Query 000809
Match_columns 1273
No_of_seqs 433 out of 1813
Neff 5.3
Searched_HMMs 46136
Date Mon Apr 1 23:51:19 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000809.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000809hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4692 Predicted E3 ubiquitin 100.0 4.5E-81 9.7E-86 681.7 29.4 415 845-1266 2-470 (489)
2 COG5113 UFD2 Ubiquitin fusion 100.0 4E-60 8.8E-65 545.1 30.0 472 750-1267 373-906 (929)
3 PF10408 Ufd2P_core: Ubiquitin 100.0 3.7E-58 8E-63 566.4 33.8 403 749-1198 172-629 (629)
4 KOG2042 Ubiquitin fusion degra 100.0 4.5E-55 9.8E-60 535.1 29.4 471 752-1264 400-917 (943)
5 KOG0349 Putative DEAD-box RNA 100.0 4.6E-30 1E-34 288.9 12.9 222 46-285 30-264 (725)
6 KOG2626 Histone H3 (Lys4) meth 99.9 2.3E-27 5E-32 275.0 14.1 194 104-306 288-532 (544)
7 smart00449 SPRY Domain in SPla 99.8 1E-20 2.3E-25 185.9 14.9 118 146-266 1-121 (122)
8 PF00622 SPRY: SPRY domain; I 99.8 1.1E-20 2.5E-25 185.1 14.0 120 146-268 1-124 (124)
9 KOG4030 Uncharacterized conser 99.7 8E-16 1.7E-20 154.6 16.1 160 107-279 27-190 (197)
10 KOG2243 Ca2+ release channel ( 99.6 2.9E-16 6.4E-21 188.9 10.9 158 140-302 1099-1272(5019)
11 KOG2242 Scaffold/matrix specif 99.6 3.1E-16 6.8E-21 190.0 -0.6 545 182-784 8-555 (558)
12 KOG3953 SOCS box protein SSB-1 99.5 3.9E-13 8.5E-18 144.3 13.8 164 109-279 27-208 (242)
13 KOG4367 Predicted Zn-finger pr 99.4 6.6E-13 1.4E-17 150.6 13.1 153 108-267 534-695 (699)
14 KOG2243 Ca2+ release channel ( 99.3 1.6E-12 3.5E-17 157.6 3.1 152 123-279 644-828 (5019)
15 PF13920 zf-C3HC4_3: Zinc fing 99.0 2.3E-10 4.9E-15 97.2 3.0 49 1217-1265 1-50 (50)
16 PLN03208 E3 ubiquitin-protein 98.9 8.6E-10 1.9E-14 117.3 3.6 61 1211-1271 11-89 (193)
17 PF04564 U-box: U-box domain; 98.9 1.5E-09 3.3E-14 99.4 3.7 50 1215-1264 1-51 (73)
18 smart00504 Ubox Modified RING 98.8 3.3E-09 7.1E-14 93.5 3.8 46 1218-1263 1-46 (63)
19 PF15227 zf-C3HC4_4: zinc fing 98.7 9.3E-09 2E-13 84.7 3.1 38 1221-1258 1-42 (42)
20 KOG0823 Predicted E3 ubiquitin 98.7 7.5E-09 1.6E-13 112.0 3.2 56 1215-1270 44-104 (230)
21 KOG1477 SPRY domain-containing 98.7 4E-08 8.7E-13 118.2 9.0 162 108-275 31-212 (469)
22 PF13923 zf-C3HC4_2: Zinc fing 98.6 1.7E-08 3.7E-13 81.5 2.6 38 1221-1258 1-39 (39)
23 PHA02929 N1R/p28-like protein; 98.6 3.2E-08 6.9E-13 109.4 3.9 52 1216-1267 172-231 (238)
24 KOG0317 Predicted E3 ubiquitin 98.5 4.7E-08 1E-12 108.6 3.2 48 1218-1265 239-286 (293)
25 PF13639 zf-RING_2: Ring finge 98.4 7.4E-08 1.6E-12 79.7 1.7 40 1220-1259 2-44 (44)
26 KOG4172 Predicted E3 ubiquitin 98.4 3.9E-08 8.3E-13 83.8 -0.6 51 1219-1269 8-60 (62)
27 TIGR00599 rad18 DNA repair pro 98.4 1.7E-07 3.6E-12 110.4 3.6 52 1213-1264 21-72 (397)
28 PHA02926 zinc finger-like prot 98.2 5.6E-07 1.2E-11 97.1 2.9 52 1216-1267 168-234 (242)
29 PF00097 zf-C3HC4: Zinc finger 98.2 8.5E-07 1.8E-11 72.0 2.7 38 1221-1258 1-41 (41)
30 KOG0320 Predicted E3 ubiquitin 98.2 6.2E-07 1.3E-11 93.8 2.2 47 1218-1264 131-179 (187)
31 cd00162 RING RING-finger (Real 98.1 2.1E-06 4.5E-11 69.3 3.3 43 1220-1262 1-45 (45)
32 KOG0287 Postreplication repair 98.1 9.7E-07 2.1E-11 99.3 1.6 47 1219-1265 24-70 (442)
33 KOG4265 Predicted E3 ubiquitin 98.1 1.7E-06 3.7E-11 99.1 2.9 53 1218-1270 290-343 (349)
34 COG5432 RAD18 RING-finger-cont 98.0 1.6E-06 3.5E-11 95.8 1.9 47 1219-1265 26-72 (391)
35 PF14634 zf-RING_5: zinc-RING 98.0 3.5E-06 7.6E-11 70.0 3.0 41 1220-1260 1-44 (44)
36 smart00184 RING Ring finger. E 98.0 4.6E-06 1E-10 64.9 3.2 38 1221-1258 1-39 (39)
37 PF13445 zf-RING_UBOX: RING-ty 98.0 2.9E-06 6.3E-11 70.4 1.7 30 1221-1251 1-34 (43)
38 KOG4275 Predicted E3 ubiquitin 98.0 1.4E-06 3E-11 96.7 -0.8 48 1218-1269 300-348 (350)
39 KOG2177 Predicted E3 ubiquitin 97.9 4.3E-06 9.3E-11 92.0 1.8 45 1215-1259 10-54 (386)
40 KOG2164 Predicted E3 ubiquitin 97.9 6.4E-06 1.4E-10 97.9 2.5 52 1218-1269 186-244 (513)
41 COG5574 PEX10 RING-finger-cont 97.9 5.8E-06 1.3E-10 91.4 2.0 46 1218-1263 215-262 (271)
42 COG5243 HRD1 HRD ubiquitin lig 97.9 1.4E-05 3.1E-10 91.0 5.2 47 1215-1261 284-343 (491)
43 PF12678 zf-rbx1: RING-H2 zinc 97.7 2.5E-05 5.5E-10 71.9 3.6 42 1218-1259 19-73 (73)
44 KOG0824 Predicted E3 ubiquitin 97.7 1.5E-05 3.2E-10 89.4 1.7 49 1218-1266 7-56 (324)
45 KOG0802 E3 ubiquitin ligase [P 97.6 2.6E-05 5.6E-10 96.6 1.5 46 1216-1261 289-339 (543)
46 PF14835 zf-RING_6: zf-RING of 97.6 2.5E-05 5.4E-10 69.7 1.0 41 1219-1261 8-49 (65)
47 KOG1477 SPRY domain-containing 97.5 2E-05 4.3E-10 95.4 0.4 89 185-278 1-92 (469)
48 KOG1571 Predicted E3 ubiquitin 97.5 4.5E-05 9.8E-10 87.8 1.9 52 1214-1269 301-353 (355)
49 KOG0978 E3 ubiquitin ligase in 97.5 5.5E-05 1.2E-09 94.0 2.5 50 1219-1268 644-696 (698)
50 KOG1785 Tyrosine kinase negati 97.4 6.6E-05 1.4E-09 86.3 1.4 49 1219-1267 370-420 (563)
51 KOG4628 Predicted E3 ubiquitin 97.3 0.00014 3.1E-09 84.3 3.8 48 1219-1266 230-281 (348)
52 KOG4159 Predicted E3 ubiquitin 97.3 0.00012 2.6E-09 86.8 2.6 52 1213-1264 79-130 (398)
53 COG5540 RING-finger-containing 97.2 0.00016 3.5E-09 81.1 2.6 45 1219-1263 324-372 (374)
54 KOG0311 Predicted E3 ubiquitin 97.2 5.9E-05 1.3E-09 86.3 -1.5 52 1216-1267 41-94 (381)
55 KOG2879 Predicted E3 ubiquitin 96.9 0.00059 1.3E-08 76.1 3.5 54 1213-1266 234-290 (298)
56 KOG2660 Locus-specific chromos 96.9 0.00027 5.8E-09 80.7 0.1 54 1214-1267 11-65 (331)
57 KOG1039 Predicted E3 ubiquitin 96.8 0.00059 1.3E-08 79.6 2.3 53 1216-1268 159-226 (344)
58 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0013 2.8E-08 62.3 3.2 47 1217-1263 20-82 (85)
59 COG5222 Uncharacterized conser 96.5 0.0021 4.5E-08 72.0 3.8 75 1183-1260 242-318 (427)
60 KOG0297 TNF receptor-associate 96.2 0.0026 5.6E-08 76.1 2.4 52 1215-1266 18-70 (391)
61 PF14447 Prok-RING_4: Prokaryo 96.1 0.0022 4.7E-08 55.9 1.1 46 1217-1264 6-51 (55)
62 COG5236 Uncharacterized conser 96.0 0.0042 9.1E-08 70.9 3.0 52 1215-1266 58-111 (493)
63 PF11789 zf-Nse: Zinc-finger o 95.9 0.0048 1E-07 54.5 2.3 42 1216-1257 9-53 (57)
64 TIGR00570 cdk7 CDK-activating 95.7 0.0061 1.3E-07 70.2 2.8 30 1235-1264 25-55 (309)
65 COG5152 Uncharacterized conser 95.4 0.0071 1.5E-07 64.7 1.6 44 1218-1261 196-239 (259)
66 KOG1813 Predicted E3 ubiquitin 95.2 0.0072 1.6E-07 68.4 1.1 48 1218-1265 241-288 (313)
67 PF04641 Rtf2: Rtf2 RING-finge 95.0 0.021 4.6E-07 64.9 4.2 56 1216-1272 111-172 (260)
68 KOG0828 Predicted E3 ubiquitin 94.8 0.013 2.7E-07 69.9 1.7 47 1217-1263 570-634 (636)
69 KOG1734 Predicted RING-contain 94.6 0.013 2.8E-07 65.5 0.9 48 1217-1264 223-282 (328)
70 KOG2242 Scaffold/matrix specif 94.5 0.0074 1.6E-07 75.0 -1.1 115 160-279 107-226 (558)
71 KOG1002 Nucleotide excision re 94.2 0.017 3.7E-07 69.1 1.0 48 1216-1263 534-586 (791)
72 KOG3039 Uncharacterized conser 94.1 0.035 7.7E-07 61.4 3.0 49 1217-1265 220-272 (303)
73 KOG0825 PHD Zn-finger protein 94.0 0.014 3.1E-07 72.4 -0.3 52 1218-1269 123-177 (1134)
74 KOG0804 Cytoplasmic Zn-finger 93.9 0.024 5.1E-07 67.3 1.4 45 1217-1263 174-222 (493)
75 PF14570 zf-RING_4: RING/Ubox 93.4 0.051 1.1E-06 46.5 2.2 43 1221-1263 1-48 (48)
76 KOG1001 Helicase-like transcri 93.4 0.032 7E-07 70.9 1.3 46 1219-1265 455-502 (674)
77 KOG0826 Predicted E3 ubiquitin 92.6 0.095 2E-06 60.4 3.5 47 1216-1262 298-345 (357)
78 KOG1100 Predicted E3 ubiquitin 92.2 0.069 1.5E-06 58.9 1.7 44 1221-1268 161-205 (207)
79 COG5219 Uncharacterized conser 92.1 0.052 1.1E-06 68.8 0.7 47 1218-1264 1469-1524(1525)
80 PF11793 FANCL_C: FANCL C-term 91.8 0.081 1.8E-06 48.6 1.4 46 1218-1263 2-66 (70)
81 smart00744 RINGv The RING-vari 91.4 0.15 3.4E-06 43.7 2.6 40 1220-1259 1-49 (49)
82 COG5194 APC11 Component of SCF 90.6 0.23 4.9E-06 46.6 3.0 44 1219-1262 32-80 (88)
83 PF05883 Baculo_RING: Baculovi 90.4 0.16 3.4E-06 52.2 2.1 44 1218-1261 26-78 (134)
84 KOG2932 E3 ubiquitin ligase in 90.0 0.096 2.1E-06 59.7 0.1 35 1232-1268 105-139 (389)
85 KOG1814 Predicted E3 ubiquitin 90.0 0.34 7.4E-06 57.5 4.6 42 1218-1259 184-236 (445)
86 COG5175 MOT2 Transcriptional r 88.9 0.22 4.8E-06 57.3 1.9 49 1216-1264 12-65 (480)
87 KOG2817 Predicted E3 ubiquitin 88.7 0.28 6.1E-06 58.1 2.7 43 1219-1261 335-383 (394)
88 KOG3002 Zn finger protein [Gen 87.6 0.33 7.2E-06 56.4 2.4 47 1217-1266 47-94 (299)
89 KOG3161 Predicted E3 ubiquitin 84.2 0.38 8.3E-06 59.4 0.7 39 1219-1260 12-54 (861)
90 KOG4185 Predicted E3 ubiquitin 80.8 0.8 1.7E-05 52.8 1.7 34 1229-1262 20-54 (296)
91 PF13765 PRY: SPRY-associated 80.6 1.5 3.3E-05 37.4 2.9 23 109-131 1-23 (49)
92 PF10367 Vps39_2: Vacuolar sor 78.6 2.4 5.3E-05 41.0 4.0 34 1214-1247 74-109 (109)
93 KOG3113 Uncharacterized conser 75.8 1.8 3.9E-05 48.7 2.4 55 1217-1273 110-170 (293)
94 KOG1428 Inhibitor of type V ad 75.3 1.6 3.5E-05 58.0 2.0 50 1217-1266 3485-3547(3738)
95 PF10272 Tmpp129: Putative tra 74.6 4.9 0.00011 48.0 5.7 73 1189-1265 245-355 (358)
96 PF05290 Baculo_IE-1: Baculovi 73.6 6.8 0.00015 40.5 5.6 50 1217-1266 79-135 (140)
97 COG5220 TFB3 Cdk activating ki 72.9 1.1 2.3E-05 50.0 -0.2 46 1216-1261 8-62 (314)
98 KOG4362 Transcriptional regula 72.2 1.1 2.3E-05 56.9 -0.5 46 1219-1264 22-70 (684)
99 KOG2068 MOT2 transcription fac 71.4 2.5 5.4E-05 49.5 2.2 48 1219-1266 250-301 (327)
100 KOG1493 Anaphase-promoting com 69.9 1.8 3.9E-05 40.6 0.6 45 1219-1263 32-81 (84)
101 KOG1941 Acetylcholine receptor 68.4 4.2 9.1E-05 48.2 3.2 46 1219-1264 366-417 (518)
102 KOG2930 SCF ubiquitin ligase, 66.5 3.2 6.9E-05 41.0 1.5 28 1234-1261 79-106 (114)
103 smart00588 NEUZ domain in neur 63.5 1.1E+02 0.0024 31.4 11.9 97 116-228 9-123 (123)
104 KOG2113 Predicted RNA binding 62.9 5.5 0.00012 46.2 2.7 50 1219-1270 344-394 (394)
105 PF02891 zf-MIZ: MIZ/SP-RING z 62.7 6.1 0.00013 34.2 2.4 43 1219-1261 3-50 (50)
106 PF07800 DUF1644: Protein of u 61.0 4.3 9.3E-05 43.1 1.4 21 1217-1237 1-21 (162)
107 KOG3039 Uncharacterized conser 61.0 4.7 0.0001 45.4 1.7 36 1216-1251 41-76 (303)
108 KOG0298 DEAD box-containing he 60.6 2.5 5.4E-05 56.6 -0.5 46 1216-1261 1151-1197(1394)
109 COG5109 Uncharacterized conser 60.4 5.1 0.00011 46.4 2.0 42 1219-1260 337-384 (396)
110 KOG3800 Predicted E3 ubiquitin 56.4 6.3 0.00014 45.5 1.8 28 1235-1262 22-50 (300)
111 KOG3799 Rab3 effector RIM1 and 56.4 8.3 0.00018 39.8 2.5 43 1215-1261 62-116 (169)
112 PHA03096 p28-like protein; Pro 56.0 4.8 0.00011 46.7 0.9 43 1219-1261 179-232 (284)
113 smart00589 PRY associated with 54.1 14 0.00031 31.0 3.2 25 108-132 3-27 (52)
114 KOG4642 Chaperone-dependent E3 53.5 15 0.00032 41.8 4.1 53 1213-1265 206-259 (284)
115 KOG3842 Adaptor protein Pellin 53.1 11 0.00024 43.8 3.0 48 1217-1264 340-415 (429)
116 KOG2114 Vacuolar assembly/sort 52.5 16 0.00035 47.5 4.6 47 1218-1267 840-887 (933)
117 PHA02825 LAP/PHD finger-like p 51.5 14 0.0003 39.5 3.2 50 1215-1265 5-61 (162)
118 KOG0827 Predicted E3 ubiquitin 51.2 7.5 0.00016 46.3 1.4 25 1235-1259 25-52 (465)
119 PHA02862 5L protein; Provision 51.0 12 0.00026 39.3 2.7 44 1219-1263 3-53 (156)
120 KOG2034 Vacuolar sorting prote 50.6 27 0.00058 45.9 6.1 35 1216-1250 815-851 (911)
121 KOG4185 Predicted E3 ubiquitin 49.1 6.4 0.00014 45.4 0.4 44 1218-1261 207-265 (296)
122 KOG0825 PHD Zn-finger protein 48.8 8.5 0.00018 49.2 1.4 52 1216-1267 94-158 (1134)
123 PF07177 Neuralized: Neuralize 47.4 68 0.0015 29.7 6.7 52 116-168 9-67 (69)
124 PLN02189 cellulose synthase 46.7 15 0.00034 49.0 3.3 49 1218-1266 34-90 (1040)
125 KOG3579 Predicted E3 ubiquitin 43.9 9 0.00019 44.0 0.5 33 1218-1250 268-304 (352)
126 KOG1940 Zn-finger protein [Gen 41.8 12 0.00026 43.3 1.2 47 1219-1266 159-209 (276)
127 KOG1812 Predicted E3 ubiquitin 41.2 12 0.00027 45.2 1.2 33 1218-1250 146-182 (384)
128 PF03854 zf-P11: P-11 zinc fin 37.4 16 0.00034 31.7 0.9 32 1233-1264 15-47 (50)
129 KOG1815 Predicted E3 ubiquitin 37.1 19 0.00041 44.4 1.9 36 1216-1251 68-104 (444)
130 PF14569 zf-UDP: Zinc-binding 36.2 34 0.00074 32.5 2.9 50 1217-1266 8-65 (80)
131 PF04216 FdhE: Protein involve 33.1 13 0.00029 43.1 -0.3 44 1218-1261 172-220 (290)
132 KOG4445 Uncharacterized conser 32.0 14 0.0003 42.9 -0.4 47 1218-1264 115-187 (368)
133 PLN02436 cellulose synthase A 30.7 39 0.00084 45.6 3.2 49 1218-1266 36-92 (1094)
134 PF05605 zf-Di19: Drought indu 27.0 30 0.00064 30.2 0.9 40 1217-1263 1-42 (54)
135 KOG1645 RING-finger-containing 26.7 38 0.00082 41.0 2.0 33 1229-1261 20-54 (463)
136 KOG3268 Predicted E3 ubiquitin 26.5 42 0.0009 36.4 2.0 46 1219-1264 166-229 (234)
137 PF07191 zinc-ribbons_6: zinc- 25.6 16 0.00035 34.1 -1.0 44 1218-1266 1-44 (70)
138 COG5183 SSM4 Protein involved 25.1 43 0.00094 43.5 2.2 48 1216-1263 10-66 (1175)
139 PLN02638 cellulose synthase A 23.9 59 0.0013 44.0 3.2 48 1218-1265 17-72 (1079)
140 PLN02400 cellulose synthase 23.2 52 0.0011 44.5 2.5 53 1218-1270 36-99 (1085)
141 PRK03564 formate dehydrogenase 22.9 40 0.00086 39.9 1.2 45 1217-1261 186-235 (309)
142 KOG4218 Nuclear hormone recept 22.3 49 0.0011 39.1 1.8 15 1216-1230 13-27 (475)
143 TIGR01562 FdhE formate dehydro 22.3 30 0.00064 40.8 0.0 44 1218-1261 184-233 (305)
144 PF04048 Sec8_exocyst: Sec8 ex 21.9 9.2E+02 0.02 25.2 11.1 82 746-828 47-133 (142)
No 1
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-81 Score=681.71 Aligned_cols=415 Identities=41% Similarity=0.682 Sum_probs=360.2
Q ss_pred HHHHHh----hcccCCCCCcccccchHHHHHHHHHHHHhhccCCCCC--CchhhhhhhHHHHHHHHHhhcCCCCccChhh
Q 000809 845 VWVVQL----LLVLSKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFV--PSTIFIKQGLASFVTFVVTHFNDPRISSADL 918 (1273)
Q Consensus 845 ~WLlrl----~~~~s~~~~~F~~lPEfylE~ivd~f~~l~r~~p~~v--~~~~~~~~~l~~~v~Fl~~~l~~~rIvNP~L 918 (1273)
+||++. +..+|+++++|+|+||+|+.++...+.+++.|..+.- ...+.+++.++..++||+.|++|||||..++
T Consensus 2 ~wll~~~lrtl~~~~~tgslfsfvpe~yvn~~~~~~~av~d~~~~l~a~~e~~~~e~sv~~~a~~l~~h~ad~riv~a~~ 81 (489)
T KOG4692|consen 2 IWLLERMLRTLTTASNTGSLFSFVPEVYVNTLPILLDAVMDFSHDLKAQFEASDAECSVNAAAEFLGIHSADPRIVLASC 81 (489)
T ss_pred hHHHHHHHHHhhccCCCcchhhhchHHHHHhhHHHHHHHHHhCcchhhhhcCCCchhhHHHHHHHHhhccCCceeeechh
Confidence 588875 4478999999999999999998888777776664322 2344468899999999999999999999999
Q ss_pred HHHHHHHHHhhhcchhHHHHHhcC-HHHHHhhHHHHHhhccccccchhhHHHHHhhcCCCCcccccCC------------
Q 000809 919 RDLLLQSISVLVQYKDYLAAFESN-EAATLRLPKALISAFDNRSWIPVTNILLRLCKGHGFGSSKHGE------------ 985 (1273)
Q Consensus 919 Ka~Lvq~L~~l~~~~~~~~~~e~~-~~a~~~Lv~aLL~~Y~~R~wi~~~~IL~r~w~g~gF~~rk~~~------------ 985 (1273)
||+|+|+|++++|||.+++++|+. +.++..|++|||++|+||.|||+||||+|||+|+||+|++++.
T Consensus 82 kdsllqal~t~~c~~~~vraler~~k~sq~smvraLLapyenR~W~q~nwillRlw~G~Gf~y~~~r~phl~rsr~~n~~ 161 (489)
T KOG4692|consen 82 KDSLLQALGTLTCHKSGVRALERTSKRSQASMVRALLAPYENRSWIQVNWILLRLWKGSGFSYLKNREPHLCRSRSRNET 161 (489)
T ss_pred HHHHHHHhhheeechhhhhHHHhccHhhHHHHHHHHhhhhhcCCchhhhHHHHHHHccCCccccccCCchhhhhhhcccc
Confidence 999999999999999999999997 7899999999999999999999999999999999999996553
Q ss_pred -----CCCCcHHHHHHHHHHHhhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhH------Hhhhhchhhhhch
Q 000809 986 -----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQVSE------FQQKKCCVIFDLS 1054 (1273)
Q Consensus 986 -----~~~~s~~~q~~l~e~~~~n~~~FvrFlN~LlNdl~~lldEfl~~L~eIq~~~~~~e------~qqr~c~s~f~Ls 1054 (1273)
..+||++||++++..+.+|+++...|+|++||++||+|+||+.++||||++.|+.| +|+|+|.+||+|+
T Consensus 162 ~~sl~~p~pst~fQ~ll~a~ll~dgp~a~tFLNsvlnqLnWafsEFi~~vqEiQ~~aqr~E~~~~e~~Qlk~C~~cFeLs 241 (489)
T KOG4692|consen 162 HTSLSSPAPSTVFQALLRAALLNDGPLASTFLNSVLNQLNWAFSEFIVSVQEIQEKAQRMENTLFEPFQLKKCCVCFELS 241 (489)
T ss_pred cccccCCCchHHHHHHHHHHHhccCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhccCHHHHhHhhhhHHHH
Confidence 23589999999999999999999999999999999999999999999999877666 8999999999999
Q ss_pred HHHHHHHHHHhhhcccCcCCC----hhhHHHHHHHHHHHHHHhhcCCcccccchhcccccCCCccCCCchhhhhHHHHHH
Q 000809 1055 CNLTRVLEFCTHEIPQAFLSG----TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKVNRGMILAPLVGII 1130 (1273)
Q Consensus 1055 ~~tlr~Le~~T~~~p~~F~~~----~~~iv~RLa~MLny~L~~l~~~p~~~~~~~~lk~~~~~~ek~~p~~lL~~i~gIy 1130 (1273)
++++|+|||.++.+|++|+++ ++.+++||+++||++|++++.++ ++|+..|+..+|++|||+|++||++++||+
T Consensus 242 vsL~RvLEm~it~~Peifld~trpns~~Ll~ri~qllnqvlsrVt~e~--~lf~rvv~~~~~~le~V~hypil~a~~GIl 319 (489)
T KOG4692|consen 242 VSLARVLEMCITAMPEIFLDGTRPNSRRLLERILQLLNQVLSRVTDEF--FLFVRVVRRQGQPLEKVSHYPILAALVGIL 319 (489)
T ss_pred HHHHHHHHHHHHhhhHHHhcCCCCcHHHHHHHHHHHHHHHHHhhcccc--chhHHHHHhhcCChhhhcccchHHHHHHHH
Confidence 999999999999999999975 68899999999999999999876 488888898999999999999999999999
Q ss_pred HhccccccccccCcccceeeeeeccCCCchhhhhHHHHhhhccc---------------Cc-----ccCCCCHHHHHHHH
Q 000809 1131 LNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWA---------------GS-----FRGDTYLSKLGQLE 1190 (1273)
Q Consensus 1131 LNL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~---------------~~-----~~~~~~~~~i~~l~ 1190 (1273)
|||+.+++..+.+...+++..+|+.|+|+|+..+|+|+++++|. ++ +.+.++..++..++
T Consensus 320 l~Ll~~~~~S~~r~Q~~~~~~~a~l~dP~fq~~~~~ylLg~~~pdpp~p~t~~~p~pd~krfal~~~~~~~s~~e~~~V~ 399 (489)
T KOG4692|consen 320 LNLLEASEDSKPRQQHDVIGLFASLDDPDFQYYGFQYLLGYNWPDPPDPLTDGCPSPDDKRFALVKKLGQLSNFESHLVN 399 (489)
T ss_pred HHHHHhCcccCcccchhhhhhheeccCcchHHHHHHHHHhcCCCCCCCccccCCCCCCccchHHhhhhhhhhHHHHHHHH
Confidence 99999999877776665555556678899999999999999773 11 12334555566666
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1191 CFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1191 ~f~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
+..+.+.+++.+... .+ -.+.||.+|||||..+.++||.||||.+|+.||.+|+++++.|+||++.+.+++
T Consensus 400 r~~~~l~~~~~~~~~----~~-lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~~ 470 (489)
T KOG4692|consen 400 RASSQLPERKEESFN----KD-LPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDVI 470 (489)
T ss_pred HHHhhcchhhHHhhc----CC-CCCcccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeehh
Confidence 666665554443222 12 233688999999999999999999999999999999999999999999988854
No 2
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-60 Score=545.14 Aligned_cols=472 Identities=17% Similarity=0.121 Sum_probs=383.2
Q ss_pred hHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHhhHHHHHHHH
Q 000809 750 KEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE--------RACSEQLKRLKEARNNYREEVIDCV 821 (1273)
Q Consensus 750 ~~~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~--------~~~~~~~~~l~~~~~~~~e~l~~~~ 821 (1273)
=++++++.-+..-|+||...|+.-. .+-++|+.|+|-=+...+ .+-..++.|++++.+.-..
T Consensus 373 FISD~FFl~lt~~HyGv~~tf~~~e----k~g~~IrkLKE~le~e~~~~~gs~~At~lTaqlsrme~~lk~~~S------ 442 (929)
T COG5113 373 FISDIFFLYLTKIHYGVNATFTSCE----KFGEYIRKLKESLEYECRLLDGSFQATRLTAQLSRMEAYLKGIDS------ 442 (929)
T ss_pred cchhhHHhHHHHHHhccchhHHHHH----HHHHHHHHHHHHHHHHHHHhcCchhhhhHHhHHHHHHHHHhhhHH------
Confidence 3668999999999999999887654 234555544432211112 2223455555554443222
Q ss_pred HHHHHHHhhhcchhHHHHHHH----HHHHHHHhhccc-------------CCCCCcccccchHHHHHHHHHHHHhhccCC
Q 000809 822 RHCAWYRISLFSRWKQRGMYA----TCVWVVQLLLVL-------------SKVDSVFIYIPEFYLEALVDCFHVLRKSDP 884 (1273)
Q Consensus 822 r~~~w~~~~l~~~~~q~~~~~----~~~WLlrl~~~~-------------s~~~~~F~~lPEfylE~ivd~f~~l~r~~p 884 (1273)
.+..+++.++-+..|++-+. +++||.|+.++- ...|..|+|+|||+||+++||...+.++-
T Consensus 443 -~~~al~gfl~~tsl~~~~f~F~~f~t~~l~rv~dp~~typf~~~~Lp~~ENap~~fk~~pe~~ie~~~ny~l~~~k~~- 520 (929)
T COG5113 443 -KMSALNGFLFMTSLFADEFPFTDFMTEYLARVEDPWPTYPFYYKTLPWMENAPMTFKLIPEATIENALNYVLESIKDW- 520 (929)
T ss_pred -HHHHHHHHHHHhhhhhhccchHHHHHHHHHHhcCCCCCCCccccccchhcCCcchhhhchHHHhccHHHHHHHHHhcc-
Confidence 22336777777776665444 899999999852 24699999999999999999987776655
Q ss_pred CCCCchhhhhhhHHHHHHHHHhhcCCCC-ccChhhHHHHHHHHHhhh----cc-hhH-HHHHhcCHHHHHhhHHHHHhhc
Q 000809 885 PFVPSTIFIKQGLASFVTFVVTHFNDPR-ISSADLRDLLLQSISVLV----QY-KDY-LAAFESNEAATLRLPKALISAF 957 (1273)
Q Consensus 885 ~~v~~~~~~~~~l~~~v~Fl~~~l~~~r-IvNP~LKa~Lvq~L~~l~----~~-~~~-~~~~e~~~~a~~~Lv~aLL~~Y 957 (1273)
.++....-|..+++|+..+++++. |+||+||+||++.++.-. .. +++ +++|+..+.+..+|+||||+||
T Consensus 521 ----~Spif~~~L~~l~Ef~~~vl~~~~~iknp~L~~kl~~~ls~G~~~~~~~s~~~~~dif~~~kv~~r~LL~ALmaFY 596 (929)
T COG5113 521 ----RSPIFKKELEPLCEFVKIVLHRSSAIKNPMLNRKLDYYLSLGRDEMRMESRSIIHDIFKEGKVFSRWLLPALMAFY 596 (929)
T ss_pred ----cCchhhccccchhhhhhhhcccHhhhccHHHHHHHHHHHhcCcchhccCchHHHHHHHHhhhhhhhhhHHHHHhHh
Confidence 234444448899999999999985 559999999999987532 33 444 7999999999999999999999
Q ss_pred ccc-ccchhhHHHHHhhcCCCCcccccCC----CCCCcHHHHHHHHHHHhhCCCchHHHHHHHhhhhHHHHHHHHHHHHH
Q 000809 958 DNR-SWIPVTNILLRLCKGHGFGSSKHGE----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIRE 1032 (1273)
Q Consensus 958 ~~R-~wi~~~~IL~r~w~g~gF~~rk~~~----~~~~s~~~q~~l~e~~~~n~~~FvrFlN~LlNdl~~lldEfl~~L~e 1032 (1273)
+.+ .+||+++. + |+|+.|-++. ..|.-|.|.+.|..+...|-+||++|..+|+||+|++|||.+..+.|
T Consensus 597 i~iEsTGqStqf----y--dkfNirf~ic~~~~~~yK~Psy~~~L~~~~~tN~~FFVkfda~mlndlt~lLDEal~~l~E 670 (929)
T COG5113 597 IEIESTGQSTQF----Y--DKFNIRFIICMMKDFEYKQPSYSEGLSSIKDTNLPFFVKFDAKMLNDLTRLLDEALKELVE 670 (929)
T ss_pred eeeeccCcccce----e--eeccceeehhHHHHHHhcCchhhhhhhhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987 99999884 3 8899884432 23456669999999999999999999999999999999999999999
Q ss_pred HHHhhh--------------hhHHh------hhhchhhhhchHHHHHHHHHHhhhcccCcCCChhhHHHHHHHHHHHHHH
Q 000809 1033 MQEKYQ--------------VSEFQ------QKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILN 1092 (1273)
Q Consensus 1033 Iq~~~~--------------~~e~q------qr~c~s~f~Ls~~tlr~Le~~T~~~p~~F~~~~~~iv~RLa~MLny~L~ 1092 (1273)
+|+.|. ..|.| .|+|+++++|+++++.|++.++.++|++|+.+| ||+|||+||||||.
T Consensus 671 ~hniqs~Lad~~s~sn~~e~~~elq~~la~a~rqA~~sc~l~d~~~~lf~~~~~~iP~aF~~~E--iV~rla~mLNyNL~ 748 (929)
T COG5113 671 EHNIQSLLADAISNSNISERIGELQKSLAFAKRQARNSCLLVDGCFDLFTHILDEIPDAFLVDE--IVSRLARMLNYNLK 748 (929)
T ss_pred HHhHHHHHHhhhccCchhhHHHHHHHHHHHHHHhhcchheecccHHHHHHHHhhccchhhhhHH--HHHHHHHHHhCcch
Confidence 999653 23333 578999999999999999999999999999976 99999999999999
Q ss_pred hhcCCcccccchhcccccCCCccC--CCchhhhhHHHHHHHhccccccccccCcccceeeeeeccCCCchhhhhHHHHhh
Q 000809 1093 HVTSAADAEFFDLSLRRHGQSLEK--VNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLE 1170 (1273)
Q Consensus 1093 ~l~~~p~~~~~~~~lk~~~~~~ek--~~p~~lL~~i~gIyLNL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~ 1170 (1273)
.+||| | |-++||+ ||++ ||++.||..++.||+||..+++| +.|||+ |+|||.+..|.+|++
T Consensus 749 ~l~GP-K--C~~LkVk----dP~~Y~FnaK~LL~~~~~VYinl~~es~F---------veaVA~-D~rsf~~~~F~rA~~ 811 (929)
T COG5113 749 ILTGP-K--CTDLKVK----DPEQYGFNAKNLLRRMVMVYINLRSESKF---------VEAVAS-DKRSFDIDFFRRALR 811 (929)
T ss_pred hccCC-C--ccceeec----ChhhcCCCHHHHHHHHHHHhhhhcchHHH---------HHHHHc-ccccccHHHHHHHHH
Confidence 99965 4 5566777 6666 49999999999999999999999 799996 999999999999999
Q ss_pred hcccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEecCCCcc-chHHHHHhh
Q 000809 1171 YNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVPCSHRS-CHGCISRHL 1249 (1273)
Q Consensus 1171 i~~~~~~~~~~~~~~i~~l~~f~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lPCgH~~-C~~CI~~~l 1249 (1273)
|...+ .+++++.|++++.|+.++++.+.++..|++ |+++.||+|++|+|++.|+|||.||-+... .+++|+.|+
T Consensus 812 I~~~k---~L~s~~~IE~l~~f~nr~E~~r~~ea~EeE--D~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahl 886 (929)
T COG5113 812 ICENK---YLISESQIEELRSFINRLEKVRVIEAVEEE--DMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHL 886 (929)
T ss_pred HHhcc---ccCCHHHHHHHHHHHHHHHHHHHHHhhhhh--hccCCchhhhCchhhhcccCCeecccccccccHHHHHHHH
Confidence 98655 478999999999999999999876655544 689999999999999999999999988875 669999999
Q ss_pred cCCCCCCCCccc--cccccc
Q 000809 1250 LNCLRCFFCNAT--VLEVVK 1267 (1273)
Q Consensus 1250 ~~~~~CP~CR~~--i~~v~~ 1267 (1273)
+++.++||+|.| +++|++
T Consensus 887 lsd~tDPFNRmPLtlddVtp 906 (929)
T COG5113 887 LSDGTDPFNRMPLTLDDVTP 906 (929)
T ss_pred hcCCCCccccCCCchhhcCC
Confidence 999999999999 456655
No 3
>PF10408 Ufd2P_core: Ubiquitin elongating factor core; InterPro: IPR019474 This entry represents the most conserved part of the core region of ubiquitin conjugation factor E4 (or Ub elongating factor, or Ufd2P), running from helix alpha-11 to alpha-38. It consists of 31 helices of variable length connected by loops of variable size forming a compact unit; the helical packing pattern of the compact unit consists of five structural repeats that resemble tandem Armadillo (ARM) repeats. This domain is involved in ubiquitination as it binds Cdc48p and escorts ubiquitinated proteins from Cdc48p to the proteasome for degradation. The core is structurally similar to the nuclear transporter protein importin-alpha. The core is associated with the U-box at the C terminus, (IPR003613 from INTERPRO), which has ligase activity. Ubiquitin conjugation factor E4 is involved in N-terminal ubiquitin fusion degradation proteolytic pathway (UFD pathway). E4 binds to the ubiquitin moieties of preformed conjugates and catalyses ubiquitin chain assembly in conjunction with E1, E2, and E3. E4 appears to influence the formation and topology of the multi-Ub chain as it enhances ubiquitination at 'Lys-48' but not at 'Lys-29' of the N-terminal Ub moiety.; GO: 0034450 ubiquitin-ubiquitin ligase activity, 0006511 ubiquitin-dependent protein catabolic process, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 2KRE_A 3M63_A 2QIZ_A 2QJ0_A 3M62_A.
Probab=100.00 E-value=3.7e-58 Score=566.35 Aligned_cols=403 Identities=20% Similarity=0.263 Sum_probs=313.8
Q ss_pred hhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000809 749 LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRERACSEQLKRLKEARNNYREEVIDCVRHCAWYR 828 (1273)
Q Consensus 749 ~~~~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~~~~~~~~~~l~~~~~~~~e~l~~~~r~~~w~~ 828 (1273)
.=++|+|...+..-|+|+++.+.+...+..++.+..+.+++++.+ +..+..++++..+.+...-++
T Consensus 172 nFiTe~FFLT~~a~hlg~~~~~~~~~~~~r~l~~lq~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~e 237 (629)
T PF10408_consen 172 NFITECFFLTLRALHLGLLPAIQRYKRLLRELRRLQRELEELEAS--------------AQLKRLKEQLDKLMSEKLSLE 237 (629)
T ss_dssp -HHHHHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHHHHHHHTT---------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 457799999999999999998877755555555555444444322 345556667777777777799
Q ss_pred hhhcchhHHHHHHH----HHHHHHHhhcc--------------cCCCCCcccccchHHHHHHHHHHHHhhcc--CCCCCC
Q 000809 829 ISLFSRWKQRGMYA----TCVWVVQLLLV--------------LSKVDSVFIYIPEFYLEALVDCFHVLRKS--DPPFVP 888 (1273)
Q Consensus 829 ~~l~~~~~q~~~~~----~~~WLlrl~~~--------------~s~~~~~F~~lPEfylE~ivd~f~~l~r~--~p~~v~ 888 (1273)
++++++..+...+. ++.||+|++++ +++.|+.|+++||||||||+|++.|++|+ .|
T Consensus 238 ~~L~~p~~~~~~~~F~~~~~~wL~~~~~~~~~~~~~~~~~~Plp~~~p~~f~~lPE~~iedi~d~~~f~~~~~~~~---- 313 (629)
T PF10408_consen 238 AVLLDPDFLSRCLQFYNFVAQWLLRLADPSNQYPENKPPKLPLPEEPPPQFAYLPEFFIEDIVDFLLFLRRFNNSP---- 313 (629)
T ss_dssp HHHT-HHHHHHHHHHHHHHHHHHHHHHSTT--TTS-S---S-SS----TTGGGSBTHHHHHHHHHHHHHTTSTT-T----
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhcccccccccCCcCCCCCCCCChHHHhCCHHHHHHHHHHHHHHHHhcCCh----
Confidence 99999996654443 99999999942 12348999999999999999999999999 54
Q ss_pred chhhhhhhHHHHHHHHHhhcCCC-CccChhhHHHHHHHHHhhhcchh------HHHHHhcCHHHHHhhHHHHHhhcccc-
Q 000809 889 STIFIKQGLASFVTFVVTHFNDP-RISSADLRDLLLQSISVLVQYKD------YLAAFESNEAATLRLPKALISAFDNR- 960 (1273)
Q Consensus 889 ~~~~~~~~l~~~v~Fl~~~l~~~-rIvNP~LKa~Lvq~L~~l~~~~~------~~~~~e~~~~a~~~Lv~aLL~~Y~~R- 960 (1273)
..+....++.+++|+++++++| +|.|||||+||||+|..+++... ..++|++||.+++||++|||+||++.
T Consensus 314 -~~l~~~~~~~l~~f~i~fm~s~~~ikNP~LraklvevL~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~sLm~~yidvE 392 (629)
T PF10408_consen 314 -DLLSSQDLDELVTFCITFMGSPEYIKNPHLRAKLVEVLFSLLPPDRDGRRGVLGSLFESHPLAQEHLVPSLMKFYIDVE 392 (629)
T ss_dssp -TTT-T-THHHHHHHHHHHHH-TTS---HHHHHHHHHHHHHCCS--TTS---TTHHHHHH-HHHHCCHHHHHHHHHHHCC
T ss_pred -hhhhhhhHHHHHHHHHHHhCChhhcCCHHHHHHHHHHHHHhcCcccccccccHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 3344557788888888888889 77799999999999998775422 25699999999999999999999987
Q ss_pred ccchhhHHHHHhhcCCCCcccccC----CCCCCcHHHHHHHHHHHhhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHh
Q 000809 961 SWIPVTNILLRLCKGHGFGSSKHG----ESSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEK 1036 (1273)
Q Consensus 961 ~wi~~~~IL~r~w~g~gF~~rk~~----~~~~~s~~~q~~l~e~~~~n~~~FvrFlN~LlNdl~~lldEfl~~L~eIq~~ 1036 (1273)
.+|+.++ |+ +||++|... ...|.++.||+.+.+.++.|+++|+||+|+||||+||+|||++..|++||+.
T Consensus 393 ~Tg~~~q----fy--dKFn~R~~i~~il~~lw~~~~~r~~~~~~~~~~~~~F~rFvn~liND~~~llDE~l~~L~~I~~~ 466 (629)
T PF10408_consen 393 KTGASTQ----FY--DKFNIRYHISQILKYLWKNPEYREQFIKEAKENPPLFVRFVNMLINDTTFLLDESLSKLKEIKEL 466 (629)
T ss_dssp CT-SSSS----ST--CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCcc----ch--hcccchhhHHHHHHHHcCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888866 44 788888333 2457899999999999999999999999999999999999999999999996
Q ss_pred hh------------hhHH---------hhhhchhhhhchHHHHHHHHHHhhhcccCcCCChhhHHHHHHHHHHHHHHhhc
Q 000809 1037 YQ------------VSEF---------QQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVT 1095 (1273)
Q Consensus 1037 ~~------------~~e~---------qqr~c~s~f~Ls~~tlr~Le~~T~~~p~~F~~~~~~iv~RLa~MLny~L~~l~ 1095 (1273)
|. .+|+ .+|+|++|+.|+++|++||++||+++|++|++|+ ||+|||+||||||.+++
T Consensus 467 q~~~~d~~~w~~~~~~~r~~~~~~l~~~e~~~rs~~~l~~~t~~~l~~lt~~~~~~Fl~~e--lv~RlA~MLn~~L~~L~ 544 (629)
T PF10408_consen 467 QEEMADQSEWNALSQEERQEKESQLEQAERQARSYLQLANETLKMLNYLTSEIPEPFLRPE--LVDRLAAMLNYNLDQLV 544 (629)
T ss_dssp HHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-GGGGCSHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHH--HHHHHHHHHHHHHHHHc
Confidence 42 1111 2567999999999999999999999999999966 99999999999999999
Q ss_pred CCcccccchhcccccCCCccCC--CchhhhhHHHHHHHhccccccccccCcccceeeeeeccCCCchhhhhHHHHhhhcc
Q 000809 1096 SAADAEFFDLSLRRHGQSLEKV--NRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNW 1173 (1273)
Q Consensus 1096 ~~p~~~~~~~~lk~~~~~~ek~--~p~~lL~~i~gIyLNL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~ 1173 (1273)
| |+ |.++||+ |||+| +|+.+|..|++||+||+..++| ++||| .|+|||..+.|+++.++..
T Consensus 545 G-pk--~~~LkVk----~~~~y~F~P~~ll~~i~~iy~~l~~~~~F---------~~ava-~D~Rsy~~~lf~~a~~~l~ 607 (629)
T PF10408_consen 545 G-PK--CSELKVK----NPEKYGFDPKELLSQIVDIYLNLSDSDKF---------VQAVA-NDGRSYSPELFEKAVRILR 607 (629)
T ss_dssp S-HH--HHT---S----SGGGGT--HHHHHHHHHHHHHHCTT-HHH---------HHHHH-H-TTT--HHHHHHHHHHHT
T ss_pred C-Cc--hhcccCC----ChhhcCCcHHHHHHHHHHHHhhcCCchHH---------HHHHH-hCCCCCCHHHHHHHHHHHH
Confidence 5 54 4556777 56665 9999999999999999999999 79999 5999999999999999986
Q ss_pred cCcccCCCCHHHHHHHHHHHHHHHH
Q 000809 1174 AGSFRGDTYLSKLGQLECFLSLVLC 1198 (1273)
Q Consensus 1174 ~~~~~~~~~~~~i~~l~~f~~~l~~ 1198 (1273)
+. +.++.++++++++|++++++
T Consensus 608 ~~---~l~~~~~i~~f~~l~~~ve~ 629 (629)
T PF10408_consen 608 RI---GLKSEDEIEKFEELAKKVEE 629 (629)
T ss_dssp TS---TSSTHHHHHHHHHHCCHHHH
T ss_pred Hh---CCCCHHHHHHHHHHHHHHhC
Confidence 44 66789999999999998874
No 4
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-55 Score=535.06 Aligned_cols=471 Identities=17% Similarity=0.159 Sum_probs=378.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH----hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000809 752 EELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE----RACSEQLKRLKEARNNYREEVIDCVRHCAWY 827 (1273)
Q Consensus 752 ~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~----~~~~~~~~~l~~~~~~~~e~l~~~~r~~~w~ 827 (1273)
++-++-.+..-|+|+.+...... ++++.+.+.++.|+. +.+-+...+..+..+...+.+....++..|+
T Consensus 400 t~cfFltl~~~~l~~~~~~~~~~-------~i~~~i~~l~~~i~~lk~~~d~~~~a~~~~~~l~r~e~~lk~~~~~k~~~ 472 (943)
T KOG2042|consen 400 TECFFLTLAALHLGLLPTCSAFS-------EINRSLPELKPLIETLKVIADGYSVANLESADLTRLEKGLKLLSSIKPCL 472 (943)
T ss_pred hHHHHHHHHHHHhchhHHHHHHH-------HHHHHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHhhhhhh
Confidence 47788888889999988876664 344444444444422 2222233333366677777888888999999
Q ss_pred HhhhcchhHHH---HHHH-HHHHHHHhhc-------cc-CCCCCcccccchHHHHHHHHHHHHhhccCCCCCCchhhhhh
Q 000809 828 RISLFSRWKQR---GMYA-TCVWVVQLLL-------VL-SKVDSVFIYIPEFYLEALVDCFHVLRKSDPPFVPSTIFIKQ 895 (1273)
Q Consensus 828 ~~~l~~~~~q~---~~~~-~~~WLlrl~~-------~~-s~~~~~F~~lPEfylE~ivd~f~~l~r~~p~~v~~~~~~~~ 895 (1273)
+++++.+..+. .++. ++.|++|+++ .+ ...|..|+++||||+||+.+|..|++++-+ ..+..+
T Consensus 473 ~~~~~~p~l~~~~~~f~~~~s~~l~~~~~~~~~~~~~~p~~~p~~f~~lPE~~vedi~efllf~~~~~~-----~~l~~~ 547 (943)
T KOG2042|consen 473 EITLLFPSLLQRCLNFYDFMSEGLLRVVDLEMPDSSTLPLNAPCRFSALPEFFVEDIEEFLLFARKLGK-----MALDLQ 547 (943)
T ss_pred hhhhcCcHHHHHhhccHHHHHHHHHHHhhccCCcccCCCCCCccccccCchhhcCCHHHHHHHHHHhch-----hhhccc
Confidence 99999988433 3333 7999999988 22 236789999999999999999999998762 334566
Q ss_pred hHHHHHHHHHhhcCCCCcc-ChhhHHHHHHHHHhhh--cchh-HHHHHhcCHHHHHhhHHHHHhhcccc-ccchhhHHHH
Q 000809 896 GLASFVTFVVTHFNDPRIS-SADLRDLLLQSISVLV--QYKD-YLAAFESNEAATLRLPKALISAFDNR-SWIPVTNILL 970 (1273)
Q Consensus 896 ~l~~~v~Fl~~~l~~~rIv-NP~LKa~Lvq~L~~l~--~~~~-~~~~~e~~~~a~~~Lv~aLL~~Y~~R-~wi~~~~IL~ 970 (1273)
.+..+++|+..++++++++ |||+|+||||+++.-. ..+. ....++.++.+. |+++||+||++. +++++++..
T Consensus 548 ~~~~~~~f~~~~~~~~~~ikNP~l~aKlvevl~~~~~~~s~~~v~~v~~~~~~~~--L~~~llr~yv~ie~tg~s~qfy- 624 (943)
T KOG2042|consen 548 RLADIVTFLTVFMTSSMYIKNPYLRAKLVEVLSMPKPSLSFNAVSRVIEAHENGG--LVPCLLRFYVDIESTGQSSQFY- 624 (943)
T ss_pred cchhHHHHHHHhcccHhhhcChHHHHHHHHHHhccCcccCchHHHHHHHhccccc--cchhhhhheeeeecCCCchhHH-
Confidence 7889999999999999555 9999999999998322 1133 345565555444 999999999987 888987753
Q ss_pred HhhcCCCCcccccCC----CCCCcHHHHHHHHHHHhhCCCchHHHHHHHhhhhHHHHHHHHHHHHHHHHhhh--------
Q 000809 971 RLCKGHGFGSSKHGE----SSSSSVIFQRLLREACINDEGLFSTFLNRLFNTLSWTMTEFSISIREMQEKYQ-------- 1038 (1273)
Q Consensus 971 r~w~g~gF~~rk~~~----~~~~s~~~q~~l~e~~~~n~~~FvrFlN~LlNdl~~lldEfl~~L~eIq~~~~-------- 1038 (1273)
++|++|.+.. ..|..|.|++...+..+.++++|+||+|+|+||++|+|||++..|.+||+.|+
T Consensus 625 -----dKfnvr~~i~~i~~~mw~~pa~~~~~~~~~~~~~~~f~rfvn~l~Nd~t~lLDE~l~~L~~i~~iq~~~kn~~q~ 699 (943)
T KOG2042|consen 625 -----DKFNVRRNISEILEYMWQDPAYRGEFMDEAKDAPPVFVRFVNMLLNDATFLLDESLSELMEIHQIQPSGKNIDQW 699 (943)
T ss_pred -----HHhHHHhhHHHHHHHHhcCccccchhhhhccccchHHHHHHHHHhhhHHHHHhHHHHHhhhhhhhhhhhhhhhhc
Confidence 8899995543 34677889999999998889999999999999999999999999999998542
Q ss_pred ----hhHH---------hhhhchhhhhchHHHHHHHHHHhhhcccCcCCChhhHHHHHHHHHHHHHHhhcCCcccccchh
Q 000809 1039 ----VSEF---------QQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSGTDTNLRRLTELIVFILNHVTSAADAEFFDL 1105 (1273)
Q Consensus 1039 ----~~e~---------qqr~c~s~f~Ls~~tlr~Le~~T~~~p~~F~~~~~~iv~RLa~MLny~L~~l~~~p~~~~~~~ 1105 (1273)
.+|+ +.|+|++++.++++|+.||+++|+++|++|++++ +++|+|+||||||.+++|| | |.++
T Consensus 700 ~~~~~~~~e~~~~~l~s~~r~art~~~la~et~~ll~~~tk~i~~~Fl~~e--lv~rla~MLN~nL~~lvGP-K--~~~L 774 (943)
T KOG2042|consen 700 TKLKREEREAKWGRLASDERQARTGLALANETIDLLHLLTKAIPEPFLLPE--LVERLAAMLNYNLSQLVGP-K--CSDL 774 (943)
T ss_pred cCCcHHHHHHHHhccccchhhhcccceeccchhhHHHHHHhhcchhhcchh--HHHHHHHHHhhhHHHhhCC-c--cccc
Confidence 1111 2467999999999999999999999999999987 9999999999999999965 4 4556
Q ss_pred cccccCCCccCCCchhhhhHHHHHHHhccccccccccCcccceeeeeeccCCCchhhhhHHHHhhhcccCcccCCCCHHH
Q 000809 1106 SLRRHGQSLEKVNRGMILAPLVGIILNLLDASAESECGVQNDVVGVFSSMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSK 1185 (1273)
Q Consensus 1106 ~lk~~~~~~ek~~p~~lL~~i~gIyLNL~~~~~f~~~~~~~~~~~avas~D~~sf~~~~f~~l~~i~~~~~~~~~~~~~~ 1185 (1273)
|+|.| ..+.|+|+++|++|+.||+||.+.+.| +.|+|+ |+|||+.+.|..+..+... ++.++..+
T Consensus 775 kvkdp--~~y~fePk~ll~~i~~iYlnl~~~~~F---------~~avA~-D~RSys~~lF~~a~~~~~k---~~l~~~~~ 839 (943)
T KOG2042|consen 775 KVKDP--EKYGFEPKQLLSQLSDIYLNLSSEPSF---------VEAVAK-DGRSYSEELFNHAISILRK---RILKSSRQ 839 (943)
T ss_pred ccCCc--cccCCChHHHHHHHHHHHHhhccchhH---------HHHHhc-cccccCHHHHhhhHHHHHH---hhcccHHH
Confidence 77733 233359999999999999999999999 789995 9999999999999998832 24567789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEec-CCCccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1186 LGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1186 i~~l~~f~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lP-CgH~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
|+.+..|.+++++...++.+++. ++++.||++.+||+++.|+|||.+| .|++.|++.|.+|++++.++||||+|++.
T Consensus 840 Ie~~s~la~~~~~~~~~~~~eee--~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs~~tdPFNR~pLt~ 917 (943)
T KOG2042|consen 840 IEEFSELAERVEATASIDAEEEE--ELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLSDCTDPFNREPLTE 917 (943)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhcCCCCccccccCch
Confidence 99999999999987766555443 4688999999999999999999999 88889999999999999999999999764
No 5
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.96 E-value=4.6e-30 Score=288.93 Aligned_cols=222 Identities=27% Similarity=0.502 Sum_probs=190.1
Q ss_pred HhhhHhhhCCCCCCCCCCCCccch--------hhHHHHHHhhhccccCCCccccccCCCcccccCCCCCceEEeCcccCC
Q 000809 46 EQTLEYIFGLPNKSLGPLTCPVDN--------NLIRSIIKNDFSKCYLNSDAVVANRDGIGILENGSGPHIVGLEESSIC 117 (1273)
Q Consensus 46 e~~l~~iF~~~~~~~~~~~g~~~~--------~~v~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~gp~~V~LD~~~~~ 117 (1273)
.++|+.|+|..+..+++.+|++.+ |+||+.|++ ++.-.-+ .-|.. .-.|...++++.+..
T Consensus 30 aeaiplilgggdvlmaaetgsgktgaf~lpilqiv~etlrd-~~egk~g-------k~~~~----~ga~~~w~mn~~Drg 97 (725)
T KOG0349|consen 30 AEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWETLRD-LEEGKAG-------KGGMA----DGAPREWKMNKQDRG 97 (725)
T ss_pred cccccEEecCCcEEEEeccCCCCccceehhhHHHHHHHHHh-HhhcccC-------CCccc----CCCccccccCccccC
Confidence 578999999999999999999998 899999988 2211111 11111 122455788999988
Q ss_pred CCeEEeCCCcEEEee--CceeeEEeCceee-cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCccCCCCceeEecCCccc
Q 000809 118 GDVRIAKLPLLVESL--AMFSSARANVCVW-KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKK 194 (1273)
Q Consensus 118 ~~l~LS~d~L~v~~~--s~~~sVRAn~~V~-sGk~YFEV~I~s~G~irIG~at~~~~l~~~~~vG~d~~Sygy~g~~g~~ 194 (1273)
..+-|..|+|..++. +.|.++|||.|+. .|||||||++.+.|.+||||+|..++++ +|.+..++||.|.+.+.
T Consensus 98 ~alaI~~dGL~CqSre~KeWhGcRaT~Gl~gkGK~YyEvtitd~GLCRVGWsT~qasLd----lGt~~~gFGfGGTGkKS 173 (725)
T KOG0349|consen 98 LALAIDEDGLACQSREKKEWHGCRATAGLYGKGKYYYEVTITDKGLCRVGWSTLQASLD----LGTGLDGFGFGGTGKKS 173 (725)
T ss_pred ceeeEcCCccccchhHHhhhhccccccccccCceEEEEEEeccCceeeechhhcccccc----cCccccccccCccCccc
Confidence 888999999999886 5999999999997 8999999999999999999999999986 89999999999999887
Q ss_pred ccCCCccCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCC-
Q 000809 195 WNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPI- 273 (1273)
Q Consensus 195 ~h~~~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~~PFkYpp- 273 (1273)
.|.....||.+|+-.|||||.+|+++++|+|+|||+.+|.||+.... ..+..+||||-+. +..+.+|||..||||||
T Consensus 174 ~nkqFDdYGe~Ft~~DvIGCyLDld~~~v~fsKNG~~lg~AF~ip~~-~kn~~lfPAvvlk-Nael~fNFG~~~FKfpPg 251 (725)
T KOG0349|consen 174 TNKQFDDYGEPFTLNDVIGCYLDLDSRTVWFSKNGEQLGAAFSIPVK-YKNSNLFPAVVLK-NAELSFNFGSQPFKFPPG 251 (725)
T ss_pred cccccccccCcccccceeeEEEeccCceEEEecCccccceeEEcChh-hcccccchheeec-cceEEEecCCCccccCCC
Confidence 77778999999999999999999999999999999999999997653 4567899999775 46899999999999988
Q ss_pred CCcccC-CCCCCc
Q 000809 274 NCYLPL-QESPPV 285 (1273)
Q Consensus 274 ~Gf~pl-~~pp~~ 285 (1273)
+||..+ ++|+..
T Consensus 252 ngFva~s~Ap~e~ 264 (725)
T KOG0349|consen 252 NGFVAVSDAPNEH 264 (725)
T ss_pred CceEEeecCCccc
Confidence 689998 566653
No 6
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=2.3e-27 Score=275.01 Aligned_cols=194 Identities=27% Similarity=0.451 Sum_probs=172.1
Q ss_pred CCCceEEeCcccCCCCeEEeCCCcEEEeeCceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCccC
Q 000809 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGD 180 (1273)
Q Consensus 104 ~gp~~V~LD~~~~~~~l~LS~d~L~v~~~s~~~sVRAn~~V~sGk~YFEV~I~s~---G~irIG~at~~~~l~~~~~vG~ 180 (1273)
..+.+|.+...+.+..++|++|.|++++..+|+.|||+++|.+|.|||||+|+.. +++|+||++..+++. .+||+
T Consensus 288 ~~~~tv~l~~hdrA~ql~Is~drlt~tgeKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~Lq--ApvGY 365 (544)
T KOG2626|consen 288 SPMDTVNLSWHDRAEQLKISEDRLTATGEKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQ--APVGY 365 (544)
T ss_pred CchhhhhhhhhcccccccccccceeeecccceeeeeecccccccceeEEEEeecCCCccceeeeccccccccc--ccccc
Confidence 3345899999999999999999999999999999999999999999999999864 589999999999885 48999
Q ss_pred CCCceeEecCCcccccCC-CccCCCCCCCCCEEEEEEeCCC---------------------------------------
Q 000809 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------------------------------------- 220 (1273)
Q Consensus 181 d~~Sygy~g~~g~~~h~~-~~~YG~~f~~GDVIGC~LDld~--------------------------------------- 220 (1273)
|..||+|++.+|+++|.. ++.|...|+.|||||+.|++..
T Consensus 366 dkfsY~wRdk~GtKfh~s~gk~Y~~gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l 445 (544)
T KOG2626|consen 366 DKFSYGWRDKKGTKFHESLGKHYSDGFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTL 445 (544)
T ss_pred ccccccccccCCcchhhhhhhhhhhhccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhcc
Confidence 999999999999999876 6789999999999999999862
Q ss_pred -----CeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEecCCCCCccCCC--CcccCCCCCCc-hHHHHHH
Q 000809 221 -----DEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPV-NVFATQL 292 (1273)
Q Consensus 221 -----g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~~PFkYpp~--Gf~pl~~pp~~-~~~a~~l 292 (1273)
..|.|+|||+.+|+||+||.. .+.||||||+++++.+++|||+. |+|||. |+++. ++. +++.++.
T Consensus 446 ~~~pgS~I~f~KNG~~qG~Ay~ni~~---~G~YyPaIS~yks~tv~~nfGP~-F~~~p~~lg~~~~---~m~~~~~eqi~ 518 (544)
T KOG2626|consen 446 KIKPGSEIEFFKNGVSQGVAYENIYK---AGAYYPAISIYKSCTVKFNFGPQ-FRYPPCVLGNRAV---GMSDRYKEQIA 518 (544)
T ss_pred ccCCCceEEEeecccchhhhhhhhhc---cccccceeeecccceEEEecccc-ccCCccccCCCcc---cccchhhhhHH
Confidence 689999999999999999862 36899999999999999999996 999884 56654 333 5688999
Q ss_pred HHHHHHhhcccccc
Q 000809 293 LQCLSRLLGMDKAE 306 (1273)
Q Consensus 293 ~~~~~~l~~~~~~~ 306 (1273)
+++++++|++.+.|
T Consensus 519 E~~l~DiLy~ve~e 532 (544)
T KOG2626|consen 519 EDTLADILYEVEQE 532 (544)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987443
No 7
>smart00449 SPRY Domain in SPla and the RYanodine Receptor. Domain of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin homologues.
Probab=99.85 E-value=1e-20 Score=185.91 Aligned_cols=118 Identities=38% Similarity=0.650 Sum_probs=104.8
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCCCCCCCCCccCCCCceeEecCCcccccCCC-ccCCCCCCC-CCEEEEEEeCCCCeE
Q 000809 146 KGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEA-EPYGQSWVA-GDIIGCCIDLDSDEI 223 (1273)
Q Consensus 146 sGk~YFEV~I~s~G~irIG~at~~~~l~~~~~vG~d~~Sygy~g~~g~~~h~~~-~~YG~~f~~-GDVIGC~LDld~g~I 223 (1273)
+|+|||||+|...+.++|||++...+.+....+|++.+||+|+++++..|++.. ..|+.++.. ||+|||+||+++|+|
T Consensus 1 sG~~YwEV~v~~~~~~~vGv~~~~~~r~~~~~~G~~~~sw~~~~~~g~~~~~~~~~~~~~~~~~~gd~iGv~lD~~~g~l 80 (122)
T smart00449 1 SGRHYFEVEIFDGGHWRVGVATKSVPRGYFALLGEDKGSWGYDGDGGKKYHNSTGPEYGLPLQEPGDVIGCFLDLEAGTI 80 (122)
T ss_pred CCcEEEEEEEcCCCeEEEEEEcCccCCCccccCCCCCCEEEEEcCCCcEEeCCCCCccCccccCCCCEEEEEEECCCCEE
Confidence 599999999999999999999999875444579999999999999988887654 578889987 999999999999999
Q ss_pred EEEECCeee-ecccccccccCCCCcEEEEEEeCCCCEEEEecCC
Q 000809 224 SFYRNGVSL-GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGA 266 (1273)
Q Consensus 224 ~FtkNG~~L-G~AF~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~ 266 (1273)
+||+||+.+ +.+|..+. ..+++||+|++..+..+++|||+
T Consensus 81 ~F~~ng~~~~~~~f~~~~---~~~~l~P~~~~~~~~~~~~n~g~ 121 (122)
T smart00449 81 SFYKNGKYLHGLAFFDVK---FSGPLYPAVSLGSGCSVRLNFGP 121 (122)
T ss_pred EEEECCCEeeeEEEeccC---CCCcEeeEEEcCCCCEEEEEecC
Confidence 999999999 79998764 34699999999988899999996
No 8
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function. Distant homologues are domains in butyrophilin/marenostrin/pyrin []. Ca2+-release from the sarcoplasmic or endoplasmic reticulum, the intracellular Ca2+ store, is mediated by the ryanodine receptor (RyR) and/or the inositol trisphosphate receptor (IP3R).; GO: 0005515 protein binding; PDB: 2V24_A 3EK9_A 2AFJ_A 2IWG_E 3EMW_A 2WL1_A 3TOJ_B 2VOK_A 2VOL_B 2FNJ_A ....
Probab=99.84 E-value=1.1e-20 Score=185.15 Aligned_cols=120 Identities=42% Similarity=0.663 Sum_probs=102.6
Q ss_pred cCEEEEEEEEEecCeEEEEEecCCC-CCCCCCCccCCCCceeEecCCcccccCC-CccCCCCCCC-CCEEEEEEeCCCCe
Q 000809 146 KGKWMYEVTLETSGVQQLGWATLSC-PFTDHKGVGDADDSYAFDGRRVKKWNKE-AEPYGQSWVA-GDIIGCCIDLDSDE 222 (1273)
Q Consensus 146 sGk~YFEV~I~s~G~irIG~at~~~-~l~~~~~vG~d~~Sygy~g~~g~~~h~~-~~~YG~~f~~-GDVIGC~LDld~g~ 222 (1273)
+|+|||||+|.+.+.+.|||++... .......+|++..||+|++.++..|++. ...++.++.. ||||||++|+++|+
T Consensus 1 sG~~YwEV~v~~~~~~~iGv~~~~~~~~~~~~~~g~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~dvIG~~lD~~~g~ 80 (124)
T PF00622_consen 1 SGKHYWEVEVDSGGSISIGVATSSASVSGDENLSGYDPFSWGFHGDGGKKYHGGTSEETGSPFQEPGDVIGCGLDLDNGE 80 (124)
T ss_dssp SSEEEEEEEETGGCTEEEEEEETTSEESSSTS-TTSSTTEEEEETTTTTEEESTSSSECSCTSSTTTSEEEEEEETTTTE
T ss_pred CcCEEEEEEEecCcCEEEEEeECccccCCccccCCccccceeeeccccccceeecccccccccccCCcEEEEEEeecccE
Confidence 6999999999998889999999998 1122346899999999999997777665 4678899998 99999999999999
Q ss_pred EEEEECCeeee-cccccccccCCCCcEEEEEEeCCCCEEEEecCCCC
Q 000809 223 ISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGARP 268 (1273)
Q Consensus 223 I~FtkNG~~LG-~AF~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~~P 268 (1273)
|+||+||+.++ .+|+++. ...++||+|++..++++++|||++|
T Consensus 81 l~F~~ng~~~~~~~f~~~~---~~~~l~P~v~~~~~~~~~~n~g~~~ 124 (124)
T PF00622_consen 81 LSFYKNGKFLGIYAFTDID---FSEPLYPAVSLGGGQSVELNFGQRP 124 (124)
T ss_dssp EEEEETTEEEEEEEEESCT---TSSSBEEEEEEESTSEEEEEEEC--
T ss_pred EEEEECCccceeEEEECCC---CCCcEEEEEEecCCCEEEEEeCCCC
Confidence 99999999999 8898664 2369999999988999999999986
No 9
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown]
Probab=99.68 E-value=8e-16 Score=154.64 Aligned_cols=160 Identities=24% Similarity=0.317 Sum_probs=135.9
Q ss_pred ceEEeCcccCCCCeEEeCCCcEEEeeCceeeEEeCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCccCCCCcee
Q 000809 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYA 186 (1273)
Q Consensus 107 ~~V~LD~~~~~~~l~LS~d~L~v~~~s~~~sVRAn~~V~sGk~YFEV~I~s~G~irIG~at~~~~l~~~~~vG~d~~Syg 186 (1273)
+.|.||.....+++.|-+.++.+.|. +++.|+.++...|-||||+|.+.|.|.||++++..++++. +.|.|..||+
T Consensus 27 P~V~LD~~hMG~dVvilk~g~RicGt---GG~lAtaPlvQnKsYFevkiQ~tG~WgiGlat~q~~l~~~-p~g~d~~sw~ 102 (197)
T KOG4030|consen 27 PTVRLDVGHMGKDVVILKEGERICGT---GGALATAPLVQNKSYFEVKIQQTGTWGIGLATKQSPLDKV-PGGCDEKSWG 102 (197)
T ss_pred CcEEeehhccCCcEEEEecCcEEecc---CceeeeeeeecccceEEEEEeecceeeeeeeeccCccccC-CCCCcceeEE
Confidence 78999999999999999999999866 7889999999999999999999999999999999999864 6788999999
Q ss_pred EecCCcccccCCCc---cCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEEEe
Q 000809 187 FDGRRVKKWNKEAE---PYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCVLN 263 (1273)
Q Consensus 187 y~g~~g~~~h~~~~---~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaVSl~~g~~v~vN 263 (1273)
.++++...+|+... +-..--..|||||+.+| .-++-||.||+.+...|+++. +++||.|-+.+++.+.+-
T Consensus 103 ~r~dga~~hnnee~~r~pa~~~p~EGDvVGvayD--HVELnfY~NGKn~e~p~~gvR-----G~vyPvvYVddsAILD~~ 175 (197)
T KOG4030|consen 103 IRDDGAIAHNNEEVARMPATVFPEEGDVVGVAYD--HVELNFYVNGKNVEDPITGVR-----GPVYPVVYVDDSAILDLK 175 (197)
T ss_pred EccCCchhcccHHHhcCccccCCccCcEEEEEee--eEEEEEEEcCceecccccccc-----cceeeEEEeCCceEEEEE
Confidence 99887644444321 11112268999999998 678999999999999999886 699999999999888888
Q ss_pred cCCCCCcc-CCCCcccC
Q 000809 264 FGARPFKY-PINCYLPL 279 (1273)
Q Consensus 264 FG~~PFkY-pp~Gf~pl 279 (1273)
|- .|.. ||+||..+
T Consensus 176 f~--nF~h~PPpGFe~I 190 (197)
T KOG4030|consen 176 FK--NFTHAPPPGFEEI 190 (197)
T ss_pred ec--ccccCCCCChhhe
Confidence 84 4777 88999765
No 10
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.65 E-value=2.9e-16 Score=188.93 Aligned_cols=158 Identities=32% Similarity=0.617 Sum_probs=132.5
Q ss_pred eCceeecCEEEEEEEEEecCeEEEEEecCCCCCCCCCCccCCCCceeEecCCcccccCCCccCCCCCCCCCEEEEEEeCC
Q 000809 140 ANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLD 219 (1273)
Q Consensus 140 An~~V~sGk~YFEV~I~s~G~irIG~at~~~~l~~~~~vG~d~~Sygy~g~~g~~~h~~~~~YG~~f~~GDVIGC~LDld 219 (1273)
-+++|..|+||||++..+.|.|||||++..|..+.. +|.|...++|+|.+++.||.+...||.+|.+||||||.+|++
T Consensus 1099 ksyavkagkwyfefe~vt~gdmrvgwarpgc~pd~e--lgadd~af~fdg~k~qrwhqg~~~~grswq~gdvvgcmi~l~ 1176 (5019)
T KOG2243|consen 1099 KSYAVKAGKWYFEFETVTAGDMRVGWARPGCQPDQE--LGADDQAFAFDGFKAQRWHQGNEHFGRSWQAGDVVGCMIDLD 1176 (5019)
T ss_pred hhheeeccceEEEEEEeeccceeecccCCCCCcchh--hCCccceeeeccchhhhhhccccccccccCCCCeEEEEEecc
Confidence 467889999999999999999999999999987754 899999999999999999999999999999999999999999
Q ss_pred CCeEEEEECCeee------ecccccccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccC-----CCCcccCC---CCC
Q 000809 220 SDEISFYRNGVSL------GVAFSGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYP-----INCYLPLQ---ESP 283 (1273)
Q Consensus 220 ~g~I~FtkNG~~L------G~AF~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~~--PFkYp-----p~Gf~pl~---~pp 283 (1273)
..++.||.||+.+ ..||.+. ..+.++.|..+++-.+.-++|||.+ .|+|- .+||.|+. +.-
T Consensus 1177 d~sm~ftlngeili~~~gselaf~d~---di~~gfipic~lg~aqigrmn~g~d~st~k~~ticglqeg~epfavn~nrd 1253 (5019)
T KOG2243|consen 1177 DASMIFTLNGEILIDDKGSELAFADF---DIEDGFIPICCLGLAQIGRMNFGKDASTFKFFTICGLQEGFEPFAVNMNRD 1253 (5019)
T ss_pred cceEEEEEcCeEEEcCCCCeeeeccc---cccCCceeeeehhhHhhcccccCCcccceeeeeeecccccCccceecccch
Confidence 9999999999988 2577764 3567899999988667778999986 58883 48999983 333
Q ss_pred CchHHHHHHHHHHHHhhcc
Q 000809 284 PVNVFATQLLQCLSRLLGM 302 (1273)
Q Consensus 284 ~~~~~a~~l~~~~~~l~~~ 302 (1273)
...++++++-+.++--.++
T Consensus 1254 i~mw~skrlp~f~~vp~~h 1272 (5019)
T KOG2243|consen 1254 IAMWFSKRLPQFLNVPKDH 1272 (5019)
T ss_pred HHHHHHhhchhhhcCCCCC
Confidence 3355667777666544443
No 11
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=99.56 E-value=3.1e-16 Score=190.04 Aligned_cols=545 Identities=18% Similarity=0.114 Sum_probs=364.7
Q ss_pred CCceeEecCCcccccCCCccCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeCCCCEEE
Q 000809 182 DDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQGERCV 261 (1273)
Q Consensus 182 ~~Sygy~g~~g~~~h~~~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaVSl~~g~~v~ 261 (1273)
..+|++++....+|+....+||..|.. |+|+|+++..--.+ ++.|+...+.+|+......++...+|++++..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~c~~~-~~~~~~~~~~~~~~e~~~~~~~~~r~a~~~~~~~~~~ 85 (558)
T KOG2242|consen 8 GFSYFEDGEDRRAWSPQPPAEEDEWHF-DTIVCIDTYNCDLH-KYRRDRSSGYALTKERFAGPWDGARAAYSVSRGEVCF 85 (558)
T ss_pred ccccccccchhhhccCCCCcccccccc-ceeeechhhhhhhh-hcccccccccccchhhccccCcccceeeeecCCcchh
Confidence 788999999999999999999999999 99999999988888 9999999999998766557788999999999999999
Q ss_pred EecCCCCCccCCCCcccCCCCCCchHHHHHHHHHHHHhhccccccchh-hhhhhhhhcccccccchhhchHHHHHHHHHh
Q 000809 262 LNFGARPFKYPINCYLPLQESPPVNVFATQLLQCLSRLLGMDKAERSS-VEKSRRLKRFVSLEKIFNPVSHGICEEFFSL 340 (1273)
Q Consensus 262 vNFG~~PFkYpp~Gf~pl~~pp~~~~~a~~l~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 340 (1273)
.|+++.||.++ ++.+.+.-|......+.|+.+...+.+-...-+.. .++....-++..+.+.|.......|-.+.+.
T Consensus 86 ~~~~~e~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~ 163 (558)
T KOG2242|consen 86 EMRINEPEEVP--HFQPLEPDPHDVRIGWSLDSIRTLLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEI 163 (558)
T ss_pred hcccccccccC--CCCccccccccccccccchhhhhccccccccccccccccchhhHHHHHHHhhcccccccchhhcccc
Confidence 99999999998 89888777776556666777666666544111111 1111111111222333444444457778888
Q ss_pred hhhcccccchhhhhHHHHHHHHHhcCCCC-CCCchhHHHHHHHHHhhcchhHHHHHHHHHhhcccccccccccCCCCCCC
Q 000809 341 LEADARIIEYVGWGILLSFMMEVFGLQVP-HDYSSLDRVVDVFLQFQGSRSIFEHIIQALSCGCKTASMVLTECPYSGSY 419 (1273)
Q Consensus 341 l~~~~~~~~y~~~~~l~~fl~~~~~~~~p-~~~~~~~~~l~l~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 419 (1273)
++...+.-++...+..+.|+++....+.+ +..+.+.....++..|-+.+...+.+.+.... -+..|+- ||.+..+.
T Consensus 164 ~d~~~l~~~k~~~~~~~~~~l~~~~~~~~~~~p~vl~~~~~ve~~f~~~~ag~~~v~~~~~~-i~~~~~~--~~~~~~~~ 240 (558)
T KOG2242|consen 164 LDEVELSYEKNGQDLGESFLLSKEDLGGQALYPHVLRKNCAVEGNFGQKAAGYEPVKEEYTF-IQNYPLE--ERLRGPVG 240 (558)
T ss_pred cccCcchhhhccchhhhhhcchhhhccCcccCcccccCcceeccccccccccccccchhhhh-hhhcchh--hcccCCCC
Confidence 77777777888888999999998777665 34456777778888898888555555555444 3333444 68898899
Q ss_pred chhhhHHhhhccHHHHHHHhhhcchhhhhcccccccCCCcchhhhcCCCcccCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 000809 420 PYLALACHILRREELMVLWWNSLDFEFIFEGFLSRKNPNRQDLQCMIPSVWWPGSCEDISYESSMMLTTTALSEAVSKIE 499 (1273)
Q Consensus 420 ~~l~l~~~~~~~~~~~~~~~~~~~f~~~~~~fl~~k~p~~~~l~~l~p~vww~~~~~~~~~e~~~~~~~~~l~~~~~~ve 499 (1273)
+.....|+...+.-+...|+.+-.++...+++.-. -+..+....+|.+||.|..+....+.
T Consensus 241 p~~~~~c~~~~~~g~~~~g~~~~~le~~~q~~~~~--~~i~g~~~~~~~~~~~g~~~~~~~~~----------------- 301 (558)
T KOG2242|consen 241 PETKKECEVFMMRGLPGAGKTSWALEPAAQNPEKG--GNILGGNTIMPKMRVVGLEEQTNDAF----------------- 301 (558)
T ss_pred ccccccchhhhcccccccccchhhhhhhhhCcccc--CCccccccccCCcCcccchhhhhccc-----------------
Confidence 99999999999998999999988888888888553 68889999999999999765211111
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHhhcCCCCCCCCCCCCCCCchhHHHHHHHHHHhhcccccCCccccc
Q 000809 500 EKHRELCLLVIQFIPPISPPQFPGSVFRTFIQNILLKNRGADRSLPPPGVSSNSVLVSLYTVILHFLSEGFAIGDTCSWL 579 (1273)
Q Consensus 500 ~~q~~l~~~ll~~~~~~~~~~~~~~~fr~fl~~~~~~nrg~~~~~~pp~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~ 579 (1273)
.+-.++ ...+......+.+.|.++++..+.+++ ++.+.+...|..+++.|.....+..+.+.. +
T Consensus 302 -----s~~~~~-~~~~~~~~~~~~~i~~~~~r~~~~d~~----~~s~~~~~r~~~~~~~~~~~~p~~~~~~~d------~ 365 (558)
T KOG2242|consen 302 -----SRGYLI-QQAGQCLNKLPRDIFLRKKRNYILDQT----NLSSSAQRRKMGLFSQFSRKAPVVCPAFED------L 365 (558)
T ss_pred -----cccchh-hccccccccchhhhhhhhhhhhhhhcc----ccchhhceecccccccccccCCCcCCchhh------h
Confidence 011111 112222223345566666666666664 334455556778888888777777776555 7
Q ss_pred cccccCCCccccccCCCccccccccccccccccccccccccccccccccCCCCchhhhhhccccccccccchhhc-ccCC
Q 000809 580 KRSEKNGCNVGFLHRGGQQSFPIGLFLKNDLLRADISRLGGSFSHLLKSHPVDDQDAEVIRWEEGYMDDEETRVC-HLSE 658 (1273)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~p~~~f~~~~~~~~~~~RlGG~~shl~k~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~ 658 (1273)
++-++.-+.+.+++.+++..+++..++.++..--..++.|++..|..+.++...+..+..+|....++..++|-. +...
T Consensus 366 ~s~~~v~~~~~~~d~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 445 (558)
T KOG2242|consen 366 KSRTIVRTEVEGKDVGETAVLEMNANFTLPGVMDYMDETGDSELLKEEAYGIGDQYSEEARKALPPQKKPNDRRKSNINE 445 (558)
T ss_pred ccccceEeeeecccCCcceEEEEeeeeccCchhhhhhhccccccchhhcccccccHhHHhhhccCcccccccccccCcCc
Confidence 777777778888888888888887665555444445555555555555566656655555777777777655311 0000
Q ss_pred CCCcccCCcchhhhhcccccccccCCCCCCCccCCCcccccccccccCCCCCccccCCCCCCCCCCCCCCCCCccccchh
Q 000809 659 HKPCCCSSYDAEFVRSLKYPVRNATKGSRGHCSSVPERSAHVAAECSTGSLNDEIADKPSTSDQSESDFGYHPVRHTMTV 738 (1273)
Q Consensus 659 ~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (1273)
. .+.....--+..++.+.+..++.++. ..+.++....+-.....|+..++.+.+++..|...+..-
T Consensus 446 ~-------------~~~~~~~g~~~~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (558)
T KOG2242|consen 446 T-------------DTQQQRRGGTANGSQKRGGFNMSGGQ-LGAPGNRGGNNRRDDNEPSRWGSSDMSFQQCPPPFQAGP 511 (558)
T ss_pred c-------------cchhhhccccccCCccceeeecccCC-CCCCccccccccCCCCCCCccCCCCcccccCccccCCCC
Confidence 0 00000000111222333333333332 233333333333456778889999999999877644433
Q ss_pred ccccccchhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHH
Q 000809 739 LRESNMSAATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSI 784 (1273)
Q Consensus 739 ~~~~~~~~~~~~~~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~ 784 (1273)
. ++.+..-.+.....|+.-.++|+-+.++++..++.+.+..+.+
T Consensus 512 ~--~~~~~~~~~~~~~~~~~~~~n~~~~~~~f~~~~~~~~~~~~~~ 555 (558)
T KOG2242|consen 512 F--QPPPGLKVPPFSYSDALGPPNRIIYAPNFRRPSYERAHTTLSQ 555 (558)
T ss_pred C--CCCCcCCCCccccccccCcccchhcccccccCccccccccccc
Confidence 2 2224444556688888899999999999999887777766554
No 12
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only]
Probab=99.47 E-value=3.9e-13 Score=144.31 Aligned_cols=164 Identities=22% Similarity=0.267 Sum_probs=132.5
Q ss_pred EEeCcccCCCCeEEeCCC-cEEEeeC---ceeeEEeCceeecCEEEEEEEEEe--cC-eEEEEEecCCCCCCCC---CCc
Q 000809 109 VGLEESSICGDVRIAKLP-LLVESLA---MFSSARANVCVWKGKWMYEVTLET--SG-VQQLGWATLSCPFTDH---KGV 178 (1273)
Q Consensus 109 V~LD~~~~~~~l~LS~d~-L~v~~~s---~~~sVRAn~~V~sGk~YFEV~I~s--~G-~irIG~at~~~~l~~~---~~v 178 (1273)
-.|++.+++.++.+-.++ +++..+- .-.++|+..+.+.|.++|||.+.. .| +..||++|..+++... ..+
T Consensus 27 ~~w~~~drs~nv~vk~~~~~tfhrhpvaqstd~~rGk~g~~~g~h~w~i~w~~r~~GT~avVGIaTk~Aplha~gy~aLl 106 (242)
T KOG3953|consen 27 HGWSPSDRSLNVFVKLPDGLTFHRHPVAQSTDGIRGKRGYSRGRHAWEIAWPNRQRGTHAVVGIATKVAPLHAVGYTALL 106 (242)
T ss_pred hccCcccccceeEEecCCcceEEecCCccccccccceeeeccCceEEEEEecCCccCCcceEEEEcccCchhhhHHHHHh
Confidence 567777887777765544 7776542 356889999999999999999987 35 7899999999988642 368
Q ss_pred cCCCCceeEecCCcccccCCC--ccC-----CCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEE
Q 000809 179 GDADDSYAFDGRRVKKWNKEA--EPY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1273)
Q Consensus 179 G~d~~Sygy~g~~g~~~h~~~--~~Y-----G~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPa 251 (1273)
|.+..|||++-.+...||++. -.| .+.+.++|.|+|++|++.|+++|.+||+.+|+||.+++ +..+||+
T Consensus 107 Gs~~qswGw~l~~~~l~H~g~~~~~yp~~~~~p~~~vp~ri~viLDm~egtl~F~~~~e~LGvAFRgL~----~~~LYP~ 182 (242)
T KOG3953|consen 107 GSNSQSWGWDLGRNVLYHDGQVAGLYPALNRQPKYNVPDRILVILDMIEGTLSFAADGEYLGVAFRGLK----DKKLYPA 182 (242)
T ss_pred CCCCCccceecccceeeecCccccccccccCCchhcCCceEEEEEeeccceEEEEECCeEEeeeecCCC----CCcceee
Confidence 999999999988888999872 123 46789999999999999999999999999999999875 5799999
Q ss_pred EEeC-CCCEEEEecCCCCCccCCCCcccC
Q 000809 252 VSLS-QGERCVLNFGARPFKYPINCYLPL 279 (1273)
Q Consensus 252 VSl~-~g~~v~vNFG~~PFkYpp~Gf~pl 279 (1273)
||.. +...+++-+=++|+ +++..|+
T Consensus 183 Vsav~g~~Evtm~Ylg~~~---~~e~~~~ 208 (242)
T KOG3953|consen 183 VSAVWGHCEVTMKYLGTLD---VDEPDPL 208 (242)
T ss_pred eeehhcceeEEEEEeCCcC---cCCcccc
Confidence 9975 56788888877776 3444444
No 13
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=99.44 E-value=6.6e-13 Score=150.57 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=128.5
Q ss_pred eEEeCcccCCCCeEEeCCCcEEEeeC-ceeeEEeCceeecCEEEEEEEEEec---CeEEEEEecCCCCCCCCCCccCCCC
Q 000809 108 IVGLEESSICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGDADD 183 (1273)
Q Consensus 108 ~V~LD~~~~~~~l~LS~d~L~v~~~s-~~~sVRAn~~V~sGk~YFEV~I~s~---G~irIG~at~~~~l~~~~~vG~d~~ 183 (1273)
-++|++.....++.+|++.+++.|.+ .++.+.++.++++|.+||||+|+.- +.+.||++......+ ..+|.|.+
T Consensus 534 wfqlt~spsqrdmilsnecatlsgssleyrtilgsiafskgvhywevtidrhdgnsdivigvaqpavnrn--vmlgkdlh 611 (699)
T KOG4367|consen 534 WFQLTPSPSQRDMILSNECATLSGSSLEYRTILGSIAFSKGVHYWEVTIDRHDGNSDIVIGVAQPAVNRN--VMLGKDLH 611 (699)
T ss_pred eeeccCCchhhceeeecccceecccccchheeeeecccccceeEEEEEEeccCCCCCceEEecchhhhhc--eeeccccc
Confidence 35677777788999999999999887 8999999999999999999999852 478999999877655 36999999
Q ss_pred ceeEecCCcccc--cCCC--ccCCCCCCCCCEEEEEEeCCCCeEEEEECCeeee-cccccccccCCCCcEEEEEEeCCCC
Q 000809 184 SYAFDGRRVKKW--NKEA--EPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLG-VAFSGIRKMGPGFGYYPAVSLSQGE 258 (1273)
Q Consensus 184 Sygy~g~~g~~~--h~~~--~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG-~AF~~i~~~~~~~~lYPaVSl~~g~ 258 (1273)
+|+..-++.+.| |+.. ...-.....|-|||+.+|.+.|++.|++|.+-.+ .||+|.. +-||||+|+..+.
T Consensus 612 gwsmyvdgerswylhnethhnrvlggvtrgtvigvrldcdrgtmeytvndrqddsmaftnmr-----glyypafsvnans 686 (699)
T KOG4367|consen 612 GWSMYVDGERSWYLHNETHHNRVLGGVTRGTVIGVRLDCDRGTMEYTVNDRQDDSMAFTNMR-----GLYYPAFSVNANS 686 (699)
T ss_pred ceeEEEcCcceeEEeccccccccccccccccEEEEEEeccCCceEEEeccccCCceeeeccc-----ceeeeeeEeccCc
Confidence 999876666666 5442 2333467899999999999999999999998765 6999875 6899999999889
Q ss_pred EEEEecCCC
Q 000809 259 RCVLNFGAR 267 (1273)
Q Consensus 259 ~v~vNFG~~ 267 (1273)
++++.-|-.
T Consensus 687 sitvhtgls 695 (699)
T KOG4367|consen 687 SITVHTGLS 695 (699)
T ss_pred eEEEecCCC
Confidence 999998854
No 14
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=99.26 E-value=1.6e-12 Score=157.65 Aligned_cols=152 Identities=32% Similarity=0.569 Sum_probs=118.6
Q ss_pred eCCCcEEEee--CceeeEEeCc--eeecC-----EEEEEEEEEec--------CeEEEEEecCCC--CCC------CCCC
Q 000809 123 AKLPLLVESL--AMFSSARANV--CVWKG-----KWMYEVTLETS--------GVQQLGWATLSC--PFT------DHKG 177 (1273)
Q Consensus 123 S~d~L~v~~~--s~~~sVRAn~--~V~sG-----k~YFEV~I~s~--------G~irIG~at~~~--~l~------~~~~ 177 (1273)
.+.+|.++.. ...+++|-|. ||..| |||||..|+.. .+.||||+.... |.. ..+|
T Consensus 644 p~r~lllqtrlin~vss~rpniflgvaegsaqykkwy~el~id~~dpf~tae~thlrvgwass~gyap~pggge~wggng 723 (5019)
T KOG2243|consen 644 PGRDLLLQTRLINDVSSIRPNIFLGVAEGSAQYKKWYFELIIDHTDPFLTAEATHLRVGWASSEGYAPCPGGGEEWGGNG 723 (5019)
T ss_pred CcchhhHHHHhhhhhhhcCCceeEeeccchHHHHHHHHHHhhhcCCcceecccceeeeeeeccCCCCCCCCCcccccCCC
Confidence 3344444443 3677888876 44444 89999998753 489999998763 332 3568
Q ss_pred ccCCCCceeEecCCcccccCCCcc-C----CCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEE
Q 000809 178 VGDADDSYAFDGRRVKKWNKEAEP-Y----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAV 252 (1273)
Q Consensus 178 vG~d~~Sygy~g~~g~~~h~~~~~-Y----G~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaV 252 (1273)
+|+|-+||||+|-. .|.+.... . ---.+..|||.||+|+....|+|-+||+.+...|++.. ..+-+||.+
T Consensus 724 vgddl~sygfdglh--lwsg~i~r~vas~nqhllrsddvisccldl~~psisfringqpvqgmfenfn---~dglffpv~ 798 (5019)
T KOG2243|consen 724 VGDDLFSYGFDGLH--LWSGCIARAVASPNQHLLRSDDVISCCLDLGAPSISFRINGQPVQGMFENFN---IDGLFFPVM 798 (5019)
T ss_pred ccchhhhcCCCcch--hhcccchhhhcChhhhhhcccchhhhhhhcCCCceEEEECCccchhHHhcCC---CcceeeeeE
Confidence 99999999998864 67765311 1 12467899999999999999999999999988899864 468899999
Q ss_pred EeCCCCEEEEecCCC--CCcc-CCCCcccC
Q 000809 253 SLSQGERCVLNFGAR--PFKY-PINCYLPL 279 (1273)
Q Consensus 253 Sl~~g~~v~vNFG~~--PFkY-pp~Gf~pl 279 (1273)
|++.|.+|++-.|++ .|+| ||+||.|+
T Consensus 799 sfsagikvrfllggrhgefkflpp~gyapc 828 (5019)
T KOG2243|consen 799 SFSAGIKVRFLLGGRHGEFKFLPPPGYAPC 828 (5019)
T ss_pred eeccCeEEEEEecccccceeecCCCCCccH
Confidence 999999999999998 5999 88999998
No 15
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.99 E-value=2.3e-10 Score=97.17 Aligned_cols=49 Identities=31% Similarity=0.749 Sum_probs=43.8
Q ss_pred CCccCccccccccCcEEecCCCc-cchHHHHHhhcCCCCCCCCccccccc
Q 000809 1217 DDGMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~lPCgH~-~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
|+..|+||++.+++++++||||. +|..|+.+++.+..+||+||++|++|
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 35789999999999999999999 99999999999999999999999986
No 16
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.89 E-value=8.6e-10 Score=117.35 Aligned_cols=61 Identities=25% Similarity=0.460 Sum_probs=50.0
Q ss_pred CCCCCCCCccCccccccccCcEEecCCCccchHHHHHhhcC----------------CCCCCCCcccccc--ccccccc
Q 000809 1211 GRETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN----------------CLRCFFCNATVLE--VVKVDEK 1271 (1273)
Q Consensus 1211 ~~~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~----------------~~~CP~CR~~i~~--v~~~~~~ 1271 (1273)
...+..+++.|+||++..+|||+++|||.||+.||.+|+.. ...||.||++|+. ++++.|+
T Consensus 11 ~~~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr 89 (193)
T PLN03208 11 TLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR 89 (193)
T ss_pred eeccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence 34556678999999999999999999999999999998642 3589999999765 5566543
No 17
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.86 E-value=1.5e-09 Score=99.42 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=42.4
Q ss_pred CCCCccCccccccccCcEEecCCCccchHHHHHhhcC-CCCCCCCcccccc
Q 000809 1215 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1264 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~-~~~CP~CR~~i~~ 1264 (1273)
+|+++.||||.++|+|||++||||+|+++||.+|+.. ..+||+|+++++.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4789999999999999999999999999999999988 8899999999875
No 18
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.80 E-value=3.3e-09 Score=93.45 Aligned_cols=46 Identities=15% Similarity=0.165 Sum_probs=43.2
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1263 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~ 1263 (1273)
++.||||.+.|+|||.+||||+||+.||.+++....+||+|+.+++
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~ 46 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLT 46 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence 4689999999999999999999999999999988889999999974
No 19
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.70 E-value=9.3e-09 Score=84.67 Aligned_cols=38 Identities=32% Similarity=0.738 Sum_probs=30.8
Q ss_pred CccccccccCcEEecCCCccchHHHHHhhcCC----CCCCCC
Q 000809 1221 CCICYASEADAQFVPCSHRSCHGCISRHLLNC----LRCFFC 1258 (1273)
Q Consensus 1221 CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~----~~CP~C 1258 (1273)
||||.+.++|||.|+|||+||.+||.+++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998763 369987
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.5e-09 Score=112.03 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=49.7
Q ss_pred CCCCccCccccccccCcEEecCCCccchHHHHHhhcC---CCCCCCCccc--ccccccccc
Q 000809 1215 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN---CLRCFFCNAT--VLEVVKVDE 1270 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~---~~~CP~CR~~--i~~v~~~~~ 1270 (1273)
+...|.|.||++.-+|||.+.|||-||+.||-+|+.. ++.||+|++. +++|++|.|
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 3557999999999999999999999999999999874 6689999998 677888865
No 21
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=98.68 E-value=4e-08 Score=118.20 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=122.1
Q ss_pred eEEeCcccC-CCCeEEeCCCcEEEee------CceeeEEeCceee--cCEEEEEEEEEec---CeEEEEEecCCCCCCCC
Q 000809 108 IVGLEESSI-CGDVRIAKLPLLVESL------AMFSSARANVCVW--KGKWMYEVTLETS---GVQQLGWATLSCPFTDH 175 (1273)
Q Consensus 108 ~V~LD~~~~-~~~l~LS~d~L~v~~~------s~~~sVRAn~~V~--sGk~YFEV~I~s~---G~irIG~at~~~~l~~~ 175 (1273)
.-.||+.+. +...+.+.|.....-. ...+.+.++..+. -|.+||||.|.+. |.+.||.....++.+.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~gi~f~~~~~~~~~dvg~~~~~~~~~~N~~~~~Fe~~i~d~g~~~~i~i~~~~~~~~~~~- 109 (469)
T KOG1477|consen 31 PCEVNTINGSDFFTKNGPDMGIAFYTPPALLYHDVGVVQAGEPLPANFGIYYFEFDILDYGIEGRIKIGFLIDSFSIIE- 109 (469)
T ss_pred cceEeccCCceeEEEEcCCcceeeecCccccCCCcceeeCCCCCCcccccceeeeeHHHhhhhhceEEEEEeccccccc-
Confidence 445666554 3344455554443211 2456666666664 5699999999864 6788998888887765
Q ss_pred CCccCCCCceeEecCCccccc-CC--CccCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEE--
Q 000809 176 KGVGDADDSYAFDGRRVKKWN-KE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYP-- 250 (1273)
Q Consensus 176 ~~vG~d~~Sygy~g~~g~~~h-~~--~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYP-- 250 (1273)
..|+..+||+|+|+.|.+++ +. ++.|+++++.||.|||+++..+.+|+|++||..+|.+++.... .-+.+
T Consensus 110 -~~g~~~~s~~y~g~~g~l~~~~~~~~~~~~~~~~~~D~ig~~~~~~~q~i~~t~~g~~~~~~~~~~~~----~~~~~~~ 184 (469)
T KOG1477|consen 110 -SEGYTMNSLGYHGNSGLLDNGGAELGEEFGPTFTTGDEIGCGINEITQEIFFTKNGTEVGEIIKPLSP----DLLEENG 184 (469)
T ss_pred -ccchhhhhhcccCCchhhhhhhhhhchhhcCCCCccceeeeccchhhheeeeccCccccccccccccc----ccccccc
Confidence 47787789999999999999 43 4679999999999999999999999999999999999987652 23333
Q ss_pred --EEEeCCCCEEEEecC-CCCCccCCCC
Q 000809 251 --AVSLSQGERCVLNFG-ARPFKYPINC 275 (1273)
Q Consensus 251 --aVSl~~g~~v~vNFG-~~PFkYpp~G 275 (1273)
++.+..++.|.+||| ..+|.|+..+
T Consensus 185 n~~~~~s~~~~I~~~~g~~~~~~fd~~~ 212 (469)
T KOG1477|consen 185 NLAWLFSPNEEVEVNFGLEEEFRFDFSG 212 (469)
T ss_pred ceeeEeccCceeeeeecCCCceeecccc
Confidence 444568899999999 7789997654
No 22
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.63 E-value=1.7e-08 Score=81.52 Aligned_cols=38 Identities=34% Similarity=0.823 Sum_probs=34.3
Q ss_pred CccccccccCc-EEecCCCccchHHHHHhhcCCCCCCCC
Q 000809 1221 CCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFC 1258 (1273)
Q Consensus 1221 CpIC~~~~~dp-V~lPCgH~~C~~CI~~~l~~~~~CP~C 1258 (1273)
|+||++.+++| ++++|||+||+.||.+++....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999999999999988999998
No 23
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.57 E-value=3.2e-08 Score=109.38 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=45.4
Q ss_pred CCCccCccccccccCc--------EEecCCCccchHHHHHhhcCCCCCCCCccccccccc
Q 000809 1216 ADDGMCCICYASEADA--------QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dp--------V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~~ 1267 (1273)
.++..|+||++.+.++ ++++|||+||..||.+|+...++||.||+++..|++
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~v~~ 231 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFISVIK 231 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeEEee
Confidence 4568899999976653 667899999999999999999999999999988865
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.7e-08 Score=108.65 Aligned_cols=48 Identities=21% Similarity=0.577 Sum_probs=44.7
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
...|.||++.+.||..+||||.||.+||..|......||.||++...-
T Consensus 239 ~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps 286 (293)
T KOG0317|consen 239 TRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPS 286 (293)
T ss_pred CCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence 489999999999999999999999999999999999999999987653
No 25
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.44 E-value=7.4e-08 Score=79.65 Aligned_cols=40 Identities=28% Similarity=0.569 Sum_probs=35.5
Q ss_pred cCcccccccc---CcEEecCCCccchHHHHHhhcCCCCCCCCc
Q 000809 1220 MCCICYASEA---DAQFVPCSHRSCHGCISRHLLNCLRCFFCN 1259 (1273)
Q Consensus 1220 ~CpIC~~~~~---dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR 1259 (1273)
.|+||++.+. .++.++|||+||.+||.+|+.++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 5999999874 567899999999999999999999999998
No 26
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=3.9e-08 Score=83.83 Aligned_cols=51 Identities=29% Similarity=0.575 Sum_probs=45.8
Q ss_pred ccCccccccccCcEEecCCCc-cchHHHHHhhc-CCCCCCCCccccccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHR-SCHGCISRHLL-NCLRCFFCNATVLEVVKVD 1269 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~-~C~~CI~~~l~-~~~~CP~CR~~i~~v~~~~ 1269 (1273)
+.|.|||+.+.|.|+.-|||. .|..|..+.+. ....||+||+||.+|++-.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 679999999999999999998 59999998876 4779999999999998754
No 27
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.7e-07 Score=110.44 Aligned_cols=52 Identities=31% Similarity=0.456 Sum_probs=46.5
Q ss_pred CCCCCCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1213 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1213 ~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
....+++.|+||.+.+.+||++||||.||..||..++.....||.||.++..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3345678999999999999999999999999999999887889999998754
No 28
>PHA02926 zinc finger-like protein; Provisional
Probab=98.23 E-value=5.6e-07 Score=97.10 Aligned_cols=52 Identities=21% Similarity=0.477 Sum_probs=42.7
Q ss_pred CCCccCccccccccC---------cEEecCCCccchHHHHHhhcCC------CCCCCCccccccccc
Q 000809 1216 ADDGMCCICYASEAD---------AQFVPCSHRSCHGCISRHLLNC------LRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d---------pV~lPCgH~~C~~CI~~~l~~~------~~CP~CR~~i~~v~~ 1267 (1273)
++|..|+||++..-+ .++.+|+|.||..||.+|.... ..||+||+.+..|++
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 567889999987432 4778999999999999998642 459999999888765
No 29
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.20 E-value=8.5e-07 Score=72.00 Aligned_cols=38 Identities=32% Similarity=0.927 Sum_probs=35.4
Q ss_pred CccccccccCcE-EecCCCccchHHHHHhhc--CCCCCCCC
Q 000809 1221 CCICYASEADAQ-FVPCSHRSCHGCISRHLL--NCLRCFFC 1258 (1273)
Q Consensus 1221 CpIC~~~~~dpV-~lPCgH~~C~~CI~~~l~--~~~~CP~C 1258 (1273)
|+||.+.+.+++ +++|||.||..|+.+++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 899999999999999998 46689988
No 30
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=6.2e-07 Score=93.79 Aligned_cols=47 Identities=28% Similarity=0.566 Sum_probs=40.9
Q ss_pred CccCccccccccC--cEEecCCCccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1218 DGMCCICYASEAD--AQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1218 e~~CpIC~~~~~d--pV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
-+-||||++-.+. ||.+.|||+||+.||+..+..-.+||.||..|+.
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~ 179 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITH 179 (187)
T ss_pred ccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccch
Confidence 3679999987655 5668999999999999999999999999987764
No 31
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.11 E-value=2.1e-06 Score=69.28 Aligned_cols=43 Identities=26% Similarity=0.654 Sum_probs=37.6
Q ss_pred cCccccccccCcEEec-CCCccchHHHHHhhcC-CCCCCCCcccc
Q 000809 1220 MCCICYASEADAQFVP-CSHRSCHGCISRHLLN-CLRCFFCNATV 1262 (1273)
Q Consensus 1220 ~CpIC~~~~~dpV~lP-CgH~~C~~CI~~~l~~-~~~CP~CR~~i 1262 (1273)
.|+||++.+.+++.++ |||.||..|+..++.. ...||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 4999999997877766 9999999999999886 67899999864
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.10 E-value=9.7e-07 Score=99.32 Aligned_cols=47 Identities=34% Similarity=0.588 Sum_probs=43.7
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
..|-||.+.++-|+++||||+||.=||+.||...+.||.|+.++++-
T Consensus 24 LRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 24 LRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred HHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchh
Confidence 45999999999999999999999999999999999999999987653
No 33
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=1.7e-06 Score=99.09 Aligned_cols=53 Identities=25% Similarity=0.647 Sum_probs=47.1
Q ss_pred CccCccccccccCcEEecCCCcc-chHHHHHhhcCCCCCCCCcccccccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRS-CHGCISRHLLNCLRCFFCNATVLEVVKVDE 1270 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~-C~~CI~~~l~~~~~CP~CR~~i~~v~~~~~ 1270 (1273)
...|.||++..+|.++|||.|.+ |.+|.+........||+||++|+....|..
T Consensus 290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred CCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 56899999999999999999996 999999887667789999999999877643
No 34
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.04 E-value=1.6e-06 Score=95.80 Aligned_cols=47 Identities=30% Similarity=0.453 Sum_probs=43.3
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
..|-||.+.++-|++++|||.||.=||++||.+-+.||.||.+-.++
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es 72 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES 72 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence 46999999999999999999999999999999999999999985443
No 35
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.02 E-value=3.5e-06 Score=69.97 Aligned_cols=41 Identities=22% Similarity=0.711 Sum_probs=35.8
Q ss_pred cCccccccc---cCcEEecCCCccchHHHHHhhcCCCCCCCCcc
Q 000809 1220 MCCICYASE---ADAQFVPCSHRSCHGCISRHLLNCLRCFFCNA 1260 (1273)
Q Consensus 1220 ~CpIC~~~~---~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~ 1260 (1273)
.|+||+..+ ..+++++|||+||..|+.+.......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 389999888 35788999999999999998866779999985
No 36
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.00 E-value=4.6e-06 Score=64.93 Aligned_cols=38 Identities=34% Similarity=0.842 Sum_probs=35.0
Q ss_pred CccccccccCcEEecCCCccchHHHHHhhc-CCCCCCCC
Q 000809 1221 CCICYASEADAQFVPCSHRSCHGCISRHLL-NCLRCFFC 1258 (1273)
Q Consensus 1221 CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~-~~~~CP~C 1258 (1273)
|+||++..++++++||||.||..|+..++. ....||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 899999999999999999999999999987 56679987
No 37
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.98 E-value=2.9e-06 Score=70.43 Aligned_cols=30 Identities=27% Similarity=0.722 Sum_probs=21.5
Q ss_pred CccccccccC----cEEecCCCccchHHHHHhhcC
Q 000809 1221 CCICYASEAD----AQFVPCSHRSCHGCISRHLLN 1251 (1273)
Q Consensus 1221 CpIC~~~~~d----pV~lPCgH~~C~~CI~~~l~~ 1251 (1273)
||||.+ +.+ |+.|||||++|+.|+.+.+.+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhc
Confidence 899999 888 999999999999999998874
No 38
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=1.4e-06 Score=96.70 Aligned_cols=48 Identities=29% Similarity=0.750 Sum_probs=42.8
Q ss_pred CccCccccccccCcEEecCCCc-cchHHHHHhhcCCCCCCCCccccccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEVVKVD 1269 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~-~C~~CI~~~l~~~~~CP~CR~~i~~v~~~~ 1269 (1273)
+.+|.|||+.++|.|||+|||. .|..|-++. ..||+||+.|.+|++|-
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 6899999999999999999996 699998754 38999999999998874
No 39
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=4.3e-06 Score=92.03 Aligned_cols=45 Identities=27% Similarity=0.682 Sum_probs=41.1
Q ss_pred CCCCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCc
Q 000809 1215 DADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCN 1259 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR 1259 (1273)
..++..||||++.+++|+++||||+||+.||..++...-.||.||
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr 54 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCR 54 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccC
Confidence 357789999999999999999999999999999987556899999
No 40
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=6.4e-06 Score=97.93 Aligned_cols=52 Identities=25% Similarity=0.444 Sum_probs=45.6
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCC-----CCCCCCcccccc--ccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNC-----LRCFFCNATVLE--VVKVD 1269 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~-----~~CP~CR~~i~~--v~~~~ 1269 (1273)
+..||||+..+.-|+.+-|||+||..||-+.|... ..||+||..|.. +.++.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeee
Confidence 67899999999999999999999999999998764 479999999877 66653
No 41
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5.8e-06 Score=91.36 Aligned_cols=46 Identities=26% Similarity=0.574 Sum_probs=40.0
Q ss_pred CccCccccccccCcEEecCCCccchHHHHH-hhcCCC-CCCCCccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISR-HLLNCL-RCFFCNATVL 1263 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~-~l~~~~-~CP~CR~~i~ 1263 (1273)
++.|+||++.+.+|+.+||||+||..||.. |-.... .||.||+...
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhcc
Confidence 678999999999999999999999999998 544444 4999999743
No 42
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=1.4e-05 Score=91.03 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=41.5
Q ss_pred CCCCccCccccccccCc-------------EEecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1215 DADDGMCCICYASEADA-------------QFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dp-------------V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
..+|..|.||++.|-.| --|||||.+--+|.+.|+.+.++||+||.|
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p 343 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRP 343 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCc
Confidence 35788999999984332 679999999999999999999999999999
No 43
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.72 E-value=2.5e-05 Score=71.90 Aligned_cols=42 Identities=33% Similarity=0.672 Sum_probs=34.8
Q ss_pred CccCccccccccCc-------------EEecCCCccchHHHHHhhcCCCCCCCCc
Q 000809 1218 DGMCCICYASEADA-------------QFVPCSHRSCHGCISRHLLNCLRCFFCN 1259 (1273)
Q Consensus 1218 e~~CpIC~~~~~dp-------------V~lPCgH~~C~~CI~~~l~~~~~CP~CR 1259 (1273)
++.|+||.+.+.++ +..+|||.|...||.+|+....+||+||
T Consensus 19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 33499999988333 4568999999999999999999999998
No 44
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=1.5e-05 Score=89.42 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=43.4
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCC-CCCCCcccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCL-RCFFCNATVLEVV 1266 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~-~CP~CR~~i~~v~ 1266 (1273)
...|+||+..+.-||.++|+|+||.-||+-.-.+++ +|++||.||+.-+
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i 56 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI 56 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence 356999999999999999999999999998877655 5999999998764
No 45
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=2.6e-05 Score=96.64 Aligned_cols=46 Identities=22% Similarity=0.548 Sum_probs=42.8
Q ss_pred CCCccCccccccccC-----cEEecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1216 ADDGMCCICYASEAD-----AQFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d-----pV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
..+..|+||.+.+.. |-.+||||.||..|+++|+...++||+||..
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhh
Confidence 347889999999999 7899999999999999999999999999994
No 46
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.55 E-value=2.5e-05 Score=69.65 Aligned_cols=41 Identities=24% Similarity=0.613 Sum_probs=24.4
Q ss_pred ccCccccccccCcEE-ecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1219 GMCCICYASEADAQF-VPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~-lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
..|++|.+.|++||. .-|.|+||..||...+.+ .||.|+.|
T Consensus 8 LrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~--~CPvC~~P 49 (65)
T PF14835_consen 8 LRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS--ECPVCHTP 49 (65)
T ss_dssp TS-SSS-S--SS-B---SSS--B-TTTGGGGTTT--B-SSS--B
T ss_pred cCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC--CCCCcCCh
Confidence 469999999999986 589999999999987753 59999999
No 47
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=97.55 E-value=2e-05 Score=95.40 Aligned_cols=89 Identities=28% Similarity=0.449 Sum_probs=74.5
Q ss_pred eeEecCCcccccCC--CccCCCCCCCCCEEEEEEeCCCCeEEEEECCeeeecccccccccCCCCcEEEEEEeC-CCCEEE
Q 000809 185 YAFDGRRVKKWNKE--AEPYGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLS-QGERCV 261 (1273)
Q Consensus 185 ygy~g~~g~~~h~~--~~~YG~~f~~GDVIGC~LDld~g~I~FtkNG~~LG~AF~~i~~~~~~~~lYPaVSl~-~g~~v~ 261 (1273)
++|+++++..+... +..||+.+..||+|||++|...+.-+|++||..+|++|.... ..+||.|.+. .+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~i~~~~~~~~~~~~~~~~~~~~gi~f~~~~-----~~~~~dvg~~~~~~~~~ 75 (469)
T KOG1477|consen 1 YGYHGDDGNFFLKSGDGQLYGPVFTTGDVIPCEVNTINGSDFFTKNGPDMGIAFYTPP-----ALLYHDVGVVQAGEPLP 75 (469)
T ss_pred CCCcccchhhhhhcccccccCCcCCccccccceEeccCCceeEEEEcCCcceeeecCc-----cccCCCcceeeCCCCCC
Confidence 46888888887654 578999999999999999999999999999999999998644 2367777775 678899
Q ss_pred EecCCCCCccCCCCccc
Q 000809 262 LNFGARPFKYPINCYLP 278 (1273)
Q Consensus 262 vNFG~~PFkYpp~Gf~p 278 (1273)
.|||..||.+.+..|..
T Consensus 76 ~N~~~~~Fe~~i~d~g~ 92 (469)
T KOG1477|consen 76 ANFGIYYFEFDILDYGI 92 (469)
T ss_pred cccccceeeeeHHHhhh
Confidence 99999999998764433
No 48
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=4.5e-05 Score=87.78 Aligned_cols=52 Identities=33% Similarity=0.694 Sum_probs=42.3
Q ss_pred CCCCCccCccccccccCcEEecCCCccch-HHHHHhhcCCCCCCCCccccccccccc
Q 000809 1214 TDADDGMCCICYASEADAQFVPCSHRSCH-GCISRHLLNCLRCFFCNATVLEVVKVD 1269 (1273)
Q Consensus 1214 ~~~de~~CpIC~~~~~dpV~lPCgH~~C~-~CI~~~l~~~~~CP~CR~~i~~v~~~~ 1269 (1273)
+++-..+|.||.+.+.+.+++||||++|+ .| .+|+ +.||.||+.|..+.++.
T Consensus 301 ~~~~p~lcVVcl~e~~~~~fvpcGh~ccct~c-s~~l---~~CPvCR~rI~~~~k~y 353 (355)
T KOG1571|consen 301 ELPQPDLCVVCLDEPKSAVFVPCGHVCCCTLC-SKHL---PQCPVCRQRIRLVRKRY 353 (355)
T ss_pred ccCCCCceEEecCCccceeeecCCcEEEchHH-HhhC---CCCchhHHHHHHHHHHh
Confidence 34557899999999999999999999885 44 3343 56999999999887764
No 49
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=5.5e-05 Score=94.02 Aligned_cols=50 Identities=26% Similarity=0.571 Sum_probs=43.2
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcC-CCCCCCCcccc--cccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATV--LEVVKV 1268 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~-~~~CP~CR~~i--~~v~~~ 1268 (1273)
..||.|.+.++|.|++.|||+||..||..-... ..+||-|.+++ .||.+|
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I 696 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI 696 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence 579999999999999999999999999987654 67999999984 555554
No 50
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.36 E-value=6.6e-05 Score=86.32 Aligned_cols=49 Identities=24% Similarity=0.650 Sum_probs=43.5
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcC--CCCCCCCccccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~i~~v~~ 1267 (1273)
.+|.||.+.-+|.-+-||||..|..|+..|..+ .++|||||..|....+
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~ 420 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEP 420 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccc
Confidence 479999999999999999999999999999866 4799999998876544
No 51
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00014 Score=84.31 Aligned_cols=48 Identities=25% Similarity=0.583 Sum_probs=40.7
Q ss_pred ccCccccccccC---cEEecCCCccchHHHHHhhcCCCC-CCCCcccccccc
Q 000809 1219 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLLNCLR-CFFCNATVLEVV 1266 (1273)
Q Consensus 1219 ~~CpIC~~~~~d---pV~lPCgH~~C~~CI~~~l~~~~~-CP~CR~~i~~v~ 1266 (1273)
+.|.||++-++. .++|||+|.|-..||..|+...++ ||+|++.+-+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 499999998776 377999999999999999988755 999999765543
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00012 Score=86.84 Aligned_cols=52 Identities=27% Similarity=0.643 Sum_probs=47.5
Q ss_pred CCCCCCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1213 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1213 ~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
..+..++.|.||+...-+||.+||||.||..||.+.+.....||.||.++.+
T Consensus 79 ~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 79 EEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred ccccchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 3447899999999999999999999999999999988888999999999875
No 53
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.00016 Score=81.10 Aligned_cols=45 Identities=29% Similarity=0.724 Sum_probs=38.3
Q ss_pred ccCccccccccC---cEEecCCCccchHHHHHhhc-CCCCCCCCccccc
Q 000809 1219 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLL-NCLRCFFCNATVL 1263 (1273)
Q Consensus 1219 ~~CpIC~~~~~d---pV~lPCgH~~C~~CI~~~l~-~~~~CP~CR~~i~ 1263 (1273)
-.|.||++.+.. -+.|||.|.|-..|+..|+. .+.+||.||++|-
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 569999986543 36799999999999999998 5889999999873
No 54
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=5.9e-05 Score=86.29 Aligned_cols=52 Identities=23% Similarity=0.459 Sum_probs=44.2
Q ss_pred CCCccCccccccccCcEEec-CCCccchHHHHHhhcC-CCCCCCCccccccccc
Q 000809 1216 ADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLLN-CLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dpV~lP-CgH~~C~~CI~~~l~~-~~~CP~CR~~i~~v~~ 1267 (1273)
.-++.||||+++.+...+++ |.|.||++||-..+.. .+.||-||+.+..-..
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skrs 94 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRS 94 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccccc
Confidence 44678999999999998876 9999999999998765 7799999998765543
No 55
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.00059 Score=76.10 Aligned_cols=54 Identities=24% Similarity=0.453 Sum_probs=44.5
Q ss_pred CCCCCCccCccccccccCcEE-ecCCCccchHHHHHhhcCC--CCCCCCcccccccc
Q 000809 1213 ETDADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLNC--LRCFFCNATVLEVV 1266 (1273)
Q Consensus 1213 ~~~~de~~CpIC~~~~~dpV~-lPCgH~~C~~CI~~~l~~~--~~CP~CR~~i~~v~ 1266 (1273)
+....+.+||+|...++.|-. .||||++|+.||....+.+ -+||-|..+.....
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCcchh
Confidence 444567899999999999954 6799999999999987764 79999999876443
No 56
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.87 E-value=0.00027 Score=80.73 Aligned_cols=54 Identities=22% Similarity=0.425 Sum_probs=47.1
Q ss_pred CCCCCccCccccccccCcEEe-cCCCccchHHHHHhhcCCCCCCCCccccccccc
Q 000809 1214 TDADDGMCCICYASEADAQFV-PCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1214 ~~~de~~CpIC~~~~~dpV~l-PCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~~ 1267 (1273)
+.....+|.+|...+.|+.++ -|=|+||++||-+|+..+.+||.|...|....+
T Consensus 11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t~p 65 (331)
T KOG2660|consen 11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKTHP 65 (331)
T ss_pred hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCccc
Confidence 345677899999999999775 599999999999999999999999998876643
No 57
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.00059 Score=79.63 Aligned_cols=53 Identities=25% Similarity=0.553 Sum_probs=45.6
Q ss_pred CCCccCccccccccCcE-----E---ecCCCccchHHHHHhh--cC-----CCCCCCCcccccccccc
Q 000809 1216 ADDGMCCICYASEADAQ-----F---VPCSHRSCHGCISRHL--LN-----CLRCFFCNATVLEVVKV 1268 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dpV-----~---lPCgH~~C~~CI~~~l--~~-----~~~CP~CR~~i~~v~~~ 1268 (1273)
..+..|.||++...+.+ + .+|.|.||-.||+.|. .. .+.|||||.+.+.|.+-
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 56889999999998887 5 6699999999999997 33 57899999999888764
No 58
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.68 E-value=0.0013 Score=62.27 Aligned_cols=47 Identities=28% Similarity=0.511 Sum_probs=35.0
Q ss_pred CCccCcccccccc-----------C-c-EEecCCCccchHHHHHhhcC---CCCCCCCccccc
Q 000809 1217 DDGMCCICYASEA-----------D-A-QFVPCSHRSCHGCISRHLLN---CLRCFFCNATVL 1263 (1273)
Q Consensus 1217 de~~CpIC~~~~~-----------d-p-V~lPCgH~~C~~CI~~~l~~---~~~CP~CR~~i~ 1263 (1273)
+|+.|.||...+. | | |.-.|+|.|-..||.+|+.+ .+.||+||++.+
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3556666655433 2 3 45579999999999999975 579999999864
No 59
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.50 E-value=0.0021 Score=72.05 Aligned_cols=75 Identities=19% Similarity=0.359 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCccCccccccccCcEEec-CCCccchHHHHHhhc-CCCCCCCCcc
Q 000809 1183 LSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQFVP-CSHRSCHGCISRHLL-NCLRCFFCNA 1260 (1273)
Q Consensus 1183 ~~~i~~l~~f~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~lP-CgH~~C~~CI~~~l~-~~~~CP~CR~ 1260 (1273)
..+.+.|+.+.++-+......+ +...-.-.++ ...||.|..+.++|+-+| |+|.||+.||...|+ ++..||.|..
T Consensus 242 qpdvqsWe~Yq~r~~a~~~~~D-qv~k~~~~~i--~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 242 QPDVQSWEKYQQRTKAVAEIPD-QVYKMQPPNI--SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccchHHHHHHHHHHHhhhhCch-hhhccCCCCc--cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 3567778877655443322111 1211011111 278999999999999995 899999999998765 5889999988
No 60
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.16 E-value=0.0026 Score=76.13 Aligned_cols=52 Identities=27% Similarity=0.610 Sum_probs=46.0
Q ss_pred CCCCccCccccccccCcEE-ecCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1215 DADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~-lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
.+++..|+||...+.||+. +.|||.||..|+..++...+.||.|+..++...
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~ 70 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAE 70 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhh
Confidence 3567899999999999999 499999999999999988899999998865443
No 61
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.13 E-value=0.0022 Score=55.90 Aligned_cols=46 Identities=22% Similarity=0.561 Sum_probs=38.3
Q ss_pred CCccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1217 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
.+..|..|...-+..+++||||..|+.|-.- .+-+.||||.++++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccceeeccccCh--hhccCCCCCCCcccC
Confidence 4567999999888899999999999999653 234689999999875
No 62
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=96.01 E-value=0.0042 Score=70.94 Aligned_cols=52 Identities=33% Similarity=0.650 Sum_probs=43.8
Q ss_pred CCCCccCccccccccCcEEecCCCccchHHHHHh--hcCCCCCCCCcccccccc
Q 000809 1215 DADDGMCCICYASEADAQFVPCSHRSCHGCISRH--LLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~--l~~~~~CP~CR~~i~~v~ 1266 (1273)
+.|+..|.||..-.+-...+||+|..|..|.-+. |-..+.||+||+.-+.|+
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccceEE
Confidence 3467799999999988889999999999998764 556789999999866654
No 63
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=95.90 E-value=0.0048 Score=54.49 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCccCccccccccCcEE-ecCCCccchHHHHHhhcC--CCCCCC
Q 000809 1216 ADDGMCCICYASEADAQF-VPCSHRSCHGCISRHLLN--CLRCFF 1257 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dpV~-lPCgH~~C~~CI~~~l~~--~~~CP~ 1257 (1273)
.-.+.|||....++|||. ..|||+|.++.|.+++.+ ...||.
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 346889999999999998 489999999999999933 558998
No 64
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.71 E-value=0.0061 Score=70.17 Aligned_cols=30 Identities=20% Similarity=0.619 Sum_probs=26.0
Q ss_pred cCCCccchHHHHHhhcC-CCCCCCCcccccc
Q 000809 1235 PCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1264 (1273)
Q Consensus 1235 PCgH~~C~~CI~~~l~~-~~~CP~CR~~i~~ 1264 (1273)
+|||+||.+|+.+++.. ...||.|+.++..
T Consensus 25 ~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHTLCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcccHHHHHHHhcCCCCCCCCCCCccch
Confidence 89999999999998755 4589999998765
No 65
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=95.38 E-value=0.0071 Score=64.68 Aligned_cols=44 Identities=23% Similarity=0.487 Sum_probs=40.6
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
.|+|.||-.-++.||.+.|||.||..|..+-...-..|..|.+.
T Consensus 196 PF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~ 239 (259)
T COG5152 196 PFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKA 239 (259)
T ss_pred ceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchh
Confidence 58999999999999999999999999998887777899999875
No 66
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.0072 Score=68.38 Aligned_cols=48 Identities=19% Similarity=0.425 Sum_probs=44.1
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
.|-|-||-..+.+||.+.|||.||..|..+++.....|++|.+.+..+
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g~ 288 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHGS 288 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhccccccCCcceecccccccc
Confidence 467999999999999999999999999999998889999999987655
No 67
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.03 E-value=0.021 Score=64.87 Aligned_cols=56 Identities=9% Similarity=0.230 Sum_probs=44.3
Q ss_pred CCCccCccccccccC---cEE-ecCCCccchHHHHHhhcCCCCCCCCcccc--cccccccccC
Q 000809 1216 ADDGMCCICYASEAD---AQF-VPCSHRSCHGCISRHLLNCLRCFFCNATV--LEVVKVDEKI 1272 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d---pV~-lPCgH~~C~~CI~~~l~~~~~CP~CR~~i--~~v~~~~~~~ 1272 (1273)
...+.|||+...|.. .|. .||||+|+..++.+.- .+..||.|..++ ++|++|+++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~ 172 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE 172 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence 457999999988854 344 5999999999999884 467899999994 5567776654
No 68
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.013 Score=69.90 Aligned_cols=47 Identities=21% Similarity=0.506 Sum_probs=36.7
Q ss_pred CCccCccccccc-----------------cCcEEecCCCccchHHHHHhhcC-CCCCCCCccccc
Q 000809 1217 DDGMCCICYASE-----------------ADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATVL 1263 (1273)
Q Consensus 1217 de~~CpIC~~~~-----------------~dpV~lPCgH~~C~~CI~~~l~~-~~~CP~CR~~i~ 1263 (1273)
+-..|+||++.. ++=.++||.|+|-++|+.+|+.. +-.||.||.|+-
T Consensus 570 ~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 570 RTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred ccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 344599999732 12345799999999999999985 559999999874
No 69
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.56 E-value=0.013 Score=65.45 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=38.6
Q ss_pred CCccCccccccccCcE----------EecCCCccchHHHHHhh--cCCCCCCCCcccccc
Q 000809 1217 DDGMCCICYASEADAQ----------FVPCSHRSCHGCISRHL--LNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV----------~lPCgH~~C~~CI~~~l--~~~~~CP~CR~~i~~ 1264 (1273)
++..|.||-...-+.+ .|.|+|+|-.-||+-|- ..+++||.|+..++-
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 5678999987654444 68999999999999984 347899999998764
No 70
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification]
Probab=94.54 E-value=0.0074 Score=74.97 Aligned_cols=115 Identities=29% Similarity=0.449 Sum_probs=87.6
Q ss_pred eEEEEEecCCCCCCCCCCccCCCCceeEecCCcccccCCCccCCCCCCCCCEEEEEEeCC---CCeEEEEECCeeeeccc
Q 000809 160 VQQLGWATLSCPFTDHKGVGDADDSYAFDGRRVKKWNKEAEPYGQSWVAGDIIGCCIDLD---SDEISFYRNGVSLGVAF 236 (1273)
Q Consensus 160 ~irIG~at~~~~l~~~~~vG~d~~Sygy~g~~g~~~h~~~~~YG~~f~~GDVIGC~LDld---~g~I~FtkNG~~LG~AF 236 (1273)
..+|||.-..+.. +++++..+++|.+.+.+-|+...+.|++.+...|+|||.++.. .-.+.|.+||+.++.+|
T Consensus 107 ~~~~~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~e~f~e~~~i~c~~~~~~~d~~~l~~~k~~~~~~~~~ 182 (558)
T KOG2242|consen 107 DVRIGWSLDSIRT----LLGDEPFSYGYSETGKKSCNSEVEKYGEKFPENDVIGCFADFEILDEVELSYEKNGQDLGESF 182 (558)
T ss_pred cccccccchhhhh----ccccccccccccccccchhhHHHHHHHhhcccccccchhhcccccccCcchhhhccchhhhhh
Confidence 4577777666433 5888999999999999999888899999999999999999964 57899999999999998
Q ss_pred ccccccCCCCcEEEEEEeCCCCEEEEecCCC--CCccCCCCcccC
Q 000809 237 SGIRKMGPGFGYYPAVSLSQGERCVLNFGAR--PFKYPINCYLPL 279 (1273)
Q Consensus 237 ~~i~~~~~~~~lYPaVSl~~g~~v~vNFG~~--PFkYpp~Gf~pl 279 (1273)
..-.....+..+||+|-- +...+..|||.+ +|.+.+.+|.-+
T Consensus 183 ~l~~~~~~~~~~~p~vl~-~~~~ve~~f~~~~ag~~~v~~~~~~i 226 (558)
T KOG2242|consen 183 LLSKEDLGGQALYPHVLR-KNCAVEGNFGQKAAGYEPVKEEYTFI 226 (558)
T ss_pred cchhhhccCcccCccccc-Ccceeccccccccccccccchhhhhh
Confidence 754322333469999854 456788999987 344434444333
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.21 E-value=0.017 Score=69.14 Aligned_cols=48 Identities=21% Similarity=0.498 Sum_probs=40.9
Q ss_pred CCCccCccccccccCcEEecCCCccchHHHHHhhcC-----CCCCCCCccccc
Q 000809 1216 ADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN-----CLRCFFCNATVL 1263 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~-----~~~CP~CR~~i~ 1263 (1273)
.++..|.+|.+.-.|++...|-|+||+-||.....+ +-+||.|-.+++
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 456789999999999999999999999999877532 458999998853
No 72
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.035 Score=61.38 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=43.5
Q ss_pred CCccCccccccccCc----EEecCCCccchHHHHHhhcCCCCCCCCccccccc
Q 000809 1217 DDGMCCICYASEADA----QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1217 de~~CpIC~~~~~dp----V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v 1265 (1273)
.-++||+|-+..++. |+-||||++|..|..+....+..||+|-.|+.+-
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdr 272 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDR 272 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCccc
Confidence 568999999988775 6679999999999999998899999999998764
No 73
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.96 E-value=0.014 Score=72.41 Aligned_cols=52 Identities=19% Similarity=0.275 Sum_probs=44.0
Q ss_pred CccCccccccccCcEE---ecCCCccchHHHHHhhcCCCCCCCCccccccccccc
Q 000809 1218 DGMCCICYASEADAQF---VPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKVD 1269 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~---lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~~~~ 1269 (1273)
...||+|.-...|-.. .+|+|.||..||..|-...++||.||.-+.+|+..+
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e 177 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE 177 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec
Confidence 4579999988777643 579999999999999999999999999988876543
No 74
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.92 E-value=0.024 Score=67.34 Aligned_cols=45 Identities=16% Similarity=0.371 Sum_probs=37.5
Q ss_pred CCccCccccccccCc----EEecCCCccchHHHHHhhcCCCCCCCCccccc
Q 000809 1217 DDGMCCICYASEADA----QFVPCSHRSCHGCISRHLLNCLRCFFCNATVL 1263 (1273)
Q Consensus 1217 de~~CpIC~~~~~dp----V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~ 1263 (1273)
|--+||+|++.|-+- +.++|.|.|-.+|+.+|+. .+||+||-..+
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 445899999999776 4678999999999999985 57999997655
No 75
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.43 E-value=0.051 Score=46.52 Aligned_cols=43 Identities=30% Similarity=0.602 Sum_probs=22.8
Q ss_pred Cccccccc--cCcEEec--CCCccchHHHHHhhcC-CCCCCCCccccc
Q 000809 1221 CCICYASE--ADAQFVP--CSHRSCHGCISRHLLN-CLRCFFCNATVL 1263 (1273)
Q Consensus 1221 CpIC~~~~--~dpV~lP--CgH~~C~~CI~~~l~~-~~~CP~CR~~i~ 1263 (1273)
||+|.+.+ +|.-+.| ||...|+-|-.+.+.+ +..||-||.+++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 78888876 4445665 8889999999999864 789999999863
No 76
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.36 E-value=0.032 Score=70.91 Aligned_cols=46 Identities=22% Similarity=0.554 Sum_probs=39.9
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcC--CCCCCCCccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLEV 1265 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~i~~v 1265 (1273)
..|+||.+ ..++++.+|||.+|.+|+...... +..||.||..+..-
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 899999999999999999998764 45799999986543
No 77
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.095 Score=60.38 Aligned_cols=47 Identities=17% Similarity=0.342 Sum_probs=39.8
Q ss_pred CCCccCccccccccCc-EEecCCCccchHHHHHhhcCCCCCCCCcccc
Q 000809 1216 ADDGMCCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFCNATV 1262 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dp-V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i 1262 (1273)
++...||+|.-...+| |..-.|-+||+.||-+++.+-+.||+..-|+
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 5678999999766666 5556799999999999999999999988774
No 78
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.069 Score=58.89 Aligned_cols=44 Identities=30% Similarity=0.597 Sum_probs=36.9
Q ss_pred CccccccccCcEEecCCCcc-chHHHHHhhcCCCCCCCCcccccccccc
Q 000809 1221 CCICYASEADAQFVPCSHRS-CHGCISRHLLNCLRCFFCNATVLEVVKV 1268 (1273)
Q Consensus 1221 CpIC~~~~~dpV~lPCgH~~-C~~CI~~~l~~~~~CP~CR~~i~~v~~~ 1268 (1273)
|-.|.......+++||.|.+ |..|-.. .+.||+|+.+.+.-+.|
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~s~~~v 205 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKTSSVEV 205 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc----CccCCCCcChhhceeec
Confidence 99999999999999999975 7799643 46799999998776654
No 79
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=92.08 E-value=0.052 Score=68.77 Aligned_cols=47 Identities=19% Similarity=0.550 Sum_probs=36.2
Q ss_pred CccCcccccccc--Cc-----EEecCCCccchHHHHHhhcC--CCCCCCCcccccc
Q 000809 1218 DGMCCICYASEA--DA-----QFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLE 1264 (1273)
Q Consensus 1218 e~~CpIC~~~~~--dp-----V~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~i~~ 1264 (1273)
-..|+|||.... |- ..-.|.|.|--+|+-+|..+ +.+||.||..|+-
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 457999998643 32 22348999999999999876 5699999988764
No 80
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.76 E-value=0.081 Score=48.65 Aligned_cols=46 Identities=24% Similarity=0.598 Sum_probs=22.5
Q ss_pred CccCcccccccc-C---cE--Ee--cCCCccchHHHHHhhcC---C--------CCCCCCccccc
Q 000809 1218 DGMCCICYASEA-D---AQ--FV--PCSHRSCHGCISRHLLN---C--------LRCFFCNATVL 1263 (1273)
Q Consensus 1218 e~~CpIC~~~~~-d---pV--~l--PCgH~~C~~CI~~~l~~---~--------~~CP~CR~~i~ 1263 (1273)
+..|+|||+... + |+ -- .|++.|-..|+.+|+++ . .+||+|+++|+
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 346999998754 2 22 22 57788888999999763 1 25999999986
No 81
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=91.36 E-value=0.15 Score=43.70 Aligned_cols=40 Identities=28% Similarity=0.697 Sum_probs=32.2
Q ss_pred cCccccc--cccCcEEecCC-----CccchHHHHHhhcC--CCCCCCCc
Q 000809 1220 MCCICYA--SEADAQFVPCS-----HRSCHGCISRHLLN--CLRCFFCN 1259 (1273)
Q Consensus 1220 ~CpIC~~--~~~dpV~lPCg-----H~~C~~CI~~~l~~--~~~CP~CR 1259 (1273)
.|.||++ ...++.+.||. |.+-.+|+.+|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 56778899996 66777999999865 45899995
No 82
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=90.56 E-value=0.23 Score=46.62 Aligned_cols=44 Identities=25% Similarity=0.326 Sum_probs=34.8
Q ss_pred ccCccccccccC----c-EEecCCCccchHHHHHhhcCCCCCCCCcccc
Q 000809 1219 GMCCICYASEAD----A-QFVPCSHRSCHGCISRHLLNCLRCFFCNATV 1262 (1273)
Q Consensus 1219 ~~CpIC~~~~~d----p-V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i 1262 (1273)
..||-|...|.. | +.=-|.|.|-..||.+|+.+...||+||++.
T Consensus 32 ~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w 80 (88)
T COG5194 32 GTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTW 80 (88)
T ss_pred CcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCcee
Confidence 467777765422 2 3346999999999999999999999999984
No 83
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.38 E-value=0.16 Score=52.22 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=37.0
Q ss_pred CccCccccccccC---cEEecCCC------ccchHHHHHhhcCCCCCCCCccc
Q 000809 1218 DGMCCICYASEAD---AQFVPCSH------RSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1218 e~~CpIC~~~~~d---pV~lPCgH------~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
...|.||++...+ .|.++||. .||.+|+.+|-...+++||.|..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccce
Confidence 3469999998777 57789985 58999999998778899999985
No 84
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=89.98 E-value=0.096 Score=59.72 Aligned_cols=35 Identities=23% Similarity=0.640 Sum_probs=29.0
Q ss_pred EEecCCCccchHHHHHhhcCCCCCCCCcccccccccc
Q 000809 1232 QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVKV 1268 (1273)
Q Consensus 1232 V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~~~ 1268 (1273)
-.+||+|+||..|.+.+- ++.||.|-.+|.+|..+
T Consensus 105 RmIPCkHvFCl~CAr~~~--dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 105 RMIPCKHVFCLECARSDS--DKICPLCDDRVQRIEQI 139 (389)
T ss_pred cccccchhhhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence 458999999999998544 78999999998877543
No 85
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.97 E-value=0.34 Score=57.47 Aligned_cols=42 Identities=33% Similarity=0.859 Sum_probs=31.9
Q ss_pred CccCccccccccC---cEEecCCCccchHHHHHhhc--------CCCCCCCCc
Q 000809 1218 DGMCCICYASEAD---AQFVPCSHRSCHGCISRHLL--------NCLRCFFCN 1259 (1273)
Q Consensus 1218 e~~CpIC~~~~~d---pV~lPCgH~~C~~CI~~~l~--------~~~~CP~CR 1259 (1273)
-+.|.||++...- -+++||+|+||++|...... +.-+||-|.
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~ 236 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPK 236 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCC
Confidence 4789999987544 57899999999999987632 233677654
No 86
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=88.85 E-value=0.22 Score=57.34 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=34.8
Q ss_pred CCCccCccccccc--cCcEEe--cCCCccchHHHHHhhcC-CCCCCCCcccccc
Q 000809 1216 ADDGMCCICYASE--ADAQFV--PCSHRSCHGCISRHLLN-CLRCFFCNATVLE 1264 (1273)
Q Consensus 1216 ~de~~CpIC~~~~--~dpV~l--PCgH~~C~~CI~~~l~~-~~~CP~CR~~i~~ 1264 (1273)
++|+.||+|++.| +|--|. |||-..|+=|-..+..+ +.+||-||..+++
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccc
Confidence 4566699999875 454554 57887777776554433 5799999998765
No 87
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.73 E-value=0.28 Score=58.08 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=35.0
Q ss_pred ccCccccccccC---cEEecCCCccchHHHHHhhcCC---CCCCCCccc
Q 000809 1219 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLLNC---LRCFFCNAT 1261 (1273)
Q Consensus 1219 ~~CpIC~~~~~d---pV~lPCgH~~C~~CI~~~l~~~---~~CP~CR~~ 1261 (1273)
|.|||--+.-.| |+.|.|||+.|+.-+.+...+. -+||+|-.-
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e 383 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVE 383 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcc
Confidence 689998876444 7999999999999999987663 489999653
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=87.60 E-value=0.33 Score=56.37 Aligned_cols=47 Identities=19% Similarity=0.465 Sum_probs=37.4
Q ss_pred CCccCccccccccCcEEe-cCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1217 DDGMCCICYASEADAQFV-PCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~l-PCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
+=..||||+..+.-|++- +=||..|.+|-.+. ...||+||-+|..+.
T Consensus 47 ~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~---~~~CP~Cr~~~g~~R 94 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV---SNKCPTCRLPIGNIR 94 (299)
T ss_pred hhccCchhhccCcccceecCCCcEehhhhhhhh---cccCCccccccccHH
Confidence 346799999999999642 44899999997643 368999999998764
No 89
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.22 E-value=0.38 Score=59.43 Aligned_cols=39 Identities=23% Similarity=0.542 Sum_probs=30.2
Q ss_pred ccCcccccc----ccCcEEecCCCccchHHHHHhhcCCCCCCCCcc
Q 000809 1219 GMCCICYAS----EADAQFVPCSHRSCHGCISRHLLNCLRCFFCNA 1260 (1273)
Q Consensus 1219 ~~CpIC~~~----~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~ 1260 (1273)
..|+||... -..||++-|||+.|+.|... +.+.+|| |..
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~--lyn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQL--LYNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHh--HhhccCC-CCc
Confidence 469999654 45689999999999999984 4467888 543
No 90
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=0.8 Score=52.77 Aligned_cols=34 Identities=32% Similarity=0.706 Sum_probs=28.8
Q ss_pred cCcEEecCCCccchHHHHHhhcC-CCCCCCCcccc
Q 000809 1229 ADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATV 1262 (1273)
Q Consensus 1229 ~dpV~lPCgH~~C~~CI~~~l~~-~~~CP~CR~~i 1262 (1273)
.-|-.|.|||++|..|+..++.+ ...|||||.+.
T Consensus 20 ~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 20 HIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred cCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 44667779999999999999876 45799999995
No 91
>PF13765 PRY: SPRY-associated domain; PDB: 3KB5_A 2VOK_A 2VOL_B 2FBE_B 2WL1_A 2IWG_E.
Probab=80.65 E-value=1.5 Score=37.41 Aligned_cols=23 Identities=9% Similarity=0.047 Sum_probs=18.5
Q ss_pred EEeCcccCCCCeEEeCCCcEEEe
Q 000809 109 VGLEESSICGDVRIAKLPLLVES 131 (1273)
Q Consensus 109 V~LD~~~~~~~l~LS~d~L~v~~ 131 (1273)
|+||+.++++.+.||+|+.+|..
T Consensus 1 ltlDp~TAh~~L~lS~d~k~v~~ 23 (49)
T PF13765_consen 1 LTLDPNTAHPSLVLSEDGKSVRY 23 (49)
T ss_dssp -EB-TTTS-TTEEEETTSSEEEE
T ss_pred CEECcccCCCCeEECCCCeEEEE
Confidence 57999999999999999999964
No 92
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=78.57 E-value=2.4 Score=40.99 Aligned_cols=34 Identities=26% Similarity=0.647 Sum_probs=27.6
Q ss_pred CCCCCccCccccccccCcEE--ecCCCccchHHHHH
Q 000809 1214 TDADDGMCCICYASEADAQF--VPCSHRSCHGCISR 1247 (1273)
Q Consensus 1214 ~~~de~~CpIC~~~~~dpV~--lPCgH~~C~~CI~~ 1247 (1273)
.++++..|++|.....+.++ .||||++..+|++|
T Consensus 74 ~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~r 109 (109)
T PF10367_consen 74 VITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIKR 109 (109)
T ss_pred EECCCCCccCcCCcCCCceEEEeCCCeEEecccccC
Confidence 34677889999998877654 69999999999863
No 93
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.81 E-value=1.8 Score=48.65 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=43.2
Q ss_pred CCccCccccccccCc----EEecCCCccchHHHHHhhcCCCCCCCCccc--ccccccccccCC
Q 000809 1217 DDGMCCICYASEADA----QFVPCSHRSCHGCISRHLLNCLRCFFCNAT--VLEVVKVDEKIE 1273 (1273)
Q Consensus 1217 de~~CpIC~~~~~dp----V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~--i~~v~~~~~~~~ 1273 (1273)
..|+|||--=.|.+. ++-+|||+|-..-+.+.- ...|+.|.++ -++|+.++|..|
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~E 170 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTEE 170 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeEeeCCCHH
Confidence 368999987666664 677999999887777665 4689999999 567888888654
No 94
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=75.29 E-value=1.6 Score=58.03 Aligned_cols=50 Identities=32% Similarity=0.643 Sum_probs=38.3
Q ss_pred CCccCcccccc--ccCc-EEecCCCccchHHHHHhhcCC----------CCCCCCcccccccc
Q 000809 1217 DDGMCCICYAS--EADA-QFVPCSHRSCHGCISRHLLNC----------LRCFFCNATVLEVV 1266 (1273)
Q Consensus 1217 de~~CpIC~~~--~~dp-V~lPCgH~~C~~CI~~~l~~~----------~~CP~CR~~i~~v~ 1266 (1273)
.|+.|-||++. -..| +-|.|+|+|--.|.++.+.+. -.||+|..+|+.++
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 46789999975 3334 558999999888888887641 26999999987653
No 95
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.61 E-value=4.9 Score=48.03 Aligned_cols=73 Identities=19% Similarity=0.455 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCC-CCCCCccCccccccccCcEEe-----------------cCCCcc-----chHHH
Q 000809 1189 LECFLSLVLCHIEAQEMERTRCGRE-TDADDGMCCICYASEADAQFV-----------------PCSHRS-----CHGCI 1245 (1273)
Q Consensus 1189 l~~f~~~l~~~~~~~e~e~~~~~~~-~~~de~~CpIC~~~~~dpV~l-----------------PCgH~~-----C~~CI 1245 (1273)
.++|++.++++..+...= ... ..++.+.|--|+....|..+. +|+.-+ |-+|+
T Consensus 245 ~drF~e~F~~~V~~Np~y----~~~~~~~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm 320 (358)
T PF10272_consen 245 SDRFVEAFKEQVEQNPRY----SYPESGQELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECM 320 (358)
T ss_pred HHHHHHHHHHHHHhCCcc----ccCCCccccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHH
Confidence 455666666554442211 112 224567788898877776554 344433 66999
Q ss_pred HHhhc-------------CCCCCCCCccc--cccc
Q 000809 1246 SRHLL-------------NCLRCFFCNAT--VLEV 1265 (1273)
Q Consensus 1246 ~~~l~-------------~~~~CP~CR~~--i~~v 1265 (1273)
.+|.. ++-.||.||++ |-||
T Consensus 321 ~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 321 GKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred HHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 98844 34489999998 4444
No 96
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=73.58 E-value=6.8 Score=40.52 Aligned_cols=50 Identities=20% Similarity=0.461 Sum_probs=41.9
Q ss_pred CCccCccccccccCcEEec----CCCccchHHHHHhhcC---CCCCCCCcccccccc
Q 000809 1217 DDGMCCICYASEADAQFVP----CSHRSCHGCISRHLLN---CLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~lP----CgH~~C~~CI~~~l~~---~~~CP~CR~~i~~v~ 1266 (1273)
.-..|.||.+.-.|.-||. ||=..|..|-...|.. -+.||.|++......
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4568999999999999884 9999999999888765 568999999876543
No 97
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=72.92 E-value=1.1 Score=49.97 Aligned_cols=46 Identities=26% Similarity=0.703 Sum_probs=33.9
Q ss_pred CCCccCccccc-cccCc--EEe--c-CCCccchHHHHHhhcCC-CCCC--CCccc
Q 000809 1216 ADDGMCCICYA-SEADA--QFV--P-CSHRSCHGCISRHLLNC-LRCF--FCNAT 1261 (1273)
Q Consensus 1216 ~de~~CpIC~~-~~~dp--V~l--P-CgH~~C~~CI~~~l~~~-~~CP--~CR~~ 1261 (1273)
..+..||||.+ ..-+| +++ | |=|.+|.+|..+..... ..|| -|..-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHH
Confidence 34568999985 44444 333 6 99999999999998664 4799 67653
No 98
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.20 E-value=1.1 Score=56.93 Aligned_cols=46 Identities=17% Similarity=0.483 Sum_probs=39.1
Q ss_pred ccCccccccccCcEEecCCCccchHHHHHhhcC---CCCCCCCcccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHRSCHGCISRHLLN---CLRCFFCNATVLE 1264 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~---~~~CP~CR~~i~~ 1264 (1273)
..||||.....+|+.+.|-|.||+.|+...+.. ...||+|+..++.
T Consensus 22 lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 22 LECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred ccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 359999999999999999999999998876544 5589999977654
No 99
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.37 E-value=2.5 Score=49.45 Aligned_cols=48 Identities=29% Similarity=0.524 Sum_probs=38.3
Q ss_pred ccCccccccc--cCcEEe--cCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1219 GMCCICYASE--ADAQFV--PCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1219 ~~CpIC~~~~--~dpV~l--PCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
..||||++.+ .|--++ |||+..|.-|......++..||.||.++..-.
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccccCc
Confidence 5799999865 444455 58888899999988889999999998866543
No 100
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=69.95 E-value=1.8 Score=40.56 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=31.0
Q ss_pred ccCccccccccC-cE-EecCCCccchHHHHHhhcC---CCCCCCCccccc
Q 000809 1219 GMCCICYASEAD-AQ-FVPCSHRSCHGCISRHLLN---CLRCFFCNATVL 1263 (1273)
Q Consensus 1219 ~~CpIC~~~~~d-pV-~lPCgH~~C~~CI~~~l~~---~~~CP~CR~~i~ 1263 (1273)
..||-|--.--| |. .=-|.|.|-..||.+++.. ...||+||+...
T Consensus 32 g~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 32 GCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 445555533233 22 2369999999999999864 457999999743
No 101
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.43 E-value=4.2 Score=48.23 Aligned_cols=46 Identities=28% Similarity=0.454 Sum_probs=36.3
Q ss_pred ccCcccccc----ccCcEEecCCCccchHHHHHhhcC--CCCCCCCcccccc
Q 000809 1219 GMCCICYAS----EADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNATVLE 1264 (1273)
Q Consensus 1219 ~~CpIC~~~----~~dpV~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~i~~ 1264 (1273)
.-|..|.+. ...---|||.|+|--.|...++++ .++||-||.-+..
T Consensus 366 L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~CrklrSs 417 (518)
T KOG1941|consen 366 LYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLRSS 417 (518)
T ss_pred hhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHHhh
Confidence 459999875 334456999999999999999876 5689999965553
No 102
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=66.49 E-value=3.2 Score=41.02 Aligned_cols=28 Identities=32% Similarity=0.402 Sum_probs=25.8
Q ss_pred ecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1234 VPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1234 lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
=-|.|.|-..||.+|+.+...||.|.+.
T Consensus 79 G~CNHaFH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 79 GVCNHAFHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eecchHHHHHHHHHHHhhcCcCCCcCcc
Confidence 3699999999999999999999999876
No 103
>smart00588 NEUZ domain in neuralized proteins.
Probab=63.51 E-value=1.1e+02 Score=31.43 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=57.6
Q ss_pred CCCCeEEeCCCcEEEeeCc-e--eeEEeCceeecC-EEEEEEEEEe-----cCeEEEEEecCCCC-CCC-------CCCc
Q 000809 116 ICGDVRIAKLPLLVESLAM-F--SSARANVCVWKG-KWMYEVTLET-----SGVQQLGWATLSCP-FTD-------HKGV 178 (1273)
Q Consensus 116 ~~~~l~LS~d~L~v~~~s~-~--~sVRAn~~V~sG-k~YFEV~I~s-----~G~irIG~at~~~~-l~~-------~~~v 178 (1273)
+-.++.|++++.++..... | +-|.++.++..| ++ +|+|.. .|.++||+++.+-. +.. .+.+
T Consensus 9 ~G~ni~l~~~~~~A~R~~~~f~~givFS~rPl~~~E~~--~v~i~~~~~~w~G~l~~G~Ts~dP~~l~~~~lp~~~~~dl 86 (123)
T smart00588 9 HGSNIRLSDSGRVARRSASDFCNALVFSARPLRINELF--EVKIEKVVRKWSGALRFGVTTCDPATLRPASLPTNACPDL 86 (123)
T ss_pred cCCCeEECCCCcEEEcccCCcCceEEecCCCCcCCCEE--EEEEEEecCCccCceEEEEecCCcccccCccCcccCcccc
Confidence 3468999999999977542 4 346678888755 44 555543 37999999887532 211 0111
Q ss_pred cCCCCceeEecCCcccccCCCccCCC-CCCCCCEEEEEEeCCCCeEEEEEC
Q 000809 179 GDADDSYAFDGRRVKKWNKEAEPYGQ-SWVAGDIIGCCIDLDSDEISFYRN 228 (1273)
Q Consensus 179 G~d~~Sygy~g~~g~~~h~~~~~YG~-~f~~GDVIGC~LDld~g~I~FtkN 228 (1273)
-.-...|... .+. ....||+++..++ ..|.+.|.+|
T Consensus 87 ~~~~g~wv~~-------------~~~~~~~~g~~l~f~~~-~~G~v~~~vn 123 (123)
T smart00588 87 VDMSGFWAKA-------------LGEGLAEQGGILGLDVL-AEGEVVGVIN 123 (123)
T ss_pred cccCCcceEE-------------CChhhccCCCEEEEEEC-CCceEEEEeC
Confidence 1122233222 122 2267888887776 4677777766
No 104
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=62.86 E-value=5.5 Score=46.19 Aligned_cols=50 Identities=8% Similarity=-0.108 Sum_probs=42.7
Q ss_pred ccCccccccccCcEEecCCCc-cchHHHHHhhcCCCCCCCCcccccccccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHR-SCHGCISRHLLNCLRCFFCNATVLEVVKVDE 1270 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~-~C~~CI~~~l~~~~~CP~CR~~i~~v~~~~~ 1270 (1273)
..|..|....-..+..||+|+ ||-+|.. +.-+++||.|.......++|.|
T Consensus 344 ~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i~g 394 (394)
T KOG2113|consen 344 LKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPING 394 (394)
T ss_pred cccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeecCC
Confidence 469999988888889999998 7999987 4447899999998888888876
No 105
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=62.73 E-value=6.1 Score=34.20 Aligned_cols=43 Identities=16% Similarity=0.358 Sum_probs=21.5
Q ss_pred ccCccccccccCcEE-ecCCCccch---HHHHHhhcC-CCCCCCCccc
Q 000809 1219 GMCCICYASEADAQF-VPCSHRSCH---GCISRHLLN-CLRCFFCNAT 1261 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~-lPCgH~~C~---~CI~~~l~~-~~~CP~CR~~ 1261 (1273)
..|||.+..++-||- ..|.|.-|. +=+...... .-.||+|++|
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 469999999999987 579998665 333333322 2379999875
No 106
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=61.04 E-value=4.3 Score=43.10 Aligned_cols=21 Identities=33% Similarity=0.698 Sum_probs=18.7
Q ss_pred CCccCccccccccCcEEecCC
Q 000809 1217 DDGMCCICYASEADAQFVPCS 1237 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~lPCg 1237 (1273)
|+-.||||++.+.++|+|-|+
T Consensus 1 ed~~CpICme~PHNAVLLlCS 21 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLCS 21 (162)
T ss_pred CCccCceeccCCCceEEEEec
Confidence 456899999999999999875
No 107
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.98 E-value=4.7 Score=45.35 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=31.0
Q ss_pred CCCccCccccccccCcEEecCCCccchHHHHHhhcC
Q 000809 1216 ADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN 1251 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~ 1251 (1273)
.+=+.|.+|+...+|||+.|=||.||+.||-+..+.
T Consensus 41 K~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred CCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 344579999999999999999999999999886543
No 108
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=60.56 E-value=2.5 Score=56.55 Aligned_cols=46 Identities=24% Similarity=0.569 Sum_probs=40.5
Q ss_pred CCCccCccccccccC-cEEecCCCccchHHHHHhhcCCCCCCCCccc
Q 000809 1216 ADDGMCCICYASEAD-AQFVPCSHRSCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d-pV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
.+...|+||.+.+++ --+.-|||-+|+.|+..++.....||.|...
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 456789999999994 5678899999999999999999999999864
No 109
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=60.36 E-value=5.1 Score=46.41 Aligned_cols=42 Identities=19% Similarity=0.406 Sum_probs=32.5
Q ss_pred ccCccccccccC---cEEecCCCccchHHHHHhhcC---CCCCCCCcc
Q 000809 1219 GMCCICYASEAD---AQFVPCSHRSCHGCISRHLLN---CLRCFFCNA 1260 (1273)
Q Consensus 1219 ~~CpIC~~~~~d---pV~lPCgH~~C~~CI~~~l~~---~~~CP~CR~ 1260 (1273)
|.||+--+.-++ |+.+.|||+.-..-+.+...+ ..+||+|-.
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~ 384 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE 384 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence 789998765443 799999999999888776554 347999953
No 110
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=56.41 E-value=6.3 Score=45.46 Aligned_cols=28 Identities=29% Similarity=0.736 Sum_probs=24.2
Q ss_pred cCCCccchHHHHHhhc-CCCCCCCCcccc
Q 000809 1235 PCSHRSCHGCISRHLL-NCLRCFFCNATV 1262 (1273)
Q Consensus 1235 PCgH~~C~~CI~~~l~-~~~~CP~CR~~i 1262 (1273)
||||..|.+|..+... +...||-|..++
T Consensus 22 ~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 22 ECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred cccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 8999999999999865 467899998874
No 111
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.38 E-value=8.3 Score=39.77 Aligned_cols=43 Identities=35% Similarity=0.678 Sum_probs=27.8
Q ss_pred CCCCccCcccc-ccccCcEEecCCCc-------cchHHHHHhhcC-CC---CCCCCccc
Q 000809 1215 DADDGMCCICY-ASEADAQFVPCSHR-------SCHGCISRHLLN-CL---RCFFCNAT 1261 (1273)
Q Consensus 1215 ~~de~~CpIC~-~~~~dpV~lPCgH~-------~C~~CI~~~l~~-~~---~CP~CR~~ 1261 (1273)
..|+-+|-||. +.+.|- |||+ ||..|-.+..+. ++ .|-.|+..
T Consensus 62 v~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 35788999998 567776 6776 334444444443 33 58888765
No 112
>PHA03096 p28-like protein; Provisional
Probab=56.03 E-value=4.8 Score=46.70 Aligned_cols=43 Identities=14% Similarity=0.090 Sum_probs=29.1
Q ss_pred ccCccccccccC--------cEEecCCCccchHHHHHhhcC---CCCCCCCccc
Q 000809 1219 GMCCICYASEAD--------AQFVPCSHRSCHGCISRHLLN---CLRCFFCNAT 1261 (1273)
Q Consensus 1219 ~~CpIC~~~~~d--------pV~lPCgH~~C~~CI~~~l~~---~~~CP~CR~~ 1261 (1273)
..|.||++...+ -++--|.|.||-.||+.|... ...||.||..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 569999986432 244469999999999988532 3345555443
No 113
>smart00589 PRY associated with SPRY domains.
Probab=54.07 E-value=14 Score=31.04 Aligned_cols=25 Identities=12% Similarity=-0.088 Sum_probs=21.8
Q ss_pred eEEeCcccCCCCeEEeCCCcEEEee
Q 000809 108 IVGLEESSICGDVRIAKLPLLVESL 132 (1273)
Q Consensus 108 ~V~LD~~~~~~~l~LS~d~L~v~~~ 132 (1273)
.|.||+.++++.+.||+|+..+...
T Consensus 3 ~vtld~~tA~~~l~lS~d~~~v~~~ 27 (52)
T smart00589 3 DVTLDPDTAHPYLLLSEDRRSVRYG 27 (52)
T ss_pred CCEECcccCCCCeEECCCCCEEEEC
Confidence 5789999999999999999888643
No 114
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.49 E-value=15 Score=41.82 Aligned_cols=53 Identities=13% Similarity=-0.073 Sum_probs=46.2
Q ss_pred CCCCCCccCccccccccCcEEecCCCccchHHHHHhhcC-CCCCCCCccccccc
Q 000809 1213 ETDADDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN-CLRCFFCNATVLEV 1265 (1273)
Q Consensus 1213 ~~~~de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~-~~~CP~CR~~i~~v 1265 (1273)
.+.+|-..|.|-.++|++||+.|.|-+.-+.=|..|+.. -.-+|..|.+++.-
T Consensus 206 rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~ 259 (284)
T KOG4642|consen 206 REVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEY 259 (284)
T ss_pred ccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHH
Confidence 455777888999999999999999999999999999987 45799999998753
No 115
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=53.10 E-value=11 Score=43.79 Aligned_cols=48 Identities=21% Similarity=0.451 Sum_probs=32.7
Q ss_pred CCccCcccccc--------------ccC-----cEEecCCCccchHHHHHhhcC---------CCCCCCCcccccc
Q 000809 1217 DDGMCCICYAS--------------EAD-----AQFVPCSHRSCHGCISRHLLN---------CLRCFFCNATVLE 1264 (1273)
Q Consensus 1217 de~~CpIC~~~--------------~~d-----pV~lPCgH~~C~~CI~~~l~~---------~~~CP~CR~~i~~ 1264 (1273)
.+-.||+|... ..| -.|-||||++-..+..-|..- ...||||-+.+..
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45679999763 112 267899999777777665321 4579999987653
No 116
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.46 E-value=16 Score=47.47 Aligned_cols=47 Identities=17% Similarity=0.326 Sum_probs=36.7
Q ss_pred CccCccccccccCc-EEecCCCccchHHHHHhhcCCCCCCCCccccccccc
Q 000809 1218 DGMCCICYASEADA-QFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1218 e~~CpIC~~~~~dp-V~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~~ 1267 (1273)
...|..|-....=| |..-|||.+-..|.. .+...||-|+.....+.+
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~~~~m~ 887 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPELRGVMD 887 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhhhhhHH
Confidence 35799998777766 567999999999987 456799999986555543
No 117
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=51.48 E-value=14 Score=39.51 Aligned_cols=50 Identities=18% Similarity=0.323 Sum_probs=35.5
Q ss_pred CCCCccCccccccccCcEEecCCCc----c-chHHHHHhhcC--CCCCCCCccccccc
Q 000809 1215 DADDGMCCICYASEADAQFVPCSHR----S-CHGCISRHLLN--CLRCFFCNATVLEV 1265 (1273)
Q Consensus 1215 ~~de~~CpIC~~~~~dpV~lPCgH~----~-C~~CI~~~l~~--~~~CP~CR~~i~~v 1265 (1273)
...+..|-||.+-.. +..-||.=. + -.+|+.+|+.. ...|+.|++++.-+
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 346778999998754 344676432 2 44999999875 45899999996433
No 118
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=7.5 Score=46.31 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=22.2
Q ss_pred cCCCccchHHHHHhhcCC---CCCCCCc
Q 000809 1235 PCSHRSCHGCISRHLLNC---LRCFFCN 1259 (1273)
Q Consensus 1235 PCgH~~C~~CI~~~l~~~---~~CP~CR 1259 (1273)
.|||+|--.|+.+|...+ .+||+|+
T Consensus 25 ~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 25 TCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred chhhHHHHHHHHHHHccCCccCCCCcee
Confidence 499999999999998763 5899999
No 119
>PHA02862 5L protein; Provisional
Probab=51.00 E-value=12 Score=39.26 Aligned_cols=44 Identities=16% Similarity=0.345 Sum_probs=32.8
Q ss_pred ccCccccccccCcEEecCCCc----c-chHHHHHhhcC--CCCCCCCccccc
Q 000809 1219 GMCCICYASEADAQFVPCSHR----S-CHGCISRHLLN--CLRCFFCNATVL 1263 (1273)
Q Consensus 1219 ~~CpIC~~~~~dpV~lPCgH~----~-C~~CI~~~l~~--~~~CP~CR~~i~ 1263 (1273)
..|.||.+.-.+. .-||.=. + -++|+.+|+.. +..||.|+.++.
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4699999876555 4787542 2 45999999865 458999999853
No 120
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.62 E-value=27 Score=45.86 Aligned_cols=35 Identities=26% Similarity=0.543 Sum_probs=26.8
Q ss_pred CCCccCcccccc-ccCc-EEecCCCccchHHHHHhhc
Q 000809 1216 ADDGMCCICYAS-EADA-QFVPCSHRSCHGCISRHLL 1250 (1273)
Q Consensus 1216 ~de~~CpIC~~~-~~dp-V~lPCgH~~C~~CI~~~l~ 1250 (1273)
.-...|-+|.-. ...| +..||||.|-++|+.+|..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~ 851 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVL 851 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHHH
Confidence 456789999853 3334 5579999999999999853
No 121
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=49.09 E-value=6.4 Score=45.45 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=34.4
Q ss_pred CccCcccccccc------CcEEec--------CCCccchHHHHHhhcC-CCCCCCCccc
Q 000809 1218 DGMCCICYASEA------DAQFVP--------CSHRSCHGCISRHLLN-CLRCFFCNAT 1261 (1273)
Q Consensus 1218 e~~CpIC~~~~~------dpV~lP--------CgH~~C~~CI~~~l~~-~~~CP~CR~~ 1261 (1273)
+.+|.||..... -|-++. |||..|..|+...+.. ...||||+..
T Consensus 207 ~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 207 EKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCcccce
Confidence 456999987655 245566 9999999999998765 4689999975
No 122
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=48.82 E-value=8.5 Score=49.23 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=38.1
Q ss_pred CCCccCccccccccCc----EEec---CCCccchHHHHHhhcC------CCCCCCCccccccccc
Q 000809 1216 ADDGMCCICYASEADA----QFVP---CSHRSCHGCISRHLLN------CLRCFFCNATVLEVVK 1267 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~dp----V~lP---CgH~~C~~CI~~~l~~------~~~CP~CR~~i~~v~~ 1267 (1273)
.+...|++|-....++ =+.| |+|.+|..||..+... .-.|+||..-|....+
T Consensus 94 a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 94 AESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred ccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 3456788888777773 3466 9999999999998653 2269999987665543
No 123
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=47.42 E-value=68 Score=29.71 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCCCeEEeCCCcEEEeeC--ceeeEEeCceeecCEEEEEEEEEe-----cCeEEEEEecC
Q 000809 116 ICGDVRIAKLPLLVESLA--MFSSARANVCVWKGKWMYEVTLET-----SGVQQLGWATL 168 (1273)
Q Consensus 116 ~~~~l~LS~d~L~v~~~s--~~~sVRAn~~V~sGk~YFEV~I~s-----~G~irIG~at~ 168 (1273)
+..++.|++|+.++.... .-+-|.++.++..|. .|+|+|.. .|.++||+++.
T Consensus 9 ~G~nV~L~~~~~~A~R~~sf~~giVFS~rPl~~~E-~~~v~I~~~~~~wsG~L~~GvT~~ 67 (69)
T PF07177_consen 9 HGKNVRLSNDGTVARRVSSFNNGIVFSSRPLRIGE-KFEVRIDEVEPSWSGSLRIGVTSC 67 (69)
T ss_dssp E-TTEEE-SSS-EEEEST-SSS-EEEESS-B-TT--EEEEEEEEE-SSSSS--EEEEESS
T ss_pred cCCCEEEcCCCeEEEecccCCceEEEecCCccCCC-EEEEEEEecCCCceeEEEEeeEcc
Confidence 456899999999998755 335677888887652 34555544 37899999875
No 124
>PLN02189 cellulose synthase
Probab=46.67 E-value=15 Score=48.99 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=35.1
Q ss_pred CccCcccccc----ccCcEEecCCC---ccchHHHHHhhc-CCCCCCCCcccccccc
Q 000809 1218 DGMCCICYAS----EADAQFVPCSH---RSCHGCISRHLL-NCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1218 e~~CpIC~~~----~~dpV~lPCgH---~~C~~CI~~~l~-~~~~CP~CR~~i~~v~ 1266 (1273)
...|.||.+. ...-++..|.- -.|+.|..--.. .++.||-|++++.+..
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~k 90 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLK 90 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 4589999986 22335666554 479999965443 3789999999988543
No 125
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=43.90 E-value=9 Score=43.97 Aligned_cols=33 Identities=30% Similarity=0.713 Sum_probs=28.4
Q ss_pred CccCccccccccCcEEecC----CCccchHHHHHhhc
Q 000809 1218 DGMCCICYASEADAQFVPC----SHRSCHGCISRHLL 1250 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPC----gH~~C~~CI~~~l~ 1250 (1273)
-..|.+|.+..+|.-|..| +|.||.-|-++...
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK 304 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIK 304 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHH
Confidence 4679999999999999988 78999999887654
No 126
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=41.84 E-value=12 Score=43.25 Aligned_cols=47 Identities=21% Similarity=0.411 Sum_probs=37.3
Q ss_pred ccCcccccc----ccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1219 GMCCICYAS----EADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1219 ~~CpIC~~~----~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
.-||||... +.+|..++|||..=..|........-+||.|.. +.+..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHHH
Confidence 349999864 567788999999878888887666689999999 55543
No 127
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=41.25 E-value=12 Score=45.22 Aligned_cols=33 Identities=27% Similarity=0.817 Sum_probs=24.4
Q ss_pred CccCcccc-ccccC---cEEecCCCccchHHHHHhhc
Q 000809 1218 DGMCCICY-ASEAD---AQFVPCSHRSCHGCISRHLL 1250 (1273)
Q Consensus 1218 e~~CpIC~-~~~~d---pV~lPCgH~~C~~CI~~~l~ 1250 (1273)
...|.||+ +.+.. .-..-|+|.||..|.++|..
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~ie 182 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIE 182 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhh
Confidence 56799999 33222 12356999999999999965
No 128
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=37.45 E-value=16 Score=31.70 Aligned_cols=32 Identities=28% Similarity=0.680 Sum_probs=22.3
Q ss_pred EecCC-CccchHHHHHhhcCCCCCCCCcccccc
Q 000809 1233 FVPCS-HRSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1233 ~lPCg-H~~C~~CI~~~l~~~~~CP~CR~~i~~ 1264 (1273)
++.|+ |-.|-.|+...+..+..||+|..++-.
T Consensus 15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 44554 667999999999889999999998643
No 129
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=37.14 E-value=19 Score=44.40 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=30.8
Q ss_pred CCCccCccccccccC-cEEecCCCccchHHHHHhhcC
Q 000809 1216 ADDGMCCICYASEAD-AQFVPCSHRSCHGCISRHLLN 1251 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d-pV~lPCgH~~C~~CI~~~l~~ 1251 (1273)
..+..|.||.+...+ .+.++|||.||..|+..++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 446789999988875 788999999999999998764
No 130
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=36.20 E-value=34 Score=32.54 Aligned_cols=50 Identities=20% Similarity=0.420 Sum_probs=21.2
Q ss_pred CCccCccccccc----cCcEEecCCC---ccchHHHHHhh-cCCCCCCCCcccccccc
Q 000809 1217 DDGMCCICYASE----ADAQFVPCSH---RSCHGCISRHL-LNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1217 de~~CpIC~~~~----~dpV~lPCgH---~~C~~CI~~~l-~~~~~CP~CR~~i~~v~ 1266 (1273)
+...|.||-+.. .--+|.-|.. -.|+.|..--. ...+.||-|++++++..
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~k 65 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHK 65 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----T
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccccc
Confidence 346799998753 2236666554 46999987654 34789999999987653
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=33.06 E-value=13 Score=43.07 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=23.7
Q ss_pred CccCccccccccCcEEecC---CCc--cchHHHHHhhcCCCCCCCCccc
Q 000809 1218 DGMCCICYASEADAQFVPC---SHR--SCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPC---gH~--~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
...||+|.+.+.=.++..= |+. +|.-|-.+|...--.||+|...
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 4799999999888887765 555 5999999987777799999875
No 132
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=32.04 E-value=14 Score=42.90 Aligned_cols=47 Identities=26% Similarity=0.565 Sum_probs=34.0
Q ss_pred CccCccccccccC-c--EEecCCCccchHHHHHhhcC-----------------------CCCCCCCcccccc
Q 000809 1218 DGMCCICYASEAD-A--QFVPCSHRSCHGCISRHLLN-----------------------CLRCFFCNATVLE 1264 (1273)
Q Consensus 1218 e~~CpIC~~~~~d-p--V~lPCgH~~C~~CI~~~l~~-----------------------~~~CP~CR~~i~~ 1264 (1273)
...|.||+=-+.+ + +.++|-|-+-..|..+|+.. ...||+||.+|..
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 4568888755444 3 44799999999999998531 1259999998753
No 133
>PLN02436 cellulose synthase A
Probab=30.65 E-value=39 Score=45.58 Aligned_cols=49 Identities=22% Similarity=0.484 Sum_probs=34.5
Q ss_pred CccCccccccc---cC-cEEecCCC---ccchHHHHHhhc-CCCCCCCCcccccccc
Q 000809 1218 DGMCCICYASE---AD-AQFVPCSH---RSCHGCISRHLL-NCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1218 e~~CpIC~~~~---~d-pV~lPCgH---~~C~~CI~~~l~-~~~~CP~CR~~i~~v~ 1266 (1273)
...|.||.+.. .| -+|..|.. -.|+.|..--.. .++.||-|++++.+..
T Consensus 36 ~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~k 92 (1094)
T PLN02436 36 GQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIK 92 (1094)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhcc
Confidence 45899999752 11 25666554 479999965443 3789999999988553
No 134
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=26.95 E-value=30 Score=30.16 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=27.2
Q ss_pred CCccCccccccccCcEEecCCCccchHHHHHhhcC--CCCCCCCccccc
Q 000809 1217 DDGMCCICYASEADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNATVL 1263 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~i~ 1263 (1273)
|.+.||.|.. --+. ...+.-|...|... .-.||+|.+.+.
T Consensus 1 ~~f~CP~C~~-~~~~------~~L~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 1 DSFTCPYCGK-GFSE------SSLVEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred CCcCCCCCCC-ccCH------HHHHHHHHhHCcCCCCCccCCCchhhhh
Confidence 4588999998 3332 23567788888754 347999987544
No 135
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.66 E-value=38 Score=40.99 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=27.1
Q ss_pred cCcEEecCCCccchHHHHHhhcC--CCCCCCCccc
Q 000809 1229 ADAQFVPCSHRSCHGCISRHLLN--CLRCFFCNAT 1261 (1273)
Q Consensus 1229 ~dpV~lPCgH~~C~~CI~~~l~~--~~~CP~CR~~ 1261 (1273)
.--|.+.|||-|=.+||++|+-. ...||.|...
T Consensus 20 hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 20 HRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred eEEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence 33578999999999999999852 4579999875
No 136
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.52 E-value=42 Score=36.39 Aligned_cols=46 Identities=26% Similarity=0.634 Sum_probs=34.0
Q ss_pred ccCccccccccCc-----EE--ecCCCccchHHHHHhhcC-----------CCCCCCCcccccc
Q 000809 1219 GMCCICYASEADA-----QF--VPCSHRSCHGCISRHLLN-----------CLRCFFCNATVLE 1264 (1273)
Q Consensus 1219 ~~CpIC~~~~~dp-----V~--lPCgH~~C~~CI~~~l~~-----------~~~CP~CR~~i~~ 1264 (1273)
..|-|||...-|- +. ..||..|-.-|+..||.+ -..||+|-.||.-
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4599999865443 32 468888888999998753 1279999999863
No 137
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=25.65 E-value=16 Score=34.06 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=24.8
Q ss_pred CccCccccccccCcEEecCCCccchHHHHHhhcCCCCCCCCcccccccc
Q 000809 1218 DGMCCICYASEADAQFVPCSHRSCHGCISRHLLNCLRCFFCNATVLEVV 1266 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lPCgH~~C~~CI~~~l~~~~~CP~CR~~i~~v~ 1266 (1273)
|..||.|...+. ..-||-.|..|-.... -...||-|.++++...
T Consensus 1 e~~CP~C~~~L~----~~~~~~~C~~C~~~~~-~~a~CPdC~~~Le~Lk 44 (70)
T PF07191_consen 1 ENTCPKCQQELE----WQGGHYHCEACQKDYK-KEAFCPDCGQPLEVLK 44 (70)
T ss_dssp --B-SSS-SBEE----EETTEEEETTT--EEE-EEEE-TTT-SB-EEEE
T ss_pred CCcCCCCCCccE----EeCCEEECccccccce-ecccCCCcccHHHHHH
Confidence 357999997532 2237888999977543 2468999999998764
No 138
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=25.13 E-value=43 Score=43.47 Aligned_cols=48 Identities=23% Similarity=0.511 Sum_probs=37.6
Q ss_pred CCCccCccccc--cccCcEEecCCCc-----cchHHHHHhhcC--CCCCCCCccccc
Q 000809 1216 ADDGMCCICYA--SEADAQFVPCSHR-----SCHGCISRHLLN--CLRCFFCNATVL 1263 (1273)
Q Consensus 1216 ~de~~CpIC~~--~~~dpV~lPCgH~-----~C~~CI~~~l~~--~~~CP~CR~~i~ 1263 (1273)
.|+..|-||-+ ..-||.+-||+-. .-++|...|+.. +.+|-.|..+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 35578999984 6788999998764 244999999875 568999999864
No 139
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=23.90 E-value=59 Score=44.00 Aligned_cols=48 Identities=21% Similarity=0.443 Sum_probs=33.1
Q ss_pred CccCccccccccC----cEEecCCC---ccchHHHHHhh-cCCCCCCCCccccccc
Q 000809 1218 DGMCCICYASEAD----AQFVPCSH---RSCHGCISRHL-LNCLRCFFCNATVLEV 1265 (1273)
Q Consensus 1218 e~~CpIC~~~~~d----pV~lPCgH---~~C~~CI~~~l-~~~~~CP~CR~~i~~v 1265 (1273)
...|.||-+..-- -+|.-|.. -.|+.|..=-. ..++.||-|++++.+.
T Consensus 17 ~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 17 GQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhh
Confidence 4589999975211 14565555 47999985433 3478999999998744
No 140
>PLN02400 cellulose synthase
Probab=23.22 E-value=52 Score=44.53 Aligned_cols=53 Identities=21% Similarity=0.423 Sum_probs=35.2
Q ss_pred CccCccccccccC----cEEecCCC---ccchHHHHHhh-cCCCCCCCCcccccccc---cccc
Q 000809 1218 DGMCCICYASEAD----AQFVPCSH---RSCHGCISRHL-LNCLRCFFCNATVLEVV---KVDE 1270 (1273)
Q Consensus 1218 e~~CpIC~~~~~d----pV~lPCgH---~~C~~CI~~~l-~~~~~CP~CR~~i~~v~---~~~~ 1270 (1273)
...|.||-+..-- -+|.-|.. -.|+.|-.--. ..++.||-|++.+.+.. +|+|
T Consensus 36 gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~G 99 (1085)
T PLN02400 36 GQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEG 99 (1085)
T ss_pred CceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCc
Confidence 4589999975211 24565555 47999985332 34789999999987543 4544
No 141
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=22.92 E-value=40 Score=39.86 Aligned_cols=45 Identities=18% Similarity=0.424 Sum_probs=35.1
Q ss_pred CCccCccccccccCcEEe---cCCCc--cchHHHHHhhcCCCCCCCCccc
Q 000809 1217 DDGMCCICYASEADAQFV---PCSHR--SCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1217 de~~CpIC~~~~~dpV~l---PCgH~--~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
....||+|.+.+.-.|+. .=|+. .|.-|-..|-..--.||+|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 467899999998766543 34555 5889999998878899999874
No 142
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=22.35 E-value=49 Score=39.14 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=11.2
Q ss_pred CCCccCccccccccC
Q 000809 1216 ADDGMCCICYASEAD 1230 (1273)
Q Consensus 1216 ~de~~CpIC~~~~~d 1230 (1273)
..+.+||+|.+....
T Consensus 13 dl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSG 27 (475)
T ss_pred ccccccccccCcccc
Confidence 456789999986554
No 143
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=22.27 E-value=30 Score=40.81 Aligned_cols=44 Identities=18% Similarity=0.452 Sum_probs=34.3
Q ss_pred CccCccccccccCcEEec----CCCc--cchHHHHHhhcCCCCCCCCccc
Q 000809 1218 DGMCCICYASEADAQFVP----CSHR--SCHGCISRHLLNCLRCFFCNAT 1261 (1273)
Q Consensus 1218 e~~CpIC~~~~~dpV~lP----CgH~--~C~~CI~~~l~~~~~CP~CR~~ 1261 (1273)
...||+|.+.+.-.++.. =|+. .|.-|-..|-..--+||+|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 458999999886655433 4554 5889999998877899999875
No 144
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=21.94 E-value=9.2e+02 Score=25.18 Aligned_cols=82 Identities=20% Similarity=0.189 Sum_probs=57.8
Q ss_pred hhhhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHhhHHHHHHH
Q 000809 746 AATLKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE-----RACSEQLKRLKEARNNYREEVIDC 820 (1273)
Q Consensus 746 ~~~~~~~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~l~~-----~~~~~~~~~l~~~~~~~~e~l~~~ 820 (1273)
.....+.+-|+.+|-=||=+..+.+...+...+.+.++...+.++++.|.. ....+-+++|-... .-.++|++.
T Consensus 47 ~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~~L~~ak~~L~~~~~eL~~L~~~s-~~~~~mi~i 125 (142)
T PF04048_consen 47 ELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKESLQEAKSLLGCRREELKELWQRS-QEYKEMIEI 125 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHHHHHH
Confidence 444667799999999999999999999999999999999999999988854 22234444444322 223445555
Q ss_pred HHHHHHHH
Q 000809 821 VRHCAWYR 828 (1273)
Q Consensus 821 ~r~~~w~~ 828 (1273)
--.+..++
T Consensus 126 L~~Ie~l~ 133 (142)
T PF04048_consen 126 LDQIEELR 133 (142)
T ss_pred HHHHHHHH
Confidence 44444433
Done!