Query 000809
Match_columns 1273
No_of_seqs 378 out of 1813
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 17:36:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000809.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_577-581//hhsearch_pdb/000809hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m62_A Ubiquitin conjugation f 1.0 1 1 667.1 44.4 476 749-1264 387-938 (968)
2 3toj_A SET1/ASH2 histone methy 1.0 1 1 301.8 14.6 191 104-305 8-212 (213)
3 2yyo_A SPRY domain-containing 1.0 1 1 259.1 15.4 156 113-275 4-171 (171)
4 3emw_A SPRY domain-containing 1.0 1 1 199.6 16.8 155 106-264 41-214 (217)
5 2jk9_A SPRY domain-containing 1.0 1 1 194.1 16.8 156 106-265 30-206 (212)
6 2afj_A Gene rich cluster, C9 g 1.0 1 1 189.0 11.1 157 106-266 38-213 (226)
7 2vok_A 52 kDa RO protein; poly 1.0 1 1 121.8 14.2 147 106-256 8-171 (188)
8 2wl1_A Pyrin, marenostrin; amy 1.0 1 1 121.2 13.8 145 107-256 13-175 (191)
9 2fbe_A Predicted: similar to R 1.0 1 1 120.0 15.1 144 107-255 10-171 (201)
10 3uv9_A TRIM5alpha, tripartite 1.0 1 1 115.7 13.5 145 107-256 12-174 (186)
No 1
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=1.00 E-value=1 Score=667.14 Aligned_cols=476 Identities=18% Similarity=0.185 Sum_probs=398.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHHH
Q ss_conf 339989999999997311246888877988699999999999999999----5219999999-99998669999999999
Q 000809 749 LKEEELLDALLLLYHIGLAPNFKQASYYMSHQSQSISLLEETDKQIRE----RACSEQLKRL-KEARNNYREEVIDCVRH 823 (1273)
Q Consensus 749 ~~~~elld~~~~lY~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~i~~----~~~~~~~~~l-~~~~~~~~e~l~~~~r~ 823 (1273)
+=++|.|+..+.--|+|.++.+.+... ..+++++.++++.+ |...+..+++ ++.++.+++++....+.
T Consensus 387 nFItecFFLT~~a~hlG~~~~~~~~~~-------l~~~i~~~~~~l~~~~~~~~~~p~~~~~~~~~l~~~~~~l~~~~~~ 459 (968)
T 3m62_A 387 NFISDCFFLTLTYLHYGLGGTLSFEEK-------MGSEIKALKEEIEKVKKIAANHDVFARFITAQLSKMEKALKTTESL 459 (968)
T ss_dssp CHHHHHHHHHHHHHHHTHHHHHHHHHT-------HHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 831899999999998574777888999-------9999999999999998441489699999999999999999999999
Q ss_pred HHHHHHHHCCHHHHHHHH----HHHHHHHHHHCC------------CC-----------------CCCCCCCCCCHHHHH
Q ss_conf 888876522365787779----899999876013------------68-----------------889743345047889
Q 000809 824 CAWYRISLFSRWKQRGMY----ATCVWVVQLLLV------------LS-----------------KVDSVFIYIPEFYLE 870 (1273)
Q Consensus 824 ~~w~~~~l~~~~~q~~~~----~~~~WLlrli~~------------~s-----------------~~p~~F~~lPEfylE 870 (1273)
...+++++.++..|...+ .+++||+|++++ +. +.|..|+|+||||||
T Consensus 460 k~~~~~~l~d~~l~~~~~~F~~~~~~wL~rl~~p~~~~p~~~~~LPLp~~~~~~~~~d~~~~l~~~~P~~f~~lPE~~iE 539 (968)
T 3m62_A 460 RFALQGFFAHRSLQLEVFDFICGASTFLIRVVDPEHEFPFKQIKLPLIPDQIGVENVDNADFLRAHAPVPFKYYPEFVVE 539 (968)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHCTTCCTTSSCCCSCSSCCCC----CCCHHHHHHTSCTTGGGSBTHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHCCHHHHH
T ss_conf 99999850799999999999999999999985455568887746778733233212320000345698677637389998
Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCCCHHHHHHHHHHHHH-HHCC----HHH-HHHHHCCH
Q ss_conf 77878887411499989842346655999999998620799-74490347999999875-3034----248-98771499
Q 000809 871 ALVDCFHVLRKSDPPFVPSTIFIKQGLASFVTFVVTHFNDP-RISSADLRDLLLQSISV-LVQY----KDY-LAAFESNE 943 (1273)
Q Consensus 871 ~ivd~f~~l~r~~p~~~~~~~~~~~~l~~~v~Fl~~~l~~~-rIvNP~LKa~Lve~L~~-l~~~----~~~-~~~le~~~ 943 (1273)
|++|||+|++|+.|..+.. .+.++.+++|+++|++++ +|+|||||+||||+|+. +++. ++. .++|++|+
T Consensus 540 di~d~~~F~~r~~p~~l~~----~~~l~~~v~f~i~fl~s~~~IkNP~LraklvevL~~~~~P~~~~~~g~~~~~f~~~~ 615 (968)
T 3m62_A 540 GPVNYSLYISKYQTSPIFR----NPRLGSFVEFTTMVLRCPELVSNPHLKGKLVQLLSVGAMPLTDNSPGFMMDIFEHDE 615 (968)
T ss_dssp HHHHHHHHHTTCTTCTTTT----CTTHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSCCTTSCCCTTHHHHHHCH
T ss_pred HHHHHHHHHHHCCCCCCCC----CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCH
T ss_conf 5999999999708985434----410668999999993791321788889999999874056655688627899986089
Q ss_pred HHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCCCCCCC----CCCC-CCHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 99974689988510046-643045799874048887546667----8998-82999999999976088846899999855
Q 000809 944 AATLRLPKALISAFDNR-SWIPVTNILLRLCKGHGFGSSKHG----ESSS-SSVIFQRLLREACINDEGLFSTFLNRLFN 1017 (1273)
Q Consensus 944 ~a~~~Lv~aLL~~Y~~R-~wi~~~~IL~rlw~g~gF~~rk~~----~~~~-~s~~~q~~l~e~~~~n~~~FvrFlN~LlN 1017 (1273)
++++||++|||+||++. .+|++++ |+ +||++|... ...| .++.||+++..+++.|+++|+||+|+|||
T Consensus 616 la~~~L~~aLm~fYvdvE~TG~~~q----FY--dKFn~R~~I~~Ilk~LW~~~~~yr~~l~~~a~~~~~~FvrFvNlLiN 689 (968)
T 3m62_A 616 LVNKNLLYALLDFYVIVEKTGSSSQ----FY--DKFNSRYSISIILEELYYKIPSYKNQLIWQSQNNADFFVRFVARMLN 689 (968)
T ss_dssp HHHHHHHHHHHHHHHHGGGCCSCCS----SS--CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCH----HH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9999899999999864421688521----78--75331989999999997168999999999997483889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------------HHHH------HHHHCHHHHHCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 467999988799999977644----------------6277------641001234315999999999862236476789
Q 000809 1018 TLSWTMTEFSISIREMQEKYQ----------------VSEF------QQKKCCVIFDLSCNLTRVLEFCTHEIPQAFLSG 1075 (1273)
Q Consensus 1018 dl~~lldEfl~~L~eIq~~~~----------------~~e~------qqr~c~s~f~Ls~~tlr~Le~~T~~~p~~F~~~ 1075 (1273)
|+||+|||++..|++||+.|. .+++ .+|+|++|++|+++|++||++||+++|++|++|
T Consensus 690 D~tyLLDEsL~~L~~I~~~Q~e~~~~~~~~~~~~ee~~~~~~~~l~~~er~a~s~~~La~etv~ml~~~T~~i~~~F~~p 769 (968)
T 3m62_A 690 DLTFLLDEGLSNLAEVHNIQNELDNRARGAPPTREEEDKELQTRLASASRQAKSSCGLADKSMKLFEIYSKDIPAAFVTP 769 (968)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSCCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHCCH
T ss_conf 89999999998789999999998513205776536679999999999875647888747899999999999754341669
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCCCCCCCC--CCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 044899999999999975127842110021001247874377--811124579999976034453222475565236530
Q 000809 1076 TDTNLRRLTELIVFILNHVTSAADAEFFDLSLRRHGQSLEKV--NRGMILAPLVGIILNLLDASAESECGVQNDVVGVFS 1153 (1273)
Q Consensus 1076 ~~~iv~RLa~MLny~L~~l~~~p~~~~~~~~lk~~~~~~ek~--~p~~lL~~i~gIyLNL~~~~~f~~~~~~~~~~~ava 1153 (1273)
+ +|+|||+||||||.+++| || |.++||+ ||||| +|+.+|.+|++||+||+..++| +.|||
T Consensus 770 e--iv~RlA~MLnynL~~LvG-Pk--~~~LKVk----npekY~F~Pk~lL~~i~~IYlnL~~~~~F---------~~aVa 831 (968)
T 3m62_A 770 E--IVYRLASMLNYNLESLVG-PK--CGELKVK----DPQSYSFNPKDLLKALTTVYINLSEQSEF---------ISAVA 831 (968)
T ss_dssp H--HHHHHHHHHHHHHHHHHS-HH--HHTCCCS----CGGGGTCCHHHHHHHHHHHHHHTTTCHHH---------HHHHH
T ss_pred H--HHHHHHHHHHHHHHHHCC-CC--CCCCCCC----CHHHCCCCHHHHHHHHHHHHHHCCCCHHH---------HHHHH
T ss_conf 9--999999999999998558-64--2236648----87644979899999999997603577399---------99998
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 46889300133888863101476669889789999999999999999998887631389999977547322333568177
Q 000809 1154 SMDCPDTIHCGFQYLLEYNWAGSFRGDTYLSKLGQLECFLSLVLCHIEAQEMERTRCGRETDADDGMCCICYASEADAQF 1233 (1273)
Q Consensus 1154 s~D~~sf~~~~f~~l~~i~~~~~~~~~~~~~~i~~l~~l~~~l~~~~~~~e~e~~~~~~~~~~de~~CpIC~~~~~dpV~ 1233 (1273)
.|||||..+.|+++.+|...+ .|.++.+.+++|.+|++++++.+.+.++++. +..++|++|.|||..++|+|||+
T Consensus 832 -~DgRSy~~elF~~a~~il~~~--~~l~~~~~i~~~~~l~~~~~~~~~~~~~~e~--~~~~iP~~F~cPIs~~lM~DPVi 906 (968)
T 3m62_A 832 -KDERSFNRNLFVRAVDILGRK--TGLASPEFIEKLLNFANKAEEQRKADEEEDL--EYGDVPDEFLDPLMYTIMKDPVI 906 (968)
T ss_dssp -HCTTTCCHHHHHHHHHHHTTS--TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCSCGGGBCTTTCSBCSSEEE
T ss_pred -HCCCCCCHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHCCCCHHHHHHCCEE
T ss_conf -058888999999999999986--0699999999999999999999999876531--23499677679241439849867
Q ss_pred ECCCC-CCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 06997-32257789963189999888323423
Q 000809 1234 VPCSH-RSCHGCISRHLLNCLRCFFCNATVLE 1264 (1273)
Q Consensus 1234 lPCgH-~~C~~CI~~hl~~~~~CPfCR~~i~~ 1264 (1273)
+|.|| ++.+++|.+|+.++++||+.|+|++.
T Consensus 907 lpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 907 LPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCEEECHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 28899888799999998359989899797872
No 2
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens}
Probab=1.00 E-value=1 Score=301.85 Aligned_cols=191 Identities=28% Similarity=0.478 Sum_probs=170.5
Q ss_pred CCCCEEEECCCCCCCCEEEECCCCEEEEECCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCCCCCCCCC
Q ss_conf 898528848665889739929993899507520598293010687999999984---19189998349999999999668
Q 000809 104 SGPHIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFTDHKGVGD 180 (1273)
Q Consensus 104 ~gp~~V~LD~~~~~~~i~lS~d~L~v~~~s~~~sVRat~gV~sGkwYfEV~I~s---~G~irIGvat~~~~l~~~~gvG~ 180 (1273)
+.+..|+||+.++++.+.||+|++++++..+|++||++.++.+|+|||||+|.. .+.++|||++..++++. ++|+
T Consensus 8 ~~~~~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~--~~G~ 85 (213)
T 3toj_A 8 CLYERVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQA--PLGY 85 (213)
T ss_dssp EEECCCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTS--CTTS
T ss_pred HCCCEEEECHHHCCCCEEECCCCCEEEECCCEEEEEECCCCCCCEEEEEEEEEECCCCCEEEEEECCCCCCCCC--CCCC
T ss_conf 35770796035178988986998489968853479958776597499999980058886379973357765655--8878
Q ss_pred CCCCEEEECCCCCCCCCC-CCCCCCCCCCCCEEEEEEECCC--------CEEEEEECCEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 999414726994200488-7667987789999999996899--------7599988890520100133346899838999
Q 000809 181 ADDSYAFDGRRVKKWNKE-AEPYGQSWVAGDIIGCCIDLDS--------DEISFYRNGVSLGVAFSGIRKMGPGFGYYPA 251 (1273)
Q Consensus 181 d~~Swgy~g~~g~~~h~~-~~~yG~~f~~GDVIGc~IDld~--------gtI~FtkNG~~LGvAF~~i~~~~~~~~lYPa 251 (1273)
+.+||||+++++++||++ .+.|+++|..||||||+||++. ++|+||+||+.+|+||+++.. +.|||+
T Consensus 86 d~~S~gy~~~~G~~~h~~~~~~yg~~~~~GDvIGc~ld~~~~~~~~~~~g~i~Ft~NG~~lg~aF~~~~~----~~lyPa 161 (213)
T 3toj_A 86 DKFSYSWRSKKGTKFHQSIGKHYSSGYGQGDVLGFYINLPEDTISGRGSSEIIFYKNGVNQGVAYKDIFE----GVYFPA 161 (213)
T ss_dssp STTEEEEETTTTCEEETTEEECCSCCCCTTCEEEEEEEECCC-----CCCEEEEEETTEEEEEEEESCCS----SCBEEE
T ss_pred CCCCEEEECCCCEEEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEEECCCC----CCEEEE
T ss_conf 8886778889970993992765677779999999999858876665776199999699053133774889----969999
Q ss_pred EEECCCCEEEEECCCCCCCCCCC--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99379978999529999745899--9212777887317888999999996316300
Q 000809 252 VSLSQGERCVLNFGARPFKYPIN--CYLPLQESPPVNVFATQLLQCLSRLLGMDKA 305 (1273)
Q Consensus 252 VSl~~g~~V~vNFG~~pFkypp~--Gf~pL~~pP~~~~~a~~ll~~~~~ll~~~~~ 305 (1273)
||+..++.+++|||+ ||+|||+ +|+|+.+. ..+.+.+++++|++++.++
T Consensus 162 vsl~~~~~v~~NFG~-~F~~~p~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~ 212 (213)
T 3toj_A 162 ISLYKSCTVSINFGP-CFKYPPKDLTYRPMSDM----GWGAVVEHTLADVLYHVET 212 (213)
T ss_dssp EEEESSCEEEEECSS-SCSSCCSSCCCEEGGGG----GEEEECCC-----------
T ss_pred EECCCCCEEEEECCC-CCCCCCCCCCEECHHHH----CCCCCCHHHHHHHHHHHHC
T ss_conf 990789999998899-98658998861757782----2334217889888888644
No 3
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=259.07 Aligned_cols=156 Identities=24% Similarity=0.306 Sum_probs=141.1
Q ss_pred CCCCCCCEEEECCCCEEEEEC-CEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 665889739929993899507-5205982930106879999999841---918999834999999999966899941472
Q 000809 113 ESSICGDVRIAKLPLLVESLA-MFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPFTDHKGVGDADDSYAFD 188 (1273)
Q Consensus 113 ~~~~~~~i~lS~d~L~v~~~s-~~~sVRat~gV~sGkwYfEV~I~s~---G~irIGvat~~~~l~~~~gvG~d~~Swgy~ 188 (1273)
..+.+..+.++++.|++++.+ .|++||||.++.+|+|||||+|.+. +.++|||++..+++++ .+|++.+||||+
T Consensus 4 ~~dr~~~l~~~~d~l~~~~~~~~~~~vra~~p~~~g~~YfEv~i~~~~~~~~~~IG~a~~~~~~~~--~~G~d~~S~gy~ 81 (171)
T 2yyo_A 4 GSSGFKHILVDGDTLSYHGNSGEVGCYVASRPLTKDSNYFEVSIVDSGVRGTIAVGLVPQYYSLDH--QPGWLPDSVAYH 81 (171)
T ss_dssp --CEEESEEEETTEEEECCCSSCCEEEECSSCCCSSSCEEEEEEEEETTTCCCEEEEECTTCCTTS--CTTSSTTCEEEE
T ss_pred CCCCCCEEEECCCEEEEECCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCC--CCCCCCCEEEEE
T ss_conf 545763379859999996888965699979987899789999999789885799984279988756--898568889999
Q ss_pred CCCCCCCCCC--CCCCCCCCCCCCEEEEEEECC-----CCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECC-CCEE
Q ss_conf 6994200488--766798778999999999689-----9759998889052010013334689983899999379-9789
Q 000809 189 GRRVKKWNKE--AEPYGQSWVAGDIIGCCIDLD-----SDEISFYRNGVSLGVAFSGIRKMGPGFGYYPAVSLSQ-GERC 260 (1273)
Q Consensus 189 g~~g~~~h~~--~~~yG~~f~~GDVIGc~IDld-----~gtI~FtkNG~~LGvAF~~i~~~~~~~~lYPaVSl~~-g~~V 260 (1273)
++++++||+. ...|+++|.+||||||+||++ .++|+||+||+.+|+||.+++ ...|||+|++.. +++|
T Consensus 82 ~~dG~~~~~~~~~~~yg~~f~~GDvIGc~id~~~~~~~~~~i~Ft~NG~~lg~af~~~~----~~~lyPaV~l~~~g~~v 157 (171)
T 2yyo_A 82 ADDGKLYNGRAKGRQFGSKCNSGDRIGCGIEPVSFDVQTAQIFFTKNGKRVGSTIMPMS----PDGLFPAVGMHSLGEEV 157 (171)
T ss_dssp TTTCCEESSSSCCBCCSCCCCTTCEEEEEECGGGGSSSCEEEEEEETTEEEEEEEESSC----SSSCEEEEEECSTTEEE
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCEECCCEECCCC----CCCEEEEEEEECCCCEE
T ss_conf 49996993999888478887789999999973667888379999989989672131886----78789999985699899
Q ss_pred EEECCCCCCCCCCCC
Q ss_conf 995299997458999
Q 000809 261 VLNFGARPFKYPINC 275 (1273)
Q Consensus 261 ~vNFG~~pFkypp~G 275 (1273)
++|||+ +|+|||.|
T Consensus 158 ~vNFG~-~~~~pp~~ 171 (171)
T 2yyo_A 158 RLHLNA-ELSGPSSG 171 (171)
T ss_dssp EEETTC-CC------
T ss_pred EEECCC-CCCCCCCC
T ss_conf 998999-87699888
No 4
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A
Probab=1.00 E-value=1 Score=199.61 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=133.2
Q ss_pred CCEEEECCCCCCCCEEEECCCCEEEEE---CCEEEEEECCEEECCEEEEEEEEEEC---CEEEEEEECCCCCC---CCCC
Q ss_conf 852884866588973992999389950---75205982930106879999999841---91899983499999---9999
Q 000809 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLETS---GVQQLGWATLSCPF---TDHK 176 (1273)
Q Consensus 106 p~~V~LD~~~~~~~i~lS~d~L~v~~~---s~~~sVRat~gV~sGkwYfEV~I~s~---G~irIGvat~~~~l---~~~~ 176 (1273)
+..++||+.++++.+.||+|++++... ..|.+|+++.++.+|+|||||+|... +.++||||+.+.++ ....
T Consensus 41 ~~~~tlDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vl~~~~~~sGrhYWEV~v~~~~~g~~~~vGv~~~~~~r~~~g~~~ 120 (217)
T 3emw_A 41 QRRHGWNPKDCSENIEVKEGGLYFERRPVAQSTDGARGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQTDHYAA 120 (217)
T ss_dssp HHHTSEEEEEECTTEEEEGGGTEEEECCBSSCEEEEEESCCBSSSEEEEEEECCGGGCTTCCEEEEECTTSCCEESSSCC
T ss_pred CCCEEECCCCCCCCEEECCCCEEEEECCCCCCCCEEEECCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 44037474458998898999839997865788887985997158628999998014778830677774755545688534
Q ss_pred CCCCCCCCEEEECCCCCCCCCCC----CCCC-----CCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf 96689994147269942004887----6679-----87789999999996899759998889052010013334689983
Q 000809 177 GVGDADDSYAFDGRRVKKWNKEA----EPYG-----QSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1273)
Q Consensus 177 gvG~d~~Swgy~g~~g~~~h~~~----~~yG-----~~f~~GDVIGc~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~ 247 (1273)
.+|++..||+|+..++..||++. ..|+ +.|..||+|||.+|+++|+|+||+||+.+|.||+++. +.+
T Consensus 121 ~lG~~~~SW~l~~~~g~~~h~~~~~~~~~~~~~~~~~~~~~~d~IGV~LD~~~G~LsFy~ng~~lg~aF~~~~----~~~ 196 (217)
T 3emw_A 121 LLGSNSESWGWDIGRGKLYHQSKGPGAPQYPAGTQGEQLEVPERLLVVLDMEEGTLGYAIGGTYLGPAFRGLK----GRT 196 (217)
T ss_dssp CTTSSTTEEEEETTTCBEESSCCSSCCCBSSSSSTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----TCC
T ss_pred CCCCCCCEEEEEECCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCC----CCE
T ss_conf 2467997799990898098089066774366533566789999999999958999999999938078787799----998
Q ss_pred EEEEEEEC-CCCEEEEEC
Q ss_conf 89999937-997899952
Q 000809 248 YYPAVSLS-QGERCVLNF 264 (1273)
Q Consensus 248 lYPaVSl~-~g~~V~vNF 264 (1273)
+||+|++. .++.|+++|
T Consensus 197 LyP~~sl~~g~~~v~l~~ 214 (217)
T 3emw_A 197 LYPAVSAVWGQCQVRIRY 214 (217)
T ss_dssp BEEEEEECSTTCEEEEEE
T ss_pred EEEEEEECCCCCEEEEEE
T ss_conf 998999126983899996
No 5
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A
Probab=1.00 E-value=1 Score=194.06 Aligned_cols=156 Identities=19% Similarity=0.304 Sum_probs=131.2
Q ss_pred CCEEEECCCCCCCCEEEECCCC-EEEEE---CCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCC---CC
Q ss_conf 8528848665889739929993-89950---7520598293010687999999984---1918999834999999---99
Q 000809 106 PHIVGLEESSICGDVRIAKLPL-LVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DH 175 (1273)
Q Consensus 106 p~~V~LD~~~~~~~i~lS~d~L-~v~~~---s~~~sVRat~gV~sGkwYfEV~I~s---~G~irIGvat~~~~l~---~~ 175 (1273)
+..++||+.++++++.+|+|+. ++... ..|.+|+++.++++|+|||||+|.. .+.++||||+...+.. ..
T Consensus 30 ~~~~tldp~ta~~~L~lsed~~~~~~~~~~~~~~~~Vlg~~~f~sGrhYWEV~v~~~~~~~~w~vGV~~~~~~r~~~g~~ 109 (212)
T 2jk9_A 30 QLLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIRGKVGYTRGLHVWQITWAMRQRGTHAVVGVATADAPLHSVGYT 109 (212)
T ss_dssp HHHTSEEEEEECTTEEEETTEEEEEEECCBTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCCEEESSC
T ss_pred CCCCCCCHHHCCCCEEEECCCEEEEEECCCCCCCCEEECCCCCCCCEEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 26561482216885698079838999798777625387587746974999999954267885799997577554546765
Q ss_pred CCCCCCCCCEEEECCCCCCCCCCCC----C------CCCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCC
Q ss_conf 9966899941472699420048876----6------79877899999999968997599988890520100133346899
Q 000809 176 KGVGDADDSYAFDGRRVKKWNKEAE----P------YGQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPG 245 (1273)
Q Consensus 176 ~gvG~d~~Swgy~g~~g~~~h~~~~----~------yG~~f~~GDVIGc~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~ 245 (1273)
..+|.+.+||+|++.++++||++.. . +++.|..||+|||+||+++|+|+||+||+.++.+|+++. +
T Consensus 110 ~~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~IGv~LD~e~G~lsFy~ng~~l~~aF~~~~----~ 185 (212)
T 2jk9_A 110 TLVGNNHESWGWDLGRNRLYHDGKNQPSKTYPAFLEPDETFIVPDSFLVALDMDDGTLSFIVDGQYMGVAFRGLK----G 185 (212)
T ss_dssp CCTTSSTTEEEEETTTTEEEESTTTSCCEESSTTSCTTCCCCCCSEEEEEEETTTTEEEEEETTEEEEEEECCCT----T
T ss_pred CCCCCCCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEECCCC----C
T ss_conf 665469976845999882888985467633675345677579999999999899999999999998478731699----9
Q ss_pred CCEEEEEEEC-CCCEEEEECC
Q ss_conf 8389999937-9978999529
Q 000809 246 FGYYPAVSLS-QGERCVLNFG 265 (1273)
Q Consensus 246 ~~lYPaVSl~-~g~~V~vNFG 265 (1273)
.++||++++. .+..|++||=
T Consensus 186 ~~l~P~f~l~~g~~~v~l~~~ 206 (212)
T 2jk9_A 186 KKLYPVVSAVWGHCEIRMRYL 206 (212)
T ss_dssp CCBEEEEEECCTTCEEEEEEE
T ss_pred CEEEEEEEEECCCCEEEEEEC
T ss_conf 879639998759958999977
No 6
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22
Probab=1.00 E-value=1 Score=188.95 Aligned_cols=157 Identities=19% Similarity=0.306 Sum_probs=129.5
Q ss_pred CCEEEECCCCCCCCEEEECCCCEEEEE---CCEEEEEECCEEECCEEEEEEEEEE---CCEEEEEEECCCCCCC---CCC
Q ss_conf 852884866588973992999389950---7520598293010687999999984---1918999834999999---999
Q 000809 106 PHIVGLEESSICGDVRIAKLPLLVESL---AMFSSARANVCVWKGKWMYEVTLET---SGVQQLGWATLSCPFT---DHK 176 (1273)
Q Consensus 106 p~~V~LD~~~~~~~i~lS~d~L~v~~~---s~~~sVRat~gV~sGkwYfEV~I~s---~G~irIGvat~~~~l~---~~~ 176 (1273)
+..++||+.++++++.||+|++++... ..+.+|+++.++.+|+|||||+|.. .+.|.||||+...++. ...
T Consensus 38 ~~~~tLDp~ta~~~L~lSed~~~v~~~~~~~~~~~Vlg~~~f~sGrhYWEV~V~~~~~~~~w~vGV~~~s~~~~r~~~~~ 117 (226)
T 2afj_A 38 QRHHGWNPKDCSENIDVKEGGLCFERRPVAQSTDGVRGKRGYSRGLHAWEISWPLEQRGTHAVVGVATALAPLQADHYAA 117 (226)
T ss_dssp HHHHSSCCSSSCCSSEEETTTTEEECSSCTTTSSSEEECCCCCCSEEEEEEECCCCSSSCCCEEEEEESSCCCSSCSSSC
T ss_pred CCCCEECCCCCCCCEEEECCCEEEEECCCCCCCCEEEECCCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 54657860207997799479879997777887575998987469779999999512788878998467756633366555
Q ss_pred CCCCCCCCEEEECCCCCCCCCCC----CCC-----CCCCCCCCEEEEEEECCCCEEEEEECCEEEECCCCCCCCCCCCCC
Q ss_conf 96689994147269942004887----667-----987789999999996899759998889052010013334689983
Q 000809 177 GVGDADDSYAFDGRRVKKWNKEA----EPY-----GQSWVAGDIIGCCIDLDSDEISFYRNGVSLGVAFSGIRKMGPGFG 247 (1273)
Q Consensus 177 gvG~d~~Swgy~g~~g~~~h~~~----~~y-----G~~f~~GDVIGc~IDld~gtI~FtkNG~~LGvAF~~i~~~~~~~~ 247 (1273)
.+|.+..||+|...++..||++. ..| ++.+..+|+|||+||+++|+|+||+||+.++.+|+++. +.+
T Consensus 118 ~~G~~~~sw~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~rIGV~LD~e~G~lSFy~ng~~l~~aF~~~~----~~~ 193 (226)
T 2afj_A 118 LLGSNSESWGWDIGRGKLYHQSKGLEAPQYPAGPQGEQLVVPERLLVVLDMEEGTLGYSIGGTYLGPAFRGLK----GRT 193 (226)
T ss_dssp CCCCSCEEEEEEGGGTSTTSSSSCCSCSSSSCCSGGGGSCCSSCEEEEEETTTTEEEEESTTCSCSTTHHHHH----HHC
T ss_pred CCCCCCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEEEEEECCC----CCE
T ss_conf 3467898578995898099896626761056545677689989999999888999999999958589887689----987
Q ss_pred EEEEEEEC-CCCEEEEECCC
Q ss_conf 89999937-99789995299
Q 000809 248 YYPAVSLS-QGERCVLNFGA 266 (1273)
Q Consensus 248 lYPaVSl~-~g~~V~vNFG~ 266 (1273)
+||++++. .+..+++||-.
T Consensus 194 L~P~f~l~~g~~~v~l~~~~ 213 (226)
T 2afj_A 194 LYPSVSAVWGQCQVRIRYMG 213 (226)
T ss_dssp CEEEEEECCTTSCCEEEEES
T ss_pred EEEEEECCCCCCEEEEEECC
T ss_conf 98999902699789999807
No 7
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=1.00 E-value=1 Score=121.85 Aligned_cols=147 Identities=16% Similarity=0.060 Sum_probs=110.8
Q ss_pred CCEEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCC
Q ss_conf 852884866588973992999389950-------------7520598293010687999999984191899983499999
Q 000809 106 PHIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPF 172 (1273)
Q Consensus 106 p~~V~LD~~~~~~~i~lS~d~L~v~~~-------------s~~~sVRat~gV~sGkwYfEV~I~s~G~irIGvat~~~~l 172 (1273)
...++||++++++.+.+|+|+.+|... ..+.+|+++.++++|++||||++...+.+.||+|..+.+.
T Consensus 8 ~~~vtLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~R 87 (188)
T 2vok_A 8 MVHITLDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQKEAWDLGVCRDSVQR 87 (188)
T ss_dssp BCCCCBCGGGSCTTEEECTTSCEEEECSSCCCCCCCTTSCCSSSEEEBSCCBSSSEEEEEEECTTCSCEEEEEEETTCCC
T ss_pred CCCEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 55509897568997598899989998986678878832023403314467444887689999667836999994287087
Q ss_pred CCCCCCCCCCCCEEEECCC--CCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCE--EEECCCCCCCCCCCCCCE
Q ss_conf 9999966899941472699--420048876679877899999999968997599988890--520100133346899838
Q 000809 173 TDHKGVGDADDSYAFDGRR--VKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRNGV--SLGVAFSGIRKMGPGFGY 248 (1273)
Q Consensus 173 ~~~~gvG~d~~Swgy~g~~--g~~~h~~~~~yG~~f~~GDVIGc~IDld~gtI~FtkNG~--~LGvAF~~i~~~~~~~~l 248 (1273)
.....+|.+..+|+..-.. ...||+....... -.....||+.+|.++|+|+||-... .+--.|.... -.+++
T Consensus 88 kg~~~~~~~~~~W~l~~~~~~y~~~~~~~~~l~~-~~~~~rVGVfLDye~G~lSFY~v~~~~~~I~tF~~~~---Fs~pL 163 (188)
T 2vok_A 88 KGQFSLSPENGFWTIWLWQDSYEAGTSPQTTLHI-QVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECV---FAGPL 163 (188)
T ss_dssp SSCCCCSTTTTEEEEEEETTEEEECSSSCEEECC-SSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCC---CCSCE
T ss_pred CCCCCCCCCCCEEEEEEECCEEEEEECCCCCEEC-CCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC---CCCCE
T ss_conf 8862348999899999989979999588617805-7898899999883899999997999973559842888---89988
Q ss_pred EEEEEECC
Q ss_conf 99999379
Q 000809 249 YPAVSLSQ 256 (1273)
Q Consensus 249 YPaVSl~~ 256 (1273)
||++++..
T Consensus 164 ~P~F~~~~ 171 (188)
T 2vok_A 164 RPFFNVGF 171 (188)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
T ss_conf 80899253
No 8
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens}
Probab=1.00 E-value=1 Score=121.19 Aligned_cols=145 Identities=12% Similarity=0.040 Sum_probs=109.2
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCC
Q ss_conf 52884866588973992999389950-------------75205982930106879999999841918999834999999
Q 000809 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1273)
Q Consensus 107 ~~V~LD~~~~~~~i~lS~d~L~v~~~-------------s~~~sVRat~gV~sGkwYfEV~I~s~G~irIGvat~~~~l~ 173 (1273)
..++||++++++.+.+|+|+.+|... ..+.+|+++.++++|++||||++...+.+.||+|..+.+..
T Consensus 13 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~p~RF~~~~~VLg~~~fssGrHYWEVev~~~~~w~vGV~~~s~~Rk 92 (191)
T 2wl1_A 13 VNVILDAETAYPNLIFSDDLKSVRLGNKWERLPDGPQRFDSCIIVLGSPSFLSGRRYWEVEVGDKTAWILGACKTSISRK 92 (191)
T ss_dssp CCCEECTTTSCTTEEECTTSCEEEECCTTCCCCCCTTSCSSSCCEEEECCBCSSEEEEEEECTTCSCEEEEEEETTCCSS
T ss_pred EEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 01288876689855987998499988767789899554033345467422168778999995789989999954871888
Q ss_pred CCCCCCCCCCCEEEE---CCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEE--CCEEEECCCCCCCCCCCCCCE
Q ss_conf 999966899941472---699420048876679877899999999968997599988--890520100133346899838
Q 000809 174 DHKGVGDADDSYAFD---GRRVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1273)
Q Consensus 174 ~~~gvG~d~~Swgy~---g~~g~~~h~~~~~yG~~f~~GDVIGc~IDld~gtI~Ftk--NG~~LGvAF~~i~~~~~~~~l 248 (1273)
....+|.+..+|+.. ++....+|+....... -.....||+.+|.++|+|+||- ++..+- .|.... -.+++
T Consensus 93 g~~~~~~~~~~W~l~~~~~~~y~~~~~~~~~l~~-~~~~~rVGVfLDye~G~lSFY~v~~~~~i~-tF~~~~---Fs~pl 167 (191)
T 2wl1_A 93 GNMTLSPENGYWVVIMMKENEYQASSVPPTRLLI-KEPPKRVGIFVDYRVGSISFYNVTARSHIY-TFASCS---FSGPL 167 (191)
T ss_dssp SCCCCCGGGTEEEEEEEETTEEEECCSSCEECCC-SSCCSEEEEEEETTTTEEEEEETTTTEEEE-EECCCC---CCSCE
T ss_pred CCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCC-CCCCCEEEEEEECCCCEEEEEECCCCCCEE-EECCCC---CCCCE
T ss_conf 9602589998999999699989988189726852-268768899988289999999799994148-857988---89888
Q ss_pred EEEEEECC
Q ss_conf 99999379
Q 000809 249 YPAVSLSQ 256 (1273)
Q Consensus 249 YPaVSl~~ 256 (1273)
||++++..
T Consensus 168 ~P~F~~~~ 175 (191)
T 2wl1_A 168 QPIFSPGT 175 (191)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
T ss_conf 75798254
No 9
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22
Probab=1.00 E-value=1 Score=119.97 Aligned_cols=144 Identities=15% Similarity=0.083 Sum_probs=108.0
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEE-------------CCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCC
Q ss_conf 52884866588973992999389950-------------75205982930106879999999841918999834999999
Q 000809 107 HIVGLEESSICGDVRIAKLPLLVESL-------------AMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFT 173 (1273)
Q Consensus 107 ~~V~LD~~~~~~~i~lS~d~L~v~~~-------------s~~~sVRat~gV~sGkwYfEV~I~s~G~irIGvat~~~~l~ 173 (1273)
..++||++++++++.+|+|+.+|... ..+.+|+++.++++|++||||++...+.+.||+|..+.+..
T Consensus 10 ~~~tLDp~TA~~~L~lSed~~~v~~~~~~q~~p~~peRF~~~~~VLg~~~fsSGrHYWEVev~~~~~w~vGV~~~si~Rk 89 (201)
T 2fbe_A 10 VDMTFDVDTANNYLIISEDLRSFRSGDLSQNRKEQAERFDTALCVLGTPRFTSGRHYWEVDVGTSQVWDVGVCKESVNRQ 89 (201)
T ss_dssp CCCCEETTTCCTTEEECTTSSEEEECSSCCCCCCCTTSCSSSCEEEESCCBSSSEEEEEEECTTCSEEEEEEEETTSCCS
T ss_pred EEEEECCCCCCCCEEECCCCCEEEECCCCCCCCCCCCCEEECCCEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCCC
T ss_conf 76788864689845888997289988866788888341210142203763258866899996789889999954860778
Q ss_pred CCCCCCCCCCCEEEECC---CCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEEC--CEEEECCCCCCCCCCCCCCE
Q ss_conf 99996689994147269---94200488766798778999999999689975999888--90520100133346899838
Q 000809 174 DHKGVGDADDSYAFDGR---RVKKWNKEAEPYGQSWVAGDIIGCCIDLDSDEISFYRN--GVSLGVAFSGIRKMGPGFGY 248 (1273)
Q Consensus 174 ~~~gvG~d~~Swgy~g~---~g~~~h~~~~~yG~~f~~GDVIGc~IDld~gtI~FtkN--G~~LGvAF~~i~~~~~~~~l 248 (1273)
....++.+..+|++.-. ....||+..... ..-.....||+.+|.++|+|+||-. +..+ -.|.... -.+++
T Consensus 90 g~~~~~~~~g~W~l~~~~~~~y~~~~~~~~~l-~~~~~~~rVGVfLDye~G~lSFY~v~~~~~i-~tF~~~~---Fs~pL 164 (201)
T 2fbe_A 90 GKIELSSEHGFLTVGCREGKVFAASTVPMTPL-WVSPQLHRVGIFLDVGMRSIAFYNVSDGCHI-YTFIEIP---VCEPW 164 (201)
T ss_dssp SCCCCCTTTTEEEEEEETTTEEEECSSSCEEE-CCCTTCCEEEEEEETTTTEEEEEETTTTEEE-EEECSCC---CSSCE
T ss_pred CCCCCCCCCCEEEEEEECCCEEEEECCCCCCC-CCCCCCCEEEEEEECCCCEEEEEECCCCCEE-EEECCCC---CCCCE
T ss_conf 86146678989999996999899776874468-3477988999998908999999969999304-8976888---89888
Q ss_pred EEEEEEC
Q ss_conf 9999937
Q 000809 249 YPAVSLS 255 (1273)
Q Consensus 249 YPaVSl~ 255 (1273)
||++++.
T Consensus 165 ~P~F~~~ 171 (201)
T 2fbe_A 165 RPFFAHK 171 (201)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
T ss_conf 8199935
No 10
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=1.00 E-value=1 Score=115.75 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=104.9
Q ss_pred CEEEECCCCCCCCEEEECCCCEEEEECCEEEEEECCEEECCEEEEEEEEEECCEEEEEEECCCCCCCC-----CCCCCCC
Q ss_conf 52884866588973992999389950752059829301068799999998419189998349999999-----9996689
Q 000809 107 HIVGLEESSICGDVRIAKLPLLVESLAMFSSARANVCVWKGKWMYEVTLETSGVQQLGWATLSCPFTD-----HKGVGDA 181 (1273)
Q Consensus 107 ~~V~LD~~~~~~~i~lS~d~L~v~~~s~~~sVRat~gV~sGkwYfEV~I~s~G~irIGvat~~~~l~~-----~~gvG~d 181 (1273)
..|+||++++++ +.||+|+..|+.. ...+|++..++++|+|||||++...+.+.||+|....+... ...+|.+
T Consensus 12 v~vTLDp~TA~~-l~lSed~r~Vr~~-~~~~VLG~~~ftsGrHYWEVeV~~~~~W~vGV~~~~~~r~~~~~~~~~~~~~~ 89 (186)
T 3uv9_A 12 VDVTLATNNISH-AVIAEDKRQVSSR-AGTGVLGSQSITSGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPK 89 (186)
T ss_dssp CCCCCCCCSSCC-CEECTTSSCEECC-CSSCEECSSCBCSSEEEEEEECTTCSCEEEEEESCSTTTTTTTHHHHTCCCGG
T ss_pred EEEEECCCCCCC-CEECCCCCEEEEC-CCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCC
T ss_conf 972859887688-1697899987633-99708588978898889999986897188889887764345466787315889
Q ss_pred CCCEEEEC---CCCCCCCCCCC--CCCC------CCCCCCEEEEEEECCCCEEEEEE--CCEEEECCCCCCCCCCCCCCE
Q ss_conf 99414726---99420048876--6798------77899999999968997599988--890520100133346899838
Q 000809 182 DDSYAFDG---RRVKKWNKEAE--PYGQ------SWVAGDIIGCCIDLDSDEISFYR--NGVSLGVAFSGIRKMGPGFGY 248 (1273)
Q Consensus 182 ~~Swgy~g---~~g~~~h~~~~--~yG~------~f~~GDVIGc~IDld~gtI~Ftk--NG~~LGvAF~~i~~~~~~~~l 248 (1273)
..+|+..- +....||+... ..++ .-.....||+.+|+++|+|+||- |...+--.|.... -.+++
T Consensus 90 ~g~W~l~~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~p~rVGVfLDye~G~lSFYnv~d~~~lI~tF~~~~---Fs~pL 166 (186)
T 3uv9_A 90 YGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCS---FSKPV 166 (186)
T ss_dssp GTEEEEEEETTTEEEEEECCCTTSTTSCEEEECCCSSCCSEEEEEEETTTTEEEEEETTTTTEEEEEECSCC---CSSCB
T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCCC---CCCCE
T ss_conf 989999987898899996897412478835843355268889998454999899996788966899947968---89988
Q ss_pred EEEEEECC
Q ss_conf 99999379
Q 000809 249 YPAVSLSQ 256 (1273)
Q Consensus 249 YPaVSl~~ 256 (1273)
||++++..
T Consensus 167 ~P~F~~~~ 174 (186)
T 3uv9_A 167 FPYLNPRK 174 (186)
T ss_dssp EEEEECTT
T ss_pred EEEEECCC
T ss_conf 84798889
Done!