Query 000810
Match_columns 1272
No_of_seqs 637 out of 4061
Neff 7.3
Searched_HMMs 13730
Date Tue Mar 26 16:02:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000810.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_582-585//hhsearch_scop/000810hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1z3ix1 c.37.1.19 (X:390-735) 100.0 0 0 370.1 18.4 257 522-778 2-274 (346)
2 d1z3ix2 c.37.1.19 (X:92-389) R 100.0 1E-43 0 326.3 18.0 218 284-519 54-298 (298)
3 d1z63a1 c.37.1.19 (A:432-661) 100.0 9.8E-43 0 319.3 20.3 221 276-529 4-230 (230)
4 d1z5za1 c.37.1.19 (A:663-906) 100.0 7E-42 0 313.2 22.6 234 531-776 1-239 (244)
5 d2fwra1 c.37.1.19 (A:257-456) 99.9 1E-24 7.4E-29 190.4 5.2 198 526-737 1-199 (200)
6 d2fz4a1 c.37.1.19 (A:24-229) D 99.9 2E-20 1.5E-24 159.7 15.3 144 276-466 61-205 (206)
7 d1wp9a2 c.37.1.19 (A:201-486) 99.8 5.9E-20 4.3E-24 156.4 15.4 134 605-744 140-283 (286)
8 d1rifa_ c.37.1.23 (A:) DNA hel 99.8 8.9E-20 6.5E-24 155.1 12.2 163 284-483 112-278 (282)
9 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 1.4E-17 1E-21 139.3 15.9 137 605-749 10-146 (168)
10 d1s2ma2 c.37.1.19 (A:252-422) 99.8 6.1E-18 4.5E-22 141.9 13.5 135 605-748 15-149 (171)
11 d1wp9a1 c.37.1.19 (A:1-200) pu 99.7 1.4E-16 9.8E-21 132.3 17.7 167 284-483 8-182 (200)
12 d2bmfa2 c.37.1.14 (A:178-482) 99.7 3E-17 2.2E-21 137.0 12.2 262 301-727 6-293 (305)
13 d1hv8a2 c.37.1.19 (A:211-365) 99.7 7.3E-17 5.3E-21 134.2 13.1 134 606-749 13-146 (155)
14 d1fuka_ c.37.1.19 (A:) Initiat 99.7 2.2E-16 1.6E-20 130.9 13.3 125 606-737 11-135 (162)
15 d2j0sa2 c.37.1.19 (A:244-411) 99.7 5.2E-16 3.8E-20 128.1 14.5 130 607-745 19-148 (168)
16 d2rb4a1 c.37.1.19 (A:307-474) 99.6 3.1E-15 2.3E-19 122.6 13.9 124 607-737 17-146 (168)
17 d1oywa3 c.37.1.19 (A:207-406) 99.6 1.1E-14 8.2E-19 118.6 14.1 123 606-735 14-136 (200)
18 d1t5la2 c.37.1.19 (A:415-595) 99.6 3E-13 2.2E-17 108.3 17.1 119 613-737 20-143 (181)
19 d1ofcx2 a.4.1.13 (X:851-978) S 99.5 2.8E-17 2E-21 137.3 -4.1 100 1023-1132 1-111 (128)
20 d1c4oa2 c.37.1.19 (A:410-583) 99.5 2.5E-13 1.8E-17 109.0 14.8 124 615-742 22-150 (174)
21 d2p6ra3 c.37.1.19 (A:1-202) He 99.5 1.9E-13 1.4E-17 109.8 13.1 163 284-485 24-196 (202)
22 d1gkub1 c.37.1.16 (B:1-250) He 99.5 4.6E-13 3.3E-17 107.1 13.9 166 284-480 42-229 (237)
23 d1oywa2 c.37.1.19 (A:1-206) Re 99.3 6.5E-12 4.7E-16 98.8 11.2 168 284-483 24-201 (206)
24 d1gm5a3 c.37.1.19 (A:286-549) 99.3 2.7E-11 1.9E-15 94.4 11.2 159 284-471 82-246 (264)
25 d1yksa1 c.37.1.14 (A:185-324) 99.3 4.9E-12 3.5E-16 99.7 6.9 133 300-466 3-139 (140)
26 d1a1va1 c.37.1.14 (A:190-325) 99.3 3.5E-11 2.5E-15 93.6 10.9 126 302-466 6-136 (136)
27 d2eyqa3 c.37.1.19 (A:546-778) 99.2 8.5E-10 6.2E-14 83.7 17.3 158 284-470 54-217 (233)
28 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.2 1.4E-09 1E-13 82.1 15.8 152 285-466 26-186 (208)
29 d1wrba1 c.37.1.19 (A:164-401) 99.2 5.8E-09 4.2E-13 77.7 18.7 175 269-474 21-224 (238)
30 d2j0sa1 c.37.1.19 (A:22-243) P 99.1 4E-09 2.9E-13 78.9 16.1 153 284-466 38-200 (222)
31 d1veca_ c.37.1.19 (A:) DEAD bo 99.0 4.5E-09 3.3E-13 78.5 13.5 153 284-466 24-187 (206)
32 d2p6ra4 c.37.1.19 (A:203-403) 99.0 1.4E-09 1E-13 82.1 10.5 84 651-737 97-187 (201)
33 d1t6na_ c.37.1.19 (A:) Spliceo 99.0 3.2E-08 2.4E-12 72.4 17.3 162 284-475 22-195 (207)
34 d2g9na1 c.37.1.19 (A:21-238) I 99.0 1.1E-08 8.3E-13 75.6 13.3 154 284-466 33-196 (218)
35 d1qdea_ c.37.1.19 (A:) Initiat 99.0 4E-08 2.9E-12 71.7 15.9 160 284-475 31-200 (212)
36 d1jr6a_ c.37.1.14 (A:) HCV hel 98.9 1E-09 7.6E-14 83.1 7.4 100 622-736 33-136 (138)
37 d1gkub2 c.37.1.16 (B:251-498) 98.9 1.7E-11 1.2E-15 95.9 -2.5 102 608-725 12-118 (248)
38 d1a1va2 c.37.1.14 (A:326-624) 98.9 1.7E-09 1.3E-13 81.5 5.9 142 623-775 35-189 (299)
39 d1fp0a1 g.50.1.2 (A:19-88) Nuc 98.8 2E-09 1.4E-13 81.1 5.7 52 48-99 4-55 (70)
40 d2b2ya1 b.34.13.2 (A:108-187) 98.8 3.1E-10 2.3E-14 86.8 0.5 57 187-243 19-79 (80)
41 d1mm2a_ g.50.1.2 (A:) Mi2-beta 98.8 4.3E-09 3.2E-13 78.6 5.6 53 47-99 5-57 (61)
42 d1s2ma1 c.37.1.19 (A:46-251) P 98.8 5.2E-07 3.8E-11 63.8 16.2 159 284-473 22-190 (206)
43 d2eyqa5 c.37.1.19 (A:779-989) 98.8 6.7E-08 4.9E-12 70.1 11.7 117 613-734 20-139 (211)
44 d2dy8a1 b.34.13.2 (A:279-347) 98.8 9.2E-10 6.7E-14 83.4 1.8 57 188-244 3-65 (69)
45 d1gm5a4 c.37.1.19 (A:550-755) 98.8 1.4E-09 1.1E-13 82.0 2.7 118 608-728 13-142 (206)
46 d1q0ua_ c.37.1.19 (A:) Probabl 98.7 4.1E-07 3E-11 64.5 14.1 160 284-474 22-195 (209)
47 d1ofcx1 a.4.1.3 (X:799-850) SA 98.6 2.3E-08 1.7E-12 73.5 6.2 48 972-1022 2-52 (52)
48 d2b2ya2 b.34.13.2 (A:13-107) A 98.6 1.8E-09 1.3E-13 81.3 -0.3 74 100-176 2-88 (95)
49 d2dy7a1 b.34.13.2 (A:172-252) 98.5 3.5E-08 2.6E-12 72.1 3.5 72 99-175 5-79 (81)
50 d1g6za_ b.34.13.2 (A:) Histone 98.4 2E-07 1.5E-11 66.7 4.9 56 189-245 7-64 (70)
51 d1f62a_ g.50.1.2 (A:) Williams 98.3 1.3E-07 9.3E-12 68.1 2.9 45 53-97 2-49 (51)
52 d2dnta1 b.34.13.2 (A:8-73) Chr 98.3 2.7E-07 2E-11 65.8 4.3 56 191-246 6-62 (66)
53 d1tf5a4 c.37.1.19 (A:396-570) 98.3 1.4E-05 1E-09 53.6 13.1 121 606-731 16-144 (175)
54 d1guwa_ b.34.13.2 (A:) Heteroc 98.3 3.2E-07 2.4E-11 65.2 4.3 53 190-244 13-65 (73)
55 d1q3la_ b.34.13.2 (A:) Heteroc 98.2 1.4E-07 1E-11 67.8 2.0 49 193-242 3-51 (52)
56 d1yksa2 c.37.1.14 (A:325-623) 98.2 1.5E-05 1.1E-09 53.4 11.3 106 622-737 34-158 (299)
57 d1weva_ g.50.1.2 (A:) PHD fing 98.0 6E-07 4.4E-11 63.3 1.2 47 51-97 16-71 (88)
58 d1pfba_ b.34.13.2 (A:) Polycom 98.0 9.4E-07 6.9E-11 61.9 1.4 49 192-241 4-52 (55)
59 d2dnva1 b.34.13.2 (A:7-58) Chr 97.9 2.4E-06 1.7E-10 59.1 3.2 49 191-240 4-52 (52)
60 d2dy8a1 b.34.13.2 (A:279-347) 97.7 3.2E-06 2.3E-10 58.1 0.6 61 99-176 6-66 (69)
61 d1tf5a3 c.37.1.19 (A:1-226,A:3 97.7 0.001 7.4E-08 40.2 12.9 159 283-479 78-264 (273)
62 d1wesa_ g.50.1.2 (A:) PHD Inhi 97.6 2.9E-05 2.1E-09 51.2 4.9 46 51-99 16-66 (71)
63 d1nkta3 c.37.1.19 (A:-15-225,A 97.6 0.0019 1.4E-07 38.3 13.1 122 283-440 95-229 (288)
64 d2b2ya1 b.34.13.2 (A:108-187) 97.5 1.1E-05 8E-10 54.3 1.1 56 100-174 24-79 (80)
65 d2dy7a1 b.34.13.2 (A:172-252) 97.5 2.5E-05 1.9E-09 51.7 2.8 51 191-241 5-76 (81)
66 d1nkta4 c.37.1.19 (A:397-615) 97.3 0.0043 3.2E-07 35.7 13.5 84 606-694 16-99 (219)
67 d2b2ya2 b.34.13.2 (A:13-107) A 97.3 3.6E-05 2.6E-09 50.6 2.1 42 201-242 40-85 (95)
68 d1weea_ g.50.1.2 (A:) PHD fing 97.3 4.7E-05 3.4E-09 49.8 2.6 46 52-98 17-66 (72)
69 d1w36d1 c.37.1.19 (D:2-360) Ex 97.2 0.0063 4.6E-07 34.6 13.9 153 284-472 147-303 (359)
70 d1we9a_ g.50.1.2 (A:) PHD fing 97.2 7.9E-05 5.7E-09 48.2 2.2 49 50-98 5-58 (64)
71 d1x3pa1 b.34.13.2 (A:1-54) CpS 97.1 3.7E-05 2.7E-09 50.5 0.4 45 193-241 2-48 (54)
72 d1guwa_ b.34.13.2 (A:) Heteroc 96.9 9E-05 6.5E-09 47.8 0.5 53 100-176 14-66 (73)
73 d1g6za_ b.34.13.2 (A:) Histone 96.8 0.00011 8.2E-09 47.0 0.7 56 100-176 9-64 (70)
74 d2dnta1 b.34.13.2 (A:8-73) Chr 96.8 8.1E-05 5.9E-09 48.1 -0.5 56 99-176 6-61 (66)
75 d2pnxa1 g.50.1.2 (A:195-245) I 96.7 0.00025 1.8E-08 44.6 1.5 43 52-97 3-50 (51)
76 d1wepa_ g.50.1.2 (A:) PHD fing 96.6 0.00016 1.1E-08 46.0 0.1 49 51-100 12-65 (79)
77 d1pfba_ b.34.13.2 (A:) Polycom 96.5 8.6E-05 6.3E-09 47.9 -1.6 50 101-174 5-54 (55)
78 d1q3la_ b.34.13.2 (A:) Heteroc 96.5 9.8E-05 7.1E-09 47.5 -1.6 49 101-173 3-51 (52)
79 d2dnva1 b.34.13.2 (A:7-58) Chr 96.4 0.00017 1.3E-08 45.7 -0.6 41 99-155 4-44 (52)
80 d1wema_ g.50.1.2 (A:) Death as 96.3 5.8E-05 4.2E-09 49.1 -3.8 49 48-97 13-69 (76)
81 d1x3pa1 b.34.13.2 (A:1-54) CpS 96.1 0.00054 3.9E-08 42.2 0.4 50 101-175 2-51 (54)
82 d1wewa_ g.50.1.2 (A:) Sumoylat 95.7 0.0012 8.9E-08 39.7 0.7 48 51-99 16-73 (78)
83 d1a5ta2 c.37.1.20 (A:1-207) de 95.0 0.079 5.8E-06 26.7 10.0 48 285-332 2-52 (207)
84 d1t5la1 c.37.1.19 (A:2-414) Nu 94.5 0.11 7.7E-06 25.8 11.0 74 289-366 15-90 (413)
85 d2ckxa1 a.4.1.3 (A:578-660) Te 94.5 0.0018 1.3E-07 38.5 -1.3 52 1082-1133 1-52 (83)
86 d1w0ta_ a.4.1.4 (A:) DNA-bindi 94.4 0.017 1.2E-06 31.5 3.5 31 1081-1111 2-32 (52)
87 d1gm5a3 c.37.1.19 (A:286-549) 94.3 0.12 8.5E-06 25.5 13.1 130 536-704 80-214 (264)
88 d1x41a1 a.4.1.1 (A:8-54) Trans 93.8 0.026 1.9E-06 30.1 3.6 28 1082-1109 2-29 (47)
89 d1sxje2 c.37.1.20 (E:4-255) Re 93.7 0.03 2.2E-06 29.7 3.8 30 303-332 32-61 (252)
90 d2huga1 b.34.13.2 (A:3-57) CpS 93.7 0.016 1.1E-06 31.7 2.3 47 190-240 4-50 (55)
91 d1w0ua_ a.4.1.4 (A:) Telomeric 93.7 0.03 2.2E-06 29.8 3.7 30 1082-1111 3-32 (55)
92 d1uaaa1 c.37.1.19 (A:2-307) DE 92.9 0.13 9.3E-06 25.2 6.0 64 285-354 1-68 (306)
93 d1njfa_ c.37.1.20 (A:) delta p 92.2 0.24 1.8E-05 23.2 11.6 41 291-331 18-61 (239)
94 d1gvda_ a.4.1.3 (A:) c-Myb, DN 91.5 0.066 4.8E-06 27.3 3.1 29 1082-1110 4-32 (52)
95 d1guua_ a.4.1.3 (A:) c-Myb, DN 91.4 0.07 5.1E-06 27.1 3.2 30 1082-1111 2-31 (50)
96 d1pjra1 c.37.1.19 (A:1-318) DE 90.6 0.35 2.5E-05 22.1 8.0 57 285-347 11-70 (318)
97 d2gnoa2 c.37.1.20 (A:11-208) g 90.1 0.38 2.8E-05 21.8 11.0 52 290-342 2-55 (198)
98 d1wila_ g.50.1.3 (A:) Hypothet 89.5 0.089 6.5E-06 26.3 2.4 49 50-98 14-76 (89)
99 d1sxjb2 c.37.1.20 (B:7-230) Re 88.9 0.38 2.8E-05 21.8 5.2 41 289-331 22-63 (224)
100 d2cjja1 a.4.1.3 (A:8-70) Radia 88.4 0.2 1.4E-05 23.9 3.4 42 971-1012 6-48 (63)
101 d1c4oa1 c.37.1.19 (A:2-409) Nu 87.6 0.55 4E-05 20.7 9.3 76 286-365 9-86 (408)
102 d2cqra1 a.4.1.3 (A:7-66) DnaJ 84.1 0.52 3.8E-05 20.9 3.8 29 1081-1109 12-43 (60)
103 d1gv2a2 a.4.1.3 (A:144-190) c- 83.6 0.48 3.5E-05 21.1 3.4 27 1082-1109 2-28 (47)
104 d2eyqa3 c.37.1.19 (A:546-778) 82.6 0.91 6.7E-05 19.1 12.7 97 606-705 86-187 (233)
105 d2iw5b1 a.4.1.3 (B:376-440) RE 81.0 0.94 6.9E-05 19.0 4.1 45 968-1015 7-51 (65)
106 d1r6bx2 c.37.1.20 (X:169-436) 80.8 1.1 7.7E-05 18.6 7.8 31 302-332 37-67 (268)
107 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 78.9 1.2 8.7E-05 18.3 7.8 54 284-343 10-66 (623)
108 d2huga1 b.34.13.2 (A:3-57) CpS 78.3 0.2 1.4E-05 23.9 -0.1 39 99-155 5-43 (55)
109 d1sxjc2 c.37.1.20 (C:12-238) R 77.4 1.3 9.6E-05 17.9 10.3 44 286-331 18-62 (227)
110 d2fmma1 b.34.13.2 (A:108-175) 75.7 0.29 2.1E-05 22.7 0.2 29 192-220 10-38 (68)
111 d1ug2a_ a.4.1.3 (A:) 2610100b2 75.2 1.1 8E-05 18.5 3.1 50 969-1018 36-85 (95)
112 d1okkd2 c.37.1.10 (D:97-303) G 75.0 1.5 0.00011 17.5 10.1 39 304-342 6-44 (207)
113 d1vyxa_ g.44.1.3 (A:) IE1B pro 74.8 0.087 6.3E-06 26.4 -2.6 50 48-99 3-57 (60)
114 d1xc5a1 a.4.1.3 (A:413-480) Nu 74.6 1.4 0.0001 17.7 3.5 40 969-1011 20-59 (68)
115 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 74.4 1.6 0.00011 17.4 5.8 48 969-1017 4-52 (59)
116 d1iyma_ g.44.1.1 (A:) EL5 RING 72.3 1.1 8.1E-05 18.5 2.5 43 52-98 6-52 (55)
117 d2crga1 a.4.1.3 (A:8-64) Metas 69.7 2 0.00014 16.7 4.8 46 967-1016 2-48 (57)
118 d1iqpa2 c.37.1.20 (A:2-232) Re 69.2 2 0.00015 16.6 10.1 43 287-331 29-72 (231)
119 d2qy9a2 c.37.1.10 (A:285-495) 66.4 2.3 0.00017 16.2 10.3 54 307-361 12-65 (211)
120 d1igna1 a.4.1.6 (A:360-445) DN 65.7 2.1 0.00015 16.5 2.8 49 1082-1134 2-55 (86)
121 d1v87a_ g.44.1.1 (A:) Deltex p 65.2 0.37 2.7E-05 21.9 -1.1 51 50-100 24-93 (114)
122 d1sxjd2 c.37.1.20 (D:26-262) R 64.4 2.5 0.00018 16.0 7.6 41 288-330 18-59 (237)
123 d1vmaa2 c.37.1.10 (A:82-294) G 63.9 2.6 0.00019 15.9 9.9 58 307-365 14-71 (213)
124 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 61.1 2.9 0.00021 15.6 5.7 45 969-1016 5-49 (65)
125 d3deoa1 b.34.13.2 (A:85-128) C 58.4 2.4 0.00018 16.1 2.0 36 193-230 1-37 (44)
126 d1fbva4 g.44.1.1 (A:356-434) C 58.2 2.1 0.00016 16.5 1.7 56 47-105 19-74 (79)
127 d3dplr1 g.44.1.1 (R:19-106) RI 57.5 0.78 5.7E-05 19.6 -0.6 33 63-99 51-83 (88)
128 d1fnna2 c.37.1.20 (A:1-276) CD 51.7 4 0.00029 14.5 8.1 59 278-336 11-75 (276)
129 d1e32a2 c.37.1.20 (A:201-458) 50.3 4.2 0.00031 14.4 4.9 42 304-349 38-79 (258)
130 d2f5ka1 b.34.13.3 (A:6-88) Mor 49.2 0.74 5.4E-05 19.8 -1.8 26 131-156 35-60 (83)
131 d1qvra2 c.37.1.20 (A:149-535) 49.1 4.4 0.00032 14.2 7.6 57 287-345 27-90 (387)
132 d1dx8a_ g.41.5.1 (A:) Rubredox 47.4 4.6 0.00034 14.1 2.2 41 64-105 8-56 (70)
133 d1ofha_ c.37.1.20 (A:) HslU {H 45.8 4.9 0.00036 13.9 2.8 38 303-344 48-85 (309)
134 d1jbka_ c.37.1.20 (A:) ClpB, A 43.1 5.3 0.00039 13.6 10.6 67 287-354 27-105 (195)
135 d1zbdb_ g.50.1.1 (B:) Effector 41.1 4.6 0.00034 14.1 1.2 47 51-97 48-99 (124)
136 d1iroa_ g.41.5.1 (A:) Rubredox 39.1 6.1 0.00045 13.2 2.0 38 64-102 4-49 (53)
137 d1chca_ g.44.1.1 (A:) Immediat 38.6 2.6 0.00019 15.9 -0.4 47 50-100 4-51 (68)
138 d1w44a_ c.37.1.11 (A:) NTPase 36.9 6.6 0.00048 13.0 1.9 48 303-352 121-169 (321)
139 d1sxja2 c.37.1.20 (A:295-547) 33.9 7.3 0.00053 12.6 9.5 24 305-328 53-76 (253)
140 d1ofcx3 a.187.1.1 (X:697-798) 33.6 3.3 0.00024 15.1 -0.5 22 949-970 78-102 (102)
141 d2dsxa1 g.41.5.1 (A:1-52) Rubr 33.5 7.4 0.00054 12.6 2.2 38 63-101 3-48 (52)
142 d1j8yf2 c.37.1.10 (F:87-297) G 33.4 7.5 0.00054 12.6 9.8 49 307-356 15-63 (211)
143 d2i3ba1 c.37.1.11 (A:1-189) Ca 32.8 7.6 0.00055 12.5 5.2 39 305-343 2-40 (189)
144 d2eyqa2 c.37.1.19 (A:349-465) 31.3 8 0.00058 12.3 3.1 70 621-705 31-100 (117)
145 d1p9ra_ c.37.1.11 (A:) Extrace 30.3 8.3 0.00061 12.2 6.3 46 284-331 140-185 (401)
146 d1ls1a2 c.37.1.10 (A:89-295) G 29.9 8.5 0.00062 12.2 10.9 52 304-356 9-61 (207)
147 d1g6oa_ c.37.1.11 (A:) Hexamer 29.8 8.5 0.00062 12.2 4.5 126 292-478 154-279 (323)
148 d1xbta1 c.37.1.24 (A:18-150) T 28.8 8.8 0.00064 12.0 9.0 37 307-344 5-41 (133)
149 d1g25a_ g.44.1.1 (A:) TFIIH Ma 28.3 5.3 0.00039 13.6 -0.2 47 51-100 3-54 (65)
150 d1jm7a_ g.44.1.1 (A:) brca1 RI 26.6 7.4 0.00054 12.6 0.3 47 51-99 21-68 (103)
151 d1byia_ c.37.1.10 (A:) Dethiob 26.5 9.6 0.0007 11.8 4.7 34 307-341 5-38 (224)
152 d1ur6b_ g.44.1.1 (B:) Not-4 N- 23.2 7.7 0.00056 12.5 -0.1 44 54-100 3-50 (52)
153 d1xx6a1 c.37.1.24 (A:2-142) Th 22.3 11 0.00084 11.2 9.0 36 307-343 10-45 (141)
154 d1brfa_ g.41.5.1 (A:) Rubredox 22.1 12 0.00084 11.2 1.8 37 65-102 4-48 (53)
155 d1g41a_ c.37.1.20 (A:) HslU {H 21.0 12 0.00088 11.1 4.7 37 303-343 48-84 (443)
156 d1ixza_ c.37.1.20 (A:) AAA dom 21.0 12 0.00089 11.1 2.9 44 304-351 42-85 (247)
157 d1pd0a5 g.41.10.1 (A:216-300) 20.9 12 0.00089 11.0 1.6 34 60-97 10-43 (85)
158 d6rxna_ g.41.5.1 (A:) Rubredox 20.8 12 0.00089 11.0 2.1 35 64-99 4-39 (45)
159 d2b8ta1 c.37.1.24 (A:11-149) T 20.0 13 0.00093 10.9 10.8 37 307-344 5-41 (139)
No 1
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=0 Score=370.10 Aligned_cols=257 Identities=32% Similarity=0.555 Sum_probs=215.9
Q ss_pred HHHH-HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHCCCCCCCCC----CCCC--
Q ss_conf 6673-1199960499850589999999999999999999932-896026999999999981786534588----9995--
Q 000810 522 KDVM-KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGV----EPDI-- 593 (1272)
Q Consensus 522 ~dv~-~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~-~~~~~~l~~~l~~Lrk~c~hP~L~~~~----e~~~-- 593 (1272)
.+|+ +.||||.+++++|+||+.|+++|+.++.+........ +....+.++.++.||++||||+|+... ....
T Consensus 2 ~~vl~k~LP~K~e~vv~v~LS~~Q~~lY~~~l~~~~~~~~~~~~~~~~~~L~~l~~LRkiCnHP~L~~~~~~~~~~~~~~ 81 (346)
T d1z3ix1 2 SDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDG 81 (346)
T ss_dssp GGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTT
T ss_pred HHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCC
T ss_conf 21333408898799999697999999999999989999865448716899999999999957998861111022112320
Q ss_pred -----CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHH
Q ss_conf -----4606999998842127999999999999-7086289982122269999999872798089995778989999999
Q 000810 594 -----EDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1272)
Q Consensus 594 -----~~~~~~~~~li~~SgKl~~L~klL~~l~-~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I 667 (1272)
.............|+|+.+|..+|..+. ..|+||||||+|+.++++|+++|..+|+.|.+++|+++..+|+.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i 161 (346)
T d1z3ix1 82 ALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIV 161 (346)
T ss_dssp GGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 03312334100001400178999999999998875189516886301456799999763002411011100278899999
Q ss_pred HHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 99712699942899624533345475678889996699994138899994522099993599999508989999999999
Q 000810 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTK 747 (1272)
Q Consensus 668 d~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~ 747 (1272)
++||++.+..+|||++++|||+||||+.|++||+||++|||..+.||+||+||+||+++|+||||+++|||||+|++++.
T Consensus 162 ~~F~~~~~~~~vlLls~~agg~GlnL~~a~~vi~~d~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli~~~TiEe~i~~~~~ 241 (346)
T d1z3ix1 162 ERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQA 241 (346)
T ss_dssp HHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHH
T ss_pred HHHHCCCCCCEEEEECCHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCHHHHHHHHHH
T ss_conf 86510234330254033144433565643079994578861558676333403489984389998738989999999999
Q ss_pred HHHHHHHHHHCCHH--CCCCCHHHHHHHHHHCH
Q ss_conf 99999999851000--04899999999998221
Q 000810 748 KKMVLEHLVVGRLK--AQNINQEELDDIIRYGS 778 (1272)
Q Consensus 748 ~K~~L~~~v~g~~~--~~~~~~~el~~ll~~ga 778 (1272)
.|+.+...|++... ...++.++|.++|.+..
T Consensus 242 ~K~~l~~~v~~~~~~~~~~~~~~~l~~lf~~~~ 274 (346)
T d1z3ix1 242 HKKALSSCVVDEEQDVERHFSLGELRELFSLNE 274 (346)
T ss_dssp HHHHTSCCCCSCSSSCCCSSCHHHHHHHTCCCS
T ss_pred HHHHHHHHHHCCCHHHHHCCCHHHHHHHHCCCC
T ss_conf 999999987588655540289999999964787
No 2
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=100.00 E-value=1e-43 Score=326.34 Aligned_cols=218 Identities=36% Similarity=0.567 Sum_probs=183.2
Q ss_pred CCCCHHHHHHHHHHHHHH-----CCCCCEEEEECCCCHHHHHHHHHHHHHHHCC------CCCEEEEECCCCHHHHHHHH
Q ss_conf 999288999999999833-----1798569990899809999999999984089------99679996671289999999
Q 000810 284 GSLHPYQLEGLNFLRFSW-----SKQTHVILADEMGLGKTIQSIAFLASLFGER------ISPHLVVAPLSTLRNWEREF 352 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~-----~~~~~~ILaDemGlGKTiqaia~l~~l~~~~------~~p~LIVvP~sll~qW~~E~ 352 (1272)
..|+|||++||+||..++ ..+.||||||+||+|||+|+|+++.++.... .+++|||||.+++.||.+||
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~sl~~qW~~Ei 133 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVRNWYNEV 133 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 10209999999999998773541268746987478788999999999999984601168877379980504557899988
Q ss_pred HHHCCC-CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEE
Q ss_conf 988799-9099997572577899985202799902221013675321222223555399901888873110137874125
Q 000810 353 ATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQC 431 (1272)
Q Consensus 353 ~~~~p~-~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~ 431 (1272)
.+|++. ..++.++|....+......++.... .....++++|+||+.+..+...+..++|++
T Consensus 134 ~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~v~i~sy~~~~~~~~~l~~~~~~~ 195 (298)
T d1z3ix2 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQ------------------GMRIPTPILIISYETFRLHAEVLHKGKVGL 195 (298)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCC------------------SSCCSCCEEEEEHHHHHHHTTTTTTSCCCE
T ss_pred HHHCCCCEEEEEEECCHHHHHHHHHHHHHHCC------------------CCCCCCEEEEEEECCCCCCHHCCCCCCEEE
T ss_conf 76357752599996862777888998765303------------------766661399986123222200033421145
Q ss_pred EEECCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH------------
Q ss_conf 87054433578111899999820025578970568999988999999842379989958899998302------------
Q 000810 432 MIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI------------ 499 (1272)
Q Consensus 432 vIiDEaHrlKn~~s~~~~~l~~l~~~~rllLTGTPlqNn~~EL~~ll~fL~p~~f~~~~~F~~~f~~~------------ 499 (1272)
||+||||++||..++.++++..+.+.+||+|||||++|++.|||++++||.|+.|++...|.+.|...
T Consensus 196 vI~DEaH~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~~~~~~~~F~~~f~~pi~~~~~~~~~~~ 275 (298)
T d1z3ix2 196 VICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDK 275 (298)
T ss_dssp EEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSH
T ss_pred EECCCCCCCCCCCCHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCHH
T ss_conf 41142322013220345644213411256522607766668899999874877579999999999669873766687678
Q ss_pred ---HHHHHHHHHHHHHHHHHHHH
Q ss_conf ---13999999999720246777
Q 000810 500 ---NQEEQISRLHRMLAPHLLRR 519 (1272)
Q Consensus 500 ---~~~~~i~~L~~~L~p~~lRR 519 (1272)
.....+.+|+.++.|||+||
T Consensus 276 ~~~~~~~~l~~L~~~l~~~~lRR 298 (298)
T d1z3ix2 276 DRAAGEQKLQELISIVNRCLIRR 298 (298)
T ss_dssp HHHHHHHHHHHHHHHHHHHEECC
T ss_pred HHHHHHHHHHHHHHHHHHHEECC
T ss_conf 89989999999999722231679
No 3
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=9.8e-43 Score=319.31 Aligned_cols=221 Identities=34% Similarity=0.717 Sum_probs=193.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHH
Q ss_conf 789888899992889999999998331798569990899809999999999984089-9967999667128999999998
Q 000810 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 276 ~~P~~~~~~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
.+|..+. .+|+|||++|++||......+.||||||+||+|||+|+++++..+...+ ..++|||||.+++.||.+|+.+
T Consensus 4 ~~P~~~~-~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~l~~~W~~e~~~ 82 (230)
T d1z63a1 4 LEPYNIK-ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSK 82 (230)
T ss_dssp CCCCSCS-SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHH
T ss_pred CCCHHHH-CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHH
T ss_conf 6944650-450699999999999862169987998589988699998735544212355644110535542677777776
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 87999099997572577899985202799902221013675321222223555399901888873110137874125870
Q 000810 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1272)
Q Consensus 355 ~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIi 434 (1272)
|++...+..+.+..... ....++|+|++|+.+... ..+..+.|++||+
T Consensus 83 ~~~~~~~~~~~~~~~~~-------------------------------~~~~~~vvi~~~~~~~~~-~~l~~~~~~~vI~ 130 (230)
T d1z63a1 83 FAPHLRFAVFHEDRSKI-------------------------------KLEDYDIILTTYAVLLRD-TRLKEVEWKYIVI 130 (230)
T ss_dssp HCTTSCEEECSSSTTSC-------------------------------CGGGSSEEEEEHHHHTTC-HHHHTCCEEEEEE
T ss_pred HCCCCCCEEECCCCCHH-------------------------------HCCCCCEEEEEHHHHHHH-HHHHCCCCEEEEE
T ss_conf 40254410101421000-------------------------------025768898549999868-8874165139999
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHH---HHHHHHHHHHHH
Q ss_conf 54433578111899999820025578970568999988999999842379989958899998302---139999999997
Q 000810 435 DEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHRM 511 (1272)
Q Consensus 435 DEaHrlKn~~s~~~~~l~~l~~~~rllLTGTPlqNn~~EL~~ll~fL~p~~f~~~~~F~~~f~~~---~~~~~i~~L~~~ 511 (1272)
||||++||..+..++++..+.+.+||+|||||++|++.|||++++|+.|..|+++..|...|... .......+|+.+
T Consensus 131 DEah~~k~~~s~~~~~~~~l~a~~r~~LTgTPi~n~~~dl~~ll~~l~p~~~~~~~~F~~~~~~~~~~~~~~~~~~L~~~ 210 (230)
T d1z63a1 131 DEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAI 210 (230)
T ss_dssp ETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHH
T ss_pred EHHHCCCCCCHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 71003443220556665440465579972526776788899888762898678999999998445532677899999998
Q ss_pred HHHHHHHHHHHH--HHHCCC
Q ss_conf 202467777766--731199
Q 000810 512 LAPHLLRRVKKD--VMKELP 529 (1272)
Q Consensus 512 L~p~~lRR~k~d--v~~~LP 529 (1272)
+.||++||+|.| |.++||
T Consensus 211 l~~~~lRr~K~d~~v~~dLP 230 (230)
T d1z63a1 211 ISPFILRRTKYDKAIINDLP 230 (230)
T ss_dssp HTTTEECCCTTCHHHHTTSC
T ss_pred HHCCEEEEECCCCCHHHCCC
T ss_conf 42337997168861755679
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=100.00 E-value=7e-42 Score=313.17 Aligned_cols=234 Identities=27% Similarity=0.456 Sum_probs=203.9
Q ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6049985058999999999999999999993289--60269999999999817865345889995460699999884212
Q 000810 531 KKELILRVELSSKQKEYYKAILTRNYQILTRRGG--AQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSG 608 (1272)
Q Consensus 531 k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~--~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~Sg 608 (1272)
|.|..++|+||+.|+++|+.++......+....+ ....+++.+++||++|+||+|++..+.. +..|+
T Consensus 1 Kie~~v~~~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~iL~~l~~Lrqic~hP~l~~~~~~~-----------~~~S~ 69 (244)
T d1z5za1 1 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQS-----------VRRSG 69 (244)
T ss_dssp CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCC-----------STTCH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-----------HHHHH
T ss_conf 9899999498999999999999999998761124002789999999987652287521233310-----------21206
Q ss_pred HHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 799999999999970862899821222699999998727-9808999577898999999999712699942899624533
Q 000810 609 KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1272)
Q Consensus 609 Kl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTrag 687 (1272)
|+..|.+++..+...|+||||||+|..++++|+.++... ++++.+++|+++..+|+.++++|+++++. .++|+++.+|
T Consensus 70 K~~~l~~~l~~~~~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~-~vll~~~~~~ 148 (244)
T d1z5za1 70 KMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSV-KFIVLSVKAG 148 (244)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTC-CEEEEECCTT
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECEEHHHHHHHHHHHHCCCEEEEEECCCCHHCCCHHHHHHHCCCCC-HHCCCCCCCC
T ss_conf 899999988764146662599960100677899998761351289996664200011045544301210-0101431123
Q ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHH--CCCC
Q ss_conf 34547567888999669999413889999452209999359999950898999999999999999999851000--0489
Q 000810 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK--AQNI 765 (1272)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~~K~~L~~~v~g~~~--~~~~ 765 (1272)
|+|+||+.|++||+||++|||..+.||+||+||+||+++|.||+|++.||+|++|++++..|..+...+++..+ ...+
T Consensus 149 g~Glnl~~a~~vi~~~~~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~~~~Tiee~i~~~~~~K~~~~~~~~~~~~~~~~~~ 228 (244)
T d1z5za1 149 GFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITEL 228 (244)
T ss_dssp CCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTGGGGTTHHHHTS
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHCCEEEECCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCC
T ss_conf 56621120014320471244677765425015649997259999861899999999999999999999871873545359
Q ss_pred CHHHHHHHHHH
Q ss_conf 99999999982
Q 000810 766 NQEELDDIIRY 776 (1272)
Q Consensus 766 ~~~el~~ll~~ 776 (1272)
+.+++.++|..
T Consensus 229 ~~~~l~~l~~~ 239 (244)
T d1z5za1 229 STEELRKVIEL 239 (244)
T ss_dssp CHHHHHHHHSC
T ss_pred CHHHHHHHHCC
T ss_conf 99999999746
No 5
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.90 E-value=1e-24 Score=190.42 Aligned_cols=198 Identities=15% Similarity=0.214 Sum_probs=143.8
Q ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 11999604998505899999999999999999999328960269999999999817865345889995460699999884
Q 000810 526 KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLE 605 (1272)
Q Consensus 526 ~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~ 605 (1272)
+.|||+....++|+|++.|+..|+.+.......+................+...+.++.. ........+.......
T Consensus 1 k~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~i~~~ 76 (200)
T d2fwra1 1 KHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERA----YEALRAWEEARRIAFN 76 (200)
T ss_dssp CCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSS----STTTHHHHHHHHHHHS
T ss_pred CCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHH----HHHHHHHHHHHHHHHC
T ss_conf 948891799999569999999999999999999985342010368899999996479778----9999878999998619
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
++.|+..|.+++.+. .+.|+||||++..+++.|...|. ...++|.++..+|+.+++.|+++... +|++|+
T Consensus 77 ~~~K~~~l~~ll~~~--~~~k~lvf~~~~~~~~~l~~~l~-----~~~i~g~~~~~~R~~~l~~F~~~~~~---vLv~~~ 146 (200)
T d2fwra1 77 SKNKIRKLREILERH--RKDKIIIFTRHNELVYRISKVFL-----IPAITHRTSREEREEILEGFRTGRFR---AIVSSQ 146 (200)
T ss_dssp CSHHHHHHHHHHHHT--SSSCBCCBCSCHHHHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHSSCS---BCBCSS
T ss_pred CHHHHHHHHHHHHHC--CCCCEEEEECCHHHHHHHHHHCC-----CCEEECCCCHHHHHHHHHHHHCCCEE---EEEECC
T ss_conf 488999999999967--79807999475999999876338-----55255799999999999886348703---543021
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC-CEEEEEEEECCC
Q ss_conf 3334547567888999669999413889999452209999-359999950898
Q 000810 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k-~V~VyrLit~~T 737 (1272)
++++||||+.|++||++|++|||..++|++||++|+||.+ .+.||.||++||
T Consensus 147 ~~~~Gidl~~~~~vi~~~~~~s~~~~~Q~iGR~~R~~~~k~~~~i~~~v~~~T 199 (200)
T d2fwra1 147 VLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 199 (200)
T ss_dssp CCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred HHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
T ss_conf 02102579988889996799799999999874487999986799999952999
No 6
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.85 E-value=2e-20 Score=159.72 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=110.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHH
Q ss_conf 7898888999928899999999983317985699908998099999999999840899967999667-128999999998
Q 000810 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 276 ~~P~~~~~~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
..|.+-...+|||||.++++++ .++.+++|+++||+|||++++.++..+ ..++|||||. +++.||.++|.+
T Consensus 61 ~~~~~~~~~~Lr~yQ~eav~~~----~~~~~~ll~~~tG~GKT~~a~~~~~~~----~~~~Liv~p~~~L~~q~~~~~~~ 132 (206)
T d2fz4a1 61 PTPYFDAEISLRDYQEKALERW----LVDKRGCIVLPTGSGKTHVAMAAINEL----STPTLIVVPTLALAEQWKERLGI 132 (206)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHH----TTTSEEEEEESSSTTHHHHHHHHHHHS----CSCEEEEESSHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCCCHHHHHHHHHH----HHCCCCEEEECCCCCCEEHHHHHHHHH----CCCEEEEECCCCHHHHHHHHHHH
T ss_conf 7877789998499999999999----967990999578998264377678774----67245787242248999999986
Q ss_pred HCCCCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 87999099997572577899985202799902221013675321222223555399901888873110137874125870
Q 000810 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIV 434 (1272)
Q Consensus 355 ~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIi 434 (1272)
|.+. .+..+.|... ...++++++|+.+......+.. .|++||+
T Consensus 133 ~~~~-~~~~~~~~~~-----------------------------------~~~~i~i~t~~~~~~~~~~~~~-~~~lvIi 175 (206)
T d2fz4a1 133 FGEE-YVGEFSGRIK-----------------------------------ELKPLTVSTYDSAYVNAEKLGN-RFMLLIF 175 (206)
T ss_dssp GCGG-GEEEESSSCB-----------------------------------CCCSEEEEEHHHHHHTHHHHTT-TCSEEEE
T ss_pred HCCC-CHHHCCCCCC-----------------------------------CCCCCCCCEEHHHHHHHHHHCC-CCCEEEE
T ss_conf 1551-1110146532-----------------------------------1021001232255553676577-5779999
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 54433578111899999820025578970568
Q 000810 435 DEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTP 466 (1272)
Q Consensus 435 DEaHrlKn~~s~~~~~l~~l~~~~rllLTGTP 466 (1272)
||||++++. ...+.+..+.+.++|+||||+
T Consensus 176 DEaH~~~a~--~~~~i~~~~~~~~~lgLTATl 205 (206)
T d2fz4a1 176 DEVHHLPAE--SYVQIAQMSIAPFRLGLTATF 205 (206)
T ss_dssp ECSSCCCTT--THHHHHHTCCCSEEEEEEESC
T ss_pred ECCEECCCH--HHHHHHHCCCCCCEEEEECCC
T ss_conf 898217837--999998506898489995589
No 7
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.84 E-value=5.9e-20 Score=156.37 Aligned_cols=134 Identities=16% Similarity=0.304 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC--------HHHHHHHHHHHHCCC
Q ss_conf 42127999999999999--70862899821222699999998727980899957789--------899999999971269
Q 000810 605 ESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVG--------GAERQIRIDRFNAKN 674 (1272)
Q Consensus 605 ~~SgKl~~L~klL~~l~--~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~--------~~~Rq~~Id~Fn~~~ 674 (1272)
..++|+..|.++|..+. ..++++||||++..+++.+.+.|...++++..++|... ..+|+.+++.|+++.
T Consensus 140 ~~~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~ 219 (286)
T d1wp9a2 140 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE 219 (286)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHCHHHHHHHHHHHHCCC
T ss_conf 78828999999999999718998489996718867999999997699648860566433420102288999999987699
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 9942899624533345475678889996699994138899994522099993599999508989999999
Q 000810 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1272)
Q Consensus 675 s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~ 744 (1272)
. .+|++|+++++|||++.|++||+||++|||..++|++||+.| .+++.+|.|++.+|+||.++-
T Consensus 220 ~---~vLv~T~~~~~Gld~~~~~~Vi~~d~~~~~~~~~Qr~GR~gR---~~~~~~~~l~~~~~~ee~~~~ 283 (286)
T d1wp9a2 220 F---NVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGR---HMPGRVIILMAKGTRDEAYYW 283 (286)
T ss_dssp C---SEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCS---CCCSEEEEEEETTSHHHHHHH
T ss_pred C---CEEEECCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHCCC---CCCCEEEEEEECCCHHHHHHH
T ss_conf 8---299971440203668889989995899898999999985787---999889999838988999886
No 8
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.82 E-value=8.9e-20 Score=155.08 Aligned_cols=163 Identities=12% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCC--E
Q ss_conf 99928899999999983317985699908998099999999999840899967999667-12899999999887999--0
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~--~ 360 (1272)
.+||+||.++++.+ ..+.++||..+||+|||+++++++..+......++|||||. +++.||..+|.+|.... .
T Consensus 112 ~~~rdyQ~~av~~~----l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~ 187 (282)
T d1rifa_ 112 IEPHWYQKDAVFEG----LVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCCHHHHHHHHHH----HHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CCCCHHHHHHHHHH----HHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 65646777877999----85497216887115830788999998653256328999767225789999998750365345
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCCC
Q ss_conf 99997572577899985202799902221013675321222223555399901888873110137874125870544335
Q 000810 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL 440 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaHrl 440 (1272)
+....+.... ........+++++|++.+......+. -.|++||+||||++
T Consensus 188 ~~~~~~g~~~-----------------------------~~~~~~~~~i~i~t~qs~~~~~~~~~-~~f~~VIvDEaH~~ 237 (282)
T d1rifa_ 188 IKKIGGGASK-----------------------------DDKYKNDAPVVVGTWQTVVKQPKEWF-SQFGMMMNDECHLA 237 (282)
T ss_dssp EEECSTTCSS-----------------------------TTCCCTTCSEEEECHHHHTTSCGGGG-GGEEEEEEETGGGC
T ss_pred CEEECCEECC-----------------------------CCCCCCCCEEEEEEEEHHHHHCCCCC-CCCCEEEEECCCCC
T ss_conf 3034020025-----------------------------65233232699986403222021005-78879999899788
Q ss_pred CCCCHHHHHHHHHC-CCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 78111899999820-02557897056899998899999984237
Q 000810 441 KNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 441 Kn~~s~~~~~l~~l-~~~~rllLTGTPlqNn~~EL~~ll~fL~p 483 (1272)
++. .....+..+ .+.+|++|||||-...... |.+..++.|
T Consensus 238 ~a~--~~~~il~~~~~~~~rlGlTaT~~~~~~~~-~~l~g~~Gp 278 (282)
T d1rifa_ 238 TGK--SISSIISGLNNCMFKFGLSGSLRDGKANI-MQYVGMFGE 278 (282)
T ss_dssp CHH--HHHHHTTTCTTCCEEEEECSSCCTTSTTH-HHHHHHHCE
T ss_pred CCH--HHHHHHHHCCCCCEEEEEEEECCCCCCCE-EEEEEECCC
T ss_conf 832--09999974618896999996159987344-898420677
No 9
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.77 E-value=1.4e-17 Score=139.32 Aligned_cols=137 Identities=18% Similarity=0.256 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 42127999999999999708628998212226999999987279808999577898999999999712699942899624
Q 000810 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlST 684 (1272)
..+.|+..|.++|..+ .+.|+||||.+..+.+.|.++|...|+++..++|+++..+|..+++.|+++... +|++|
T Consensus 10 ~~~~K~~~L~~ll~~~--~~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~---iLv~T 84 (168)
T d1t5ia_ 10 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRR---ILVAT 84 (168)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEES
T ss_pred CHHHHHHHHHHHHHHC--CCCEEEEEEEEEECCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE---EEECC
T ss_conf 7599999999999838--998199998034411013334301244432111222102222112211122211---44123
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 53334547567888999669999413889999452209999359999950898999999999999
Q 000810 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1272)
Q Consensus 685 ragg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~~K 749 (1272)
.+++.|||++.+++||+||++|||..++|++||++|.|++..+ +.|++. .-|.+++....++
T Consensus 85 ~~~~~Gid~~~~~~vi~~~~p~~~~~yiqr~GR~gR~g~~g~~--i~l~~~-~~~~~~~~~i~~~ 146 (168)
T d1t5ia_ 85 NLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA--ITFVSD-ENDAKILNDVQDR 146 (168)
T ss_dssp SCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEE--EEEECS-HHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEE--EEEECC-HHHHHHHHHHHHH
T ss_conf 3011001204413443221132214576542231528985189--999884-6799999999999
No 10
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.76 E-value=6.1e-18 Score=141.93 Aligned_cols=135 Identities=19% Similarity=0.272 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEC
Q ss_conf 42127999999999999708628998212226999999987279808999577898999999999712699942899624
Q 000810 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 605 ~~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlST 684 (1272)
....|+..|.++|... .+.|+||||+...+++.|..+|...|+.+..++|.++..+|..++..|..+... +|++|
T Consensus 15 ~~~~K~~~L~~ll~~~--~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~---ilv~T 89 (171)
T d1s2ma2 15 EERQKLHCLNTLFSKL--QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVR---TLVCS 89 (171)
T ss_dssp CGGGHHHHHHHHHHHS--CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSS---EEEES
T ss_pred CHHHHHHHHHHHHHHC--CCCCEEEEEEEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC---CCCCH
T ss_conf 8899999999999848--987659997224135676776501334433343332114566553211368631---10120
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 5333454756788899966999941388999945220999935999995089899999999999
Q 000810 685 RAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1272)
Q Consensus 685 ragg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~~ 748 (1272)
.+++.|||++.+++||+||+||||..++|+.||++|.|+... ++.|++.+ |..++....+
T Consensus 90 d~~~~Gid~~~v~~VI~~d~p~~~~~y~qr~GR~gR~g~~g~--~i~~v~~~--e~~~~~~i~~ 149 (171)
T d1s2ma2 90 DLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL--AINLINWN--DRFNLYKIEQ 149 (171)
T ss_dssp SCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEE--EEEEECGG--GHHHHHHHHH
T ss_pred HHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCE--EEEEECHH--HHHHHHHHHH
T ss_conf 176541046624899964876027778777553141799617--99985789--9999999999
No 11
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.74 E-value=1.4e-16 Score=132.33 Aligned_cols=167 Identities=16% Similarity=0.174 Sum_probs=115.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCC--CCE
Q ss_conf 99928899999999983317985699908998099999999999840899967999667-128999999998879--990
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p--~~~ 360 (1272)
.++|+||.++++++ .+.++|++.+||+|||++++.++........+++|||+|. +++.||.++|.++++ ..+
T Consensus 8 ~~pr~~Q~~~~~~~-----~~~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~ 82 (200)
T d1wp9a1 8 IQPRIYQEVIYAKC-----KETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (200)
T ss_dssp HCCCHHHHHHHHHG-----GGSCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCHHHHHHHHHH-----HCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 89889999999999-----6399699918997288999999999997069818997370577778899999863355420
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEEEECCCC
Q ss_conf 99997572577899985202799902221013675321222223555399901888873110--1378741258705443
Q 000810 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~vIiDEaH 438 (1272)
+..+++.......... ....+++++|++.+..... .+....+++||+||||
T Consensus 83 v~~~~~~~~~~~~~~~---------------------------~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H 135 (200)
T d1wp9a1 83 IVALTGEKSPEERSKA---------------------------WARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAH 135 (200)
T ss_dssp EEEECSCSCHHHHHHH---------------------------HHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGG
T ss_pred EEEEECCCCHHHHHHH---------------------------HHCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEHH
T ss_conf 1342036645677776---------------------------5114222343202577876313311566618998621
Q ss_pred CCCCCCHHHHHHHHH---CCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 357811189999982---002557897056899998899999984237
Q 000810 439 RLKNKDSKLFSSLKQ---YSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 439 rlKn~~s~~~~~l~~---l~~~~rllLTGTPlqNn~~EL~~ll~fL~p 483 (1272)
.+.+..+........ ....+.+++||||- +...++..++..+..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~l~~SATp~-~~~~~~~~~~~~l~~ 182 (200)
T d1wp9a1 136 RAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGI 182 (200)
T ss_dssp GCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTC
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCEEEEEECCC-CCHHHHHHHHHCCCC
T ss_conf 13122168999999986589985799996179-739999999846995
No 12
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.73 E-value=3e-17 Score=137.00 Aligned_cols=262 Identities=15% Similarity=0.137 Sum_probs=161.5
Q ss_pred HCCCCCEEEEECCCCHHHHHHH-HHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Q ss_conf 3179856999089980999999-99999840899967999667-128999999998879990999975725778999852
Q 000810 301 WSKQTHVILADEMGLGKTIQSI-AFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYE 378 (1272)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqai-a~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e 378 (1272)
+.++.++|+...+|.|||+.++ +++......+ ..+||++|+ .+..||.++|.............+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~-~~~lvi~Ptr~La~q~~~~l~~~~~~~~~~~~~~------------ 72 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRG-LRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRA------------ 72 (305)
T ss_dssp SSTTCEEEECCCTTSSTTTTHHHHHHHHHHHHT-CCEEEEESSHHHHHHHHHHTTTSCCBCCC-----------------
T ss_pred HHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEEE------------
T ss_conf 646994999979999787999999999987269-9899982389999999999854875211137850------------
Q ss_pred HCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCHHHHHHHHHC---
Q ss_conf 0279990222101367532122222355539990188887311013-787412587054433578111899999820---
Q 000810 379 FYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL-KPIKWQCMIVDEGHRLKNKDSKLFSSLKQY--- 454 (1272)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L-~~~~w~~vIiDEaHrlKn~~s~~~~~l~~l--- 454 (1272)
.......++++|+..+......- ....++++|+||+|.+-.........+..+
T Consensus 73 -----------------------~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~ 129 (305)
T d2bmfa2 73 -----------------------EHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM 129 (305)
T ss_dssp --------------------------CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHH
T ss_pred -----------------------CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf -----------------------125765301377489999984585315400898530111252057888999984166
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf 02557897056899998899999984237998995889999830213999999999720246777776673119996049
Q 000810 455 STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKEL 534 (1272)
Q Consensus 455 ~~~~rllLTGTPlqNn~~EL~~ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~ 534 (1272)
.....+++||||..... .+. ....+....
T Consensus 130 ~~~~~v~~SAT~~~~~~-------------~~~--------------------------------------~~~~~~~~~ 158 (305)
T d2bmfa2 130 GEAAGIFMTATPPGSRD-------------PFP--------------------------------------QSNAPIMDE 158 (305)
T ss_dssp TSCEEEEECSSCTTCCC-------------SSC--------------------------------------CCSSCEEEE
T ss_pred CCCEEEEEECCCCCCEE-------------EEC--------------------------------------CCCCCCEEE
T ss_conf 53138994157876433-------------402--------------------------------------347861279
Q ss_pred EEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98505899999999999999999999328960269999999999817865345889995460699999884212799999
Q 000810 535 ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLD 614 (1272)
Q Consensus 535 ~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~ 614 (1272)
...+.. .. ...
T Consensus 159 --~~~~~~-------------------~~-----------------------------~~~------------------- 169 (305)
T d2bmfa2 159 --EREIPE-------------------RS-----------------------------WNS------------------- 169 (305)
T ss_dssp --ECCCCC-------------------SC-----------------------------CSS-------------------
T ss_pred --EEECCH-------------------HH-----------------------------HHH-------------------
T ss_conf --986158-------------------88-----------------------------999-------------------
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999997086289982122269999999872798089995778989999999997126999428996245333454756
Q 000810 615 KMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLA 694 (1272)
Q Consensus 615 klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~ 694 (1272)
.+..+...+.++|||+......+.+...|...++.+..++|.+....+ ..|.+ +...++++|.+.+.|+|+
T Consensus 170 -~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~---~~~~~lvaT~~~~~G~~~- 240 (305)
T d2bmfa2 170 -GHEWVTDFKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRT---NDWDFVVTTDISEMGANF- 240 (305)
T ss_dssp -CCHHHHSSCSCEEEECSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGT---SCCSEEEECGGGGTTCCC-
T ss_pred -HHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCHHHHH----HHHHC---CCHHHHHHHHHHHHCCCC-
T ss_conf -999999607998999630999999999998679989995783847777----54310---001135556788725788-
Q ss_pred CCCEEE----------EECC----------CCCHHHHHHHHHHHHHCCCCCCE
Q ss_conf 788899----------9669----------99941388999945220999935
Q 000810 695 TADTVI----------IYDS----------DWNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 695 ~Ad~VI----------i~D~----------dWNP~~d~Qa~gRahRiGQ~k~V 727 (1272)
.++.|| .+|. +-++..++|+.||+.|.|+....
T Consensus 241 ~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~ 293 (305)
T d2bmfa2 241 KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293 (305)
T ss_dssp CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCE
T ss_pred CCCEEEECCCCEEEEEECCCCCCEEEECCCCCCHHHHHHHHCCCCCCCCCCEE
T ss_conf 84089975874146573389876388044569988983241186828999269
No 13
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.72 E-value=7.3e-17 Score=134.22 Aligned_cols=134 Identities=19% Similarity=0.329 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.++|.. .+.++||||+...+++.|..+|...|+....++|.++..+|..+++.|..+... +|++|.
T Consensus 13 ~~~K~~~L~~ll~~---~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~---ilv~T~ 86 (155)
T d1hv8a2 13 ENERFEALCRLLKN---KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIR---ILIATD 86 (155)
T ss_dssp GGGHHHHHHHHHCS---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSS---EEEECT
T ss_pred HHHHHHHHHHHHCC---CCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCE---EEEEHH
T ss_conf 39999999999726---999899997944899888765233432222333310011345666554121112---553036
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 3334547567888999669999413889999452209999359999950898999999999999
Q 000810 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~~K 749 (1272)
++++|||++.+++||+||+||||..++|+.||+.|.|+...+ +-|+... |+.++....++
T Consensus 87 ~~~~Gid~~~v~~Vi~~d~p~~~~~y~qr~GR~gR~g~~g~~--i~~~~~~--d~~~~~~i~~~ 146 (155)
T d1hv8a2 87 VMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKA--ISIINRR--EYKKLRYIERA 146 (155)
T ss_dssp THHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEE--EEEECTT--SHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEE--EEEECHH--HHHHHHHHHHH
T ss_conf 776543221276799964999999999887763747997369--9998668--99999999999
No 14
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.70 E-value=2.2e-16 Score=130.88 Aligned_cols=125 Identities=20% Similarity=0.289 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.+++..+ .+.++||||++..+++.|...|...++....++|.++..+|..+++.|..+... +|++|.
T Consensus 11 ~e~K~~~L~~ll~~~--~~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~---iLv~Td 85 (162)
T d1fuka_ 11 EEYKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSR---ILISTD 85 (162)
T ss_dssp GGGHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEEEG
T ss_pred CHHHHHHHHHHHHHC--CCCCEEEEEEEECHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCC---EEECCC
T ss_conf 378999999999848--988589999887069999988865495599951677523677899987640364---565156
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 3334547567888999669999413889999452209999359999950898
Q 000810 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~T 737 (1272)
+++.|||++.+++||+||+||||..++|+.||+.|.|+... ++.|++...
T Consensus 86 v~~rGiDi~~v~~VI~~d~P~~~~~yihR~GR~gR~g~~g~--~i~~~~~~d 135 (162)
T d1fuka_ 86 LLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV--AINFVTNED 135 (162)
T ss_dssp GGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CE--EEEEEETTT
T ss_pred CCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCE--EEEECCHHH
T ss_conf 23446557775089993451467788765014454798647--999817999
No 15
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=5.2e-16 Score=128.12 Aligned_cols=130 Identities=18% Similarity=0.302 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 12799999999999970862899821222699999998727980899957789899999999971269994289962453
Q 000810 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTra 686 (1272)
..|+..|.+++... .+.++||||.....++.+..+|...|+++..++|.++..+|..+++.|.++... +|++|.+
T Consensus 19 ~~K~~~L~~ll~~~--~~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~---iLv~Td~ 93 (168)
T d2j0sa2 19 EWKFDTLCDLYDTL--TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASR---VLISTDV 93 (168)
T ss_dssp THHHHHHHHHHHHH--TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSC---EEEECGG
T ss_pred HHHHHHHHHHHHHC--CCCCEEEEEEEHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC---EEECCCH
T ss_conf 99999999999847--877639996058887888877663044313331122578999999998638840---7741441
Q ss_pred CCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHH
Q ss_conf 33454756788899966999941388999945220999935999995089899999999
Q 000810 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1272)
Q Consensus 687 gg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~ 745 (1272)
++.|||++.+++||+||+||++..++|++||+.|.|+... ++-|++.. |..++..
T Consensus 94 ~~rGiDi~~v~~VIn~d~P~~~~~yihR~GR~gR~g~~G~--~i~~~~~~--d~~~~~~ 148 (168)
T d2j0sa2 94 WARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV--AINFVKND--DIRILRD 148 (168)
T ss_dssp GSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEE--EEEEEEGG--GHHHHHH
T ss_pred HCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCCCCE--EEEEECHH--HHHHHHH
T ss_conf 0056553576568993377678788766104452699747--99997789--9999999
No 16
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=3.1e-15 Score=122.55 Aligned_cols=124 Identities=19% Similarity=0.273 Sum_probs=109.1
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCC
Q ss_conf 12799999999999970862899821222699999998727980899957789899999999971269994289962453
Q 000810 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTra 686 (1272)
..|+..|.+++... ...++|||+++....+.|..+|...|+++..++|.++..+|..++++|..+... +|++|.+
T Consensus 17 ~~K~~~L~~ll~~~--~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g~~~---ilv~Td~ 91 (168)
T d2rb4a1 17 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK---VLITTNV 91 (168)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCS---EEEECCS
T ss_pred HHHHHHHHHHHHHC--CCCCEEEECCHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHHHHCCCCEE---EEECHHH
T ss_conf 89999999999867--988579971888999999999986477621023311567778776331379600---3411245
Q ss_pred CCCCCCCCCCCEEEEECCCCC------HHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 334547567888999669999------413889999452209999359999950898
Q 000810 687 GGLGINLATADTVIIYDSDWN------PHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 687 gg~GINL~~Ad~VIi~D~dWN------P~~d~Qa~gRahRiGQ~k~V~VyrLit~~T 737 (1272)
++.|||++.+++||+||.||+ +..++|++||+.|.|++ ..+|.|++.+.
T Consensus 92 ~~~Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~~--g~~i~~~~~~d 146 (168)
T d2rb4a1 92 CARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 146 (168)
T ss_dssp CCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred HHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCC--EEEEEEECHHH
T ss_conf 43211046642798525898644558999998886433668994--48999976899
No 17
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.61 E-value=1.1e-14 Score=118.57 Aligned_cols=123 Identities=20% Similarity=0.226 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.++|.. ..+.++|||++.....+.|..+|...|+....++|+++..+|..+++.|..+... +|++|.
T Consensus 14 ~~~k~~~L~~~l~~--~~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~---ilvaTd 88 (200)
T d1oywa3 14 KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQ---IVVATV 88 (200)
T ss_dssp CSSHHHHHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCS---EEEECT
T ss_pred CCCHHHHHHHHHHH--CCCCCEEEEEEEEHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCE---EEEECC
T ss_conf 87689999999985--6999889998223116776443244785357753887177789999887413430---787402
Q ss_pred CCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEEC
Q ss_conf 33345475678889996699994138899994522099993599999508
Q 000810 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~ 735 (1272)
++|.|||++.+++||+||+|+|+..++|++||+.|.|+...+.. |++.
T Consensus 89 ~~~~GiD~p~v~~VI~~~~P~~~~~y~qr~GR~gR~g~~g~ai~--~~~~ 136 (200)
T d1oywa3 89 AFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML--FYDP 136 (200)
T ss_dssp TSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE--EECH
T ss_pred HHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEE--ECCH
T ss_conf 34531688788899987775116889887545313777725877--5178
No 18
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.55 E-value=3e-13 Score=108.34 Aligned_cols=119 Identities=18% Similarity=0.196 Sum_probs=98.9
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 99999999970862899821222699999998727980899957789899999999971269994289962453334547
Q 000810 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGIN 692 (1272)
Q Consensus 613 L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GIN 692 (1272)
|...+.+..+.++++|||+......+.+..+|...|++...++|.++..+|..+++.|.++... +|++|.+++.|||
T Consensus 20 ll~~i~~~~~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~---vLVaTdv~~rGiD 96 (181)
T d1t5la2 20 LIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLGKYD---VLVGINLLREGLD 96 (181)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHTSCS---EEEESCCCSSSCC
T ss_pred HHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCC---EEEEHHHHHCCCC
T ss_conf 9999999996298289996103466788887876794046741786388999999999789988---8976247771389
Q ss_pred CCCCCEEEEECCCC-----CHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf 56788899966999-----9413889999452209999359999950898
Q 000810 693 LATADTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 693 L~~Ad~VIi~D~dW-----NP~~d~Qa~gRahRiGQ~k~V~VyrLit~~T 737 (1272)
++.+++||+||.|- ++..++|+.||+.|.|+. .+..+....+
T Consensus 97 ip~v~~VI~~d~p~~~~~~s~~~yi~R~GRagR~g~~---~~~~~~~~~~ 143 (181)
T d1t5la2 97 IPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANG---HVIMYADTIT 143 (181)
T ss_dssp CTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTTC---EEEEECSSCC
T ss_pred CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCC---EEEEECCHHH
T ss_conf 9997889995699645543589999998762456674---5674021145
No 19
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.55 E-value=2.8e-17 Score=137.27 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=86.6
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 98876689877764067899999999999999973027999987533420123687899876978899999999762167
Q 000810 1023 DSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYG 1102 (1272)
Q Consensus 1023 d~~~~~~~i~k~~~k~~~vl~ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~~i~k~Gyg 1102 (1272)
||++|++.|++|+.+++.. .....+|+.||+.|. +| + .++.++|+ +++++.||+|||||||||+|+||||
T Consensus 1 D~ek~i~~IE~gE~ki~k~---~~~~~~l~~Ki~~y~-~P---~--~eL~i~y~-~nk~k~yteeEDRfLl~~~~~~G~~ 70 (128)
T d1ofcx2 1 DIERIMGQIERGEGKIQRR---LSIKKALDQKMSRYR-AP---F--HQLRLQYG-NNKGKNYTEIEDRFLVCMLHKLGFD 70 (128)
T ss_dssp THHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHTCS-SH---H--HHCCCCCT-TCCCSSCCHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC-CH---H--HHHHHHCC-CCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9789999999899999999---999999999999833-96---9--88012125-6678766789999999999996689
Q ss_pred C---HHHHHCC--------CCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 0---5775308--------2358369988883599877889
Q 000810 1103 R---WQAIVDD--------KDLKVQEVICQELNLPFINLPV 1132 (1272)
Q Consensus 1103 ~---we~Ik~D--------~~l~l~~~i~~e~~~~~~~~~~ 1132 (1272)
+ ||.|+.+ +||++++++.+||++||.+|+.
T Consensus 71 ~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (128)
T d1ofcx2 71 KENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLIT 111 (128)
T ss_dssp STTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 73199999999974953120257616999999999999999
No 20
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.53 E-value=2.5e-13 Score=108.97 Aligned_cols=124 Identities=16% Similarity=0.221 Sum_probs=99.5
Q ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCC
Q ss_conf 99999997086289982122269999999872798089995778989999999997126999428996245333454756
Q 000810 615 KMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLA 694 (1272)
Q Consensus 615 klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~ 694 (1272)
+-+.+..+.|.++||||....+.+.|..+|...|++...++|.++..+|+.++++|.++... +|++|.++++|||++
T Consensus 22 ~~i~~~~~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~---vLVaT~v~~~GiDip 98 (174)
T d1c4oa2 22 EGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYD---CLVGINLLREGLDIP 98 (174)
T ss_dssp HHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCS---EEEESCCCCTTCCCT
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCEE---EEEEEEEEEEECCCC
T ss_conf 99999986598389998230379999999986597258986155418899999999779869---999635642113677
Q ss_pred CCCEEEEECCCC-----CHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHH
Q ss_conf 788899966999-----941388999945220999935999995089899999
Q 000810 695 TADTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERM 742 (1272)
Q Consensus 695 ~Ad~VIi~D~dW-----NP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I 742 (1272)
.+++||+||++- ++..++|+.||+.|-|. ..+.++..-..+++...|
T Consensus 99 ~V~~Vi~~~~~~~~~~~~~~~~iq~~GR~gR~~~-g~~~~~~~~~~~~~~~~i 150 (174)
T d1c4oa2 99 EVSLVAILDADKEGFLRSERSLIQTIGRAARNAR-GEVWLYADRVSEAMQRAI 150 (174)
T ss_dssp TEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT-CEEEEECSSCCHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CEEEEEECCCCHHHHHHH
T ss_conf 7738998036544553016779988614430478-706896267778999999
No 21
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.51 E-value=1.9e-13 Score=109.81 Aligned_cols=163 Identities=21% Similarity=0.256 Sum_probs=107.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCC-CEE
Q ss_conf 99928899999999983317985699908998099999999999840899967999667-1289999999988799-909
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ-MNV 361 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~-~~v 361 (1272)
.+|+|||.+++..+ .++.++|++.++|.|||..++..+...... .+++|+|+|. +++.||.+.+.+|.+. .++
T Consensus 24 ~~l~~~Q~~ai~~l----~~~~~~il~apTGsGKT~~a~l~i~~~~~~-~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~v 98 (202)
T d2p6ra3 24 EELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK-GGKSLYVVPLRALAGEKYESFKKWEKIGLRI 98 (202)
T ss_dssp -CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEEESSHHHHHHHHHHHTTTTTTTCCE
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHHHHHHC-CCCCEEECCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999----849998998689985117899999987622-5760331662789999999999986324431
Q ss_pred EEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCC--CCCCEEEEECCCCC
Q ss_conf 9997572577899985202799902221013675321222223555399901888873110137--87412587054433
Q 000810 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLK--PIKWQCMIVDEGHR 439 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~--~~~w~~vIiDEaHr 439 (1272)
..+.|....+. ......+++++++..+......-. -..+++||+||+|+
T Consensus 99 ~~~~~~~~~~~-----------------------------~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~ 149 (202)
T d2p6ra3 99 GISTGDYESRD-----------------------------EHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (202)
T ss_dssp EEECSSCBCCS-----------------------------SCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EEECCCCCCCC-----------------------------CCCCCCCEEEECCHHHHHHHHCCCHHHHHHHHCCCCHHHH
T ss_conf 00026743322-----------------------------1223221254010899888751100110322224658777
Q ss_pred CCCCC--HHHHHHHHHC---C-CCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 57811--1899999820---0-255789705689999889999998423799
Q 000810 440 LKNKD--SKLFSSLKQY---S-TRHRVLLTGTPLQNNLDELFMLMHFLDAGK 485 (1272)
Q Consensus 440 lKn~~--s~~~~~l~~l---~-~~~rllLTGTPlqNn~~EL~~ll~fL~p~~ 485 (1272)
+.+.. ......+..+ . ...+++||||- .|+.++ .+||....
T Consensus 150 ~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl--~n~~~~---~~~l~~~~ 196 (202)
T d2p6ra3 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATA--PNVTEI---AEWLDADY 196 (202)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC--TTHHHH---HHHTTCEE
T ss_pred HCCCCCCHHHHHHHHHHHHCCCCCCEEEECCCC--CCHHHH---HHHCCCCE
T ss_conf 535543137999999998659998389981788--759999---98708982
No 22
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.50 E-value=4.6e-13 Score=107.09 Aligned_cols=166 Identities=17% Similarity=0.198 Sum_probs=106.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCE--
Q ss_conf 99928899999999983317985699908998099999999999840899967999667-128999999998879990--
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMN-- 360 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~-- 360 (1272)
++++++|.+++..+ ..|.++++..+||+|||+.++..+..+...+ +.+|||+|+ .+..||.++|.+|+..+.
T Consensus 42 ~~p~~~Q~~~i~~~----l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~-~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~ 116 (237)
T d1gkub1 42 GEPRAIQKMWAKRI----LRKESFAATAPTGVGKTSFGLAMSLFLALKG-KRCYVIFPTSLLVIQAAETIRKYAEKAGVG 116 (237)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEECCCCBTSCSHHHHHHHHHHHHTTS-CCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99989999999999----7799779992689769999999999998745-838999444999999999999999984994
Q ss_pred ----EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf ----9999757257789998520279990222101367532122222355539990188887311013787412587054
Q 000810 361 ----VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1272)
Q Consensus 361 ----vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDE 436 (1272)
+..+.+........... .....++|+|+|++.+......+. .|++||+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~l------------------------~~~~~~~Ilv~Tp~~l~~~~~~~~--~~~~vVvDE 170 (237)
T d1gkub1 117 TENLIGYYHGRIPKREKENFM------------------------QNLRNFKIVITTTQFLSKHYRELG--HFDFIFVDD 170 (237)
T ss_dssp GGGSEEECCSSCCSHHHHHHH------------------------HSGGGCSEEEEEHHHHHHCSTTSC--CCSEEEESC
T ss_pred EEEEEEEEECCCCHHHHHHHH------------------------CCCCCCCEECCCHHHHHHHHHHCC--CCCEEEEEC
T ss_conf 699985542254123565554------------------------034444232268699997544347--788899999
Q ss_pred CCCCCCCCHHHHHHHHHC--C------------CCCEEEEECCCCCCCHHHHH-HHHHH
Q ss_conf 433578111899999820--0------------25578970568999988999-99984
Q 000810 437 GHRLKNKDSKLFSSLKQY--S------------TRHRVLLTGTPLQNNLDELF-MLMHF 480 (1272)
Q Consensus 437 aHrlKn~~s~~~~~l~~l--~------------~~~rllLTGTPlqNn~~EL~-~ll~f 480 (1272)
+|.+-.......+.+..+ . ....+++|||+-+.....++ .+++|
T Consensus 171 ~d~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~l~r~ll~f 229 (237)
T d1gkub1 171 VDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF 229 (237)
T ss_dssp HHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCC
T ss_pred HHHHHHCCCCHHHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 26664334214578886187399999986278888599990789945399999997489
No 23
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.34 E-value=6.5e-12 Score=98.84 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=104.5
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf 99928899999999983317985699908998099999999999840899967999667-12899999999887999099
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
.+++|||.+++.-+ ..|.++|+...+|+|||+.++..+.. ..+..++++|. .+..+|.+++..+.......
T Consensus 24 ~~~rp~Q~~ai~~~----l~g~~vlv~apTGsGKT~~~~~~~~~----~~~~~~~v~P~~~L~~q~~~~l~~~~~~~~~~ 95 (206)
T d1oywa2 24 QQFRPGQEEIIDTV----LSGRDCLVVMPTGGGKSLCYQIPALL----LNGLTVVVSPLISLMKDQVDQLQANGVAAACL 95 (206)
T ss_dssp SSCCTTHHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHH----SSSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCCCCCHHHHHHHH----CCCCEEEECCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf 99998999999999----86998899867889975231202554----26724786264066666899997635665322
Q ss_pred EEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH--HHCCCCCCCEEEEECCCCCC
Q ss_conf 9975725778999852027999022210136753212222235553999018888731--10137874125870544335
Q 000810 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d--~~~L~~~~w~~vIiDEaHrl 440 (1272)
............... ......+++++|+..+... ........+.++|+||||.+
T Consensus 96 ~~~~~~~~~~~~~~~------------------------~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~ 151 (206)
T d1oywa2 96 NSTQTREQQLEVMTG------------------------CRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCI 151 (206)
T ss_dssp CTTSCHHHHHHHHHH------------------------HHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGG
T ss_pred CCCCCCCCCHHHHHH------------------------HHCCCCEEEEEECHHHHCHHHCCCCHHHEEEEEEEEEEEEE
T ss_conf 111124520567788------------------------76288469997030110001024221002224300012565
Q ss_pred CCCCHH-------HHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCC
Q ss_conf 781118-------9999982002557897056899998899999984237
Q 000810 441 KNKDSK-------LFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 441 Kn~~s~-------~~~~l~~l~~~~rllLTGTPlqNn~~EL~~ll~fL~p 483 (1272)
...... .......+.....++||||+-..-..++...|.+-+|
T Consensus 152 ~~~~~~~~~~~~~~~~l~~~~~~~~ii~lSATl~~~v~~di~~~L~l~~p 201 (206)
T d1oywa2 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (206)
T ss_dssp CTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred ECCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHCCCCCC
T ss_conf 02266508999999999975899835999948997999999997699999
No 24
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.27 E-value=2.7e-11 Score=94.44 Aligned_cols=159 Identities=17% Similarity=0.206 Sum_probs=111.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCC--CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCC--
Q ss_conf 999288999999999833179--8569990899809999999999984089996799966712-89999999988799--
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQ-- 358 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~p~-- 358 (1272)
.+|.+-|..+++-+...+..+ .+.+|..++|+|||+.++..+......+ ..+++++|+.. ..|+...|.++++.
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-~q~~~m~Pt~~La~Qh~~~~~~~f~~~~ 160 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRRTVESFSKFN 160 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCC-CCEEEEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf 667803788899999876236753156663535566599999999988513-5505874047665789999988620123
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 90999975725778999852027999022210136753212222235553999018888731101378741258705443
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaH 438 (1272)
.++.+++|.......-..+.- ......+|+|.|+..+..+..+ . +..+|||||-|
T Consensus 161 ~~v~~l~~~~~~~~r~~~~~~----------------------~~~g~~~iiIGThsl~~~~~~f-~--~LglviiDEqH 215 (264)
T d1gm5a3 161 IHVALLIGATTPSEKEKIKSG----------------------LRNGQIDVVIGTHALIQEDVHF-K--NLGLVIIDEQH 215 (264)
T ss_dssp CCEEECCSSSCHHHHHHHHHH----------------------HHSSCCCEEEECTTHHHHCCCC-S--CCCEEEEESCC
T ss_pred CCCEEECCCCCHHHHHHHHHH----------------------HHCCCCCEEEEEHHHHCCCCCC-C--CCCEEEECCCC
T ss_conf 121110110136999999999----------------------9779979999653885489874-5--56225632421
Q ss_pred CCCCCCHHHHHHHH-HCCCCCEEEEECCCCCCCH
Q ss_conf 35781118999998-2002557897056899998
Q 000810 439 RLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNL 471 (1272)
Q Consensus 439 rlKn~~s~~~~~l~-~l~~~~rllLTGTPlqNn~ 471 (1272)
++.-... ..+. .-...+.|++||||+..++
T Consensus 216 ~fgv~Qr---~~l~~~~~~~~~l~~SATPiprtl 246 (264)
T d1gm5a3 216 RFGVKQR---EALMNKGKMVDTLVMSATPIPRSM 246 (264)
T ss_dssp CC--------CCCCSSSSCCCEEEEESSCCCHHH
T ss_pred CCCHHHH---HHHHHHCCCCCEEEEECCCCHHHH
T ss_conf 0024347---999971869998999798899999
No 25
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.26 E-value=4.9e-12 Score=99.74 Aligned_cols=133 Identities=18% Similarity=0.183 Sum_probs=78.8
Q ss_pred HHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Q ss_conf 33179856999089980999999999998408999679996671289999999988799909999757257789998520
Q 000810 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEF 379 (1272)
Q Consensus 300 ~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~ 379 (1272)
.+.++.++||..+||+|||++++..+..........++|++|...+.+|..+. .....+.........
T Consensus 3 ~l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~---~~~~~~~~~~~~~~~--------- 70 (140)
T d1yksa1 3 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEA---FHGLDVKFHTQAFSA--------- 70 (140)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH---TTTSCEEEESSCCCC---------
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH---HHHHHHHHCCCCCCC---------
T ss_conf 78759967998179988559999999997531385156531210688999987---532432201120001---------
Q ss_pred CCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHH-HHHCCCCCCCEEEEECCCCCCCCCCHHHH---HHHHHCC
Q ss_conf 2799902221013675321222223555399901888873-11013787412587054433578111899---9998200
Q 000810 380 YFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-DSASLKPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYS 455 (1272)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~-d~~~L~~~~w~~vIiDEaHrlKn~~s~~~---~~l~~l~ 455 (1272)
.......+...++..+.. ........+|++||+||||++........ ..+....
T Consensus 71 ----------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~ 128 (140)
T d1yksa1 71 ----------------------HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN 128 (140)
T ss_dssp ----------------------CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTT
T ss_pred ----------------------CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf ----------------------2233330024269999999841665464208997543346754399999999982579
Q ss_pred CCCEEEEECCC
Q ss_conf 25578970568
Q 000810 456 TRHRVLLTGTP 466 (1272)
Q Consensus 456 ~~~rllLTGTP 466 (1272)
..+.++|||||
T Consensus 129 ~~~~l~lTATP 139 (140)
T d1yksa1 129 ESATILMTATP 139 (140)
T ss_dssp SCEEEEECSSC
T ss_pred CCCEEEEECCC
T ss_conf 99989998299
No 26
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.25 E-value=3.5e-11 Score=93.62 Aligned_cols=126 Identities=19% Similarity=0.104 Sum_probs=81.5
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC-CCHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 17985699908998099999999999840899967999667-12899999999887999099997572577899985202
Q 000810 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~ 380 (1272)
.....+||...+|+|||++++.++. .....+||++|. .+..||.+.+..+........+.+..
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~----~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~------------ 69 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYA----AQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRT------------ 69 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHH----TTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE------------
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHH----HCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCC------------
T ss_conf 6788899996887799999999999----869939997676999999999999985202464300122------------
Q ss_pred CCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHH-HHHHHHHCCC---
Q ss_conf 799902221013675321222223555399901888873110137874125870544335781118-9999982002---
Q 000810 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSK-LFSSLKQYST--- 456 (1272)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaHrlKn~~s~-~~~~l~~l~~--- 456 (1272)
......++++++.......... .-.|++||+||+|++...... +...+..+..
T Consensus 70 ----------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~ 126 (136)
T d1a1va1 70 ----------------------ITTGSPITYSTYGKFLADGGCS-GGAYDIIICDECHSTDATSILGIGTVLDQAETAGA 126 (136)
T ss_dssp ----------------------ECCCCSEEEEEHHHHHHTTGGG-GCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTC
T ss_pred ----------------------CCCCCCEEEEEEEEECCCCCHH-HHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf ----------------------1134422788641000235302-41599999825553588789999999999987799
Q ss_pred CCEEEEECCC
Q ss_conf 5578970568
Q 000810 457 RHRVLLTGTP 466 (1272)
Q Consensus 457 ~~rllLTGTP 466 (1272)
...++|||||
T Consensus 127 ~~~l~~TATP 136 (136)
T d1a1va1 127 RLVVLATATP 136 (136)
T ss_dssp SEEEEEESSC
T ss_pred CCEEEEECCC
T ss_conf 7299992799
No 27
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.24 E-value=8.5e-10 Score=83.70 Aligned_cols=158 Identities=17% Similarity=0.199 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC--CEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC-CHHHHHHHHHHHCCCC-
Q ss_conf 9992889999999998331798--56999089980999999999998408999679996671-2899999999887999-
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQM- 359 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~--~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~~~~p~~- 359 (1272)
..|.+-|..+++-+......+. +.+|.-++|+|||..++..+......+ ..+++++|.. +..|+.+.|.++++.+
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g-~qv~~l~Pt~~La~Q~~~~~~~~~~~~~ 132 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWP 132 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-CEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC-CCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf 134604888999999998545766708983888772899999999999768-9569974688767999999999872479
Q ss_pred -EEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf -0999975725778999852027999022210136753212222235553999018888731101378741258705443
Q 000810 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 360 -~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaH 438 (1272)
++..+++..........+.- ......+|+|.|+..+..... --+..+|||||-|
T Consensus 133 ~~v~~l~~~~~~~~~~~~~~~----------------------~~~g~~~iviGths~l~~~~~---f~~LgLiIiDEeH 187 (233)
T d2eyqa3 133 VRIEMISRFRSAKEQTQILAE----------------------VAEGKIDILIGTHKLLQSDVK---FKDLGLLIVDEEH 187 (233)
T ss_dssp CCEEEESTTSCHHHHHHHHHH----------------------HHTTCCSEEEECTHHHHSCCC---CSSEEEEEEESGG
T ss_pred CEEEECCCCCCCHHHHHHHHH----------------------HHCCCCCEEEEEHHHHCCCCC---CCCCCCEEEECHH
T ss_conf 779763576531269999999----------------------967997889742023306776---5554630222312
Q ss_pred CCCCCCHHHHHHHHHC-CCCCEEEEECCCCCCC
Q ss_conf 3578111899999820-0255789705689999
Q 000810 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNN 470 (1272)
Q Consensus 439 rlKn~~s~~~~~l~~l-~~~~rllLTGTPlqNn 470 (1272)
+..-.. ...++.. ...+.+++||||+.-.
T Consensus 188 ~fg~kQ---~~~l~~~~~~~~~l~~SATPiprt 217 (233)
T d2eyqa3 188 RFGVRH---KERIKAMRANVDILTLTATPIPRT 217 (233)
T ss_dssp GSCHHH---HHHHHHHHTTSEEEEEESSCCCHH
T ss_pred HHHHHH---HHHHHHHCCCCCEEEEECCHHHHH
T ss_conf 332578---999996188998899965510999
No 28
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.17 E-value=1.4e-09 Score=82.07 Aligned_cols=152 Identities=14% Similarity=0.160 Sum_probs=104.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCC-CEEEEECC-CCHHHHHHHHHHHC--CCCE
Q ss_conf 99288999999999833179856999089980999999999998408999-67999667-12899999999887--9990
Q 000810 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQMN 360 (1272)
Q Consensus 285 ~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~-sll~qW~~E~~~~~--p~~~ 360 (1272)
++.|.|..++..+. ..+.+.|+...+|.|||+..+..+........+ ..||+||+ .+..|+.+.+..+. ...+
T Consensus 26 ~pt~iQ~~~ip~~l---~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~ 102 (208)
T d1hv8a1 26 KPTDIQMKVIPLFL---NDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 102 (208)
T ss_dssp SCCHHHHHHHHHHH---HTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHH---CCCCCEEEECHHCCCCCCEEECCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCCCEE
T ss_conf 99999999999998---499974644100344440020333211112467506998403332203345566650367707
Q ss_pred EEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH--HHCCCCCCCEEEEECCCC
Q ss_conf 999975725778999852027999022210136753212222235553999018888731--101378741258705443
Q 000810 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d--~~~L~~~~w~~vIiDEaH 438 (1272)
+..++|........... ...+|+|+|++.+... ...+.--...++|+||||
T Consensus 103 v~~~~g~~~~~~~~~~l---------------------------~~~~IlV~TP~~l~~~l~~~~~~~~~l~~lViDEad 155 (208)
T d1hv8a1 103 IAKIYGGKAIYPQIKAL---------------------------KNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 155 (208)
T ss_dssp EEEECTTSCHHHHHHHH---------------------------HTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEEEECCCCHHHHHHHC---------------------------CCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEECHH
T ss_conf 99852897869999860---------------------------899999988699999997699776668699998848
Q ss_pred CCCC--CCHHHHHHHHHCCCC-CEEEEECCC
Q ss_conf 3578--111899999820025-578970568
Q 000810 439 RLKN--KDSKLFSSLKQYSTR-HRVLLTGTP 466 (1272)
Q Consensus 439 rlKn--~~s~~~~~l~~l~~~-~rllLTGTP 466 (1272)
++-+ ....+.+.+..++.+ ..+++|||.
T Consensus 156 ~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT~ 186 (208)
T d1hv8a1 156 EMLNMGFIKDVEKILNACNKDKRILLFSATM 186 (208)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSC
T ss_pred HHHCCCCHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 7610887177999998589988599997027
No 29
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.17 E-value=5.8e-09 Score=77.73 Aligned_cols=175 Identities=14% Similarity=0.262 Sum_probs=114.8
Q ss_pred CCCCCCCCCCCCCCC------CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHH-HHHHHHHHHCC---------
Q ss_conf 334443478988889------99928899999999983317985699908998099999-99999984089---------
Q 000810 269 KEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER--------- 332 (1272)
Q Consensus 269 ~~~~~~~~~P~~~~~------~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~--------- 332 (1272)
..|..+.-.|..+.+ ..+.|.|..++..+ ..|.++++...+|.|||+.. +.++..+....
T Consensus 21 ~~F~~l~l~~~l~~~L~~~g~~~pt~iQ~~~ip~i----l~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~ 96 (238)
T d1wrba1 21 ENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAI----LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKT 96 (238)
T ss_dssp CSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CC
T ss_pred CCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----HCCCCEEEECCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCC
T ss_conf 89777798999999999879998989999983664----27997899877777751131999999997222111245677
Q ss_pred C-CCEEEEECC-CCHHHHHHHHHHHCCC--CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-967999667-1289999999988799--90999975725778999852027999022210136753212222235553
Q 000810 333 I-SPHLVVAPL-STLRNWEREFATWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFD 408 (1272)
Q Consensus 333 ~-~p~LIVvP~-sll~qW~~E~~~~~p~--~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 408 (1272)
. ...||+||+ .+..|..+++..+... +++....|........+.. ....|
T Consensus 97 ~~~~alil~pt~el~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------------~~~~~ 150 (238)
T d1wrba1 97 AYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV--------------------------QMGCH 150 (238)
T ss_dssp BCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH--------------------------SSCCS
T ss_pred CCCEEEEECCCHHHHCCHHEEEEECCCCCCCEEEEEECCCHHHHHHHHC--------------------------CCCCC
T ss_conf 7836999535144301001011100357882799994452035777640--------------------------36873
Q ss_pred EEEECHHHHHHHH--HCCCCCCCEEEEECCCCCCCC--CCHHHHHHHHHCC-----CCCEEEEECCCCCCCHHHH
Q ss_conf 9990188887311--013787412587054433578--1118999998200-----2557897056899998899
Q 000810 409 VLLTSYEMINLDS--ASLKPIKWQCMIVDEGHRLKN--KDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDEL 474 (1272)
Q Consensus 409 ViItSye~l~~d~--~~L~~~~w~~vIiDEaHrlKn--~~s~~~~~l~~l~-----~~~rllLTGTPlqNn~~EL 474 (1272)
|+|+|++.+.... ..+.-..+.++|+||||++-. ....+...+..+. ....+++||| +..++.+|
T Consensus 151 ivV~TP~~l~~~~~~~~~~l~~v~~lViDEaD~ll~~~f~~~i~~Il~~~~~~~~~~~Q~il~SAT-~~~~v~~l 224 (238)
T d1wrba1 151 LLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSAT-FPKEIQKL 224 (238)
T ss_dssp EEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESS-CCHHHHHH
T ss_pred EEECCHHHHHHHHCCCCEECCCCCEEEEEHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEE-CCHHHHHH
T ss_conf 440677887767726926526641244203445543213999999999843899899889999632-79899999
No 30
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.12 E-value=4e-09 Score=78.87 Aligned_cols=153 Identities=17% Similarity=0.190 Sum_probs=105.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHH-HHHHHCCCC-CEEEEECCCCH-HHHHHHHHHHC--CC
Q ss_conf 999288999999999833179856999089980999999999-998408999-67999667128-99999999887--99
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGERIS-PHLVVAPLSTL-RNWEREFATWA--PQ 358 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l-~~l~~~~~~-p~LIVvP~sll-~qW~~E~~~~~--p~ 358 (1272)
..+.|.|..++..+ ..|.+++....+|+|||+..+.-+ ..+...... ..||+||+.-+ .|-.+++.+++ ..
T Consensus 38 ~~pt~IQ~~aIp~i----l~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~ 113 (222)
T d2j0sa1 38 EKPSAIQQRAIKQI----IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 113 (222)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999----87998699757434145440454011003334674257755528888999999999847563
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHH--HCCCCCCCEEEEECC
Q ss_conf 909999757257789998520279990222101367532122222355539990188887311--013787412587054
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~--~~L~~~~w~~vIiDE 436 (1272)
+++..+.|........... ....+|+|+|+..+.... ..+.-..-.++|+||
T Consensus 114 i~~~~~~g~~~~~~~~~~l--------------------------~~~~~Ilv~TPgrl~~~~~~~~~~~~~l~~lVlDE 167 (222)
T d2j0sa1 114 VQCHACIGGTNVGEDIRKL--------------------------DYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDE 167 (222)
T ss_dssp CCEEEECTTSCHHHHHHHH--------------------------HHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred EEEEEEEECCCCHHHHHHH--------------------------CCCCEEEECCCCCHHHCCCCCCCCCCCCEEEEECC
T ss_conf 4588875112102467875--------------------------14873886798757761200103444230355422
Q ss_pred CCCCCCC--CHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 4335781--1189999982002-5578970568
Q 000810 437 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (1272)
Q Consensus 437 aHrlKn~--~s~~~~~l~~l~~-~~rllLTGTP 466 (1272)
||++-+. ...+...+..+.. ...+++|||-
T Consensus 168 aD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT~ 200 (222)
T d2j0sa1 168 ADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 200 (222)
T ss_dssp HHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred HHHHHHCCCHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 467652573999999999689888799999728
No 31
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.04 E-value=4.5e-09 Score=78.51 Aligned_cols=153 Identities=16% Similarity=0.133 Sum_probs=102.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH-HHHHHHHCCCC-CEEEEECCCCH-HHHHHHHHHHC---C
Q ss_conf 9992889999999998331798569990899809999999-99998408999-67999667128-99999999887---9
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGERIS-PHLVVAPLSTL-RNWEREFATWA---P 357 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia-~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~~~~---p 357 (1272)
..+.|.|..++..+ ..|.++++...+|.|||+..+. .+..+.....+ ..||+||+..+ .|-.+++..+. .
T Consensus 24 ~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 99 (206)
T d1veca_ 24 EKPSPIQEESIPIA----LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999999----86998874436740011212464132021025675249984030166899999998751156
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEEEEC
Q ss_conf 99099997572577899985202799902221013675321222223555399901888873110--1378741258705
Q 000810 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~vIiD 435 (1272)
...+....|........... ....+++|+|++.+..... .+....-.++|+|
T Consensus 100 ~~~~~~~~g~~~~~~~~~~l--------------------------~~~~~ivv~TPgrl~~~~~~~~~~~~~l~~lVlD 153 (206)
T d1veca_ 100 GAKVMATTGGTNLRDDIMRL--------------------------DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLD 153 (206)
T ss_dssp SCCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEE
T ss_pred CCCCCCCCCCCCHHHHHHHH--------------------------HHCCCEEEECCCCCCCCCCCHHCCCCCCCEEEEE
T ss_conf 76421236774088899988--------------------------7516708947963311233110001554069984
Q ss_pred CCCCCCCC--CHHHHHHHHHCCC-CCEEEEECCC
Q ss_conf 44335781--1189999982002-5578970568
Q 000810 436 EGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTP 466 (1272)
Q Consensus 436 EaHrlKn~--~s~~~~~l~~l~~-~~rllLTGTP 466 (1272)
|||++-.. ...+...+..+.. ...+++|||-
T Consensus 154 EaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SAT~ 187 (206)
T d1veca_ 154 EADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp THHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 1420011222999999998689988799999449
No 32
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.02 E-value=1.4e-09 Score=82.15 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEE-------ECCCCCHHHHHHHHHHHHHCCC
Q ss_conf 899957789899999999971269994289962453334547567888999-------6699994138899994522099
Q 000810 651 YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSDWNPHADLQAMARAHRLGQ 723 (1272)
Q Consensus 651 ~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi-------~D~dWNP~~d~Qa~gRahRiGQ 723 (1272)
+..++|+++..+|..+...|+++.- .+|++|.+.+.|||+++.++||. ++.+.++..+.|..|||.|.|+
T Consensus 97 Ia~hh~~l~~~~r~~ie~~f~~g~i---~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~~~~~~~~q~~GRAGR~g~ 173 (201)
T d2p6ra4 97 AAFHHAGLLNGQRRVVEDAFRRGNI---KVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGM 173 (201)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSC---CEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC---EEEEECHHHHHHCCCCCCEEEEECCEECCCCCCCCCHHHHHHHHCCCCCCCC
T ss_conf 7888777625668999999867981---4997041887523799746999514204687477999999987544689999
Q ss_pred CCCEEEEEEEECCC
Q ss_conf 99359999950898
Q 000810 724 TNKVMIFRLITRGS 737 (1272)
Q Consensus 724 ~k~V~VyrLit~~T 737 (1272)
...-.++-++....
T Consensus 174 ~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 174 DERGEAIIIVGKRD 187 (201)
T ss_dssp CSCEEEEEECCGGG
T ss_pred CCEEEEEEEECCCC
T ss_conf 97259999968988
No 33
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.02 E-value=3.2e-08 Score=72.38 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=104.6
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHH-HHCCCC-CEEEEECCC-CHHHHHHHHHHHC---C
Q ss_conf 999288999999999833179856999089980999999999998-408999-679996671-2899999999887---9
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGERIS-PHLVVAPLS-TLRNWEREFATWA---P 357 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l-~~~~~~-p~LIVvP~s-ll~qW~~E~~~~~---p 357 (1272)
..+.|.|..++..+ ..|.++++...+|+|||+..+.-+... .....+ ..+|++|+. +..|....+..+. +
T Consensus 22 ~~pt~iQ~~aip~i----l~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~ 97 (207)
T d1t6na_ 22 EHPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 97 (207)
T ss_dssp CCCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999----84998577722333212001344032102467786289985122036789999999984388
Q ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEEEEC
Q ss_conf 99099997572577899985202799902221013675321222223555399901888873110--1378741258705
Q 000810 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVD 435 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~vIiD 435 (1272)
..++.+.+|........... .....+|+|+|++.+..... .+.--.-.++|+|
T Consensus 98 ~~~~~~~~g~~~~~~~~~~l-------------------------~~~~~~ilI~TP~rl~~~~~~~~~~l~~l~~lVlD 152 (207)
T d1t6na_ 98 NVKVAVFFGGLSIKKDEEVL-------------------------KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD 152 (207)
T ss_dssp TCCEEEESCCSCHHHHHHHH-------------------------HHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CCEEEEEECCCCHHHHHHHH-------------------------HHCCCCEEEECCCHHHHHCCCCCEECCCCCEEEHH
T ss_conf 75167884565488999998-------------------------73689989908546432025882554303034023
Q ss_pred CCCCCCCC---CHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHH
Q ss_conf 44335781---11899999820025-578970568999988999
Q 000810 436 EGHRLKNK---DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELF 475 (1272)
Q Consensus 436 EaHrlKn~---~s~~~~~l~~l~~~-~rllLTGTPlqNn~~EL~ 475 (1272)
|||++-.. ...+...+..+... ..+++||| +..++.++.
T Consensus 153 EaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~SAT-~~~~v~~l~ 195 (207)
T d1t6na_ 153 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT-LSKEIRPVC 195 (207)
T ss_dssp SHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESC-CCTTTHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHCCCCCEEEEEEEE-CCHHHHHHH
T ss_conf 4444541378599999999748898879999400-888999999
No 34
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.97 E-value=1.1e-08 Score=75.65 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HHHHHHCCCC-CEEEEECCCC-HHHHHHHHHHHCCC--
Q ss_conf 99928899999999983317985699908998099999999-9998408999-6799966712-89999999988799--
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERIS-PHLVVAPLST-LRNWEREFATWAPQ-- 358 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~~~~-p~LIVvP~sl-l~qW~~E~~~~~p~-- 358 (1272)
..+.|.|..++..+ ..|.+.+++..+|.|||+..+.- +..+.....+ ..||++|+.. ..|-.+++..+...
T Consensus 33 ~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~ 108 (218)
T d2g9na1 33 EKPSAIQQRAILPC----IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 108 (218)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCHHHHHHHHHHHHHEECCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999999----76998899725625445543310222000366675189982451123567777765124432
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHH--HCCCCCCCEEEEECC
Q ss_conf 909999757257789998520279990222101367532122222355539990188887311--013787412587054
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~--~~L~~~~w~~vIiDE 436 (1272)
..+....+........ ........+|+|+|++.+.... ..+......++|+||
T Consensus 109 ~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~~lVlDE 163 (218)
T d2g9na1 109 ASCHACIGGTNVRAEV-------------------------QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDE 163 (218)
T ss_dssp CCEEEECC--CCCSTT-------------------------TSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEES
T ss_pred EEEEEEECCCCHHHHH-------------------------HHHHCCCCEEEEECCHHHHHHHHCCCCCCCCCEEEEEEE
T ss_conf 1687630245306778-------------------------887648877999678157778862883246534898640
Q ss_pred CCCCCCC--CHHHHHHHHHCCCC-CEEEEECCC
Q ss_conf 4335781--11899999820025-578970568
Q 000810 437 GHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTP 466 (1272)
Q Consensus 437 aHrlKn~--~s~~~~~l~~l~~~-~rllLTGTP 466 (1272)
||++-+. ...+...+..+..+ ..+++|||-
T Consensus 164 aD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 164 ADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred CCHHHCCCHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 210212760899999999689998699998059
No 35
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.96 E-value=4e-08 Score=71.71 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=101.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH-HHHHHHHHCCCC-CEEEEECCCCH-HHHHHHHHHHCC--C
Q ss_conf 999288999999999833179856999089980999999-999998408999-67999667128-999999998879--9
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP--Q 358 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqai-a~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~~~~p--~ 358 (1272)
..+.|.|..++.-+ ..|.++++...+|.|||+..+ ..+..+.....+ ..||+||...+ .|-...+..... .
T Consensus 31 ~~pt~iQ~~aip~i----l~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~ 106 (212)
T d1qdea_ 31 EEPSAIQQRAIMPI----IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 106 (212)
T ss_dssp CSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHCCCCCCCC
T ss_conf 99999999999999----86998774456530100466766676650367786148970448886666654001222332
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEEEECC
Q ss_conf 9099997572577899985202799902221013675321222223555399901888873110--13787412587054
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~vIiDE 436 (1272)
..+....+......... .....+|+|+|++.+..... .+.--.-.++|+||
T Consensus 107 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~IvI~TP~~l~~~~~~~~~~l~~l~~lVlDE 159 (212)
T d1qdea_ 107 IKVHACIGGTSFVEDAE---------------------------GLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159 (212)
T ss_dssp CCEEEECC-------------------------------------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEET
T ss_pred CCEEEEEECCCHHHHHH---------------------------HHCCCCEEEECCCCCCCCCCCCCEECCCCEEEEEHH
T ss_conf 11136753266167999---------------------------846991999799755222346735368640775302
Q ss_pred CCCCCC--CCHHHHHHHHHCCCC-CEEEEECCCCCCCHHHHH
Q ss_conf 433578--111899999820025-578970568999988999
Q 000810 437 GHRLKN--KDSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELF 475 (1272)
Q Consensus 437 aHrlKn--~~s~~~~~l~~l~~~-~rllLTGTPlqNn~~EL~ 475 (1272)
||++-. ....+...+..++.. ..+++|||- .+++.++.
T Consensus 160 ad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT~-~~~v~~l~ 200 (212)
T d1qdea_ 160 ADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM-PNDVLEVT 200 (212)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC-CHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHCCCCCEEEEEEEEC-CHHHHHHH
T ss_conf 445314443999999998589888699998618-98999999
No 36
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.95 E-value=1e-09 Score=83.05 Aligned_cols=100 Identities=20% Similarity=0.202 Sum_probs=85.0
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEE
Q ss_conf 70862899821222699999998727980899957789899999999971269994289962453334547567888999
Q 000810 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1272)
Q Consensus 622 ~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi 701 (1272)
..+.++||||.....++.|...|...|++...++|.++..+ |.+ +...+|++|.+++.||| +..+.||+
T Consensus 33 ~~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~~-------~~~---~~~~vlvaTd~~~~GiD-~~v~~Vi~ 101 (138)
T d1jr6a_ 33 IKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSV-------IPT---NGDVVVVATDALMTGFT-GDFDSVID 101 (138)
T ss_dssp HTTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSCC-------CTT---SSCEEEEESSSSCSSSC-CCBSEEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHCCCCCHHHHHCCCHHHH-------HHH---HHCCEEEHHHHHHHCCC-CCCCEEEE
T ss_conf 08998999909589999999998352632033423530544-------323---31121410688870254-33461777
Q ss_pred EC----CCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECC
Q ss_conf 66----999941388999945220999935999995089
Q 000810 702 YD----SDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 702 ~D----~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~ 736 (1272)
+| +|.++..++|++||+.| |+.. +|.|++.+
T Consensus 102 ~~~~~~~P~~~~~y~qr~GR~gR-g~~G---~~~~i~~~ 136 (138)
T d1jr6a_ 102 CNTSDGKPQDAVSRTQRRGRTGR-GKPG---IYRFVAPG 136 (138)
T ss_dssp CSEETTEECCHHHHHHHHTTBCS-SSCE---EEEECCSS
T ss_pred EEECCCCCCCHHHHHHHHCCCCC-CCCC---EEEEECCC
T ss_conf 77647799999999868623048-9982---89997379
No 37
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=98.92 E-value=1.7e-11 Score=95.90 Aligned_cols=102 Identities=14% Similarity=0.140 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEEC---
Q ss_conf 27999999999999708628998212226999999987279808999577898999999999712699942899624---
Q 000810 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST--- 684 (1272)
Q Consensus 608 gKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlST--- 684 (1272)
-|+..|..+|.+ -|.+.|||++...+++.|..+|... ++|+++..+|..+++.|.++... +|++|
T Consensus 12 ~~~~~l~~~l~~---~~~~~iif~~~~~~~~~l~~~l~~~------~hg~~~~~~R~~~~~~f~~g~~~---vLVaT~a~ 79 (248)
T d1gkub2 12 ESISTLSSILEK---LGTGGIIYARTGEEAEEIYESLKNK------FRIGIVTATKKGDYEKFVEGEID---HLIGTAHY 79 (248)
T ss_dssp CCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTTTTS------SCEEECTTSSSHHHHHHHHTSCS---EEEEECC-
T ss_pred HHHHHHHHHHHH---HCCCEEEEECCHHHHHHHHHHHHHH------CCCCCCHHHHHHHHHHHHHCCCE---EEEEECCC
T ss_conf 689999999998---3979899989878999999999873------43789999999999999827985---99996666
Q ss_pred -CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf -53334547567-888999669999413889999452209999
Q 000810 685 -RAGGLGINLAT-ADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 685 -ragg~GINL~~-Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k 725 (1272)
..++.|||++. +++||+||+||++ |++||++|.|+..
T Consensus 80 ~~v~~rGlDip~~v~~VI~~d~P~~~----~r~gR~~R~g~~~ 118 (248)
T d1gkub2 80 YGTLVRGLDLPERIRFAVFVGCPSFR----VTIEDIDSLSPQM 118 (248)
T ss_dssp -----CCSCCTTTCCEEEEESCCEEE----EECSCGGGSCHHH
T ss_pred CCHHHHCCCCCCCCCEEEEECCCCCH----HHHHHHHCCCCCE
T ss_conf 02465136766540189996797400----0054563167451
No 38
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=98.86 E-value=1.7e-09 Score=81.49 Aligned_cols=142 Identities=14% Similarity=0.072 Sum_probs=104.6
Q ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHH----------HHHHHHHHCCCCCCEEEEEECCCCCC---
Q ss_conf 08628998212226999999987279808999577898999----------99999971269994289962453334---
Q 000810 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER----------QIRIDRFNAKNSSRFCFLLSTRAGGL--- 689 (1272)
Q Consensus 623 ~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R----------q~~Id~Fn~~~s~~~vfLlSTragg~--- 689 (1272)
++.|+|||++.....+.|...|...|++...++|+.+...| ..++..|..++ +..|+.|.+..+
T Consensus 35 kggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~---~dvVVaT~~~a~g~~ 111 (299)
T d1a1va2 35 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGD---FDSVIDCNTCVTQTV 111 (299)
T ss_dssp HSSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCC---BSEEEECCEEEEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHCCC---CCEEEEEEEHHCCCC
T ss_conf 69989998796899999999997779878997589407778731205777899999886599---838999862010478
Q ss_pred CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCHHH
Q ss_conf 54756788899966999941388999945220999935999995089899999999999999999985100004899999
Q 000810 690 GINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKAQNINQEE 769 (1272)
Q Consensus 690 GINL~~Ad~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~TvEE~I~~~~~~K~~L~~~v~g~~~~~~~~~~e 769 (1272)
|+|+....+||.+|.+.|+..++|++||+.| |... +|+++.-+|-++.+++.+.-=...+..+ .=-++..++
T Consensus 112 giDid~V~~VI~~d~P~SvesyIQRiGRTGR-Gr~G---~~~~l~~~t~p~~~l~s~al~~~~~ag~----~w~~~~~~~ 183 (299)
T d1a1va2 112 DFSLDPTFTIETTTLPQDAVSRTQRRGRTGR-GKPG---IYRFVAPGERPSGMFDSSVLCECYDAGC----AWYELTPAE 183 (299)
T ss_dssp ECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE---EEEESCSCCBCSCBCCHHHHHHHHHHHH----HTSCCCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHCCCCCC-CCCC---EEEEEECCCCHHHHHHHHHHHHHHHHCC----CHHCCCHHH
T ss_conf 7887851699968999898998762144379-9981---6989714788788999999999997012----450077489
Q ss_pred HHHHHH
Q ss_conf 999998
Q 000810 770 LDDIIR 775 (1272)
Q Consensus 770 l~~ll~ 775 (1272)
..++|+
T Consensus 184 ~~~~~~ 189 (299)
T d1a1va2 184 TTVRLR 189 (299)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 889999
No 39
>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.84 E-value=2e-09 Score=81.08 Aligned_cols=52 Identities=27% Similarity=0.842 Sum_probs=47.2
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6655222223778960414888986665768888899999987677678888
Q 000810 48 DAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 48 ~~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
|....+|.+|+++|+||.||.|.++||+.|+.||+..+|.++|+|+.|....
T Consensus 4 Dd~c~~C~~C~~~~~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 55 (70)
T d1fp0a1 4 DDSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 55 (70)
T ss_dssp SSSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCCCCCCCCCCEEEECCCCCHHHCCCCCCCCCCCCCCCCEECCCCCCCC
T ss_conf 8897998777996978889999915635148998684889898996794837
No 40
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.80 E-value=3.1e-10 Score=86.81 Aligned_cols=57 Identities=30% Similarity=0.595 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHCC---CCCCCEEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHH
Q ss_conf 8997521112422136---8986237864044453544224455534-2258999999774
Q 000810 187 IRPEWTTVDRILACRG---EDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIKIQ 243 (1272)
Q Consensus 187 ~~~~~~~veRIi~~r~---~~~~~eyLVKWk~L~Y~~~tWE~~~~~~-~~~~~i~~f~~~~ 243 (1272)
+.++|..|||||++|. ..+..+|||||+||+|++||||...++. .++..|++|..+.
T Consensus 19 ~~~e~~~VERIi~~r~~~~~~g~~~YLVKWkg~~y~~~TWE~~~~l~~~~~~~I~~f~~R~ 79 (80)
T d2b2ya1 19 LHKQYQIVGRIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALISKKFQACIDEYFSRK 79 (80)
T ss_dssp HHHHTTSEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCCEEEEEEEEEEECCCCCCCEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 5147535579998885236788278998867898141854568887674799999999862
No 41
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.77 E-value=4.3e-09 Score=78.64 Aligned_cols=53 Identities=42% Similarity=1.071 Sum_probs=48.1
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46655222223778960414888986665768888899999987677678888
Q 000810 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 47 ~~~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
.+.+.++|.+|+++++||.||.|+++||..|+.|++..+|.+.|+|+.|....
T Consensus 5 ~d~~~~~C~~C~~~g~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~ 57 (61)
T d1mm2a_ 5 SDHHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCCC
T ss_conf 66886898678997958886999960761145888575899768997883845
No 42
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.77 E-value=5.2e-07 Score=63.78 Aligned_cols=159 Identities=14% Similarity=0.156 Sum_probs=102.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHH-HHHHHHCCC-CCEEEEECCCCH-HHHHHHHHHHC--CC
Q ss_conf 99928899999999983317985699908998099999999-999840899-967999667128-99999999887--99
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERI-SPHLVVAPLSTL-RNWEREFATWA--PQ 358 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~~~-~p~LIVvP~sll-~qW~~E~~~~~--p~ 358 (1272)
.++.|.|..++.-+ ..|.++|+..++|.|||+..+.. +..+..... ...++++|...+ .+-...+.... .+
T Consensus 22 ~~pt~iQ~~aip~i----l~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (206)
T d1s2ma1 22 EKPSPIQEEAIPVA----ITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 97 (206)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCC
T ss_conf 99999999999999----86998898658762144443033110023222344320323511211335443332044467
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEEEECC
Q ss_conf 9099997572577899985202799902221013675321222223555399901888873110--13787412587054
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~vIiDE 436 (1272)
+++...+|........... ....+|+|+|++.+..... .+.-..-.++|+||
T Consensus 98 ~~~~~~~g~~~~~~~~~~l--------------------------~~~~~Ili~TP~~l~~~l~~~~~~l~~l~~lV~DE 151 (206)
T d1s2ma1 98 ISCMVTTGGTNLRDDILRL--------------------------NETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 151 (206)
T ss_dssp CCEEEECSSSCHHHHHHHT--------------------------TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEEECCCCCHHHHHHHH--------------------------CCCCEEEEECCCCCCCCCCCCEEECCCCEEEEEEC
T ss_conf 0688523763014677775--------------------------25654999897533333432101012220777622
Q ss_pred CCCCCCC--CHHHHHHHHHCCC-CCEEEEECCCCCCCHHH
Q ss_conf 4335781--1189999982002-55789705689999889
Q 000810 437 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDE 473 (1272)
Q Consensus 437 aHrlKn~--~s~~~~~l~~l~~-~~rllLTGTPlqNn~~E 473 (1272)
||++-+. ...+...+..++. ...+++||| +..++.+
T Consensus 152 aD~l~~~~f~~~v~~I~~~l~~~~Q~il~SAT-l~~~v~~ 190 (206)
T d1s2ma1 152 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT-FPLTVKE 190 (206)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESC-CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEE-CCHHHHH
T ss_conf 13443002477999999868988889999873-8889999
No 43
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=98.77 E-value=6.7e-08 Score=70.11 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=96.5
Q ss_pred HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHH--CCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC
Q ss_conf 9999999997086289982122269999999872--79808999577898999999999712699942899624533345
Q 000810 613 LDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1272)
Q Consensus 613 L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~G 690 (1272)
+...+.+-...|.+|.+.|..+...+-+...+.. .++++..++|.++..+++.++..|.++..+ +|+||.+...|
T Consensus 20 i~~~I~~El~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g~~~---ILv~TtvIEvG 96 (211)
T d2eyqa5 20 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN---VLVCTTIIETG 96 (211)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCC---EEEESSTTGGG
T ss_pred HHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHCCCCC---EEEEEHHHHHC
T ss_conf 999999999869959999717521266888888747733799997226888899999999829862---68875534404
Q ss_pred CCCCCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCCEEEEEEEE
Q ss_conf 475678889996699-99413889999452209999359999950
Q 000810 691 INLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1272)
Q Consensus 691 INL~~Ad~VIi~D~d-WNP~~d~Qa~gRahRiGQ~k~V~VyrLit 734 (1272)
||++.|+++|+.+++ |-.++.-|-.||+.|-+.. -++|-+..
T Consensus 97 iDvpnA~~iiI~~a~rfGLaQLhQLRGRVGR~~~~--s~c~l~~~ 139 (211)
T d2eyqa5 97 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ--AYAWLLTP 139 (211)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBC--EEEEEEEC
T ss_pred CCCCCCCEEEEECCHHCCCCCCCCCCCEEEECCCC--CEEEEEEC
T ss_conf 68998769987130003311222302335536766--54899856
No 44
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.76 E-value=9.2e-10 Score=83.45 Aligned_cols=57 Identities=28% Similarity=0.563 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHCC-----CCCCCEEEEECCCCCCCCCCCCCCCCCC-CCHHHHHHHHHHHH
Q ss_conf 997521112422136-----8986237864044453544224455534-22589999997741
Q 000810 188 RPEWTTVDRILACRG-----EDDEKEYLVKYKELSYDECYWEYESDIS-AFQPEIERFIKIQS 244 (1272)
Q Consensus 188 ~~~~~~veRIi~~r~-----~~~~~eyLVKWk~L~Y~~~tWE~~~~~~-~~~~~i~~f~~~~~ 244 (1272)
..+|.+|||||++|. ..+..+|||||+||||++||||.+.++. .++..|++|..+.+
T Consensus 3 ~ee~~~VErIld~r~~~~~~~~~~~eYlVKWkg~~y~~~TWE~~~~l~~~~~~~i~~f~~r~~ 65 (69)
T d2dy8a1 3 FEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKLAPEQVKHFQNREN 65 (69)
T ss_dssp CCSSSCEEEEEEEEEEECSSSCEEEEEEEEESCCSSCCCEEEEHHHHHHHSHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEEEEEECCCCCCEEEEEEEECCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 545425268866875203689971899999389973518343578844632999999998711
No 45
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=98.76 E-value=1.4e-09 Score=82.04 Aligned_cols=118 Identities=17% Similarity=0.250 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH--------HHHHH-HH--CCCCEEEEECCCCHHHHHHHHHHHHCCCCC
Q ss_conf 27999999999999708628998212226999--------99998-72--798089995778989999999997126999
Q 000810 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL--------LEDYL-TF--KKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1272)
Q Consensus 608 gKl~~L~klL~~l~~~g~kVLIFsq~~~~ldi--------L~~~L-~~--~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~ 676 (1272)
.|...+...+.+-..+|.+|.+.|..+...+. ....| .. .++++..++|.++..+|+.++..|.++...
T Consensus 13 ~~~~~v~~~I~~el~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 13 DRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp STHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEE
T ss_conf 42999999999999749988999751445532110136789999998508997288986036599999999999779878
Q ss_pred CEEEEEECCCCCCCCCCCCCCEEEEECCC-CCHHHHHHHHHHHHHCCCCCCEE
Q ss_conf 42899624533345475678889996699-99413889999452209999359
Q 000810 677 RFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 677 ~~vfLlSTragg~GINL~~Ad~VIi~D~d-WNP~~d~Qa~gRahRiGQ~k~V~ 728 (1272)
+|+||.+.+.|||++.|+++|+++++ +..+..-|..||+.|-|++..+.
T Consensus 93 ---iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~~~~~~ 142 (206)
T d1gm5a4 93 ---ILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCF 142 (206)
T ss_dssp ---BCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEE
T ss_pred ---EEEEEHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHEEECCCCCEEE
T ss_conf ---99970243104552678489998048863778876520212121254057
No 46
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=98.71 E-value=4.1e-07 Score=64.54 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=96.4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHH-CCC-CCEEEEECCCCH----HHHHHHHHHHCC
Q ss_conf 99928899999999983317985699908998099999999999840-899-967999667128----999999998879
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERI-SPHLVVAPLSTL----RNWEREFATWAP 357 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~-~~~-~p~LIVvP~sll----~qW~~E~~~~~p 357 (1272)
..+.|.|..++..+ ..|.++|+..++|+|||+..+..+..... ... ...++++|...+ .++......+..
T Consensus 22 ~~pt~iQ~~aip~~----l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (209)
T d1q0ua_ 22 YKPTEIQERIIPGA----LRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97 (209)
T ss_dssp CSCCHHHHHHHHHH----HHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCHHHHHHHHHH----HCCCCEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999----87997686624442133144431001245444444422223333214778888876412233
Q ss_pred ---CCEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHH--CCCCCCCEEE
Q ss_conf ---99099997572577899985202799902221013675321222223555399901888873110--1378741258
Q 000810 358 ---QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1272)
Q Consensus 358 ---~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~--~L~~~~w~~v 432 (1272)
...+....+........ .......+|+|+|++.+..-.. ......-.++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~Ilv~TP~~l~~~~~~~~~~~~~l~~l 151 (209)
T d1q0ua_ 98 KDRMIVARCLIGGTDKQKAL--------------------------EKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 151 (209)
T ss_dssp GGGCCCEEEECCCSHHHHTT--------------------------CCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred CCCCCCCCCCCCCHHHHHHH--------------------------HHHCCCCEEEEECCCHHHHHHHHHCCCCCCCEEE
T ss_conf 34321100025620367788--------------------------8746675499834710122332101344553389
Q ss_pred EECCCCCCCCC--CHHHHHHHHHCCCC-CEEEEECCCCCCCHHHH
Q ss_conf 70544335781--11899999820025-57897056899998899
Q 000810 433 IVDEGHRLKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDEL 474 (1272)
Q Consensus 433 IiDEaHrlKn~--~s~~~~~l~~l~~~-~rllLTGTPlqNn~~EL 474 (1272)
|+||||++-+. ...+...+..++.. ..+++|||- .+.+.++
T Consensus 152 ViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SATl-~~~v~~l 195 (209)
T d1q0ua_ 152 VVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 195 (209)
T ss_dssp EECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred EEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHH
T ss_conf 9960230113140999999999789988799997219-9899999
No 47
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.65 E-value=2.3e-08 Score=73.47 Aligned_cols=48 Identities=23% Similarity=0.441 Sum_probs=42.2
Q ss_pred HHHH---HHHHHHHHCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 7899---99999985189964342231230289999999999999985411067
Q 000810 972 NQRA---AFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDIT 1022 (1272)
Q Consensus 972 ~~rr---~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~~~~e~~~ 1022 (1272)
|+|| .|++++.||||.++ +.|+.++.+||++||++|+++||+||.| +.
T Consensus 2 WnrrdF~~Fi~a~ekyGR~d~--~~Ia~e~~~Kt~eEV~~Y~~vFw~ry~e-iq 52 (52)
T d1ofcx1 2 WTKRDFNQFIKANEKYGRDDI--DNIAKDVEGKTPEEVIEYNAVFWERCTE-LQ 52 (52)
T ss_dssp CCHHHHHHHHHHHHHHCTTCH--HHHTTSSTTCCHHHHHHHHHHHHHHGGG-CT
T ss_pred CCHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCHHHHHHHHHHHHHHHHH-HC
T ss_conf 879999999999999887559--9999986699999999999999998775-09
No 48
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.61 E-value=1.8e-09 Score=81.29 Aligned_cols=74 Identities=27% Similarity=0.537 Sum_probs=48.6
Q ss_pred CCCCCCCCCCC-CCCCCCC------------CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHH
Q ss_conf 65433333444-6676699------------9843356212446777743258876665546757698873129158988
Q 000810 100 NDIDKILDCEM-RPTVAGD------------SDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTK 166 (1272)
Q Consensus 100 ~~iekIL~~R~-rP~~~~~------------~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~k 166 (1272)
..|++||++|+ ++.+.+. +.............||||||+|+||+||+|+|++.|.+.. ..++ .+
T Consensus 2 e~IEkil~~R~g~~g~tg~~tt~~ave~d~~p~~~~d~~~~~~~~eylIKWkg~s~~hntWe~~e~L~~~~--~~g~-kk 78 (95)
T d2b2ya2 2 ETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQQN--VRGM-KK 78 (95)
T ss_dssp CBEEEEEEEEEECTTCCSSSSSHHHHHHHCCTTTTCC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTT--CBCH-HH
T ss_pred CHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHH--HHHH-HH
T ss_conf 07999998752688888875503310024786433587778886779988689876437664999985420--7899-99
Q ss_pred HHHHHHHCCC
Q ss_conf 9866541025
Q 000810 167 VNNFHRQMSS 176 (1272)
Q Consensus 167 l~~f~k~~~~ 176 (1272)
+.||+++...
T Consensus 79 l~ny~kk~~~ 88 (95)
T d2b2ya2 79 LDNYKKKDQE 88 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999997988
No 49
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.48 E-value=3.5e-08 Score=72.10 Aligned_cols=72 Identities=19% Similarity=0.369 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 8654333334446676699984335621---2446777743258876665546757698873129158988986654102
Q 000810 99 LNDIDKILDCEMRPTVAGDSDVSKLGSK---QIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1272)
Q Consensus 99 ~~~iekIL~~R~rP~~~~~~~~~~~~~k---~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~ 175 (1272)
...|++|++.|.++...........-.. .....+|||||+|+||.||||+|++.|.. +.++ +++.||+++.-
T Consensus 5 ~~~IdkVldhR~k~~~e~~~~~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~----~~~~-~k~~ny~k~~~ 79 (81)
T d2dy7a1 5 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQ----VRGL-KRLDNYCKQFI 79 (81)
T ss_dssp CCCCCEEEEEECCCTTTCCCCCCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTT----SSHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHH----CCHH-HHHHHHHHHHH
T ss_conf 778999980364677788752246420135778847999998998865471358999855----4017-89999999882
No 50
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=98.36 E-value=2e-07 Score=66.69 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=46.3
Q ss_pred CCCCCHHHHHHHCCC--CCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 975211124221368--986237864044453544224455534225899999977411
Q 000810 189 PEWTTVDRILACRGE--DDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSR 245 (1272)
Q Consensus 189 ~~~~~veRIi~~r~~--~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~~~~~ 245 (1272)
++| .||+||++|.. ++..+|||||+|+++++||||....+..++..|++|......
T Consensus 7 ~ey-eVE~Il~~R~~~~~~~~~YlVkW~Gy~~~~~TWEp~~~L~~~~~~i~~f~~~~~~ 64 (70)
T d1g6za_ 7 EEY-EVERIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLSGCSAVLAEWKRRKRR 64 (70)
T ss_dssp CSS-CCCSCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGSSCHHHHHHHHHHHTT
T ss_pred CEE-EEEEEEEEEECCCCCEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 488-9878999998369995999999689994268664488976259999999997465
No 51
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.31 E-value=1.3e-07 Score=68.11 Aligned_cols=45 Identities=42% Similarity=1.125 Sum_probs=39.0
Q ss_pred CCCCCC---CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222237---789604148889866657688888999999876776788
Q 000810 53 SCQACG---ESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 53 ~C~~C~---~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1272)
.|.+|+ .++.||.||.|+..||+.|+.||+..+|.++|+|+.|..
T Consensus 2 ~C~vC~~~~~~~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~ 49 (51)
T d1f62a_ 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 995768979998878858999789799889987858997989928909
No 52
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.30 E-value=2.7e-07 Score=65.80 Aligned_cols=56 Identities=25% Similarity=0.443 Sum_probs=47.4
Q ss_pred CCCHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 521112422136-89862378640444535442244555342258999999774113
Q 000810 191 WTTVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1272)
Q Consensus 191 ~~~veRIi~~r~-~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~~~~~~ 246 (1272)
.-.||+||++|. .+|..+|||||+|.|++++|||..+.+..++..|+.|.......
T Consensus 6 ~y~VE~Ild~R~~~~g~~~YlVkW~Gy~~~~~TWEp~~~l~~~~~~i~~f~~~~~~k 62 (66)
T d2dnta1 6 LYEVERIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLVNCEEYIHDFNRRHTEK 62 (66)
T ss_dssp SCCCCCEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCTTCHHHHHHHHHHHSCS
T ss_pred EEEEEEEEEEEECCCCCEEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHCCCC
T ss_conf 599999999998599959999998889974680732889761599999999876267
No 53
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.30 E-value=1.4e-05 Score=53.57 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+.+.|..|||++..+...+.|..+|...++++..+..... ++++.|-.. ++..+ .+.++|.
T Consensus 16 ~~eK~~AIi~eV~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~--~~Ea~II~~-Ag~~g--~VtIATN 90 (175)
T d1tf5a4 16 MEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNH--EREAQIIEE-AGQKG--AVTIATN 90 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCH--HHHHHHHTT-TTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEHHHHH--HHHHHHHHH-CCCCC--CEEEHHH
T ss_conf 999999999999999965998899968199999999999975997122102268--998888875-13798--1664455
Q ss_pred CCCCCCCCCCC--------CEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 33345475678--------88999669999413889999452209999359999
Q 000810 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1272)
Q Consensus 686 agg~GINL~~A--------d~VIi~D~dWNP~~d~Qa~gRahRiGQ~k~V~Vyr 731 (1272)
.+|.|.++.-. =+||.-..+-|...+.|..||+.|.|+......|.
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~~~~s~Rid~Ql~GR~gRQGdpGs~~~~~ 144 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGITQFYL 144 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred HHHCCCCCCCHHHHHHCCCCEEEEECCCCCHHHHHHHHCCHHHHCCCCCCEEEE
T ss_conf 887088756638898579858998404852667888842344207874518999
No 54
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=98.27 E-value=3.2e-07 Score=65.24 Aligned_cols=53 Identities=30% Similarity=0.547 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 7521112422136898623786404445354422445553422589999997741
Q 000810 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQS 244 (1272)
Q Consensus 190 ~~~~veRIi~~r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~~~~ 244 (1272)
+| .|++||++|...+..+|||||+|.|++++|||....+. ....|+.|.....
T Consensus 13 ey-eVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~-~~~~i~~f~~~~~ 65 (73)
T d1guwa_ 13 EY-VVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLD-CPDLIAEFLQSQK 65 (73)
T ss_dssp CC-BEEEECCCBCCTTCCEECEEESSSCTTSCCCEETTTEE-CHHHHHHHHHHHC
T ss_pred EE-EEEEEEEEEECCCCEEEEEEECCCCCCCCCCCCHHHCC-CHHHHHHHHHHHH
T ss_conf 38-99999999982994899999799997577583767899-9899999999856
No 55
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=98.25 E-value=1.4e-07 Score=67.75 Aligned_cols=49 Identities=27% Similarity=0.427 Sum_probs=44.4
Q ss_pred CHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 11124221368986237864044453544224455534225899999977
Q 000810 193 TVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1272)
Q Consensus 193 ~veRIi~~r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~~ 242 (1272)
.||+||++|...+..+|||||+|+|++++|||..+.+ .++..|+.|...
T Consensus 3 eVE~Il~~r~~~~~~~YlVkW~Gy~~~~~tWEp~~~l-~~~~~i~~f~~~ 51 (52)
T d1q3la_ 3 AVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL-DCQDLIQQYEAS 51 (52)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE-ECHHHHHHHHHH
T ss_pred EEEEEEEEEEECCEEEEEEEECCCCCCCCCEECHHHC-CCHHHHHHHHHC
T ss_conf 6999999998299189999989999726717017789-987999999865
No 56
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.19 E-value=1.5e-05 Score=53.38 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=79.5
Q ss_pred HCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEE-
Q ss_conf 7086289982122269999999872798089995778989999999997126999428996245333454756788899-
Q 000810 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI- 700 (1272)
Q Consensus 622 ~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI- 700 (1272)
+.+.+++||+......+.+...|...|..+..++|.+...+++. |.++. ..+|++|.+.+.|||+ .+++||
T Consensus 34 ~~~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~~----~~~~~---~~~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 34 ADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPT----IKQKK---PDFILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------CC---CSEEEESSSTTCCTTC-CCSEEEE
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH----HHCCC---CCEEEEECHHHHCEEC-CCEEEEE
T ss_conf 55998999949999999999999866980999768675767766----51577---6789970036536412-7338986
Q ss_pred --------EECC----------CCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCC
Q ss_conf --------9669----------999413889999452209999359999950898
Q 000810 701 --------IYDS----------DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 701 --------i~D~----------dWNP~~d~Qa~gRahRiGQ~k~V~VyrLit~~T 737 (1272)
.||+ +.+.+...|+.||+.|.+.. ...|+++...+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~--~~~~~~y~~~~ 158 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNR--DGDSYYYSEPT 158 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCEEEEECSCC
T ss_pred CCCEECEEEECCCCCEEEEEEEECCHHHHHHHCCCCCCCCCC--CEEEEEECCCC
T ss_conf 685000035658788268732426899999864666666788--60899938988
No 57
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.01 E-value=6e-07 Score=63.31 Aligned_cols=47 Identities=28% Similarity=0.813 Sum_probs=39.5
Q ss_pred CCCCCCCCCC-----CCEEECCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCC
Q ss_conf 5222223778-----96041488898666576888889----99999876776788
Q 000810 51 DDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLK----APPSGSWRCPECVS 97 (1272)
Q Consensus 51 ~~~C~~C~~~-----~~ll~Cd~C~~~~H~~Cl~p~l~----~~p~~~W~C~~C~~ 97 (1272)
...|.+|+.. +.||.|+.|..+||+.|+.|++. ..|.+.|+|+.|..
T Consensus 16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~ 71 (88)
T d1weva_ 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 59925789906789996888489997456112798555433455898389944573
No 58
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=97.95 E-value=9.4e-07 Score=61.92 Aligned_cols=49 Identities=24% Similarity=0.305 Sum_probs=43.7
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 21112422136898623786404445354422445553422589999997
Q 000810 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1272)
Q Consensus 192 ~~veRIi~~r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~ 241 (1272)
-.||+||++|...+..+|||||+|.|++++|||....+. ....|+.|..
T Consensus 4 yeVE~Il~~r~~~~~~~YlVkW~Gy~~~~~TWEp~~nl~-~~~li~~f~~ 52 (55)
T d1pfba_ 4 YAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL-DRRLIDIYEQ 52 (55)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC-STHHHHHHHT
T ss_pred EEEEEEEEEEEECCEEEEEEEECCCCCCCCCCCCHHHCC-CHHHHHHHHH
T ss_conf 999999958996990899999899999898392276799-9799999998
No 59
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.94 E-value=2.4e-06 Score=59.07 Aligned_cols=49 Identities=29% Similarity=0.324 Sum_probs=42.8
Q ss_pred CCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 52111242213689862378640444535442244555342258999999
Q 000810 191 WTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (1272)
Q Consensus 191 ~~~veRIi~~r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~ 240 (1272)
.-.||+||++|...+..+|||||+|.|++++|||....+. ....|+.|.
T Consensus 4 ~yeVE~Il~~r~~~~~~~YlVkW~gy~~~~~TWEp~~nl~-~~~li~~fe 52 (52)
T d2dnva1 4 VFAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL-DARLLAAFE 52 (52)
T ss_dssp CCCCCCEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCC-CHHHHHHHH
T ss_pred EEEEEEEEEEEEECCEEEEEEEECCCCCCCCEECCHHHCC-CHHHHHHCC
T ss_conf 4999999999996994999999887997478072378999-969998429
No 60
>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.69 E-value=3.2e-06 Score=58.11 Aligned_cols=61 Identities=28% Similarity=0.525 Sum_probs=43.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 865433333444667669998433562124467777432588766655467576988731291589889866541025
Q 000810 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSS 176 (1272)
Q Consensus 99 ~~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~~ 176 (1272)
...+++|++.|..+...+. ...+|||||+|++|.||||+|+..|... . ...+..|+++...
T Consensus 6 ~~~VErIld~r~~~~~~~~-----------~~~eYlVKWkg~~y~~~TWE~~~~l~~~---~---~~~i~~f~~r~~~ 66 (69)
T d2dy8a1 6 FHVPERIIDSQRASLEDGT-----------SQLQYLVKWRRLNYDEATWENATDIVKL---A---PEQVKHFQNRENS 66 (69)
T ss_dssp SSCEEEEEEEEEEECSSSC-----------EEEEEEEEESCCSSCCCEEEEHHHHHHH---S---HHHHHHHHHHTTC
T ss_pred CCCCEEEEEEEEEECCCCC-----------CEEEEEEEECCCCHHHCCCCCHHHHHHH---H---HHHHHHHHHHHHC
T ss_conf 4252688668752036899-----------7189999938997351834357884463---2---9999999987115
No 61
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=97.65 E-value=0.001 Score=40.22 Aligned_cols=159 Identities=15% Similarity=0.088 Sum_probs=94.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCH----HHHHHHHHHHCCC
Q ss_conf 999928899999999983317985699908998099999999999840899967999667128----9999999988799
Q 000810 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1272)
Q Consensus 283 ~~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll----~qW~~E~~~~~p~ 358 (1272)
|...+|-|+-|.--| + .|-|.-+.+|=|||+++...+....-.+ +++-||+.+.-| ..|...+-+|+ +
T Consensus 78 G~RhyDVQLiGgi~L----~--~G~iaem~TGEGKTL~a~l~a~l~al~g-~~vhvvTvNdyLA~RDae~m~~iy~~l-G 149 (273)
T d1tf5a3 78 GMFPFKVQLMGGVAL----H--DGNIAEMKTGEGKTLTSTLPVYLNALTG-KGVHVVTVNEYLASRDAEQMGKIFEFL-G 149 (273)
T ss_dssp SCCCCHHHHHHHHHH----H--TTSEEECCTTSCHHHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CEEEEHHHHHHHHHH----H--HHHHEEECCCCCCHHHHHHHHHHHHHCC-CCCEEEECCCCCCCHHHHHHHHHHHHC-C
T ss_conf 647730478999998----7--6553020688751039999999999669-985697157300331245776799982-9
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH---------HHCCCCCCC
Q ss_conf 90999975725778999852027999022210136753212222235553999018888731---------101378741
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d---------~~~L~~~~w 429 (1272)
+.|-+........... ..+..||+-.|-..+.-| ........+
T Consensus 150 lsvg~~~~~~~~~~r~----------------------------~~Y~~di~Ygt~~e~~fDyLrd~~~~~~~~~~~r~~ 201 (273)
T d1tf5a3 150 LTVGLNLNSMSKDEKR----------------------------EAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 201 (273)
T ss_dssp CCEEECCTTSCHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred CCCCCCCCCCCHHHHH----------------------------HHHHCCCEECCHHHHHHHHCCHHHHCCHHHHCCCCC
T ss_conf 8734565545777777----------------------------776078355025555444411433258666456888
Q ss_pred EEEEECCCCCCC-----C----------CCHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf 258705443357-----8----------1118999998200255789705689999889999998
Q 000810 430 QCMIVDEGHRLK-----N----------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1272)
Q Consensus 430 ~~vIiDEaHrlK-----n----------~~s~~~~~l~~l~~~~rllLTGTPlqNn~~EL~~ll~ 479 (1272)
.+.||||+..+- . ..+..++.+..+ ....-+||||- .....|+|.+.+
T Consensus 202 ~~aIvDEvDsiliDeartpliisg~~~~~a~it~q~~f~~-y~~l~gmtgta-~~~~~e~~~iy~ 264 (273)
T d1tf5a3 202 HFAVIDEVDSILIDEARTPLIISGQSMTLATITFQNYFRM-YEKLAGMTGTA-KTEEEEFRNIYN 264 (273)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEEEEEEEEHHHHHTT-SSEEEEEESCC-GGGHHHHHHHHC
T ss_pred CEEEEECCHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHH-HHHHHCCCCCC-HHHHHHHHHCCC
T ss_conf 7899975346625346885585368641546449999999-99985774630-778999884039
No 62
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.65 E-value=2.9e-05 Score=51.23 Aligned_cols=46 Identities=28% Similarity=0.896 Sum_probs=35.2
Q ss_pred CCCCCCCCCC--CCEEEC--CCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5222223778--960414--8889-86665768888899999987677678888
Q 000810 51 DDSCQACGES--ENLMSC--DTCT-YAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 51 ~~~C~~C~~~--~~ll~C--d~C~-~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
..+| +|++. +++|.| +.|. ..||+.|+ +|...|.++|+||.|....
T Consensus 16 ~~~C-iC~~~~~~~~i~c~~~~C~~~wfH~~Cv--gl~~~p~~~w~C~~C~~~~ 66 (71)
T d1wesa_ 16 PTYC-LCNQVSYGEMIGCDNEQCPIEWFHFSCV--SLTYKPKGKWYCPKCRGDS 66 (71)
T ss_dssp CCCS-TTCCCCCSSEECCSCTTCSCCCEETTTT--TCSSCCSSCCCCTTTSSCC
T ss_pred CCEE-EECCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCEECCCCCCCC
T ss_conf 8877-8289778987788788999968548547--8984799858996886634
No 63
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.55 E-value=0.0019 Score=38.31 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=80.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCH----HHHHHHHHHHCCC
Q ss_conf 999928899999999983317985699908998099999999999840899967999667128----9999999988799
Q 000810 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1272)
Q Consensus 283 ~~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll----~qW~~E~~~~~p~ 358 (1272)
|...++-|+-|.--| ..|-|.-+.+|=|||+++...+....-.+ +++-||+.+.-| ..|...+-+|. .
T Consensus 95 GmRhyDVQLiGgi~l------~~g~iaem~TGEGKTL~a~l~a~l~al~g-~~vhvvTvNdyLA~RDa~~m~~~y~~l-G 166 (288)
T d1nkta3 95 DQRPFDVQVMGAAAL------HLGNVAEMKTGEGKTLTCVLPAYLNALAG-NGVHIVTVNDYLAKRDSEWMGRVHRFL-G 166 (288)
T ss_dssp SCCCCHHHHHHHHHH------HTTEEEECCTTSCHHHHTHHHHHHHHTTT-SCEEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCEEEEEHHHHHHHH------HHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEECCCHHHHHHHHHHHHHHHHH-C
T ss_conf 532554005777888------63111003678740099999999999659-973897257233015488888999993-8
Q ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH---------HHCCCCCCC
Q ss_conf 90999975725778999852027999022210136753212222235553999018888731---------101378741
Q 000810 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d---------~~~L~~~~w 429 (1272)
+.|-+............ .+..||+-.|-..+.-| ...+-...+
T Consensus 167 lsvg~~~~~~~~~~~~~----------------------------~Y~~di~Y~t~~e~gfDyLrd~~~~~~~~~~~r~~ 218 (288)
T d1nkta3 167 LQVGVILATMTPDERRV----------------------------AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGH 218 (288)
T ss_dssp CCEEECCTTCCHHHHHH----------------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred CCCCCCCCCCCHHHHHH----------------------------HHHCCCCCCCHHHHHHHHHHHHHCCCHHHHCCCCC
T ss_conf 88676655577687888----------------------------86365411347777566401132168666265578
Q ss_pred EEEEECCCCCC
Q ss_conf 25870544335
Q 000810 430 QCMIVDEGHRL 440 (1272)
Q Consensus 430 ~~vIiDEaHrl 440 (1272)
.++||||+..+
T Consensus 219 ~~aIvDEvDsi 229 (288)
T d1nkta3 219 HYAIVDEVDSI 229 (288)
T ss_dssp CEEEETTHHHH
T ss_pred CEEEEECCCCC
T ss_conf 67999735202
No 64
>d2b2ya1 b.34.13.2 (A:108-187) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.50 E-value=1.1e-05 Score=54.28 Aligned_cols=56 Identities=21% Similarity=0.567 Sum_probs=39.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 654333334446676699984335621244677774325887666554675769887312915898898665410
Q 000810 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1272)
Q Consensus 100 ~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~ 174 (1272)
..|++|+++|......+ ..+|||||+|++|-+|||+|+..|... ....+..|.++.
T Consensus 24 ~~VERIi~~r~~~~~~g-------------~~~YLVKWkg~~y~~~TWE~~~~l~~~------~~~~I~~f~~R~ 79 (80)
T d2b2ya1 24 QIVGRIIAHSNQKSAAG-------------YPDYYCKWQGLPYSECSWEDGALISKK------FQACIDEYFSRK 79 (80)
T ss_dssp TSEEEEEEEEEEECTTS-------------CEEEEEEETTSCGGGCEEECHHHHHHH------HHHHHHHHHHTT
T ss_pred EEEEEEEEEEECCCCCC-------------CEEEEEEECCCCHHHCCCCCHHHHHHH------HHHHHHHHHHHC
T ss_conf 35579998885236788-------------278998867898141854568887674------799999999862
No 65
>d2dy7a1 b.34.13.2 (A:172-252) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=97.48 E-value=2.5e-05 Score=51.68 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=34.9
Q ss_pred CCCHHHHHHHCCCC-------------------CCCEEEEECCCCCCCCCCCCCCCCCCCCH--HHHHHHHH
Q ss_conf 52111242213689-------------------86237864044453544224455534225--89999997
Q 000810 191 WTTVDRILACRGED-------------------DEKEYLVKYKELSYDECYWEYESDISAFQ--PEIERFIK 241 (1272)
Q Consensus 191 ~~~veRIi~~r~~~-------------------~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~--~~i~~f~~ 241 (1272)
...||+|+++|... +..+|||||+|++|.+||||..+.+..+. ..++.|..
T Consensus 5 ~~~IdkVldhR~k~~~e~~~~~~e~i~d~~~~~~~~eylVKW~g~~~~~~tWe~~~~L~~~~~~~k~~ny~k 76 (81)
T d2dy7a1 5 FHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCK 76 (81)
T ss_dssp CCCCCEEEEEECCCTTTCCCCCCCCCSSHHHHHHHCEEEEECCCCSSCCCEEECHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHH
T ss_conf 778999980364677788752246420135778847999998998865471358999855401789999999
No 66
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.35 E-value=0.0043 Score=35.71 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECC
Q ss_conf 21279999999999997086289982122269999999872798089995778989999999997126999428996245
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+...|..|||.+..+..-+.|...|...|+++..+.... .+|++.|-. +++..+ .+-++|.
T Consensus 16 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~--herEAeIIA-qAG~~G--aVTIATN 90 (219)
T d1nkta4 16 EEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKY--HEQEATIIA-VAGRRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSC--HHHHHHHHH-TTTSTT--CEEEEET
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCHHCCCHHH--HHHHHHHHH-HCCCCC--CEEEECC
T ss_conf 89999999999999996699889961759999999999987253432241046--888889999-646688--3796200
Q ss_pred CCCCCCCCC
Q ss_conf 333454756
Q 000810 686 AGGLGINLA 694 (1272)
Q Consensus 686 agg~GINL~ 694 (1272)
-+|.|.++.
T Consensus 91 MAGRGTDI~ 99 (219)
T d1nkta4 91 MAGRGTDIV 99 (219)
T ss_dssp TCSTTCCCC
T ss_pred CCCCCCCEE
T ss_conf 047877646
No 67
>d2b2ya2 b.34.13.2 (A:13-107) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=97.34 E-value=3.6e-05 Score=50.57 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=30.2
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCC----CHHHHHHHHHH
Q ss_conf 3689862378640444535442244555342----25899999977
Q 000810 201 RGEDDEKEYLVKYKELSYDECYWEYESDISA----FQPEIERFIKI 242 (1272)
Q Consensus 201 r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~----~~~~i~~f~~~ 242 (1272)
+...+..+|||||+|.+|.+||||.++.+.. -...++.|...
T Consensus 40 ~~~~~~~eylIKWkg~s~~hntWe~~e~L~~~~~~g~kkl~ny~kk 85 (95)
T d2b2ya2 40 NKEPGEIQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNYKKK 85 (95)
T ss_dssp CCSCCEEEEEEEETTSCGGGCEEECHHHHHHTTCBCHHHHHHHHHH
T ss_pred CCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7788867799886898764376649999854207899999999997
No 68
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.33 E-value=4.7e-05 Score=49.77 Aligned_cols=46 Identities=22% Similarity=0.621 Sum_probs=37.4
Q ss_pred CCCCCCCCC---C-CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222223778---9-6041488898666576888889999998767767888
Q 000810 52 DSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 52 ~~C~~C~~~---~-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1272)
..| +|+.. + .||.|+.|.+.||+.|+.++....|.++|+|+.|...
T Consensus 17 ~~C-~C~~~~~~~~~mv~Cd~C~~w~H~~C~g~~~~~~~~~~~~C~~C~~~ 66 (72)
T d1weea_ 17 VDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred EEE-ECCCCCCCCCEEEEECCCCCCCCHHHCCCCCCCCCCCCEECCCCCCC
T ss_conf 770-68998489986989599998395512697624589976999288581
No 69
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=97.19 E-value=0.0063 Score=34.56 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC--CC-CCEEEEECCCCHHHHHH-HHHHHCCCC
Q ss_conf 999288999999999833179856999089980999999999998408--99-96799966712899999-999887999
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RI-SPHLVVAPLSTLRNWER-EFATWAPQM 359 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--~~-~p~LIVvP~sll~qW~~-E~~~~~p~~ 359 (1272)
..+-+.|..++.-. ..+.-++|.-..|+|||.++..++..+... .. .++++++|+..-..=.. .+....
T Consensus 147 ~~~~~~Q~~A~~~a----l~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~--- 219 (359)
T d1w36d1 147 SDEINWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKAL--- 219 (359)
T ss_dssp TTSCCHHHHHHHHH----HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHH---
T ss_pred CCCCCHHHHHHHHH----HCCCEEEEECCCCCCCEEHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHH---
T ss_conf 65663899999999----70885999768988752169999999999875269828984375999999998887777---
Q ss_pred EEEEEECCHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCC
Q ss_conf 09999757257789998520279990222101367532122222355539990188887311013787412587054433
Q 000810 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaHr 439 (1272)
...... ......... ........--.......+. ........++++|||||-.
T Consensus 220 ---------------~~~~~~--~~~~~~~~~--------~~~t~~~ll~~~~~~~~~~--~~~~~~l~~d~lIIDEaSm 272 (359)
T d1w36d1 220 ---------------RQLPLT--DEQKKRIPE--------DASTLHRLLGAQPGSQRLR--HHAGNPLHLDVLVVDEASM 272 (359)
T ss_dssp ---------------HHSSCC--SCCCCSCSC--------CCBTTTSCC-------------CTTSCCSCSEEEECSGGG
T ss_pred ---------------HHCCCH--HHHHHHHHH--------HHHHHHHHHHHHHCCHHHH--HHHHCCCCCCEEEEHHHHC
T ss_conf ---------------645810--445542013--------4557899876310006777--7543666541346533214
Q ss_pred CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCHH
Q ss_conf 578111899999820025578970568999988
Q 000810 440 LKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLD 472 (1272)
Q Consensus 440 lKn~~s~~~~~l~~l~~~~rllLTGTPlqNn~~ 472 (1272)
+- ...+...+..+....+++|.|=|-|-.+.
T Consensus 273 v~--~~l~~~ll~~~~~~~~lILvGD~~QLppV 303 (359)
T d1w36d1 273 ID--LPMMSRLIDALPDHARVIFLGDRDQLASV 303 (359)
T ss_dssp CB--HHHHHHHHHTCCTTCEEEEEECTTSGGGT
T ss_pred CC--HHHHHHHHHHHCCCCEEEEECCHHHCCCC
T ss_conf 48--99999999872599989997772216687
No 70
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.15 E-value=7.9e-05 Score=48.17 Aligned_cols=49 Identities=33% Similarity=0.797 Sum_probs=38.6
Q ss_pred CCCCCCCCCCC----CCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
Q ss_conf 55222223778----96041488898666576888889999-998767767888
Q 000810 50 KDDSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (1272)
Q Consensus 50 ~~~~C~~C~~~----~~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~ 98 (1272)
....|.+|++. ..+|.|+.|...||..|+.++....+ ...|+|+.|...
T Consensus 5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~ 58 (64)
T d1we9a_ 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHCCCCCEEECCCCCCC
T ss_conf 978184869977999878774899956980457858678888980899689380
No 71
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=97.13 E-value=3.7e-05 Score=50.53 Aligned_cols=45 Identities=18% Similarity=0.462 Sum_probs=34.0
Q ss_pred CHHHHHHHCC--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 1112422136--898623786404445354422445553422589999997
Q 000810 193 TVDRILACRG--EDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1272)
Q Consensus 193 ~veRIi~~r~--~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~~ 241 (1272)
.||+||+.|. .++..+|||||+| |++.|||..+.+. ...+..|..
T Consensus 2 vvE~Il~~R~~~~~~~~eYlVkW~g--y~~~TWEP~~nl~--~~li~~f~~ 48 (54)
T d1x3pa1 2 VAESVIGKRVGDDGKTIEYLVKWTD--MSDATWEPQDNVD--STLVLLYQQ 48 (54)
T ss_dssp CSSCCCCBSSCSSSCCCCBCCCCSS--SSSCSCSTTCCSS--SSSHHHHTS
T ss_pred HHHHHHHHHCCCCCCEEEEEEEECC--CCCCCCCCHHHCC--HHHHHHHHH
T ss_conf 7789988770378980899988899--9878720058777--999999998
No 72
>d1guwa_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=96.88 E-value=9e-05 Score=47.76 Aligned_cols=53 Identities=28% Similarity=0.513 Sum_probs=40.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 65433333444667669998433562124467777432588766655467576988731291589889866541025
Q 000810 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSS 176 (1272)
Q Consensus 100 ~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~~ 176 (1272)
-.|++|++.|.... ..+|||||+|+++-+|||+|++.|.+. ..+..|.++...
T Consensus 14 yeVE~Il~~r~~~~----------------~~~YlVkW~Gy~~~~~TWEp~~nl~~~--------~~i~~f~~~~~~ 66 (73)
T d1guwa_ 14 YVVEKVLDRRVVKG----------------KVEYLLKWKGFSDEDNTWEPEENLDCP--------DLIAEFLQSQKT 66 (73)
T ss_dssp CBEEEECCCBCCTT----------------CCEECEEESSSCTTSCCCEETTTEECH--------HHHHHHHHHHCS
T ss_pred EEEEEEEEEEECCC----------------CEEEEEEECCCCCCCCCCCCHHHCCCH--------HHHHHHHHHHHC
T ss_conf 89999999998299----------------489999979999757758376789998--------999999998565
No 73
>d1g6za_ b.34.13.2 (A:) Histone methyltransferase clr4, chromo domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=96.84 E-value=0.00011 Score=47.05 Aligned_cols=56 Identities=21% Similarity=0.496 Sum_probs=40.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 65433333444667669998433562124467777432588766655467576988731291589889866541025
Q 000810 100 NDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSS 176 (1272)
Q Consensus 100 ~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~~ 176 (1272)
-.|++|++.|.... + . ..+|||||+|+++.+|||+|++.|.. ++ ..+..|.++...
T Consensus 9 yeVE~Il~~R~~~~--~--------~----~~~YlVkW~Gy~~~~~TWEp~~~L~~----~~---~~i~~f~~~~~~ 64 (70)
T d1g6za_ 9 YEVERIVDEKLDRN--G--------A----VKLYRIRWLNYSSRSDTWEPPENLSG----CS---AVLAEWKRRKRR 64 (70)
T ss_dssp SCCCSCSEEECCTT--S--------S----CCEEEECCTTTTSSCCEEECGGGGSS----CH---HHHHHHHHHHTT
T ss_pred EEEEEEEEEEECCC--C--------C----EEEEEEEECCCCCCCCEEECHHHHHH----HH---HHHHHHHHHHHH
T ss_conf 89878999998369--9--------9----59999996899942686644889762----59---999999997465
No 74
>d2dnta1 b.34.13.2 (A:8-73) Chromodomain protein, Y-like isoform {Human (Homo sapiens) [TaxId: 9606]}
Probab=96.77 E-value=8.1e-05 Score=48.09 Aligned_cols=56 Identities=29% Similarity=0.662 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 865433333444667669998433562124467777432588766655467576988731291589889866541025
Q 000810 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSS 176 (1272)
Q Consensus 99 ~~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~~ 176 (1272)
.-.|++||+.|.... + ..+|||||+|+++.+|||+|++.|.. ++ ..+..|.++...
T Consensus 6 ~y~VE~Ild~R~~~~--g-------------~~~YlVkW~Gy~~~~~TWEp~~~l~~----~~---~~i~~f~~~~~~ 61 (66)
T d2dnta1 6 LYEVERIVDKRKNKK--G-------------KTEYLVRWKGYDSEDDTWEPEQHLVN----CE---EYIHDFNRRHTE 61 (66)
T ss_dssp SCCCCCEEEEEECTT--S-------------CEEEEECBTTBCGGGCEEEETTTCTT----CH---HHHHHHHHHHSC
T ss_pred EEEEEEEEEEEECCC--C-------------CEEEEEEECCCCCCCCEEECHHHHHH----HH---HHHHHHHHHCCC
T ss_conf 599999999998599--9-------------59999998889974680732889761----59---999999987626
No 75
>d2pnxa1 g.50.1.2 (A:195-245) Inhibitor of growth protein 4, Ing4 {Homo sapiens [TaxId: 9606]}
Probab=96.68 E-value=0.00025 Score=44.64 Aligned_cols=43 Identities=33% Similarity=0.974 Sum_probs=34.3
Q ss_pred CCCCCCCCC--CCEEECCC--C-CCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222223778--96041488--8-9866657688888999999876776788
Q 000810 52 DSCQACGES--ENLMSCDT--C-TYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 52 ~~C~~C~~~--~~ll~Cd~--C-~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1272)
.+| +|+.. ++||.|+. | ...||..|+ .+...|.++|+||.|..
T Consensus 3 ~yC-~C~~~~~~~mi~Cd~~~C~~~WfH~~Cv--gl~~~p~~~w~C~~C~~ 50 (51)
T d2pnxa1 3 TYC-LCHQVSYGEMIGCDNPDCSIEWFHFACV--GLTTKPRGKWFCPRCSQ 50 (51)
T ss_dssp EET-TTTEECCSEEEECSCTTCSSCEEEGGGG--TCSSCCSSCCCCHHHHC
T ss_pred CEE-ECCCCCCCCEEEEECCCCCCCCEECCCC--CCCCCCCCCEECCCCCC
T ss_conf 378-8179788989888567999877928764--88847998699937779
No 76
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.62 E-value=0.00016 Score=46.02 Aligned_cols=49 Identities=18% Similarity=0.558 Sum_probs=36.4
Q ss_pred CCCCCCCCCCC----CEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 52222237789----6041488898666576888889999-99876776788886
Q 000810 51 DDSCQACGESE----NLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPLN 100 (1272)
Q Consensus 51 ~~~C~~C~~~~----~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 100 (1272)
..+| +|++.. .+|.||.|...||..|+.......+ .+.|+|+.|.....
T Consensus 12 pv~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g 65 (79)
T d1wepa_ 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CEEE-ECCCCCCCCCCEEECCCCCCCEECCCCCCCHHCCCCCCEEECCCCCCCCC
T ss_conf 8684-89896599986888998997396034174510278787789956738768
No 77
>d1pfba_ b.34.13.2 (A:) Polycomb protein, Pc {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=96.54 E-value=8.6e-05 Score=47.89 Aligned_cols=50 Identities=28% Similarity=0.532 Sum_probs=37.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 54333334446676699984335621244677774325887666554675769887312915898898665410
Q 000810 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQM 174 (1272)
Q Consensus 101 ~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~ 174 (1272)
.|++|++.|.... ..+|||||+|+++-+|||+|+..|.+. ..+..|.++.
T Consensus 5 eVE~Il~~r~~~~----------------~~~YlVkW~Gy~~~~~TWEp~~nl~~~--------~li~~f~~~~ 54 (55)
T d1pfba_ 5 AAEKIIQKRVKKG----------------VVEYRVKWKGWNQRYNTWEPEVNILDR--------RLIDIYEQTN 54 (55)
T ss_dssp EEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEEGGGCCST--------HHHHHHHTSC
T ss_pred EEEEEEEEEEECC----------------EEEEEEEECCCCCCCCCCCCHHHCCCH--------HHHHHHHHHC
T ss_conf 9999995899699----------------089999989999989839227679997--------9999999850
No 78
>d1q3la_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=96.48 E-value=9.8e-05 Score=47.49 Aligned_cols=49 Identities=27% Similarity=0.590 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 5433333444667669998433562124467777432588766655467576988731291589889866541
Q 000810 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1272)
Q Consensus 101 ~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~ 173 (1272)
.|++|++.|.... ..+|||||+|+++-+|||+|++.|.+. ..+..|+++
T Consensus 3 eVE~Il~~r~~~~----------------~~~YlVkW~Gy~~~~~tWEp~~~l~~~--------~~i~~f~~~ 51 (52)
T d1q3la_ 3 AVEKIIDRRVRKG----------------MVEYYLKWKGYPETENTWEPENNLDCQ--------DLIQQYEAS 51 (52)
T ss_dssp EEEEEEEEEEETT----------------EEEEEEEETTSCGGGCEEEEGGGEECH--------HHHHHHHHH
T ss_pred EEEEEEEEEEECC----------------EEEEEEEECCCCCCCCCEECHHHCCCH--------HHHHHHHHC
T ss_conf 6999999998299----------------189999989999726717017789987--------999999865
No 79
>d2dnva1 b.34.13.2 (A:7-58) Chromobox protein homolog 8 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.44 E-value=0.00017 Score=45.74 Aligned_cols=41 Identities=37% Similarity=0.657 Sum_probs=32.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 865433333444667669998433562124467777432588766655467576988
Q 000810 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (1272)
Q Consensus 99 ~~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~ 155 (1272)
.-.|++|++.|.+.. ..+|||||+|+++-+|||+|++.|.+
T Consensus 4 ~yeVE~Il~~r~~~~----------------~~~YlVkW~gy~~~~~TWEp~~nl~~ 44 (52)
T d2dnva1 4 VFAAEALLKRRIRKG----------------RMEYLVKWKGWSQKYSTWEPEENILD 44 (52)
T ss_dssp CCCCCCEEEEEESSS----------------SEEEEECCSSCCCSSCCEEETTTCCC
T ss_pred EEEEEEEEEEEEECC----------------EEEEEEEECCCCCCCCEECCHHHCCC
T ss_conf 499999999999699----------------49999998879974780723789999
No 80
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.27 E-value=5.8e-05 Score=49.13 Aligned_cols=49 Identities=22% Similarity=0.626 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCC---CCCEEECCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCC
Q ss_conf 665522222377---89604148889866657688888-----999999876776788
Q 000810 48 DAKDDSCQACGE---SENLMSCDTCTYAYHAKCLVPPL-----KAPPSGSWRCPECVS 97 (1272)
Q Consensus 48 ~~~~~~C~~C~~---~~~ll~Cd~C~~~~H~~Cl~p~l-----~~~p~~~W~C~~C~~ 97 (1272)
+.+..+| +|+. ++.||.|+.|...||..|+..+. ...+...|+|+.|..
T Consensus 13 d~~~~~C-iC~~~~~~~~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~ 69 (76)
T d1wema_ 13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTI 69 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHH
T ss_pred CCCCCEE-ECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9995887-89992599818887999976995106887010111478998189979818
No 81
>d1x3pa1 b.34.13.2 (A:1-54) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=96.09 E-value=0.00054 Score=42.20 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=35.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 543333344466766999843356212446777743258876665546757698873129158988986654102
Q 000810 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1272)
Q Consensus 101 ~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~~~~~~~~~~~kl~~f~k~~~ 175 (1272)
-+++|++.|+.+... ..||||||+|++ ++||+|++.|. + ..+..|.++..
T Consensus 2 vvE~Il~~R~~~~~~--------------~~eYlVkW~gy~--~~TWEP~~nl~------~---~li~~f~~~~p 51 (54)
T d1x3pa1 2 VAESVIGKRVGDDGK--------------TIEYLVKWTDMS--DATWEPQDNVD------S---TLVLLYQQQQP 51 (54)
T ss_dssp CSSCCCCBSSCSSSC--------------CCCBCCCCSSSS--SCSCSTTCCSS------S---SSHHHHTSSCC
T ss_pred HHHHHHHHHCCCCCC--------------EEEEEEEECCCC--CCCCCCHHHCC------H---HHHHHHHHHCC
T ss_conf 778998877037898--------------089998889998--78720058777------9---99999998473
No 82
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=95.66 E-value=0.0012 Score=39.66 Aligned_cols=48 Identities=25% Similarity=0.713 Sum_probs=32.1
Q ss_pred CCCCCCCCCC---CCEEECC--CCCCCCCCCCCCCC---CCCC--CCCCCCCCCCCCCC
Q ss_conf 5222223778---9604148--88986665768888---8999--99987677678888
Q 000810 51 DDSCQACGES---ENLMSCD--TCTYAYHAKCLVPP---LKAP--PSGSWRCPECVSPL 99 (1272)
Q Consensus 51 ~~~C~~C~~~---~~ll~Cd--~C~~~~H~~Cl~p~---l~~~--p~~~W~C~~C~~~~ 99 (1272)
...| +|+.. +.++.|+ .|...||..|+.-. +... ....|+|+.|....
T Consensus 16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T d1wewa_ 16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEE-ECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
T ss_conf 5483-899941788678886898986798001176632422456899989897884858
No 83
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=95.04 E-value=0.079 Score=26.69 Aligned_cols=48 Identities=15% Similarity=0.197 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCC---CEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf 992889999999998331798---569990899809999999999984089
Q 000810 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 285 ~LrpyQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
.++|+|......|...+.++. ..||.-+.|+|||..+..++..+....
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~ 52 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQ 52 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
T ss_conf 987121999999999998599673798889998759999999998210101
No 84
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=94.50 E-value=0.11 Score=25.78 Aligned_cols=74 Identities=26% Similarity=0.294 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHCCCC-CEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCH-HHHHHHHHHHCCCCEEEEEEC
Q ss_conf 89999999998331798-5699908998099999999999840899967999667128-999999998879990999975
Q 000810 289 YQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQMNVVMYVG 366 (1272)
Q Consensus 289 yQlegv~wL~~~~~~~~-~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~~~~p~~~vv~~~G 366 (1272)
-|=++++-+......|. ...|.--+|+|||+.+.+++..+ .+|+|||||.... .+|.+++..|+|+..+..+..
T Consensus 15 DQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~----~rp~LVVt~n~~~A~qL~~dL~~~l~~~~v~~f~~ 90 (413)
T d1t5la1 15 DQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQV----NKPTLVIAHNKTLAGQLYSELKEFFPHNAVEYFVS 90 (413)
T ss_dssp THHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEECSSHHHHHHHHHHHHHHCTTSEEEEECC
T ss_pred CCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf 88899999999986599858996778748999999999973----99989994899999999999998748774543242
No 85
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=94.46 E-value=0.0018 Score=38.45 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 8769788999999997621670577530823583699888835998778899
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP 1133 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~ 1133 (1272)
+.||.|||..|+.||.+||-|+|..|..+....+..++...+..|..+++-+
T Consensus 1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~ 52 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9989999999999999978655999999987542699989999999998513
No 86
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=94.38 E-value=0.017 Score=31.53 Aligned_cols=31 Identities=32% Similarity=0.442 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 9876978899999999762167057753082
Q 000810 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~k~Gyg~we~Ik~D~ 1111 (1272)
...||+|||..|+.+|.+||.|+|..|....
T Consensus 2 r~~WT~eED~~L~~~v~~~G~~~W~~I~~~~ 32 (52)
T d1w0ta_ 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHY 32 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHC
T ss_conf 8998999999999999997899899987465
No 87
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=94.31 E-value=0.12 Score=25.50 Aligned_cols=130 Identities=15% Similarity=0.101 Sum_probs=93.3
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 85058999999999999999999993289602699999999998178653458899954606999998842127999999
Q 000810 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1272)
Q Consensus 536 v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~SgKl~~L~k 615 (1272)
++.++|..|+..++.|..... .-..-..|+.+. -.|||..+...
T Consensus 80 LPFeLT~~Q~~ai~ei~~d~~---------------------~~~~m~rLL~Gd---------------vGSGKT~Va~~ 123 (264)
T d1gm5a3 80 LPFKLTNAQKRAHQEIRNDMI---------------------SEKPMNRLLQGD---------------VGSGKTVVAQL 123 (264)
T ss_dssp SSSCCCHHHHHHHHHHHHHHH---------------------SSSCCCCEEECC---------------SSSSHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHH---------------------CCCCCEEEEECC---------------CCCCCCHHHHH
T ss_conf 046678037888999998762---------------------367531566635---------------35566599999
Q ss_pred HHHHHHHCCCEEEEEECCHHH----HHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCC-CCC
Q ss_conf 999999708628998212226----999999987279808999577898999999999712699942899624533-345
Q 000810 616 MMVKLKEQGHRVLIYSQFQHM----LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLG 690 (1272)
Q Consensus 616 lL~~l~~~g~kVLIFsq~~~~----ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTrag-g~G 690 (1272)
.+......|.+|++.+--... ...+..++...|+....++|+++..+|..+.....++... +++.|++. -..
T Consensus 124 a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~---iiIGThsl~~~~ 200 (264)
T d1gm5a3 124 AILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQID---VVIGTHALIQED 200 (264)
T ss_dssp HHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCC---EEEECTTHHHHC
T ss_pred HHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHCCCCC---EEEEEHHHHCCC
T ss_conf 99998851355058740476657899999886201231211101101369999999999779979---999653885489
Q ss_pred CCCCCCCEEEEECC
Q ss_conf 47567888999669
Q 000810 691 INLATADTVIIYDS 704 (1272)
Q Consensus 691 INL~~Ad~VIi~D~ 704 (1272)
+.+.....||+=+-
T Consensus 201 ~~f~~LglviiDEq 214 (264)
T d1gm5a3 201 VHFKNLGLVIIDEQ 214 (264)
T ss_dssp CCCSCCCEEEEESC
T ss_pred CCCCCCCEEEECCC
T ss_conf 87455622563242
No 88
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.78 E-value=0.026 Score=30.15 Aligned_cols=28 Identities=32% Similarity=0.832 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 8769788999999997621670577530
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~ 1109 (1272)
..||.+||..||-+|.+||.++|..|-.
T Consensus 2 ~~Wt~eEd~~L~~~v~~~G~~nW~~Ia~ 29 (47)
T d1x41a1 2 PSWTAQEEMALLEAVMDCGFGNWQDVAN 29 (47)
T ss_dssp SSSCHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 4989999999999999988760999997
No 89
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=93.72 E-value=0.03 Score=29.68 Aligned_cols=30 Identities=33% Similarity=0.589 Sum_probs=24.5
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf 798569990899809999999999984089
Q 000810 303 KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
...+.||.-..|.|||..+.+++..+....
T Consensus 32 ~~~~lll~Gp~G~GKTt~~~~la~~l~~~~ 61 (252)
T d1sxje2 32 DLPHLLLYGPNGTGKKTRCMALLESIFGPG 61 (252)
T ss_dssp CCCCEEEECSTTSSHHHHHHTHHHHHSCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHCCCC
T ss_conf 878599889999988999999997622764
No 90
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=93.69 E-value=0.016 Score=31.74 Aligned_cols=47 Identities=28% Similarity=0.618 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 752111242213689862378640444535442244555342258999999
Q 000810 190 EWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFI 240 (1272)
Q Consensus 190 ~~~~veRIi~~r~~~~~~eyLVKWk~L~Y~~~tWE~~~~~~~~~~~i~~f~ 240 (1272)
+|..|++|++.|..+...+|||+|++= .+.+|.....|. ...+..|.
T Consensus 4 ey~EV~~Il~~R~~g~~~EYLVeWkDg--~~~sWV~a~~Ia--~Dvv~dfE 50 (55)
T d2huga1 4 EYAEVDEIVEKRGKGKDVEYLVRWKDG--GDCEWVKGVHVA--EDVAKDYE 50 (55)
T ss_dssp CCCCSSCCCCCCCSSBCCCCEEECTTS--SSEEECCTTBCC--HHHHHTTH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCC--CCCCCCCHHHHH--HHHHHHHH
T ss_conf 134099998531359981798887579--997641278778--99999998
No 91
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=93.65 E-value=0.03 Score=29.76 Aligned_cols=30 Identities=30% Similarity=0.532 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 876978899999999762167057753082
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~D~ 1111 (1272)
..||++||..|+.+|.+||-|+|..|....
T Consensus 3 ~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~ 32 (55)
T d1w0ua_ 3 QKWTVEESEWVKAGVQKYGEGNWAAISKNY 32 (55)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_conf 998999999999999981897199988666
No 92
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=92.94 E-value=0.13 Score=25.21 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC---CCCCEEEEECCCCH-HHHHHHHHH
Q ss_conf 99288999999999833179856999089980999999999998408---99967999667128-999999998
Q 000810 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTL-RNWEREFAT 354 (1272)
Q Consensus 285 ~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~---~~~p~LIVvP~sll-~qW~~E~~~ 354 (1272)
+|.|-|.++|.| ..+..++.-..|+|||.+.+.-+.++... ....+||++++... ..-...+.+
T Consensus 1 ~L~~eQ~~av~~------~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~ 68 (306)
T d1uaaa1 1 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 68 (306)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC------CCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHEEEEECCHHHHHHHHHHHHH
T ss_conf 969899999819------99998999628843899999999999995699955789996869999999999998
No 93
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=92.18 E-value=0.24 Score=23.22 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHCCC---CCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999999833179---856999089980999999999998408
Q 000810 291 LEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 291 legv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
-+.+.+|.....++ ...||.-+.|.|||..+..++..+...
T Consensus 18 ~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~ 61 (239)
T d1njfa_ 18 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61 (239)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99999999999859987059888899875899999999984685
No 94
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.53 E-value=0.066 Score=27.25 Aligned_cols=29 Identities=34% Similarity=0.633 Sum_probs=25.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCC
Q ss_conf 87697889999999976216705775308
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~D 1110 (1272)
..||.+||..|+..|.+||.++|..|-.-
T Consensus 4 g~WT~eED~~L~~~v~~~g~~~W~~Ia~~ 32 (52)
T d1gvda_ 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKH 32 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCTTCHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 99899999999999999788979999999
No 95
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=91.43 E-value=0.07 Score=27.06 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=26.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHCCC
Q ss_conf 876978899999999762167057753082
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~D~ 1111 (1272)
..||.+||..|+.+|.+||.++|..|-.-.
T Consensus 2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~ 31 (50)
T d1guua_ 2 TRWTREEDEKLKKLVEQNGTDDWKVIANYL 31 (50)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 798999999999999997889999999887
No 96
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=90.55 E-value=0.35 Score=22.10 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC-C--CCEEEEECCCCHHH
Q ss_conf 992889999999998331798569990899809999999999984089-9--96799966712899
Q 000810 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLSTLRN 347 (1272)
Q Consensus 285 ~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~--~p~LIVvP~sll~q 347 (1272)
.|.+-|.++|++ ..+..++.-..|+|||.+.+.-+.++...+ . ..+|+++++....+
T Consensus 11 ~L~~eQ~~~v~~------~~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~ 70 (318)
T d1pjra1 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAR 70 (318)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHH
T ss_pred HCCHHHHHHHHC------CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHH
T ss_conf 678999999829------999989995298668999999999999808998789375766498999
No 97
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=90.06 E-value=0.38 Score=21.82 Aligned_cols=52 Identities=19% Similarity=0.028 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC--CCEEEEECC
Q ss_conf 99999999983317985699908998099999999999840899--967999667
Q 000810 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI--SPHLVVAPL 342 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~--~p~LIVvP~ 342 (1272)
|++-++.++.. ..+.+.|+..+.|.|||-.++.+..++..... .-++++.|.
T Consensus 2 ~~~~l~~~i~~-~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~ 55 (198)
T d2gnoa2 2 QLETLKRIIEK-SEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE 55 (198)
T ss_dssp HHHHHHHHHHT-CSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS
T ss_pred HHHHHHHHHHC-CCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECC
T ss_conf 78999999966-9985599889899888999999999984345679988998077
No 98
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.54 E-value=0.089 Score=26.32 Aligned_cols=49 Identities=31% Similarity=0.758 Sum_probs=35.4
Q ss_pred CCCCCCCCC--CCCCEEECCCCCCCCCCCCCCCCC--C----------CCCCCCCCCCCCCCC
Q ss_conf 552222237--789604148889866657688888--9----------999998767767888
Q 000810 50 KDDSCQACG--ESENLMSCDTCTYAYHAKCLVPPL--K----------APPSGSWRCPECVSP 98 (1272)
Q Consensus 50 ~~~~C~~C~--~~~~ll~Cd~C~~~~H~~Cl~p~l--~----------~~p~~~W~C~~C~~~ 98 (1272)
++..|.+|. .+..++-|-.|.+.||-.||.--- . .-..-.|.|+.|.+-
T Consensus 14 ~D~mC~vC~v~t~~~l~pCRvCtRv~H~~CL~r~gyl~~e~a~e~~e~A~T~~GWSC~~C~nl 76 (89)
T d1wila_ 14 NDEMCDVCEVWTAESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNI 76 (89)
T ss_dssp CSCCCTTTCCCCSSCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCC
T ss_pred CCCCCCCCCCCCCCCEECCEEECCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHCCH
T ss_conf 676236567433454023213341124788988510244899999986047888310221225
No 99
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=88.89 E-value=0.38 Score=21.83 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=27.3
Q ss_pred HHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 899999-9999833179856999089980999999999998408
Q 000810 289 YQLEGL-NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 289 yQlegv-~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+.-+ +|+. . .+..+.||.-..|.|||..+-.++..+...
T Consensus 22 ~~~~~L~~~~~-~-~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~ 63 (224)
T d1sxjb2 22 ETIDRLQQIAK-D-GNMPHMIISGMPGIGKTTSVHCLAHELLGR 63 (224)
T ss_dssp HHHHHHHHHHH-S-CCCCCEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHH-C-CCCCEEEEECCCCCCCHHHHHHHHHHHHCC
T ss_conf 99999999998-6-998749998899987054699999997256
No 100
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=88.37 E-value=0.2 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHCCCCC-CCHHHHCHHHCCCCHHHHHHHHHH
Q ss_conf 578999999998518996-434223123028999999999999
Q 000810 971 QNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGIL 1012 (1272)
Q Consensus 971 ~~~rr~F~~a~~kyG~~~-~~~~~i~~el~~Ks~~Evk~Y~~~ 1012 (1272)
.-+-..|.+++++||.+. ..|..|+..|.++|..+++.....
T Consensus 6 ~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~ 48 (63)
T d2cjja1 6 AKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI 48 (63)
T ss_dssp HHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 9999999999999777883499999989599999999999999
No 101
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=87.62 E-value=0.55 Score=20.68 Aligned_cols=76 Identities=24% Similarity=0.271 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHHHCCCCC-EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC-HHHHHHHHHHHCCCCEEEE
Q ss_conf 928899999999983317985-69990899809999999999984089996799966712-8999999998879990999
Q 000810 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVVM 363 (1272)
Q Consensus 286 LrpyQlegv~wL~~~~~~~~~-~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~p~~~vv~ 363 (1272)
...-|-++++-|......+.+ ..|.--.|++|++.+.+++..+ .+|+|||||... ..+|.+++..|.++..+..
T Consensus 9 p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~----~rp~LvVt~~~~~A~~l~~dL~~~l~~~~v~~ 84 (408)
T d1c4oa1 9 PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL----GRPALVLAPNKILAAQLAAEFRELFPENAVEY 84 (408)
T ss_dssp CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH----TCCEEEEESSHHHHHHHHHHHHHHCTTSEEEE
T ss_pred CCCCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHH----CCCEEEEECCHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99877999999999986699737985688878999999999985----99999991899999999999998647664556
Q ss_pred EE
Q ss_conf 97
Q 000810 364 YV 365 (1272)
Q Consensus 364 ~~ 365 (1272)
+.
T Consensus 85 fp 86 (408)
T d1c4oa1 85 FI 86 (408)
T ss_dssp CC
T ss_pred CC
T ss_conf 77
No 102
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=84.06 E-value=0.52 Score=20.85 Aligned_cols=29 Identities=24% Similarity=0.462 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC---CHHHHHC
Q ss_conf 9876978899999999762167---0577530
Q 000810 1081 GKFWKEEHDSLLLRAVLKHGYG---RWQAIVD 1109 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~k~Gyg---~we~Ik~ 1109 (1272)
...||.+||..|+.+|.+||-| +|..|-.
T Consensus 12 ~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~ 43 (60)
T d2cqra1 12 EEPWTQNQQKLLELALQQYPRGSSDCWDKIAR 43 (60)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
T ss_conf 98969999999999999808866459999998
No 103
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=83.63 E-value=0.48 Score=21.13 Aligned_cols=27 Identities=33% Similarity=0.721 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHC
Q ss_conf 8769788999999997621670577530
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVD 1109 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~we~Ik~ 1109 (1272)
..||.|||..||.++.+||- +|..|-.
T Consensus 2 ~~WT~eED~~L~~~v~~~G~-~W~~Ia~ 28 (47)
T d1gv2a2 2 TSWTEEEDRIIYQAHKRLGN-RWAEIAK 28 (47)
T ss_dssp CCCCHHHHHHHHHHHHHHSS-CHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHH-HHHHHHH
T ss_conf 89999999999999999863-8999996
No 104
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=82.60 E-value=0.91 Score=19.09 Aligned_cols=97 Identities=10% Similarity=0.051 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH----HHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 212799999999999970862899821222699999998----7279808999577898999999999712699942899
Q 000810 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1272)
Q Consensus 606 ~SgKl~~L~klL~~l~~~g~kVLIFsq~~~~ldiL~~~L----~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfL 681 (1272)
.|||..+....+......|.+|++.+--.....-+...+ ..-+..+..++|..+..+|..+.....++... ++
T Consensus 86 GsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~---iv 162 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID---IL 162 (233)
T ss_dssp CTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCS---EE
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHCCCCC---EE
T ss_conf 877289999999999976895699746887679999999998724797797635765312699999999679978---89
Q ss_pred EECCCCC-CCCCCCCCCEEEEECCC
Q ss_conf 6245333-45475678889996699
Q 000810 682 LSTRAGG-LGINLATADTVIIYDSD 705 (1272)
Q Consensus 682 lSTragg-~GINL~~Ad~VIi~D~d 705 (1272)
+.|++.- ..+.+...-.||+-+-.
T Consensus 163 iGths~l~~~~~f~~LgLiIiDEeH 187 (233)
T d2eyqa3 163 IGTHKLLQSDVKFKDLGLLIVDEEH 187 (233)
T ss_dssp EECTHHHHSCCCCSSEEEEEEESGG
T ss_pred EEEHHHHCCCCCCCCCCCEEEECHH
T ss_conf 7420233067765554630222312
No 105
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.99 E-value=0.94 Score=19.00 Aligned_cols=45 Identities=13% Similarity=0.355 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHH
Q ss_conf 989578999999998518996434223123028999999999999998
Q 000810 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLT 1015 (1272)
Q Consensus 968 GF~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~ 1015 (1272)
.+|.-+...|..++.+||. +|..|+..|.+||..+|+.|...+..
T Consensus 7 ~WT~eE~~~f~~~~~~~G~---~w~~Ia~~~~~kt~~q~~~~y~~~~k 51 (65)
T d2iw5b1 7 RWTTEEQLLAVQAIRKYGR---DFQAISDVIGNKSVVQVKNFFVNYRR 51 (65)
T ss_dssp SCCHHHHHHHHHHHHHHSS---CHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHCC---HHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 9899999999999999396---09999978499999999999999996
No 106
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=80.76 E-value=1.1 Score=18.65 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=25.4
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1798569990899809999999999984089
Q 000810 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
....|.+|.-+.|.|||..+-.+...+....
T Consensus 37 ~~k~n~lLVG~~GvGKTalv~~la~ri~~~~ 67 (268)
T d1r6bx2 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 67 (268)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTC
T ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 7668967988898867799999999998178
No 107
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=78.94 E-value=1.2 Score=18.25 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCC-C--CCEEEEECCC
Q ss_conf 9992889999999998331798569990899809999999999984089-9--9679996671
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLS 343 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~--~p~LIVvP~s 343 (1272)
..|.+-|.++|. ...+++++....|+|||.+.+.-+.++...+ . ..+|+|+.+.
T Consensus 10 ~~L~~eQ~~~v~------~~~~~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~ 66 (623)
T g1qhh.1 10 AHLNKEQQEAVR------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66 (623)
T ss_dssp TTSCHHHHHHHH------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSH
T ss_pred HHCCHHHHHHHC------CCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
T ss_conf 736999999973------999998999818658999999999999980998933099994419
No 108
>d2huga1 b.34.13.2 (A:3-57) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=78.26 E-value=0.2 Score=23.89 Aligned_cols=39 Identities=26% Similarity=0.603 Sum_probs=29.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
Q ss_conf 865433333444667669998433562124467777432588766655467576988
Q 000810 99 LNDIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLK 155 (1272)
Q Consensus 99 ~~~iekIL~~R~rP~~~~~~~~~~~~~k~~~~~eYlVKWkg~Sy~h~~Wvpe~~L~~ 155 (1272)
...+++|+.+|..-. ..||||+|++-+ .++|+|+..+..
T Consensus 5 y~EV~~Il~~R~~g~----------------~~EYLVeWkDg~--~~sWV~a~~Ia~ 43 (55)
T d2huga1 5 YAEVDEIVEKRGKGK----------------DVEYLVRWKDGG--DCEWVKGVHVAE 43 (55)
T ss_dssp CCCSSCCCCCCCSSB----------------CCCCEEECTTSS--SEEECCTTBCCH
T ss_pred HHHHHHHHHHHCCCC----------------CEEEEEEECCCC--CCCCCCHHHHHH
T ss_conf 340999985313599----------------817988875799--976412787789
No 109
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.41 E-value=1.3 Score=17.95 Aligned_cols=44 Identities=20% Similarity=0.314 Sum_probs=28.9
Q ss_pred CCHHHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 928899999-9999833179856999089980999999999998408
Q 000810 286 LHPYQLEGL-NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 286 LrpyQlegv-~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
-.+..++-+ +|+ ... .-.+.||.-..|+|||..+-+++..+...
T Consensus 18 g~~~~~~~L~~~i-~~~-~~~~lLl~Gp~G~GKttl~~~la~~l~~~ 62 (227)
T d1sxjc2 18 GQNEVITTVRKFV-DEG-KLPHLLFYGPPGTGKTSTIVALAREIYGK 62 (227)
T ss_dssp SCHHHHHHHHHHH-HTT-CCCCEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHH-HCC-CCCEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 9699999999999-769-99859998899877558999999985167
No 110
>d2fmma1 b.34.13.2 (A:108-175) Heterochromatin protein 1, HP1 {Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId: 10090]}
Probab=75.69 E-value=0.29 Score=22.67 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCHHHHHHHCCCCCCCEEEEECCCCCCCC
Q ss_conf 21112422136898623786404445354
Q 000810 192 TTVDRILACRGEDDEKEYLVKYKELSYDE 220 (1272)
Q Consensus 192 ~~veRIi~~r~~~~~~eyLVKWk~L~Y~~ 220 (1272)
+.+|+|++....+|+..|||||+|++--+
T Consensus 10 l~~ekIig~t~~~gel~flvkwk~~d~~d 38 (68)
T d2fmma1 10 LEPERIIGATDSSGELMFLMKWKNSDEAD 38 (68)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTCSCCE
T ss_pred CCCCEEEEEECCCCEEEEEEEECCCCHHH
T ss_conf 88417887474699499999988898465
No 111
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=75.19 E-value=1.1 Score=18.53 Aligned_cols=50 Identities=8% Similarity=0.130 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 89578999999998518996434223123028999999999999998541
Q 000810 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHIT 1018 (1272)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~~~~ 1018 (1272)
+|.-+=|..+..|.++|-....|..|+..|.++|..+|+.=...+|..+.
T Consensus 36 WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~ 85 (95)
T d1ug2a_ 36 WTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 57888899999999839948799999998589999999999999999999
No 112
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=75.01 E-value=1.5 Score=17.51 Aligned_cols=39 Identities=13% Similarity=0.025 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 985699908998099999999999840899967999667
Q 000810 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~ 342 (1272)
+.-.+|.-.+|.|||.++.=+..++...+.+..||-+..
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 779999899999889999999999997799079998136
No 113
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}
Probab=74.83 E-value=0.087 Score=26.42 Aligned_cols=50 Identities=24% Similarity=0.368 Sum_probs=35.6
Q ss_pred CCCCCCCCCCCCCCC---EE--ECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 665522222377896---04--14888986665768888899999987677678888
Q 000810 48 DAKDDSCQACGESEN---LM--SCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 48 ~~~~~~C~~C~~~~~---ll--~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
+.+...|.+|..... +. .|.+|...||..||...+.. .+.+.||.|..+.
T Consensus 3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~--~~~~~CP~Cr~~~ 57 (60)
T d1vyxa_ 3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI--SRNTACQICGVVY 57 (60)
T ss_dssp TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH--HTCSBCTTTCCBC
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEECHHHHHHHHHH--CCCCCCCCCCCEE
T ss_conf 888999923886277751673145897788738999999710--7898891669712
No 114
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.56 E-value=1.4 Score=17.70 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHCHHHCCCCHHHHHHHHH
Q ss_conf 8957899999999851899643422312302899999999999
Q 000810 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGI 1011 (1272)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~ 1011 (1272)
||.-+...|+.++.+||. +|..|+..|.+||..+|+.|.-
T Consensus 20 WT~eE~~~f~~~~~~~G~---~w~~Ia~~~~~rt~~q~~~~yy 59 (68)
T d1xc5a1 20 WSEQEKETFREKFMQHPK---NFGLIASFLERKTVAECVLYYY 59 (68)
T ss_dssp CCTTTHHHHHHHHHHTTS---CSSSHHHHTTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC---CHHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999999887---6999998769979999999999
No 115
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.43 E-value=1.6 Score=17.42 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CCHHHHCHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 89578999999998518996-43422312302899999999999999854
Q 000810 969 FSQNQRAAFVQILMRFGVGD-FDWKEFTPRLKQKSYEEIREYGILFLTHI 1017 (1272)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~-~~~~~i~~el~~Ks~~Evk~Y~~~F~~~~ 1017 (1272)
+|.-+...|.+++.+|..+- .+|+.|+..+ +||.+||..+++..-+-.
T Consensus 4 WT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~~ 52 (59)
T d2cqqa1 4 WTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV 52 (59)
T ss_dssp CCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999887999717999999998-979999999999999856
No 116
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}
Probab=72.26 E-value=1.1 Score=18.50 Aligned_cols=43 Identities=26% Similarity=0.510 Sum_probs=32.5
Q ss_pred CCCCCCCCC----CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 222223778----96041488898666576888889999998767767888
Q 000810 52 DSCQACGES----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 52 ~~C~~C~~~----~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~ 98 (1272)
..|.+|.+. +.++.+..|...||..|+...+..-. .||.|+.+
T Consensus 6 ~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~ 52 (55)
T d1iyma_ 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS----TCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCC----SCSSSCCC
T ss_pred CCCEEECCCCCCCCEEEEECCCCCCCCHHHHHHHHHHCC----CCCCCCCE
T ss_conf 998497900107988999089898105999999998499----38788978
No 117
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.74 E-value=2 Score=16.69 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCCCHHHHCHH-HCCCCHHHHHHHHHHHHHH
Q ss_conf 5989578999999998518996434223123-0289999999999999985
Q 000810 967 LGFSQNQRAAFVQILMRFGVGDFDWKEFTPR-LKQKSYEEIREYGILFLTH 1016 (1272)
Q Consensus 967 ~GF~~~~rr~F~~a~~kyG~~~~~~~~i~~e-l~~Ks~~Evk~Y~~~F~~~ 1016 (1272)
..+|+-+++.|..++..||. +|..|+.. +.+||..+|..|.= .|.+
T Consensus 2 d~WT~eE~~~F~~~~~~yGK---df~~I~~~~v~~Ks~~~~v~fYY-~~Kk 48 (57)
T d2crga1 2 EEWSASEACLFEEALEKYGK---DFNDIRQDFLPWKSLTSIIEYYY-MWKT 48 (57)
T ss_dssp CCCCHHHHHHHHHHHHHTCS---CHHHHHHTTCSSSCHHHHHHHHH-HHHT
T ss_pred CCCCHHHHHHHHHHHHHHCC---CHHHHHHHHCCCCCHHHHHHHHH-HHHC
T ss_conf 98999999999999999762---59999999949998999999999-9828
No 118
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=69.25 E-value=2 Score=16.62 Aligned_cols=43 Identities=28% Similarity=0.532 Sum_probs=28.5
Q ss_pred CHHHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 28899999-9999833179856999089980999999999998408
Q 000810 287 HPYQLEGL-NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 287 rpyQlegv-~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.+..+..+ +|+ .. .+..+.||.-+.|+|||..+-+++..+...
T Consensus 29 ~~~~~~~l~~~i-~~-~~~~~lll~Gp~G~GKTtla~~iak~l~~~ 72 (231)
T d1iqpa2 29 QEHIVKRLKHYV-KT-GSMPHLLFAGPPGVGKTTAALALARELFGE 72 (231)
T ss_dssp CHHHHHHHHHHH-HH-TCCCEEEEESCTTSSHHHHHHHHHHHHHGG
T ss_pred CHHHHHHHHHHH-HC-CCCCEEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 399999999999-85-999769997899974879999999998731
No 119
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=66.41 E-value=2.3 Score=16.23 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEE
Q ss_conf 6999089980999999999998408999679996671289999999988799909
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~v 361 (1272)
.+|.-.+|.|||.++.=+.+.+...+. ++.+|+--.--..=...++.|+-.+.+
T Consensus 12 i~lvGptGvGKTTTiAKLA~~~~~~g~-kV~lit~Dt~R~gA~eQL~~~a~~l~v 65 (211)
T d2qy9a2 12 ILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDTFRAAAVEQLQVWGQRNNI 65 (211)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTC-CEEEECCCTTCHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 999899999989999999999997799-479982321366612045554343388
No 120
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=65.73 E-value=2.1 Score=16.53 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHHHCCCC-----HHHHHCCCCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 8769788999999997621670-----5775308235836998888359987788999
Q 000810 1082 KFWKEEHDSLLLRAVLKHGYGR-----WQAIVDDKDLKVQEVICQELNLPFINLPVPG 1134 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~k~Gyg~-----we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~ 1134 (1272)
..||.|||..|+-.|.+||-.+ |..|-.- |..++......|..+-+.|+
T Consensus 2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~----lpgRt~~qcr~Rw~~~L~p~ 55 (86)
T d1igna1 2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHY----VPNHTGNSIRHRFRVYLSKR 55 (86)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTT----STTSCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH----CCCCCHHHHHHHHHHHCCCC
T ss_conf 8989999999999999968676774689999978----68987889999999870832
No 121
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=65.18 E-value=0.37 Score=21.89 Aligned_cols=51 Identities=25% Similarity=0.572 Sum_probs=34.1
Q ss_pred CCCCCCCCCCC------------------CCEEECCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
Q ss_conf 55222223778------------------96041488898666576888889999-99876776788886
Q 000810 50 KDDSCQACGES------------------ENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSPLN 100 (1272)
Q Consensus 50 ~~~~C~~C~~~------------------~~ll~Cd~C~~~~H~~Cl~p~l~~~p-~~~W~C~~C~~~~~ 100 (1272)
.++.|.+|... ...++...|...||..|+...+.... .+.-.||.|+...+
T Consensus 24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T d1v87a_ 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred CCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHC
T ss_conf 5653453010001344433543334545543468799999056999999999667578976655012206
No 122
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=64.41 E-value=2.5 Score=15.97 Aligned_cols=41 Identities=27% Similarity=0.408 Sum_probs=26.9
Q ss_pred HHHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHH
Q ss_conf 8899999-999983317985699908998099999999999840
Q 000810 288 PYQLEGL-NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 288 pyQlegv-~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+..++.+ +|+. . ....+.||.-+.|+|||..+-+++..+..
T Consensus 18 ~~~~~~l~~~i~-~-~~~~~lll~Gp~G~GKTtl~~~i~~~l~~ 59 (237)
T d1sxjd2 18 DHAVTVLKKTLK-S-ANLPHMLFYGPPGTGKTSTILALTKELYG 59 (237)
T ss_dssp CTTHHHHHHHTT-C-TTCCCEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-C-CCCCEEEEECCCCCCHHHHHHHHHHHHCC
T ss_conf 999999999998-6-99885999899999849999999999709
No 123
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=63.89 E-value=2.6 Score=15.90 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=34.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 69990899809999999999984089996799966712899999999887999099997
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~ 365 (1272)
.+|.-.+|.|||.++.=+.+++...+.+..||-+..--.. =...++.|+-.+.+-++.
T Consensus 14 i~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~g-A~eQL~~~a~~l~i~~~~ 71 (213)
T d1vmaa2 14 IMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA-AIEQLKIWGERVGATVIS 71 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH-HHHHHHHHHHHHTCEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCCC
T ss_conf 9998999998899999999999977990699960133420-467888776432764103
No 124
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.05 E-value=2.9 Score=15.56 Aligned_cols=45 Identities=16% Similarity=0.488 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHCHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 895789999999985189964342231230289999999999999985
Q 000810 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1272)
Q Consensus 969 F~~~~rr~F~~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~~F~~~ 1016 (1272)
||.-+-..|+.++..||. +|..|+..|.++|..+|+.+..-++..
T Consensus 5 WT~eEd~~l~~~~~~~G~---~W~~Ia~~~~~Rt~~q~k~ry~~~~~~ 49 (65)
T d2cu7a1 5 WTIEEKELFEQGLAKFGR---RWTKISKLIGSRTVLQVKSYARQYFKN 49 (65)
T ss_dssp CCHHHHHHHHHHHHHTCS---CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCC---HHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 799999999999998652---499999892999999999999999779
No 125
>d3deoa1 b.34.13.2 (A:85-128) CpSRP43 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=58.36 E-value=2.4 Score=16.08 Aligned_cols=36 Identities=28% Similarity=0.506 Sum_probs=25.0
Q ss_pred CHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 1112422136-8986237864044453544224455534
Q 000810 193 TVDRILACRG-EDDEKEYLVKYKELSYDECYWEYESDIS 230 (1272)
Q Consensus 193 ~veRIi~~r~-~~~~~eyLVKWk~L~Y~~~tWE~~~~~~ 230 (1272)
+|.+||+.|. .+|..+||+-|++= -.-+|.....|.
T Consensus 1 ev~kIi~sR~~~dgg~eYliEWkD~--h~pSWvP~~~IA 37 (44)
T d3deoa1 1 EVNKIIGSRTAGEGAMEYLIEWKDG--HSPSWVPSSYIA 37 (44)
T ss_dssp CEEEEEEEEEETTTEEEEEEEETTC--CCCEEEEGGGSC
T ss_pred CCCHHCCEEECCCCCEEEEEEECCC--CCCCCCCHHHHH
T ss_conf 9150001001478960688875068--988757877877
No 126
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.21 E-value=2.1 Score=16.45 Aligned_cols=56 Identities=18% Similarity=0.459 Sum_probs=38.7
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 46655222223778960414888986665768888899999987677678888654333
Q 000810 47 IDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKI 105 (1272)
Q Consensus 47 ~~~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~iekI 105 (1272)
.+.....|.+|.+...-..-..|.-.||..|+...+.. +.=.||.|+......+.+
T Consensus 19 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~---~~~~CP~Cr~~i~~~~~i 74 (79)
T d1fbva4 19 MGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES---EGQGCPFCRCEIKGTEPI 74 (79)
T ss_dssp TSCCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHT---TCCSCTTTCCCCCCCCCS
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHH---CCCCCCCCCCCCCCCCEE
T ss_conf 49998999358976899699589993529999999997---858189979586477666
No 127
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}
Probab=57.48 E-value=0.78 Score=19.59 Aligned_cols=33 Identities=24% Similarity=0.442 Sum_probs=26.5
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0414888986665768888899999987677678888
Q 000810 63 LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
.+.+..|...||..||.+.|..-. .||.|..+.
T Consensus 51 ~~~~~~C~H~FH~~Ci~~Wl~~~~----~CP~CR~~~ 83 (88)
T d3dplr1 51 TVAWGVCNHAFHFHCISRWLKTRQ----VCPLDNREW 83 (88)
T ss_dssp CEEEETTSCEEEHHHHHHHHTTCS----BCSSSCSBC
T ss_pred CEEECCCCCCCCHHHHHHHHHHCC----CCCCCCCCC
T ss_conf 728726547465799999998799----687889723
No 128
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=51.68 E-value=4 Score=14.51 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred CCCCCC-CCCCHHHHHHHHHHHHHH-C----CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 988889-999288999999999833-1----7985699908998099999999999840899967
Q 000810 278 PEFLSG-GSLHPYQLEGLNFLRFSW-S----KQTHVILADEMGLGKTIQSIAFLASLFGERISPH 336 (1272)
Q Consensus 278 P~~~~~-~~LrpyQlegv~wL~~~~-~----~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~ 336 (1272)
|.|++. ..=|+.|++.+.-++..+ . ...+.+|.-++|+|||..+-.++..+.....-.+
T Consensus 11 ~~y~p~~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~ 75 (276)
T d1fnna2 11 PSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF 75 (276)
T ss_dssp TTCCCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCE
T ss_conf 87778878877999999999999998578988881688898999899999999999754468857
No 129
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=50.27 E-value=4.2 Score=14.36 Aligned_cols=42 Identities=14% Similarity=0.144 Sum_probs=28.6
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Q ss_conf 9856999089980999999999998408999679996671289999
Q 000810 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWE 349 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~ 349 (1272)
..+.+|.-+.|.|||..+=+++..+ ..+++.+.+..+...|.
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~----~~~~~~i~~~~l~~~~~ 79 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANET----GAFFFLINGPEIMSKLA 79 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHT----TCEEEEECHHHHTTSCT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHH----CCEEEEEECHHHCCCCC
T ss_conf 8646876699888308999999874----88379997304302545
No 130
>d2f5ka1 b.34.13.3 (A:6-88) Mortality factor 4-like protein 1, MRG15 {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.17 E-value=0.74 Score=19.77 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=22.7
Q ss_pred HHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 77774325887666554675769887
Q 000810 131 KQYLVKWKGLSYLHCTWVPEKEFLKA 156 (1272)
Q Consensus 131 ~eYlVKWkg~Sy~h~~Wvpe~~L~~~ 156 (1272)
.+|||.|+|++-.+.+|||++.|...
T Consensus 35 ~~Y~VHy~GWn~~~DeWv~~~ril~~ 60 (83)
T d2f5ka1 35 VKYFIHYSGWNKNWDEWVPESRVLKY 60 (83)
T ss_dssp EEEEEEETTSCGGGCEEEEGGGEEES
T ss_pred EEEEEEECCCCCCCCCCCCHHHCCCC
T ss_conf 68999866648742540274332037
No 131
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=49.13 E-value=4.4 Score=14.24 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=34.3
Q ss_pred CHHHHHHH-HHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC-----CCEEEEEC-CCCH
Q ss_conf 28899999-999983317985699908998099999999999840899-----96799966-7128
Q 000810 287 HPYQLEGL-NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-----SPHLVVAP-LSTL 345 (1272)
Q Consensus 287 rpyQlegv-~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-----~p~LIVvP-~sll 345 (1272)
|+--+.-+ ..|. -....|.||.-+.|.|||..+-.++..+..... +..++... .+++
T Consensus 27 r~~ei~~~~~~L~--r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ 90 (387)
T d1qvra2 27 RDEEIRRVIQILL--RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL 90 (387)
T ss_dssp CHHHHHHHHHHHH--CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC----
T ss_pred CHHHHHHHHHHHH--CCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHH
T ss_conf 0899999999982--488999768799998899999999999980899978869668995576665
No 132
>d1dx8a_ g.41.5.1 (A:) Rubredoxin {Guillardia theta [TaxId: 55529]}
Probab=47.38 E-value=4.6 Score=14.06 Aligned_cols=41 Identities=34% Similarity=0.728 Sum_probs=23.1
Q ss_pred EECCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41488898666576888--------8899999987677678888654333
Q 000810 64 MSCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPLNDIDKI 105 (1272)
Q Consensus 64 l~Cd~C~~~~H~~Cl~p--------~l~~~p~~~W~C~~C~~~~~~iekI 105 (1272)
..|..|...|+..==+| +..++ ..+|.||.|..+.....++
T Consensus 8 y~C~~CgyiYDp~~GD~~~gI~pGT~F~dL-P~dW~CP~Cga~K~~F~~~ 56 (70)
T d1dx8a_ 8 YECEACGYIYEPEKGDKFAGIPPGTPFVDL-SDSFMCPACRSPKNQFKSI 56 (70)
T ss_dssp EEETTTCCEECTTTCCTTTTCCSSCCGGGS-CTTCBCTTTCCBGGGEEEC
T ss_pred EECCCCCEEECCCCCCCCCCCCCCCCHHHC-CCCCCCCCCCCCHHHHEEC
T ss_conf 782999908783447845687989996788-8987893999968980175
No 133
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=45.81 E-value=4.9 Score=13.89 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=27.1
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 798569990899809999999999984089996799966712
Q 000810 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl 344 (1272)
...+.+|.-++|.|||..|=+++..+. .++..+-....
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~----~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT----CCEEEEEGGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCC----CCHHCCCCCCC
T ss_conf 986699989999888899999862132----21000344330
No 134
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=43.09 E-value=5.3 Score=13.61 Aligned_cols=67 Identities=10% Similarity=0.150 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCC-----CCEEEEEC-CCCH------HHHHHHHHH
Q ss_conf 28899999999983317985699908998099999999999840899-----96799966-7128------999999998
Q 000810 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-----SPHLVVAP-LSTL------RNWEREFAT 354 (1272)
Q Consensus 287 rpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-----~p~LIVvP-~sll------~qW~~E~~~ 354 (1272)
|+-.++-+.-+... ....|.||.-+.|.|||..+-.++..+..... +..++... .+++ .+|+..+..
T Consensus 27 Rd~Ei~~l~~iL~r-~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~ 105 (195)
T d1jbka_ 27 RDEEIRRTIQVLQR-RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKG 105 (195)
T ss_dssp CHHHHHHHHHHHTS-SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC-CCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHCCCEEEEEEHHHHHCCCCCCHHHHHHHHH
T ss_conf 09999999999953-58887399835875447999999999980899978818569996699986458740779999999
No 135
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=41.10 E-value=4.6 Score=14.06 Aligned_cols=47 Identities=28% Similarity=0.693 Sum_probs=33.6
Q ss_pred CCCCCCCCCC-C----CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5222223778-9----604148889866657688888999999876776788
Q 000810 51 DDSCQACGES-E----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 51 ~~~C~~C~~~-~----~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1272)
...|..|+.. + .-..|-.|...++..|-.......+...|.|..|..
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C~~~~~~~~~~~~w~C~~C~k 99 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLE 99 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCC
T ss_conf 9858345973347899988672478601158877756899997989806752
No 136
>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}
Probab=39.10 E-value=6.1 Score=13.19 Aligned_cols=38 Identities=26% Similarity=0.660 Sum_probs=21.5
Q ss_pred EECCCCCCCCCCCCCC-----C---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 4148889866657688-----8---8899999987677678888654
Q 000810 64 MSCDTCTYAYHAKCLV-----P---PLKAPPSGSWRCPECVSPLNDI 102 (1272)
Q Consensus 64 l~Cd~C~~~~H~~Cl~-----p---~l~~~p~~~W~C~~C~~~~~~i 102 (1272)
..|..|...|...-=+ | +..++| .+|.||.|..+....
T Consensus 4 y~C~~CgyiYd~~~Gd~~~gi~pGT~F~~LP-~dw~CP~C~a~K~~F 49 (53)
T d1iroa_ 4 YTCTVCGYIYNPEDGDPDNGVNPGTDFKDIP-DDWVCPLCGVGKDQF 49 (53)
T ss_dssp EEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCBGGGE
T ss_pred EECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHC
T ss_conf 5909999288855488456879899978889-988993998948996
No 137
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}
Probab=38.58 E-value=2.6 Score=15.90 Aligned_cols=47 Identities=23% Similarity=0.521 Sum_probs=34.5
Q ss_pred CCCCCCCCCCC-CCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55222223778-9604148889866657688888999999876776788886
Q 000810 50 KDDSCQACGES-ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1272)
Q Consensus 50 ~~~~C~~C~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1272)
..+.|.+|... .+...+..|...||..|+...+... =.||.|+.+..
T Consensus 4 ~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~----~~CP~CR~~i~ 51 (68)
T d1chca_ 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN----PTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS----CSTTTTCCCCC
T ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHC----CCCCCCCCCHH
T ss_conf 7999944993966883882899917689999999829----90888781637
No 138
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=36.93 E-value=6.6 Score=12.96 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=31.2
Q ss_pred CCCCEEE-EECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHH
Q ss_conf 7985699-9089980999999999998408999679996671289999999
Q 000810 303 KQTHVIL-ADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREF 352 (1272)
Q Consensus 303 ~~~~~IL-aDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~ 352 (1272)
...|.+| .-+.|.|||+.+=++...+-.. -+++.|....++..|.-++
T Consensus 121 ~~~g~~l~~G~pG~GKT~la~ala~~~~~~--~~~~~~~~~~~~~~~~G~~ 169 (321)
T d1w44a_ 121 YASGMVIVTGKGNSGKTPLVHALGEALGGK--DKYATVRFGEPLSGYNTDF 169 (321)
T ss_dssp EESEEEEEECSSSSCHHHHHHHHHHHHHTT--SCCEEEEBSCSSTTCBCCH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEEHHHHHHCCCCHH
T ss_conf 688638887799850889999999986379--9808978268544244457
No 139
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=33.89 E-value=7.3 Score=12.63 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.8
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 856999089980999999999998
Q 000810 305 THVILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l 328 (1272)
.+.+|.-+.|+|||..+-+++..+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQEL 76 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 449998799998889999999998
No 140
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=33.55 E-value=3.3 Score=15.06 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=17.5
Q ss_pred CCCCCCCCCCCC---CCCHHCCCCC
Q ss_conf 789999985012---3211105989
Q 000810 949 DSMEPPPLMEGE---GRSFRVLGFS 970 (1272)
Q Consensus 949 ~~~~~~pL~e~e---~~~l~~~GF~ 970 (1272)
.++++.|||++| +++|+.+|||
T Consensus 78 ~Idna~pLTeEE~~eKe~Ll~eGFt 102 (102)
T d1ofcx3 78 KIDEAEPLTEEEIQEKENLLSQGFT 102 (102)
T ss_dssp HHHTCCCCCHHHHHHHHHHTTSSCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 2014799999999999999984699
No 141
>d2dsxa1 g.41.5.1 (A:1-52) Rubredoxin {Desulfovibrio gigas [TaxId: 879]}
Probab=33.51 E-value=7.4 Score=12.59 Aligned_cols=38 Identities=26% Similarity=0.749 Sum_probs=22.0
Q ss_pred EEECCCCCCCCCCCCCCC--------CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 041488898666576888--------889999998767767888865
Q 000810 63 LMSCDTCTYAYHAKCLVP--------PLKAPPSGSWRCPECVSPLND 101 (1272)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~p--------~l~~~p~~~W~C~~C~~~~~~ 101 (1272)
...|..|...|...==+| +...+| .+|.||.|..+...
T Consensus 3 ~y~C~~CgyiYdp~~Gd~~~gi~pGT~F~~LP-~~w~CP~C~a~K~~ 48 (52)
T d2dsxa1 3 IYVCTVCGYEYDPAKGDPDSGIKPGTKFEDLP-DDWACPVCGASKDA 48 (52)
T ss_dssp CEEETTTCCEECTTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCBGGG
T ss_pred EEEECCCCEEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHH
T ss_conf 07908999087755488355879999978889-97899299891899
No 142
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=33.40 E-value=7.5 Score=12.58 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=31.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 69990899809999999999984089996799966712899999999887
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~ 356 (1272)
.+|.-.+|.|||.++.=+.+++...+.+..||-+...-..- ...++.|+
T Consensus 15 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga-~eQL~~~a 63 (211)
T d1j8yf2 15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAA-LEQLQQLG 63 (211)
T ss_dssp EEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHH-HHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCH-HHHHHHHC
T ss_conf 99989999998999999999999779936999720235515-67898740
No 143
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.79 E-value=7.6 Score=12.51 Aligned_cols=39 Identities=21% Similarity=0.122 Sum_probs=30.9
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 856999089980999999999998408999679996671
Q 000810 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
++++|.-+.|.|||..+-.++..+...+.....+.|+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~ 40 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEV 40 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 699998899971999999999999977997999984550
No 144
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=31.33 E-value=8 Score=12.34 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 97086289982122269999999872798089995778989999999997126999428996245333454756788899
Q 000810 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1272)
Q Consensus 621 ~~~g~kVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~Id~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI 700 (1272)
...+.+|||.+......+.|.+.|...++++..+++-. .|. ... +.++......|.-++....+|
T Consensus 31 ~~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~~----------~~~--~~~---~~i~~~~l~~GF~~~~~~l~v 95 (117)
T d2eyqa2 31 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD----------EAS--DRG---RYLMIGAAEHGFVDTVRNLAL 95 (117)
T ss_dssp TTCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSGG----------GCC--TTC---CEEEECCCCSCEEETTTTEEE
T ss_pred HHCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEECCHH----------HHC--CCE---EEEEEECCCCCCCCCCCCEEE
T ss_conf 95898399997996579999999997699825706755----------606--760---799983474334567788899
Q ss_pred EECCC
Q ss_conf 96699
Q 000810 701 IYDSD 705 (1272)
Q Consensus 701 i~D~d 705 (1272)
+-+.+
T Consensus 96 ItE~d 100 (117)
T d2eyqa2 96 ICESD 100 (117)
T ss_dssp EEHHH
T ss_pred EECHH
T ss_conf 97637
No 145
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=30.34 E-value=8.3 Score=12.23 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=34.3
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHC
Q ss_conf 999288999999999833179856999089980999999999998408
Q 000810 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 284 ~~LrpyQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
--+.+.|++.+..+.. ...+-+|++-.||.|||.+..+++..+...
T Consensus 140 LG~~~~~~~~l~~l~~--~~~GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 140 LGMTAHNHDNFRRLIK--RPHGIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp SCCCHHHHHHHHHHHT--SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HCCCHHHHHHHHHHHH--HHHCEEEEECCCCCCCCHHHHHHHHHHCCC
T ss_conf 0135777899999986--410548987678777447799986662578
No 146
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=29.87 E-value=8.5 Score=12.18 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=32.5
Q ss_pred CCCE-EEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHC
Q ss_conf 9856-9990899809999999999984089996799966712899999999887
Q 000810 304 QTHV-ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1272)
Q Consensus 304 ~~~~-ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~ 356 (1272)
..++ +|.-.+|.|||.++.=+..++...+. ++++|+.-.--..=...++.|+
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~-kV~lit~Dt~R~gA~eQL~~~a 61 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR-RPLLVAADTQRPAAREQLRLLG 61 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC-CEEEEECCSSCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEECCCCCCHHHHHHHHHH
T ss_conf 9868999899999889999999999997799-2799954434640888899999
No 147
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=29.79 E-value=8.5 Score=12.17 Aligned_cols=126 Identities=13% Similarity=0.130 Sum_probs=65.4
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCHHHH
Q ss_conf 99999998331798569990899809999999999984089996799966712899999999887999099997572577
Q 000810 292 EGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQAR 371 (1272)
Q Consensus 292 egv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r 371 (1272)
+.+.+|......+.+.+++-.+|+|||...-+++.++-.. .+++++-...-+. ..+..+++.+.+.
T Consensus 154 ~~~~~l~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~--~rivtiEd~~El~--------l~~~~~~~~~~~~---- 219 (323)
T d1g6oa_ 154 QAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE--ERIISIEDTEEIV--------FKHHKNYTQLFFG---- 219 (323)
T ss_dssp HHHHHHHHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT--CCEEEEESSCCCC--------CSSCSSEEEEECB----
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCC--CCEEECCCHHHHH--------CCCCCCCCEECCC----
T ss_conf 9999999999837888999403566257899986530145--6233113226551--------1112454100146----
Q ss_pred HHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 89998520279990222101367532122222355539990188887311013787412587054433578111899999
Q 000810 372 NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL 451 (1272)
Q Consensus 372 ~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdViItSye~l~~d~~~L~~~~w~~vIiDEaHrlKn~~s~~~~~l 451 (1272)
.+ .|+..+.+ ..+ ...-+++|+.|.- +. ..+.++
T Consensus 220 -----------------------------------~~---~~~~~ll~--~~l-R~~pd~iivgEiR---~~--ea~~~l 253 (323)
T d1g6oa_ 220 -----------------------------------GN---ITSADCLK--SCL-RMRPDRIILGELR---SS--EAYDFY 253 (323)
T ss_dssp -----------------------------------TT---BCHHHHHH--HHT-TSCCSEEEESCCC---ST--HHHHHH
T ss_pred -----------------------------------CC---HHHHHHHH--HHH-CCCCCCCCCCCCC---CH--HHHHHH
T ss_conf -----------------------------------54---24999999--974-3499854578667---46--599999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 820025578970568999988999999
Q 000810 452 KQYSTRHRVLLTGTPLQNNLDELFMLM 478 (1272)
Q Consensus 452 ~~l~~~~rllLTGTPlqNn~~EL~~ll 478 (1272)
..+.+.|.-.+| |-..|+..+...-|
T Consensus 254 ~a~~tGh~g~~t-T~Ha~s~~~a~~Rl 279 (323)
T d1g6oa_ 254 NVLCSGHKGTLT-TLHAGSSEEAFIRL 279 (323)
T ss_dssp HHHHTTCSCEEE-EECCSSHHHHHHHH
T ss_pred HHHHHCCCCEEE-EECCCCHHHHHHHH
T ss_conf 999816985799-87879999999999
No 148
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.75 E-value=8.8 Score=12.05 Aligned_cols=37 Identities=14% Similarity=0.077 Sum_probs=27.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 69990899809999999999984089996799966712
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl 344 (1272)
-++.-.|..|||...|..+......+ ..++++-|..-
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~~~~g-~~v~~ikp~~D 41 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRFQIAQ-YKCLVIKYAKD 41 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTT-CCEEEEEETTC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCC
T ss_conf 99991416789999999999999869-90999932402
No 149
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.35 E-value=5.3 Score=13.64 Aligned_cols=47 Identities=23% Similarity=0.593 Sum_probs=31.5
Q ss_pred CCCCCCCCCC----CC-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5222223778----96-04148889866657688888999999876776788886
Q 000810 51 DDSCQACGES----EN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1272)
Q Consensus 51 ~~~C~~C~~~----~~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1272)
+..|.+|... .+ .+.-..|...||..|+...+... .-.||.|..+..
T Consensus 3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~~CP~CR~~i~ 54 (65)
T d1g25a_ 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG---AGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT---SSSCTTTCCCCS
T ss_pred CCCCCCCCCEEECCCCEEEEECCCCHHHHHHHHHHHHCCC---CCCCCCCCCCCC
T ss_conf 8998708826003995679847637276488999985708---197999986813
No 150
>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.55 E-value=7.4 Score=12.61 Aligned_cols=47 Identities=23% Similarity=0.507 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCC-EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 522222377896-0414888986665768888899999987677678888
Q 000810 51 DDSCQACGESEN-LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 51 ~~~C~~C~~~~~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
.-.|.+|...-. -+. -.|...|+..|+...+... .+...||.|..+.
T Consensus 21 ~l~CpIC~~~~~~pv~-~~CgH~fC~~Ci~~~~~~~-~~~~~CP~Cr~~~ 68 (103)
T d1jm7a_ 21 ILECPICLELIKEPVS-TKCDHIFCKFCMLKLLNQK-KGPSQCPLCKNDI 68 (103)
T ss_dssp HTSCSSSCCCCSSCCB-CTTSCCCCSHHHHHHHHSS-SSSCCCTTTSCCC
T ss_pred CCCCCCCCCHHCCEEE-CCCCCCHHHHHHHHHHHHC-CCCCCCCCCCCCC
T ss_conf 8499721823189188-3799864167899999977-9998096988838
No 151
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=26.53 E-value=9.6 Score=11.78 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.5
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 69990899809999999999984089996799966
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
.|-+-.+|.|||..++.++..|.+.+. +++++=|
T Consensus 5 ~i~gt~~GVGKTtvs~~La~aLa~~G~-rVl~id~ 38 (224)
T d1byia_ 5 FVTGTDTEVGKTVASCALLQAAKAAGY-RTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTTC-CEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-EEEEECC
T ss_conf 999899994299999999999997799-3999886
No 152
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.23 E-value=7.7 Score=12.49 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=29.3
Q ss_pred CCCCCCC---C-CEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 2223778---9-604148889866657688888999999876776788886
Q 000810 54 CQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1272)
Q Consensus 54 C~~C~~~---~-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 100 (1272)
|.+|... + ..+.-..|...||..|+...+.. ....||.|+.+..
T Consensus 3 CpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~---~~~~CP~CR~~~~ 50 (52)
T d1ur6b_ 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD---ENGLCPACRKPYP 50 (52)
T ss_dssp ETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTT---SCCBCTTTCCBCS
T ss_pred CCCCCHHHHCCCCEEEECCCCCCCCHHHHHHHHHH---CCCCCCCCCCCCC
T ss_conf 95878235189825986699770455899999966---4898986579488
No 153
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=22.29 E-value=11 Score=11.23 Aligned_cols=36 Identities=17% Similarity=0.075 Sum_probs=27.9
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 6999089980999999999998408999679996671
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
-++.-.|.+|||...+..+..+...+ .++|++-|..
T Consensus 10 ~lI~GpMfSGKTteLi~~~~~~~~~g-~~vl~i~~~~ 45 (141)
T d1xx6a1 10 EVIVGPMYSGKSEELIRRIRRAKIAK-QKIQVFKPEI 45 (141)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT-CCEEEEEEC-
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCC-CCEEEEEECC
T ss_conf 99990606689999999999854337-7299999642
No 154
>d1brfa_ g.41.5.1 (A:) Rubredoxin {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.06 E-value=12 Score=11.20 Aligned_cols=37 Identities=27% Similarity=0.780 Sum_probs=20.2
Q ss_pred ECCCCCCCCCCCCCC-----C---CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 148889866657688-----8---8899999987677678888654
Q 000810 65 SCDTCTYAYHAKCLV-----P---PLKAPPSGSWRCPECVSPLNDI 102 (1272)
Q Consensus 65 ~Cd~C~~~~H~~Cl~-----p---~l~~~p~~~W~C~~C~~~~~~i 102 (1272)
.|..|...|...==+ | +..++| .+|.||.|.......
T Consensus 4 ~C~~CgyiYd~~~Gd~~~gi~pGT~f~dLP-~dw~CP~C~a~K~~F 48 (53)
T d1brfa_ 4 VCKICGYIYDEDAGDPDNGISPGTKFEELP-DDWVCPICGAPKSEF 48 (53)
T ss_dssp EETTTCCEEETTTCBGGGTBCTTCCGGGSC-TTCBCTTTCCBGGGE
T ss_pred ECCCCCCEECCCCCCCCCCCCCCCCHHHCC-CCCCCCCCCCCHHHC
T ss_conf 879999188865578456879999978989-988892998948993
No 155
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=21.04 E-value=12 Score=11.06 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=26.6
Q ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCC
Q ss_conf 79856999089980999999999998408999679996671
Q 000810 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
...|.+|.-++|.|||+.|=.++..+ + -||.++=-++
T Consensus 48 ~ksNILliGPTGvGKTlLAr~LAk~l---~-VPFv~~daT~ 84 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTEIARRLAKLA---N-APFIKVEATK 84 (443)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT---T-CCEEEEEGGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHH---C-CCEEEEECCE
T ss_conf 65647998999988999999999873---8-9889862551
No 156
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=21.02 E-value=12 Score=11.06 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=31.1
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHH
Q ss_conf 985699908998099999999999840899967999667128999999
Q 000810 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E 351 (1272)
..+.+|.-..|.|||..+=++...+ ..+++.|-+..++..|..+
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~----~~~~~~i~~~~l~~~~~g~ 85 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEA----RVPFITASGSDFVEMFVGV 85 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEHHHHHHSCTTH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHC----CCCEEEEEHHHHHHCCCCH
T ss_conf 8648876689888359999999873----9977997869964624538
No 157
>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.88 E-value=12 Score=11.04 Aligned_cols=34 Identities=18% Similarity=0.458 Sum_probs=24.2
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 89604148889866657688888999999876776788
Q 000810 60 SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 60 ~~~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~ 97 (1272)
.+.+++|..|.......|-. ......|.|+.|..
T Consensus 10 ~~~i~RC~~C~ayiNP~~~~----~~~g~~w~C~~C~~ 43 (85)
T d1pd0a5 10 DGLIVRCRRCRSYMNPFVTF----IEQGRRWRCNFCRL 43 (85)
T ss_dssp SCCCCBCSSSCCBCCTTCEE----ETTTTEEECTTTCC
T ss_pred CCCCCCCCCCCCEECCCEEE----ECCCCEEECCCCCC
T ss_conf 99884066874897772389----17999998988885
No 158
>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}
Probab=20.82 E-value=12 Score=11.03 Aligned_cols=35 Identities=29% Similarity=0.746 Sum_probs=20.4
Q ss_pred EECCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41488898666576-8888899999987677678888
Q 000810 64 MSCDTCTYAYHAKC-LVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 64 l~Cd~C~~~~H~~C-l~p~l~~~p~~~W~C~~C~~~~ 99 (1272)
..|..|...|...= =.-+..++| .+|.||.|..+.
T Consensus 4 y~C~~CgyiYd~~~Gdgt~Fe~LP-~dw~CP~C~a~K 39 (45)
T d6rxna_ 4 YVCNVCGYEYDPAEHDNVPFDQLP-DDWCCPVCGVSK 39 (45)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSC-TTCBCTTTCCBG
T ss_pred EEECCCCEEECCCCCCCCCHHHCC-CCCCCCCCCCCH
T ss_conf 590899808786447998977889-877895998928
No 159
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=20.02 E-value=13 Score=10.91 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=27.3
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 69990899809999999999984089996799966712
Q 000810 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl 344 (1272)
-++.-.|..|||...+-.+..+...+ .+++++-|..-
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~-~kv~~ikp~~D 41 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYAD-VKYLVFKPKID 41 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTT-CCEEEEEECCC
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHCC-CCEEEEEECCC
T ss_conf 99991506789999999999998779-95899977313
Done!