTCSESE-DITVKDSFSQLLSQREVTVGAIQP 664 (1275)
Q Consensus 587 ~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 664 (1275)
.+.+......... ....... ... . ..................... .....+......+. ... ...
T Consensus 997 ~~~~g~~lv~~~~~~~~~~~~-----~~~---~-~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~---~~~-~~~ 1063 (1321)
T 4f4c_A 997 AYRMGLALIITDPPTMQPMRV-----LRV---M-YAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRK---ISK-IDS 1063 (1321)
T ss_dssp HHHHHHHTTSSSSCSSCHHHH-----HHH---H-HHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHC---CCS-SCT
T ss_pred HHHHHHHHHHCCCCCCCHHHH-----HHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-CCC
T ss_conf 998757887537654214789-----999---9-999877889999999999999999999989998607---665-777
Q ss_pred CCCCCCCCCCCCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCE
Q ss_conf 67786567777089999699998146023320465453221121389994773999996999968999998978999961
Q 000808 665 KKRGMVLPFEPHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY 744 (1275)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~ 744 (1275)
.......+.....++|+||+++|+.. ...++|+|+|+.|+|||++||+||||||||||+++|.|..+ +
T Consensus 1064 ~~~~~~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p 1131 (1321)
T 4f4c_A 1064 LSLAGEKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--T 1131 (1321)
T ss_dssp TCCCSBCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--C
T ss_pred CCCCCCCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--C
T ss_conf 66778788888818999879857999----------98821245169988989999989999819999999956863--8
Q ss_pred EEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-----
Q ss_conf 89999993910783---3344449996368988999999999999876059999998899999999999929974-----
Q 000808 745 ITGNITISGYPKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP----- 816 (1275)
Q Consensus 745 ~~G~i~~~g~~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~----- 816 (1275)
.+|+|.+||.++.. ..+|+.++||||++.++. .|+|||+.|+. .|.+.+ ++.++++++..++.+
T Consensus 1132 ~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d~~~~s----d~ei~~Al~~a~l~~~I~~L 1203 (1321)
T 4f4c_A 1132 LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---DPSSVT----MAQVEEAARLANIHNFIAEL 1203 (1321)
T ss_dssp SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---CTTTSC----HHHHHHHHHHTTCHHHHHTS
T ss_pred CCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---CCCCCC----HHHHHHHHHHHCCHHHHHCC
T ss_conf 99789999998654999999854599878997327-23999974549---999999----99999999982984999717
Q ss_pred --CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
Q ss_conf --333434689888779889899999999951996879949999999999999999999986389799999648898899
Q 000808 817 --LRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIF 894 (1275)
Q Consensus 817 --~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~ 894 (1275)
--|+.+|.. ...||||||||+||||||+++|+||+||||||+||++|+..|++.|++.. +++|+|+++|+++ ..
T Consensus 1204 p~GldT~vge~-G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti 1279 (1321)
T 4f4c_A 1204 PEGFETRVGDR-GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TV 1279 (1321)
T ss_dssp TTTTCSEETTT-SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TT
T ss_pred CCCCCCEECCC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHH--HH
T ss_conf 67899982388-91569999999999999971799899968111578999999999999973-9998999606899--99
Q ss_pred HHHHHHHEEECCCEEEEECCCC
Q ss_conf 8520524000595799987998
Q 000808 895 ESFDELFLMKRGGQEIYVGPLG 916 (1275)
Q Consensus 895 ~~fd~~~~l~~~g~~~~~g~~~ 916 (1275)
..+|+|++|++ |+++.+|+++
T Consensus 1280 ~~aD~I~Vld~-G~IvE~Gth~ 1300 (1321)
T 4f4c_A 1280 MNADCIAVVSN-GTIIEKGTHT 1300 (1321)
T ss_dssp TTCSEEEEESS-SSEEEEECHH
T ss_pred HHCCEEEEEEC-CEEEEECCHH
T ss_conf 96999999989-8999988889
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=593.40 Aligned_cols=217 Identities=26% Similarity=0.364 Sum_probs=173.1
Q ss_pred CCEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 70899996999981460233204654532211213899947739999969999689999989789999618999999391
Q 000808 675 PHSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 754 (1275)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~ 754 (1275)
...++++|++++++.. ....+|+|+|+.++|||++||+||||||||||+++|+|..+ +.+|+|.+||.
T Consensus 1028 ~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGK 1095 (1284)
T ss_dssp SCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSS
T ss_pred CCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 7857999989977999----------98700203059976998899988999978999999946867--89977989999
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 0783---334444999636898899999999999987605999999889999999999992997-------433343468
Q 000808 755 PKKQ---ETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELN-------PLRQSLVGL 824 (1275)
Q Consensus 755 ~~~~---~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~-------~~~~~~~g~ 824 (1275)
+... ..+++.++||+|++.++ ..|++||+.+....+ ..+.++ +.+.++..++. +-.|+.+|.
T Consensus 1096 ~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vge 1167 (1284)
T 3g5u_A 1096 EIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSYEE----IVRAAKEANIHQFIDSLPDKYNTRVGD 1167 (1284)
T ss_dssp CTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCST
T ss_pred ECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCCC---CCCHHH----HHHHHHHHCCHHHHHHCCCCCCCCCCC
T ss_conf 800078999970268987787406-666999974668778---999999----999999839599997270424561178
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE
Q ss_conf 98887798898999999999519968799499999999999999999999863897999996488988998520524000
Q 000808 825 PGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK 904 (1275)
Q Consensus 825 ~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~ 904 (1275)
. ...||||||||++|||+|+++|+||+|||||+|||+.++..+++.+++.. +|+|+|+++|+++. + ...|++++|.
T Consensus 1168 ~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH~l~~-i-~~~dri~vl~ 1243 (1284)
T 3g5u_A 1168 K-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAHRLST-I-QNADLIVVIQ 1243 (1284)
T ss_dssp T-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECSCTTG-G-GSCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH-H-HCCCEEEEEE
T ss_conf 8-89338999999999999974999999868755579999999999999867-99989999558799-9-8099899998
Q ss_pred CCCEEEEECCCC
Q ss_conf 595799987998
Q 000808 905 RGGQEIYVGPLG 916 (1275)
Q Consensus 905 ~~g~~~~~g~~~ 916 (1275)
+ |+++..|+.+
T Consensus 1244 ~-G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1244 N-GKVKEHGTHQ 1254 (1284)
T ss_dssp T-BEEEEEECHH
T ss_pred C-CEEEEECCHH
T ss_conf 9-9899977899
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=438.87 Aligned_cols=205 Identities=22% Similarity=0.274 Sum_probs=164.4
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++++++++.+. + ..|+++++.+++||++||+||||||||||+++|+|...+ .+|+|.+
T Consensus 356 ~~l~~~~l~~~~~-------------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~---- 415 (607)
T 3bk7_A 356 TLVEYPRLVKDYG-------------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW---- 415 (607)
T ss_dssp EEEEECCEEEECS-------------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----
T ss_pred EEEEEECEEEEEC-------------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----
T ss_conf 2899913098744-------------3-489935153279989999999998999999999669888--8628999----
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78333444499963689889999999999998760599999988999999999999299743334346898887798898
Q 000808 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 756 ~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 835 (1275)
.+.++|++|+....+.+||.|++....... ....+.++++++.+++.+..+..++ .||||||
T Consensus 416 ------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 477 (607)
T 3bk7_A 416 ------DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGEL 477 (607)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHH
T ss_pred ------EEEEEEEECCCCCCCCCCHHHHHHHHHCCC-------CCHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHH
T ss_conf ------027999805766778984999997531258-------7789999999987699337549922-----3799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEEC
Q ss_conf 999999999519968799499999999999999999999863-8979999964889889985205240005-95799987
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVG 913 (1275)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~-~g~~~~~g 913 (1275)
|||+||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|++. .+....|++++|.. .|+.+..|
T Consensus 478 QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g 556 (607)
T 3bk7_A 478 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRAL 556 (607)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECC
T ss_conf 99999999974899899968744789999999999999999747989999909899-99986999999959830697428
Q ss_pred CCCCCC
Q ss_conf 998650
Q 000808 914 PLGRHS 919 (1275)
Q Consensus 914 ~~~~~~ 919 (1275)
++.+..
T Consensus 557 ~p~~~~ 562 (607)
T 3bk7_A 557 PPMGMR 562 (607)
T ss_dssp CCEEHH
T ss_pred CHHHHH
T ss_conf 989997
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=430.76 Aligned_cols=207 Identities=20% Similarity=0.260 Sum_probs=154.9
Q ss_pred EEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCC
Q ss_conf 89999699998146023320465453221121389994773999996999968999998978999961899999939107
Q 000808 677 SLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 756 (1275)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~ 756 (1275)
-++.+|+++.+.. ..+.+|+++|+.+++|++++|+||||||||||+++|+|... +.+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~--P~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL--PTSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC--CSEEEEEECTT--
T ss_pred EEEEEEEEEEECC-----------CCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEECCC--
T ss_conf 6999846998189-----------87413432279982897899989999879999999957988--88608998686--
Q ss_pred CCCCCCCEEEEECCCCCC----CCCCCHHHHHHHHHHCC------------CC-C-------------------------
Q ss_conf 833344449996368988----99999999999987605------------99-9-------------------------
Q 000808 757 KQETFTRISGYCEQNDIH----SPFVTVYESLLYSAWLR------------LP-P------------------------- 794 (1275)
Q Consensus 757 ~~~~~~~~~~yv~q~~~~----~~~ltv~e~l~f~~~~~------------~~-~------------------------- 794 (1275)
..++|++|+..+ ....|++|++.+.-... .. .
T Consensus 736 ------~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~ 809 (986)
T 2iw3_A 736 ------CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRR 809 (986)
T ss_dssp ------CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEE
T ss_pred ------CCEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf ------42576313024332100114799998877504502555543321034355544200011232012344445554
Q ss_pred --------------------------CCC----------------------------------HHHHHHHHHHHHHHCCC
Q ss_conf --------------------------999----------------------------------88999999999999299
Q 000808 795 --------------------------EVD----------------------------------SETQKMFIEEIMELVEL 814 (1275)
Q Consensus 795 --------------------------~~~----------------------------------~~~~~~~v~~~l~~l~l 814 (1275)
... ....++.++++++.+||
T Consensus 810 ~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL 889 (986)
T 2iw3_A 810 KFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGL 889 (986)
T ss_dssp EETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTC
T ss_pred HHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 31222002100025543200000123432344321016777666766554432455543022323479999999997699
Q ss_pred CC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf 74-3-334346898887798898999999999519968799499999999999999999999863897999996488988
Q 000808 815 NP-L-RQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSID 892 (1275)
Q Consensus 815 ~~-~-~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~ 892 (1275)
.. . .+..+ ..||||||||++||++|+.+|++|+|||||+|||..+...+.+.|++. +.|||+++|++. .
T Consensus 890 ~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~ 960 (986)
T 2iw3_A 890 DPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-F 960 (986)
T ss_dssp CHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-H
T ss_pred CCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH---CCEEEEEECCHH-H
T ss_conf 8054448980-----423999999999999998399999997986577999999999999974---997999979899-9
Q ss_pred HHHHHHHHHEEECCCEEEEECC
Q ss_conf 9985205240005957999879
Q 000808 893 IFESFDELFLMKRGGQEIYVGP 914 (1275)
Q Consensus 893 ~~~~fd~~~~l~~~g~~~~~g~ 914 (1275)
+....|++++|.+ |+++..|+
T Consensus 961 v~~l~DrVivL~~-G~Iv~~G~ 981 (986)
T 2iw3_A 961 TKNLTEEVWAVKD-GRMTPSGH 981 (986)
T ss_dssp HTTTCCEEECCBT-TBCCC---
T ss_pred HHHHCCEEEEEEC-CEEEEECC
T ss_conf 9985899999989-99998687
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=430.73 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=166.7
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..+++++++..+. ...++.+++.+++||+++|+||||||||||+++|+|...+ .+|+|.+++
T Consensus 268 ~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~-- 329 (538)
T 3ozx_A 268 TKMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEK-- 329 (538)
T ss_dssp EEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSC--
T ss_pred CEEEECCEEEEEC--------------CEEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECC--
T ss_conf 0699823399979--------------8899826646889989999999999899999999578889--981899998--
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78333444499963689889999999999998760599999988999999999999299743334346898887798898
Q 000808 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 756 ~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 835 (1275)
+.++|++|+.......||+|++.+...... .. ....++++++.+++.+..+..++ .||||||
T Consensus 330 -------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~ 391 (538)
T 3ozx_A 330 -------QILSYKPQRIFPNYDGTVQQYLENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGEL 391 (538)
T ss_dssp -------CCEEEECSSCCCCCSSBHHHHHHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHH
T ss_pred -------EEEEEECHHCCCCCCCCHHHHHHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHH
T ss_conf -------456761400034547779999987553112--11----69999999987599778628932-----2799999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEEC
Q ss_conf 999999999519968799499999999999999999999863-8979999964889889985205240005-95799987
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVG 913 (1275)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~-~g~~~~~g 913 (1275)
|||+||++|+.+|++|+|||||+|||+.+...+++.|+++++ .|.|||+++|+.. ++....|++++|.. .|.....+
T Consensus 392 QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~ 470 (538)
T 3ozx_A 392 QKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLAT 470 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCC
T ss_conf 99999999970899899969865799999999999999999738989999958899-99996899999969851011679
Q ss_pred CCCCCCHHHHHHHHCC
Q ss_conf 9986502799887419
Q 000808 914 PLGRHSCHLIRYFEGI 929 (1275)
Q Consensus 914 ~~~~~~~~~~~yf~~~ 929 (1275)
++.........|+...
T Consensus 471 ~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 471 SPVTLKTGMNEFLREL 486 (538)
T ss_dssp CCEEHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 8477887888887416
No 6
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=428.29 Aligned_cols=205 Identities=23% Similarity=0.279 Sum_probs=163.3
Q ss_pred CEEEEEEEEEEEECCCHHHHCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCC
Q ss_conf 08999969999814602332046545322112138999477399999699996899999897899996189999993910
Q 000808 676 HSLTFDEVTYSVDMPKEMKLQGILEDKLMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYP 755 (1275)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~ 755 (1275)
..++.+|+++.+. ...|+++++.+++||++||+||||||||||+++|+|...+ ..|+|.+
T Consensus 286 ~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~---- 345 (538)
T 1yqt_A 286 TLVTYPRLVKDYG--------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW---- 345 (538)
T ss_dssp EEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----
T ss_pred EEEEEEEEEEEEC--------------CEEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----
T ss_conf 1899930799989--------------9899907441289989999889999999999999679989--9718998----
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 78333444499963689889999999999998760599999988999999999999299743334346898887798898
Q 000808 756 KKQETFTRISGYCEQNDIHSPFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQR 835 (1275)
Q Consensus 756 ~~~~~~~~~~~yv~q~~~~~~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGer 835 (1275)
...++|++|+....+.+||.|++......... ..+.++++++.+++.+..+..++ .||||||
T Consensus 346 ------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~ 407 (538)
T 1yqt_A 346 ------DLTVAYKPQYIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGEL 407 (538)
T ss_dssp ------CCCEEEECSSCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHH
T ss_pred ------CCEEEEEECCCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHH
T ss_conf ------74699982677678888599999864036887-------89999999997499156539944-----4899999
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEEC
Q ss_conf 999999999519968799499999999999999999999863-8979999964889889985205240005-95799987
Q 000808 836 KRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVG 913 (1275)
Q Consensus 836 kr~~ia~~l~~~p~il~lDEptsgLD~~~~~~i~~~l~~~~~-~~~tvi~~~H~p~~~~~~~fd~~~~l~~-~g~~~~~g 913 (1275)
||++||++|+.+|++|+|||||+|||..+...+.+.|+++++ .|.|||+++|+.. ++....|++++|.. .|+.+..|
T Consensus 408 qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g 486 (538)
T 1yqt_A 408 QRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRAL 486 (538)
T ss_dssp HHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECC
T ss_conf 99999999972899899939801089999999999999999867989999939899-99996899999908831574048
Q ss_pred CCCCCC
Q ss_conf 998650
Q 000808 914 PLGRHS 919 (1275)
Q Consensus 914 ~~~~~~ 919 (1275)
++.+..
T Consensus 487 ~~~~~~ 492 (538)
T 1yqt_A 487 PPMGMR 492 (538)
T ss_dssp CCEEHH
T ss_pred CHHHHH
T ss_conf 989997
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=422.33 Aligned_cols=196 Identities=27% Similarity=0.327 Sum_probs=142.2
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHC----------C-CCC------C--EEEEEEEECCCCCCCCCC--
Q ss_conf 221121389994773999996999968999998978----------9-999------6--189999993910783334--
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAG----------R-KTG------G--YITGNITISGYPKKQETF-- 761 (1275)
Q Consensus 703 ~~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~g----------~-~~~------~--~~~G~i~~~g~~~~~~~~-- 761 (1275)
..+|+|+|+.+++||+++|+||||||||||++++.+ . ..+ + ...+.+.+++.+......
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~~~~i~~~~~~~~~~~~~~ 414 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSN 414 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGCSEEEECCSSCSCSSTTCC
T ss_pred CCCCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 01234541674589889999117988889999998998887754202454443210121246752674056677887764
Q ss_pred ------------------------------------------CCEEEEECCCCCCC------------------------
Q ss_conf ------------------------------------------44499963689889------------------------
Q 000808 762 ------------------------------------------TRISGYCEQNDIHS------------------------ 775 (1275)
Q Consensus 762 ------------------------------------------~~~~~yv~q~~~~~------------------------ 775 (1275)
....|++.|+..+.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (670)
T 3ux8_A 415 PATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTY 494 (670)
T ss_dssp HHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCCB
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHEEE
T ss_conf 15342046789998612513333166611144357777565135663474202225555110565567554744442021
Q ss_pred --------CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf --------999999999998760599999988999999999999299743-33434689888779889899999999951
Q 000808 776 --------PFVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPL-RQSLVGLPGESGLSTEQRKRLTIAVELVA 846 (1275)
Q Consensus 776 --------~~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~-~~~~~g~~~~~~lSgGerkr~~ia~~l~~ 846 (1275)
..+||+|++.|.... . ....+.+.+..+++... .+..+ ..|||||||||+||++|+.
T Consensus 495 ~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~~ 560 (670)
T 3ux8_A 495 KGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHR 560 (670)
T ss_dssp TTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHCCHHHHHHHHHHH-------H--HHHHHHHHHHHCCCCHHHCCCCC-----HHCCHHHHHHHHHHHHHHH
T ss_conf 57778887647799999999874-------6--57899999998699601204970-----1289999999999999960
Q ss_pred CC---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEE------ECCCEEEEECCC
Q ss_conf 99---6879949999999999999999999986389799999648898899852052400------059579998799
Q 000808 847 NP---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLM------KRGGQEIYVGPL 915 (1275)
Q Consensus 847 ~p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l------~~~g~~~~~g~~ 915 (1275)
+| ++|+|||||+|||+.+...+++.++++.+.|.|||+++|++ +.....|++++| . +|+++..|++
T Consensus 561 ~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~--~~~~~~d~i~~l~~~~g~~-~G~i~~~g~~ 635 (670)
T 3ux8_A 561 RSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL--DVIKTADYIIDLGPEGGDR-GGQIVAVGTP 635 (670)
T ss_dssp CCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGG-CCEEEEEECH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCC-CCEEEEECCH
T ss_conf 8889948999698779999999999999999997799899995988--9998599999965776788-9889996699
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=421.63 Aligned_cols=201 Identities=18% Similarity=0.194 Sum_probs=157.0
Q ss_pred CEEECEEEEEECC-----EEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 2112138999477-----39999969999689999989789999618999999391078333444499963689889999
Q 000808 704 MLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFTRISGYCEQNDIHSPFV 778 (1275)
Q Consensus 704 ~il~~vs~~i~~G-----~~~~i~G~sGsGKsTll~~l~g~~~~~~~~G~i~~~g~~~~~~~~~~~~~yv~q~~~~~~~l 778 (1275)
.+++++++.+++| |+++|+||||||||||+++|+|...+ .+|+ ... ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~------~~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQ------DIP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCC------CCC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC------CCC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--7885------866----77379860544445786
Q ss_pred CHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99999999876059999998899999999999929974333434689888779889899999999951996879949999
Q 000808 779 TVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVANPSIIFMDEPTS 858 (1275)
Q Consensus 779 tv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~p~il~lDEpts 858 (1275)
||+|++... .+. ... ....++++++.+++.+..+..++ .|||||||||+||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---68999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHHHHHEEEC-CCEEEEECCCCCCCHHHHHHHHCC
Q ss_conf 999999999999999986-38979999964889889985205240005-957999879986502799887419
Q 000808 859 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFESFDELFLMKR-GGQEIYVGPLGRHSCHLIRYFEGI 929 (1275)
Q Consensus 859 gLD~~~~~~i~~~l~~~~-~~~~tvi~~~H~p~~~~~~~fd~~~~l~~-~g~~~~~g~~~~~~~~~~~yf~~~ 929 (1275)
|||+.+...+++.++++. +.|.|||+++|+.. ++....|++++|.. .|+.+..|++.+..+....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=346.92 Aligned_cols=199 Identities=27% Similarity=0.410 Sum_probs=144.4
Q ss_pred CCEEECEEEEEECCEEEEEECCCCCCHHHHH---------HHHHCCC--CCC--EEEE------EEEECCCCCCCCC---
Q ss_conf 2211213899947739999969999689999---------9897899--996--1899------9999391078333---
Q 000808 703 LMLLNGVSGAFRPGVLTALMGVSGAGKTTLM---------DVLAGRK--TGG--YITG------NITISGYPKKQET--- 760 (1275)
Q Consensus 703 ~~il~~vs~~i~~G~~~~i~G~sGsGKsTll---------~~l~g~~--~~~--~~~G------~i~~~g~~~~~~~--- 760 (1275)
...|+|+|+.+++|++++|+|+||||||||+ +.+.+.. .++ ...| .+.++..+.....
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred CCCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC
T ss_conf 44336531287189599999258888154577777789998740344566653333551011425763156556655556
Q ss_pred ------------------------------C-----------CCEEEEECCCCCCCC-----------------------
Q ss_conf ------------------------------4-----------444999636898899-----------------------
Q 000808 761 ------------------------------F-----------TRISGYCEQNDIHSP----------------------- 776 (1275)
Q Consensus 761 ------------------------------~-----------~~~~~yv~q~~~~~~----------------------- 776 (1275)
| ..-.|++.++..++|
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf 43022367889998612668775045554311114666443236763487741016761563220146435666554301
Q ss_pred ---------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---------99999999998760599999988999999999999299743334346898887798898999999999519
Q 000808 777 ---------FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNPLRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847 (1275)
Q Consensus 777 ---------~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~ 847 (1275)
.+||.|++.|.... .....+.++++.+||.... .+.+ ...||||||||+.||++|+.+
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~ 823 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKR 823 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHCCHHHHHHHHHCC---------HHHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHC
T ss_conf 56777877407799999987515---------0589999999981886333---1687-157999999999999999628
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE-----CCCEEEEECCCC
Q ss_conf 9---68799499999999999999999999863897999996488988998520524000-----595799987998
Q 000808 848 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-----RGGQEIYVGPLG 916 (1275)
Q Consensus 848 p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~-----~~g~~~~~g~~~ 916 (1275)
| ++++|||||+|||+.+...+++.|+++.+.|.|||+++|++ +.....|++++|. ++|+++..|+++
T Consensus 824 p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 824 DTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 788978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=1.00 E-value=1 Score=323.14 Aligned_cols=196 Identities=29% Similarity=0.371 Sum_probs=146.7
Q ss_pred CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHH-C----C-----CCCC---EEEE------EEEECCCCCCCCC----
Q ss_conf 2112138999477399999699996899999897-8----9-----9996---1899------9999391078333----
Q 000808 704 MLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLA-G----R-----KTGG---YITG------NITISGYPKKQET---- 760 (1275)
Q Consensus 704 ~il~~vs~~i~~G~~~~i~G~sGsGKsTll~~l~-g----~-----~~~~---~~~G------~i~~~g~~~~~~~---- 760 (1275)
..|+|||+.+++|++++|+|+||||||||++.+. | . ...| .+.| .|.+++.++....
T Consensus 638 ~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~p 717 (972)
T 2r6f_A 638 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNP 717 (972)
T ss_dssp SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCH
T ss_pred CCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 56466259986898999992799988999999999999876247777888501422643445389975844466755560
Q ss_pred ------------------CCCEEEEECCCCCCC----------------------C------------------------
Q ss_conf ------------------444499963689889----------------------9------------------------
Q 000808 761 ------------------FTRISGYCEQNDIHS----------------------P------------------------ 776 (1275)
Q Consensus 761 ------------------~~~~~~yv~q~~~~~----------------------~------------------------ 776 (1275)
..+..||++|...+. +
T Consensus 718 aty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~ 797 (972)
T 2r6f_A 718 ATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYK 797 (972)
T ss_dssp HHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBT
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHCCCCCCCCCCCCCCCCCCCHHHHHHCC
T ss_conf 12213789999986118898872545432443555565521246650341011166531002112464334022333106
Q ss_pred --------CCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf --------9999999999876059999998899999999999929974-3334346898887798898999999999519
Q 000808 777 --------FVTVYESLLYSAWLRLPPEVDSETQKMFIEEIMELVELNP-LRQSLVGLPGESGLSTEQRKRLTIAVELVAN 847 (1275)
Q Consensus 777 --------~ltv~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~l~l~~-~~~~~~g~~~~~~lSgGerkr~~ia~~l~~~ 847 (1275)
.+|+.|++.|... . .. ...+.++++.++|.. ..+..+ ..||||||||+.||++|+.+
T Consensus 798 g~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~ 863 (972)
T 2r6f_A 798 GKNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRR 863 (972)
T ss_dssp TBCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSC
T ss_pred CCCHHHHHHCCHHHHHHHHHC------C-HH--HHHHHHHHHHCCCCCCCCCCCH-----HHCCHHHHHHHHHHHHHHCC
T ss_conf 777787650679999998751------3-36--8999999998599821102704-----01999999999999999538
Q ss_pred C---CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHEEE-----CCCEEEEECCC
Q ss_conf 9---68799499999999999999999999863897999996488988998520524000-----59579998799
Q 000808 848 P---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFESFDELFLMK-----RGGQEIYVGPL 915 (1275)
Q Consensus 848 p---~il~lDEptsgLD~~~~~~i~~~l~~~~~~~~tvi~~~H~p~~~~~~~fd~~~~l~-----~~g~~~~~g~~ 915 (1275)
| ++++|||||+|||..+...+++.|+++.+.|.|||+++|++ +.....|++++|. ++|+++..|++
T Consensus 864 p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl--~~i~~aDrIivL~p~gG~~~G~Iv~~g~~ 937 (972)
T 2r6f_A 864 SNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNL--DVIKTADYIIDLGPEGGDRGGQIVAVGTP 937 (972)
T ss_dssp CCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEECSSSTTSCCSEEEEESH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH--HHHHHCCEEEEECCCCCCCCCEEEEECCH
T ss_conf 889988999798789999999999999999996799899986887--99984999999767777789889986599
Done!