Query 000811
Match_columns 1272
No_of_seqs 701 out of 4061
Neff 7.3
Searched_HMMs 46136
Date Mon Apr 1 23:55:22 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000811.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000811hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0384 Chromodomain-helicase 100.0 6E-173 1E-177 1560.6 61.3 926 101-1120 184-1172(1373)
2 KOG0385 Chromatin remodeling c 100.0 1E-149 2E-154 1302.4 55.7 767 276-1133 158-958 (971)
3 PLN03142 Probable chromatin-re 100.0 4E-128 8E-133 1220.7 56.3 765 272-1133 157-986 (1033)
4 KOG0386 Chromatin remodeling c 100.0 5.6E-97 1E-101 883.2 32.7 506 272-810 381-906 (1157)
5 KOG0389 SNF2 family DNA-depend 100.0 4.7E-94 1E-98 840.9 41.8 464 274-761 387-913 (941)
6 KOG0391 SNF2 family DNA-depend 100.0 3.8E-93 8.3E-98 845.6 35.6 472 280-775 610-1428(1958)
7 KOG0388 SNF2 family DNA-depend 100.0 1E-91 2.2E-96 804.4 33.0 458 273-759 556-1177(1185)
8 KOG0383 Predicted helicase [Ge 100.0 9.6E-93 2.1E-97 852.8 19.8 625 46-690 42-696 (696)
9 KOG0387 Transcription-coupled 100.0 1.9E-89 4E-94 803.8 40.0 490 271-780 192-703 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 5.8E-83 1.3E-87 770.5 39.5 465 284-775 974-1495(1549)
11 KOG0390 DNA repair protein, SN 100.0 6.3E-71 1.4E-75 668.9 42.0 453 284-760 237-731 (776)
12 KOG1015 Transcription regulato 100.0 9.7E-68 2.1E-72 620.7 34.1 471 284-779 667-1321(1567)
13 KOG1002 Nucleotide excision re 100.0 4.4E-65 9.6E-70 567.8 36.5 468 273-774 173-789 (791)
14 KOG4439 RNA polymerase II tran 100.0 1E-64 2.2E-69 586.7 33.6 473 272-773 313-898 (901)
15 COG0553 HepA Superfamily II DN 100.0 8.7E-64 1.9E-68 656.8 40.4 472 282-775 335-864 (866)
16 KOG1016 Predicted DNA helicase 100.0 1.5E-57 3.3E-62 525.7 25.4 484 284-778 253-892 (1387)
17 KOG1000 Chromatin remodeling p 100.0 3.7E-55 7.9E-60 490.4 32.3 408 285-756 198-623 (689)
18 PRK04914 ATP-dependent helicas 100.0 1.9E-52 4.1E-57 530.2 35.5 417 284-760 151-629 (956)
19 KOG1001 Helicase-like transcri 100.0 1.4E-47 3.1E-52 469.9 24.3 437 288-758 135-672 (674)
20 PF00176 SNF2_N: SNF2 family N 100.0 9.5E-41 2.1E-45 383.8 22.2 272 289-586 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 4.8E-37 1E-41 378.0 36.5 341 283-746 253-617 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 6.8E-33 1.5E-37 358.6 41.2 431 284-753 14-496 (773)
23 KOG0298 DEAD box-containing he 100.0 3.8E-30 8.1E-35 317.0 23.5 256 302-584 372-689 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.9E-28 4.1E-33 280.5 33.9 419 284-753 14-498 (542)
25 COG1061 SSL2 DNA or RNA helica 100.0 2.8E-28 6.1E-33 293.6 31.8 362 283-748 34-406 (442)
26 PHA02558 uvsW UvsW helicase; P 100.0 1.6E-27 3.5E-32 292.4 33.0 337 283-737 112-456 (501)
27 PF06461 DUF1086: Domain of Un 100.0 1.8E-28 4E-33 238.2 13.2 132 937-1069 10-142 (145)
28 PTZ00110 helicase; Provisional 99.9 5.6E-23 1.2E-27 254.3 32.0 318 285-736 152-484 (545)
29 TIGR00614 recQ_fam ATP-depende 99.9 1.1E-22 2.5E-27 248.3 29.5 308 284-730 10-329 (470)
30 PRK01297 ATP-dependent RNA hel 99.9 2.8E-22 6.2E-27 245.6 31.0 315 285-736 109-442 (475)
31 PRK10590 ATP-dependent RNA hel 99.9 2.3E-22 5E-27 244.9 29.6 309 285-729 23-347 (456)
32 PRK11776 ATP-dependent RNA hel 99.9 2.2E-22 4.8E-27 245.8 29.5 313 285-736 26-349 (460)
33 PLN00206 DEAD-box ATP-dependen 99.9 2.8E-22 6E-27 247.3 30.1 315 284-736 142-475 (518)
34 KOG0354 DEAD-box like helicase 99.9 2.4E-21 5.2E-26 234.8 37.1 405 284-734 61-527 (746)
35 PRK11192 ATP-dependent RNA hel 99.9 8.9E-22 1.9E-26 238.8 31.1 312 284-729 22-347 (434)
36 PRK04837 ATP-dependent RNA hel 99.9 3.5E-22 7.6E-27 241.4 27.1 313 285-735 30-361 (423)
37 PRK04537 ATP-dependent RNA hel 99.9 1.7E-21 3.6E-26 242.0 30.5 308 285-729 31-359 (572)
38 PRK11634 ATP-dependent RNA hel 99.9 3.6E-21 7.7E-26 240.4 33.4 310 284-729 27-347 (629)
39 TIGR01389 recQ ATP-dependent D 99.9 3.5E-21 7.7E-26 241.9 30.3 304 284-728 12-325 (591)
40 KOG0331 ATP-dependent RNA heli 99.9 3.9E-21 8.4E-26 226.9 28.6 313 285-729 113-443 (519)
41 PRK11057 ATP-dependent DNA hel 99.9 4.7E-21 1E-25 240.3 30.7 304 284-728 24-337 (607)
42 KOG1123 RNA polymerase II tran 99.9 5.8E-22 1.3E-26 223.9 18.9 342 282-742 299-659 (776)
43 PTZ00424 helicase 45; Provisio 99.9 6.8E-21 1.5E-25 228.9 29.0 317 284-737 49-375 (401)
44 PLN03137 ATP-dependent DNA hel 99.9 1.5E-20 3.2E-25 237.4 28.7 311 284-731 459-784 (1195)
45 KOG0330 ATP-dependent RNA heli 99.9 1.7E-20 3.7E-25 207.9 23.4 317 285-739 83-410 (476)
46 PRK13767 ATP-dependent helicas 99.9 9.7E-20 2.1E-24 236.2 33.2 322 284-731 31-395 (876)
47 PRK11448 hsdR type I restricti 99.9 5.5E-20 1.2E-24 240.0 30.3 357 283-733 411-815 (1123)
48 TIGR00643 recG ATP-dependent D 99.9 1.9E-19 4.1E-24 226.8 32.3 305 284-728 234-560 (630)
49 TIGR00580 mfd transcription-re 99.9 3.2E-19 7E-24 229.1 34.4 308 284-735 450-769 (926)
50 TIGR03817 DECH_helic helicase/ 99.9 1.5E-19 3.4E-24 230.0 31.2 330 285-744 36-394 (742)
51 PRK10917 ATP-dependent DNA hel 99.8 2.9E-19 6.3E-24 226.5 32.5 305 284-728 260-583 (681)
52 PRK10689 transcription-repair 99.8 2.6E-19 5.5E-24 234.6 28.7 303 284-728 599-913 (1147)
53 COG0513 SrmB Superfamily II DN 99.8 1.1E-18 2.4E-23 214.2 29.6 328 284-749 50-392 (513)
54 PRK02362 ski2-like helicase; P 99.8 1.6E-17 3.5E-22 213.6 30.5 317 284-735 22-396 (737)
55 TIGR01587 cas3_core CRISPR-ass 99.8 2.2E-17 4.8E-22 195.5 27.8 328 307-750 2-355 (358)
56 COG1201 Lhr Lhr-like helicases 99.8 1.9E-17 4E-22 206.1 28.0 327 284-747 21-371 (814)
57 PRK00254 ski2-like helicase; P 99.8 5.8E-17 1.3E-21 207.9 32.5 317 284-737 22-389 (720)
58 PRK01172 ski2-like helicase; P 99.8 4.3E-17 9.3E-22 208.1 29.8 304 284-728 21-370 (674)
59 TIGR03714 secA2 accessory Sec 99.8 6.5E-17 1.4E-21 200.5 27.2 117 606-728 406-531 (762)
60 TIGR00348 hsdR type I site-spe 99.8 1E-16 2.2E-21 202.6 29.2 361 284-734 237-649 (667)
61 KOG0350 DEAD-box ATP-dependent 99.8 2.7E-17 5.8E-22 187.5 20.0 356 285-735 159-539 (620)
62 KOG0328 Predicted ATP-dependen 99.8 3.6E-17 7.8E-22 174.5 19.4 313 287-737 51-374 (400)
63 TIGR02621 cas3_GSU0051 CRISPR- 99.8 6.1E-17 1.3E-21 202.6 24.7 107 621-732 269-390 (844)
64 KOG0345 ATP-dependent RNA heli 99.7 4.4E-16 9.6E-21 176.8 25.9 316 284-732 27-362 (567)
65 PRK09200 preprotein translocas 99.7 7.1E-16 1.5E-20 193.1 30.1 131 605-745 409-547 (790)
66 COG0514 RecQ Superfamily II DN 99.7 4.7E-16 1E-20 187.4 25.3 306 284-730 16-333 (590)
67 PRK12898 secA preprotein trans 99.7 5E-16 1.1E-20 190.7 25.5 131 605-745 454-592 (656)
68 TIGR00963 secA preprotein tran 99.7 4.4E-17 9.6E-22 200.7 15.1 119 606-729 387-512 (745)
69 PHA02653 RNA helicase NPH-II; 99.7 2E-15 4.3E-20 188.3 27.7 322 284-738 159-516 (675)
70 PRK09751 putative ATP-dependen 99.7 1.6E-15 3.4E-20 200.1 27.9 96 623-721 243-371 (1490)
71 KOG0335 ATP-dependent RNA heli 99.7 1.1E-15 2.3E-20 178.2 21.8 310 284-732 95-442 (482)
72 COG4096 HsdR Type I site-speci 99.7 1.1E-15 2.3E-20 185.3 21.7 353 283-733 163-545 (875)
73 KOG0333 U5 snRNP-like RNA heli 99.7 1.6E-15 3.5E-20 173.8 21.5 339 285-736 267-624 (673)
74 KOG0342 ATP-dependent RNA heli 99.7 8.7E-16 1.9E-20 175.8 19.2 308 285-727 104-430 (543)
75 COG1200 RecG RecG-like helicas 99.7 6.1E-15 1.3E-19 177.1 27.2 305 284-727 261-584 (677)
76 TIGR03158 cas3_cyano CRISPR-as 99.7 1.2E-14 2.7E-19 171.4 27.4 85 623-719 271-357 (357)
77 KOG0348 ATP-dependent RNA heli 99.7 7.8E-15 1.7E-19 168.5 24.4 117 610-729 409-549 (708)
78 KOG0341 DEAD-box protein abstr 99.7 5.8E-16 1.2E-20 171.0 14.3 319 285-742 192-534 (610)
79 KOG0343 RNA Helicase [RNA proc 99.7 1.4E-14 3.1E-19 166.7 24.7 325 285-750 91-435 (758)
80 PRK09401 reverse gyrase; Revie 99.6 2E-14 4.4E-19 189.3 29.3 293 283-721 78-431 (1176)
81 KOG0338 ATP-dependent RNA heli 99.6 1.5E-14 3.2E-19 165.3 23.7 322 285-745 203-540 (691)
82 KOG0340 ATP-dependent RNA heli 99.6 2.2E-14 4.7E-19 158.2 23.5 317 285-738 29-363 (442)
83 COG4889 Predicted helicase [Ge 99.6 7.3E-15 1.6E-19 175.3 20.7 398 283-733 159-585 (1518)
84 PRK05580 primosome assembly pr 99.6 9.2E-14 2E-18 176.1 31.6 153 284-466 143-304 (679)
85 COG1205 Distinct helicase fami 99.6 2E-14 4.3E-19 184.1 25.7 329 285-744 70-430 (851)
86 cd00079 HELICc Helicase superf 99.6 1.9E-15 4E-20 151.5 11.3 120 608-730 12-131 (131)
87 KOG4284 DEAD box protein [Tran 99.6 1.1E-14 2.4E-19 169.7 18.9 310 286-725 48-370 (980)
88 KOG0339 ATP-dependent RNA heli 99.6 4.5E-14 9.7E-19 161.1 22.7 319 285-739 245-578 (731)
89 PF04851 ResIII: Type III rest 99.6 4.8E-15 1E-19 157.5 13.5 165 284-467 2-183 (184)
90 PRK13104 secA preprotein trans 99.6 1.5E-13 3.2E-18 172.0 27.2 120 606-730 426-583 (896)
91 TIGR00595 priA primosomal prot 99.6 1.4E-13 3.1E-18 168.5 26.6 92 637-731 271-378 (505)
92 KOG0336 ATP-dependent RNA heli 99.6 1.5E-13 3.2E-18 153.2 21.5 316 285-736 242-572 (629)
93 PRK12904 preprotein translocas 99.6 4.5E-13 9.8E-18 167.7 26.4 120 606-730 412-569 (830)
94 COG1204 Superfamily II helicas 99.6 3.2E-13 6.8E-18 170.9 25.1 311 285-726 31-398 (766)
95 TIGR01054 rgy reverse gyrase. 99.5 4.6E-13 1E-17 176.9 27.0 131 284-442 77-213 (1171)
96 PRK09694 helicase Cas3; Provis 99.5 7.6E-13 1.7E-17 169.1 27.8 357 283-724 284-665 (878)
97 PRK12906 secA preprotein trans 99.5 3.1E-13 6.7E-18 168.5 23.4 118 606-728 422-547 (796)
98 COG4098 comFA Superfamily II D 99.5 5.9E-12 1.3E-16 138.8 30.5 314 280-734 92-414 (441)
99 KOG0326 ATP-dependent RNA heli 99.5 1.8E-14 3.9E-19 156.3 10.6 302 286-725 108-420 (459)
100 PF09111 SLIDE: SLIDE; InterP 99.5 1.8E-16 3.8E-21 154.1 -5.0 100 1024-1132 1-111 (118)
101 TIGR01970 DEAH_box_HrpB ATP-de 99.5 1E-12 2.2E-17 168.0 27.1 109 623-737 208-337 (819)
102 PRK14701 reverse gyrase; Provi 99.5 8.8E-13 1.9E-17 177.5 27.7 336 284-724 78-446 (1638)
103 KOG0332 ATP-dependent RNA heli 99.5 2E-13 4.4E-18 151.4 17.3 324 268-725 89-434 (477)
104 PRK13107 preprotein translocas 99.5 1.6E-12 3.5E-17 162.3 25.3 120 606-730 431-587 (908)
105 KOG0347 RNA helicase [RNA proc 99.5 5.3E-13 1.1E-17 154.1 18.5 340 305-756 220-611 (731)
106 COG1197 Mfd Transcription-repa 99.5 6E-12 1.3E-16 159.3 29.3 323 284-753 593-927 (1139)
107 COG1202 Superfamily II helicas 99.5 1.4E-12 3E-17 151.3 21.0 315 284-736 215-553 (830)
108 PRK11664 ATP-dependent RNA hel 99.5 3.7E-12 7.9E-17 163.3 24.5 110 623-738 211-341 (812)
109 PF00271 Helicase_C: Helicase 99.5 9.6E-14 2.1E-18 126.9 7.3 78 642-722 1-78 (78)
110 PF08074 CHDCT2: CHDCT2 (NUC03 99.4 6.8E-14 1.5E-18 138.4 5.2 79 1081-1222 3-81 (173)
111 smart00487 DEXDc DEAD-like hel 99.4 1.8E-12 4E-17 138.4 16.0 156 283-468 6-172 (201)
112 KOG0334 RNA helicase [RNA proc 99.4 4.1E-12 8.8E-17 158.0 20.0 123 607-735 597-719 (997)
113 KOG0346 RNA helicase [RNA proc 99.4 2.8E-12 6E-17 145.0 16.6 120 607-730 252-406 (569)
114 KOG0344 ATP-dependent RNA heli 99.4 3.2E-12 7E-17 150.2 17.7 122 607-735 372-494 (593)
115 PRK12900 secA preprotein trans 99.4 1.8E-11 3.9E-16 153.5 24.9 118 606-728 580-705 (1025)
116 KOG0351 ATP-dependent DNA heli 99.4 3.6E-12 7.9E-17 162.4 19.1 315 284-734 263-592 (941)
117 TIGR00631 uvrb excinuclease AB 99.4 9.9E-11 2.1E-15 147.0 31.2 125 607-737 425-554 (655)
118 cd00046 DEXDc DEAD-like helica 99.4 3.6E-12 7.9E-17 128.0 13.4 136 305-466 1-144 (144)
119 KOG0952 DNA/RNA helicase MER3/ 99.4 4.3E-11 9.3E-16 147.6 22.3 307 299-737 121-492 (1230)
120 PRK05298 excinuclease ABC subu 99.3 7.9E-10 1.7E-14 139.9 33.3 124 607-736 429-557 (652)
121 PRK12899 secA preprotein trans 99.3 4E-10 8.7E-15 141.3 28.5 120 606-730 550-677 (970)
122 smart00490 HELICc helicase sup 99.3 4.5E-12 9.7E-17 115.9 8.5 81 639-722 2-82 (82)
123 PF11496 HDA2-3: Class II hist 99.3 2.4E-11 5.2E-16 138.2 16.2 216 532-749 4-258 (297)
124 PRK12326 preprotein translocas 99.3 2.8E-10 6E-15 139.5 25.0 120 606-730 409-543 (764)
125 TIGR01967 DEAH_box_HrpA ATP-de 99.3 1.8E-10 3.8E-15 151.1 24.4 110 623-740 278-408 (1283)
126 PRK11131 ATP-dependent RNA hel 99.3 2.6E-10 5.7E-15 148.9 25.3 109 623-739 285-414 (1294)
127 COG1203 CRISPR-associated heli 99.3 2.1E-10 4.6E-15 147.1 24.0 355 284-752 194-568 (733)
128 KOG0327 Translation initiation 99.2 1.2E-10 2.6E-15 131.1 16.4 309 288-736 51-370 (397)
129 KOG0337 ATP-dependent RNA heli 99.2 5E-11 1.1E-15 134.5 12.8 313 285-736 43-368 (529)
130 PRK13103 secA preprotein trans 99.2 9.5E-10 2.1E-14 137.9 23.6 121 605-730 430-587 (913)
131 PF00270 DEAD: DEAD/DEAH box h 99.2 2.1E-10 4.6E-15 120.5 13.6 155 288-472 2-167 (169)
132 cd00268 DEADc DEAD-box helicas 99.2 3.4E-10 7.3E-15 123.0 15.7 153 285-467 21-185 (203)
133 KOG0353 ATP-dependent DNA heli 99.2 1.5E-09 3.3E-14 120.2 19.3 298 284-715 93-405 (695)
134 KOG0352 ATP-dependent DNA heli 99.1 3E-09 6.6E-14 120.0 21.1 320 288-731 23-359 (641)
135 PRK12903 secA preprotein trans 99.1 9.2E-09 2E-13 127.9 26.3 120 606-730 408-535 (925)
136 TIGR01407 dinG_rel DnaQ family 99.1 1.8E-09 3.9E-14 141.3 20.0 86 282-368 242-333 (850)
137 COG0556 UvrB Helicase subunit 99.1 9.5E-08 2.1E-12 111.6 30.6 132 613-748 432-571 (663)
138 KOG0951 RNA helicase BRR2, DEA 99.1 4.5E-09 9.7E-14 131.5 20.5 73 648-724 607-690 (1674)
139 PF13872 AAA_34: P-loop contai 98.9 1.6E-08 3.4E-13 113.3 12.9 237 276-550 27-302 (303)
140 CHL00122 secA preprotein trans 98.8 1.9E-07 4E-12 117.3 22.2 84 606-693 406-490 (870)
141 KOG0947 Cytoplasmic exosomal R 98.8 3.9E-08 8.6E-13 120.6 15.4 168 271-500 283-458 (1248)
142 COG1110 Reverse gyrase [DNA re 98.8 7.4E-07 1.6E-11 111.1 24.9 127 284-440 81-215 (1187)
143 TIGR00596 rad1 DNA repair prot 98.8 1.7E-07 3.7E-12 119.6 19.9 42 605-646 267-317 (814)
144 COG1198 PriA Primosomal protei 98.8 8.5E-07 1.8E-11 111.2 25.1 377 284-735 197-604 (730)
145 PRK12902 secA preprotein trans 98.8 6.8E-07 1.5E-11 112.1 23.3 85 606-694 421-506 (939)
146 COG0610 Type I site-specific r 98.7 2E-07 4.3E-12 122.3 18.7 139 303-470 272-417 (962)
147 PRK12901 secA preprotein trans 98.7 9.7E-07 2.1E-11 111.7 23.8 120 606-730 610-737 (1112)
148 PF00385 Chromo: Chromo (CHRro 98.7 7.9E-09 1.7E-13 87.9 2.0 49 193-241 2-54 (55)
149 KOG1244 Predicted transcriptio 98.7 5.4E-09 1.2E-13 111.3 0.5 53 48-100 278-333 (336)
150 COG4581 Superfamily II RNA hel 98.6 8.7E-07 1.9E-11 113.4 19.9 157 282-498 116-282 (1041)
151 PRK07246 bifunctional ATP-depe 98.6 1.5E-06 3.3E-11 112.7 22.6 89 612-706 635-725 (820)
152 TIGR00604 rad3 DNA repair heli 98.6 2.2E-06 4.7E-11 110.5 23.0 74 281-354 6-82 (705)
153 PF06465 DUF1087: Domain of Un 98.6 5.9E-08 1.3E-12 83.3 5.2 43 862-904 20-62 (66)
154 PRK08074 bifunctional ATP-depe 98.6 1.4E-05 3.1E-10 105.6 29.3 90 280-369 252-347 (928)
155 KOG4299 PHD Zn-finger protein 98.5 2.7E-08 5.8E-13 118.4 1.4 49 51-99 253-306 (613)
156 COG1199 DinG Rad3-related DNA 98.5 9.8E-06 2.1E-10 104.1 24.1 104 620-728 475-611 (654)
157 KOG1513 Nuclear helicase MOP-3 98.5 1.1E-05 2.5E-10 97.4 22.0 253 266-554 246-540 (1300)
158 KOG0948 Nuclear exosomal RNA h 98.4 9.1E-07 2E-11 106.5 11.4 152 284-498 128-288 (1041)
159 KOG0329 ATP-dependent RNA heli 98.4 5.2E-06 1.1E-10 88.8 15.7 45 681-725 302-346 (387)
160 TIGR03117 cas_csf4 CRISPR-asso 98.4 4.3E-05 9.3E-10 95.5 25.8 79 290-368 2-87 (636)
161 PRK15483 type III restriction- 98.3 5.4E-06 1.2E-10 106.1 15.8 143 305-467 60-239 (986)
162 KOG0949 Predicted helicase, DE 98.3 0.00014 3.1E-09 90.5 26.6 161 286-479 512-682 (1330)
163 PRK11747 dinG ATP-dependent DN 98.3 8.4E-05 1.8E-09 95.4 24.7 92 611-706 521-616 (697)
164 PF02399 Herpes_ori_bp: Origin 98.3 5E-05 1.1E-09 94.9 21.6 114 607-731 266-385 (824)
165 cd00024 CHROMO Chromatin organ 98.2 5.3E-07 1.1E-11 76.5 2.6 49 193-241 4-54 (55)
166 KOG0922 DEAH-box RNA helicase 98.2 0.00014 3E-09 88.3 21.8 108 626-738 260-392 (674)
167 KOG0825 PHD Zn-finger protein 98.2 6.5E-07 1.4E-11 107.2 2.2 47 51-97 215-265 (1134)
168 PF07652 Flavi_DEAD: Flaviviru 98.1 1.5E-05 3.3E-10 80.2 10.3 130 302-466 2-136 (148)
169 COG0653 SecA Preprotein transl 98.1 0.00045 9.8E-09 87.2 25.1 121 606-732 411-542 (822)
170 KOG0920 ATP-dependent RNA heli 98.1 0.00028 6E-09 90.2 23.3 129 608-742 395-550 (924)
171 smart00489 DEXDc3 DEAD-like he 98.1 2.5E-05 5.4E-10 89.8 12.3 72 284-355 7-84 (289)
172 smart00488 DEXDc2 DEAD-like he 98.1 2.5E-05 5.4E-10 89.8 12.3 72 284-355 7-84 (289)
173 KOG0924 mRNA splicing factor A 98.0 0.00014 2.9E-09 87.5 17.9 94 648-744 597-705 (1042)
174 smart00298 CHROMO Chromatin or 98.0 2.4E-06 5.3E-11 72.3 2.4 48 194-241 4-52 (55)
175 KOG0950 DNA polymerase theta/e 98.0 0.00014 3E-09 91.1 18.3 153 285-470 223-391 (1008)
176 PF00628 PHD: PHD-finger; Int 98.0 1.6E-06 3.5E-11 72.4 0.7 44 53-96 1-49 (51)
177 KOG0349 Putative DEAD-box RNA 97.9 2.1E-05 4.5E-10 89.6 8.4 96 624-722 505-603 (725)
178 PF13871 Helicase_C_4: Helicas 97.9 1.8E-05 4E-10 88.8 8.0 90 665-757 52-149 (278)
179 COG1643 HrpA HrpA-like helicas 97.9 0.00047 1E-08 88.4 21.4 112 625-739 260-390 (845)
180 TIGR02562 cas3_yersinia CRISPR 97.8 0.012 2.7E-07 76.1 30.9 189 287-475 410-643 (1110)
181 smart00249 PHD PHD zinc finger 97.8 1.7E-05 3.7E-10 64.4 3.2 43 53-95 1-47 (47)
182 PF00385 Chromo: Chromo (CHRro 97.7 4.2E-06 9E-11 71.1 -1.9 54 101-173 2-55 (55)
183 cd00024 CHROMO Chromatin organ 97.6 1.9E-05 4E-10 67.0 1.3 51 101-172 4-54 (55)
184 cd04718 BAH_plant_2 BAH, or Br 97.6 3E-05 6.6E-10 78.0 2.9 29 72-100 1-29 (148)
185 PF13086 AAA_11: AAA domain; P 97.6 0.00043 9.3E-09 76.3 12.2 66 285-354 1-75 (236)
186 KOG0953 Mitochondrial RNA heli 97.6 0.00015 3.3E-09 85.7 8.7 99 622-724 356-464 (700)
187 KOG0957 PHD finger protein [Ge 97.4 5.3E-05 1.1E-09 87.3 1.4 48 49-96 542-596 (707)
188 KOG1512 PHD Zn-finger protein 97.4 7.2E-05 1.6E-09 80.8 2.2 51 44-96 307-361 (381)
189 KOG0923 mRNA splicing factor A 97.4 0.0058 1.3E-07 74.0 18.0 84 649-740 507-610 (902)
190 PF07517 SecA_DEAD: SecA DEAD- 97.4 0.0022 4.9E-08 72.3 14.0 122 283-440 75-209 (266)
191 COG5034 TNG2 Chromatin remodel 97.4 8.9E-05 1.9E-09 79.7 2.7 47 48-97 218-269 (271)
192 KOG1973 Chromatin remodeling p 97.3 8E-05 1.7E-09 84.6 2.0 44 52-97 220-267 (274)
193 KOG0925 mRNA splicing factor A 97.2 0.0073 1.6E-07 70.8 15.6 62 679-742 315-393 (699)
194 KOG2748 Uncharacterized conser 97.2 7.1E-05 1.5E-09 83.6 -0.9 24 132-155 27-50 (369)
195 KOG0955 PHD finger protein BR1 97.2 0.00028 6E-09 91.2 4.0 64 49-117 217-285 (1051)
196 KOG0954 PHD finger protein [Ge 97.0 0.00024 5.3E-09 85.8 1.9 93 49-161 269-367 (893)
197 COG5141 PHD zinc finger-contai 96.9 0.00037 8E-09 80.5 2.2 70 43-117 185-259 (669)
198 PRK10536 hypothetical protein; 96.9 0.0048 1E-07 68.9 10.1 150 286-470 60-216 (262)
199 KOG1473 Nucleosome remodeling 96.9 0.00045 9.8E-09 86.9 2.1 47 51-97 344-390 (1414)
200 smart00298 CHROMO Chromatin or 96.9 0.00054 1.2E-08 57.9 1.9 36 131-173 18-53 (55)
201 KOG4443 Putative transcription 96.8 0.00066 1.4E-08 81.9 2.3 48 49-96 66-116 (694)
202 COG3587 Restriction endonuclea 96.7 0.0051 1.1E-07 76.7 9.8 45 678-722 484-528 (985)
203 KOG0926 DEAH-box RNA helicase 96.7 0.0038 8.2E-08 76.9 8.2 66 667-735 620-703 (1172)
204 KOG1245 Chromatin remodeling c 96.7 0.00036 7.8E-09 93.8 -0.4 52 48-99 1105-1159(1404)
205 KOG4150 Predicted ATP-dependen 96.7 0.0087 1.9E-07 71.0 10.4 134 605-743 506-647 (1034)
206 PF02562 PhoH: PhoH-like prote 96.5 0.014 3.1E-07 63.4 10.5 149 286-471 5-160 (205)
207 KOG0956 PHD finger protein AF1 96.5 0.00079 1.7E-08 80.8 1.0 84 53-154 7-98 (900)
208 KOG1911 Heterochromatin-associ 96.4 0.0032 6.9E-08 71.8 4.7 58 189-246 46-103 (270)
209 PF13401 AAA_22: AAA domain; P 96.3 0.0047 1E-07 61.8 4.8 35 430-466 89-125 (131)
210 KOG4323 Polycomb-like PHD Zn-f 96.1 0.0017 3.7E-08 76.9 0.5 53 52-104 169-230 (464)
211 PRK14873 primosome assembly pr 96.1 0.026 5.6E-07 71.9 11.0 125 313-466 169-303 (665)
212 PF13307 Helicase_C_2: Helicas 96.1 0.011 2.3E-07 62.5 6.5 81 621-706 6-92 (167)
213 KOG1802 RNA helicase nonsense 96.1 0.0094 2E-07 72.3 6.4 77 284-366 409-486 (935)
214 KOG1131 RNA polymerase II tran 96.0 0.013 2.9E-07 69.2 7.2 66 277-342 8-75 (755)
215 PF13604 AAA_30: AAA domain; P 95.8 0.092 2E-06 57.0 12.4 58 285-345 1-58 (196)
216 PF09848 DUF2075: Uncharacteri 95.8 0.033 7.1E-07 66.2 9.7 45 307-351 4-49 (352)
217 KOG2748 Uncharacterized conser 95.8 0.0072 1.6E-07 68.1 3.4 50 192-242 11-60 (369)
218 COG0553 HepA Superfamily II DN 95.6 0.0062 1.4E-07 81.0 2.5 179 285-488 84-289 (866)
219 TIGR00376 DNA helicase, putati 95.1 0.099 2.1E-06 66.8 10.8 75 284-364 156-231 (637)
220 KOG1803 DNA helicase [Replicat 94.8 0.047 1E-06 66.4 6.4 64 284-351 184-248 (649)
221 TIGR01448 recD_rel helicase, p 94.6 0.22 4.8E-06 64.6 12.5 65 283-351 321-386 (720)
222 cd00009 AAA The AAA+ (ATPases 94.6 0.29 6.3E-06 48.9 10.9 41 304-345 19-59 (151)
223 KOG0951 RNA helicase BRR2, DEA 94.5 0.098 2.1E-06 68.0 8.5 110 301-445 1156-1270(1674)
224 KOG1132 Helicase of the DEAD s 94.1 0.32 6.9E-06 61.7 11.6 81 284-364 20-142 (945)
225 PF13831 PHD_2: PHD-finger; PD 94.0 0.0086 1.9E-07 46.1 -1.3 34 61-96 2-36 (36)
226 PLN03025 replication factor C 94.0 0.54 1.2E-05 55.1 13.0 40 292-331 20-61 (319)
227 PF12340 DUF3638: Protein of u 94.0 0.12 2.5E-06 57.0 6.7 73 282-355 20-92 (229)
228 PRK04296 thymidine kinase; Pro 93.9 0.16 3.5E-06 54.8 7.8 34 307-341 5-38 (190)
229 COG3421 Uncharacterized protei 93.4 0.06 1.3E-06 65.0 3.6 37 310-346 3-40 (812)
230 PRK07003 DNA polymerase III su 93.3 1.1 2.5E-05 57.1 14.6 42 290-331 21-65 (830)
231 PF00249 Myb_DNA-binding: Myb- 93.3 0.07 1.5E-06 43.9 2.8 29 1082-1110 2-30 (48)
232 TIGR01447 recD exodeoxyribonuc 93.2 0.37 8E-06 60.9 10.3 54 288-345 148-205 (586)
233 PRK06526 transposase; Provisio 92.8 0.54 1.2E-05 53.2 9.9 54 291-353 89-142 (254)
234 TIGR02881 spore_V_K stage V sp 92.7 0.26 5.6E-06 56.0 7.3 27 305-331 43-69 (261)
235 PRK14956 DNA polymerase III su 92.7 0.41 8.9E-06 58.5 9.3 42 290-331 23-67 (484)
236 PRK09112 DNA polymerase III su 92.7 0.34 7.3E-06 57.4 8.5 42 290-331 28-72 (351)
237 PRK07764 DNA polymerase III su 92.6 2.1 4.5E-05 56.3 16.2 25 307-331 40-64 (824)
238 PRK12402 replication factor C 92.5 0.58 1.3E-05 55.0 10.2 40 293-332 23-64 (337)
239 PRK10875 recD exonuclease V su 92.4 0.36 7.7E-06 61.3 8.7 57 286-346 153-212 (615)
240 smart00382 AAA ATPases associa 92.1 0.47 1E-05 46.8 7.7 43 304-347 2-44 (148)
241 PRK12723 flagellar biosynthesi 92.1 1.3 2.9E-05 53.1 12.4 56 428-483 254-314 (388)
242 smart00717 SANT SANT SWI3, AD 92.0 0.16 3.6E-06 41.0 3.4 30 1082-1111 2-31 (49)
243 KOG1911 Heterochromatin-associ 92.0 0.087 1.9E-06 60.2 2.3 25 131-155 64-89 (270)
244 KOG0383 Predicted helicase [Ge 91.7 0.072 1.6E-06 67.1 1.4 71 50-152 176-246 (696)
245 COG1875 NYN ribonuclease and A 91.7 0.58 1.3E-05 54.2 8.4 73 271-345 213-288 (436)
246 cd00167 SANT 'SWI3, ADA2, N-Co 91.7 0.17 3.8E-06 40.1 3.1 29 1083-1111 1-29 (45)
247 PF15446 zf-PHD-like: PHD/FYVE 91.6 0.19 4.2E-06 51.7 3.9 34 63-96 124-175 (175)
248 PRK12323 DNA polymerase III su 91.4 1.5 3.2E-05 55.4 12.1 26 306-331 40-65 (700)
249 PRK08181 transposase; Validate 91.0 1.8 3.9E-05 49.4 11.6 53 286-339 88-140 (269)
250 PRK05703 flhF flagellar biosyn 90.9 2.2 4.8E-05 52.0 12.9 56 428-483 299-359 (424)
251 smart00492 HELICc3 helicase su 90.7 1.2 2.5E-05 45.8 8.8 45 660-706 33-79 (141)
252 TIGR03420 DnaA_homol_Hda DnaA 90.7 1.3 2.8E-05 48.8 10.0 43 303-347 37-79 (226)
253 TIGR03015 pepcterm_ATPase puta 90.3 1.5 3.3E-05 49.6 10.4 42 288-329 26-68 (269)
254 PRK14960 DNA polymerase III su 90.0 8.5 0.00018 49.0 16.9 37 294-330 24-63 (702)
255 TIGR02880 cbbX_cfxQ probable R 89.8 0.51 1.1E-05 54.3 6.0 37 304-340 58-97 (284)
256 CHL00181 cbbX CbbX; Provisiona 89.6 0.59 1.3E-05 53.9 6.2 29 304-332 59-87 (287)
257 smart00491 HELICc2 helicase su 89.1 1.4 3E-05 45.3 7.8 54 652-706 23-80 (142)
258 PHA02533 17 large terminase pr 89.1 2.3 4.9E-05 53.3 11.3 55 284-342 58-113 (534)
259 PF06862 DUF1253: Protein of u 89.1 4.4 9.6E-05 49.2 13.2 126 608-735 281-414 (442)
260 KOG4443 Putative transcription 89.0 0.13 2.9E-06 62.8 0.4 60 50-109 17-87 (694)
261 PRK14949 DNA polymerase III su 89.0 2.2 4.8E-05 55.7 11.1 42 290-331 21-65 (944)
262 PRK00440 rfc replication facto 89.0 4.2 9.2E-05 47.2 12.9 26 306-331 40-65 (319)
263 PRK08691 DNA polymerase III su 88.8 5.6 0.00012 50.8 14.4 40 292-331 23-65 (709)
264 PF05876 Terminase_GpA: Phage 88.7 0.63 1.4E-05 58.6 6.1 167 284-477 15-190 (557)
265 PRK07994 DNA polymerase III su 88.3 2 4.4E-05 54.6 10.2 42 290-331 21-65 (647)
266 PRK07940 DNA polymerase III su 88.3 2.2 4.7E-05 51.5 10.0 26 306-331 38-63 (394)
267 PRK14974 cell division protein 88.2 3.1 6.7E-05 49.0 10.9 35 306-341 142-176 (336)
268 PRK06645 DNA polymerase III su 88.2 2.1 4.6E-05 53.1 10.1 42 290-331 26-70 (507)
269 PRK14961 DNA polymerase III su 88.1 2.8 6E-05 50.1 10.7 42 289-330 20-64 (363)
270 PRK11889 flhF flagellar biosyn 88.1 4.2 9E-05 48.6 11.7 36 305-341 242-277 (436)
271 PHA02544 44 clamp loader, smal 88.0 3.3 7.2E-05 48.2 11.2 39 429-467 101-141 (316)
272 PRK08084 DNA replication initi 87.8 3 6.6E-05 46.6 10.2 28 304-331 45-72 (235)
273 PRK08116 hypothetical protein; 87.8 4.2 9.2E-05 46.4 11.5 43 304-347 114-156 (268)
274 KOG4299 PHD Zn-finger protein 87.6 0.35 7.6E-06 59.2 2.7 47 51-97 47-94 (613)
275 PRK08727 hypothetical protein; 87.6 4.1 8.8E-05 45.5 11.0 27 306-332 43-69 (233)
276 PRK05707 DNA polymerase III su 87.1 2.4 5.2E-05 49.9 9.2 47 285-331 3-49 (328)
277 KOG0989 Replication factor C, 87.0 3.4 7.3E-05 47.2 9.6 43 289-331 40-84 (346)
278 PRK14958 DNA polymerase III su 86.7 5.1 0.00011 50.0 12.2 42 290-331 21-65 (509)
279 PRK08451 DNA polymerase III su 86.7 4.3 9.2E-05 50.7 11.4 40 292-331 21-63 (535)
280 PRK14955 DNA polymerase III su 86.6 6 0.00013 47.9 12.6 42 290-331 21-65 (397)
281 KOG0457 Histone acetyltransfer 86.6 0.49 1.1E-05 55.6 3.0 31 1081-1111 72-102 (438)
282 PF00249 Myb_DNA-binding: Myb- 86.4 1.5 3.2E-05 36.0 5.0 42 969-1012 4-46 (48)
283 PRK14964 DNA polymerase III su 86.4 3.9 8.5E-05 50.5 10.8 40 292-331 20-62 (491)
284 PRK14952 DNA polymerase III su 86.2 5 0.00011 50.8 11.8 42 290-331 18-62 (584)
285 PRK14957 DNA polymerase III su 86.0 4 8.7E-05 51.1 10.8 39 292-330 23-64 (546)
286 PRK09111 DNA polymerase III su 86.0 3.8 8.3E-05 52.0 10.8 42 290-331 29-73 (598)
287 PF13177 DNA_pol3_delta2: DNA 86.0 4.5 9.8E-05 42.5 9.7 44 290-333 2-48 (162)
288 PRK14962 DNA polymerase III su 85.9 3.6 7.7E-05 50.9 10.2 25 307-331 39-63 (472)
289 PF13173 AAA_14: AAA domain 85.5 3.9 8.4E-05 40.9 8.6 26 304-329 2-27 (128)
290 cd00167 SANT 'SWI3, ADA2, N-Co 85.5 1.7 3.8E-05 34.2 4.9 42 969-1012 2-43 (45)
291 PRK07471 DNA polymerase III su 85.3 4.6 0.0001 48.2 10.5 44 289-332 23-69 (365)
292 PRK00149 dnaA chromosomal repl 85.2 6 0.00013 48.7 11.9 41 305-345 149-190 (450)
293 PRK08769 DNA polymerase III su 85.2 6.6 0.00014 46.0 11.4 48 285-332 4-54 (319)
294 KOG0957 PHD finger protein [Ge 85.1 0.77 1.7E-05 54.2 3.6 64 50-117 118-194 (707)
295 PF13245 AAA_19: Part of AAA d 85.0 2.3 5.1E-05 38.7 6.1 44 304-347 10-56 (76)
296 TIGR02928 orc1/cdc6 family rep 84.9 4.1 8.9E-05 48.5 10.0 45 286-330 19-66 (365)
297 TIGR00362 DnaA chromosomal rep 84.9 6.2 0.00014 47.9 11.6 35 306-340 138-173 (405)
298 PF00448 SRP54: SRP54-type pro 84.6 3.5 7.5E-05 44.8 8.3 34 307-341 4-37 (196)
299 KOG1805 DNA replication helica 84.3 3.9 8.4E-05 52.9 9.4 161 285-468 669-831 (1100)
300 PRK14951 DNA polymerase III su 84.3 3.7 8E-05 52.2 9.5 42 290-331 21-65 (618)
301 PHA03368 DNA packaging termina 84.0 8.3 0.00018 48.7 11.9 129 303-465 253-389 (738)
302 PRK14950 DNA polymerase III su 84.0 6 0.00013 50.4 11.3 41 290-330 21-64 (585)
303 TIGR02768 TraA_Ti Ti-type conj 83.9 7 0.00015 51.2 12.0 60 283-346 350-409 (744)
304 PRK08058 DNA polymerase III su 83.9 4.5 9.7E-05 47.7 9.5 76 289-367 10-88 (329)
305 PRK14963 DNA polymerase III su 83.7 5.9 0.00013 49.4 10.8 42 290-331 19-63 (504)
306 smart00717 SANT SANT SWI3, AD 83.5 2 4.4E-05 34.4 4.6 45 968-1014 3-47 (49)
307 COG1200 RecG RecG-like helicas 83.4 14 0.00031 46.6 13.7 96 606-704 293-393 (677)
308 PF13921 Myb_DNA-bind_6: Myb-l 83.3 1 2.3E-05 38.7 2.9 41 1084-1129 1-41 (60)
309 cd01121 Sms Sms (bacterial rad 82.7 6.8 0.00015 46.9 10.4 51 302-353 80-130 (372)
310 TIGR00595 priA primosomal prot 82.6 8.2 0.00018 48.3 11.5 95 605-703 6-101 (505)
311 PRK14087 dnaA chromosomal repl 82.4 7.1 0.00015 48.1 10.7 44 305-348 142-186 (450)
312 PRK14948 DNA polymerase III su 82.3 7.3 0.00016 49.9 11.0 42 290-331 21-65 (620)
313 KOG1512 PHD Zn-finger protein 82.1 0.46 1E-05 52.3 0.3 61 51-111 258-335 (381)
314 PHA03333 putative ATPase subun 81.9 11 0.00024 47.9 11.8 59 288-347 172-231 (752)
315 PRK13889 conjugal transfer rel 81.8 6.8 0.00015 52.4 10.8 60 283-346 344-403 (988)
316 PRK14969 DNA polymerase III su 81.7 7.8 0.00017 48.7 10.9 41 290-330 21-64 (527)
317 PF00580 UvrD-helicase: UvrD/R 81.7 2.9 6.3E-05 48.2 6.8 54 286-345 1-57 (315)
318 PF15446 zf-PHD-like: PHD/FYVE 81.5 0.67 1.4E-05 47.9 1.1 47 53-99 1-61 (175)
319 PF14446 Prok-RING_1: Prokaryo 81.4 0.79 1.7E-05 38.5 1.3 30 51-80 5-38 (54)
320 PRK05580 primosome assembly pr 81.0 10 0.00022 49.2 11.9 95 606-704 172-267 (679)
321 PRK06893 DNA replication initi 80.7 10 0.00022 42.2 10.3 27 306-332 41-67 (229)
322 TIGR01557 myb_SHAQKYF myb-like 80.5 2 4.2E-05 36.9 3.4 28 1081-1108 3-33 (57)
323 PRK06871 DNA polymerase III su 80.5 8.7 0.00019 45.1 10.0 47 286-332 3-52 (325)
324 PF06733 DEAD_2: DEAD_2; Inte 80.4 1.3 2.9E-05 46.9 3.1 38 405-442 118-159 (174)
325 PRK14722 flhF flagellar biosyn 80.2 17 0.00037 43.4 12.5 40 302-341 135-175 (374)
326 COG0593 DnaA ATPase involved i 80.1 8 0.00017 46.5 9.6 41 428-468 175-221 (408)
327 PRK14088 dnaA chromosomal repl 80.1 10 0.00023 46.5 11.0 37 305-341 131-168 (440)
328 PRK04132 replication factor C 79.7 5.6 0.00012 52.3 8.8 47 428-474 630-677 (846)
329 PRK05563 DNA polymerase III su 79.5 11 0.00024 47.8 11.2 25 307-331 41-65 (559)
330 PHA03372 DNA packaging termina 79.4 4.5 9.8E-05 50.3 7.4 130 302-465 201-336 (668)
331 PRK14086 dnaA chromosomal repl 79.0 14 0.0003 46.8 11.7 43 306-348 316-359 (617)
332 KOG1246 DNA-binding protein ju 78.6 1.5 3.1E-05 58.8 3.2 49 50-98 154-204 (904)
333 PRK07133 DNA polymerase III su 78.5 9 0.00019 49.4 10.0 40 292-331 25-67 (725)
334 PF05621 TniB: Bacterial TniB 78.5 15 0.00033 42.4 10.8 45 422-466 139-189 (302)
335 PRK14959 DNA polymerase III su 78.3 8.8 0.00019 48.7 9.7 37 294-330 25-64 (624)
336 PF01695 IstB_IS21: IstB-like 78.3 3.2 6.9E-05 44.4 5.1 47 302-353 45-91 (178)
337 PRK06647 DNA polymerase III su 77.9 9.4 0.0002 48.3 9.9 25 307-331 41-65 (563)
338 PRK14953 DNA polymerase III su 77.7 13 0.00027 46.3 10.8 41 290-330 21-64 (486)
339 PRK11054 helD DNA helicase IV; 77.6 11 0.00024 48.8 10.6 76 284-365 195-276 (684)
340 COG1484 DnaC DNA replication p 77.5 7.7 0.00017 44.0 8.2 66 287-353 88-153 (254)
341 PRK05642 DNA replication initi 77.5 10 0.00022 42.4 9.0 36 430-465 99-138 (234)
342 PRK10917 ATP-dependent DNA hel 76.9 13 0.00028 48.4 11.0 97 606-705 292-393 (681)
343 COG3267 ExeA Type II secretory 76.8 12 0.00027 41.8 9.1 51 302-354 48-105 (269)
344 PRK14965 DNA polymerase III su 76.7 16 0.00035 46.5 11.6 40 292-331 23-65 (576)
345 PRK00771 signal recognition pa 76.7 10 0.00023 46.3 9.5 37 305-341 96-132 (437)
346 PRK14954 DNA polymerase III su 76.7 13 0.00029 47.4 10.7 42 290-331 21-65 (620)
347 PRK06964 DNA polymerase III su 76.4 12 0.00026 44.2 9.7 47 286-332 2-49 (342)
348 PRK12422 chromosomal replicati 76.4 9.8 0.00021 46.7 9.2 36 305-341 142-177 (445)
349 COG1198 PriA Primosomal protei 76.3 12 0.00025 48.5 10.1 111 536-687 195-306 (730)
350 PRK04195 replication factor C 76.2 20 0.00044 44.6 12.1 42 286-328 18-63 (482)
351 PF12861 zf-Apc11: Anaphase-pr 75.9 0.9 1.9E-05 42.0 0.1 43 54-98 35-80 (85)
352 PRK13342 recombination factor 75.4 14 0.0003 45.0 10.2 24 305-328 37-60 (413)
353 KOG3612 PHD Zn-finger protein 75.4 2 4.4E-05 51.8 2.9 50 49-98 58-108 (588)
354 PRK05896 DNA polymerase III su 74.9 22 0.00048 45.0 11.8 40 292-331 23-65 (605)
355 PRK00411 cdc6 cell division co 74.8 15 0.00032 44.3 10.3 46 287-332 35-83 (394)
356 KOG0991 Replication factor C, 74.5 5.6 0.00012 43.7 5.6 27 304-330 48-74 (333)
357 PRK06090 DNA polymerase III su 74.4 19 0.00042 42.1 10.6 48 285-332 3-53 (319)
358 PRK06731 flhF flagellar biosyn 74.2 25 0.00055 40.2 11.2 47 303-350 74-124 (270)
359 KOG1473 Nucleosome remodeling 74.2 0.66 1.4E-05 59.8 -1.6 51 48-98 425-479 (1414)
360 PRK11823 DNA repair protein Ra 73.7 18 0.0004 44.5 10.6 53 302-355 78-130 (446)
361 PTZ00112 origin recognition co 73.6 23 0.00049 46.5 11.3 45 286-330 759-807 (1164)
362 KOG0952 DNA/RNA helicase MER3/ 73.5 3.1 6.7E-05 54.2 3.9 111 302-443 941-1061(1230)
363 PRK07993 DNA polymerase III su 73.2 15 0.00032 43.4 9.4 47 285-331 2-51 (334)
364 KOG0384 Chromodomain-helicase 73.2 1.8 3.9E-05 57.0 1.9 39 131-175 300-338 (1373)
365 PRK12727 flagellar biosynthesi 73.0 35 0.00076 42.6 12.6 38 303-340 349-387 (559)
366 TIGR00678 holB DNA polymerase 72.8 24 0.00051 37.8 10.1 27 305-331 15-41 (188)
367 PRK10865 protein disaggregatio 72.7 14 0.0003 49.3 10.0 37 294-330 187-225 (857)
368 PF00004 AAA: ATPase family as 72.3 6.9 0.00015 38.6 5.5 34 308-345 2-35 (132)
369 COG2256 MGS1 ATPase related to 72.1 14 0.00031 43.8 8.6 25 303-327 47-71 (436)
370 COG0470 HolB ATPase involved i 71.6 12 0.00025 43.6 8.1 30 303-332 22-52 (325)
371 KOG4628 Predicted E3 ubiquitin 71.5 2.2 4.9E-05 49.7 2.0 44 52-98 230-276 (348)
372 COG3973 Superfamily I DNA and 70.8 7.2 0.00016 48.3 5.9 49 302-350 224-277 (747)
373 TIGR00643 recG ATP-dependent D 70.5 20 0.00043 46.3 10.4 97 606-705 266-367 (630)
374 PRK13826 Dtr system oriT relax 70.3 27 0.00058 47.4 11.6 58 284-345 380-437 (1102)
375 cd01120 RecA-like_NTPases RecA 70.1 31 0.00067 35.0 10.0 36 307-343 2-37 (165)
376 TIGR03689 pup_AAA proteasome A 69.3 13 0.00029 46.2 8.0 28 303-330 215-242 (512)
377 PTZ00293 thymidine kinase; Pro 69.3 14 0.0003 40.6 7.3 36 307-343 7-42 (211)
378 PRK12724 flagellar biosynthesi 69.3 26 0.00057 42.5 10.2 22 307-328 226-247 (432)
379 PRK05986 cob(I)alamin adenolsy 69.2 55 0.0012 35.4 11.7 63 421-483 108-174 (191)
380 TIGR03345 VI_ClpV1 type VI sec 69.1 16 0.00035 48.6 9.4 42 290-331 192-235 (852)
381 PRK07952 DNA replication prote 69.1 16 0.00034 41.3 7.9 62 288-354 79-144 (244)
382 CHL00095 clpC Clp protease ATP 69.0 2E+02 0.0044 38.4 19.5 25 307-331 542-566 (821)
383 PF11793 FANCL_C: FANCL C-term 68.7 0.54 1.2E-05 42.1 -3.0 47 52-98 3-64 (70)
384 cd03115 SRP The signal recogni 68.4 33 0.00071 36.0 9.9 35 307-341 3-37 (173)
385 PLN03212 Transcription repress 68.3 4.6 9.9E-05 44.7 3.3 50 1081-1133 25-74 (249)
386 TIGR02639 ClpA ATP-dependent C 68.1 25 0.00054 46.2 10.7 29 303-331 202-230 (731)
387 PRK06305 DNA polymerase III su 67.9 24 0.00053 43.4 10.0 42 290-331 22-66 (451)
388 cd01124 KaiC KaiC is a circadi 67.9 13 0.00028 39.4 6.8 48 307-355 2-49 (187)
389 PF00308 Bac_DnaA: Bacterial d 67.3 44 0.00095 37.0 11.0 37 428-464 97-137 (219)
390 TIGR02397 dnaX_nterm DNA polym 67.1 51 0.0011 38.9 12.3 40 292-331 21-63 (355)
391 PRK06835 DNA replication prote 67.0 14 0.00029 43.6 7.2 49 284-332 159-211 (329)
392 PRK13341 recombination factor 66.8 17 0.00037 47.3 8.7 24 305-328 53-76 (725)
393 PF01393 Chromo_shadow: Chromo 66.2 2.6 5.6E-05 36.3 0.8 26 192-217 3-28 (58)
394 TIGR00708 cobA cob(I)alamin ad 66.0 8.8 0.00019 40.8 4.8 59 421-479 90-152 (173)
395 COG1419 FlhF Flagellar GTP-bin 65.8 75 0.0016 38.3 12.9 71 411-484 266-341 (407)
396 PRK13833 conjugal transfer pro 65.7 11 0.00023 44.3 6.0 47 281-330 124-170 (323)
397 PRK07399 DNA polymerase III su 65.7 28 0.0006 40.8 9.4 43 290-332 9-54 (314)
398 PRK10867 signal recognition pa 64.7 37 0.00081 41.5 10.5 35 307-341 103-138 (433)
399 TIGR01425 SRP54_euk signal rec 64.5 75 0.0016 38.8 12.9 34 307-341 103-136 (429)
400 cd00561 CobA_CobO_BtuR ATP:cor 64.3 50 0.0011 34.7 10.0 58 421-478 88-149 (159)
401 KOG1133 Helicase of the DEAD s 64.3 11 0.00025 47.2 5.9 46 284-329 14-59 (821)
402 TIGR03346 chaperone_ClpB ATP-d 64.0 19 0.0004 48.2 8.5 38 293-330 181-220 (852)
403 PRK14873 primosome assembly pr 63.7 30 0.00065 44.7 9.9 94 606-703 170-265 (665)
404 CHL00095 clpC Clp protease ATP 63.6 25 0.00055 46.8 9.6 29 303-331 199-227 (821)
405 PLN03091 hypothetical protein; 63.5 7.1 0.00015 46.6 3.9 50 1081-1133 14-63 (459)
406 PRK10865 protein disaggregatio 63.4 4.2E+02 0.0092 35.6 20.8 26 306-331 600-625 (857)
407 PRK08699 DNA polymerase III su 63.2 50 0.0011 38.9 10.9 46 286-331 2-48 (325)
408 KOG2543 Origin recognition com 62.9 2E+02 0.0044 34.4 15.2 142 284-469 8-161 (438)
409 TIGR01557 myb_SHAQKYF myb-like 62.6 17 0.00037 31.2 5.1 48 968-1015 5-55 (57)
410 TIGR00416 sms DNA repair prote 62.3 36 0.00077 42.0 9.9 52 302-354 92-143 (454)
411 PF13901 DUF4206: Domain of un 62.1 5.8 0.00013 43.3 2.7 39 50-97 151-197 (202)
412 TIGR00959 ffh signal recogniti 62.0 38 0.00081 41.4 9.8 36 306-341 101-137 (428)
413 PRK10416 signal recognition pa 61.2 83 0.0018 36.9 12.2 33 307-340 117-149 (318)
414 PRK11034 clpA ATP-dependent Cl 61.1 20 0.00044 47.0 7.8 29 303-331 206-234 (758)
415 CHL00206 ycf2 Ycf2; Provisiona 61.0 25 0.00054 49.6 8.7 43 302-348 1628-1670(2281)
416 TIGR02640 gas_vesic_GvpN gas v 60.7 21 0.00045 40.6 7.1 49 288-340 5-53 (262)
417 PRK10919 ATP-dependent DNA hel 60.4 15 0.00033 47.7 6.5 53 285-343 2-57 (672)
418 COG1435 Tdk Thymidine kinase [ 59.6 34 0.00073 37.0 7.7 34 429-465 83-118 (201)
419 PRK14971 DNA polymerase III su 59.4 92 0.002 40.0 13.1 24 307-330 42-65 (614)
420 PRK05973 replicative DNA helic 58.7 25 0.00054 39.4 7.0 57 297-354 57-113 (237)
421 KOG0048 Transcription factor, 58.0 8.2 0.00018 43.3 3.1 49 1082-1133 10-58 (238)
422 KOG0442 Structure-specific end 57.9 3.5E+02 0.0075 35.6 17.1 44 603-646 347-400 (892)
423 TIGR00064 ftsY signal recognit 57.5 81 0.0018 36.1 11.1 33 307-340 75-107 (272)
424 KOG1081 Transcription factor N 57.2 6.9 0.00015 48.1 2.5 46 50-98 88-133 (463)
425 PF00265 TK: Thymidine kinase; 57.1 37 0.00081 36.2 7.8 34 308-342 5-38 (176)
426 smart00300 ChSh Chromo Shadow 57.0 7 0.00015 34.1 1.8 24 192-215 7-30 (61)
427 TIGR03499 FlhF flagellar biosy 56.8 39 0.00085 38.9 8.5 38 304-341 194-232 (282)
428 KOG0737 AAA+-type ATPase [Post 56.8 12 0.00027 43.8 4.3 50 302-355 125-174 (386)
429 KOG4218 Nuclear hormone recept 56.4 4.2 9.2E-05 46.2 0.5 66 47-112 11-95 (475)
430 KOG1807 Helicases [Replication 55.9 29 0.00062 44.3 7.3 90 285-380 378-473 (1025)
431 TIGR02782 TrbB_P P-type conjug 55.7 23 0.00049 41.2 6.3 44 284-330 115-158 (299)
432 TIGR01074 rep ATP-dependent DN 55.5 19 0.0004 46.8 6.2 63 286-354 2-68 (664)
433 KOG1244 Predicted transcriptio 55.4 3 6.6E-05 46.0 -0.8 60 50-109 223-300 (336)
434 PF06564 YhjQ: YhjQ protein; 55.2 22 0.00047 40.0 5.8 34 311-345 9-44 (243)
435 PF00437 T2SE: Type II/IV secr 55.0 19 0.00041 41.0 5.5 44 295-339 118-161 (270)
436 PLN03212 Transcription repress 54.9 26 0.00056 39.0 6.1 28 1082-1110 79-106 (249)
437 TIGR01075 uvrD DNA helicase II 54.9 30 0.00064 45.4 7.9 66 285-356 4-73 (715)
438 COG0552 FtsY Signal recognitio 54.9 68 0.0015 37.6 9.7 56 308-364 143-198 (340)
439 PF06745 KaiC: KaiC; InterPro 54.6 22 0.00047 39.3 5.7 55 302-356 17-71 (226)
440 COG4626 Phage terminase-like p 54.5 65 0.0014 40.1 10.0 59 284-342 60-127 (546)
441 PRK06995 flhF flagellar biosyn 54.4 63 0.0014 40.1 10.1 33 307-339 259-292 (484)
442 PRK09376 rho transcription ter 54.2 20 0.00043 43.0 5.5 30 302-331 167-196 (416)
443 COG0541 Ffh Signal recognition 53.7 55 0.0012 39.6 9.0 113 307-462 103-218 (451)
444 CHL00176 ftsH cell division pr 53.7 58 0.0013 42.0 10.0 25 304-328 216-240 (638)
445 cd01128 rho_factor Transcripti 53.6 57 0.0012 36.9 8.9 26 302-327 14-39 (249)
446 PRK11773 uvrD DNA-dependent he 53.3 23 0.00051 46.4 6.6 53 285-343 9-64 (721)
447 PF03354 Terminase_1: Phage Te 53.0 1.2E+02 0.0026 37.7 12.5 45 420-466 115-162 (477)
448 cd00034 ChSh Chromo Shadow Dom 52.9 5.8 0.00013 33.7 0.7 22 194-215 2-24 (54)
449 PF06068 TIP49: TIP49 C-termin 52.8 21 0.00045 42.3 5.3 40 303-344 49-88 (398)
450 PF13832 zf-HC5HC2H_2: PHD-zin 52.7 6.7 0.00014 38.3 1.1 29 51-79 55-86 (110)
451 PRK08939 primosomal protein Dn 52.5 23 0.00049 41.4 5.7 46 293-339 143-190 (306)
452 KOG0740 AAA+-type ATPase [Post 52.4 17 0.00037 43.9 4.7 47 305-355 187-233 (428)
453 PRK06921 hypothetical protein; 52.2 43 0.00092 38.3 7.7 39 303-341 116-154 (266)
454 TIGR00767 rho transcription te 51.9 54 0.0012 39.6 8.6 30 302-331 166-195 (415)
455 PF13639 zf-RING_2: Ring finge 51.4 1.6 3.4E-05 35.1 -2.9 40 52-96 1-44 (44)
456 KOG0738 AAA+-type ATPase [Post 51.4 51 0.0011 39.2 8.0 47 305-355 246-292 (491)
457 PF13771 zf-HC5HC2H: PHD-like 50.5 7.4 0.00016 36.4 1.0 31 49-79 34-67 (90)
458 PRK14723 flhF flagellar biosyn 50.4 84 0.0018 41.1 10.6 35 306-340 187-222 (767)
459 cd00730 rubredoxin Rubredoxin; 50.4 9.2 0.0002 31.9 1.4 34 65-99 3-44 (50)
460 PF14061 Mtf2_C: Polycomb-like 50.1 8.2 0.00018 31.7 1.0 22 196-217 27-49 (50)
461 PRK14721 flhF flagellar biosyn 49.3 1.2E+02 0.0025 37.2 11.1 53 428-481 269-326 (420)
462 cd01129 PulE-GspE PulE/GspE Th 49.0 34 0.00073 39.0 6.2 43 286-330 64-106 (264)
463 COG1474 CDC6 Cdc6-related prot 48.9 2E+02 0.0044 34.5 13.0 47 285-331 20-69 (366)
464 PRK05564 DNA polymerase III su 48.9 86 0.0019 36.6 9.8 25 307-331 29-53 (313)
465 PRK12377 putative replication 48.8 48 0.001 37.5 7.3 43 304-347 101-143 (248)
466 PF05127 Helicase_RecD: Helica 48.8 17 0.00037 38.8 3.5 35 308-342 1-35 (177)
467 TIGR00580 mfd transcription-re 48.0 84 0.0018 42.4 10.5 96 606-704 482-582 (926)
468 COG5114 Histone acetyltransfer 47.7 16 0.00035 41.4 3.1 35 1074-1110 58-92 (432)
469 TIGR00682 lpxK tetraacyldisacc 47.2 81 0.0018 36.9 9.1 59 313-371 39-111 (311)
470 PF02606 LpxK: Tetraacyldisacc 47.1 87 0.0019 36.9 9.4 122 314-467 47-189 (326)
471 PHA02929 N1R/p28-like protein; 47.1 7.1 0.00015 43.5 0.4 49 50-102 173-229 (238)
472 PRK13894 conjugal transfer ATP 46.8 38 0.00083 39.7 6.4 44 283-329 130-173 (319)
473 PHA00012 I assembly protein 46.6 43 0.00094 39.1 6.5 25 308-332 5-29 (361)
474 PLN03208 E3 ubiquitin-protein 46.6 8.3 0.00018 41.4 0.8 50 51-100 18-79 (193)
475 TIGR03877 thermo_KaiC_1 KaiC d 46.3 52 0.0011 36.7 7.2 52 302-354 19-70 (237)
476 cd00984 DnaB_C DnaB helicase C 46.3 28 0.0006 38.7 5.0 44 300-343 9-52 (242)
477 COG1066 Sms Predicted ATP-depe 46.2 77 0.0017 38.1 8.5 49 306-356 95-143 (456)
478 PF12846 AAA_10: AAA-like doma 46.2 37 0.00079 38.7 6.1 44 304-348 1-44 (304)
479 PRK14712 conjugal transfer nic 46.0 98 0.0021 43.9 10.8 59 285-345 835-896 (1623)
480 PRK08533 flagellar accessory p 46.0 54 0.0012 36.5 7.2 52 302-354 22-73 (230)
481 COG5219 Uncharacterized conser 45.3 3.9 8.5E-05 52.1 -2.1 46 51-98 1469-1521(1525)
482 PHA00673 acetyltransferase dom 45.3 29 0.00062 36.2 4.4 44 429-472 88-134 (154)
483 PF05970 PIF1: PIF1-like helic 45.0 44 0.00096 40.0 6.7 60 285-345 1-62 (364)
484 PRK09183 transposase/IS protei 45.0 23 0.0005 40.2 4.1 46 290-340 92-137 (259)
485 PRK12726 flagellar biosynthesi 44.9 2.4E+02 0.0053 34.0 12.5 46 304-350 206-255 (407)
486 KOG2340 Uncharacterized conser 44.4 71 0.0015 39.3 7.9 121 613-735 540-667 (698)
487 PRK10263 DNA translocase FtsK; 44.4 63 0.0014 44.3 8.3 40 304-343 1010-1052(1355)
488 TIGR01547 phage_term_2 phage t 44.4 79 0.0017 38.2 8.9 36 307-342 4-41 (396)
489 TIGR03880 KaiC_arch_3 KaiC dom 44.4 59 0.0013 35.8 7.2 52 303-355 15-66 (224)
490 TIGR01243 CDC48 AAA family ATP 44.3 42 0.00092 44.1 6.9 42 303-348 486-527 (733)
491 PRK13709 conjugal transfer nic 44.2 88 0.0019 44.8 10.1 61 284-346 966-1029(1747)
492 PRK13766 Hef nuclease; Provisi 44.2 3.8E+02 0.0082 35.5 15.9 93 606-705 39-141 (773)
493 PRK08760 replicative DNA helic 43.7 64 0.0014 40.2 7.9 63 293-355 218-280 (476)
494 PRK06646 DNA polymerase III su 43.7 36 0.00078 35.5 4.9 40 605-644 10-49 (154)
495 COG0467 RAD55 RecA-superfamily 43.3 58 0.0013 36.8 7.1 52 302-354 21-72 (260)
496 PRK05728 DNA polymerase III su 43.0 41 0.00088 34.6 5.1 39 606-644 11-49 (142)
497 TIGR03881 KaiC_arch_4 KaiC dom 42.9 70 0.0015 35.3 7.5 52 301-353 17-68 (229)
498 KOG0780 Signal recognition par 42.8 3E+02 0.0064 33.1 12.3 73 604-676 109-185 (483)
499 KOG0780 Signal recognition par 42.8 61 0.0013 38.5 6.9 56 308-364 105-160 (483)
500 KOG1133 Helicase of the DEAD s 42.6 15 0.00032 46.3 2.1 39 404-442 321-362 (821)
No 1
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=5.5e-173 Score=1560.55 Aligned_cols=926 Identities=42% Similarity=0.720 Sum_probs=757.0
Q ss_pred ccccccccccccCccCCC----Ccccc--------cchhhhhHHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHH
Q 000811 101 DIDKILDCEMRPTVAGDS----DVSKL--------GSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVN 168 (1272)
Q Consensus 101 ~iekil~~R~rp~~~~~~----~~~~~--------~~~~~~~~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~ 168 (1272)
.|+.++++|.++...+.. ..... ..+.....||||||+|+||+||||+|+++|... ..+.-+|++
T Consensus 184 ~ie~v~~~r~~~~~~~~~~~~~~i~d~~~p~~~~~~~~~~e~~qFlIKWkg~SyLHctWet~~~L~~~---~~rG~kKv~ 260 (1373)
T KOG0384|consen 184 TIERVLDHRGKKGATGSAETEYAIPDKGDPSAVFEEKKTEEEEQFLIKWKGWSYLHCTWETESELLEM---NVRGLKKVD 260 (1373)
T ss_pred hhHHHhhhhccccccCCCcccccccccCCccccccccCcchhhhhheeeccccceeccccchHHHHhh---hHHHHHHHH
Confidence 688889888665544311 00100 111134579999999999999999999998643 233346999
Q ss_pred hhhhhcccCCC--CchhhccCCCCccchhhhhhhccCCCcceEEeeccccccccccccccccccc-chHHHHHHHHHhhc
Q 000811 169 NFHRQMSSNNN--AEEDFVAIRPEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISA-FQPEIERFIKIQSR 245 (1272)
Q Consensus 169 ~f~k~~~~~~~--~~ed~~~~~~~~~~veRIi~~r~~~~~~eyLVKWkgL~Y~~~tWE~~~~~~~-~~~~i~~f~~~~~~ 245 (1272)
||.++...... ..++...++++|.+|||||++....+ .+|||||+||||++||||...+|.. .+.++++|..+...
T Consensus 261 nf~kK~~e~~~~~r~E~~~~~~~dy~~VdRIia~~~~~d-~eYLvKW~~LpY~e~TWE~~~~I~~~~~~~~~~~~~Re~s 339 (1373)
T KOG0384|consen 261 NFKKKVIEEDRWRRQEREEDLNKDYVIVDRIIAEQTSKD-PEYLVKWRGLPYEECTWEDAEDIAKKAQEEIEEFQSRENS 339 (1373)
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcccCCC-ceeEEEecCCCcccccccchhhhhhhHHHHHHHHhhhhcc
Confidence 99988543221 12344568999999999999986655 8999999999999999999999864 67788888865432
Q ss_pred ccccccCcCCCCCcccccccCCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH
Q 000811 246 SHRSSCNKQKSSPQDVTESTKKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL 325 (1272)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l 325 (1272)
.. .|...+...+.++.|.++..||.|+.|.+||+||++|+|||.++|+++.+||||||||||||+|+|+||
T Consensus 340 k~---------~p~~~~~~~~~rp~~~Kle~qp~~~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl 410 (1373)
T KOG0384|consen 340 KT---------LPNKGCKYRPQRPRFRKLEKQPEYKGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL 410 (1373)
T ss_pred cc---------CCCCccccCccchhHHHhhcCccccccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH
Confidence 21 122223344567789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCC--CCcEEEEecCccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccc
Q 000811 326 ASLFGER--ISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQD 403 (1272)
Q Consensus 326 ~~l~~~~--~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (1272)
.+|+... .||||||||+|++.+|++||..|+ ++|+++|+|+..+|+.|++|+|++.... .
T Consensus 411 ~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~i~y~g~~~sr~~i~~ye~~~~~~~-----------------~ 472 (1373)
T KOG0384|consen 411 SYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNVIVYHGNLESRQLIRQYEFYHSSNT-----------------K 472 (1373)
T ss_pred HHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhceeeeecchhHHHHHHHHHheecCCc-----------------c
Confidence 9998754 589999999999999999999999 9999999999999999999999876541 2
Q ss_pred cccccEEEecHHHHHhhhhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcC
Q 000811 404 RIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 404 ~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1272)
..+|+++||||+++.+|...|..++|.+++|||||||||..|+++..|..+...||||+||||+|||+.|||+|||||+|
T Consensus 473 ~lkf~~lltTye~~LkDk~~L~~i~w~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P 552 (1373)
T KOG0384|consen 473 KLKFNALLTTYEIVLKDKAELSKIPWRYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMP 552 (1373)
T ss_pred ccccceeehhhHHHhccHhhhccCCcceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC
Q 000811 484 GKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG 563 (1272)
Q Consensus 484 ~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~ 563 (1272)
+.|.++++|...| +..++..+..||..|+|+||||+|+||++.|||+.|.|+.|+||.+|+++|++||++|+.+|.++.
T Consensus 553 ~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~ 631 (1373)
T KOG0384|consen 553 GKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGA 631 (1373)
T ss_pred CCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccC
Confidence 9999999999999 778889999999999999999999999999999999999999999999999999999999998754
Q ss_pred -CchhhHHHHHHHHHHHhCCcccccCCCCCcccc------hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh
Q 000811 564 -GAQISLINVVMELRKLCCHPYMLEGVEPDIEDT------NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM 636 (1272)
Q Consensus 564 -~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~------~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ 636 (1272)
++..+++|++|+||||||||||+.+++..+... ++.+..+|.+||||.+|++||.+|++.||||||||||++|
T Consensus 632 ~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRm 711 (1373)
T KOG0384|consen 632 KGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRM 711 (1373)
T ss_pred CCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHH
Confidence 445799999999999999999999988755432 3688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHH
Q 000811 637 LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMA 716 (1272)
Q Consensus 637 ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~g 716 (1272)
||||++||..++|+|.||||++.++.|+++||+||+++|..|||||||||||+||||++||||||||||||||+|+||++
T Consensus 712 LDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqA 791 (1373)
T KOG0384|consen 712 LDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQA 791 (1373)
T ss_pred HHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchh-------ccCCCHHHHHHHHHhchhhhccccccCC
Q 000811 717 RAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-------AQNINQEELDDIIRYGSKELFADENDEG 789 (1272)
Q Consensus 717 RahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~-------~~~~~~~el~~ll~~ga~~lf~~~~~~~ 789 (1272)
|||||||++.|.||||||++||||.|+++|++||.|+++||+.|. ...++++||.+||+|||+++|.++++++
T Consensus 792 RaHRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~ 871 (1373)
T KOG0384|consen 792 RAHRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEE 871 (1373)
T ss_pred HHHhhcccceEEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhcccccc
Confidence 999999999999999999999999999999999999999998775 3578999999999999999999987665
Q ss_pred CCccccCCCHHHHHHHhccCCCCccccCCCCcchhhHHhhhhhhcccchhHHHHHHHHHHHHHHHhhcccCCCccchhhH
Q 000811 790 GKSRQIHYDDAAIDRLLDRDQVGDEEASLDDEDEDGFLKAFKVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYW 869 (1272)
Q Consensus 790 ~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 869 (1272)
.+ +.++|||+||.|+++..++.++ -..++.+|++|+||+|...|+..-+ . ++.-.|
T Consensus 872 s~-----~~e~DIDeIL~rae~~~t~~~~-~~~a~e~ls~fkvad~~~dd~~~~~---------------~---~~didw 927 (1373)
T KOG0384|consen 872 SK-----FCEMDIDEILERAETRITEESD-FMKASELLSQFKVADIKADDPADLE---------------A---ERDIDW 927 (1373)
T ss_pred cc-----ccccCHHHHHhhcccccccccc-cchhHHHHhhccccccccCChhhhh---------------h---hccCCh
Confidence 43 5679999999999886665432 2457889999999999987652211 0 011469
Q ss_pred HHHHHHHHHH-----HHHHHhhhcCCCCCCcc--cccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc
Q 000811 870 EELLKDRYEV-----HKVEEFNALGKGKRSRK--QMVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN 942 (1272)
Q Consensus 870 ~~~~~~~~~~-----~~~~~~~~~~~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 942 (1272)
+.++++...+ ....+...+...+|.|. +......+. + . .++ .++. ..+ . ..
T Consensus 928 d~iipe~~r~~~~eeer~ke~ee~~~~~rer~~k~~~~~~~~~--~-~--~~~----~~e~-----~~~------~--~~ 985 (1373)
T KOG0384|consen 928 DRIIPEEERERIEEEERLKELEELYSEPRERERKKNRLNDSHG--R-A--ESR----SVEK-----SLG------K--KG 985 (1373)
T ss_pred hhhCCHHHHhcchhhhhHHHHHhhccchhhhhhhccccCcccc--c-c--ccc----cccc-----ccc------c--cc
Confidence 9998875432 22333444555555543 332211111 0 0 000 0000 000 0 01
Q ss_pred ccccccCCCCCCCCccccccchhccCCChHHHHHHHHHHHhcCCCccchhhhc--hhhcCCCHHHHHHHHHHHHHhhhhc
Q 000811 943 KKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFT--PRLKQKSYEEIREYGILFLTHITED 1020 (1272)
Q Consensus 943 ~~~~~~~~~~~~pl~~~e~~~l~v~GF~~~~rr~Fv~a~~kyG~~~~~~~~i~--~el~~Ks~~Evk~Y~~lF~~~~~E~ 1020 (1272)
++|.+.+. .....+.||+..+.|.|++++++||.+.+..+.|+ +++..++++++++.+.+....|.+.
T Consensus 986 ~~r~r~~~----------~~g~~~~~~~e~eir~~~ra~~kfg~~~~r~d~~~~~a~l~~~s~~~~~~l~~~~~~~c~~a 1055 (1373)
T KOG0384|consen 986 KGRWREIL----------KRGEEKGGFTEKEIRRFYRAYLKFGLPLERLDEIIKDAELVDKSPAELKKLGELLHNACKSA 1055 (1373)
T ss_pred cccccccc----------ccchhhcCCCHHHHHHHHHHHHHhccHHHHHHHHHhhceeeccCHHHHHHHHHHHHhhhhhh
Confidence 11222111 01235679999999999999999999987766776 5788999999999999999998876
Q ss_pred cCCC----CCcc---C----CCCC-------Cc--chhHHHHHHHHHHHHHHHHHHhccCCCCCCCcccccccccc---C
Q 000811 1021 ITDS----PTFS---D----GVPK-------EG--LRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYP---G 1077 (1272)
Q Consensus 1021 i~d~----~~~~---d----~i~k-------~~--~k~~~vl~ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~~~---~ 1077 (1272)
+.+. .+.. . +.++ ++ +....|+.|+..+..|++.|......+. +..+.|. .
T Consensus 1056 ~~~~~~~~kk~~~~~~~~~~~p~~~a~~~~f~gv~~na~~vl~rv~~L~~L~~~i~~~~e~~~------~~~~~~~~~~~ 1129 (1373)
T KOG0384|consen 1056 VSEFGSNYKKTGGAREGKNKKPERKAVDFKFKGVKVNANKVLLRVEELYYLHKEIPGDPEDPN------QFIIDYLPKSV 1129 (1373)
T ss_pred cchhhhccccccccccccccCccchhhheeecceehhHHHHHHHHHHHHHHHHhccCCccccc------ccccCCCCccc
Confidence 5432 1111 0 0010 01 2345677777777777776655421221 1112221 1
Q ss_pred CCCCCCcCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHH
Q 000811 1078 LRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVIC 1120 (1272)
Q Consensus 1078 ~~~~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~ 1120 (1272)
..+++.|+.++|..||+|||+||||+|++|++||+|+|.+||.
T Consensus 1130 ~~~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~ 1172 (1373)
T KOG0384|consen 1130 HSWDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIF 1172 (1373)
T ss_pred cCcccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhc
Confidence 2378999999999999999999999999999999999999994
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=1.1e-149 Score=1302.43 Aligned_cols=767 Identities=39% Similarity=0.626 Sum_probs=637.5
Q ss_pred CCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh-CC-CCcEEEEecCccHHHHHHHHH
Q 000811 276 HSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ER-ISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 276 ~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~-~~-~~p~LIVvP~sll~qW~~E~~ 353 (1272)
.+|.++.|++|||||++|+|||+.+|.++.|||||||||||||+|+||++.+|+. .+ .|||||+||+||+.||.+||.
T Consensus 158 ~sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 158 DSPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CCchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999987 33 579999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEE
Q 000811 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMI 433 (1272)
Q Consensus 354 ~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vI 433 (1272)
+|+|++++++|+|++..|..+++.-+ ....|+|+||||+++.++...|++++|.++|
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~r~~~-----------------------~~~~fdV~iTsYEi~i~dk~~lk~~~W~ylv 294 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALRRDIM-----------------------LPGRFDVCITSYEIAIKDKSFLKKFNWRYLV 294 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHHHHhh-----------------------ccCCCceEeehHHHHHhhHHHHhcCCceEEE
Confidence 99999999999999999988776422 1248999999999999999999999999999
Q ss_pred eccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHHHHHH
Q 000811 434 VDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQISRLHR 510 (1272)
Q Consensus 434 vDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~---~~~~~i~~L~~ 510 (1272)
|||||||||.+|++++.++.|.+.+||||||||+|||+.|||+|||||.|++|.+.+.|..||... ...+.+.+||.
T Consensus 295 IDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~ 374 (971)
T KOG0385|consen 295 IDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHK 374 (971)
T ss_pred echhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999652 34468999999
Q ss_pred HhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHhCCcccccCC
Q 000811 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGG-AQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~-~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
+|+||+|||+|.+|++.|||+.+.+++|.||.+|+++|+.++.+....++..+. ....++|++|+||||||||||++++
T Consensus 375 vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ 454 (971)
T KOG0385|consen 375 VLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGA 454 (971)
T ss_pred hhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCC
Confidence 999999999999999999999999999999999999999999999999886543 6789999999999999999999999
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
+|.++.+.. .+|+.+||||.+|++||.+|+++||||||||||++|||||++||..++|.||||||+|+.++|..+|+.
T Consensus 455 ePg~pyttd--ehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~ 532 (971)
T KOG0385|consen 455 EPGPPYTTD--EHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEA 532 (971)
T ss_pred CCCCCCCcc--hHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHh
Confidence 997666554 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHH
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKK 749 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K 749 (1272)
||++++.+|||||||||||+||||++|||||+||+|||||.|+||++|||||||+++|.||||||++||||+|+++|..|
T Consensus 533 fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~K 612 (971)
T KOG0385|consen 533 FNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAK 612 (971)
T ss_pred cCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcch-----hccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhccCCCCccccCCCC--cc
Q 000811 750 MVLEHLVVGRL-----KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLDD--ED 822 (1272)
Q Consensus 750 ~~L~~~vig~~-----~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~~--~~ 822 (1272)
+.|++.||+.. +....+++++.+|+++|+..+|...+.+ .++ |||.||.|++..+.+..... .+
T Consensus 613 L~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~--------~~d-Did~il~~~e~kt~e~~~~~~~~~ 683 (971)
T KOG0385|consen 613 LRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGADPVFESKEST--------ISD-DIDRILERGEEKTAELNAKEAKLG 683 (971)
T ss_pred hchhhhhhccCchhhhhccccchHHHHHHHHcCchhhhhhcccc--------cch-hHHHHHHhhhhhccCcchHHHhhC
Confidence 99999999543 2334789999999999999999876643 234 99999999987766533210 11
Q ss_pred hhhHHhhh---hhhcccchhHHHHHHHHHHHHHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 000811 823 EDGFLKAF---KVANFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMV 899 (1272)
Q Consensus 823 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 899 (1272)
.++ +..| .+.+|+..+- .+. .. . . -|-+..+..-.+....-...+..|-|..|++.
T Consensus 684 ~~~-~~~~~~~~~y~~eG~d~----~ek--~~--~-----------~-~wiep~krerk~~d~y~r~~l~~g~~~P~~~~ 742 (971)
T KOG0385|consen 684 ESD-LRNFGMISVYNFEGEDY----KEK--QS--L-----------F-KWIEPPKRERKANDAYFREALRVGEPPPKQPE 742 (971)
T ss_pred cch-hhhcCcceeeccCCcch----hhh--hh--h-----------h-hhcCCchhhhhhhhhHHHHHHhcCCCCCCCcc
Confidence 111 1122 2333332111 000 00 0 0 02221111000000011122333434444443
Q ss_pred ccchhhc-ccccccCCCCcccccccccCCCCCCCCCCCCCCCCcccccccCCCCCCCCcccc---ccchhccCCChHHHH
Q 000811 900 SVEEDDL-AGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPNKKRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRA 975 (1272)
Q Consensus 900 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~e---~~~l~v~GF~~~~rr 975 (1272)
.....-+ ..+.+... .+-.+|.. +..........||+.+| ++.++.+||++|++|
T Consensus 743 ~~d~qf~p~~L~el~~-kei~~~~k--------------------~~e~~kin~~~~lt~ee~~~k~~ll~~gft~w~k~ 801 (971)
T KOG0385|consen 743 VQDFQFFPKRLFELLE-KEIEYYRK--------------------TIEQKKINNAEPLTQEEEEEKEELLSQGFTNWTKR 801 (971)
T ss_pred ccccccCcHHHHHHHH-HHHHHHHH--------------------HHHHHhccCCCCCCcHHHhhhhhhhhccccchhhh
Confidence 2100000 01110000 00001110 00111223456787664 679999999999999
Q ss_pred H---HHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHHHhhhhccCCCCCccCCCCCCcchhHHHHHHHHHHHHHH
Q 000811 976 A---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTHITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIR 1052 (1272)
Q Consensus 976 ~---Fv~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~lF~~~~~E~i~d~~~~~d~i~k~~~k~~~vl~ri~~~~ll~ 1052 (1272)
+ |++++.|||++++ +.|++++.+ |++||.+|+++||++|.| ++|+++++..|++|+.+++.. .-.+.+|.
T Consensus 802 df~~fi~a~eKygr~di--~~ia~~~e~-~~eev~~y~rvfwer~~e-l~d~ek~~~~ie~~e~~i~r~---~~~~~~ld 874 (971)
T KOG0385|consen 802 DFNQFIKANEKYGRDDI--ENIAAEVEG-TPEEVGEYARVFWERLEE-LSDIEKIIYQIERGEKRIQRG---DSIKKALD 874 (971)
T ss_pred hHHHHHHHhhccCcchh--hhhHHhhcC-CHHHHHHHHHHHHHHHHH-hhhhHHHHHHHhhhHhhhhHH---HHHHHHHh
Confidence 6 5677889999886 589999998 999999999999999996 999999999999998888774 45678999
Q ss_pred HHHHhccCCCCCCCccccccccccCCCCCCCcCHHHHHHHHHHHHhhccCc---hHHhhcC--------cccChhHHHHH
Q 000811 1053 DKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGYGR---WQAIVDD--------KDLKVQEVICQ 1121 (1272)
Q Consensus 1053 ~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~~i~~~Gyg~---we~Ik~D--------~~l~l~~~i~~ 1121 (1272)
.|+.+|. +| +++.+.|+.+ +++.|++++|+||+||+||+||++ |+.+++. ++|++.+++.+
T Consensus 875 ~k~~~~k-~p------~~l~i~~~~n-k~~~ys~~edrfL~~~l~K~g~~~~~~~e~lr~~~~~~~~frfdw~~~sRt~~ 946 (971)
T KOG0385|consen 875 DKIARYK-AP------HQLRIQYGTN-KGKNYSEEEDRFLECMLHKLGFDAENVYEELRQPIRNSPQFRFDWFIKSRTAM 946 (971)
T ss_pred hhHhhhc-Cc------hheeeeeccc-cCCCCchhhHHHHHHHHHHhccCchhHHHHHHHHHhcCcccccceeeehhhHH
Confidence 9999996 45 4578999765 889999999999999999999998 9887776 39999999999
Q ss_pred HhcCCCCCCCCC
Q 000811 1122 ELNLPFINLPVP 1133 (1272)
Q Consensus 1122 e~~~~~~~~~~~ 1133 (1272)
|++++|++++.-
T Consensus 947 el~Rr~ntli~~ 958 (971)
T KOG0385|consen 947 ELQRRCNTLITL 958 (971)
T ss_pred HHHhcCCeeEEe
Confidence 999999998764
No 3
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=3.7e-128 Score=1220.66 Aligned_cols=765 Identities=38% Similarity=0.625 Sum_probs=636.9
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC--CCCcEEEEecCccHHHHH
Q 000811 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1272)
Q Consensus 272 ~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--~~~p~LIVvP~sll~qW~ 349 (1272)
..+..+|.++. ++|||||++|++||+.++.++.+||||||||||||+|+|+++.++... ..+|+|||||.+++.||.
T Consensus 157 ~~l~~qP~~i~-~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~ 235 (1033)
T PLN03142 157 TRLLVQPSCIK-GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWM 235 (1033)
T ss_pred ceeccCChHhc-cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHH
Confidence 44667899998 799999999999999999999999999999999999999999998753 346999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcc
Q 000811 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1272)
Q Consensus 350 ~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w 429 (1272)
+||.+|+|.+++++|+|+...|..+....+ ...+|+|+||||+++.++...|..+.|
T Consensus 236 ~Ei~kw~p~l~v~~~~G~~~eR~~~~~~~~-----------------------~~~~~dVvITSYe~l~~e~~~L~k~~W 292 (1033)
T PLN03142 236 NEIRRFCPVLRAVKFHGNPEERAHQREELL-----------------------VAGKFDVCVTSFEMAIKEKTALKRFSW 292 (1033)
T ss_pred HHHHHHCCCCceEEEeCCHHHHHHHHHHHh-----------------------cccCCCcceecHHHHHHHHHHhccCCC
Confidence 999999999999999999988876655322 124689999999999999999999999
Q ss_pred eeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---hhHHHHH
Q 000811 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---NQEEQIS 506 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~---~~~~~i~ 506 (1272)
++|||||||+|||..|+++++++.+.+.+||+|||||+||++.|||+||+||.|+.|++...|..+|... .....+.
T Consensus 293 ~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~ 372 (1033)
T PLN03142 293 RYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQ 372 (1033)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999642 3456788
Q ss_pred HHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000811 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1272)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~ 586 (1272)
.|+.+|+||++||+|.+|...|||+.+.+++|.||+.|+++|+.++.+....++.. +....+++++|+||+||+||||+
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g-~~~~~LlnilmqLRk~cnHP~L~ 451 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAG-GERKRLLNIAMQLRKCCNHPYLF 451 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhCCHHhh
Confidence 99999999999999999999999999999999999999999999999888777653 45567899999999999999999
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 000811 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1272)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~ 666 (1272)
.+.++...... ...++..|+|+.+|+++|..+...|+||||||||+.++++|+++|..+|+.|++|||+++..+|+.+
T Consensus 452 ~~~ep~~~~~~--~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~ 529 (1033)
T PLN03142 452 QGAEPGPPYTT--GEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDAS 529 (1033)
T ss_pred hcccccCcccc--hhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 88776544332 3678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHH
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~ 746 (1272)
|++||++++..++|||||+|||+||||++||+||+||+||||+.++||+||||||||+++|.||||++++||||+|++++
T Consensus 530 Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera 609 (1033)
T PLN03142 530 IDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERA 609 (1033)
T ss_pred HHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcch---hccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhccCCCCccccCCC--Cc
Q 000811 747 KKKMVLEHLVVGRL---KAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQVGDEEASLD--DE 821 (1272)
Q Consensus 747 ~~K~~L~~~vig~~---~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~~~~~~~~~~--~~ 821 (1272)
.+|+.|+..|++.. ....+++++|.+|+++||+.+|+..+. .++|+|||.||+|++..+.+.... ..
T Consensus 610 ~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~~~f~~~~~--------~~~~~did~il~~~~~~~~~~~~~~~~~ 681 (1033)
T PLN03142 610 YKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAEMVFSSKDS--------TITDEDIDRIIAKGEEATAELDAKMKKF 681 (1033)
T ss_pred HHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChHHhhhccCC--------CCCHHHHHHHHHhcHHHHHHHHHHHHHh
Confidence 99999999999543 234689999999999999999965431 358999999999998766542210 00
Q ss_pred chhhHHhhhhhh----cccchhHHHHHHHHHHHHHHHhhcccCCCccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCccc
Q 000811 822 DEDGFLKAFKVA----NFEYIEEVEAAAEEEAQKLAAENKSSMSNSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQ 897 (1272)
Q Consensus 822 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 897 (1272)
..+. + .|++. -|++..+......+ -.|.+ .....++.++||.||.
T Consensus 682 ~~~~-~-~f~~~~~~~~~~~~g~~~~~~~~-------------------~~~~~----------~~~~~~~~~~~re~~~ 730 (1033)
T PLN03142 682 TEDA-I-KFKMDDTAELYDFDDEDDKDENK-------------------LDFKK----------IVSDNWIDPPKRERKR 730 (1033)
T ss_pred chhh-h-cccccCCcceeeecCccccchhh-------------------hhHhh----------hccccccccchhhhhc
Confidence 1111 1 23322 12221110000000 00000 0112355556666665
Q ss_pred ccccchhhcccccccCCCCcccccccccCCCCCCCCCCCCCCCCc-----------c-----------------------
Q 000811 898 MVSVEEDDLAGLEDVSSEGEDDNYEADLTDGDTTSSGTQPGRKPN-----------K----------------------- 943 (1272)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~----------------------- 943 (1272)
.+.. |.+|.+.+..+.. ..+..++.|+ .
T Consensus 731 ~~~~----------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~q~~~~~~l~~l~~~e~~~~~~~~~~~~~ 792 (1033)
T PLN03142 731 NYSE----------------SEYFKQAMRQGAP--AKPKEPRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAHQKGQL 792 (1033)
T ss_pred ccch----------------hHHHHHHHhcCCc--ccCCCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHhccccCCch
Confidence 4321 1233322221110 0001111000 0
Q ss_pred ---cccccCCCCCCCCcccc---ccchhccCCChHHHHH---HHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHH
Q 000811 944 ---KRSRVDSMEPPPLMEGE---GRSFRVLGFSQNQRAA---FVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1272)
Q Consensus 944 ---~~~~~~~~~~~pl~~~e---~~~l~v~GF~~~~rr~---Fv~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~lF~ 1014 (1272)
.......++..|||++| +++|+.+||++|+||+ |+++|.||||.++ ..||.++.+||++||++|+++||
T Consensus 793 ~~~~~~~~~~~~~~~lt~~e~~~k~~l~~~gf~~w~~~~f~~f~~~~~~~gr~~~--~~i~~~~~~k~~~ev~~y~~~f~ 870 (1033)
T PLN03142 793 KDTIDVAEPEEPGDPLTAEEQEEKEQLLEEGFSTWSRRDFNAFIRACEKYGRNDI--KSIASEMEGKTEEEVERYAKVFW 870 (1033)
T ss_pred hhhhhhccccccCCCCCHHHHHHHHHHHhcCcCcccHHHHHHHHHHHHHhCHhHH--HHHHHHhcCCCHHHHHHHHHHHH
Confidence 00011234467899887 5799999999999996 6888999999876 58999999999999999999999
Q ss_pred HhhhhccCCCCCccCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCcCHHHHHHHHH
Q 000811 1015 THITEDITDSPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLR 1094 (1272)
Q Consensus 1015 ~~~~E~i~d~~~~~d~i~k~~~k~~~vl~ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~ 1094 (1272)
+||.| ++||++++..|++|+.++++. .....+|++||+.|. +| + .++.++|+ .++++.|++++||||||
T Consensus 871 ~~~~~-~~~~~~~~~~ie~~e~~~~~~---~~~~~~~~~k~~~~~-~p---~--~~l~~~~~-~~~~~~~~~~~d~~~~~ 939 (1033)
T PLN03142 871 ERYKE-LNDYDRIIKNIERGEARISRK---DEIMKAIGKKLDRYK-NP---W--LELKIQYG-QNKGKLYNEECDRFMLC 939 (1033)
T ss_pred Hhhhh-hccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-Cc---H--HHceeecC-CCCCCcCCHHHHHHHHH
Confidence 99996 999999999999999887663 456799999999997 66 5 56889996 56789999999999999
Q ss_pred HHHhhccCchHHhhcCc--------ccChhHHHHHHhcCCCCCCCCC
Q 000811 1095 AVLKHGYGRWQAIVDDK--------DLKVQEVICQELNLPFINLPVP 1133 (1272)
Q Consensus 1095 ~i~~~Gyg~we~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~~ 1133 (1272)
++|+||||+|+.|+.+. +|+++++..+||++||.+|+..
T Consensus 940 ~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 940 MVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred HHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 99999999999998773 9999999999999999998753
No 4
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.6e-97 Score=883.20 Aligned_cols=506 Identities=44% Similarity=0.727 Sum_probs=447.1
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC--CCCcEEEEecCccHHHHH
Q 000811 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWE 349 (1272)
Q Consensus 272 ~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--~~~p~LIVvP~sll~qW~ 349 (1272)
.....||..+.||+|++||+.||.||..++.++-+||||||||||||+|+|+++.||.+. ..||+|||||+|+|.||.
T Consensus 381 E~v~~Qps~l~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~ 460 (1157)
T KOG0386|consen 381 ENVAKQPSSLQGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWS 460 (1157)
T ss_pred hccccCcchhcCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCch
Confidence 456789999999999999999999999999999999999999999999999999999874 357999999999999999
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcc
Q 000811 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1272)
Q Consensus 350 ~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w 429 (1272)
.||.+|+|.+..+.|.|++..|..+..- ....+|+|++|||+.+.++.+.|.+|.|
T Consensus 461 ~Ef~kWaPSv~~i~YkGtp~~R~~l~~q------------------------ir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 461 SEFPKWAPSVQKIQYKGTPQQRSGLTKQ------------------------QRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred hhccccccceeeeeeeCCHHHHhhHHHH------------------------HhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 9999999999999999999999866542 1237999999999999999999999999
Q ss_pred eeEEeccccccCCcchHHHHHHH-hcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------
Q 000811 430 QCMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI--------- 499 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~-~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~--------- 499 (1272)
.++||||+||+||..+++...+. .+.+.+||||||||+||++.|||+||+|+.|.+|.+...|.+||...
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 67899999999999999999999999999999999999999999632
Q ss_pred -hhH---HHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHH--hcCCchhhHHHHH
Q 000811 500 -NQE---EQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILT--RRGGAQISLINVV 573 (1272)
Q Consensus 500 -~~~---~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~--~~~~~~~~l~~~l 573 (1272)
..+ -.+.+||++|+||+|||.|++|+..||.|++.++.|.||..|+.+|+.+.....-... ++.+...++.|.+
T Consensus 597 LteEEtlLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~i 676 (1157)
T KOG0386|consen 597 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTI 676 (1157)
T ss_pred ccchHHHHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHh
Confidence 112 2478999999999999999999999999999999999999999999998754332222 2445567899999
Q ss_pred HHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEE
Q 000811 574 MELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYER 653 (1272)
Q Consensus 574 ~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~r 653 (1272)
|+|||||||||++..++......... ..|+..|||+.+|+++|++|++.|||||.|+||++++++|++||..+++.|.|
T Consensus 677 mqLRKiCNHP~lf~~ve~~~~~~~~~-~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlR 755 (1157)
T KOG0386|consen 677 MQLRKLCNHPYLFANVENSYTLHYDI-KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLR 755 (1157)
T ss_pred HHHHHhcCCchhhhhhccccccccCh-hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheee
Confidence 99999999999998876654433322 68999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEe
Q 000811 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLI 733 (1272)
Q Consensus 654 idG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrli 733 (1272)
+||+|..++|-..++.||.|++..|+||+||+|||+|+||++||||||||+||||+.++||.+|||||||++.|+|+|++
T Consensus 756 LDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~ 835 (1157)
T KOG0386|consen 756 LDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLI 835 (1157)
T ss_pred ecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhc--chhccCCCHHHHHHHHHhchhhhccccccCCCCccccCCCHHHHHHHhccCC
Q 000811 734 TRGSIEERMMQMTKKKMVLEHLVVG--RLKAQNINQEELDDIIRYGSKELFADENDEGGKSRQIHYDDAAIDRLLDRDQ 810 (1272)
Q Consensus 734 t~~TvEE~I~~~~~~K~~L~~~vig--~~~~~~~~~~el~~ll~~ga~~lf~~~~~~~~~~~~~~~~~~~id~~l~r~~ 810 (1272)
+.++|||+|+..|..|+..+..|+. ..+. +-+.++=..+|. .+...++++.+ .-.-+++.|..+|.|++
T Consensus 836 tv~sveE~il~~a~~Kl~~d~kviqag~fdn-~st~~eR~~~Le----~~l~~~~~~~~---~~v~~~~~ln~~larse 906 (1157)
T KOG0386|consen 836 TVNSVEEKILAEAFYKLDVDGKVIQAGKFDN-KSTAEEREMFLE----QLLEMEGDEEE---EEVPDDEVLNSMLARSE 906 (1157)
T ss_pred hhhHHHHHHHHHHHHhcCchHhhhhcccccC-CCcHHHHHHHHH----HHHhCCCcccc---ccCCcHHHHHHHHhcch
Confidence 9999999999999999999999994 3333 333344333332 23333332221 11236777999998875
No 5
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4.7e-94 Score=840.93 Aligned_cols=464 Identities=44% Similarity=0.673 Sum_probs=407.1
Q ss_pred ccCCCCCC-CCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCccHHHHHHH
Q 000811 274 YEHSPEFL-SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 274 ~~~~P~~~-~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E 351 (1272)
...||..+ ++.+|+|||+-|||||.-.+.++-+||||||||||||+|+|||+++|++.+ .||+|||||.||+.||.+|
T Consensus 387 ~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrE 466 (941)
T KOG0389|consen 387 ITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLRE 466 (941)
T ss_pred cccCccccCCCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHH
Confidence 34477766 567999999999999999999999999999999999999999999999865 5799999999999999999
Q ss_pred HHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhhccCCCc
Q 000811 352 FATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIK 428 (1272)
Q Consensus 352 ~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~---d~~~L~~~~ 428 (1272)
|++|||.+.|..|+|+..+|..++..-. .....|||+||||..+.. |+.+|+..+
T Consensus 467 f~kwCPsl~Ve~YyGSq~ER~~lR~~i~----------------------~~~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 467 FAKWCPSLKVEPYYGSQDERRELRERIK----------------------KNKDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred HHHhCCceEEEeccCcHHHHHHHHHHHh----------------------ccCCCccEEEEEeecccCChHHHHHHHhcc
Confidence 9999999999999999999998886411 123589999999999854 678899999
Q ss_pred ceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCC-hHHHHHHHhhhh-------
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS-LEEFQEEFKDIN------- 500 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~-~~~F~~~f~~~~------- 500 (1272)
|+++|.||+|.|||..|.+++.|..+++++||||||||+|||+.||++||.|+.|..|.+ .+++...|....
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e 604 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIE 604 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhh
Confidence 999999999999999999999999999999999999999999999999999999999974 466776665322
Q ss_pred ----hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHH
Q 000811 501 ----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVM 574 (1272)
Q Consensus 501 ----~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~l~ 574 (1272)
..+.+.+-..+++||+|||.|++|+++||||..++.+|+|+..|+++|..+++.....++....+ ..+ .+++|
T Consensus 605 ~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~-~~vlm 683 (941)
T KOG0389|consen 605 NALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKS-GNVLM 683 (941)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhcccccccccccc-chHHH
Confidence 13568899999999999999999999999999999999999999999999988763333322222 112 57999
Q ss_pred HHHHHhCCcccccCCCCC---------------cccch-----H--------HHH----------------HHHhhhhHH
Q 000811 575 ELRKLCCHPYMLEGVEPD---------------IEDTN-----E--------SFK----------------QLLESSGKL 610 (1272)
Q Consensus 575 ~Lrk~c~hP~L~~~~e~~---------------~~~~~-----~--------~~~----------------~li~~S~Kl 610 (1272)
+|||++|||-|+.....+ ....+ + .+. .++-.|||.
T Consensus 684 qlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~ 763 (941)
T KOG0389|consen 684 QLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKC 763 (941)
T ss_pred HHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhH
Confidence 999999999987432211 00000 0 001 123469999
Q ss_pred HHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccc
Q 000811 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1272)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~G 690 (1272)
..|.+||+++++.|+||||||||+.|||||+-+|...++.|+|+||+|....||.+|+.||.+. ..|||||||+|||.|
T Consensus 764 r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~-difVFLLSTKAGG~G 842 (941)
T KOG0389|consen 764 RKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDK-DIFVFLLSTKAGGFG 842 (941)
T ss_pred hHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCC-ceEEEEEeeccCcce
Confidence 9999999999999999999999999999999999999999999999999999999999999854 578999999999999
Q ss_pred cCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchh
Q 000811 691 INLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK 761 (1272)
Q Consensus 691 INL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~ 761 (1272)
|||++||+|||+|.++||..|.||.+||||+||+|+|+|||||+++||||.|+++|++|+.|+..+.+..+
T Consensus 843 INLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k 913 (941)
T KOG0389|consen 843 INLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGK 913 (941)
T ss_pred ecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999975543
No 6
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=3.8e-93 Score=845.59 Aligned_cols=472 Identities=40% Similarity=0.709 Sum_probs=419.6
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC--CCCcEEEEecCccHHHHHHHHHHHCC
Q 000811 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPLSTLRNWEREFATWAP 357 (1272)
Q Consensus 280 ~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--~~~p~LIVvP~sll~qW~~E~~~~~p 357 (1272)
++-.|+||+||..|++||..+|.++-|||||||||||||||+|+++++|..+ +.||+|||||++++.||.-||++|+|
T Consensus 610 sLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElKRwcP 689 (1958)
T KOG0391|consen 610 SLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHhhhCC
Confidence 3335899999999999999999999999999999999999999999999763 56899999999999999999999999
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccc
Q 000811 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEa 437 (1272)
.++++.|+|+...|+.-++- |. ....|||+||||..+..+...|+...|.|+|+|||
T Consensus 690 glKILTYyGs~kErkeKRqg-W~----------------------kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEa 746 (1958)
T KOG0391|consen 690 GLKILTYYGSHKERKEKRQG-WA----------------------KPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEA 746 (1958)
T ss_pred cceEeeecCCHHHHHHHhhc-cc----------------------CCCeeEEeehhhHHHHhHHHHHHhhccceeehhhh
Confidence 99999999999998765442 11 23579999999999999999999999999999999
Q ss_pred cccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh----------hHHHHHH
Q 000811 438 HRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN----------QEEQISR 507 (1272)
Q Consensus 438 HrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~----------~~~~i~~ 507 (1272)
|+|||..|+.+++|.+|++.+||||||||+||++.|||+||+||+|..|.+...|..||.+.. ....+.+
T Consensus 747 qnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~R 826 (1958)
T KOG0391|consen 747 QNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIR 826 (1958)
T ss_pred hhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999997521 2467899
Q ss_pred HHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000811 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1272)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~ 587 (1272)
||++|+||+|||+|.||+++||.|.|++|+|.||..|+.+|+.++.+.-..-+-..|+..+.+|++|+||||||||.||+
T Consensus 827 LHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhfmsVlnilmqLrKvCNHPnLfE 906 (1958)
T KOG0391|consen 827 LHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHFMSVLNILMQLRKVCNHPNLFE 906 (1958)
T ss_pred HHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCchhHHHHHHHHHHHHcCCCCcCC
Confidence 99999999999999999999999999999999999999999999887655555567788899999999999999998762
Q ss_pred CCC-----------------------------C---------------Cc------------------cc----------
Q 000811 588 GVE-----------------------------P---------------DI------------------ED---------- 595 (1272)
Q Consensus 588 ~~e-----------------------------~---------------~~------------------~~---------- 595 (1272)
.-- + .. ..
T Consensus 907 pRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sAspl~s~l~~ls~~~rPp~pt~ 986 (1958)
T KOG0391|consen 907 PRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSASPLASALPQLSLRGRPPIPTF 986 (1958)
T ss_pred CCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcccccccccccccCCCCCCCccc
Confidence 100 0 00 00
Q ss_pred ----------------chH-------------------------------------------------------------
Q 000811 596 ----------------TNE------------------------------------------------------------- 598 (1272)
Q Consensus 596 ----------------~~~------------------------------------------------------------- 598 (1272)
..+
T Consensus 987 ~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~htt~~~p~~~~~svl~~~sv~ 1066 (1958)
T KOG0391|consen 987 AGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQHTTAGQPLQLQGSVLQIVSVP 1066 (1958)
T ss_pred cccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeeeeecccCccccccceeeecccc
Confidence 000
Q ss_pred -----------------------------------------------------------------------HHH------
Q 000811 599 -----------------------------------------------------------------------SFK------ 601 (1272)
Q Consensus 599 -----------------------------------------------------------------------~~~------ 601 (1272)
.+.
T Consensus 1067 t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~klee~Rkrql~erl~ri~~~~ 1146 (1958)
T KOG0391|consen 1067 TQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGGKLEEERKRQLKERLDRIYLVN 1146 (1958)
T ss_pred ccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCccccccchhhHHHHHHHHHHHHHhhcc
Confidence 000
Q ss_pred ------------------------------------------HHH-----------------------------------
Q 000811 602 ------------------------------------------QLL----------------------------------- 604 (1272)
Q Consensus 602 ------------------------------------------~li----------------------------------- 604 (1272)
.+|
T Consensus 1147 APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~ppslra~~ppp~~~~r~r~~~~ 1226 (1958)
T KOG0391|consen 1147 APVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAPPSLRAPRPPPLYSHRMRILRQ 1226 (1958)
T ss_pred CcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCChhhcCCCCCcccchHHHHHHH
Confidence 000
Q ss_pred ------------------------------hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEE
Q 000811 605 ------------------------------ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERI 654 (1272)
Q Consensus 605 ------------------------------~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ri 654 (1272)
..+||++.|.-||+.|+..|||||||+||+.|||+|+.||+++||-|.||
T Consensus 1227 qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RL 1306 (1958)
T KOG0391|consen 1227 QLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRL 1306 (1958)
T ss_pred HHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEe
Confidence 02789999999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000811 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1272)
Q Consensus 655 dG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit 734 (1272)
||+++.++||.++.+||+ +...|||+||||+||+||||+.||||||||+||||..|.||++|||||||++.|+|||||+
T Consensus 1307 Dg~t~vEqRQaLmerFNa-D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLIS 1385 (1958)
T KOG0391|consen 1307 DGNTSVEQRQALMERFNA-DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLIS 1385 (1958)
T ss_pred cCCccHHHHHHHHHHhcC-CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeec
Confidence 999999999999999998 6678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcch--hccCCCHHHHHHHHH
Q 000811 735 RGSIEERMMQMTKKKMVLEHLVVGRL--KAQNINQEELDDIIR 775 (1272)
Q Consensus 735 ~~TvEE~I~~~~~~K~~L~~~vig~~--~~~~~~~~el~~ll~ 775 (1272)
+.||||.|+.++.+|..|+.+++++. ...-+.+.++.+||.
T Consensus 1386 e~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd 1428 (1958)
T KOG0391|consen 1386 ERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFD 1428 (1958)
T ss_pred cchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhc
Confidence 99999999999999999999999443 444566677777654
No 7
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1e-91 Score=804.36 Aligned_cols=458 Identities=45% Similarity=0.752 Sum_probs=411.8
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC--CCcEEEEecCccHHHHHH
Q 000811 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNWER 350 (1272)
Q Consensus 273 ~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~--~~p~LIVvP~sll~qW~~ 350 (1272)
..-.||..+. ++|+.||+.|+|||..++.+|.+||||||||||||+|+|+++++|.+.. .||||||+|.|+|.||..
T Consensus 556 ~tV~qPkil~-ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 556 RTVPQPKILK-CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeccCchhhh-hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 3456888887 8999999999999999999999999999999999999999999999753 579999999999999999
Q ss_pred HHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcce
Q 000811 351 EFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQ 430 (1272)
Q Consensus 351 E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~ 430 (1272)
||.+|+|.++++.|.|+...|.+++.+- ... +. -.....|||+||||+++..|...|++++|.
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw--~rK---nm------------Y~rna~fhVviTSYQlvVtDeky~qkvKWQ 697 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFW--NRK---NM------------YRRNAPFHVVITSYQLVVTDEKYLQKVKWQ 697 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhc--chh---hh------------hccCCCceEEEEeeeeeechHHHHHhhhhh
Confidence 9999999999999999999999988741 111 11 113468999999999999999999999999
Q ss_pred eEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh----------hh
Q 000811 431 CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD----------IN 500 (1272)
Q Consensus 431 ~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~----------~~ 500 (1272)
++|+|||+-||+..|..++.|..|++++||||||||+||+..|||+||+|++|..|.+..+|.+||.. ..
T Consensus 698 YMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tl 777 (1185)
T KOG0388|consen 698 YMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTL 777 (1185)
T ss_pred heehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999963 12
Q ss_pred hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000811 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1272)
Q Consensus 501 ~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c 580 (1272)
++.++.+||.+|+||||||.|+||...|..|.++.|+|.||..|+.+|+.|..+... ..+.+++|+|||+|
T Consensus 778 neqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~---------~E~~~~vmQlrKVC 848 (1185)
T KOG0388|consen 778 NEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISS---------MEMENLVMQLRKVC 848 (1185)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhH---------HHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999999999999998766432 22346999999999
Q ss_pred CCcccccCCCCCcc-------------------------c----------------------------------------
Q 000811 581 CHPYMLEGVEPDIE-------------------------D---------------------------------------- 595 (1272)
Q Consensus 581 ~hP~L~~~~e~~~~-------------------------~---------------------------------------- 595 (1272)
|||-||+..++... .
T Consensus 849 NHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l 928 (1185)
T KOG0388|consen 849 NHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRL 928 (1185)
T ss_pred CChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccc
Confidence 99988754332100 0
Q ss_pred -------------ch------------------HH---------------------------------------------
Q 000811 596 -------------TN------------------ES--------------------------------------------- 599 (1272)
Q Consensus 596 -------------~~------------------~~--------------------------------------------- 599 (1272)
.. +.
T Consensus 929 ~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~ 1008 (1185)
T KOG0388|consen 929 SLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRH 1008 (1185)
T ss_pred eeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccC
Confidence 00 00
Q ss_pred -----------HHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 600 -----------FKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 600 -----------~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
....+..|||+..|+.+|.+|++.|||||+|.||+.|+|+|++||..+||.|.|+||+....+|..+|.
T Consensus 1009 ~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vr 1088 (1185)
T KOG0388|consen 1009 IPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVR 1088 (1185)
T ss_pred cccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHh
Confidence 001133589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHH
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~ 748 (1272)
+|++ ++.|||||||||||+||||++||||||||+||||..+.||++||||.||++.|+||||++++||||+|++++.+
T Consensus 1089 DwQ~--sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTvEEk~l~rA~q 1166 (1185)
T KOG0388|consen 1089 DWQA--SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTVEEKVLERANQ 1166 (1185)
T ss_pred hccC--CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccHHHHHHHHhhh
Confidence 9997 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcc
Q 000811 749 KMVLEHLVVGR 759 (1272)
Q Consensus 749 K~~L~~~vig~ 759 (1272)
|....++|+.+
T Consensus 1167 K~~vQq~Vm~G 1177 (1185)
T KOG0388|consen 1167 KDEVQQMVMHG 1177 (1185)
T ss_pred HHHHHHHHHcC
Confidence 99999999843
No 8
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=9.6e-93 Score=852.83 Aligned_cols=625 Identities=51% Similarity=0.844 Sum_probs=542.1
Q ss_pred ccccccccccccCCCCceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCc--ccccccccccccCccC-C--C-C
Q 000811 46 RIDAKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN--DIDKILDCEMRPTVAG-D--S-D 119 (1272)
Q Consensus 46 ~~~~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~--~iekil~~R~rp~~~~-~--~-~ 119 (1272)
..+.+...|.+|+++|.+++|++|+.+||.+|+.||+...|.++|.|+.|.++.+ .+.+|+.|+++|+... . . .
T Consensus 42 ~~~~~~e~c~ic~~~g~~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~~~k~~~il~~~~~~~~~~~~~~~~~ 121 (696)
T KOG0383|consen 42 WDDAEQEACRICADGGELLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKNAGKIEKILGWRWKPTPKPREGNQGV 121 (696)
T ss_pred cchhhhhhhhhhcCCCcEEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCCcccccccceeEecCCCCccccCcCc
Confidence 3466778999999999999999999999999999999999998899999987765 7999999999998754 1 1 1
Q ss_pred cccccchhhhhHHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHHhhhhhcccC--------C-----C-C--chh
Q 000811 120 VSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMSSN--------N-----N-A--EED 183 (1272)
Q Consensus 120 ~~~~~~~~~~~~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~~f~k~~~~~--------~-----~-~--~ed 183 (1272)
...........++|+|||+|.||+||.|+++.++.......+. -+..++...... . . . ++.
T Consensus 122 ~~~~~~~~~~~re~~vk~qg~s~~~c~~~~e~~~q~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~k~~~~a~~~~r 198 (696)
T KOG0383|consen 122 ISPRRSNGIVEREFFVKWQGLSYWHCSWKSELLLQNPLNTLPV---ELQRKHDTDQKPEAEIGVTRDKGKLVPYADLEER 198 (696)
T ss_pred cCCcccccchhhhcccccccCCccchhHHHHHHhhhhcccchH---hhhhhhhcccCccccccccccCccccccccchhh
Confidence 1222344556799999999999999999999988765432221 122221111110 0 0 0 111
Q ss_pred --hccCCCCccchhhhhhhc-cCCCcceEEeeccccccccccccccc-ccccchHHHHHHHHHhhcccccccCcCCCCCc
Q 000811 184 --FVAIRPEWTTVDRILACR-GEDDEKEYLVKYKELSYDECYWEYES-DISAFQPEIERFIKIQSRSHRSSCNKQKSSPQ 259 (1272)
Q Consensus 184 --~~~~~~~~~~veRIi~~r-~~~~~~eyLVKWkgL~Y~~~tWE~~~-~~~~~~~~i~~f~~~~~~~~~~~~~~~~~~~~ 259 (1272)
...+.|+|..+.||+.++ ...+...|+|||+.|+|++++|+.+. ++..++..+++|....... ...+..
T Consensus 199 ~~~~~iKpe~~~i~rii~~~~s~~~~~~~~Vk~k~l~~d~~~~e~~~~~ip~~~~~~qe~~~~~~~~---~~~k~~---- 271 (696)
T KOG0383|consen 199 FLLYGIKPEWMPIARIINRRSSQKGATDYLVKWKELSYDEQEWEVEDPDIPGYSSAGQEAWHHREKP---TVSKDL---- 271 (696)
T ss_pred hhheeccccccccchhhhhhcccccceeeEeeeccCCccccCCCcCCCCcccCcccccccccccCcc---cccccc----
Confidence 245789999999999999 55678899999999999999999887 7788888888887654431 110000
Q ss_pred ccccccCCCcccccccCCCCCCC--CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC--CCc
Q 000811 260 DVTESTKKPKEFQQYEHSPEFLS--GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISP 335 (1272)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~P~~~~--g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~--~~p 335 (1272)
. .........+..+|.++. ++.|++||.+|+||++..|..+..+|||||||+|||++++.|+..+.... .+|
T Consensus 272 ---~-~~~~~~~v~~~~qP~~l~~~~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P 347 (696)
T KOG0383|consen 272 ---K-SNTVDDPVPYEDQPQFLTEPGGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGP 347 (696)
T ss_pred ---c-ccccCCCCCcccCCccccCCCccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCC
Confidence 0 012345667888999986 59999999999999999999999999999999999999999999998864 359
Q ss_pred EEEEecCccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHH
Q 000811 336 HLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYE 415 (1272)
Q Consensus 336 ~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye 415 (1272)
+||++|.+++.+|.+|+..|+|.+.++.|+|+...|.+++++++.+.+...+.. ............+|+|.+++|+
T Consensus 348 ~Lv~ap~sT~~nwe~e~~~wap~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~----~~i~~~~~~s~~k~~vl~~s~~ 423 (696)
T KOG0383|consen 348 PLVVAPLSTIVNWEREFELWAPSFYVVPYPGTAKSRAIIREPEFSFEDSSIKSS----PKISEMKTESSAKFHVLLPSYE 423 (696)
T ss_pred ceeeccCccccCCCCchhccCCCcccccCCCCccchhhhhcccccccccccccC----CccccccchhhcccccCCCchh
Confidence 999999999999999999999999999999999999999999998877653322 2223333455689999999999
Q ss_pred HHHhhhhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHH
Q 000811 416 MINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEE 495 (1272)
Q Consensus 416 ~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~ 495 (1272)
++..+...+..+.|.++|+||+||+||..|+++..+......++++|||||+|||+.|||++|+||.|..|++...|.+.
T Consensus 424 ~~~~~~~il~~v~w~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~ 503 (696)
T KOG0383|consen 424 TIEIDQSILFSVQWGLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEE 503 (696)
T ss_pred hcccCHHHHhhhhcceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000811 496 FKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1272)
Q Consensus 496 f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~ 575 (1272)
|.++..++.+..||.++.|+|+||.|.||++.+|+|.+.+++++|++.|+++|+.++++++..+.. ++...+++|++|+
T Consensus 504 ~~d~~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~-~~~~~s~~n~~me 582 (696)
T KOG0383|consen 504 FHDISCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA-GVHQYSLLNIVME 582 (696)
T ss_pred cchhhHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh-cchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987 6778899999999
Q ss_pred HHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEe
Q 000811 576 LRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERID 655 (1272)
Q Consensus 576 Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~rid 655 (1272)
|||+|+|||+++..++...........++.+|+|+.+|.+|+++++..|||||||+||+.+||+|+++|...+ .|.|||
T Consensus 583 l~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~d 661 (696)
T KOG0383|consen 583 LRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERID 661 (696)
T ss_pred HHHhhcCcccCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-cceecc
Confidence 9999999999999666666666677889999999999999999999999999999999999999999999999 999999
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEEeeccccccc
Q 000811 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLG 690 (1272)
Q Consensus 656 G~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~G 690 (1272)
|..+..+||.+|++||++++..||||+||||||+|
T Consensus 662 G~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 662 GPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 99999999999999999999999999999999998
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.9e-89 Score=803.79 Aligned_cols=490 Identities=37% Similarity=0.632 Sum_probs=416.2
Q ss_pred cccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC--CCcEEEEecCccHHHH
Q 000811 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW 348 (1272)
Q Consensus 271 ~~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~--~~p~LIVvP~sll~qW 348 (1272)
+...-..|.++. ..|+|||.+||+||..+++++.||||+||||||||||+|+||+.|...+ .+|.|||||.+++.||
T Consensus 192 ~~~~~~vPg~I~-~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW 270 (923)
T KOG0387|consen 192 LEGGFKVPGFIW-SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQW 270 (923)
T ss_pred ccccccccHHHH-HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHH
Confidence 333334565554 5799999999999999999999999999999999999999999998763 4699999999999999
Q ss_pred HHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCc
Q 000811 349 EREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIK 428 (1272)
Q Consensus 349 ~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~ 428 (1272)
.+||++|+|.++|.+|||+...-. ++.+... .+.... ........-+|+||||+.+......+..+.
T Consensus 271 ~~E~~~w~p~~rv~ilh~t~s~~r----~~~~~~~-------~~~~~~--L~r~~~~~~~ilitty~~~r~~~d~l~~~~ 337 (923)
T KOG0387|consen 271 MKEFQTWWPPFRVFILHGTGSGAR----YDASHSS-------HKKDKL--LIRKVATDGGILITTYDGFRIQGDDLLGIL 337 (923)
T ss_pred HHHHHHhCcceEEEEEecCCcccc----cccchhh-------hhhhhh--heeeecccCcEEEEehhhhcccCccccccc
Confidence 999999999999999999876311 0000000 000000 001122456799999999999999999999
Q ss_pred ceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI--------- 499 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~--------- 499 (1272)
|+++|+||+|+|+|++|+++.+++.+++.+|++|||||+|||+.|||+|+.|+.|+.+++...|.+.|...
T Consensus 338 W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNA 417 (923)
T KOG0387|consen 338 WDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANA 417 (923)
T ss_pred ccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999532
Q ss_pred ------hhHHHHHHHHHHhhhhhHHHHHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHH--HHHHhcCCchhhHH
Q 000811 500 ------NQEEQISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNY--QILTRRGGAQISLI 570 (1272)
Q Consensus 500 ------~~~~~i~~L~~~L~p~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~--~~l~~~~~~~~~l~ 570 (1272)
........|+.+|.||+|||+|+||.. .||.|.+++|+|.||+.|+.+|..++.... .+++. ....+
T Consensus 418 s~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng----~~~~l 493 (923)
T KOG0387|consen 418 SPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNG----KRNCL 493 (923)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcC----Cccce
Confidence 123445679999999999999999999 999999999999999999999999986532 22221 22334
Q ss_pred HHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH-hCCC
Q 000811 571 NVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT-FKKW 649 (1272)
Q Consensus 571 ~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~-~~g~ 649 (1272)
..+.-||++||||-|+..-..... ........+..||||.+|.++|...+.+|+|||+|||...|||+|+.+|. ..||
T Consensus 494 ~Gi~iLrkICnHPdll~~~~~~~~-~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~y 572 (923)
T KOG0387|consen 494 SGIDILRKICNHPDLLDRRDEDEK-QGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGY 572 (923)
T ss_pred echHHHHhhcCCcccccCcccccc-cCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCc
Confidence 445669999999999976321110 01111245778999999999999999999999999999999999999999 7999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 650 QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 650 ~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
+|+|+||.|+...|+.+|++||++.+ .+||||+|++||+|+||+.||.||||||+|||+.|.||..||+||||++.|.|
T Consensus 573 sylRmDGtT~~~~R~~lVd~Fne~~s-~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 573 SYLRMDGTTPAALRQKLVDRFNEDES-IFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred eEEEecCCCccchhhHHHHhhcCCCc-eEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEE
Confidence 99999999999999999999998554 57899999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCHHHHHHHHHHHHHHHHHHHh-cchhccCCCHHHHHHHHHhchhh
Q 000811 730 FRLITRGSIEERMMQMTKKKMVLEHLVV-GRLKAQNINQEELDDIIRYGSKE 780 (1272)
Q Consensus 730 yrlit~~TvEE~I~~~~~~K~~L~~~vi-g~~~~~~~~~~el~~ll~~ga~~ 780 (1272)
|||++.|||||+||.++--|..|.+.++ +.....-+...+|.+++.++...
T Consensus 652 YRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~G 703 (923)
T KOG0387|consen 652 YRLMTAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDFG 703 (923)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCCC
Confidence 9999999999999999999999999888 44455667888999999877543
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=5.8e-83 Score=770.52 Aligned_cols=465 Identities=38% Similarity=0.625 Sum_probs=403.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC--------CCCcEEEEecCccHHHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--------RISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--------~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
.+||.||.+|||||.++..-+-+|||||+||||||+|+|++++.=... ..-|.|||||.++..+|+.|+.+|
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHHHHHHHHh
Confidence 579999999999999999999999999999999999999998753322 234899999999999999999999
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEec
Q 000811 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1272)
Q Consensus 356 ~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvD 435 (1272)
+|-++|+.|+|....|..++.. -.+.+|+||||+.+++|...|.++.|.|+|+|
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q--------------------------~~~~~iiVtSYDv~RnD~d~l~~~~wNYcVLD 1107 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQ--------------------------YKNANIIVTSYDVVRNDVDYLIKIDWNYCVLD 1107 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhh--------------------------ccccceEEeeHHHHHHHHHHHHhcccceEEec
Confidence 9999999999999999877753 13568999999999999999999999999999
Q ss_pred cccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhh---------------h
Q 000811 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDI---------------N 500 (1272)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~---------------~ 500 (1272)
|+|-|||..++++++++++++.|||.|||||+|||+.|||+|++||+|+.+++...|.+.|... .
T Consensus 1108 EGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~Ea 1187 (1549)
T KOG0392|consen 1108 EGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEA 1187 (1549)
T ss_pred CcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999532 1
Q ss_pred hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh-------cCC-chhhHHHH
Q 000811 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTR-------RGG-AQISLINV 572 (1272)
Q Consensus 501 ~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~-------~~~-~~~~l~~~ 572 (1272)
..-.++.||+.+=|||+||+|+||+++||||..+-.+|+|++.|+++|+.+..+....... ..+ .....+..
T Consensus 1188 G~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqa 1267 (1549)
T KOG0392|consen 1188 GVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQA 1267 (1549)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHH
Confidence 1245788999999999999999999999999999999999999999999998873222111 111 14456788
Q ss_pred HHHHHHHhCCcccccCC-CCCcccchHH------HHHHHhhhhHHHHHHHHHHHHH--------------HcCceEEEEe
Q 000811 573 VMELRKLCCHPYMLEGV-EPDIEDTNES------FKQLLESSGKLQLLDKMMVKLK--------------EQGHRVLIYS 631 (1272)
Q Consensus 573 l~~Lrk~c~hP~L~~~~-e~~~~~~~~~------~~~li~~S~Kl~~L~klL~~l~--------------~~g~KVLIFs 631 (1272)
+.-|||.||||.|.-.. -++....... --+-+..|+|+.+|..+|...- -.+||+||||
T Consensus 1268 LqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFc 1347 (1549)
T KOG0392|consen 1268 LQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFC 1347 (1549)
T ss_pred HHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEee
Confidence 89999999999987543 2221111111 1123678999999999998752 1479999999
Q ss_pred cchhhHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCCh
Q 000811 632 QFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNP 708 (1272)
Q Consensus 632 q~~~~ldiL~~~L~~~---g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp 708 (1272)
|+..|+|++++-|-.. .+.|.|+||++++.+|++++.+||++++..+ +|++|.+||+|+|||+||||||++.||||
T Consensus 1348 QlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDv-LlLTThVGGLGLNLTGADTVVFvEHDWNP 1426 (1549)
T KOG0392|consen 1348 QLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDV-LLLTTHVGGLGLNLTGADTVVFVEHDWNP 1426 (1549)
T ss_pred eHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeE-EEEeeeccccccccCCCceEEEEecCCCc
Confidence 9999999999988543 5679999999999999999999999877654 99999999999999999999999999999
Q ss_pred hhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchhc--cCCCHHHHHHHHH
Q 000811 709 HADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--QNINQEELDDIIR 775 (1272)
Q Consensus 709 ~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~~--~~~~~~el~~ll~ 775 (1272)
.+|+|||+|||||||++.|+||||||+||+||+|+-.++-||..++.|++.-++ ..++-++|.+++.
T Consensus 1427 MrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1427 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999976432 4566677777654
No 11
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.3e-71 Score=668.93 Aligned_cols=453 Identities=35% Similarity=0.556 Sum_probs=381.9
Q ss_pred CCCcHHHHHHHHHHHHhhc------CCCceEEEeCCCChHHHHHHHHHHHHhhCCC------CcEEEEecCccHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERI------SPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~------~~~~~ILaDemGlGKTiqaia~l~~l~~~~~------~p~LIVvP~sll~qW~~E 351 (1272)
..|||||.+|++||..+.. ..+|||+||+||+|||+|+|+||+.++...+ ...|||||.+++.||.+|
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~sLv~nWkkE 316 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSSLVNNWKKE 316 (776)
T ss_pred hhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHHHHHHHHHH
Confidence 5799999999999977664 4468999999999999999999999987642 478999999999999999
Q ss_pred HHHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcc
Q 000811 352 FATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKW 429 (1272)
Q Consensus 352 ~~~~~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w 429 (1272)
|.+|.. .+....++|...+ ..+....+..-. ......-|++.||++++.....+....+
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~------------------~~~~~~~vli~sye~~~~~~~~il~~~~ 377 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLG------------------YKQFTTPVLIISYETASDYCRKILLIRP 377 (776)
T ss_pred HHHhccccccceeeeecccch-hhhhhHHHHHhh------------------hhheeEEEEeccHHHHHHHHHHHhcCCC
Confidence 999985 5777777777765 111111111000 0123456999999999999889999999
Q ss_pred eeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------
Q 000811 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN--------- 500 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~--------- 500 (1272)
++||+||+|++||..|.++++|..+.+.+|++|||||+||++.|+|++|+|..|+.+++...|...|....
T Consensus 378 glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s 457 (776)
T KOG0390|consen 378 GLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADAS 457 (776)
T ss_pred CeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999885321
Q ss_pred -----hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHH
Q 000811 501 -----QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVME 575 (1272)
Q Consensus 501 -----~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~ 575 (1272)
.++.+..|..+...|++||+-+...+.||++.+++|.|.+|+.|+.+|+.++... .. ....+ ..+..+..
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-~~~~~---~~l~~~~~ 532 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-RTLKG---YALELITK 532 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-hhhhc---chhhHHHH
Confidence 1344888999999999999999999999999999999999999999999998864 11 11111 15667788
Q ss_pred HHHHhCCcccccCCCC-----CcccchHHH--------HHHHhhhhHHHHHHHHHHHHHHcC-ceEEEEecchhhHHHHH
Q 000811 576 LRKLCCHPYMLEGVEP-----DIEDTNESF--------KQLLESSGKLQLLDKMMVKLKEQG-HRVLIYSQFQHMLDLLE 641 (1272)
Q Consensus 576 Lrk~c~hP~L~~~~e~-----~~~~~~~~~--------~~li~~S~Kl~~L~klL~~l~~~g-~KVLIFsq~~~~ldiL~ 641 (1272)
|+++|+||.|+...+. ......... ..-...|+|+..|..++....+.. .++++.|+++.++|+++
T Consensus 533 L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e 612 (776)
T KOG0390|consen 533 LKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFE 612 (776)
T ss_pred HHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHH
Confidence 9999999999852111 111111100 011224899999999997665543 56777778889999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhc
Q 000811 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1272)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRi 721 (1272)
..++.+|+.++|+||+++..+|+.+|+.||++.+..||||+|++|||+||||.+|++||+||++|||+++.|||+||+|.
T Consensus 613 ~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~Rd 692 (776)
T KOG0390|consen 613 QLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRD 692 (776)
T ss_pred HHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcch
Q 000811 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1272)
Q Consensus 722 GQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~ 760 (1272)
||+++|+||||++.||+||+|++++..|..|...|++..
T Consensus 693 GQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390|consen 693 GQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred CCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecc
Confidence 999999999999999999999999999999999998654
No 12
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=9.7e-68 Score=620.75 Aligned_cols=471 Identities=33% Similarity=0.521 Sum_probs=384.9
Q ss_pred CCCcHHHHHHHHHHHHhh---------cCCCceEEEeCCCChHHHHHHHHHHHHhhC---CCCcEEEEecCccHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~---------~~~~~~ILaDemGlGKTiqaia~l~~l~~~---~~~p~LIVvP~sll~qW~~E 351 (1272)
..|+|||+.||.||..+. ..|.|||||+-||||||+|+|+|+..++.. +...+|||||++++.||.+|
T Consensus 667 ~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW~~E 746 (1567)
T KOG1015|consen 667 IKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNWMNE 746 (1567)
T ss_pred hhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHHHHH
Confidence 579999999999995544 357899999999999999999999987643 45699999999999999999
Q ss_pred HHHHCCCCe------EEEEEc--ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---
Q 000811 352 FATWAPQMN------VVMYVG--TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--- 420 (1272)
Q Consensus 352 ~~~~~p~~~------vv~~~G--~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--- 420 (1272)
|.+|.+++. |..+.. ....|....+ .|+ ..-.|+|+.|++++..
T Consensus 747 FekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~-~W~------------------------~~ggVmIiGYdmyRnLa~g 801 (1567)
T KOG1015|consen 747 FEKWMEGLEDDEKLEVSELATVKRPEERSYMLQ-RWQ------------------------EDGGVMIIGYDMYRNLAQG 801 (1567)
T ss_pred HHHhcccccccccceeehhhhccChHHHHHHHH-HHH------------------------hcCCEEEEehHHHHHHhcc
Confidence 999998532 222211 1122221111 110 1225999999998653
Q ss_pred ------------hhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCC
Q 000811 421 ------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1272)
Q Consensus 421 ------------~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~ 488 (1272)
...|..-..++||+||||-|||..+.+++++..+.+.+||+|||||||||+.|++.|++|+.|+.+++
T Consensus 802 r~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs 881 (1567)
T KOG1015|consen 802 RNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGS 881 (1567)
T ss_pred cchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccC
Confidence 12233446799999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhhhh---------------HHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHH
Q 000811 489 LEEFQEEFKDINQ---------------EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILT 553 (1272)
Q Consensus 489 ~~~F~~~f~~~~~---------------~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~ 553 (1272)
..+|.+.|.+.-+ .....-|+.+|..++-|+-...+.+.||||.+++|.|.||+.|..+|..+++
T Consensus 882 ~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~ 961 (1567)
T KOG1015|consen 882 IKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD 961 (1567)
T ss_pred cHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh
Confidence 9999999965321 1234568999999999999999999999999999999999999999999998
Q ss_pred HHHHHHH---hcCCchhhHHHHHHHHHHHhCCccccc-----------------------CCCC----------------
Q 000811 554 RNYQILT---RRGGAQISLINVVMELRKLCCHPYMLE-----------------------GVEP---------------- 591 (1272)
Q Consensus 554 ~~~~~l~---~~~~~~~~l~~~l~~Lrk~c~hP~L~~-----------------------~~e~---------------- 591 (1272)
.....-+ .+.+....|+..+.-|+++.+|||.+. +..+
T Consensus 962 h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks 1041 (1567)
T KOG1015|consen 962 HLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKS 1041 (1567)
T ss_pred hccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccc
Confidence 3222211 122345678888889999999998641 0000
Q ss_pred ------Cc-----------------------------------cc-------------------chHHHHH--------H
Q 000811 592 ------DI-----------------------------------ED-------------------TNESFKQ--------L 603 (1272)
Q Consensus 592 ------~~-----------------------------------~~-------------------~~~~~~~--------l 603 (1272)
+. .+ +.+.+.. .
T Consensus 1042 ~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v 1121 (1567)
T KOG1015|consen 1042 GKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEV 1121 (1567)
T ss_pred cccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhh
Confidence 00 00 0000111 2
Q ss_pred HhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----------------------CCCcEEEEeCCCCHH
Q 000811 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----------------------KKWQYERIDGKVGGA 661 (1272)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~----------------------~g~~~~ridG~~~~~ 661 (1272)
+..||||.+|..+|....+-|.|+|||||....||+|++||.. +|..|.||||+++..
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred hhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHH
Confidence 3458999999999999999999999999999999999999963 466899999999999
Q ss_pred HHHHHHHHHhccCCCc-eEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHH
Q 000811 662 ERQIRIDRFNAKNSSR-FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1272)
Q Consensus 662 ~Rq~~I~~Fn~~~s~~-~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE 740 (1272)
+|++..++||++..-+ .+||||||||++||||-+|+.|||||-.|||..|.|+|-|++|.||+|+|+||||++.||+||
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfiAqGTmEe 1281 (1567)
T KOG1015|consen 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFIAQGTMEE 1281 (1567)
T ss_pred HHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhhhcccHHH
Confidence 9999999999877644 479999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchh-ccCCCHHHHHHHHHhchh
Q 000811 741 RMMQMTKKKMVLEHLVVGRLK-AQNINQEELDDIIRYGSK 779 (1272)
Q Consensus 741 ~I~~~~~~K~~L~~~vig~~~-~~~~~~~el~~ll~~ga~ 779 (1272)
+||.++-.|..+...|+++.. ...++.+||..|..|...
T Consensus 1282 KIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1282 KIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred HHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 999999999999999997653 346888999999877644
No 13
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=4.4e-65 Score=567.82 Aligned_cols=468 Identities=30% Similarity=0.497 Sum_probs=380.2
Q ss_pred cccCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHH
Q 000811 273 QYEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 273 ~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~-~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E 351 (1272)
+-.+||.-+. ..|.|||++|+.|+...-. .-.|||||||||+|||||+|+++.. .-...|+|||||.-.+.||.+|
T Consensus 173 e~aeqP~dli-i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla--e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 173 ERAEQPDDLI-IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA--EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred hcccCcccce-ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh--ccccCCeeEEccHHHHHHHHHH
Confidence 3456676665 6799999999999966544 5689999999999999999999887 3334599999999999999999
Q ss_pred HHHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------
Q 000811 352 FATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------- 420 (1272)
Q Consensus 352 ~~~~~-p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d---------- 420 (1272)
|.+++ ..+++.+|||.+..... . ....||||+|||..+-..
T Consensus 250 I~~~T~gslkv~~YhG~~R~~ni-k---------------------------el~~YDvVLTty~vvEs~yRk~~~Gfrr 301 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNI-K---------------------------ELMNYDVVLTTYAVVESVYRKQDYGFRR 301 (791)
T ss_pred HHHhccCceEEEEEecccccCCH-H---------------------------HhhcCcEEEEecHHHHHHHHhccccccc
Confidence 99998 56899999998765432 1 236899999999987332
Q ss_pred -------hhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHH
Q 000811 421 -------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1272)
Q Consensus 421 -------~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~ 493 (1272)
.+.|.+++|..||+||||.||+..|...+++..+.+.+||.|||||+||.+.|||+|++||..+.|..+ |-
T Consensus 302 Kngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyy--fc 379 (791)
T KOG1002|consen 302 KNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYY--FC 379 (791)
T ss_pred cCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhh--hh
Confidence 456788999999999999999999999999999999999999999999999999999999998876422 11
Q ss_pred HH-----------------------------Hhh------------hhhHHHHHHHHHHhhhhhHHHHHhhHhh--cCCC
Q 000811 494 EE-----------------------------FKD------------INQEEQISRLHRMLAPHLLRRVKKDVMK--ELPP 530 (1272)
Q Consensus 494 ~~-----------------------------f~~------------~~~~~~i~~L~~~L~p~~lRR~k~dv~~--~LP~ 530 (1272)
.. |.. -.........|.+|+.+|+||+|-.-.. .|||
T Consensus 380 ~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPP 459 (791)
T KOG1002|consen 380 TKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPP 459 (791)
T ss_pred hhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCc
Confidence 10 000 0112345578999999999999954333 5899
Q ss_pred ceeEEEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHhCCcccccCCC--------------
Q 000811 531 KKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLCCHPYMLEGVE-------------- 590 (1272)
Q Consensus 531 k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~l~~Lrk~c~hP~L~~~~e-------------- 590 (1272)
....+-.--++..+..+|+.+.......++.- -.+...++.++.+|||...||||+-...
T Consensus 460 Riv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C 539 (791)
T KOG1002|consen 460 RIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVEC 539 (791)
T ss_pred cceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceee
Confidence 98888888899999999999987665554431 2344677888999999999999863210
Q ss_pred --------CCcccc---------------------------------------------hHHH------H----HHHhhh
Q 000811 591 --------PDIEDT---------------------------------------------NESF------K----QLLESS 607 (1272)
Q Consensus 591 --------~~~~~~---------------------------------------------~~~~------~----~li~~S 607 (1272)
+.+... ...+ . .-+++|
T Consensus 540 ~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsS 619 (791)
T KOG1002|consen 540 GLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSS 619 (791)
T ss_pred cccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcch
Confidence 000000 0000 0 013468
Q ss_pred hHHHHHHHHHHHHHHcC--ceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 608 GKLQLLDKMMVKLKEQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 608 ~Kl~~L~klL~~l~~~g--~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
.|+.+|.+-|..+.++. -|.||||||+.|||+|+-.|...|++++.+.|+|+...|...|+.|.++... .|||+|.+
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c-~vfLvSLk 698 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDC-RVFLVSLK 698 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCe-EEEEEEec
Confidence 89999999999888765 4899999999999999999999999999999999999999999999875554 45999999
Q ss_pred ccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchhc--c
Q 000811 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA--Q 763 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~~--~ 763 (1272)
|||+.+||+.|++|+++||+|||+...||++|+|||||.++|.|.||+.++|||++|++.+++|..+.++-+|.... .
T Consensus 699 AGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~qde~Ai~ 778 (791)
T KOG1002|consen 699 AGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQDEEAIS 778 (791)
T ss_pred cCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHHhhhhhhhcCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976522 2
Q ss_pred CCCHHHHHHHH
Q 000811 764 NINQEELDDII 774 (1272)
Q Consensus 764 ~~~~~el~~ll 774 (1272)
.++.++|.-|+
T Consensus 779 kLt~eDmqfLF 789 (791)
T KOG1002|consen 779 KLTEEDMQFLF 789 (791)
T ss_pred hcCHHHHHHHh
Confidence 45666665543
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1e-64 Score=586.73 Aligned_cols=473 Identities=29% Similarity=0.514 Sum_probs=389.8
Q ss_pred ccccCCCCCCCCCCCcHHHHHHHHHHHHhhc-CCCceEEEeCCCChHHHHHHHHHHHHhhC-----C----CCcEEEEec
Q 000811 272 QQYEHSPEFLSGGSLHPYQLEGLNFLRFSWS-KQTHVILADEMGLGKTIQSIAFLASLFGE-----R----ISPHLVVAP 341 (1272)
Q Consensus 272 ~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~-~~~~~ILaDemGlGKTiqaia~l~~l~~~-----~----~~p~LIVvP 341 (1272)
+.+...|..+. ..|.|||..|+.||.-.-. .+.||||||+||||||+++|+++.+-... + ..++|||||
T Consensus 313 t~lte~P~g~~-v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~P 391 (901)
T KOG4439|consen 313 TDLTETPDGLK-VELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICP 391 (901)
T ss_pred ccccCCCCcce-eecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCc
Confidence 34455666554 6899999999999954433 36789999999999999999999876531 1 127999999
Q ss_pred CccHHHHHHHHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh
Q 000811 342 LSTLRNWEREFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL 419 (1272)
Q Consensus 342 ~sll~qW~~E~~~~~--p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~ 419 (1272)
.|++.||..|+++-. --+.|.+|||+.. |.+ .. ....+||||||||..+..
T Consensus 392 aSli~qW~~Ev~~rl~~n~LsV~~~HG~n~-r~i-~~-------------------------~~L~~YDvViTTY~lva~ 444 (901)
T KOG4439|consen 392 ASLIHQWEAEVARRLEQNALSVYLYHGPNK-REI-SA-------------------------KELRKYDVVITTYNLVAN 444 (901)
T ss_pred HHHHHHHHHHHHHHHhhcceEEEEecCCcc-ccC-CH-------------------------HHHhhcceEEEeeecccc
Confidence 999999999998765 3488999999975 221 11 123589999999999866
Q ss_pred ----------hhhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCCh
Q 000811 420 ----------DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSL 489 (1272)
Q Consensus 420 ----------d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~ 489 (1272)
....|..+.|..||+||||.+||..++.+.++..+.+..||.|||||+||++-|+|+|+.||....|++.
T Consensus 445 ~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~ 524 (901)
T KOG4439|consen 445 KPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDL 524 (901)
T ss_pred CCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchH
Confidence 2557888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhh-----cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh---
Q 000811 490 EEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMK-----ELPPKKELILRVELSSKQKEYYKAILTRNYQILTR--- 561 (1272)
Q Consensus 490 ~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~-----~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~--- 561 (1272)
..|.++..... .....++.-+.++.||||+|...-. .||.+...++.++|+..+...|.-+++....++.+
T Consensus 525 ~~Wke~i~~~s-~~g~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~ 603 (901)
T KOG4439|consen 525 KQWKENIDNMS-KGGANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLL 603 (901)
T ss_pred HHHHHhccCcc-ccchhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888775332 2345567777899999999998765 79999999999999999999999888766555432
Q ss_pred -------cCC----------------------------c----hhhHHHHHHHHHHHhCCcccccCCCCCcc-------c
Q 000811 562 -------RGG----------------------------A----QISLINVVMELRKLCCHPYMLEGVEPDIE-------D 595 (1272)
Q Consensus 562 -------~~~----------------------------~----~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~-------~ 595 (1272)
.++ . ...++.++++||++|+||.+.....+... .
T Consensus 604 ~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~ 683 (901)
T KOG4439|consen 604 QREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDD 683 (901)
T ss_pred hhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcch
Confidence 000 0 01257788999999999976643321100 0
Q ss_pred ---------------------------------chHHHHHHHhhhhHHHHHHHHHHHH-HHcCceEEEEecchhhHHHHH
Q 000811 596 ---------------------------------TNESFKQLLESSGKLQLLDKMMVKL-KEQGHRVLIYSQFQHMLDLLE 641 (1272)
Q Consensus 596 ---------------------------------~~~~~~~li~~S~Kl~~L~klL~~l-~~~g~KVLIFsq~~~~ldiL~ 641 (1272)
.....-.....|.|+..+...+..+ .....|++|.||++.+|+++.
T Consensus 684 sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~ 763 (901)
T KOG4439|consen 684 SDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVR 763 (901)
T ss_pred hhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHH
Confidence 0011112234688999988888877 566789999999999999999
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhc
Q 000811 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1272)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRi 721 (1272)
..|...|+.|..|+|.+...+|+.+|+.||....+..|.|||..|||+||||+.|+|+|++|..|||+...||.+|++|+
T Consensus 764 ~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 764 KHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred HHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchhc---cCCCHHHHHHH
Q 000811 722 GQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLKA---QNINQEELDDI 773 (1272)
Q Consensus 722 GQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~~---~~~~~~el~~l 773 (1272)
||+|.|.||||+++||||++|...+.+|+.|+..|+.+... ..++..+|..|
T Consensus 844 GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~L 898 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKL 898 (901)
T ss_pred cccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHH
Confidence 99999999999999999999999999999999999853322 34555555544
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.7e-64 Score=656.76 Aligned_cols=472 Identities=43% Similarity=0.723 Sum_probs=410.0
Q ss_pred CCCCCcHHHHHHHHHHH-HhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC---CCcEEEEecCccHHHHHHHHHHHCC
Q 000811 282 SGGSLHPYQLEGLNFLR-FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWEREFATWAP 357 (1272)
Q Consensus 282 ~g~~Lr~yQlegv~wL~-~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~---~~p~LIVvP~sll~qW~~E~~~~~p 357 (1272)
...+|+|||++|++||. ..+..+.+|||||+||+|||+|+|+++.+++... .+|+|||||.+++.||.+|+.+|.|
T Consensus 335 ~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~~~ 414 (866)
T COG0553 335 LSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKFAP 414 (866)
T ss_pred hhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhhCc
Confidence 34789999999999999 8889999999999999999999999999865542 3699999999999999999999999
Q ss_pred CCe-EEEEEcChhH----HHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh---hhhccCCCcc
Q 000811 358 QMN-VVMYVGTSQA----RNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL---DSASLKPIKW 429 (1272)
Q Consensus 358 ~~~-vv~~~G~~~~----r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~---d~~~L~~~~w 429 (1272)
.++ +.+++|.... +..+....... . ...|++++|||+.+.. +...+..+.|
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------------~-~~~~~v~itty~~l~~~~~~~~~l~~~~~ 473 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLH--------------------L-VIIFDVVITTYELLRRFLVDHGGLKKIEW 473 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhhhc--------------------c-cceeeEEechHHHHHHhhhhHHHHhhcee
Confidence 999 9999998863 44444321000 0 2358999999999999 9999999999
Q ss_pred eeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHH-hhcCCCCC-ChHHHHHHHhhhh-------
Q 000811 430 QCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH-FLDAGKFG-SLEEFQEEFKDIN------- 500 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~-fL~p~~f~-~~~~F~~~f~~~~------- 500 (1272)
+++|+||||++||..+..++++..+++.++++|||||++|++.|||++++ |+.|..++ +...|..+|....
T Consensus 474 ~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 474 DRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred eeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999 99999999 5688999986432
Q ss_pred ----hHHHHHHHHHHhhhhhHHHHHhh--HhhcCCCceeEEEeecCCHHHHHHHHHHHH---HHHHHHHhc--CC-----
Q 000811 501 ----QEEQISRLHRMLAPHLLRRVKKD--VMKELPPKKELILRVELSSKQKEYYKAILT---RNYQILTRR--GG----- 564 (1272)
Q Consensus 501 ----~~~~i~~L~~~L~p~~lRR~k~d--v~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~---~~~~~l~~~--~~----- 564 (1272)
....+..|+.++.||++||+|.+ +...||++.+.++.|.|+..|..+|...+. ++...+... ..
T Consensus 554 ~~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 633 (866)
T COG0553 554 PLEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENR 633 (866)
T ss_pred chhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 12344558899999999999999 899999999999999999999999999999 666555432 11
Q ss_pred ---chhhHHHHHHHHHHHhCCcccccCC-CCCccc----------chHHHHHHHhhh-hHHHHHHHHH-HHHHHcCc--e
Q 000811 565 ---AQISLINVVMELRKLCCHPYMLEGV-EPDIED----------TNESFKQLLESS-GKLQLLDKMM-VKLKEQGH--R 626 (1272)
Q Consensus 565 ---~~~~l~~~l~~Lrk~c~hP~L~~~~-e~~~~~----------~~~~~~~li~~S-~Kl~~L~klL-~~l~~~g~--K 626 (1272)
....+++.++.||++|+||.++... +..... .......++..| +|+..+.++| ..+...|+ |
T Consensus 634 ~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~k 713 (866)
T COG0553 634 IGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHK 713 (866)
T ss_pred ccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHHhhccccc
Confidence 1567899999999999999999765 221111 111123467788 9999999999 89999999 9
Q ss_pred EEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC
Q 000811 627 VLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW 706 (1272)
Q Consensus 627 VLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW 706 (1272)
||||+||+.++++|+++|...++.|+++||+++...|+.+|++|+++ ...+|||+|++|||.||||+.|++||+||++|
T Consensus 714 vlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~-~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 714 VLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNAD-EEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred EEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcC-CCCceEEEEecccccceeecccceEEEecccc
Confidence 99999999999999999999999999999999999999999999987 56678999999999999999999999999999
Q ss_pred ChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcc-h--hccCCCHHHHHHHHH
Q 000811 707 NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGR-L--KAQNINQEELDDIIR 775 (1272)
Q Consensus 707 Np~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~-~--~~~~~~~~el~~ll~ 775 (1272)
||+.+.||++|+|||||++.|.||+|++++|+||+|++++..|+.+...+++. . ....++.+++..++.
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 864 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKLSIEDLLDLFS 864 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhccHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999874 2 223456666666654
No 16
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.5e-57 Score=525.66 Aligned_cols=484 Identities=32% Similarity=0.506 Sum_probs=379.4
Q ss_pred CCCcHHHHHHHHHHH---------HhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCccHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLR---------FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~---------~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~ 353 (1272)
..++|||+-||.||. +.-+.|-|||||+.||||||+|+|+|+..+++.. .+.+|+|+|-.||.||..||.
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNTlQNWlsEfn 332 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINTLQNWLSEFN 332 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHHHHHHHHHhh
Confidence 469999999999883 2224688999999999999999999999887754 469999999999999999999
Q ss_pred HHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-------------
Q 000811 354 TWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------------- 420 (1272)
Q Consensus 354 ~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d------------- 420 (1272)
.|.|.+.. +.. ...+.++++.-....+.... ..+++. +-...-.|+++.|++++.-
T Consensus 333 mWiP~y~s-----D~~--vrpR~F~vf~LnD~~KT~~~-Rakvi~---~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkk 401 (1387)
T KOG1016|consen 333 MWIPKYFS-----DTG--VRPRSFEVFLLNDGVKTFDQ-RAKVIE---QWVQTGGVLLVGYEMFRLLILKTLPKKGRPKK 401 (1387)
T ss_pred hhcCCCcc-----cCC--CccceeEEEEecCchhhHHH-HHHHHH---HHhccCCEEEehHHHHHHHHHhcccccCCccc
Confidence 99986210 000 01122222211111000000 000000 0011234788888887432
Q ss_pred -------------------------hhccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHH
Q 000811 421 -------------------------SASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELF 475 (1272)
Q Consensus 421 -------------------------~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~ 475 (1272)
...|-.-..++||+||+|||||..+.++.+|+.+++++|+.|||-|+|||+.|+|
T Consensus 402 t~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYw 481 (1387)
T KOG1016|consen 402 TLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYW 481 (1387)
T ss_pred cccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHh
Confidence 1223333468999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhh----------h-----HHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecC
Q 000811 476 MLMHFLDAGKFGSLEEFQEEFKDIN----------Q-----EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL 540 (1272)
Q Consensus 476 ~Ll~fL~p~~f~~~~~F~~~f~~~~----------~-----~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~l 540 (1272)
.++.|+.|+.+++..+|.+.|...- . ......||.+|..|+-||+...+...||.+.|+++.|.|
T Consensus 482 CMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~ 561 (1387)
T KOG1016|consen 482 CMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRK 561 (1387)
T ss_pred hhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeH
Confidence 9999999999999999999996421 1 123456999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC-------CC-----------------------
Q 000811 541 SSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG-------VE----------------------- 590 (1272)
Q Consensus 541 s~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~-------~e----------------------- 590 (1272)
|..|+++|+.++......+...+....+.+..+.-..|+.|||-++-. .+
T Consensus 562 s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~ 641 (1387)
T KOG1016|consen 562 SQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNS 641 (1387)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCC
Confidence 999999999998666555444333333445555556677788854300 00
Q ss_pred ----CC--------------------------------cccchHH--------HHHHHhhhhHHHHHHHHHHHHHHcCce
Q 000811 591 ----PD--------------------------------IEDTNES--------FKQLLESSGKLQLLDKMMVKLKEQGHR 626 (1272)
Q Consensus 591 ----~~--------------------------------~~~~~~~--------~~~li~~S~Kl~~L~klL~~l~~~g~K 626 (1272)
+. +....+. -..++.++.|+.++.+++..-..-|.+
T Consensus 642 ~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~k 721 (1387)
T KOG1016|consen 642 IPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEK 721 (1387)
T ss_pred CCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCce
Confidence 00 0000000 012345678888888888888888999
Q ss_pred EEEEecchhhHHHHHHHHHhC------------------CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccc
Q 000811 627 VLIYSQFQHMLDLLEDYLTFK------------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGG 688 (1272)
Q Consensus 627 VLIFsq~~~~ldiL~~~L~~~------------------g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg 688 (1272)
+|||||....||+|+.+|..+ +.+|.|+||.++..+|+++|++||.+.+-.+.||||||||.
T Consensus 722 il~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~ 801 (1387)
T KOG1016|consen 722 ILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGS 801 (1387)
T ss_pred EEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcccc
Confidence 999999999999999999764 34689999999999999999999999888889999999999
Q ss_pred cccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcchh-ccCCCH
Q 000811 689 LGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRLK-AQNINQ 767 (1272)
Q Consensus 689 ~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~~-~~~~~~ 767 (1272)
.||||-+|+.+||||..|||-.+.||..|++|.||+|++.|||||+.+|+|.+|+.++-.|.++.+.|++... ..+++.
T Consensus 802 lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~ 881 (1387)
T KOG1016|consen 802 LGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVDDANPDANISQ 881 (1387)
T ss_pred ccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHHHHHHhhccchhhhhcccCccccccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998774 458999
Q ss_pred HHHHHHHHhch
Q 000811 768 EELDDIIRYGS 778 (1272)
Q Consensus 768 ~el~~ll~~ga 778 (1272)
.|++.|+.+..
T Consensus 882 Ke~enLl~~~e 892 (1387)
T KOG1016|consen 882 KELENLLMYDE 892 (1387)
T ss_pred HHHHHHhhhhh
Confidence 99999998753
No 17
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=3.7e-55 Score=490.37 Aligned_cols=408 Identities=27% Similarity=0.427 Sum_probs=326.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeE--E
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNV--V 362 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~v--v 362 (1272)
.|.|||++||+|. +..|++++||||||||||+|||+++.+.+.++ |.|||||.|+...|..++.+|.|...- +
T Consensus 198 ~LlPFQreGv~fa---L~RgGR~llADeMGLGKTiQAlaIA~yyraEw--plliVcPAsvrftWa~al~r~lps~~pi~v 272 (689)
T KOG1000|consen 198 RLLPFQREGVIFA---LERGGRILLADEMGLGKTIQALAIARYYRAEW--PLLIVCPASVRFTWAKALNRFLPSIHPIFV 272 (689)
T ss_pred hhCchhhhhHHHH---HhcCCeEEEecccccchHHHHHHHHHHHhhcC--cEEEEecHHHhHHHHHHHHHhcccccceEE
Confidence 6999999999875 46799999999999999999999999998876 999999999999999999999987655 2
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCC
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn 442 (1272)
+..+.... +. -....-|.|+||+++......|..-+|.+||+||+|.+|+
T Consensus 273 v~~~~D~~-----------~~-------------------~~t~~~v~ivSye~ls~l~~~l~~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 273 VDKSSDPL-----------PD-------------------VCTSNTVAIVSYEQLSLLHDILKKEKYRVVIFDESHMLKD 322 (689)
T ss_pred EecccCCc-----------cc-------------------cccCCeEEEEEHHHHHHHHHHHhcccceEEEEechhhhhc
Confidence 22222110 00 0123458999999999999999999999999999999999
Q ss_pred cchHHHHHHHhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---------hHHHHHHHHHH
Q 000811 443 KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---------QEEQISRLHRM 511 (1272)
Q Consensus 443 ~~S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~---------~~~~i~~L~~~ 511 (1272)
..++..+++..+. ..|.+||||||--..+.|||.++..+++..|+++.+|...|.+.. .-.+..+|+-+
T Consensus 323 sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 323 SKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred cchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHH
Confidence 9999999888774 789999999999999999999999999999999999999996532 33467778877
Q ss_pred hh-hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000811 512 LA-PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1272)
Q Consensus 512 L~-p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e 590 (1272)
|. ..|+||+|.+|+++||||...++.+ ....+-..-+.++....+- .+.......-...++..++
T Consensus 403 L~k~lMIRRlK~dvL~qLPpKrr~Vv~~-~~gr~da~~~~lv~~a~~~-t~~~~~e~~~~~l~l~y~~------------ 468 (689)
T KOG1000|consen 403 LFKRLMIRRLKADVLKQLPPKRREVVYV-SGGRIDARMDDLVKAAADY-TKVNSMERKHESLLLFYSL------------ 468 (689)
T ss_pred HHHHHHHHHHHHHHHhhCCccceEEEEE-cCCccchHHHHHHHHhhhc-chhhhhhhhhHHHHHHHHH------------
Confidence 75 4699999999999999995555544 3444433333333322110 0000000000001111111
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHH----HHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 000811 591 PDIEDTNESFKQLLESSGKLQLLDKMMVK----LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1272)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~----l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~ 666 (1272)
..-.|+..+.+.|-. ..+.+.|+|||+.+..+||.|+.++..+++.++||||+|++..|+.+
T Consensus 469 --------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll 534 (689)
T KOG1000|consen 469 --------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLL 534 (689)
T ss_pred --------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHH
Confidence 122355555555554 44567899999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHH
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~ 746 (1272)
++.|+... ...|-+||..|+|+||+|++|+.|+|.+..|||...+||.+|+||+||+..|.||+|++++|+|+.++...
T Consensus 535 ~qsFQ~se-ev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~Ddy~Wp~l 613 (689)
T KOG1000|consen 535 CQSFQTSE-EVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTADDYMWPML 613 (689)
T ss_pred HHHhcccc-ceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEEEEEecCchHHHHHHHH
Confidence 99998744 44557999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 000811 747 KKKMVLEHLV 756 (1272)
Q Consensus 747 ~~K~~L~~~v 756 (1272)
.+|+.....+
T Consensus 614 ~~KL~vl~s~ 623 (689)
T KOG1000|consen 614 QQKLDVLGSV 623 (689)
T ss_pred HHHHHHHhhc
Confidence 9998755443
No 18
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=1.9e-52 Score=530.20 Aligned_cols=417 Identities=19% Similarity=0.280 Sum_probs=321.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~~~~p~~~vv 362 (1272)
..|.|||+..+.++... ...++|||||||||||++|++++..+...+ .+|+|||||.+++.||..|+.+|+ ++...
T Consensus 151 ~~l~pHQl~~~~~vl~~--~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRR--HAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhhc--cCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 56999999998776443 467899999999999999999999887655 469999999999999999998887 56777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---hccCCCcceeEEeccccc
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASLKPIKWQCMIVDEGHR 439 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~---~~L~~~~w~~vIvDEaHr 439 (1272)
++.+...... . .. .......++++|+||+.+..+. ..+....|++|||||||+
T Consensus 228 i~~~~~~~~~-------~-~~----------------~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~ 283 (956)
T PRK04914 228 LFDEERYAEA-------Q-HD----------------ADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHH 283 (956)
T ss_pred EEcCcchhhh-------c-cc----------------ccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhh
Confidence 7765542210 0 00 0011235789999999998754 446677999999999999
Q ss_pred cCC---cchHHHHHHHhc--ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hh-----------
Q 000811 440 LKN---KDSKLFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---IN----------- 500 (1272)
Q Consensus 440 lKn---~~S~~~~~l~~l--~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~---~~----------- 500 (1272)
+++ ..|+.++.+..+ .+.++|+|||||+||++.|+|++|+||+|+.|+++..|.+.... +.
T Consensus 284 lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 284 LVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred hccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 995 356778888887 46799999999999999999999999999999999999865421 10
Q ss_pred -hHHHHHHHHHH---------------------------h---------hhhhHHHHHhhHhhcCCCceeEEEeecCCHH
Q 000811 501 -QEEQISRLHRM---------------------------L---------APHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1272)
Q Consensus 501 -~~~~i~~L~~~---------------------------L---------~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~ 543 (1272)
.......|..+ + .+.|+|+++++|. .+|++..+.+.++|.+.
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R~~~~~~l~~~~~ 442 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKRELHPIPLPLPEQ 442 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcCceeEeecCCCHH
Confidence 01111122111 1 2567889999876 68999999999999664
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc-cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000811 544 QKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY-MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKE 622 (1272)
Q Consensus 544 Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~-L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~ 622 (1272)
|........ ...++++ .+|. ++.... ........++|+..|.++|+.+.
T Consensus 443 ----y~~~~~~~~----------------~~~~~~~-l~pe~~~~~~~--------~~~~~~~~d~Ki~~L~~~L~~~~- 492 (956)
T PRK04914 443 ----YQTAIKVSL----------------EARARDM-LYPEQIYQEFE--------DNATWWNFDPRVEWLIDFLKSHR- 492 (956)
T ss_pred ----HHHHHHHhH----------------HHHHHhh-cCHHHHHHHHh--------hhhhccccCHHHHHHHHHHHhcC-
Confidence 332221100 0111221 1221 000000 00112345679999999887753
Q ss_pred cCceEEEEecchhhHHHHHHHH-HhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi 701 (1272)
+.||||||++..+++.|.+.| ...|+++..|+|+++..+|+++++.|++++.+ ..|||||.+||+|+||+.|++||+
T Consensus 493 -~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~-~~VLIsTdvgseGlNlq~a~~VIn 570 (956)
T PRK04914 493 -SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDG-AQVLLCSEIGSEGRNFQFASHLVL 570 (956)
T ss_pred -CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCC-ccEEEechhhccCCCcccccEEEE
Confidence 789999999999999999999 56799999999999999999999999875433 247899999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhcch
Q 000811 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLEHLVVGRL 760 (1272)
Q Consensus 702 ~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~~~vig~~ 760 (1272)
||.||||..++||+||+||+||++.|.||.+++++|+++.|++...+|+.+...+++..
T Consensus 571 fDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~ 629 (956)
T PRK04914 571 FDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (956)
T ss_pred ecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCH
Confidence 99999999999999999999999999999999999999999999999998877776543
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-47 Score=469.90 Aligned_cols=437 Identities=30% Similarity=0.500 Sum_probs=357.0
Q ss_pred HHHHHHHHHHHH-hhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC--------CCcEEEEecCccHHHHHHHHHHHC--
Q 000811 288 PYQLEGLNFLRF-SWSKQTHVILADEMGLGKTIQSIAFLASLFGER--------ISPHLVVAPLSTLRNWEREFATWA-- 356 (1272)
Q Consensus 288 ~yQlegv~wL~~-~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~--------~~p~LIVvP~sll~qW~~E~~~~~-- 356 (1272)
.+|..+..|+.. .+..-.|||+||+||+|||+++|+++....... .+..|||||.+++.||..|+.+..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 566666655532 234467899999999999999999988764332 247899999999999999996655
Q ss_pred CCCeEEEEEc-ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEec
Q 000811 357 PQMNVVMYVG-TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1272)
Q Consensus 357 p~~~vv~~~G-~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvD 435 (1272)
..+.+.+|+| .+.. ....+++||||||.++.. ..+..+.|-.||+|
T Consensus 215 ~~l~v~v~~gr~kd~-------------------------------~el~~~dVVltTy~il~~--~~l~~i~w~Riild 261 (674)
T KOG1001|consen 215 DKLSIYVYHGRTKDK-------------------------------SELNSYDVVLTTYDILKN--SPLVKIKWLRIVLD 261 (674)
T ss_pred cceEEEEeccccccc-------------------------------chhcCCceEEeeHHHhhc--ccccceeEEEEEec
Confidence 3577888888 2111 123578899999999975 67778999999999
Q ss_pred cccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh---h-HHHHHHHHHH
Q 000811 436 EGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN---Q-EEQISRLHRM 511 (1272)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~---~-~~~i~~L~~~ 511 (1272)
|||.++|.+++.++++..+.+.+||.|||||+||++.|||+++.|+.-+.+.....|...+.... . ...+..++.+
T Consensus 262 ea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~ 341 (674)
T KOG1001|consen 262 EAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGI 341 (674)
T ss_pred cccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888887775432 2 3567888999
Q ss_pred hhhhhHHHHHhhH-----hhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhc------CCchhhHHHHHHHHHHHh
Q 000811 512 LAPHLLRRVKKDV-----MKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRR------GGAQISLINVVMELRKLC 580 (1272)
Q Consensus 512 L~p~~lRR~k~dv-----~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~------~~~~~~l~~~l~~Lrk~c 580 (1272)
|..+++||+|..- .-.|||+...++.+.++..++.+|+.+........... ..+...++..+.+||++|
T Consensus 342 L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c 421 (674)
T KOG1001|consen 342 LKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQAC 421 (674)
T ss_pred HHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHc
Confidence 9999999999633 23689999999999999999999999987765544321 223456777788999999
Q ss_pred CCcccccCCCCCcc----cch-----------------------------------H---------------------HH
Q 000811 581 CHPYMLEGVEPDIE----DTN-----------------------------------E---------------------SF 600 (1272)
Q Consensus 581 ~hP~L~~~~e~~~~----~~~-----------------------------------~---------------------~~ 600 (1272)
+||.++-....... ... + ..
T Consensus 422 ~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 422 DHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 99987632110000 000 0 00
Q ss_pred HHHHh-------------hhhHHHHHHHHHHHHHHcCc-eEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 000811 601 KQLLE-------------SSGKLQLLDKMMVKLKEQGH-RVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1272)
Q Consensus 601 ~~li~-------------~S~Kl~~L~klL~~l~~~g~-KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~ 666 (1272)
..++. .|.|+..+.++|........ +++||||++.++++++-.|...++.+.+++|.++...|...
T Consensus 502 ~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s 581 (674)
T KOG1001|consen 502 KKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKS 581 (674)
T ss_pred HHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhh
Confidence 01111 26677777787775444444 99999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHH
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMT 746 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~ 746 (1272)
+..|+. +....+.|+|.+|||.|+||+.|++||++|++|||....||++||||+||+++|.|+||++++|+||+|+.++
T Consensus 582 ~~~~~~-~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v~r~~i~dtveer~l~iq 660 (674)
T KOG1001|consen 582 FTDFPC-DPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKVSRFIIKDTVEERILKIQ 660 (674)
T ss_pred hccccc-CccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeeeeeehhhhccHHHHHHHH
Confidence 999994 4445568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc
Q 000811 747 KKKMVLEHLVVG 758 (1272)
Q Consensus 747 ~~K~~L~~~vig 758 (1272)
++|..+.....|
T Consensus 661 ~~K~~~~~~a~~ 672 (674)
T KOG1001|consen 661 EKKREYNASAFG 672 (674)
T ss_pred HHHHHHHhhhcc
Confidence 999998877654
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=9.5e-41 Score=383.82 Aligned_cols=272 Identities=42% Similarity=0.699 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHhh---------cCCCceEEEeCCCChHHHHHHHHHHHHhhCCC----CcEEEEecCccHHHHHHHHHHH
Q 000811 289 YQLEGLNFLRFSW---------SKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 289 yQlegv~wL~~~~---------~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~----~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
||++||+||...+ ...+||||||+||+|||+++++++.++..... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 78899999999999999999999998876543 2699999999999999999999
Q ss_pred C-C-CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHH-----hhhhccCCCc
Q 000811 356 A-P-QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN-----LDSASLKPIK 428 (1272)
Q Consensus 356 ~-p-~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~-----~d~~~L~~~~ 428 (1272)
+ | .+++++|.|....+... ......++++|+||+.+. .....+..++
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~--------------------------~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~ 134 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERRRLS--------------------------KNQLPKYDVVITTYETLRKARKKKDKEDLKQIK 134 (299)
T ss_dssp SGT-TS-EEEESSSCHHHHTT--------------------------SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSE
T ss_pred ccccccccccccccccccccc--------------------------ccccccceeeecccccccccccccccccccccc
Confidence 9 4 68888888887222110 112357899999999999 6677888899
Q ss_pred ceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh---hhhHHHH
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD---INQEEQI 505 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~---~~~~~~i 505 (1272)
|++|||||||++||..+..++++..+.+.++|+|||||++|++.|||++++||.|+.+.+...|.+.|.. .......
T Consensus 135 ~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~ 214 (299)
T PF00176_consen 135 WDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENI 214 (299)
T ss_dssp EEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHH
T ss_pred ceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999998843 3456778
Q ss_pred HHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcC----CchhhHHHHHHHHHHHhC
Q 000811 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRG----GAQISLINVVMELRKLCC 581 (1272)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~----~~~~~l~~~l~~Lrk~c~ 581 (1272)
..|..+++++++||++.++...+|+..+.++.|+||+.|+..|+.+.......+.... +....++..+++||++|+
T Consensus 215 ~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~c~ 294 (299)
T PF00176_consen 215 ERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSSRKKSKKLSSLLQILKRLRQVCN 294 (299)
T ss_dssp HHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T--TCHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHhC
Confidence 8999999999999999999889999999999999999999999998887765544332 334678999999999999
Q ss_pred Ccccc
Q 000811 582 HPYML 586 (1272)
Q Consensus 582 hP~L~ 586 (1272)
||+|+
T Consensus 295 hp~l~ 299 (299)
T PF00176_consen 295 HPYLV 299 (299)
T ss_dssp -THHC
T ss_pred CcccC
Confidence 99974
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.8e-37 Score=377.96 Aligned_cols=341 Identities=16% Similarity=0.264 Sum_probs=255.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC--CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc-HHHHHHHHHHHC--C
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWA--P 357 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~--p 357 (1272)
..+|||||.++++++. .++ ++|||.++||+|||+++++++..+. +++|||||.++ +.||.++|.+|+ +
T Consensus 253 ~~~LRpYQ~eAl~~~~---~~gr~r~GIIvLPtGaGKTlvai~aa~~l~----k~tLILvps~~Lv~QW~~ef~~~~~l~ 325 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVTAACTVK----KSCLVLCTSAVSVEQWKQQFKMWSTID 325 (732)
T ss_pred CCCcCHHHHHHHHHHH---hcCCCCCcEEEeCCCCChHHHHHHHHHHhC----CCEEEEeCcHHHHHHHHHHHHHhcCCC
Confidence 4789999999998773 333 5899999999999999999887662 58999999765 789999999997 3
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------hhccCCC
Q 000811 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPI 427 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----------~~~L~~~ 427 (1272)
...+..|+|....+. ....+|+|+||+++... ...|...
T Consensus 326 ~~~I~~~tg~~k~~~-------------------------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~ 374 (732)
T TIGR00603 326 DSQICRFTSDAKERF-------------------------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNR 374 (732)
T ss_pred CceEEEEecCccccc-------------------------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccc
Confidence 456666776532210 12357999999998643 2345566
Q ss_pred cceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhh-cCCCCCChHHHHHHHhhhhhHHHHH
Q 000811 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFL-DAGKFGSLEEFQEEFKDINQEEQIS 506 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL-~p~~f~~~~~F~~~f~~~~~~~~i~ 506 (1272)
.|++||+||||++.+ ....+.+..+.+.+||+|||||++++ +.+..+.++ .|..|.
T Consensus 375 ~~gLII~DEvH~lpA--~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye------------------- 431 (732)
T TIGR00603 375 EWGLILLDEVHVVPA--AMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------------------- 431 (732)
T ss_pred cCCEEEEEccccccH--HHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeee-------------------
Confidence 899999999999954 34555677788999999999999876 223334433 333321
Q ss_pred HHHHHhhhhhHHHHHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcc
Q 000811 507 RLHRMLAPHLLRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPY 584 (1272)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~ 584 (1272)
-.-.++. ..|.+.....|+|+|++.....|.. ... . .+..
T Consensus 432 ------------~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~---~~~-------~-----------~k~~----- 473 (732)
T TIGR00603 432 ------------ANWMELQKKGFIANVQCAEVWCPMTPEFYREYLR---ENS-------R-----------KRML----- 473 (732)
T ss_pred ------------cCHHHHHhCCccccceEEEEEecCCHHHHHHHHH---hcc-------h-----------hhhH-----
Confidence 1111221 2467777888999999875444421 100 0 0000
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q 000811 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1272)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq 664 (1272)
....+..|+..+..++......|+|+||||+++..++.+...|. ...|+|+++..+|.
T Consensus 474 -----------------l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~ 531 (732)
T TIGR00603 474 -----------------LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERM 531 (732)
T ss_pred -----------------HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHH
Confidence 00124568888888888766789999999999998888877773 34589999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhhhcCCCCc-----eEEEEEeeCCCH
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNK-----VMIFRLITRGSI 738 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW-Np~~~~Qa~gRahRiGQ~k~-----V~Vyrlit~~Tv 738 (1272)
+++++|+.++ .+.+|++|++|++||||+.|++||++++++ |+..++||+||+.|.+..+. +.+|.||+++|.
T Consensus 532 ~il~~Fr~~~--~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 532 QILQNFQHNP--KVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred HHHHHHHhCC--CccEEEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999998532 334688889999999999999999999986 99999999999999997653 789999999999
Q ss_pred HHHHHHHH
Q 000811 739 EERMMQMT 746 (1272)
Q Consensus 739 EE~I~~~~ 746 (1272)
|+..-.+-
T Consensus 610 E~~~s~~R 617 (732)
T TIGR00603 610 EMYYSTKR 617 (732)
T ss_pred HHHHHHHH
Confidence 98875443
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.8e-33 Score=358.64 Aligned_cols=431 Identities=18% Similarity=0.208 Sum_probs=283.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCC--CCe
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP--QMN 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p--~~~ 360 (1272)
.++|+||.+.+..+. . +++|++++||+|||++++.++..++....+++|||||+ .++.||..++.+++. ..+
T Consensus 14 ~~~r~yQ~~~~~~~l----~-~n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 14 IEARLYQQLLAATAL----K-KNTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CCccHHHHHHHHHHh----c-CCeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 578999999887652 2 38999999999999999988887775445699999997 677899999998863 247
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEecccc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvDEaH 438 (1272)
+++++|.......... ....+|+|+|++.+..+. ..+....|++|||||||
T Consensus 89 v~~~~g~~~~~~r~~~---------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 89 IVVFTGEVSPEKRAEL---------------------------WEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EEEEeCCCCHHHHHHH---------------------------HhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 8888886543321111 124579999999987653 23344578999999999
Q ss_pred ccCCcchHHHHHHHhc---ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChH----HHHHHHh-------hhhhHHH
Q 000811 439 RLKNKDSKLFSSLKQY---STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLE----EFQEEFK-------DINQEEQ 504 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l---~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~----~F~~~f~-------~~~~~~~ 504 (1272)
++.+..+..+.+-... ...++++|||||.++ ...+..+++-|....+..+. ++...+. ...-...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~ 220 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEE 220 (773)
T ss_pred cccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHH
Confidence 9987665444332222 244689999999765 56676666666533321111 1111111 1122355
Q ss_pred HHHHHHHhhhhhHHHHHhhHhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHHH---HH---------Hh-----cCCch
Q 000811 505 ISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQ---IL---------TR-----RGGAQ 566 (1272)
Q Consensus 505 i~~L~~~L~p~~lRR~k~dv~~~-LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~---~l---------~~-----~~~~~ 566 (1272)
+..++..|..++.++.+...... .++....+....+...++.++..+...... .+ .. .....
T Consensus 221 ~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 300 (773)
T PRK13766 221 LKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGV 300 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCH
Confidence 67788888888888777644322 222221122222223333333222110000 00 00 00011
Q ss_pred hhHHHHHHHHHHHhCCcccccCCCCCcccc-----hHHHHHHHhhhhHHHHHHHHHHHHH--HcCceEEEEecchhhHHH
Q 000811 567 ISLINVVMELRKLCCHPYMLEGVEPDIEDT-----NESFKQLLESSGKLQLLDKMMVKLK--EQGHRVLIYSQFQHMLDL 639 (1272)
Q Consensus 567 ~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~-----~~~~~~li~~S~Kl~~L~klL~~l~--~~g~KVLIFsq~~~~ldi 639 (1272)
..+...+..++....++........-.... ......+...++|+..|.++|.... ..+.|+||||++.++++.
T Consensus 301 ~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~ 380 (773)
T PRK13766 301 EALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEK 380 (773)
T ss_pred HHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHH
Confidence 122222222322221110000000000000 0011222345789999999999876 568999999999999999
Q ss_pred HHHHHHhCCCcEEEEeCC--------CCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhH
Q 000811 640 LEDYLTFKKWQYERIDGK--------VGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHAD 711 (1272)
Q Consensus 640 L~~~L~~~g~~~~ridG~--------~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~ 711 (1272)
|.++|...|+.+.+++|. ++..+|+.++++|+++. +.+|++|.++++|+|++.+++||+||++|||..+
T Consensus 381 L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~---~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~ 457 (773)
T PRK13766 381 IVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGE---FNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRS 457 (773)
T ss_pred HHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcCC---CCEEEECChhhcCCCcccCCEEEEeCCCCCHHHH
Confidence 999999999999999997 78889999999998753 4489999999999999999999999999999999
Q ss_pred HHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 000811 712 LQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1272)
Q Consensus 712 ~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~ 753 (1272)
+|+.||++|.|+ +.||.|++++|+||.++....+|....
T Consensus 458 iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~ 496 (773)
T PRK13766 458 IQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKM 496 (773)
T ss_pred HHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHH
Confidence 998888877665 778999999999999988776665544
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.97 E-value=3.8e-30 Score=316.98 Aligned_cols=256 Identities=26% Similarity=0.463 Sum_probs=198.3
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHh------------hCC-----CCcEEEEecCccHHHHHHHHHHHCCCC-eEEE
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLF------------GER-----ISPHLVVAPLSTLRNWEREFATWAPQM-NVVM 363 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~------------~~~-----~~p~LIVvP~sll~qW~~E~~~~~p~~-~vv~ 363 (1272)
..|..+++||+||+|||...++....-. ..+ .|.+|||||.+++.||..||.++++.. +|..
T Consensus 372 ~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 372 KHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred cCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEE
Confidence 4466789999999999998777654322 111 358999999999999999999999776 9999
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------------------h
Q 000811 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------------------S 421 (1272)
Q Consensus 364 ~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----------------------~ 421 (1272)
|.|-...--. .......+|||+|||+.++.+ .
T Consensus 452 Y~Girk~~~~--------------------------~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~ 505 (1394)
T KOG0298|consen 452 YFGIRKTFWL--------------------------SPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPN 505 (1394)
T ss_pred Eechhhhccc--------------------------CchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCC
Confidence 9987653210 012346899999999999775 2
Q ss_pred hccCCCcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000811 422 ASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1272)
Q Consensus 422 ~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~ 501 (1272)
+.|-.+.|..||+|||+-+....|..++.+..+.+.++|.+||||+|+ +.+||.||.||.-..|.....|.+.......
T Consensus 506 SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~ 584 (1394)
T KOG0298|consen 506 SPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQ 584 (1394)
T ss_pred CchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHH
Confidence 335556799999999999999999999999999999999999999999 9999999999999999999888776543211
Q ss_pred -HHHHHHHHHHhhhhhHHHHHhhHhhc--CCCceeEEEeecCCHHHHHHHHHHHHH----HHH---HHHh---c--C---
Q 000811 502 -EEQISRLHRMLAPHLLRRVKKDVMKE--LPPKKELILRVELSSKQKEYYKAILTR----NYQ---ILTR---R--G--- 563 (1272)
Q Consensus 502 -~~~i~~L~~~L~p~~lRR~k~dv~~~--LP~k~e~~v~v~ls~~Q~~~Y~~il~~----~~~---~l~~---~--~--- 563 (1272)
......+++++...+-|+.|.+|... +||-.+.+....+++.+..+|+..... ... .+.+ . .
T Consensus 585 ~ra~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~ 664 (1394)
T KOG0298|consen 585 LRAKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLA 664 (1394)
T ss_pred HHhhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccc
Confidence 13344678888999999999998774 799888888888888888777654322 211 1111 0 0
Q ss_pred ----CchhhHHHHHHHHHHHhCCcc
Q 000811 564 ----GAQISLINVVMELRKLCCHPY 584 (1272)
Q Consensus 564 ----~~~~~l~~~l~~Lrk~c~hP~ 584 (1272)
.....+++-+.+||++|+||-
T Consensus 665 ~l~~~~~a~i~~~l~rLRq~Cchpl 689 (1394)
T KOG0298|consen 665 SLSPQLLAIILKWLLRLRQACCHPL 689 (1394)
T ss_pred cCChhhHHHHHHHHHHHHHhhcccc
Confidence 012457888999999999984
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=1.9e-28 Score=280.50 Aligned_cols=419 Identities=17% Similarity=0.199 Sum_probs=269.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHC--CCCe
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQMN 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~--p~~~ 360 (1272)
.+.|.||+.-+.-.+ .+|++++.+||||||+.|+.++.+.+....+.+|+++|+ .++.|-..-|.+.+ |...
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 468999998765432 349999999999999999999987766655699999995 67788888888877 6678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEecccc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvDEaH 438 (1272)
++.++|.-........ ..+-.|++.|++++.+|. ..+..-.+.+||+||||
T Consensus 89 i~~ltGev~p~~R~~~---------------------------w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAH 141 (542)
T COG1111 89 IAALTGEVRPEEREEL---------------------------WAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAH 141 (542)
T ss_pred eeeecCCCChHHHHHH---------------------------HhhCCEEEeccHHHHhHHhcCccChHHceEEEechhh
Confidence 8899997543221111 135569999999998873 34555678999999999
Q ss_pred ccCCcchHHHHH--HHhcccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCC----ChHHHHHHHh-------hhhhHHH
Q 000811 439 RLKNKDSKLFSS--LKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFG----SLEEFQEEFK-------DINQEEQ 504 (1272)
Q Consensus 439 rlKn~~S~~~~~--l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~----~~~~F~~~f~-------~~~~~~~ 504 (1272)
|.-+..+-.+-+ ......+ +.|+||||| -++.+.+...+.=|..+... ...+...... .+.-...
T Consensus 142 RAvGnyAYv~Va~~y~~~~k~~~ilgLTASP-Gs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e 220 (542)
T COG1111 142 RAVGNYAYVFVAKEYLRSAKNPLILGLTASP-GSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEE 220 (542)
T ss_pred hccCcchHHHHHHHHHHhccCceEEEEecCC-CCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHH
Confidence 998777654433 3333333 689999999 45666666666655543321 1111111111 1112233
Q ss_pred HHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCC-HHHHHHHHHHHHHHHHHHHhcC--------------------
Q 000811 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRG-------------------- 563 (1272)
Q Consensus 505 i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls-~~Q~~~Y~~il~~~~~~l~~~~-------------------- 563 (1272)
+..+.+.|+..+-.|++.--... +...-+ -.++.+.... . .........
T Consensus 221 ~~~ir~~l~~~l~~~Lk~L~~~g--------~~~~~~~~~~kdl~~~~-~-~~~~~a~~~~~~~~~~l~~~a~~~kl~~a 290 (542)
T COG1111 221 IKEIRDLLRDALKPRLKPLKELG--------VIESSSPVSKKDLLELR-Q-IRLIMAKNEDSDKFRLLSVLAEAIKLAHA 290 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--------ceeccCcccHhHHHHHH-H-HHHHhccCccHHHHHHHHHHHHHHHHHHH
Confidence 33444444333333333211111 111111 1122222222 0 000000000
Q ss_pred ------CchhhHHHHHHHHHHHhCCcccc---cCCCCCcccchHHHHHHH------hhhhHHHHHHHHHHHHH--HcCce
Q 000811 564 ------GAQISLINVVMELRKLCCHPYML---EGVEPDIEDTNESFKQLL------ESSGKLQLLDKMMVKLK--EQGHR 626 (1272)
Q Consensus 564 ------~~~~~l~~~l~~Lrk~c~hP~L~---~~~e~~~~~~~~~~~~li------~~S~Kl~~L~klL~~l~--~~g~K 626 (1272)
.+...+.+-+.+|..-|.. -.. ...-.+ ......+..+. -..+||..+.+++.+.. ..+.|
T Consensus 291 ~elletqGi~~~~~Yl~~l~e~~~~-~~sk~a~~l~~d-~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~R 368 (542)
T COG1111 291 LELLETQGIRPFYQYLEKLEEEATK-GGSKAAKSLLAD-PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSR 368 (542)
T ss_pred HHHHHhhChHHHHHHHHHHHHHhcc-cchHHHHHHhcC-hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCce
Confidence 0011111112222211111 000 000000 00001111111 13689999999999876 55789
Q ss_pred EEEEecchhhHHHHHHHHHhCCCcEE-EEeC--------CCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCC
Q 000811 627 VLIYSQFQHMLDLLEDYLTFKKWQYE-RIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1272)
Q Consensus 627 VLIFsq~~~~ldiL~~~L~~~g~~~~-ridG--------~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad 697 (1272)
||||++|.++++.|.++|...|.... ++-| +|++.+..++|+.|.++.-+ +|++|..|.+|||++++|
T Consensus 369 vIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~n---VLVaTSVgEEGLDIp~vD 445 (542)
T COG1111 369 VIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYN---VLVATSVGEEGLDIPEVD 445 (542)
T ss_pred EEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcCCce---EEEEcccccccCCCCccc
Confidence 99999999999999999999988876 7766 47888999999999875544 899999999999999999
Q ss_pred EEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHH
Q 000811 698 TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMVLE 753 (1272)
Q Consensus 698 ~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~L~ 753 (1272)
.||+|||--+|-..+||+||.+| ++.-.||-|+++||-||.-+..+.+|..-.
T Consensus 446 lVifYEpvpSeIR~IQR~GRTGR---~r~Grv~vLvt~gtrdeayy~~s~rke~~m 498 (542)
T COG1111 446 LVIFYEPVPSEIRSIQRKGRTGR---KRKGRVVVLVTEGTRDEAYYYSSRRKEQKM 498 (542)
T ss_pred EEEEecCCcHHHHHHHhhCcccc---CCCCeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999888 477889999999999999999988886543
No 25
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=2.8e-28 Score=293.65 Aligned_cols=362 Identities=20% Similarity=0.288 Sum_probs=269.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCC-e
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM-N 360 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~-~ 360 (1272)
..+|||||.+++.-+...+..++.|++...+|.|||+.++.++..+.. ++|||||. .++.||...+.+++... .
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~ 109 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLNDE 109 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcC----CEEEEECcHHHHHHHHHHHHHhcCCccc
Confidence 368999999999766666665889999999999999999999987754 39999996 66799998888887432 2
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCcccccccccccc-ccEEEecHHHHHhhh--hccCCCcceeEEeccc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIK-FDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fdVvItSye~l~~d~--~~L~~~~w~~vIvDEa 437 (1272)
+-.+.|.... .. ..|.|+||+++.+.. ..+..-.|++||+|||
T Consensus 110 ~g~~~~~~~~----------------------------------~~~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~ 155 (442)
T COG1061 110 IGIYGGGEKE----------------------------------LEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEV 155 (442)
T ss_pred cceecCceec----------------------------------cCCCcEEEEEhHHHhhhhhhhhhcccccCEEEEEcc
Confidence 3333333211 11 469999999998863 3333447999999999
Q ss_pred cccCCcchHHHHHHHhccccc-EEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 000811 438 HRLKNKDSKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1272)
Q Consensus 438 HrlKn~~S~~~~~l~~l~~~~-rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1272)
|++...... ..+..+...+ +|+|||||.......+.. +...+.|..
T Consensus 156 Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~-------------------------------l~~~~g~~v 202 (442)
T COG1061 156 HHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGD-------------------------------LFDLIGPIV 202 (442)
T ss_pred ccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhH-------------------------------HHHhcCCeE
Confidence 998765433 3334444555 999999995433222222 233333333
Q ss_pred HHHHHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 517 LRRVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 517 lRR~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
......+.+ ..|.|.....+.+.++......|.....+....+..... . .
T Consensus 203 y~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~------~----------------------~ 254 (442)
T COG1061 203 YEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT------L----------------------R 254 (442)
T ss_pred eecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh------h----------------------h
Confidence 333333332 358899999999999999999988776665544432221 0 0
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccC
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~ 674 (1272)
..............|+..+..++.... ++.+++||+..+...+.|...+...|+ ...++|.++..+|.++++.|..+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~fr~g~ 332 (442)
T COG1061 255 AENEARRIAIASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERFRTGG 332 (442)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHHHcCC
Confidence 011112333446678888888888776 889999999999999999999998888 999999999999999999998755
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhh-cCCCCc--eEEEEEeeCCCHHHHHHHHHHH
Q 000811 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHR-LGQTNK--VMIFRLITRGSIEERMMQMTKK 748 (1272)
Q Consensus 675 s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahR-iGQ~k~--V~Vyrlit~~TvEE~I~~~~~~ 748 (1272)
+.+|++++.+++|+|++.|+++|+..+.-++..++|++||+.| ...++. +..|-+++..+.+..+......
T Consensus 333 ---~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 333 ---IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred ---CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEEEeecCcccccchhhhhhh
Confidence 5589999999999999999999999999999999999999999 444444 7778888888888877665554
No 26
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.6e-27 Score=292.44 Aligned_cols=337 Identities=14% Similarity=0.163 Sum_probs=230.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHC--CCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~--p~~ 359 (1272)
.+.|||||.+++.-+ ..+.++||...||+|||++++.++..+...+.+++|||||+ .++.||.++|.+|. |..
T Consensus 112 ~~~~r~~Q~~av~~~----l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 112 KIEPHWYQYDAVYEG----LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred cCCCCHHHHHHHHHH----HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 368999999998654 24677899999999999998776666555554599999996 77899999999976 322
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccc
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHR 439 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHr 439 (1272)
.+....|.... ....+|+|+|++.+......+. -.+++|||||||+
T Consensus 188 ~~~~i~~g~~~---------------------------------~~~~~I~VaT~qsl~~~~~~~~-~~~~~iIvDEaH~ 233 (501)
T PHA02558 188 AMHKIYSGTAK---------------------------------DTDAPIVVSTWQSAVKQPKEWF-DQFGMVIVDECHL 233 (501)
T ss_pred ceeEEecCccc---------------------------------CCCCCEEEeeHHHHhhchhhhc-cccCEEEEEchhc
Confidence 33222222110 1245799999999875432211 2678999999999
Q ss_pred cCCcchHHHHHHHhc-ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhHH
Q 000811 440 LKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLR 518 (1272)
Q Consensus 440 lKn~~S~~~~~l~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lR 518 (1272)
+... .....+..+ ++.++++|||||-..... .+.+..++.|-.. +
T Consensus 234 ~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~~-~~~~~~~fG~i~~-------------------------------~ 279 (501)
T PHA02558 234 FTGK--SLTSIITKLDNCKFKFGLTGSLRDGKAN-ILQYVGLFGDIFK-------------------------------P 279 (501)
T ss_pred ccch--hHHHHHHhhhccceEEEEeccCCCcccc-HHHHHHhhCCceE-------------------------------E
Confidence 9753 345556666 477899999999533211 1111111111110 0
Q ss_pred HHHhhHh--hcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000811 519 RVKKDVM--KELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1272)
Q Consensus 519 R~k~dv~--~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~ 596 (1272)
-...++. ..+.+.....+.+..++.....+ ... . .
T Consensus 280 v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~-------------~~~---~---------------------------~ 316 (501)
T PHA02558 280 VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKL-------------KGE---D---------------------------Y 316 (501)
T ss_pred ecHHHHHhCCCcCCceEEEEeccCCHHHhhhh-------------ccc---c---------------------------h
Confidence 0001111 12222333344444443211000 000 0 0
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCC
Q 000811 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1272)
Q Consensus 597 ~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~ 676 (1272)
...+..+.....+-.++.+++..+...|+++|||+..+..++.|.+.|...|+++..++|+++.++|..+++.|+++.
T Consensus 317 ~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~-- 394 (501)
T PHA02558 317 QEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGK-- 394 (501)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCC--
Confidence 011122333445666777777777788999999999999999999999999999999999999999999999997532
Q ss_pred ceEEEee-ccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC-ceEEEEEeeCCC
Q 000811 677 RFCFLLS-TRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGS 737 (1272)
Q Consensus 677 ~~vfLlS-Tragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k-~V~Vyrlit~~T 737 (1272)
.. +|++ ++..|+|+|++.+|+||+++|.-+...++|++||++|.|..| .+.||.++-.-.
T Consensus 395 ~~-vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~~~ 456 (501)
T PHA02558 395 GI-IIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDDLS 456 (501)
T ss_pred Ce-EEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecccc
Confidence 23 4555 499999999999999999999999999999999999998765 689999996433
No 27
>PF06461 DUF1086: Domain of Unknown Function (DUF1086); InterPro: IPR009462 This entry represents several eukaryotic domains of unknown function, which are present in chromodomain helicase DNA binding proteins. This domain is often found in conjunction with IPR000330 from INTERPRO, IPR001650 from INTERPRO, IPR009463 from INTERPRO, IPR000953 from INTERPRO and IPR001965 from INTERPRO.
Probab=99.95 E-value=1.8e-28 Score=238.24 Aligned_cols=132 Identities=57% Similarity=0.958 Sum_probs=122.1
Q ss_pred CCCCCcccccccCCCCCCCCccccccchhccCCChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHHHh
Q 000811 937 PGRKPNKKRSRVDSMEPPPLMEGEGRSFRVLGFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFLTH 1016 (1272)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~pl~~~e~~~l~v~GF~~~~rr~Fv~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~lF~~~ 1016 (1272)
..+++++++.| ++.+++||++++++++.|+||+..||+.|++++||||+++++|.|+.++|.+||.+|+++|+.+||.|
T Consensus 10 ~~r~~~rkk~r-~~~~~pPLm~~~g~~l~VlGFn~rQR~~Fln~vMR~G~~~f~~~w~~~~Lr~Ks~~ei~aY~~LFm~H 88 (145)
T PF06461_consen 10 TGRRPSRKKRR-DNKDPPPLMAGVGGQLEVLGFNPRQRKAFLNAVMRYGMGAFDWKWFVPRLRGKSEKEIRAYGSLFMRH 88 (145)
T ss_pred ccccccccccc-cCCCCCCccccCCCceEEeccCHHHHHHHHHHHHHHCcCcccchHHhhhhccccHHHHHHHHHHHHHH
Confidence 44556666665 55567999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC-CCCccCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccc
Q 000811 1017 ITEDITD-SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTD 1069 (1272)
Q Consensus 1017 ~~E~i~d-~~~~~d~i~k~~~k~~~vl~ri~~~~ll~~Kv~~~~~~p~~~~~~~ 1069 (1272)
+||+++| +++|+|||||+++++++||+||++|+||++||++|+.+|..+.||.
T Consensus 89 L~E~~~d~s~tfsDGVPkEgl~~q~VL~RIgvm~LIr~KV~e~e~~ng~~s~p~ 142 (145)
T PF06461_consen 89 LCEPGTDNSDTFSDGVPKEGLRRQDVLVRIGVMSLIRKKVQEFEHINGTWSFPE 142 (145)
T ss_pred hcCCCcCCCCccCCCCccCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCccCch
Confidence 9999988 8999999999999999999999999999999999999998887763
No 28
>PTZ00110 helicase; Provisional
Probab=99.92 E-value=5.6e-23 Score=254.27 Aligned_cols=318 Identities=17% Similarity=0.258 Sum_probs=215.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHH-HHHHHHhhC-----CCC-cEEEEecC-ccHHHHHHHHHHHC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGE-----RIS-PHLVVAPL-STLRNWEREFATWA 356 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqai-a~l~~l~~~-----~~~-p~LIVvP~-sll~qW~~E~~~~~ 356 (1272)
++.|+|.+++..+ ..+.++|+..+||+|||++.+ ..+..+... ..+ .+|||||+ .+..|+..++.++.
T Consensus 152 ~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 152 EPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 5889999998765 578899999999999999864 344444332 123 47999996 56688999999887
Q ss_pred C--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--ccCCCcceeE
Q 000811 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1272)
Q Consensus 357 p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~L~~~~w~~v 432 (1272)
. .+++.+.+|....+..+... ....+|+|+|++.+..... .+.--...+|
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l--------------------------~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~l 281 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYAL--------------------------RRGVEILIACPGRLIDFLESNVTNLRRVTYL 281 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHH--------------------------HcCCCEEEECHHHHHHHHHcCCCChhhCcEE
Confidence 4 35566666655443322221 1246899999988754321 1222356789
Q ss_pred EeccccccCCcc--hHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
||||||++-... ..+...+..+.. ...+++|||.- .++-.+..
T Consensus 282 ViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p----~~v~~l~~------------------------------ 327 (545)
T PTZ00110 282 VLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP----KEVQSLAR------------------------------ 327 (545)
T ss_pred EeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----HHHHHHHH------------------------------
Confidence 999999987543 234445555543 45688999951 11111100
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
.++ ...| ..+.+.... ... . . .+++ ..+
T Consensus 328 ~l~-------------~~~~----v~i~vg~~~--l~~---------------~-~---------~i~q---~~~----- 355 (545)
T PTZ00110 328 DLC-------------KEEP----VHVNVGSLD--LTA---------------C-H---------NIKQ---EVF----- 355 (545)
T ss_pred HHh-------------ccCC----EEEEECCCc--ccc---------------C-C---------CeeE---EEE-----
Confidence 000 0000 001110000 000 0 0 0000 000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
.+....|...|..+|..+...+.++|||++....++.|...|...|++...++|.++..+|..+++.
T Consensus 356 -------------~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~ 422 (545)
T PTZ00110 356 -------------VVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNE 422 (545)
T ss_pred -------------EEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHH
Confidence 0112335566667777766678899999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
|.++.. .+|++|.++++|||++.+++||+||.++++..++|++||++|.|.+..+ |.|++.+
T Consensus 423 F~~G~~---~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 423 FKTGKS---PIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred HhcCCC---cEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 987444 4899999999999999999999999999999999999999999986544 5566665
No 29
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=1.1e-22 Score=248.31 Aligned_cols=308 Identities=18% Similarity=0.165 Sum_probs=207.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
..++|+|.++++-+ ..++++++..+||+|||+..+.-+. .. .+..|||+|+ +++.++...+... ++.+.
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~~--~~~~lVi~P~~~L~~dq~~~l~~~--gi~~~ 79 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--CS--DGITLVISPLISLMEDQVLQLKAS--GIPAT 79 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--Hc--CCcEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 4678999999999999987543322 22 3478999996 6778888888865 45566
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh---hcc-CCCcceeEEecccc
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS---ASL-KPIKWQCMIVDEGH 438 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~---~~L-~~~~w~~vIvDEaH 438 (1272)
.+.|.........-..- .....++++++|++.+.... ..+ ......+|||||||
T Consensus 80 ~l~~~~~~~~~~~i~~~----------------------~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH 137 (470)
T TIGR00614 80 FLNSSQSKEQQKNVLTD----------------------LKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAH 137 (470)
T ss_pred EEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCc
Confidence 66665443321111000 01246789999999886533 223 34467899999999
Q ss_pred ccCCcch-------HHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHH
Q 000811 439 RLKNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1272)
Q Consensus 439 rlKn~~S-------~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1272)
++..... .+......+.....++|||||-.....++...+.+-.|..+... |
T Consensus 138 ~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s------~--------------- 196 (470)
T TIGR00614 138 CISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTS------F--------------- 196 (470)
T ss_pred ccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCC------C---------------
Confidence 9865432 12222233445678999999854333333333322222111000 0
Q ss_pred hhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000811 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1272)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~ 591 (1272)
.-|.. .+.+.-.
T Consensus 197 ---------------~r~nl-~~~v~~~---------------------------------------------------- 208 (470)
T TIGR00614 197 ---------------DRPNL-YYEVRRK---------------------------------------------------- 208 (470)
T ss_pred ---------------CCCCc-EEEEEeC----------------------------------------------------
Confidence 00000 0000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000811 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1272)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn 671 (1272)
. +..+..+.+.+.+ ...|.++||||......+.|...|...|+.+..++|+++..+|..+++.|.
T Consensus 209 -~-------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~ 273 (470)
T TIGR00614 209 -T-------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQ 273 (470)
T ss_pred -C-------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHH
Confidence 0 0011111222221 134678899999999999999999999999999999999999999999998
Q ss_pred ccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 672 ~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
.+. ..+|++|.+.|+|||++.+++||+|+++.++..+.|++||++|.|+...+.+|
T Consensus 274 ~g~---~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 274 RDE---IQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred cCC---CcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 644 34899999999999999999999999999999999999999999988766554
No 30
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.91 E-value=2.8e-22 Score=245.58 Aligned_cols=315 Identities=18% Similarity=0.283 Sum_probs=211.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHH-HHHHHHhhCC--------CCcEEEEecC-ccHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqai-a~l~~l~~~~--------~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
.+.++|.+++..+ ..|.++|++..||+|||+..+ .++..+.... ....|||+|+ .+..|+.+.+..
T Consensus 109 ~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 109 YCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999876 678999999999999998864 3444444321 2368999996 666888888887
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--ccCCCcce
Q 000811 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQ 430 (1272)
Q Consensus 355 ~~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~L~~~~w~ 430 (1272)
+.. ++++..++|.......++.. ....++|+|+|++++..... .+.--...
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~-------------------------~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~ 239 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQL-------------------------EARFCDILVATPGRLLDFNQRGEVHLDMVE 239 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHH-------------------------hCCCCCEEEECHHHHHHHHHcCCcccccCc
Confidence 753 46778888875443332221 11357899999999864322 11112457
Q ss_pred eEEeccccccCCcc--hHHHHHHHhcc---cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000811 431 CMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1272)
Q Consensus 431 ~vIvDEaHrlKn~~--S~~~~~l~~l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1272)
+|||||||++.+.. ..+...+..+. ....+++|||.- +++.++. .. |
T Consensus 240 ~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~-~~~~~~~---~~---------------~--------- 291 (475)
T PRK01297 240 VMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFT-DDVMNLA---KQ---------------W--------- 291 (475)
T ss_pred eEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecC-HHHHHHH---HH---------------h---------
Confidence 89999999987543 22334444443 235789999952 1111110 00 0
Q ss_pred HHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000811 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1272)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L 585 (1272)
+ ..+ ..+.+.... .... . +. .|-+.
T Consensus 292 ------~---------------~~~---~~v~~~~~~-------------------~~~~--~-------~~---~~~~~ 316 (475)
T PRK01297 292 ------T---------------TDP---AIVEIEPEN-------------------VASD--T-------VE---QHVYA 316 (475)
T ss_pred ------c---------------cCC---EEEEeccCc-------------------CCCC--c-------cc---EEEEE
Confidence 0 000 001110000 0000 0 00 00000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q 000811 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~ 665 (1272)
+..+.|..+|..++.. ..+.++|||++....++.|...|...|+.+..++|.++..+|..
T Consensus 317 ------------------~~~~~k~~~l~~ll~~--~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~ 376 (475)
T PRK01297 317 ------------------VAGSDKYKLLYNLVTQ--NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIK 376 (475)
T ss_pred ------------------ecchhHHHHHHHHHHh--cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHH
Confidence 0112344445555433 23469999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
+++.|.++. ..+|++|.++++|||++.+++||+||.++++..++|+.||++|.|+...+ +-|++.+
T Consensus 377 ~~~~Fr~G~---~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~--i~~~~~~ 442 (475)
T PRK01297 377 TLEGFREGK---IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVS--ISFAGED 442 (475)
T ss_pred HHHHHhCCC---CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceE--EEEecHH
Confidence 999997644 34899999999999999999999999999999999999999999986543 3455443
No 31
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.91 E-value=2.3e-22 Score=244.91 Aligned_cols=309 Identities=16% Similarity=0.233 Sum_probs=205.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH-HHHhhCC-----C--CcEEEEecC-ccHHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER-----I--SPHLVVAPL-STLRNWEREFATW 355 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l-~~l~~~~-----~--~p~LIVvP~-sll~qW~~E~~~~ 355 (1272)
.+.|+|.+++.-+ ..+.++|+..+||+|||+..+..+ ..+.... . ..+|||||+ .+..||..++..+
T Consensus 23 ~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 23 EPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 5889999999766 568899999999999999865544 4443221 1 158999996 5668999999887
Q ss_pred CC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCccee
Q 000811 356 AP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1272)
Q Consensus 356 ~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~ 431 (1272)
.. .+.++.++|.......+... ...++|+|+|++.+.... ..+.--..++
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l--------------------------~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~ 152 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKL--------------------------RGGVDVLVATPGRLLDLEHQNAVKLDQVEI 152 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHH--------------------------cCCCcEEEEChHHHHHHHHcCCcccccceE
Confidence 63 45666667665433222110 135789999999885432 2222335679
Q ss_pred EEeccccccCCcc--hHHHHHHHhcccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 432 MIVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 432 vIvDEaHrlKn~~--S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
|||||||++-... ..+...+..+... ..+++|||+-. .+.++. ..+..+
T Consensus 153 lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~---~~~~~~------------------------ 204 (456)
T PRK10590 153 LVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALA---EKLLHN------------------------ 204 (456)
T ss_pred EEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHH---HHHcCC------------------------
Confidence 9999999986543 2333444445433 47899999621 111110 000000
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
|..+.-..... ..+........+
T Consensus 205 -----~~~i~~~~~~~--~~~~i~~~~~~~-------------------------------------------------- 227 (456)
T PRK10590 205 -----PLEIEVARRNT--ASEQVTQHVHFV-------------------------------------------------- 227 (456)
T ss_pred -----CeEEEEecccc--cccceeEEEEEc--------------------------------------------------
Confidence 00000000000 000000000000
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
....|..+|..++.. ....++|||+......+.|...|...++....++|.++..+|..+++
T Consensus 228 ----------------~~~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 228 ----------------DKKRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred ----------------CHHHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
Confidence 011122333333332 23468999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
.|.++. ..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.+..+.+
T Consensus 290 ~F~~g~---~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 290 DFKSGD---IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHcCC---CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEE
Confidence 998643 4489999999999999999999999999999999999999999998765443
No 32
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.91 E-value=2.2e-22 Score=245.79 Aligned_cols=313 Identities=17% Similarity=0.266 Sum_probs=215.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH-HHHHhhCCCC-cEEEEecC-ccHHHHHHHHHHHC---CC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERIS-PHLVVAPL-STLRNWEREFATWA---PQ 358 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~~~~-p~LIVvP~-sll~qW~~E~~~~~---p~ 358 (1272)
++.|+|.+++..+ ..+.+.|+..+||+|||...+.. +..+...... ..||+||+ .+..||..++..+. ++
T Consensus 26 ~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 26 EMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 5889999999877 57889999999999999875444 4444322223 68999996 66689999888764 57
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--ccCCCcceeEEecc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~L~~~~w~~vIvDE 436 (1272)
.++..++|.......+... ....+|+|+|++.+..... .+.--.+++||+||
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l--------------------------~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDE 155 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSL--------------------------EHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDE 155 (460)
T ss_pred cEEEEEECCCChHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEEC
Confidence 8888888876554333221 1357899999998865322 22223568999999
Q ss_pred ccccCCcc--hHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 437 GHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
||++-... ..+...+..+.. ...+++|||+-. ++-.+..
T Consensus 156 ad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~----~~~~l~~---------------------------------- 197 (460)
T PRK11776 156 ADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE----GIAAISQ---------------------------------- 197 (460)
T ss_pred HHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH----HHHHHHH----------------------------------
Confidence 99986543 334444444443 357899999721 1000000
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
.++ .-| ..+.+..... . . . +. .+.+.
T Consensus 198 ~~~----------~~~----~~i~~~~~~~-------------------~-~--~-------i~---~~~~~-------- 223 (460)
T PRK11776 198 RFQ----------RDP----VEVKVESTHD-------------------L-P--A-------IE---QRFYE-------- 223 (460)
T ss_pred Hhc----------CCC----EEEEECcCCC-------------------C-C--C-------ee---EEEEE--------
Confidence 000 000 0011100000 0 0 0 00 00000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
+....|+..|..++... .+.++||||+....++.|.+.|...|+.+..++|+++..+|+.+++.|.++
T Consensus 224 ----------~~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g 291 (460)
T PRK11776 224 ----------VSPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR 291 (460)
T ss_pred ----------eCcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 01122666677776542 456899999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
.. .+|++|.++++|||++++++||+||.+.++..++|++||++|.|+... .|.|++.+
T Consensus 292 ~~---~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l~~~~ 349 (460)
T PRK11776 292 SC---SVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSLVAPE 349 (460)
T ss_pred CC---cEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEEEchh
Confidence 43 489999999999999999999999999999999999999999997644 45566554
No 33
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.90 E-value=2.8e-22 Score=247.31 Aligned_cols=315 Identities=16% Similarity=0.199 Sum_probs=208.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH-HHHHhhC--------CCCcEEEEecC-ccHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE--------RISPHLVVAPL-STLRNWEREFA 353 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~--------~~~p~LIVvP~-sll~qW~~E~~ 353 (1272)
..+.|+|.+++..+ ..|+++|+..+||+|||+..+.. +..+... .....|||+|+ .+..|+.+++.
T Consensus 142 ~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~ 217 (518)
T PLN00206 142 EFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAK 217 (518)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHH
Confidence 36889999999776 57899999999999999986443 4443321 12268999996 56678888888
Q ss_pred HHCCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcc
Q 000811 354 TWAPQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKW 429 (1272)
Q Consensus 354 ~~~p~--~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w 429 (1272)
.+... ++++.+.|.......+... ...++|+|+|++.+.... ..+.--..
T Consensus 218 ~l~~~~~~~~~~~~gG~~~~~q~~~l--------------------------~~~~~IiV~TPgrL~~~l~~~~~~l~~v 271 (518)
T PLN00206 218 VLGKGLPFKTALVVGGDAMPQQLYRI--------------------------QQGVELIVGTPGRLIDLLSKHDIELDNV 271 (518)
T ss_pred HHhCCCCceEEEEECCcchHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccchhe
Confidence 77643 4555555544332222110 135789999998875421 12222345
Q ss_pred eeEEeccccccCCcc--hHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000811 430 QCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1272)
.+|||||||++...+ ..+...+..+.....+++|||.-. .+. .+...+..+
T Consensus 272 ~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~v~---~l~~~~~~~----------------------- 324 (518)
T PLN00206 272 SVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-EVE---KFASSLAKD----------------------- 324 (518)
T ss_pred eEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-HHH---HHHHHhCCC-----------------------
Confidence 789999999986532 344555566666788999999621 111 111100000
Q ss_pred HHHHhhhhhHHHHHhhHhhcCCCc--eeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000811 508 LHRMLAPHLLRRVKKDVMKELPPK--KELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1272)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k--~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L 585 (1272)
+..+.. .. ...|.. ....+.+.
T Consensus 325 ------~~~i~~-~~---~~~~~~~v~q~~~~~~---------------------------------------------- 348 (518)
T PLN00206 325 ------IILISI-GN---PNRPNKAVKQLAIWVE---------------------------------------------- 348 (518)
T ss_pred ------CEEEEe-CC---CCCCCcceeEEEEecc----------------------------------------------
Confidence 000000 00 000000 00111111
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-CCCcEEEEeCCCCHHHHH
Q 000811 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQ 664 (1272)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~Rq 664 (1272)
...|...|..+|........++|||++.....+.|...|.. .|+.+..++|+++..+|.
T Consensus 349 --------------------~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~ 408 (518)
T PLN00206 349 --------------------TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERR 408 (518)
T ss_pred --------------------chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHH
Confidence 11122334444444333346899999999999999999974 699999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
.+++.|.++.. -+|++|.++++|||++.+++||+||++.++..++|++||++|.|.... ++.|++.+
T Consensus 409 ~il~~Fr~G~~---~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 409 EVMKSFLVGEV---PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred HHHHHHHCCCC---CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 99999987544 489999999999999999999999999999999999999999997644 44456543
No 34
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.90 E-value=2.4e-21 Score=234.77 Aligned_cols=405 Identities=18% Similarity=0.241 Sum_probs=238.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCC-CcEEEEecCc-cHHHHHHHHHHHCCCCeE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPLS-TLRNWEREFATWAPQMNV 361 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-~p~LIVvP~s-ll~qW~~E~~~~~p~~~v 361 (1272)
..||+||.+-+.-. . ++|+|+|.+||+|||..|+.++...++... ++++++||+. ++.|....|...+-...+
T Consensus 61 ~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~ 135 (746)
T KOG0354|consen 61 LELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSV 135 (746)
T ss_pred ccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccc
Confidence 57999999987644 3 899999999999999999888887776544 5999999975 556667778777644566
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCC---CcceeEEecccc
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP---IKWQCMIVDEGH 438 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~---~~w~~vIvDEaH 438 (1272)
....|+...+.-.. .-....+|++.|++++..+...... -.|.++||||||
T Consensus 136 T~~l~~~~~~~~r~--------------------------~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~H 189 (746)
T KOG0354|consen 136 TGQLGDTVPRSNRG--------------------------EIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECH 189 (746)
T ss_pred eeeccCccCCCchh--------------------------hhhcccceEEeChHhhhhhcccccccccceEEEEEEcccc
Confidence 66666533321110 0123567999999999887443322 348999999999
Q ss_pred ccCCcc--hHHHHHHHhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCC-CCChHHHHHHHhh------------hhh
Q 000811 439 RLKNKD--SKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGK-FGSLEEFQEEFKD------------INQ 501 (1272)
Q Consensus 439 rlKn~~--S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~-f~~~~~F~~~f~~------------~~~ 501 (1272)
|..... +...+.+...+ ....|+|||||- ++.....+.+.=|.-.. ......-...|.. ...
T Consensus 190 ra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~ 268 (746)
T KOG0354|consen 190 RTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCE 268 (746)
T ss_pred cccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhh
Confidence 985543 33444444443 236789999997 66666655554443321 0011111222211 111
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecC-------------CHHHHH-HHHHHHHHH-HHHHHhcCCch
Q 000811 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVEL-------------SSKQKE-YYKAILTRN-YQILTRRGGAQ 566 (1272)
Q Consensus 502 ~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~l-------------s~~Q~~-~Y~~il~~~-~~~l~~~~~~~ 566 (1272)
......|..+++|++.+--... |.+.....-..+. -..|+- +|..++... ...+...+ -
T Consensus 269 ~~~~~~f~~~i~p~l~~l~~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~g-i- 342 (746)
T KOG0354|consen 269 RDIEDPFGMIIEPLLQQLQEEG----LIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDG-I- 342 (746)
T ss_pred hhhhhhHHHHHHHHHHHHHhcC----ccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcc-h-
Confidence 2334566777777765433222 2111100000000 001110 111111110 01111000 0
Q ss_pred hhHHHHHHHHHHHhCCc----ccccCCCCCc-ccchH---HHHHHH----hhhhHHHHHHHHHHHHHHc--CceEEEEec
Q 000811 567 ISLINVVMELRKLCCHP----YMLEGVEPDI-EDTNE---SFKQLL----ESSGKLQLLDKMMVKLKEQ--GHRVLIYSQ 632 (1272)
Q Consensus 567 ~~l~~~l~~Lrk~c~hP----~L~~~~e~~~-~~~~~---~~~~li----~~S~Kl~~L~klL~~l~~~--g~KVLIFsq 632 (1272)
.+.+.+..+.....-- |+....+... ..... .+..+. ...+|+..|.++|....+. ..|+|||+.
T Consensus 343 -r~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve 421 (746)
T KOG0354|consen 343 -RFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVE 421 (746)
T ss_pred -hhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEe
Confidence 0111111110000000 0000000000 00000 011111 2367999999998877654 479999999
Q ss_pred chhhHHHHHHHHH-h--CCCcEEEEeC--------CCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE
Q 000811 633 FQHMLDLLEDYLT-F--KKWQYERIDG--------KVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII 701 (1272)
Q Consensus 633 ~~~~ldiL~~~L~-~--~g~~~~ridG--------~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi 701 (1272)
+...++.|..+|. . -|++...+-| ++++.+.+++|+.|+++... +|++|..|.+|||++.||.||.
T Consensus 422 ~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~N---vLVATSV~EEGLDI~ec~lVIc 498 (746)
T KOG0354|consen 422 TRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEIN---VLVATSVAEEGLDIGECNLVIC 498 (746)
T ss_pred hHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCcc---EEEEecchhccCCcccccEEEE
Confidence 9999999999997 2 2455555555 46788899999999885554 8999999999999999999999
Q ss_pred ecCCCChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000811 702 YDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1272)
Q Consensus 702 ~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit 734 (1272)
||..-||-..+||+|| +| ++.-.++.|.+
T Consensus 499 Yd~~snpIrmIQrrGR-gR---a~ns~~vll~t 527 (746)
T KOG0354|consen 499 YDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT 527 (746)
T ss_pred ecCCccHHHHHHHhcc-cc---ccCCeEEEEEc
Confidence 9999999999999999 66 44445555555
No 35
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.90 E-value=8.9e-22 Score=238.85 Aligned_cols=312 Identities=16% Similarity=0.204 Sum_probs=207.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH-HHHHhhC-----CCCcEEEEecC-ccHHHHHHHHHHHC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGE-----RISPHLVVAPL-STLRNWEREFATWA 356 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~-----~~~p~LIVvP~-sll~qW~~E~~~~~ 356 (1272)
.+++++|.+++..+ ..+.++|+...+|+|||+.++.. +..+... +...+||++|. .+..|+.+.+..+.
T Consensus 22 ~~p~~iQ~~ai~~~----~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPA----LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 35889999998766 46788999999999999986544 3444321 12378999996 46678877777665
Q ss_pred C--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeE
Q 000811 357 P--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCM 432 (1272)
Q Consensus 357 p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~v 432 (1272)
. ++++..++|........... ...++|+|+|++.+.... ..+..-.+++|
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~l 151 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVF--------------------------SENQDIVVATPGRLLQYIKEENFDCRAVETL 151 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCcCcccCCEE
Confidence 3 57788888875443221110 135689999998876432 22333456789
Q ss_pred EeccccccCCcc--hHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
||||||++-... ..+...+..+. ....+++|||+-...+.++. ..+
T Consensus 152 ViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~------------------~~~------------- 200 (434)
T PRK11192 152 ILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFA------------------ERL------------- 200 (434)
T ss_pred EEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHH------------------HHH-------------
Confidence 999999986543 22223333333 23568999997311111110 000
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
+ .... .+.+....... ....|-+...
T Consensus 201 --~----------------~~~~--~i~~~~~~~~~--------------------------------~~i~~~~~~~-- 226 (434)
T PRK11192 201 --L----------------NDPV--EVEAEPSRRER--------------------------------KKIHQWYYRA-- 226 (434)
T ss_pred --c----------------cCCE--EEEecCCcccc--------------------------------cCceEEEEEe--
Confidence 0 0000 01111000000 0000000000
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
. ....|..+|..++.. ....++|||+.....++.|...|...|+.+..++|.++..+|..+++.
T Consensus 227 -----~---------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~ 290 (434)
T PRK11192 227 -----D---------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKR 290 (434)
T ss_pred -----C---------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHH
Confidence 0 012345555555542 245799999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
|.++. +.+|++|.++++|||++.+++||+||+++++..++|++||++|.|....+.+
T Consensus 291 f~~G~---~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 291 LTDGR---VNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred HhCCC---CcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 98643 4589999999999999999999999999999999999999999998765544
No 36
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=3.5e-22 Score=241.45 Aligned_cols=313 Identities=16% Similarity=0.211 Sum_probs=210.1
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH-HHHhhCC--------CCcEEEEecC-ccHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l-~~l~~~~--------~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
.+.|.|.+++.-+ ..+.++|+..+||+|||+..+..+ ..+.... ...+|||||+ .+..|+.+++..
T Consensus 30 ~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 30 NCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 5789999998766 578999999999999999875444 3343211 1258999996 666888888877
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcce
Q 000811 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQ 430 (1272)
Q Consensus 355 ~~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~ 430 (1272)
+.. ++++..++|........... ...++|+|+|++.+.... ..+.--.+.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l--------------------------~~~~~IlV~TP~~l~~~l~~~~~~l~~v~ 159 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVL--------------------------ESGVDILIGTTGRLIDYAKQNHINLGAIQ 159 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCccccccc
Confidence 653 57777787765433222111 124689999999885432 223334578
Q ss_pred eEEeccccccCCcc--hHHHHHHHhccc---ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000811 431 CMIVDEGHRLKNKD--SKLFSSLKQYST---RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1272)
Q Consensus 431 ~vIvDEaHrlKn~~--S~~~~~l~~l~~---~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1272)
+|||||||++-... ..+...+..+.. ...+++|||.-. .+.++
T Consensus 160 ~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~------------------------------- 207 (423)
T PRK04837 160 VVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVREL------------------------------- 207 (423)
T ss_pred EEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHH-------------------------------
Confidence 99999999986543 233333444432 235789999621 11110
Q ss_pred HHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000811 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1272)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L 585 (1272)
... .+..... +.+.-.. .... . + .+.++
T Consensus 208 ------~~~------------~~~~p~~--i~v~~~~-------------------~~~~--~-------i----~~~~~ 235 (423)
T PRK04837 208 ------AFE------------HMNNPEY--VEVEPEQ-------------------KTGH--R-------I----KEELF 235 (423)
T ss_pred ------HHH------------HCCCCEE--EEEcCCC-------------------cCCC--c-------e----eEEEE
Confidence 000 0000000 0000000 0000 0 0 00000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q 000811 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~ 665 (1272)
. .....|+..|..++.. ....++|||++....++.|...|...|+++..++|.++..+|..
T Consensus 236 ~-----------------~~~~~k~~~l~~ll~~--~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 236 Y-----------------PSNEEKMRLLQTLIEE--EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred e-----------------CCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHH
Confidence 0 0112355566666544 23679999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
+++.|.++.. .+|++|.++++|||++.+++||+||+++++..|+|++||++|.|+.-.+ +-|++.
T Consensus 297 ~l~~F~~g~~---~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 297 ILEEFTRGDL---DILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred HHHHHHcCCC---cEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeE--EEEeCH
Confidence 9999987544 4899999999999999999999999999999999999999999977544 445544
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.89 E-value=1.7e-21 Score=242.04 Aligned_cols=308 Identities=17% Similarity=0.262 Sum_probs=207.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH-HHHhhCC--------CCcEEEEecC-ccHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFGER--------ISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l-~~l~~~~--------~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
.+.|.|..++..+ ..++++|+..+||+|||+.++..+ ..+.... ...+|||+|+ .+..|+...+.+
T Consensus 31 ~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 31 RCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 5889999999877 578999999999999999875544 4443211 1378999996 666889999988
Q ss_pred HCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh---ccCCCcc
Q 000811 355 WAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA---SLKPIKW 429 (1272)
Q Consensus 355 ~~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~---~L~~~~w 429 (1272)
|.. .+++..++|........... ...++|+|+|++.+..... .+.....
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l--------------------------~~~~dIiV~TP~rL~~~l~~~~~~~l~~v 160 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELL--------------------------QQGVDVIIATPGRLIDYVKQHKVVSLHAC 160 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHH--------------------------hCCCCEEEECHHHHHHHHHhccccchhhe
Confidence 874 35677777765433221110 1257899999998865422 2333356
Q ss_pred eeEEeccccccCCcc--hHHHHHHHhcc---cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000811 430 QCMIVDEGHRLKNKD--SKLFSSLKQYS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~--S~~~~~l~~l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~ 504 (1272)
.+|||||||++-... ..+...+..+. ....+++|||.- +.+.++. .
T Consensus 161 ~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~-~~v~~l~---~------------------------- 211 (572)
T PRK04537 161 EICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLS-HRVLELA---Y------------------------- 211 (572)
T ss_pred eeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCcc-HHHHHHH---H-------------------------
Confidence 789999999985432 22333344443 345789999951 1111110 0
Q ss_pred HHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeec-CCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCc
Q 000811 505 ISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVE-LSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1272)
Q Consensus 505 i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~-ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP 583 (1272)
.++. -|. ...+... .+. ..++ |-
T Consensus 212 ---------~~l~----------~p~--~i~v~~~~~~~-------------------------------~~i~----q~ 235 (572)
T PRK04537 212 ---------EHMN----------EPE--KLVVETETITA-------------------------------ARVR----QR 235 (572)
T ss_pred ---------HHhc----------CCc--EEEeccccccc-------------------------------ccee----EE
Confidence 0000 000 0000000 000 0000 00
Q ss_pred ccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q 000811 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAER 663 (1272)
Q Consensus 584 ~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~R 663 (1272)
+.+. ....|+..|..++.. ..+.++|||++....++.|.+.|...++.+..++|+++..+|
T Consensus 236 ~~~~-----------------~~~~k~~~L~~ll~~--~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR 296 (572)
T PRK04537 236 IYFP-----------------ADEEKQTLLLGLLSR--SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKR 296 (572)
T ss_pred EEec-----------------CHHHHHHHHHHHHhc--ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 0000 012244444445443 347899999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 664 q~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
..+++.|.++. ..+||+|.++++|||++.+++||+||.++++..++|++||++|.|....+..
T Consensus 297 ~~il~~Fr~G~---~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 297 ESLLNRFQKGQ---LEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred HHHHHHHHcCC---CeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEE
Confidence 99999997643 4589999999999999999999999999999999999999999998755443
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.89 E-value=3.6e-21 Score=240.41 Aligned_cols=310 Identities=16% Similarity=0.218 Sum_probs=210.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHH-HHHHHHhhCCC-CcEEEEecC-ccHHHHHHHHHHHC---C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSI-AFLASLFGERI-SPHLVVAPL-STLRNWEREFATWA---P 357 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqai-a~l~~l~~~~~-~p~LIVvP~-sll~qW~~E~~~~~---p 357 (1272)
.++.|+|.+++..+ ..+.++|+..+||+|||++.+ .++..+..... ..+|||||+ .+..||..++..+. +
T Consensus 27 ~~ptpiQ~~ai~~l----l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHL----LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 36899999999776 467899999999999999864 44444433322 368999996 66689999887764 6
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEec
Q 000811 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvD 435 (1272)
.++++.++|.......+... ....+|||+|++.+.... ..+.--...+||||
T Consensus 103 ~i~v~~~~gG~~~~~q~~~l--------------------------~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlD 156 (629)
T PRK11634 103 GVNVVALYGGQRYDVQLRAL--------------------------RQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLD 156 (629)
T ss_pred CceEEEEECCcCHHHHHHHh--------------------------cCCCCEEEECHHHHHHHHHcCCcchhhceEEEec
Confidence 78888888876543332221 124689999998886432 22222356789999
Q ss_pred cccccCCcc--hHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHh
Q 000811 436 EGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1272)
Q Consensus 436 EaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L 512 (1272)
|||.+-+.. ..+...+..+.. ...+++|||.- ..+.++.
T Consensus 157 EAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p-~~i~~i~------------------------------------- 198 (629)
T PRK11634 157 EADEMLRMGFIEDVETIMAQIPEGHQTALFSATMP-EAIRRIT------------------------------------- 198 (629)
T ss_pred cHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCC-hhHHHHH-------------------------------------
Confidence 999886543 334455555543 34688999951 1111100
Q ss_pred hhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000811 513 APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1272)
Q Consensus 513 ~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~ 592 (1272)
..|+ .... .+.+.-. ..... ...+-|..
T Consensus 199 ~~~l------------~~~~--~i~i~~~---------------------~~~~~-----------~i~q~~~~------ 226 (629)
T PRK11634 199 RRFM------------KEPQ--EVRIQSS---------------------VTTRP-----------DISQSYWT------ 226 (629)
T ss_pred HHHc------------CCCe--EEEccCc---------------------cccCC-----------ceEEEEEE------
Confidence 0000 0000 0100000 00000 00000000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 000811 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1272)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~ 672 (1272)
+....|...|..+|.. ....++||||......+.|...|...|+....++|.++..+|..+++.|..
T Consensus 227 -----------v~~~~k~~~L~~~L~~--~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~ 293 (629)
T PRK11634 227 -----------VWGMRKNEALVRFLEA--EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKD 293 (629)
T ss_pred -----------echhhHHHHHHHHHHh--cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhC
Confidence 0112244555555543 234689999999999999999999999999999999999999999999976
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
+. ..+||+|.+++.|||++.+++||+||.+.++..++|++||++|.|....+.+
T Consensus 294 G~---~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 294 GR---LDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred CC---CCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 43 4489999999999999999999999999999999999999999997654443
No 39
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.89 E-value=3.5e-21 Score=241.87 Aligned_cols=304 Identities=19% Similarity=0.216 Sum_probs=209.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
.+++|+|.++++-+ ..+++++++.+||.|||+.+...+. .. .+.+|||+|+ +++.++...+... +..+.
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpal--~~--~g~~lVisPl~sL~~dq~~~l~~~--gi~~~ 81 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPAL--LL--KGLTVVISPLISLMKDQVDQLRAA--GVAAA 81 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHHH--Hc--CCcEEEEcCCHHHHHHHHHHHHHc--CCcEE
Confidence 46999999999876 5678999999999999998753332 22 3578999996 6778888888875 46676
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeEEecccccc
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~vIvDEaHrl 440 (1272)
.++++........-.. .......+++++|++.+... ...+......+|||||||.+
T Consensus 82 ~~~s~~~~~~~~~~~~----------------------~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i 139 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEK----------------------ALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCV 139 (591)
T ss_pred EEeCCCCHHHHHHHHH----------------------HHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccc
Confidence 6776644322111100 00124578999999988542 23455567899999999998
Q ss_pred CCcch-------HHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 441 KNKDS-------KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 441 Kn~~S-------~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
...+. .+......+.....++||||+-.....++...+.+-.+..+... |
T Consensus 140 ~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~------~----------------- 196 (591)
T TIGR01389 140 SQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITS------F----------------- 196 (591)
T ss_pred ccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecC------C-----------------
Confidence 64332 22333334445568999999854443333333222111111000 0
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
.-|.....++.
T Consensus 197 -------------~r~nl~~~v~~-------------------------------------------------------- 207 (591)
T TIGR01389 197 -------------DRPNLRFSVVK-------------------------------------------------------- 207 (591)
T ss_pred -------------CCCCcEEEEEe--------------------------------------------------------
Confidence 00000000000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
...+...+..++... .+.++||||......+.|..+|...|+++..++|+++.++|..+++.|..+
T Consensus 208 ------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g 273 (591)
T TIGR01389 208 ------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD 273 (591)
T ss_pred ------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 001122233333321 267899999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
. +.+|++|.+.|.|||++.+++||+|+++.|+..+.|++||++|.|+...+.
T Consensus 274 ~---~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~i 325 (591)
T TIGR01389 274 D---VKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAI 325 (591)
T ss_pred C---CcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEE
Confidence 4 458999999999999999999999999999999999999999999766554
No 40
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.89 E-value=3.9e-21 Score=226.92 Aligned_cols=313 Identities=19% Similarity=0.271 Sum_probs=225.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhh------CCCCc-EEEEecCc-cHHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG------ERISP-HLVVAPLS-TLRNWEREFATW 355 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~------~~~~p-~LIVvP~s-ll~qW~~E~~~~ 355 (1272)
.+.|-|..+.-.+ ..|+++|....+|+|||+.. |-.+.++.. .+.+| +||++|+- +..|-..++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 4667777775444 57899999999999999984 566666664 12245 89999974 557788888888
Q ss_pred CCCCe--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCccee
Q 000811 356 APQMN--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQC 431 (1272)
Q Consensus 356 ~p~~~--vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~ 431 (1272)
...+. .++++|.......+++. ....+|+|+|+..+.... ..+.--...+
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l--------------------------~~gvdiviaTPGRl~d~le~g~~~l~~v~y 242 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDL--------------------------ERGVDVVIATPGRLIDLLEEGSLNLSRVTY 242 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHH--------------------------hcCCcEEEeCChHHHHHHHcCCccccceeE
Confidence 86554 77777776665555543 236789999999886542 3344446779
Q ss_pred EEeccccccCC--cchHHHHHHHhc-ccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000811 432 MIVDEGHRLKN--KDSKLFSSLKQY-STR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1272)
Q Consensus 432 vIvDEaHrlKn--~~S~~~~~l~~l-~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1272)
+|+|||.++-. ...++.+.+..+ .+. ..|+-|||= +
T Consensus 243 lVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saTw--------------------p-------------------- 282 (519)
T KOG0331|consen 243 LVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSATW--------------------P-------------------- 282 (519)
T ss_pred EEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeeec--------------------c--------------------
Confidence 99999999854 567888888888 444 367778873 0
Q ss_pred HHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000811 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1272)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~ 587 (1272)
--+|.+..+.+. -+....+.... .+ .....+.++-.
T Consensus 283 -------~~v~~lA~~fl~--~~~~i~ig~~~---~~-----------------------~a~~~i~qive--------- 318 (519)
T KOG0331|consen 283 -------KEVRQLAEDFLN--NPIQINVGNKK---EL-----------------------KANHNIRQIVE--------- 318 (519)
T ss_pred -------HHHHHHHHHHhc--CceEEEecchh---hh-----------------------hhhcchhhhhh---------
Confidence 011122222222 11111111110 00 00001111111
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH-HcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 000811 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK-EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1272)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~-~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~ 666 (1272)
.+....|...|.++|.... ..+.||||||+.....+.|+..|...+|+..-|+|..++.+|..+
T Consensus 319 ---------------~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~ 383 (519)
T KOG0331|consen 319 ---------------VCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWV 383 (519)
T ss_pred ---------------hcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHH
Confidence 1224568888888888876 445699999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
++.|..+.+ -+|++|.+++.|||++.+++||.||+|-|...|++|+||.+|.|++-....
T Consensus 384 L~~FreG~~---~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 384 LKGFREGKS---PVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHhcccCCc---ceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEE
Confidence 999976554 499999999999999999999999999999999999999999888865543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.88 E-value=4.7e-21 Score=240.33 Aligned_cols=304 Identities=18% Similarity=0.175 Sum_probs=204.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
..++|+|.+++.-+ ..+.++++..+||.|||+..+..+. .. .+.+|||+|+ +++.++...+... +..+.
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~~--~g~tlVisPl~sL~~dqv~~l~~~--gi~~~ 93 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--VL--DGLTLVVSPLISLMKDQVDQLLAN--GVAAA 93 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--Hc--CCCEEEEecHHHHHHHHHHHHHHc--CCcEE
Confidence 36999999999866 5788999999999999987643332 22 2479999996 6778888888765 45555
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeEEecccccc
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGHRL 440 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~vIvDEaHrl 440 (1272)
.+.+..........+.- ......+++++|++.+... ...+....+++|||||||++
T Consensus 94 ~~~s~~~~~~~~~~~~~----------------------~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i 151 (607)
T PRK11057 94 CLNSTQTREQQLEVMAG----------------------CRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCI 151 (607)
T ss_pred EEcCCCCHHHHHHHHHH----------------------HhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccc
Confidence 55554432221111100 0123567899999987642 23344557789999999998
Q ss_pred CCcch---HHHHHH----HhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 441 KNKDS---KLFSSL----KQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 441 Kn~~S---~~~~~l----~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
..... ..+..+ ..+.....++||||+-.....++...+.+-.|..+... |
T Consensus 152 ~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~------~----------------- 208 (607)
T PRK11057 152 SQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS------F----------------- 208 (607)
T ss_pred ccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC------C-----------------
Confidence 65332 112222 23345568999999854443343333322221110000 0
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
.-|.....++ .
T Consensus 209 -------------~r~nl~~~v~--------------------------------------------------~------ 219 (607)
T PRK11057 209 -------------DRPNIRYTLV--------------------------------------------------E------ 219 (607)
T ss_pred -------------CCCcceeeee--------------------------------------------------e------
Confidence 0000000000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
...++..|...+.. ..+.++||||+.....+.+...|...|+++..++|+++..+|..+++.|..+
T Consensus 220 ------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g 285 (607)
T PRK11057 220 ------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD 285 (607)
T ss_pred ------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC
Confidence 00011112222221 3578999999999999999999999999999999999999999999999764
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
. ..+|++|.++|.|||++.+++||+||.+.++..+.|++||++|.|....+.
T Consensus 286 ~---~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~i 337 (607)
T PRK11057 286 D---LQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAM 337 (607)
T ss_pred C---CCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEE
Confidence 4 348999999999999999999999999999999999999999999775544
No 42
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=5.8e-22 Score=223.85 Aligned_cols=342 Identities=17% Similarity=0.316 Sum_probs=236.1
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc-HHHHHHHHHHHCC--C
Q 000811 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAP--Q 358 (1272)
Q Consensus 282 ~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~p--~ 358 (1272)
+..++||||...++-|. .-...+.||+.-++|.|||+..+..+..+. +.+||+|..++ +.||...|..|.. +
T Consensus 299 Pst~iRpYQEksL~KMF-GNgRARSGiIVLPCGAGKtLVGvTAa~tik----K~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMF-GNGRARSGIIVLPCGAGKTLVGVTAACTIK----KSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred cccccCchHHHHHHHHh-CCCcccCceEEEecCCCCceeeeeeeeeec----ccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 34689999999998772 112335699999999999998877666442 47899999755 7999999999982 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----------hhccCCCc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----------SASLKPIK 428 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----------~~~L~~~~ 428 (1272)
-.+..|+.+..++. .....|+||||.|+..- ..+|....
T Consensus 374 ~~i~rFTsd~Ke~~-------------------------------~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~E 422 (776)
T KOG1123|consen 374 DQICRFTSDAKERF-------------------------------PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGRE 422 (776)
T ss_pred cceEEeeccccccC-------------------------------CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCe
Confidence 34555555443321 23566999999998432 45688889
Q ss_pred ceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhc-CCCCCChHHHHHHHhhhhhHHHHHH
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLD-AGKFGSLEEFQEEFKDINQEEQISR 507 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~-p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1272)
|.++|+||+|-+- .....+.+..+.+..+|+||||-+... |-..=||||- |..+. ..+ ..
T Consensus 423 WGllllDEVHvvP--A~MFRRVlsiv~aHcKLGLTATLvRED--dKI~DLNFLIGPKlYE------AnW---------md 483 (776)
T KOG1123|consen 423 WGLLLLDEVHVVP--AKMFRRVLSIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYE------ANW---------MD 483 (776)
T ss_pred eeeEEeehhccch--HHHHHHHHHHHHHHhhccceeEEeecc--ccccccceeecchhhh------ccH---------HH
Confidence 9999999999763 233444555567788999999986543 1122234443 32221 000 00
Q ss_pred HHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000811 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1272)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~ 587 (1272)
|.+ ...+.......|+|+||+. +|+..+..+... ..++
T Consensus 484 L~~--------------kGhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k--------r~lL----------------- 521 (776)
T KOG1123|consen 484 LQK--------------KGHIAKVQCAEVWCPMTPE---FYREYLRENTRK--------RMLL----------------- 521 (776)
T ss_pred HHh--------------CCceeEEeeeeeecCCCHH---HHHHHHhhhhhh--------hhee-----------------
Confidence 100 0123344566799999985 555544432110 0000
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q 000811 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1272)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I 667 (1272)
.+-+..|+....-|++....+|.|+||||..+-.|. .|--..|-+| |.|.|++.+|-+++
T Consensus 522 ---------------yvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk---~YAikl~Kpf--IYG~Tsq~ERm~IL 581 (776)
T KOG1123|consen 522 ---------------YVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALK---EYAIKLGKPF--IYGPTSQNERMKIL 581 (776)
T ss_pred ---------------eecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHH---HHHHHcCCce--EECCCchhHHHHHH
Confidence 112445777777788888889999999998876544 4444444454 78999999999999
Q ss_pred HHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhhhcCCC----CceEEEEEeeCCCHHHHH
Q 000811 668 DRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQT----NKVMIFRLITRGSIEERM 742 (1272)
Q Consensus 668 ~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW-Np~~~~Qa~gRahRiGQ~----k~V~Vyrlit~~TvEE~I 742 (1272)
+.|+..+.-.-+|| +++|...|+|+.|+++|-..+.. +-.+..|++||+.|.-.. -++..|-||+++|.|-.-
T Consensus 582 qnFq~n~~vNTIFl--SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 582 QNFQTNPKVNTIFL--SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred HhcccCCccceEEE--eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 99987555444444 79999999999999999999875 677899999999996533 268899999999987543
No 43
>PTZ00424 helicase 45; Provisional
Probab=99.88 E-value=6.8e-21 Score=228.89 Aligned_cols=317 Identities=18% Similarity=0.263 Sum_probs=206.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC--CCCcEEEEecC-ccHHHHHHHHHHHCC--C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE--RISPHLVVAPL-STLRNWEREFATWAP--Q 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~--~~~p~LIVvP~-sll~qW~~E~~~~~p--~ 358 (1272)
..+.|+|..++..+ ..+.+.|+..+||+|||+.++..+...... ....+|||+|. .+..|+.+.+...+. .
T Consensus 49 ~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 49 EKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 36899999999876 578899999999999999875554444432 22379999996 555777777776653 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEecc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvDE 436 (1272)
..+....|....+..+... ....+|+|+|++.+.... ..+.--.+++|||||
T Consensus 125 ~~~~~~~g~~~~~~~~~~~--------------------------~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDE 178 (401)
T PTZ00424 125 VRCHACVGGTVVRDDINKL--------------------------KAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDE 178 (401)
T ss_pred ceEEEEECCcCHHHHHHHH--------------------------cCCCCEEEECcHHHHHHHHhCCcccccccEEEEec
Confidence 4455556655443322211 123579999998875321 222233568999999
Q ss_pred ccccCCc--chHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 437 GHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 437 aHrlKn~--~S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
||++... ...+...++.+.. ...+++|||+- +...++.. .|. ..
T Consensus 179 ah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~~~------------------~~~--------------~~ 225 (401)
T PTZ00424 179 ADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMP-NEILELTT------------------KFM--------------RD 225 (401)
T ss_pred HHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCC-HHHHHHHH------------------HHc--------------CC
Confidence 9998543 2345555555543 45789999962 11111000 000 00
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
|..+ ..+.+- ..+.......+.+. .
T Consensus 226 ~~~~-~~~~~~-~~~~~~~~~~~~~~--~--------------------------------------------------- 250 (401)
T PTZ00424 226 PKRI-LVKKDE-LTLEGIRQFYVAVE--K--------------------------------------------------- 250 (401)
T ss_pred CEEE-EeCCCC-cccCCceEEEEecC--h---------------------------------------------------
Confidence 0000 000000 00000000000000 0
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
...++..+..++..+ ...++|||+.....++.+...|...++.+..++|.++..+|+.+++.|.++
T Consensus 251 ------------~~~~~~~l~~~~~~~--~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g 316 (401)
T PTZ00424 251 ------------EEWKFDTLCDLYETL--TITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG 316 (401)
T ss_pred ------------HHHHHHHHHHHHHhc--CCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 001122222222221 246899999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCC
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
. ..+|++|.++++|||++.+++||+||++.++..++|++||++|.|.. ..++.|++...
T Consensus 317 ~---~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~--G~~i~l~~~~~ 375 (401)
T PTZ00424 317 S---TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRK--GVAINFVTPDD 375 (401)
T ss_pred C---CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCC--ceEEEEEcHHH
Confidence 4 45899999999999999999999999999999999999999999865 44556776553
No 44
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.87 E-value=1.5e-20 Score=237.37 Aligned_cols=311 Identities=16% Similarity=0.151 Sum_probs=204.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
..+||+|.++++.+ ..|.++|+...||.|||+....-+.. . .+.+|||+|+ +|+.++...+... ++.+.
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~--~--~GiTLVISPLiSLmqDQV~~L~~~--GI~Aa 528 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI--C--PGITLVISPLVSLIQDQIMNLLQA--NIPAA 528 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH--c--CCcEEEEeCHHHHHHHHHHHHHhC--CCeEE
Confidence 47999999999876 57899999999999999886443332 1 3579999996 6666555555442 56677
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hhccCC----CcceeEEec
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKP----IKWQCMIVD 435 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d---~~~L~~----~~w~~vIvD 435 (1272)
.+.|............- .......++++++|++.+... ...+.. ....+||||
T Consensus 529 ~L~s~~s~~eq~~ilr~--------------------l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVID 588 (1195)
T PLN03137 529 SLSAGMEWAEQLEILQE--------------------LSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVID 588 (1195)
T ss_pred EEECCCCHHHHHHHHHH--------------------HHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccC
Confidence 67665443221111100 000124678999999987532 112211 236789999
Q ss_pred cccccCCcchH---HHHH----HHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 436 EGHRLKNKDSK---LFSS----LKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 436 EaHrlKn~~S~---~~~~----l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
|||++...+.. -+.. ...+.....++||||.-.....++...|.+..+..|.. .|
T Consensus 589 EAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~------Sf------------ 650 (1195)
T PLN03137 589 EAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQ------SF------------ 650 (1195)
T ss_pred cchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeec------cc------------
Confidence 99998654321 1222 22344556899999985544444444333221111100 00
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
.-|.....++. .. .
T Consensus 651 ------------------~RpNL~y~Vv~---k~--k------------------------------------------- 664 (1195)
T PLN03137 651 ------------------NRPNLWYSVVP---KT--K------------------------------------------- 664 (1195)
T ss_pred ------------------CccceEEEEec---cc--h-------------------------------------------
Confidence 00110000000 00 0
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
..+..|.+++... ..+...||||......+.|..+|...|++...++|+++..+|..+++
T Consensus 665 -------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe 724 (1195)
T PLN03137 665 -------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQK 724 (1195)
T ss_pred -------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHH
Confidence 0001111222111 12457899999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEE
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyr 731 (1272)
.|..+. +.+|++|.|+|.|||++.+++||+||.+.++..|.|++||++|.|+...+..|+
T Consensus 725 ~F~~Ge---i~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 725 QWSKDE---INIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHhcCC---CcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEe
Confidence 998744 348999999999999999999999999999999999999999999987665544
No 45
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.86 E-value=1.7e-20 Score=207.90 Aligned_cols=317 Identities=22% Similarity=0.290 Sum_probs=226.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHH-HHHHHHHHhhCCCC-cEEEEecCccHH-HHHHHHHHHC--CCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLR-NWEREFATWA--PQM 359 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiq-aia~l~~l~~~~~~-p~LIVvP~sll~-qW~~E~~~~~--p~~ 359 (1272)
.+.+-|.+++-.. ..|+.+|.+.|+|+|||.. +|-++..|+.+... ..||++|.--|. |-...|+... -++
T Consensus 83 ~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 83 KPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 4667888888665 6899999999999999998 67788888876544 579999986664 5555577764 468
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCC---cceeEEecc
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQCMIVDE 436 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~---~w~~vIvDE 436 (1272)
.+.++.|..+......+. ..++||+|.|+..+......-+.+ ...++|+||
T Consensus 159 r~~~lvGG~~m~~q~~~L--------------------------~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQL--------------------------SKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEEEEecCchHHHHHHHh--------------------------hcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 888999988766544332 247899999999987654432222 346799999
Q ss_pred ccccCCcc--hHHHHHHHhccccc-EEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 437 GHRLKNKD--SKLFSSLKQYSTRH-RVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l~~~~-rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
|.|+-|.. -.+...|+.+.... .+|.|||- ..+ +.+|...
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATM-t~k----------------------------------v~kL~ra-- 255 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATM-TKK----------------------------------VRKLQRA-- 255 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeec-chh----------------------------------hHHHHhh--
Confidence 99998865 46777777777554 46778883 111 1112100
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
.+-.. +.|.-+. .| .++-.|.+- ||+-.
T Consensus 256 -------------sl~~p----~~v~~s~----ky----------------------~tv~~lkQ~----ylfv~----- 283 (476)
T KOG0330|consen 256 -------------SLDNP----VKVAVSS----KY----------------------QTVDHLKQT----YLFVP----- 283 (476)
T ss_pred -------------ccCCC----eEEeccc----hh----------------------cchHHhhhh----eEecc-----
Confidence 01000 0010000 01 111112111 22211
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
..-|-..|..+|.++ .|..+||||......+.+.-+|+..|+....++|.++...|-.+++.|+++
T Consensus 284 ------------~k~K~~yLV~ll~e~--~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~ 349 (476)
T KOG0330|consen 284 ------------GKDKDTYLVYLLNEL--AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG 349 (476)
T ss_pred ------------ccccchhHHHHHHhh--cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc
Confidence 111334455566654 468999999999999999999999999999999999999999999999875
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHH
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvE 739 (1272)
.-+ +|++|++++.|+|.+.+|+||+||-|-+...|++|.||+.|.| +.-.+..||+...||
T Consensus 350 ~r~---iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve 410 (476)
T KOG0330|consen 350 ARS---ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAITLVTQYDVE 410 (476)
T ss_pred CCc---EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEEEEehhhhH
Confidence 544 8999999999999999999999999999999999999999999 556677899884443
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.86 E-value=9.7e-20 Score=236.20 Aligned_cols=322 Identities=19% Similarity=0.221 Sum_probs=201.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHH-HHHHHhhCC-------CCcEEEEecC-ccHHHHHHH---
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIA-FLASLFGER-------ISPHLVVAPL-STLRNWERE--- 351 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia-~l~~l~~~~-------~~p~LIVvP~-sll~qW~~E--- 351 (1272)
..|+|+|.+++..+ ..+.++|++.+||+|||+.++. ++..+.... ...+|+|+|+ .+..++.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45999999998766 6788999999999999998744 444454321 1258999996 555665543
Q ss_pred ----HHHHC-------CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh
Q 000811 352 ----FATWA-------PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD 420 (1272)
Q Consensus 352 ----~~~~~-------p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d 420 (1272)
+..++ |.+++.+.+|+.......+.. ....+|+|||++.+...
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l--------------------------~~~p~IlVtTPE~L~~l 160 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKML--------------------------KKPPHILITTPESLAIL 160 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHH--------------------------hCCCCEEEecHHHHHHH
Confidence 33342 467888888886543321110 12568999999998432
Q ss_pred h------hccCCCcceeEEeccccccCCcc--hHHHHHHHhc---c--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCC
Q 000811 421 S------ASLKPIKWQCMIVDEGHRLKNKD--SKLFSSLKQY---S--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFG 487 (1272)
Q Consensus 421 ~------~~L~~~~w~~vIvDEaHrlKn~~--S~~~~~l~~l---~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~ 487 (1272)
. ..|. ...+|||||+|.+.+.. ..+...+..+ . ...+++||||. .++.++.. ||......
T Consensus 161 l~~~~~~~~l~--~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl--~~~~~va~---~L~~~~~~ 233 (876)
T PRK13767 161 LNSPKFREKLR--TVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATI--EPLEEVAK---FLVGYEDD 233 (876)
T ss_pred hcChhHHHHHh--cCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEeccc--CCHHHHHH---HhcCcccc
Confidence 1 1222 34689999999987532 2233333332 2 34679999996 33333322 22111000
Q ss_pred ChHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchh
Q 000811 488 SLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQI 567 (1272)
Q Consensus 488 ~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~ 567 (1272)
. . -++..+ +...........+.++...
T Consensus 234 ~------------~----------~r~~~i------v~~~~~k~~~i~v~~p~~~------------------------- 260 (876)
T PRK13767 234 G------------E----------PRDCEI------VDARFVKPFDIKVISPVDD------------------------- 260 (876)
T ss_pred C------------C----------CCceEE------EccCCCccceEEEeccCcc-------------------------
Confidence 0 0 000000 0000000000000000000
Q ss_pred hHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-
Q 000811 568 SLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF- 646 (1272)
Q Consensus 568 ~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~- 646 (1272)
+..... ......+.+.|..+...++++|||++.....+.+...|..
T Consensus 261 -----------------l~~~~~----------------~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~ 307 (876)
T PRK13767 261 -----------------LIHTPA----------------EEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKR 307 (876)
T ss_pred -----------------cccccc----------------chhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHh
Confidence 000000 0000112234444455688999999999999999988875
Q ss_pred -----CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhc
Q 000811 647 -----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1272)
Q Consensus 647 -----~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRi 721 (1272)
.+..+..++|+++.++|..+.+.|.++. ..+|++|.++++|||++.+|+||+|+++.++..++|++||++|-
T Consensus 308 ~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~---i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 308 FPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE---LKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred chhhccccceeeeeCCCCHHHHHHHHHHHHcCC---CeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 2467899999999999999999997643 45899999999999999999999999999999999999999976
Q ss_pred -CCCCceEEEE
Q 000811 722 -GQTNKVMIFR 731 (1272)
Q Consensus 722 -GQ~k~V~Vyr 731 (1272)
|......++-
T Consensus 385 ~g~~~~g~ii~ 395 (876)
T PRK13767 385 LGEVSKGRIIV 395 (876)
T ss_pred CCCCCcEEEEE
Confidence 4545555554
No 47
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=5.5e-20 Score=240.01 Aligned_cols=357 Identities=17% Similarity=0.210 Sum_probs=207.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcC-CCceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEec-CccHHHHHHHHHHHCCCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSK-QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~-~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP-~sll~qW~~E~~~~~p~~ 359 (1272)
+..|||||.++++.+...+.. .++++|.+.||+|||+++++++..+... +.+++||||| ..++.||..+|..+.+..
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 357999999999877666554 4678999999999999999999888764 3469999999 577899999999864321
Q ss_pred e--EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh-------ccCCCcce
Q 000811 360 N--VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQ 430 (1272)
Q Consensus 360 ~--vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~-------~L~~~~w~ 430 (1272)
. +....+... +... .......|+|+|+.++.+... .+..-.|+
T Consensus 491 ~~~~~~i~~i~~----L~~~------------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fd 542 (1123)
T PRK11448 491 DQTFASIYDIKG----LEDK------------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYD 542 (1123)
T ss_pred ccchhhhhchhh----hhhh------------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCccc
Confidence 1 000111000 0000 001245799999999865321 12234688
Q ss_pred eEEeccccccCCc-----------------chHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHH
Q 000811 431 CMIVDEGHRLKNK-----------------DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 493 (1272)
Q Consensus 431 ~vIvDEaHrlKn~-----------------~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~ 493 (1272)
+||||||||.... .++..+.+..+. ..+|+|||||..+. .++|. .| .+.
T Consensus 543 lIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~FG-----~p-v~~------ 608 (1123)
T PRK11448 543 CIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEIFG-----EP-VYT------ 608 (1123)
T ss_pred EEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHHhC-----Ce-eEE------
Confidence 9999999996321 123333344343 58899999997432 11111 00 000
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEe----ecCC-HHHHHHHHHHHHHHHHHHHhcCCchhh
Q 000811 494 EEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILR----VELS-SKQKEYYKAILTRNYQILTRRGGAQIS 568 (1272)
Q Consensus 494 ~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~----v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~ 568 (1272)
..-.+.+. ..+++ ..-||....... +... ..+...|...... +....
T Consensus 609 -----Ysl~eAI~------DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~----i~~~~----- 660 (1123)
T PRK11448 609 -----YSYREAVI------DGYLI--------DHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGE----IDLAT----- 660 (1123)
T ss_pred -----eeHHHHHh------cCCcc--------cCcCCEEEEEEeccccccccccchhhhcchhhhh----hhhcc-----
Confidence 00000000 01111 001333222111 0001 1111112111100 00000
Q ss_pred HHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHH-HHHHHHHHHHH-cCceEEEEecchhhHHHHHHHHHh
Q 000811 569 LINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQ-LLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTF 646 (1272)
Q Consensus 569 l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~-~L~klL~~l~~-~g~KVLIFsq~~~~ldiL~~~L~~ 646 (1272)
.+++.......+...+-...... ++..++..+.. .+.|+||||......+.+.+.|..
T Consensus 661 --------------------l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~ 720 (1123)
T PRK11448 661 --------------------LEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKE 720 (1123)
T ss_pred --------------------CcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 00000000000111111111111 22233333322 236999999999998888877654
Q ss_pred C------CC---cEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHh
Q 000811 647 K------KW---QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMAR 717 (1272)
Q Consensus 647 ~------g~---~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gR 717 (1272)
. ++ .+..++|+++ +++.+|++|.++... .+|+|+...++|+|.+.+++||++.+.-++..++|++||
T Consensus 721 ~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p--~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGR 796 (1123)
T PRK11448 721 AFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLP--NIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGR 796 (1123)
T ss_pred HHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCC--eEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhh
Confidence 2 22 4567999985 578899999764433 579999999999999999999999999999999999999
Q ss_pred hhhcCC---CCceEEEEEe
Q 000811 718 AHRLGQ---TNKVMIFRLI 733 (1272)
Q Consensus 718 ahRiGQ---~k~V~Vyrli 733 (1272)
+.|..- +....||.++
T Consensus 797 gtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 797 ATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred hccCCccCCCceEEEEehH
Confidence 999864 5677888876
No 48
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.85 E-value=1.9e-19 Score=226.81 Aligned_cols=305 Identities=15% Similarity=0.249 Sum_probs=198.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc-cHHHHHHHHHHHCC--C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAP--Q 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~~~~p--~ 358 (1272)
.+|.++|..++..+....... .+.+|..++|+|||+.++..+......+ ..+||++|+. +..|+.+++.++++ +
T Consensus 234 f~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-YQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-CcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 579999999998886654332 4689999999999998865555444432 3899999975 55899999999986 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
+++.+++|+..........+. ......+|+|+|+..+.... .+ -..++|||||+|
T Consensus 313 i~v~lltg~~~~~~r~~~~~~----------------------i~~g~~~IiVgT~~ll~~~~-~~--~~l~lvVIDEaH 367 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLET----------------------IASGQIHLVVGTHALIQEKV-EF--KRLALVIIDEQH 367 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHH----------------------HhCCCCCEEEecHHHHhccc-cc--cccceEEEechh
Confidence 888899987644321111100 01246789999998875321 22 245799999999
Q ss_pred ccCCcchHHHHHHHh-cc---cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh
Q 000811 439 RLKNKDSKLFSSLKQ-YS---TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~-l~---~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1272)
++.-. ....+.. .. ..+.|++||||+...+. +..+ .+.
T Consensus 368 ~fg~~---qr~~l~~~~~~~~~~~~l~~SATp~prtl~----l~~~----------------~~l--------------- 409 (630)
T TIGR00643 368 RFGVE---QRKKLREKGQGGFTPHVLVMSATPIPRTLA----LTVY----------------GDL--------------- 409 (630)
T ss_pred hccHH---HHHHHHHhcccCCCCCEEEEeCCCCcHHHH----HHhc----------------CCc---------------
Confidence 97422 2222322 22 56799999999653211 1000 000
Q ss_pred hhHHHHHhhHhhcCCCcee--EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000811 515 HLLRRVKKDVMKELPPKKE--LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1272)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e--~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~ 592 (1272)
...+...+|+... ....+.-..
T Consensus 410 ------~~~~i~~~p~~r~~i~~~~~~~~~-------------------------------------------------- 433 (630)
T TIGR00643 410 ------DTSIIDELPPGRKPITTVLIKHDE-------------------------------------------------- 433 (630)
T ss_pred ------ceeeeccCCCCCCceEEEEeCcch--------------------------------------------------
Confidence 0001112222110 011110000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh--------hHHHHHHHHHh--CCCcEEEEeCCCCHHH
Q 000811 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTF--KKWQYERIDGKVGGAE 662 (1272)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~--------~ldiL~~~L~~--~g~~~~ridG~~~~~~ 662 (1272)
+ ..+...+.+....|++++||+.... .+..+.+.|.. .++.+..++|.++..+
T Consensus 434 ----------------~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~e 496 (630)
T TIGR00643 434 ----------------K-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDE 496 (630)
T ss_pred ----------------H-HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHH
Confidence 0 1111222222345778888887542 23344444543 4788999999999999
Q ss_pred HHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhhhcCCCCceE
Q 000811 663 RQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 663 Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW-Np~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
|..+++.|.++.. .+|++|.+.++|||++.+++||+++.+. +-..+.|+.||++|-|....+.
T Consensus 497 R~~i~~~F~~g~~---~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 560 (630)
T TIGR00643 497 KEAVMEEFREGEV---DILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCL 560 (630)
T ss_pred HHHHHHHHHcCCC---CEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEE
Confidence 9999999987444 4899999999999999999999999974 7788999999999998765444
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.85 E-value=3.2e-19 Score=229.08 Aligned_cols=308 Identities=17% Similarity=0.213 Sum_probs=203.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc-cHHHHHHHHHHHCCC--
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~~~~p~-- 358 (1272)
.++.|.|..++..+..-+..+ .+.+++.++|+|||..++..+......+ ..+||+||+. +..|....|.++++.
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g-~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG-KQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC-CeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 568999999999886654443 5789999999999998765544433333 4899999975 457888899987754
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
+++.+++|.......-...+ .....+.+|||+|+..+.... .+. +..+|||||+|
T Consensus 529 i~v~~Lsg~~~~~e~~~~~~----------------------~l~~g~~dIVIGTp~ll~~~v-~f~--~L~llVIDEah 583 (926)
T TIGR00580 529 VTIELLSRFRSAKEQNEILK----------------------ELASGKIDILIGTHKLLQKDV-KFK--DLGLLIIDEEQ 583 (926)
T ss_pred cEEEEEeccccHHHHHHHHH----------------------HHHcCCceEEEchHHHhhCCC-Ccc--cCCEEEeeccc
Confidence 45566666543222111100 001235789999997664321 222 45789999999
Q ss_pred ccCCcchHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhH
Q 000811 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~l 517 (1272)
++.- .....++.+. ..+.|+|||||+...+.. .+....++. +
T Consensus 584 rfgv---~~~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s-------------------------------~- 626 (926)
T TIGR00580 584 RFGV---KQKEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLS-------------------------------I- 626 (926)
T ss_pred ccch---hHHHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcE-------------------------------E-
Confidence 9732 3344555554 457899999996432110 000000000 0
Q ss_pred HHHHhhHhhcCCCceeEEE---eecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 518 RRVKKDVMKELPPKKELIL---RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 518 RR~k~dv~~~LP~k~e~~v---~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
. ..||.....+ .+..+.
T Consensus 627 -------I-~~~p~~R~~V~t~v~~~~~---------------------------------------------------- 646 (926)
T TIGR00580 627 -------I-ATPPEDRLPVRTFVMEYDP---------------------------------------------------- 646 (926)
T ss_pred -------E-ecCCCCccceEEEEEecCH----------------------------------------------------
Confidence 0 1111110000 000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~Rq~~I~~Fn~ 672 (1272)
..+...++..+ ..|.+|+||++.+..++.+.+.|... ++++..++|.++..+|..++.+|.+
T Consensus 647 ---------------~~i~~~i~~el-~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~ 710 (926)
T TIGR00580 647 ---------------ELVREAIRREL-LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYK 710 (926)
T ss_pred ---------------HHHHHHHHHHH-HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHc
Confidence 00000111222 35789999999999999999999874 7899999999999999999999987
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~d-WNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
+.. .+||||.+.+.|||++.+++||+++.+ +....+.|+.||++|.|.. -.+|-|+..
T Consensus 711 Gk~---~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~aill~~~ 769 (926)
T TIGR00580 711 GEF---QVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYLLYPH 769 (926)
T ss_pred CCC---CEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEEEECC
Confidence 544 489999999999999999999999986 4667889999999998765 445555544
No 50
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.85 E-value=1.5e-19 Score=229.98 Aligned_cols=330 Identities=17% Similarity=0.190 Sum_probs=213.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHC-CCCeE
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNV 361 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~-p~~~v 361 (1272)
+|+++|.+++..+ ..|.++|++..||+|||+.. +.++..+........|||+|+ .+..|-.+++..+. .++++
T Consensus 36 ~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v 111 (742)
T TIGR03817 36 RPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRP 111 (742)
T ss_pred cCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEE
Confidence 6999999999876 68899999999999999986 445555544433479999996 55577778888875 35788
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--------hccCCCcceeEE
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--------ASLKPIKWQCMI 433 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--------~~L~~~~w~~vI 433 (1272)
.+|.|+...... .. -....+|+|||++++.... ..|. ...+||
T Consensus 112 ~~~~Gdt~~~~r-~~--------------------------i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~--~l~~vV 162 (742)
T TIGR03817 112 ATYDGDTPTEER-RW--------------------------AREHARYVLTNPDMLHRGILPSHARWARFLR--RLRYVV 162 (742)
T ss_pred EEEeCCCCHHHH-HH--------------------------HhcCCCEEEEChHHHHHhhccchhHHHHHHh--cCCEEE
Confidence 889887653321 00 0124689999999985321 1122 346899
Q ss_pred eccccccCCc-chHHHHHHHhcc--------cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHH
Q 000811 434 VDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQ 504 (1272)
Q Consensus 434 vDEaHrlKn~-~S~~~~~l~~l~--------~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~ 504 (1272)
|||||.+.+. .+.+...+..+. ....+++|||- +++.++.. .+...
T Consensus 163 iDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~~---~l~g~-------------------- 217 (742)
T TIGR03817 163 IDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAAS---RLIGA-------------------- 217 (742)
T ss_pred EeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHHH---HHcCC--------------------
Confidence 9999998652 334334443331 23578999995 23333221 11000
Q ss_pred HHHHHHHhhhhhHHHHHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCc
Q 000811 505 ISRLHRMLAPHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHP 583 (1272)
Q Consensus 505 i~~L~~~L~p~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP 583 (1272)
|+.+ +.. .-|......+....... . + ....
T Consensus 218 ---------~~~~------i~~~~~~~~~~~~~~~~p~~~-----~-~----------~~~~------------------ 248 (742)
T TIGR03817 218 ---------PVVA------VTEDGSPRGARTVALWEPPLT-----E-L----------TGEN------------------ 248 (742)
T ss_pred ---------CeEE------ECCCCCCcCceEEEEecCCcc-----c-c----------cccc------------------
Confidence 0000 000 01111111111100000 0 0 0000
Q ss_pred ccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC--------CCcEEEEe
Q 000811 584 YMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--------KWQYERID 655 (1272)
Q Consensus 584 ~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~--------g~~~~rid 655 (1272)
.. .... .....+..+|..+ ...+.++|||++.....+.|..+|... +.++..++
T Consensus 249 ----~~--~~r~--------~~~~~~~~~l~~l----~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~h 310 (742)
T TIGR03817 249 ----GA--PVRR--------SASAEAADLLADL----VAEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYR 310 (742)
T ss_pred ----cc--cccc--------chHHHHHHHHHHH----HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhee
Confidence 00 0000 0011233333333 345889999999999999999888653 56788899
Q ss_pred CCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 656 GKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 656 G~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
|+++.++|..+.+.|.+ +.+.+|++|.++++|||+...|+||+|+.|-+...++|++||++|.|+... ++-+++.
T Consensus 311 gg~~~~eR~~ie~~f~~---G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~--ai~v~~~ 385 (742)
T TIGR03817 311 AGYLPEDRRELERALRD---GELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGAL--VVLVARD 385 (742)
T ss_pred cCCCHHHHHHHHHHHHc---CCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcE--EEEEeCC
Confidence 99999999999999976 445689999999999999999999999999999999999999999997643 3445666
Q ss_pred CCHHHHHHH
Q 000811 736 GSIEERMMQ 744 (1272)
Q Consensus 736 ~TvEE~I~~ 744 (1272)
+..|..++.
T Consensus 386 ~~~d~~~~~ 394 (742)
T TIGR03817 386 DPLDTYLVH 394 (742)
T ss_pred ChHHHHHHh
Confidence 667766554
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.85 E-value=2.9e-19 Score=226.55 Aligned_cols=305 Identities=16% Similarity=0.212 Sum_probs=199.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc-cHHHHHHHHHHHCCC--
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWEREFATWAPQ-- 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~~~~p~-- 358 (1272)
.+|+++|..++.-+..-+..+ .+.+|..++|+|||+.++..+......+ ..+||++|+. +..|+.+.|.++++.
T Consensus 260 f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 260 FELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-YQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 579999999998886655432 4789999999999999866555444332 3799999975 558899999998865
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
+++.+++|+...........- ......+|+|+|+..+.... .+. +.++|||||+|
T Consensus 339 i~v~ll~G~~~~~~r~~~~~~----------------------l~~g~~~IvVgT~~ll~~~v-~~~--~l~lvVIDE~H 393 (681)
T PRK10917 339 IRVALLTGSLKGKERREILEA----------------------IASGEADIVIGTHALIQDDV-EFH--NLGLVIIDEQH 393 (681)
T ss_pred cEEEEEcCCCCHHHHHHHHHH----------------------HhCCCCCEEEchHHHhcccc-hhc--ccceEEEechh
Confidence 788889988654221111100 01246889999998875321 232 45789999999
Q ss_pred ccCCcchHHHHHHHhc-ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhH
Q 000811 439 RLKNKDSKLFSSLKQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~l 517 (1272)
++. ......+... ...+.|+|||||+...+ .+..+ .+ +..
T Consensus 394 rfg---~~qr~~l~~~~~~~~iL~~SATp~prtl----~~~~~----------------g~-------------~~~--- 434 (681)
T PRK10917 394 RFG---VEQRLALREKGENPHVLVMTATPIPRTL----AMTAY----------------GD-------------LDV--- 434 (681)
T ss_pred hhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHH----HHHHc----------------CC-------------Cce---
Confidence 973 2233344433 24688999999953211 00000 00 000
Q ss_pred HHHHhhHhhcCCCce--eEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000811 518 RRVKKDVMKELPPKK--ELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1272)
Q Consensus 518 RR~k~dv~~~LP~k~--e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~ 595 (1272)
.+...+|+.. .....+.
T Consensus 435 -----s~i~~~p~~r~~i~~~~~~-------------------------------------------------------- 453 (681)
T PRK10917 435 -----SVIDELPPGRKPITTVVIP-------------------------------------------------------- 453 (681)
T ss_pred -----EEEecCCCCCCCcEEEEeC--------------------------------------------------------
Confidence 0001122210 0000000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh--------hHHHHHHHHHhC--CCcEEEEeCCCCHHHHHH
Q 000811 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH--------MLDLLEDYLTFK--KWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~--------~ldiL~~~L~~~--g~~~~ridG~~~~~~Rq~ 665 (1272)
..+...+...+....+.|++++|||..+. ....+.+.|... ++++..++|+++..+|+.
T Consensus 454 -----------~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~ 522 (681)
T PRK10917 454 -----------DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDA 522 (681)
T ss_pred -----------cccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHH
Confidence 00001112223333367889999997542 233445555443 578999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhhhcCCCCceE
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW-Np~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
++++|.++.. .+|+||.+.++|||++.+++||+++++. ....+.|+.||++|-|....+.
T Consensus 523 i~~~F~~g~~---~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~i 583 (681)
T PRK10917 523 VMAAFKAGEI---DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCV 583 (681)
T ss_pred HHHHHHcCCC---CEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEE
Confidence 9999986443 4899999999999999999999999974 5788999999999998764443
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.84 E-value=2.6e-19 Score=234.62 Aligned_cols=303 Identities=18% Similarity=0.216 Sum_probs=200.0
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH-HHHHHHHHHHCCC--
Q 000811 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQ-- 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~--~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~~~~p~-- 358 (1272)
.++.+.|..++.-+..-+.. ..+.+++.+||+|||.+++..+...... ...+||+||+..| .|..+.|.+++..
T Consensus 599 ~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~-g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN-HKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc-CCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 47899999999876554433 3678999999999999876443333322 3489999997655 7788888876644
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
+++.+++|...........+- ......+|||+|++.+..+ +.-.+.++|||||+|
T Consensus 678 v~i~~l~g~~s~~e~~~il~~----------------------l~~g~~dIVVgTp~lL~~~---v~~~~L~lLVIDEah 732 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQTQILAE----------------------AAEGKIDILIGTHKLLQSD---VKWKDLGLLIVDEEH 732 (1147)
T ss_pred ceEEEEECCCCHHHHHHHHHH----------------------HHhCCCCEEEECHHHHhCC---CCHhhCCEEEEechh
Confidence 456666665433221111000 0123578999999877532 122356899999999
Q ss_pred ccCCcchHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhH
Q 000811 439 RLKNKDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~l 517 (1272)
++.. .....++.+. ....|++||||++..+.- .+..+.++. ++
T Consensus 733 rfG~---~~~e~lk~l~~~~qvLl~SATpiprtl~l--~~~gl~d~~-------------------------------~I 776 (1147)
T PRK10689 733 RFGV---RHKERIKAMRADVDILTLTATPIPRTLNM--AMSGMRDLS-------------------------------II 776 (1147)
T ss_pred hcch---hHHHHHHhcCCCCcEEEEcCCCCHHHHHH--HHhhCCCcE-------------------------------EE
Confidence 9832 2334455554 457899999996533211 000000000 00
Q ss_pred HHHHhhHhhcCCCceeE---EEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 518 RRVKKDVMKELPPKKEL---ILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 518 RR~k~dv~~~LP~k~e~---~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
..||.... .+......
T Consensus 777 ---------~~~p~~r~~v~~~~~~~~~---------------------------------------------------- 795 (1147)
T PRK10689 777 ---------ATPPARRLAVKTFVREYDS---------------------------------------------------- 795 (1147)
T ss_pred ---------ecCCCCCCCceEEEEecCc----------------------------------------------------
Confidence 01111000 00000000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~Rq~~I~~Fn~ 672 (1272)
......++..+. +|.+|+||++.+..++.+.+.|... ++.+..++|.++..+|..++.+|.+
T Consensus 796 ---------------~~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~ 859 (1147)
T PRK10689 796 ---------------LVVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 (1147)
T ss_pred ---------------HHHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh
Confidence 000112233333 4678999999999999999999876 7899999999999999999999987
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhhhcCCCCceE
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~d-WNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
+.. .+|++|.+.+.|||++.+++||+.+++ |+...+.|+.||++|.|.+..+.
T Consensus 860 Gk~---~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ 913 (1147)
T PRK10689 860 QRF---NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 (1147)
T ss_pred cCC---CEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEE
Confidence 544 489999999999999999999998886 68888999999999998765443
No 53
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.1e-18 Score=214.23 Aligned_cols=328 Identities=20% Similarity=0.329 Sum_probs=225.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhh--CCCCc-EEEEecCcc-HHHHHHHHHHHCC-
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--ERISP-HLVVAPLST-LRNWEREFATWAP- 357 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~--~~~~p-~LIVvP~sl-l~qW~~E~~~~~p- 357 (1272)
..+.|.|..++--+ ..|+..|....+|+|||+.- |.++..+.. ....+ .||++|+-- ..|-.+++..+..
T Consensus 50 ~~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 50 EEPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 35889999998765 57799999999999999874 555555442 22223 999999754 4677777777763
Q ss_pred --CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeEE
Q 000811 358 --QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMI 433 (1272)
Q Consensus 358 --~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~vI 433 (1272)
.+++++++|...-...+... . ...||||.|+..+... ...|.-....++|
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l-------------------------~-~~~~ivVaTPGRllD~i~~~~l~l~~v~~lV 179 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEAL-------------------------K-RGVDIVVATPGRLLDLIKRGKLDLSGVETLV 179 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHH-------------------------h-cCCCEEEECccHHHHHHHcCCcchhhcCEEE
Confidence 57788888876655444332 1 1488999999988643 2234445667899
Q ss_pred eccccccCCcc--hHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000811 434 VDEGHRLKNKD--SKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1272)
Q Consensus 434 vDEaHrlKn~~--S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1272)
+|||.++-+.+ ..+...+..+.. ...++.|||--. . +..|..
T Consensus 180 lDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~-~----------------------------------i~~l~~ 224 (513)
T COG0513 180 LDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPD-D----------------------------------IRELAR 224 (513)
T ss_pred eccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCH-H----------------------------------HHHHHH
Confidence 99999997763 345566666654 567889999511 1 111100
Q ss_pred -Hh-hhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 511 -ML-APHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 511 -~L-~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
.+ .|..+...........+......+.|.-
T Consensus 225 ~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~------------------------------------------------ 256 (513)
T COG0513 225 RYLNDPVEIEVSVEKLERTLKKIKQFYLEVES------------------------------------------------ 256 (513)
T ss_pred HHccCCcEEEEccccccccccCceEEEEEeCC------------------------------------------------
Confidence 00 0000000000000000111111111110
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
...|+.+|..++..... .++|||+.....++.|...|...|+++..|+|++++.+|..+++
T Consensus 257 -----------------~~~k~~~L~~ll~~~~~--~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~ 317 (513)
T COG0513 257 -----------------EEEKLELLLKLLKDEDE--GRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALE 317 (513)
T ss_pred -----------------HHHHHHHHHHHHhcCCC--CeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHH
Confidence 01477777777765432 37999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHH
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~ 748 (1272)
.|+++.. -+|++|.++++||+++..++||+||.+.++..|++++||.+|.|.+- ..+.|++. .-|...+..+.+
T Consensus 318 ~F~~g~~---~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G--~ai~fv~~-~~e~~~l~~ie~ 391 (513)
T COG0513 318 KFKDGEL---RVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKG--VAISFVTE-EEEVKKLKRIEK 391 (513)
T ss_pred HHHcCCC---CEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCC--eEEEEeCc-HHHHHHHHHHHH
Confidence 9985444 48999999999999999999999999999999999999999999554 44567766 335566665555
Q ss_pred H
Q 000811 749 K 749 (1272)
Q Consensus 749 K 749 (1272)
.
T Consensus 392 ~ 392 (513)
T COG0513 392 R 392 (513)
T ss_pred H
Confidence 4
No 54
>PRK02362 ski2-like helicase; Provisional
Probab=99.79 E-value=1.6e-17 Score=213.58 Aligned_cols=317 Identities=20% Similarity=0.174 Sum_probs=199.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH-HHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCC-CCe
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p-~~~ 360 (1272)
.+|+|+|.+++.-+ +..+.+++++.+||+|||+.+... +..+. ..+++|+|+|. +++.|+.++|.++.+ +.+
T Consensus 22 ~~l~p~Q~~ai~~~---~~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAG---LLDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHH---HhCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 36999999998642 357899999999999999998544 44443 23589999995 777899999988753 678
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh----ccCCCcceeEEecc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKPIKWQCMIVDE 436 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~----~L~~~~w~~vIvDE 436 (1272)
+..++|+...+.. .....+|+|+|++.+..-.. .+. ..++|||||
T Consensus 97 v~~~tGd~~~~~~-----------------------------~l~~~~IiV~Tpek~~~llr~~~~~l~--~v~lvViDE 145 (737)
T PRK02362 97 VGISTGDYDSRDE-----------------------------WLGDNDIIVATSEKVDSLLRNGAPWLD--DITCVVVDE 145 (737)
T ss_pred EEEEeCCcCcccc-----------------------------ccCCCCEEEECHHHHHHHHhcChhhhh--hcCEEEEEC
Confidence 8888887432210 01356899999998743221 122 357999999
Q ss_pred ccccCCcc--hHHHHHHHhc----ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000811 437 GHRLKNKD--SKLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1272)
Q Consensus 437 aHrlKn~~--S~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1272)
+|.+.+.. ..+-..+..+ .....++||||. .|..++... +....+.+
T Consensus 146 ~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl--~n~~~la~w---l~~~~~~~---------------------- 198 (737)
T PRK02362 146 VHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATI--GNADELADW---LDAELVDS---------------------- 198 (737)
T ss_pred ccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccC--CCHHHHHHH---hCCCcccC----------------------
Confidence 99996532 2222222333 234679999996 344554332 22211100
Q ss_pred HhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000811 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1272)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e 590 (1272)
..+|. | ....+.... . ++ . ... +..+
T Consensus 199 ~~rpv-------------~-l~~~v~~~~--~----~~----------~---~~~----------------~~~~----- 224 (737)
T PRK02362 199 EWRPI-------------D-LREGVFYGG--A----IH----------F---DDS----------------QREV----- 224 (737)
T ss_pred CCCCC-------------C-CeeeEecCC--e----ec----------c---ccc----------------cccC-----
Confidence 00010 0 000000000 0 00 0 000 0000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC-----------------------
Q 000811 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK----------------------- 647 (1272)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~----------------------- 647 (1272)
....+... ..++......+.++|||++.......+...|...
T Consensus 225 --------------~~~~~~~~-~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (737)
T PRK02362 225 --------------EVPSKDDT-LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREV 289 (737)
T ss_pred --------------CCccchHH-HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 00001011 1122222346789999999988776666555322
Q ss_pred -------------CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE----ec-----CC
Q 000811 648 -------------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YD-----SD 705 (1272)
Q Consensus 648 -------------g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi----~D-----~d 705 (1272)
...+..++|+++..+|..+.+.|.+ +.+.+|++|.+++.|||+++..+||. || .+
T Consensus 290 ~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~---G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~ 366 (737)
T PRK02362 290 SDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRD---RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQP 366 (737)
T ss_pred cCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHc---CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCcee
Confidence 1357788999999999999999976 44568999999999999999887776 77 47
Q ss_pred CChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 706 WNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 706 WNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
.++..+.|++|||+|.|....-.++-++..
T Consensus 367 ~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~ 396 (737)
T PRK02362 367 IPVLEYHQMAGRAGRPGLDPYGEAVLLAKS 396 (737)
T ss_pred CCHHHHHHHhhcCCCCCCCCCceEEEEecC
Confidence 788999999999999998765555555543
No 55
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.79 E-value=2.2e-17 Score=195.46 Aligned_cols=328 Identities=14% Similarity=0.189 Sum_probs=196.3
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEecC-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKN 384 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~ 384 (1272)
+++..+||+|||.+++.++...... ..+++++|+|. +++.|+.+.+..++.. ++..++|...... .... .+.
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~-~~~~----~~~ 75 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKR-IKEM----GDS 75 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHH-Hhcc----CCc
Confidence 5789999999999988877765543 34589999995 7779999999988644 5666676543211 0000 000
Q ss_pred chhhhccccCccccccccccccccEEEecHHHHHhhhhc-cC-------CCcceeEEeccccccCCcch-HHHHHHHhcc
Q 000811 385 PKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-LK-------PIKWQCMIVDEGHRLKNKDS-KLFSSLKQYS 455 (1272)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~-L~-------~~~w~~vIvDEaHrlKn~~S-~~~~~l~~l~ 455 (1272)
. ...... .............+++++|++.+...... +. .+...+||+||+|.+..... .+...+..+.
T Consensus 76 ~-~~~~~~--~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~ 152 (358)
T TIGR01587 76 E-EFEHLF--PLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK 152 (358)
T ss_pred h-hHHHHH--HHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 0 000000 00000001123567999999987654222 21 22336899999999875422 2333333333
Q ss_pred --cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCcee
Q 000811 456 --TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKE 533 (1272)
Q Consensus 456 --~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e 533 (1272)
....+++|||+- ..+-.+ +..+.. ......+
T Consensus 153 ~~~~~~i~~SATlp----~~l~~~----------------------------------~~~~~~-----~~~~~~~---- 185 (358)
T TIGR01587 153 DNDVPILLMSATLP----KFLKEY----------------------------------AEKIGY-----VEFNEPL---- 185 (358)
T ss_pred HcCCCEEEEecCch----HHHHHH----------------------------------HhcCCC-----cccccCC----
Confidence 245799999961 000000 000000 0000000
Q ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHH
Q 000811 534 LILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLL 613 (1272)
Q Consensus 534 ~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L 613 (1272)
...+. +....|++..... ....|...+
T Consensus 186 -----~~~~~---------------------------------~~~~~~~~~~~~~---------------~~~~~~~~l 212 (358)
T TIGR01587 186 -----DLKEE---------------------------------RRFERHRFIKIES---------------DKVGEISSL 212 (358)
T ss_pred -----CCccc---------------------------------cccccccceeecc---------------ccccCHHHH
Confidence 00000 0000111111000 011234445
Q ss_pred HHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHH----HHHHhccCCCceEEEeecccc
Q 000811 614 DKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIR----IDRFNAKNSSRFCFLLSTRAG 687 (1272)
Q Consensus 614 ~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~~Rq~~----I~~Fn~~~s~~~vfLlSTrag 687 (1272)
.+++..+ ..+.++|||++.....+.+...|...+. .+..++|.++..+|..+ ++.|.+ +...+|++|.++
T Consensus 213 ~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~---~~~~ilvaT~~~ 288 (358)
T TIGR01587 213 ERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK---NEKFVIVATQVI 288 (358)
T ss_pred HHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC---CCCeEEEECcch
Confidence 5555433 3578999999999999999999987766 48999999999999764 788865 334589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC----ceEEEEEeeCC---CHHHHHHHHHHHHH
Q 000811 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN----KVMIFRLITRG---SIEERMMQMTKKKM 750 (1272)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k----~V~Vyrlit~~---TvEE~I~~~~~~K~ 750 (1272)
+.|||+. +++||.++.+ +..++|++||++|.|.+. .|.||.....+ .++..++++...++
T Consensus 289 ~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~t~~~~ 355 (358)
T TIGR01587 289 EASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGKLFPYPYELVERTIQKL 355 (358)
T ss_pred hceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCCCeecCCHHHHHHHHHHH
Confidence 9999994 8999988765 889999999999999764 45555554444 56666666665553
No 56
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=206.09 Aligned_cols=327 Identities=21% Similarity=0.206 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCC-C----C-cEEEEecCccHH-HHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGER-I----S-PHLVVAPLSTLR-NWEREFATW 355 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~-~----~-p~LIVvP~sll~-qW~~E~~~~ 355 (1272)
.+++|.|..++.-+ ..|.|+++..+||+|||..| +.++..|...+ . + .+|.|.|+..|. .-.+.+..|
T Consensus 21 ~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 21 TSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred CCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 56899999998777 79999999999999999998 55556666652 1 2 579999976664 455566666
Q ss_pred C--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hhccCCC
Q 000811 356 A--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPI 427 (1272)
Q Consensus 356 ~--p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d------~~~L~~~ 427 (1272)
. -++.+-+-||+......- +.....+||+|||+|++... ...|..+
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~--------------------------r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~v 150 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQ--------------------------KMLKNPPHILITTPESLAILLNSPKFRELLRDV 150 (814)
T ss_pred HHHcCCccceecCCCChHHhh--------------------------hccCCCCcEEEeChhHHHHHhcCHHHHHHhcCC
Confidence 5 256666677765432211 11235789999999998543 3345555
Q ss_pred cceeEEeccccccCCc--chHHHHHHHhcc----cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000811 428 KWQCMIVDEGHRLKNK--DSKLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~--~S~~~~~l~~l~----~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~ 501 (1272)
+ +|||||.|.+.+. .++++-.|..+. .-.|++||||= .++.+ ...||.+..-
T Consensus 151 r--~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV--~~~~~---varfL~g~~~--------------- 208 (814)
T COG1201 151 R--YVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATV--GPPEE---VAKFLVGFGD--------------- 208 (814)
T ss_pred c--EEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhcc--CCHHH---HHHHhcCCCC---------------
Confidence 5 5999999999864 456666666553 24689999994 23333 3334333210
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000811 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1272)
Q Consensus 502 ~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1272)
+. .-|......+.++.|.++--..
T Consensus 209 ------------~~------~Iv~~~~~k~~~i~v~~p~~~~-------------------------------------- 232 (814)
T COG1201 209 ------------PC------EIVDVSAAKKLEIKVISPVEDL-------------------------------------- 232 (814)
T ss_pred ------------ce------EEEEcccCCcceEEEEecCCcc--------------------------------------
Confidence 00 0000001111111111110000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCC-CcEEEEeCCCCH
Q 000811 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK-WQYERIDGKVGG 660 (1272)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g-~~~~ridG~~~~ 660 (1272)
... ..-...+.+.+..+.++...+|||++...+.+.|...|...+ ..+..-+||.+.
T Consensus 233 ------------~~~----------~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSr 290 (814)
T COG1201 233 ------------IYD----------EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSR 290 (814)
T ss_pred ------------ccc----------cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccH
Confidence 000 001122334455555667799999999999999999998876 899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhh-hhcCCCCceEEEEEeeCCCHH
Q 000811 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRLITRGSIE 739 (1272)
Q Consensus 661 ~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRa-hRiGQ~k~V~Vyrlit~~TvE 739 (1272)
+.|..+-++|.++. ...++||.++.+|||.-..|.||.|.||-.-...+|++||+ ||+|....- ++++.+ .+
T Consensus 291 e~R~~vE~~lk~G~---lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg---~ii~~~-r~ 363 (814)
T COG1201 291 ELRLEVEERLKEGE---LKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKG---IIIAED-RD 363 (814)
T ss_pred HHHHHHHHHHhcCC---ceEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccE---EEEecC-HH
Confidence 99999999998755 45799999999999999999999999999999999999999 777765444 344555 44
Q ss_pred HHHHHHHH
Q 000811 740 ERMMQMTK 747 (1272)
Q Consensus 740 E~I~~~~~ 747 (1272)
+.+--.+.
T Consensus 364 dllE~~vi 371 (814)
T COG1201 364 DLLECLVL 371 (814)
T ss_pred HHHHHHHH
Confidence 44433333
No 57
>PRK00254 ski2-like helicase; Provisional
Probab=99.78 E-value=5.8e-17 Score=207.91 Aligned_cols=317 Identities=19% Similarity=0.198 Sum_probs=195.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCC-CCe
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMN 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p-~~~ 360 (1272)
.+|+|+|.+++.-. +..+.++|++.+||+|||+.+ ++++..+.. ..+.+|+|+|. +++.++.++|..|.. +.+
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~ 97 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLR 97 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCE
Confidence 36999999998631 267899999999999999998 455555443 33589999996 666888888887753 577
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh----hccCCCcceeEEecc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----ASLKPIKWQCMIVDE 436 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~----~~L~~~~w~~vIvDE 436 (1272)
+..++|+...... .....+|+|+|++.+.... ..+. ..++|||||
T Consensus 98 v~~~~Gd~~~~~~-----------------------------~~~~~~IiV~Tpe~~~~ll~~~~~~l~--~l~lvViDE 146 (720)
T PRK00254 98 VAMTTGDYDSTDE-----------------------------WLGKYDIIIATAEKFDSLLRHGSSWIK--DVKLVVADE 146 (720)
T ss_pred EEEEeCCCCCchh-----------------------------hhccCCEEEEcHHHHHHHHhCCchhhh--cCCEEEEcC
Confidence 7888887432210 0135789999999874422 1222 457999999
Q ss_pred ccccCC--cchHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 437 GHRLKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 437 aHrlKn--~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
+|.+.. ....+...+..+. ....++||||. .|..++.. ++....+.. ..+
T Consensus 147 ~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl--~n~~~la~---wl~~~~~~~----------------------~~r 199 (720)
T PRK00254 147 IHLIGSYDRGATLEMILTHMLGRAQILGLSATV--GNAEELAE---WLNAELVVS----------------------DWR 199 (720)
T ss_pred cCccCCccchHHHHHHHHhcCcCCcEEEEEccC--CCHHHHHH---HhCCccccC----------------------CCC
Confidence 999864 3344445555544 34678999997 23454433 222111100 000
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
| .|... .++ ..- ...+. .+..
T Consensus 200 p-------------v~l~~-~~~-~~~----~~~~~-------------~~~~--------------------------- 220 (720)
T PRK00254 200 P-------------VKLRK-GVF-YQG----FLFWE-------------DGKI--------------------------- 220 (720)
T ss_pred C-------------Cccee-eEe-cCC----eeecc-------------Ccch---------------------------
Confidence 0 11000 000 000 00000 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh---------------------------
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--------------------------- 646 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~--------------------------- 646 (1272)
... ...+..++..+...|.++|||+........+...|..
T Consensus 221 -------~~~------~~~~~~~~~~~i~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (720)
T PRK00254 221 -------ERF------PNSWESLVYDAVKKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTN 287 (720)
T ss_pred -------hcc------hHHHHHHHHHHHHhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCc
Confidence 000 0001122223334578899999887765444333311
Q ss_pred ------CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-------ecCC-CChhhHH
Q 000811 647 ------KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-------YDSD-WNPHADL 712 (1272)
Q Consensus 647 ------~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi-------~D~d-WNp~~~~ 712 (1272)
....+..++|+++.++|..+.+.|.++ .+.+|++|.+++.|+|+++.++||. ++.+ .....+.
T Consensus 288 ~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G---~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~ 364 (720)
T PRK00254 288 EKLKKALRGGVAFHHAGLGRTERVLIEDAFREG---LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQ 364 (720)
T ss_pred HHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC---CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHH
Confidence 123578899999999999999999864 4458999999999999998887774 2222 2345789
Q ss_pred HHHHhhhhcCCCCceEEEEEeeCCC
Q 000811 713 QAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 713 Qa~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
|++|||+|.|..+.-.++-+++...
T Consensus 365 Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 365 QMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred HhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999998776666666665543
No 58
>PRK01172 ski2-like helicase; Provisional
Probab=99.78 E-value=4.3e-17 Score=208.13 Aligned_cols=304 Identities=19% Similarity=0.217 Sum_probs=191.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCC-CCeE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP-QMNV 361 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p-~~~v 361 (1272)
.+|+|+|.++++.+ ..+.++|++.+||+|||+++...+......+ +.+|+|+|. ++..++.+++.++.. +..+
T Consensus 21 ~~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~-~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG-LKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC-CcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 46999999999865 6788999999999999999865554443332 488999995 667888888887652 4666
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hhccCCCcceeEEeccc
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----~~~L~~~~w~~vIvDEa 437 (1272)
...+|....... .....+|+|+|++.+... ...+. .+++|||||+
T Consensus 96 ~~~~G~~~~~~~-----------------------------~~~~~dIiv~Tpek~~~l~~~~~~~l~--~v~lvViDEa 144 (674)
T PRK01172 96 KISIGDYDDPPD-----------------------------FIKRYDVVILTSEKADSLIHHDPYIIN--DVGLIVADEI 144 (674)
T ss_pred EEEeCCCCCChh-----------------------------hhccCCEEEECHHHHHHHHhCChhHHh--hcCEEEEecc
Confidence 677776432110 012468999999876432 11222 4579999999
Q ss_pred cccCCcc--hHHHHHHHh---cc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHH
Q 000811 438 HRLKNKD--SKLFSSLKQ---YS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1272)
Q Consensus 438 HrlKn~~--S~~~~~l~~---l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1272)
|.+.... ..+...+.. +. ....++||||+ .|..++. .++....+.. .
T Consensus 145 H~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl--~n~~~la---~wl~~~~~~~----------------------~ 197 (674)
T PRK01172 145 HIIGDEDRGPTLETVLSSARYVNPDARILALSATV--SNANELA---QWLNASLIKS----------------------N 197 (674)
T ss_pred hhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCcc--CCHHHHH---HHhCCCccCC----------------------C
Confidence 9986432 222222222 22 34578999997 2334332 2222211100 0
Q ss_pred hhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000811 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1272)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~ 591 (1272)
. ...| ....++... ..+ .+....
T Consensus 198 ~-------------r~vp-l~~~i~~~~------~~~-------------------------------------~~~~~~ 220 (674)
T PRK01172 198 F-------------RPVP-LKLGILYRK------RLI-------------------------------------LDGYER 220 (674)
T ss_pred C-------------CCCC-eEEEEEecC------eee-------------------------------------eccccc
Confidence 0 0011 111111100 000 000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC------------------------
Q 000811 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK------------------------ 647 (1272)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~------------------------ 647 (1272)
.+. .+..++......|.++|||+......+.+...|...
T Consensus 221 ----------------~~~-~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~ 283 (674)
T PRK01172 221 ----------------SQV-DINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEM 283 (674)
T ss_pred ----------------ccc-cHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHH
Confidence 000 022334444456889999999888777776666432
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecC---------CCChhhHHHHHHh
Q 000811 648 -KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDS---------DWNPHADLQAMAR 717 (1272)
Q Consensus 648 -g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~---------dWNp~~~~Qa~gR 717 (1272)
...+..++|+++..+|..+.+.|.++ .+.+|++|.+++.|||+++ .+||++|. ++++..+.|++||
T Consensus 284 l~~gv~~~hagl~~~eR~~ve~~f~~g---~i~VLvaT~~la~Gvnipa-~~VII~~~~~~~~~~~~~~s~~~~~Qm~GR 359 (674)
T PRK01172 284 LPHGVAFHHAGLSNEQRRFIEEMFRNR---YIKVIVATPTLAAGVNLPA-RLVIVRDITRYGNGGIRYLSNMEIKQMIGR 359 (674)
T ss_pred HhcCEEEecCCCCHHHHHHHHHHHHcC---CCeEEEecchhhccCCCcc-eEEEEcCceEeCCCCceeCCHHHHHHHhhc
Confidence 12366789999999999999999763 3458999999999999996 57777664 3577889999999
Q ss_pred hhhcCCCCceE
Q 000811 718 AHRLGQTNKVM 728 (1272)
Q Consensus 718 ahRiGQ~k~V~ 728 (1272)
|+|.|......
T Consensus 360 AGR~g~d~~g~ 370 (674)
T PRK01172 360 AGRPGYDQYGI 370 (674)
T ss_pred CCCCCCCCcce
Confidence 99999765533
No 59
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.76 E-value=6.5e-17 Score=200.50 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=100.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+.+..+...|.+|||||..+...+.|...|...|+++..++|.....+|..+...|+ .+ .++++|.
T Consensus 406 ~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~---~g--~VlIATd 480 (762)
T TIGR03714 406 LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQ---KG--AVTVATS 480 (762)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCC---CC--eEEEEcc
Confidence 467999999999988889999999999999999999999999999999999998777765554443 33 4799999
Q ss_pred ccccccCcc---------CCCEEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 686 AGGLGINLA---------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 686 agg~GINL~---------~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
.+|+|+|+. ..++||.|+++-+. .+.|+.||++|.|....+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~r-id~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSR-VDLQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcH-HHHHhhhcccCCCCceeEE
Confidence 999999999 78999999999665 4599999999999876543
No 60
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=1e-16 Score=202.58 Aligned_cols=361 Identities=16% Similarity=0.121 Sum_probs=200.9
Q ss_pred CCCcHHHHHHHHHHHHhhcC------CCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecC-ccHHHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATW 355 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~------~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~-sll~qW~~E~~~~ 355 (1272)
.-.|+||..+|+-+...+.. .++|++.+.+|+|||++++.++..++... ...+|||||. .+..||.++|..+
T Consensus 237 ~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 237 PYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred eehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 34789999999988777654 46899999999999999999988877543 3489999995 6779999999998
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh-hhccCCC----cce
Q 000811 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPI----KWQ 430 (1272)
Q Consensus 356 ~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d-~~~L~~~----~w~ 430 (1272)
.+.... -.++ ...+... .......|+|||.+.+... ...+..+ ...
T Consensus 317 ~~~~~~--~~~s---~~~L~~~------------------------l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~ 367 (667)
T TIGR00348 317 QKDCAE--RIES---IAELKRL------------------------LEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEV 367 (667)
T ss_pred CCCCCc--ccCC---HHHHHHH------------------------HhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCE
Confidence 753110 0111 1111110 0112356999999999752 1122221 223
Q ss_pred eEEeccccccCCcchHHHHHHH-hcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 431 CMIVDEGHRLKNKDSKLFSSLK-QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 431 ~vIvDEaHrlKn~~S~~~~~l~-~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
+||+|||||.. .......++ .+....+++|||||+...-.+-+ ..|...|+.
T Consensus 368 lvIvDEaHrs~--~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~----------- 420 (667)
T TIGR00348 368 VVIFDEAHRSQ--YGELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR----------- 420 (667)
T ss_pred EEEEEcCcccc--chHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC-----------
Confidence 89999999864 233445553 56678999999999753211100 111000100
Q ss_pred HHhhhhhHHHHHhhHhh-cCCCceeEEEeec--CCHHHHHHHHHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhCCcc
Q 000811 510 RMLAPHLLRRVKKDVMK-ELPPKKELILRVE--LSSKQKEYYKAILTRNYQILTRRGGA--QISLINVVMELRKLCCHPY 584 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~-~LP~k~e~~v~v~--ls~~Q~~~Y~~il~~~~~~l~~~~~~--~~~l~~~l~~Lrk~c~hP~ 584 (1272)
.+..|-+.. .+.. .+.|.....+.+. ++... .+..+............. ...+......+...
T Consensus 421 -~i~~Y~~~~---AI~dG~~~~i~Y~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----- 488 (667)
T TIGR00348 421 -YLHRYFITD---AIRDGLTVKIDYEDRLPEDHLDRKK---LDAFFDEIFELLPERIREITKESLKEKLQKTKKI----- 488 (667)
T ss_pred -eEEEeeHHH---HhhcCCeeeEEEEecchhhccChHH---HHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhh-----
Confidence 001111111 1111 1122222222221 11111 111111111100000000 00111111111111
Q ss_pred cccCCCCCcccchHHHHHHHhhhhHHHHHHHHH----HH-HHHcCceEEEEecchhhHHHHHHHHHhC-----CCcEEEE
Q 000811 585 MLEGVEPDIEDTNESFKQLLESSGKLQLLDKMM----VK-LKEQGHRVLIYSQFQHMLDLLEDYLTFK-----KWQYERI 654 (1272)
Q Consensus 585 L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL----~~-l~~~g~KVLIFsq~~~~ldiL~~~L~~~-----g~~~~ri 654 (1272)
+.+...+..+.+.+ .. ....+.|.+|||.....+..+.+.|... +.....+
T Consensus 489 -------------------~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~ 549 (667)
T TIGR00348 489 -------------------LFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVM 549 (667)
T ss_pred -------------------hcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEe
Confidence 11111112221111 11 1223579999999998887777776432 3455667
Q ss_pred eCCCCHH---------------------HHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHH
Q 000811 655 DGKVGGA---------------------ERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQ 713 (1272)
Q Consensus 655 dG~~~~~---------------------~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Q 713 (1272)
+|+.... ....++++|.++ +..-+|+++....+|+|.+.++++++.-|--+ +..+|
T Consensus 550 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~--~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQ 626 (667)
T TIGR00348 550 TGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKE--ENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQ 626 (667)
T ss_pred cCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCC--CCceEEEEEcccccccCCCccceEEEeccccc-cHHHH
Confidence 7765432 234789999764 33457888899999999999999988887654 56899
Q ss_pred HHHhhhhc-C-CCCceEEEEEee
Q 000811 714 AMARAHRL-G-QTNKVMIFRLIT 734 (1272)
Q Consensus 714 a~gRahRi-G-Q~k~V~Vyrlit 734 (1272)
++||+.|+ + .+....|+.++.
T Consensus 627 ai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 627 AIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHhccccCCCCCCEEEEECcC
Confidence 99999995 4 344567777764
No 61
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=2.7e-17 Score=187.52 Aligned_cols=356 Identities=18% Similarity=0.229 Sum_probs=214.2
Q ss_pred CCcHHHHHHHHHHHHhhc-----CCCceEEEeCCCChHHHH-HHHHHHHHhhCCCC--cEEEEecCcc-HHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWS-----KQTHVILADEMGLGKTIQ-SIAFLASLFGERIS--PHLVVAPLST-LRNWEREFATW 355 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~-----~~~~~ILaDemGlGKTiq-aia~l~~l~~~~~~--p~LIVvP~sl-l~qW~~E~~~~ 355 (1272)
.++|-|...+-|+..-.. ..+...++..+|+|||+. +|-++..|...... +.|||+|... ..|-.++|.+|
T Consensus 159 ~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 159 RLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 688999999999865544 355678999999999998 45555555554333 8899999755 57889999999
Q ss_pred CCC--CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCC---cce
Q 000811 356 APQ--MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQ 430 (1272)
Q Consensus 356 ~p~--~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~---~w~ 430 (1272)
++. +-|....|...-+...++..- .....+.||+|+|+..+......-+.| .-.
T Consensus 239 ~~~tgL~V~~~sgq~sl~~E~~qL~~---------------------~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~Lr 297 (620)
T KOG0350|consen 239 NSGTGLAVCSLSGQNSLEDEARQLAS---------------------DPPECRIDILVATPGRLVDHLNNTKSFDLKHLR 297 (620)
T ss_pred ccCCceEEEecccccchHHHHHHHhc---------------------CCCccccceEEcCchHHHHhccCCCCcchhhce
Confidence 965 455555666555544444210 111236799999999997765543333 456
Q ss_pred eEEeccccccCCcch--HHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 431 CMIVDEGHRLKNKDS--KLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 431 ~vIvDEaHrlKn~~S--~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
++|||||.|+.+..- .+...+..+....++.+. ..++.+..-..|..++. +
T Consensus 298 fLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~--------~nii~~~~~~~pt~~~e-------------------~ 350 (620)
T KOG0350|consen 298 FLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACL--------DNIIRQRQAPQPTVLSE-------------------L 350 (620)
T ss_pred EEEechHHHHHHHHHHHHHHHHHHHhCCchhhcCh--------hhhhhhcccCCchhhHH-------------------H
Confidence 899999999865432 222333332222222211 11111111111111100 0
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
...+ . ..-.+.++-.+.+.+.+....+ ..| -.+||-++-.
T Consensus 351 ~t~~------------~------------~~~~~l~kL~~satLsqdP~Kl--------------~~l--~l~~Prl~~v 390 (620)
T KOG0350|consen 351 LTKL------------G------------KLYPPLWKLVFSATLSQDPSKL--------------KDL--TLHIPRLFHV 390 (620)
T ss_pred Hhhc------------C------------CcCchhHhhhcchhhhcChHHH--------------hhh--hcCCCceEEe
Confidence 0000 0 0000111111111111111111 111 1244433322
Q ss_pred CCCCc--ccchHHH-HHHHhhhh--HHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH----hCCCcEEEEeCCCC
Q 000811 589 VEPDI--EDTNESF-KQLLESSG--KLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVG 659 (1272)
Q Consensus 589 ~e~~~--~~~~~~~-~~li~~S~--Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~ 659 (1272)
..+.. ......+ ...+-.+. |-..+..+|.. ..+.++|+|+........|...|. .-+.++-.++|+.+
T Consensus 391 ~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~--~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~ 468 (620)
T KOG0350|consen 391 SKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS--NKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLN 468 (620)
T ss_pred ecccceeeecChhhhhceeecccccchHhHHHHHHH--hhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhh
Confidence 21110 0000001 11122222 44455556654 457899999999988887777775 34566677999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 660 ~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
...|.+.+.+|+.++-. +||++.++++||++...+.||.||++-.-..|++|.||..|.||... .|.++..
T Consensus 469 ~k~r~k~l~~f~~g~i~---vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~--a~tll~~ 539 (620)
T KOG0350|consen 469 GKRRYKMLEKFAKGDIN---VLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGY--AITLLDK 539 (620)
T ss_pred HHHHHHHHHHHhcCCce---EEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCce--EEEeecc
Confidence 99999999999875544 89999999999999999999999999999999999999999999854 3455544
No 62
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=3.6e-17 Score=174.45 Aligned_cols=313 Identities=19% Similarity=0.260 Sum_probs=217.7
Q ss_pred cHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHH-HHHHHHHHhhCCC-CcEEEEecCccH-HHHHHHHHHHCCCC--eE
Q 000811 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI-SPHLVVAPLSTL-RNWEREFATWAPQM--NV 361 (1272)
Q Consensus 287 r~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiq-aia~l~~l~~~~~-~p~LIVvP~sll-~qW~~E~~~~~p~~--~v 361 (1272)
...|..++--+ .+|+++|.....|+|||.+ +|+++..+.-... ...||+.|+--| .|-..-+......+ .+
T Consensus 51 S~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~ 126 (400)
T KOG0328|consen 51 SAIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQC 126 (400)
T ss_pred hHHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceE
Confidence 34566776555 6899999999999999987 5777665533322 378999997555 55555565555444 44
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhhccCCCcceeEEeccccc
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGHR 439 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~--d~~~L~~~~w~~vIvDEaHr 439 (1272)
....|.+.-.+.|+..+ ...+||.-|+..+.. ....|......++|+|||..
T Consensus 127 hacigg~n~gedikkld--------------------------~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDe 180 (400)
T KOG0328|consen 127 HACIGGKNLGEDIKKLD--------------------------YGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADE 180 (400)
T ss_pred EEEecCCccchhhhhhc--------------------------ccceEeeCCCchHHHHHHhccccccceeEEEeccHHH
Confidence 55566665444444321 356788888877654 34566667788999999999
Q ss_pred cCC--cchHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 000811 440 LKN--KDSKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1272)
Q Consensus 440 lKn--~~S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1272)
+-| ...+++...+.+. ....+++|||- ++|+..+.++..++..
T Consensus 181 mL~kgfk~Qiydiyr~lp~~~Qvv~~SATl----p~eilemt~kfmtdpv------------------------------ 226 (400)
T KOG0328|consen 181 MLNKGFKEQIYDIYRYLPPGAQVVLVSATL----PHEILEMTEKFMTDPV------------------------------ 226 (400)
T ss_pred HHHhhHHHHHHHHHHhCCCCceEEEEeccC----cHHHHHHHHHhcCCce------------------------------
Confidence 855 4567888888887 55788999995 3444433333333221
Q ss_pred HHHHHhhHhhcCCCceeEEEeecCCHHH-HHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000811 517 LRRVKKDVMKELPPKKELILRVELSSKQ-KEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1272)
Q Consensus 517 lRR~k~dv~~~LP~k~e~~v~v~ls~~Q-~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~ 595 (1272)
...+-+-+++-+- +++|-++-.
T Consensus 227 ---------------rilvkrdeltlEgIKqf~v~ve~------------------------------------------ 249 (400)
T KOG0328|consen 227 ---------------RILVKRDELTLEGIKQFFVAVEK------------------------------------------ 249 (400)
T ss_pred ---------------eEEEecCCCchhhhhhheeeech------------------------------------------
Confidence 1111111222221 111111000
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCC
Q 000811 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNS 675 (1272)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s 675 (1272)
..=|+..|..+-..|- -...+|||+..+..|.|.+.++..++.+..++|.++.++|.+++.+|..+.|
T Consensus 250 ----------EewKfdtLcdLYd~Lt--ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~S 317 (400)
T KOG0328|consen 250 ----------EEWKFDTLCDLYDTLT--ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKS 317 (400)
T ss_pred ----------hhhhHhHHHHHhhhhe--hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCc
Confidence 0013333444433331 2368999999999999999999999999999999999999999999988777
Q ss_pred CceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCC
Q 000811 676 SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 676 ~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
. +|++|.+-+.||+++.++.||.||.|-|+..|++++||.+|.|.+.- ...||....
T Consensus 318 r---vLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGv--ainFVk~~d 374 (400)
T KOG0328|consen 318 R---VLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV--AINFVKSDD 374 (400)
T ss_pred e---EEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcce--EEEEecHHH
Confidence 5 89999999999999999999999999999999999999999997753 346776553
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.75 E-value=6.1e-17 Score=202.64 Aligned_cols=107 Identities=23% Similarity=0.411 Sum_probs=88.9
Q ss_pred HHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHH-----HHHHHHhc----cC----CCceEEEeecccc
Q 000811 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ-----IRIDRFNA----KN----SSRFCFLLSTRAG 687 (1272)
Q Consensus 621 ~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq-----~~I~~Fn~----~~----s~~~vfLlSTrag 687 (1272)
...+.++|||++.+..++.|...|...++ ..++|.+++.+|. .++++|.. .. .....+||+|.++
T Consensus 269 ~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVa 346 (844)
T TIGR02621 269 KDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAG 346 (844)
T ss_pred hhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchh
Confidence 45678999999999999999999998887 8999999999999 78999975 11 1124589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCc--eEEEEE
Q 000811 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNK--VMIFRL 732 (1272)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~--V~Vyrl 732 (1272)
+.|||+.. ++||++..+ +..++||+||++|.|.... +.|+.+
T Consensus 347 erGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 347 EVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred hhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 99999975 999997776 5799999999999998644 444433
No 64
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=4.4e-16 Score=176.76 Aligned_cols=316 Identities=19% Similarity=0.309 Sum_probs=215.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh-h-CC---CC--cEEEEecCccHH-H---HHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-G-ER---IS--PHLVVAPLSTLR-N---WEREF 352 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~-~-~~---~~--p~LIVvP~sll~-q---W~~E~ 352 (1272)
..+.|-|..++-.+ .+++.+.+-..||+|||+.-+.-+..+. . .. ++ -.|||+|+--|. | -...|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 46889999998877 7889999999999999988655555444 2 21 12 459999975553 3 33445
Q ss_pred HHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hhccCCCc
Q 000811 353 ATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIK 428 (1272)
Q Consensus 353 ~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----~~~L~~~~ 428 (1272)
....|++++.++.|...-.+.+..+. ....+|+|.|+..+... ...+.-..
T Consensus 103 ~~~l~~l~~~l~vGG~~v~~Di~~fk-------------------------ee~~nIlVgTPGRL~di~~~~~~~l~~rs 157 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVEEDIKTFK-------------------------EEGPNILVGTPGRLLDILQREAEKLSFRS 157 (567)
T ss_pred HHhhhccceEEEecCccHHHHHHHHH-------------------------HhCCcEEEeCchhHHHHHhchhhhccccc
Confidence 55678999999999977666555431 23567999999776443 33355445
Q ss_pred ceeEEeccccccCCc--chHHHHHHHhcccccEE-EEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000811 429 WQCMIVDEGHRLKNK--DSKLFSSLKQYSTRHRV-LLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~--~S~~~~~l~~l~~~~rl-lLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1272)
..++|+|||.|+-.. ...+...|..+...+|- |.|||-- ..+
T Consensus 158 Le~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~-----------------------------------~~v 202 (567)
T KOG0345|consen 158 LEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQT-----------------------------------QEV 202 (567)
T ss_pred cceEEecchHhHhcccHHHHHHHHHHhcccccccccccchhh-----------------------------------HHH
Confidence 679999999999654 45566777777776665 4577731 011
Q ss_pred HHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000811 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1272)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L 585 (1272)
+.|.. .-|| ......|... . ......++.+ -|
T Consensus 203 ~dL~r----aGLR-----------Npv~V~V~~k--~-------------------~~~tPS~L~~-----------~Y- 234 (567)
T KOG0345|consen 203 EDLAR----AGLR-----------NPVRVSVKEK--S-------------------KSATPSSLAL-----------EY- 234 (567)
T ss_pred HHHHH----hhcc-----------Cceeeeeccc--c-------------------cccCchhhcc-----------ee-
Confidence 11110 0111 0001111000 0 0000000000 00
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--CCCcEEEEeCCCCHHHH
Q 000811 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAER 663 (1272)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~~R 663 (1272)
..+.+.-|+..|..+|.. ....|+|||...-...++....|.. .+.+++-|+|.++...|
T Consensus 235 ----------------~v~~a~eK~~~lv~~L~~--~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R 296 (567)
T KOG0345|consen 235 ----------------LVCEADEKLSQLVHLLNN--NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKAR 296 (567)
T ss_pred ----------------eEecHHHHHHHHHHHHhc--cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhH
Confidence 112344577777777766 3457999998887777776666643 57899999999999999
Q ss_pred HHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEE
Q 000811 664 QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1272)
Q Consensus 664 q~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrl 732 (1272)
..++..|.+..++ +|++|.+++.|||++..|.||.||||-+|..+.+|.||..|.|......||-.
T Consensus 297 ~k~~~~F~~~~~~---vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 297 AKVLEAFRKLSNG---VLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred HHHHHHHHhccCc---eEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999999874444 79999999999999999999999999999999999999999998877666543
No 65
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=7.1e-16 Score=193.15 Aligned_cols=131 Identities=19% Similarity=0.204 Sum_probs=109.2
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
....|+..|...+......|.+|||||......+.|...|...|+++..++|.+...++..+...+.. + .++|+|
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~---g--~VlIAT 483 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQK---G--AVTVAT 483 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCC---C--eEEEEc
Confidence 34678999999998887889999999999999999999999999999999999887777666555532 2 379999
Q ss_pred cccccccCc---cCCC-----EEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 000811 685 RAGGLGINL---ATAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1272)
Q Consensus 685 ragg~GINL---~~Ad-----~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~ 745 (1272)
..+|+|+|+ +.+. +||.+|.+-|+..+.|+.||++|.|....+.. |+ |.|+.++.+
T Consensus 484 dmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 484 NMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred cchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 999999999 4777 99999999999999999999999998864432 33 335555543
No 66
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.72 E-value=4.7e-16 Score=187.43 Aligned_cols=306 Identities=20% Similarity=0.215 Sum_probs=212.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
..+||-|.+++..+ ..++++|.-..||.||++..- |-.+.. .|.+|||.|+ |++....+.+..-. +.+.
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~--~G~TLVVSPLiSLM~DQV~~l~~~G--i~A~ 85 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL--EGLTLVVSPLISLMKDQVDQLEAAG--IRAA 85 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc--CCCEEEECchHHHHHHHHHHHHHcC--ceee
Confidence 45888999998877 678999999999999998742 122222 4599999995 88888888887753 5555
Q ss_pred EEEcC--hhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeEEecccc
Q 000811 363 MYVGT--SQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 363 ~~~G~--~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~vIvDEaH 438 (1272)
.+.++ ..++..+... ......+++..|+|.+... ...|...+..+++|||||
T Consensus 86 ~lnS~l~~~e~~~v~~~------------------------l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAH 141 (590)
T COG0514 86 YLNSTLSREERQQVLNQ------------------------LKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAH 141 (590)
T ss_pred hhhcccCHHHHHHHHHH------------------------HhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHH
Confidence 55443 2333322221 1124678999999998765 455678889999999999
Q ss_pred ccCCcc-------hHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHH
Q 000811 439 RLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1272)
Q Consensus 439 rlKn~~-------S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1272)
.+...+ ..+......+...-+++||||--+--..|+-..|..-.+..|-..
T Consensus 142 CiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~s---------------------- 199 (590)
T COG0514 142 CISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGS---------------------- 199 (590)
T ss_pred HHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEec----------------------
Confidence 986543 344555555565678999998643333344333333222221100
Q ss_pred hhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000811 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1272)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~ 591 (1272)
+ .. -|+..+.+..
T Consensus 200 --------------------------f--------------------------dR---pNi~~~v~~~------------ 212 (590)
T COG0514 200 --------------------------F--------------------------DR---PNLALKVVEK------------ 212 (590)
T ss_pred --------------------------C--------------------------CC---chhhhhhhhc------------
Confidence 0 00 0010000000
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000811 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1272)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn 671 (1272)
.+.--++.+|.+ .....+...||||......+.|...|...|++...++|+++.++|+..-+.|+
T Consensus 213 ------------~~~~~q~~fi~~---~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~ 277 (590)
T COG0514 213 ------------GEPSDQLAFLAT---VLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFL 277 (590)
T ss_pred ------------ccHHHHHHHHHh---hccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHh
Confidence 000011112222 12233456899999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 672 ~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
.++.. ++++|.|.|.|||=++.-.||+||.|-+...|.|-+|||+|-|....+.++
T Consensus 278 ~~~~~---iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~aill 333 (590)
T COG0514 278 NDEIK---VMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAILL 333 (590)
T ss_pred cCCCc---EEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEEe
Confidence 75554 899999999999999999999999999999999999999999988766543
No 67
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=5e-16 Score=190.74 Aligned_cols=131 Identities=18% Similarity=0.226 Sum_probs=106.1
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
....|...|.+++..+...|..||||+..+...+.|...|...|+++..|+|... +|+..+..|.... + .++|+|
T Consensus 454 t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~-g--~VlVAT 528 (656)
T PRK12898 454 TAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR-G--RITVAT 528 (656)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC-C--cEEEEc
Confidence 3456899999999988878899999999999999999999999999999999854 5666666664322 2 379999
Q ss_pred cccccccCcc---CCC-----EEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHH
Q 000811 685 RAGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQM 745 (1272)
Q Consensus 685 ragg~GINL~---~Ad-----~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~ 745 (1272)
..+|.|+|+. .+. +||.||.+-|+..|.|++||++|.|..-.+. .|+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~--~~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYE--AIL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEE--EEe---chhHHHHHh
Confidence 9999999998 443 9999999999999999999999999775443 333 235555543
No 68
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.71 E-value=4.4e-17 Score=200.69 Aligned_cols=119 Identities=18% Similarity=0.175 Sum_probs=106.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+.+.++.+.|..|||||..+...+.|..+|...|+++..++|. ..+|+..|..|.... ..++|+|.
T Consensus 387 ~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~---g~VtIATn 461 (745)
T TIGR00963 387 EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRK---GAVTIATN 461 (745)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCC---ceEEEEec
Confidence 3468888888888889999999999999999999999999999999999998 778999999995433 35899999
Q ss_pred ccccccCccC-------CCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 686 AGGLGINLAT-------ADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 686 agg~GINL~~-------Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
.+|+|+|+.. .-+||.++.+-|+..+.|+.||++|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999988 6699999999999999999999999998865543
No 69
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.70 E-value=2e-15 Score=188.29 Aligned_cols=322 Identities=16% Similarity=0.195 Sum_probs=194.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH----------HHHh--h-C-CCCcEEEEecCc-cHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL----------ASLF--G-E-RISPHLVVAPLS-TLRNW 348 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l----------~~l~--~-~-~~~p~LIVvP~s-ll~qW 348 (1272)
..|++.|...-.-+...+..++.+|+..+||+|||.|.--++ ..+. . . ..++++|++|.- +..|.
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi 238 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLH 238 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHH
Confidence 578888888877777888899999999999999998842222 1111 1 1 234899999964 44666
Q ss_pred HHHHHHHC-----CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc
Q 000811 349 EREFATWA-----PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS 423 (1272)
Q Consensus 349 ~~E~~~~~-----p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~ 423 (1272)
..++.+.. +...+.+.+|+..... ... .....+++|.|..... ..
T Consensus 239 ~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~--~~t-------------------------~~k~~~Ilv~T~~L~l---~~ 288 (675)
T PHA02653 239 SITLLKSLGFDEIDGSPISLKYGSIPDEL--INT-------------------------NPKPYGLVFSTHKLTL---NK 288 (675)
T ss_pred HHHHHHHhCccccCCceEEEEECCcchHH--hhc-------------------------ccCCCCEEEEeCcccc---cc
Confidence 77776432 3455666666654211 000 0114578888754311 12
Q ss_pred cCCCcceeEEeccccccCCcchHHHHHHHhccc--ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhh
Q 000811 424 LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ 501 (1272)
Q Consensus 424 L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~--~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~ 501 (1272)
| -..++|||||||..-.....+...++.+.. +..+++|||.- .....+ ..|+..
T Consensus 289 L--~~v~~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~-~dv~~l---~~~~~~------------------ 344 (675)
T PHA02653 289 L--FDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE-DDRDRI---KEFFPN------------------ 344 (675)
T ss_pred c--ccCCEEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc-HhHHHH---HHHhcC------------------
Confidence 3 246789999999986555444444444322 35799999972 111111 111110
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000811 502 EEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1272)
Q Consensus 502 ~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1272)
+..+. .. ...+.|.....+.....+.+...|-.
T Consensus 345 ------------p~~I~-I~---grt~~pV~~~yi~~~~~~~~~~~y~~------------------------------- 377 (675)
T PHA02653 345 ------------PAFVH-IP---GGTLFPISEVYVKNKYNPKNKRAYIE------------------------------- 377 (675)
T ss_pred ------------CcEEE-eC---CCcCCCeEEEEeecCcccccchhhhH-------------------------------
Confidence 00000 00 00111222222211111111110000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC--CCcEEEEeCCCC
Q 000811 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVG 659 (1272)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~ 659 (1272)
..|..++..+.......+.++|||+.....++.+...|... ++.+..++|+++
T Consensus 378 -------------------------~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Ls 432 (675)
T PHA02653 378 -------------------------EEKKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVP 432 (675)
T ss_pred -------------------------HHHHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcC
Confidence 00111111111111124568999999999999999999876 799999999998
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEec----CC--------CChhhHHHHHHhhhhcCCCCce
Q 000811 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SD--------WNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 660 ~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D----~d--------WNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
.. ++++++|.. +++..+|+||..++.||+++.+++||-++ |. .+...+.||.||++|. ++-
T Consensus 433 q~--eq~l~~ff~--~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G 505 (675)
T PHA02653 433 NI--DEILEKVYS--SKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPG 505 (675)
T ss_pred HH--HHHHHHHhc--cCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCC
Confidence 64 567778742 24456899999999999999999999987 21 2666788888888887 467
Q ss_pred EEEEEeeCCCH
Q 000811 728 MIFRLITRGSI 738 (1272)
Q Consensus 728 ~Vyrlit~~Tv 738 (1272)
.+|+|+++...
T Consensus 506 ~c~rLyt~~~~ 516 (675)
T PHA02653 506 TYVYFYDLDLL 516 (675)
T ss_pred eEEEEECHHHh
Confidence 88999988764
No 70
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.70 E-value=1.6e-15 Score=200.10 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=84.1
Q ss_pred cCceEEEEecchhhHHHHHHHHHhCC---------------------------------CcEEEEeCCCCHHHHHHHHHH
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---------------------------------WQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~~g---------------------------------~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
.+.++|||++.....+.|...|+... +....++|+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 47899999999999999988886431 114567899999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhc
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRi 721 (1272)
|.++. ..+|++|.+++.|||+..+|+||+|+++.+...++|++||++|.
T Consensus 323 fK~G~---LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSGE---LRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhCC---ceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 97644 45899999999999999999999999999999999999999885
No 71
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.1e-15 Score=178.22 Aligned_cols=310 Identities=19% Similarity=0.264 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCC-----------CcEEEEecC-ccHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI-----------SPHLVVAPL-STLRNWER 350 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~-----------~p~LIVvP~-sll~qW~~ 350 (1272)
..+.|+|..++.-+ ..|++.+.+.++|+|||..- |-++.+++..+. ...||++|+ .+..|-.+
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 35778999988766 78899999999999999875 455566665421 257999997 56688889
Q ss_pred HHHHHC--CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh----cc
Q 000811 351 EFATWA--PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SL 424 (1272)
Q Consensus 351 E~~~~~--p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~----~L 424 (1272)
|..++. ..++.++.+|..+.+...+.. ...+|++++|...+..-.. .|
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~--------------------------~~gcdIlvaTpGrL~d~~e~g~i~l 224 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFI--------------------------KRGCDILVATPGRLKDLIERGKISL 224 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhh--------------------------ccCccEEEecCchhhhhhhcceeeh
Confidence 998886 346666666665555433331 2478999999988754321 23
Q ss_pred CCCcceeEEeccccccCC---cchHHHHHHHhcc-----cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHH
Q 000811 425 KPIKWQCMIVDEGHRLKN---KDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEF 496 (1272)
Q Consensus 425 ~~~~w~~vIvDEaHrlKn---~~S~~~~~l~~l~-----~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f 496 (1272)
..+ .++|+|||.++-. ..-.+.+.+.... ...-++.|||--
T Consensus 225 ~~~--k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp----------------------------- 273 (482)
T KOG0335|consen 225 DNC--KFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP----------------------------- 273 (482)
T ss_pred hhC--cEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCC-----------------------------
Confidence 333 4899999999854 2223444443332 234566777620
Q ss_pred hhhhhHHHHHHHHHHhhhhhHH-HHH---hhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 000811 497 KDINQEEQISRLHRMLAPHLLR-RVK---KDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINV 572 (1272)
Q Consensus 497 ~~~~~~~~i~~L~~~L~p~~lR-R~k---~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~ 572 (1272)
..+.+ +...|+.- .+. .-|...-......+++|.
T Consensus 274 ------~~iq~---l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~--------------------------------- 311 (482)
T KOG0335|consen 274 ------KEIQR---LAADFLKDNYIFLAVGRVGSTSENITQKILFVN--------------------------------- 311 (482)
T ss_pred ------hhhhh---hHHHHhhccceEEEEeeeccccccceeEeeeec---------------------------------
Confidence 00111 00000000 000 000000111111222222
Q ss_pred HHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHH---H----cCceEEEEecchhhHHHHHHHHH
Q 000811 573 VMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLK---E----QGHRVLIYSQFQHMLDLLEDYLT 645 (1272)
Q Consensus 573 l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~---~----~g~KVLIFsq~~~~ldiL~~~L~ 645 (1272)
...|...|.++|.... . .-++++||+...++++.|..+|.
T Consensus 312 ---------------------------------~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~ 358 (482)
T KOG0335|consen 312 ---------------------------------EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLS 358 (482)
T ss_pred ---------------------------------chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHh
Confidence 1222223333333222 1 12589999999999999999999
Q ss_pred hCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC
Q 000811 646 FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 646 ~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k 725 (1272)
..++++.-|+|..++.+|.++++.|...... +|++|.+++.|||++.+.+||+||.+-+-..|++++||.+|.|+.-
T Consensus 359 ~~~~~~~sIhg~~tq~er~~al~~Fr~g~~p---vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G 435 (482)
T KOG0335|consen 359 SNGYPAKSIHGDRTQIEREQALNDFRNGKAP---VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGG 435 (482)
T ss_pred cCCCCceeecchhhhhHHHHHHHHhhcCCcc---eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCc
Confidence 9999999999999999999999999875554 8999999999999999999999999999999999999999999997
Q ss_pred ceEEEEE
Q 000811 726 KVMIFRL 732 (1272)
Q Consensus 726 ~V~Vyrl 732 (1272)
.++.|.-
T Consensus 436 ~atsf~n 442 (482)
T KOG0335|consen 436 RATSFFN 442 (482)
T ss_pred eeEEEec
Confidence 6665443
No 72
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.69 E-value=1.1e-15 Score=185.27 Aligned_cols=353 Identities=16% Similarity=0.195 Sum_probs=217.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCC-ceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEec-CccHHHHHHHHHHHCCCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~-~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP-~sll~qW~~E~~~~~p~~ 359 (1272)
...+|+||..+++.+...+.+|+ .++|.+.+|+|||.+||+++..|.+.+ .+++|+++- ++++.|=..+|..+.|+.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 46799999999999999888765 488999999999999999999998864 569999999 677888888999999987
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh-------ccCCCcceeE
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCM 432 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~-------~L~~~~w~~v 432 (1272)
..+.+..... ....+.|+|+||.++..... .+..-.||+|
T Consensus 243 ~~~n~i~~~~---------------------------------~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlI 289 (875)
T COG4096 243 TKMNKIEDKK---------------------------------GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLI 289 (875)
T ss_pred cceeeeeccc---------------------------------CCcceeEEEeehHHHHhhhhccccccccCCCCceeEE
Confidence 6665543221 11257899999999976432 2333358999
Q ss_pred EeccccccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHh
Q 000811 433 IVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRML 512 (1272)
Q Consensus 433 IvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L 512 (1272)
|||||||- ..+ .++.+..+-...+++|||||-..--..-|.+++ +.
T Consensus 290 vIDEaHRg--i~~-~~~~I~dYFdA~~~gLTATP~~~~d~~T~~~F~-----------------g~-------------- 335 (875)
T COG4096 290 VIDEAHRG--IYS-EWSSILDYFDAATQGLTATPKETIDRSTYGFFN-----------------GE-------------- 335 (875)
T ss_pred Eechhhhh--HHh-hhHHHHHHHHHHHHhhccCcccccccccccccC-----------------CC--------------
Confidence 99999983 222 223444444556777799995421111111111 00
Q ss_pred hhhhHHHHHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000811 513 APHLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1272)
Q Consensus 513 ~p~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~ 591 (1272)
|....-.+..|.. .|-|...+.+.+.....- -.|....++ ..+. .+. ++. +
T Consensus 336 -Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G-~~~~~~ser--ek~~----------------g~~------i~~--d 387 (875)
T COG4096 336 -PTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDG-WKPDAGSER--EKLQ----------------GEA------IDE--D 387 (875)
T ss_pred -cceeecHHHHhhccccCCCCceEEeeeccccC-cCcCccchh--hhhh----------------ccc------cCc--c
Confidence 0000011112222 233333333332211100 001111000 0000 000 000 0
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHc---C---ceEEEEecchhhHHHHHHHHHhC-----CCcEEEEeCCCCH
Q 000811 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQ---G---HRVLIYSQFQHMLDLLEDYLTFK-----KWQYERIDGKVGG 660 (1272)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~---g---~KVLIFsq~~~~ldiL~~~L~~~-----g~~~~ridG~~~~ 660 (1272)
+.......+..-+.....-..+.+.+.....+ | .|.||||......+.|...|... |-=+..|+|....
T Consensus 388 d~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~ 467 (875)
T COG4096 388 DQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ 467 (875)
T ss_pred cccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh
Confidence 00000000011111122233444555544444 3 49999999999999999998653 3336688888754
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcC-------CCC-ceEEEEE
Q 000811 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG-------QTN-KVMIFRL 732 (1272)
Q Consensus 661 ~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiG-------Q~k-~V~Vyrl 732 (1272)
=++.|+.|-. +...-.+.+|..-+.+|||.+.+-.+||+-.--+-..+.|.+||+-|+- |.| ...||.+
T Consensus 468 --~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf 544 (875)
T COG4096 468 --AQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDF 544 (875)
T ss_pred --hHHHHHHHHh-cCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccccCccccCccccceeEEEEEh
Confidence 4667999976 3333357899999999999999999999999999999999999999953 433 4667776
Q ss_pred e
Q 000811 733 I 733 (1272)
Q Consensus 733 i 733 (1272)
+
T Consensus 545 ~ 545 (875)
T COG4096 545 V 545 (875)
T ss_pred h
Confidence 5
No 73
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.68 E-value=1.6e-15 Score=173.83 Aligned_cols=339 Identities=17% Similarity=0.244 Sum_probs=212.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHh---------hCCCC-cEEEEecCccH-HHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLF---------GERIS-PHLVVAPLSTL-RNWEREF 352 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~---------~~~~~-p~LIVvP~sll-~qW~~E~ 352 (1272)
...|.|..++--+ .++++.|...|+|+|||..- |-++..+. +...+ ..+|++|+--| .|-..|-
T Consensus 267 eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 267 EPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 4678888887644 67899999999999999542 22222221 11123 56899998655 5667777
Q ss_pred HHHCC--CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCc
Q 000811 353 ATWAP--QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIK 428 (1272)
Q Consensus 353 ~~~~p--~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~ 428 (1272)
.+|+- .++++...|...--.. .| .-...++++|.|+..+..-. ..|-.-.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq----~f----------------------qls~gceiviatPgrLid~Lenr~lvl~q 396 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQ----GF----------------------QLSMGCEIVIATPGRLIDSLENRYLVLNQ 396 (673)
T ss_pred HHhcccccceEEEEecccchhhh----hh----------------------hhhccceeeecCchHHHHHHHHHHHHhcc
Confidence 77762 3667777766432110 00 01246789999998875432 2233335
Q ss_pred ceeEEeccccccCCcc--hHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHH
Q 000811 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQIS 506 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~ 506 (1272)
..+||+|||.++-... -...+.|..+.+ .|- .| +.+++ +...
T Consensus 397 ctyvvldeadrmiDmgfE~dv~~iL~~mPs-----------sn~-----------k~----~tde~----------~~~~ 440 (673)
T KOG0333|consen 397 CTYVVLDEADRMIDMGFEPDVQKILEQMPS-----------SNA-----------KP----DTDEK----------EGEE 440 (673)
T ss_pred CceEeccchhhhhcccccHHHHHHHHhCCc-----------ccc-----------CC----Cccch----------hhHH
Confidence 5789999999874322 222232322211 110 00 11111 1111
Q ss_pred HHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000811 507 RLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1272)
Q Consensus 507 ~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~ 586 (1272)
.+.+.+.. .| --..-....+.|++.-..+-+..+.+ |..+
T Consensus 441 ~~~~~~~~-----~k-------~yrqT~mftatm~p~verlar~ylr~----------------------------pv~v 480 (673)
T KOG0333|consen 441 RVRKNFSS-----SK-------KYRQTVMFTATMPPAVERLARSYLRR----------------------------PVVV 480 (673)
T ss_pred HHHhhccc-----cc-------ceeEEEEEecCCChHHHHHHHHHhhC----------------------------CeEE
Confidence 11111100 00 00112234456666544443333222 2211
Q ss_pred c-CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q 000811 587 E-GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 587 ~-~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~ 665 (1272)
. +.........+..-.++..+.|...|.++|... ...++|||.+....+|.|.+.|...||++++++|+.++++|+.
T Consensus 481 tig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~--~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~ 558 (673)
T KOG0333|consen 481 TIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN--FDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQREN 558 (673)
T ss_pred EeccCCCCccchheEEEEecchHHHHHHHHHHHhC--CCCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHH
Confidence 1 111111111111122345677877777777764 3569999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
++..|.++..+ +|++|.++|.||+++.+++||.||..-+-..|.++|||.+|.|+...+. -|+|..
T Consensus 559 aL~~fr~~t~d---IlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~Gtai--Sflt~~ 624 (673)
T KOG0333|consen 559 ALADFREGTGD---ILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAI--SFLTPA 624 (673)
T ss_pred HHHHHHhcCCC---EEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeE--EEeccc
Confidence 99999986666 8999999999999999999999999999999999999999999987654 355543
No 74
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.68 E-value=8.7e-16 Score=175.78 Aligned_cols=308 Identities=19% Similarity=0.284 Sum_probs=204.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHH-hhC----CCC-cEEEEecCccH-HHHHHH---HHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASL-FGE----RIS-PHLVVAPLSTL-RNWERE---FAT 354 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l-~~~----~~~-p~LIVvP~sll-~qW~~E---~~~ 354 (1272)
+|.+-|...+.=+ ..|..++.+.-+|+|||+..+.-+..+ +.. +.+ .+|||||+--| .|-..| +.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 5788888877655 678899999999999998754333333 222 122 68999997555 454444 455
Q ss_pred HCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCC---ccee
Q 000811 355 WAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI---KWQC 431 (1272)
Q Consensus 355 ~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~---~w~~ 431 (1272)
+.+...+.+..|...-+...... . ...+++|.|+..+......-..+ .-.+
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl-------------------------~-k~~niliATPGRLlDHlqNt~~f~~r~~k~ 233 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKL-------------------------V-KGCNILIATPGRLLDHLQNTSGFLFRNLKC 233 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHh-------------------------h-ccccEEEeCCchHHhHhhcCCcchhhccce
Confidence 66677777777766544332221 1 26789999999886543322221 2268
Q ss_pred EEeccccccCCcc--hHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 432 MIVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 432 vIvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
+|+|||.|+-..+ --+-+.+..+. ....+|.|||-
T Consensus 234 lvlDEADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~------------------------------------------ 271 (543)
T KOG0342|consen 234 LVLDEADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQ------------------------------------------ 271 (543)
T ss_pred eEeecchhhhhcccHHHHHHHHHhccccceeeEeeCCC------------------------------------------
Confidence 9999999985432 23334444443 23446677773
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
++.-+++.+-++.+ . |..++.
T Consensus 272 --------------------------------~~kV~~l~~~~L~~--------------------------d-~~~v~~ 292 (543)
T KOG0342|consen 272 --------------------------------PSKVKDLARGALKR--------------------------D-PVFVNV 292 (543)
T ss_pred --------------------------------cHHHHHHHHHhhcC--------------------------C-ceEeec
Confidence 11111111000000 0 000111
Q ss_pred CCCCcccchHHHHH---HHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q 000811 589 VEPDIEDTNESFKQ---LLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~---li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~ 665 (1272)
..+....+.+.+.+ +.....++.+|..+|++.... .||+||+....+...+.+.|+...+++.-|+|..++..|..
T Consensus 293 ~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~ 371 (543)
T KOG0342|consen 293 DDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTS 371 (543)
T ss_pred CCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccch
Confidence 11111111111111 111234567777888776543 89999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCce
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
+..+|.+..++ +|++|.++++|+|.+.+|.||-||++-+|.+|++|+||..|.|-+...
T Consensus 372 ~~~~F~kaesg---IL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~a 430 (543)
T KOG0342|consen 372 TFFEFCKAESG---ILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKA 430 (543)
T ss_pred HHHHHhhcccc---eEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceE
Confidence 99999988887 899999999999999999999999999999999999999997766443
No 75
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.68 E-value=6.1e-15 Score=177.13 Aligned_cols=305 Identities=17% Similarity=0.283 Sum_probs=204.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCC--CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH-HHHHHHHHHHCC--C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQ--THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAP--Q 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~--~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~~~~p--~ 358 (1272)
.+|...|..+++=+..-.... .+-+|--++|+|||+.|+..+......+ .-...++|+.+| .|-.+.|.+|++ +
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC-CeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 578899999998775444443 3458899999999999877666666554 367889999888 678889999996 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
++|...+|+-.....-...+ .......|+||-|+..+.....+ .+..+|||||=|
T Consensus 340 i~V~lLtG~~kgk~r~~~l~----------------------~l~~G~~~ivVGTHALiQd~V~F---~~LgLVIiDEQH 394 (677)
T COG1200 340 IRVALLTGSLKGKARKEILE----------------------QLASGEIDIVVGTHALIQDKVEF---HNLGLVIIDEQH 394 (677)
T ss_pred CeEEEeecccchhHHHHHHH----------------------HHhCCCCCEEEEcchhhhcceee---cceeEEEEeccc
Confidence 77888888765433211111 01235678999999988644332 245799999999
Q ss_pred ccCCcchHHHHHHHhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 000811 439 RLKNKDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1272)
|+.- .....|+.-. ..|.|.|||||++-.+. ...|+++.-
T Consensus 395 RFGV---~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--------------------lt~fgDldv--------------- 436 (677)
T COG1200 395 RFGV---HQRLALREKGEQNPHVLVMTATPIPRTLA--------------------LTAFGDLDV--------------- 436 (677)
T ss_pred cccH---HHHHHHHHhCCCCCcEEEEeCCCchHHHH--------------------HHHhccccc---------------
Confidence 9853 3344444432 57999999999866542 111222111
Q ss_pred HHHHHhhHhhcCCCceeEEEeecCC-HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCccc
Q 000811 517 LRRVKKDVMKELPPKKELILRVELS-SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIED 595 (1272)
Q Consensus 517 lRR~k~dv~~~LP~k~e~~v~v~ls-~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~ 595 (1272)
.+++.+||..--+...-+. ..-.++|..+.
T Consensus 437 ------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~------------------------------------------- 467 (677)
T COG1200 437 ------SIIDELPPGRKPITTVVIPHERRPEVYERIR------------------------------------------- 467 (677)
T ss_pred ------hhhccCCCCCCceEEEEeccccHHHHHHHHH-------------------------------------------
Confidence 2345788763322222211 11122232221
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh--------HHHHHHHHH--hCCCcEEEEeCCCCHHHHHH
Q 000811 596 TNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM--------LDLLEDYLT--FKKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~--------ldiL~~~L~--~~g~~~~ridG~~~~~~Rq~ 665 (1272)
+-..+|+++.+.|.-+.. ...+...|. ..++++..++|.++.+++++
T Consensus 468 -----------------------~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~ 524 (677)
T COG1200 468 -----------------------EEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDA 524 (677)
T ss_pred -----------------------HHHHcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHH
Confidence 112246666666555432 222333333 23677999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhhhcCCCCce
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~d-WNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
++.+|.++..+ +|+||.+-.+|||++.|+.+||++.+ +--++.-|-.||++|=+...-|
T Consensus 525 vM~~Fk~~e~~---ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC 584 (677)
T COG1200 525 VMEAFKEGEID---ILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYC 584 (677)
T ss_pred HHHHHHcCCCc---EEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEE
Confidence 99999876555 89999999999999999999999996 7888999999999995544433
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.67 E-value=1.2e-14 Score=171.39 Aligned_cols=85 Identities=24% Similarity=0.292 Sum_probs=71.5
Q ss_pred cCceEEEEecchhhHHHHHHHHHhCC--CcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTFKK--WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~~g--~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI 700 (1272)
.+.++|||++....++.+...|...+ +.+..++|.++..+|.++. ...+|++|.+++.|||+.. +.||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~---------~~~iLVaTdv~~rGiDi~~-~~vi 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM---------QFDILLGTSTVDVGVDFKR-DWLI 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc---------cCCEEEEecHHhcccCCCC-ceEE
Confidence 57899999999999999999998764 5788999999999887653 2348999999999999986 4666
Q ss_pred EecCCCChhhHHHHHHhhh
Q 000811 701 IYDSDWNPHADLQAMARAH 719 (1272)
Q Consensus 701 i~D~dWNp~~~~Qa~gRah 719 (1272)
++ +-++..++||+||++
T Consensus 341 -~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 -FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred -EC-CCCHHHHhhhcccCC
Confidence 66 567889999999874
No 77
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=7.8e-15 Score=168.51 Aligned_cols=117 Identities=16% Similarity=0.369 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHH--cCceEEEEecchhhHHHHHHHHH----h------------------CCCcEEEEeCCCCHHHHHH
Q 000811 610 LQLLDKMMVKLKE--QGHRVLIYSQFQHMLDLLEDYLT----F------------------KKWQYERIDGKVGGAERQI 665 (1272)
Q Consensus 610 l~~L~klL~~l~~--~g~KVLIFsq~~~~ldiL~~~L~----~------------------~g~~~~ridG~~~~~~Rq~ 665 (1272)
+..|..+|....+ ...|+|||....++++.=.+.|. . .+.++.|++|+|++++|..
T Consensus 409 LV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 409 LVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred HHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 3445555555432 24588999887777665444332 1 2446999999999999999
Q ss_pred HHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEE
Q 000811 666 RIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 729 (1272)
Q Consensus 666 ~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~V 729 (1272)
+...|..... ++|+||.+++.||||+.+..||-||++..+..+++|+||.-|+|-+.....
T Consensus 489 ~f~~Fs~~~~---~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL 549 (708)
T KOG0348|consen 489 VFQEFSHSRR---AVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL 549 (708)
T ss_pred HHHhhccccc---eEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE
Confidence 9999976554 489999999999999999999999999999999999999999999876554
No 78
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.66 E-value=5.8e-16 Score=171.01 Aligned_cols=319 Identities=19% Similarity=0.303 Sum_probs=211.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhh--------CCCCcE-EEEecCccH-HHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFG--------ERISPH-LVVAPLSTL-RNWEREFA 353 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~--------~~~~p~-LIVvP~sll-~qW~~E~~ 353 (1272)
...|.|++|+--+ ..|+..|=..=+|+|||++. +-++...+. .+.||+ |||||..-| .|-..-+.
T Consensus 192 ~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 192 HPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 5678999998654 56788887778999999873 333332222 234565 999997555 34333333
Q ss_pred HH--------CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhc
Q 000811 354 TW--------APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SAS 423 (1272)
Q Consensus 354 ~~--------~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~ 423 (1272)
.+ .|.++.....|.-.-+..+... ....|+++.|+..+..- ...
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v--------------------------~~GvHivVATPGRL~DmL~KK~ 321 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVV--------------------------RRGVHIVVATPGRLMDMLAKKI 321 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHH--------------------------hcCeeEEEcCcchHHHHHHHhh
Confidence 33 2667777777776665543321 23578999999877432 111
Q ss_pred cCCCcceeEEeccccccCCc--chHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000811 424 LKPIKWQCMIVDEGHRLKNK--DSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1272)
Q Consensus 424 L~~~~w~~vIvDEaHrlKn~--~S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~ 500 (1272)
+.---..++.+|||.|+-.. ...+...+.-|++ +..||.|||- |.. ...|.
T Consensus 322 ~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTLLFSATM----------------P~K-------IQ~FA--- 375 (610)
T KOG0341|consen 322 MSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTLLFSATM----------------PKK-------IQNFA--- 375 (610)
T ss_pred ccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhheeeeeccc----------------cHH-------HHHHH---
Confidence 11123468999999998543 3334444445554 3468888883 100 00000
Q ss_pred hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHh
Q 000811 501 QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLC 580 (1272)
Q Consensus 501 ~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c 580 (1272)
-..+++| ..|.|. .....-++++.+
T Consensus 376 -------kSALVKP-------------------vtvNVG------------------------RAGAAsldViQe----- 400 (610)
T KOG0341|consen 376 -------KSALVKP-------------------VTVNVG------------------------RAGAASLDVIQE----- 400 (610)
T ss_pred -------Hhhcccc-------------------eEEecc------------------------cccccchhHHHH-----
Confidence 0011111 122221 011111222221
Q ss_pred CCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCH
Q 000811 581 CHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG 660 (1272)
Q Consensus 581 ~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~ 660 (1272)
-..+....|+..|.+.|++ ..-+||||+.-..-+|-|.+||-.+|...+.|+|+..+
T Consensus 401 --------------------vEyVkqEaKiVylLeCLQK---T~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQ 457 (610)
T KOG0341|consen 401 --------------------VEYVKQEAKIVYLLECLQK---TSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQ 457 (610)
T ss_pred --------------------HHHHHhhhhhhhHHHHhcc---CCCceEEEeccccChHHHHHHHHHccceeEEeecCcch
Confidence 1234455677776666654 56699999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHH
Q 000811 661 AERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1272)
Q Consensus 661 ~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE 740 (1272)
++|..+|+.|..+..+ +|++|.+++-|++++...+||.||.+-.-.+|.+++||.+|-|.+.-.+ .||-+++-|.
T Consensus 458 edR~~ai~afr~gkKD---VLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiAT--TfINK~~~es 532 (610)
T KOG0341|consen 458 EDRHYAIEAFRAGKKD---VLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIAT--TFINKNQEES 532 (610)
T ss_pred hHHHHHHHHHhcCCCc---eEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceee--eeecccchHH
Confidence 9999999999886665 8999999999999999999999999999999999999999999876443 3666666444
Q ss_pred HH
Q 000811 741 RM 742 (1272)
Q Consensus 741 ~I 742 (1272)
-+
T Consensus 533 vL 534 (610)
T KOG0341|consen 533 VL 534 (610)
T ss_pred HH
Confidence 43
No 79
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.65 E-value=1.4e-14 Score=166.72 Aligned_cols=325 Identities=15% Similarity=0.245 Sum_probs=224.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCC----C-cEEEEecCccH-HHHHHHHHHHC-
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERI----S-PHLVVAPLSTL-RNWEREFATWA- 356 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~----~-p~LIVvP~sll-~qW~~E~~~~~- 356 (1272)
.|..-|...+-.. ..|..+|-|.-||+|||+.. +-+|..|+..+. | -.|||.|+--| .|-..-+.+-.
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4777888887544 57888999999999999874 566677776543 2 68999997544 55544454433
Q ss_pred -CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hhccCCCcceeE
Q 000811 357 -PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCM 432 (1272)
Q Consensus 357 -p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d---~~~L~~~~w~~v 432 (1272)
..+..-.+.|..+...... .....+|+|+|+..+... ...|..-...++
T Consensus 167 ~h~fSaGLiiGG~~~k~E~e---------------------------Ri~~mNILVCTPGRLLQHmde~~~f~t~~lQmL 219 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELE---------------------------RISQMNILVCTPGRLLQHMDENPNFSTSNLQML 219 (758)
T ss_pred ccccccceeecCchhHHHHH---------------------------hhhcCCeEEechHHHHHHhhhcCCCCCCcceEE
Confidence 2566666777765432211 224678999999998764 334566678899
Q ss_pred EeccccccCCcc--hHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
|+|||.|+-..+ ..+-..+..+. .+..||.|||+- +++.+|.-|
T Consensus 220 vLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt-~svkdLaRL-------------------------------- 266 (758)
T KOG0343|consen 220 VLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQT-KSVKDLARL-------------------------------- 266 (758)
T ss_pred EeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccc-hhHHHHHHh--------------------------------
Confidence 999999986543 34555566665 446799999983 222222210
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEe---ecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILR---VELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~---v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~ 586 (1272)
.|.......|. +.-+|. .|++. |+
T Consensus 267 -----------------sL~dP~~vsvhe~a~~atP~-------------------------------~L~Q~----y~- 293 (758)
T KOG0343|consen 267 -----------------SLKDPVYVSVHENAVAATPS-------------------------------NLQQS----YV- 293 (758)
T ss_pred -----------------hcCCCcEEEEeccccccChh-------------------------------hhhhe----EE-
Confidence 11111111111 001111 11110 11
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--CCCcEEEEeCCCCHHHHH
Q 000811 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAERQ 664 (1272)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~~Rq 664 (1272)
++.-..|+..|...|.... ..|.|||...-..+..+...+.. -|++..-++|.+++..|-
T Consensus 294 ----------------~v~l~~Ki~~L~sFI~shl--k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ 355 (758)
T KOG0343|consen 294 ----------------IVPLEDKIDMLWSFIKSHL--KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRI 355 (758)
T ss_pred ----------------EEehhhHHHHHHHHHHhcc--ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHH
Confidence 1122347777777777644 35899998888888887776654 399999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHH
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~ 744 (1272)
.+..+|.... -++|.+|..++.||+++++|.||-+|.|=+...|++|.||.-|.+......+| .--+-||.|+.
T Consensus 356 ev~~~F~~~~---~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~---L~psEeE~~l~ 429 (758)
T KOG0343|consen 356 EVYKKFVRKR---AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLM---LTPSEEEAMLK 429 (758)
T ss_pred HHHHHHHHhc---ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEE---EcchhHHHHHH
Confidence 9999997633 35899999999999999999999999999999999999999999887766543 33455788988
Q ss_pred HHHHHH
Q 000811 745 MTKKKM 750 (1272)
Q Consensus 745 ~~~~K~ 750 (1272)
++++|.
T Consensus 430 ~Lq~k~ 435 (758)
T KOG0343|consen 430 KLQKKK 435 (758)
T ss_pred HHHHcC
Confidence 888774
No 80
>PRK09401 reverse gyrase; Reviewed
Probab=99.65 E-value=2e-14 Score=189.35 Aligned_cols=293 Identities=16% Similarity=0.200 Sum_probs=184.4
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCC--C
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQ--M 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~--~ 359 (1272)
|..++|+|..++..+ ..|.++++..+||+|||..++..+..+.. ....+|||+|+ .++.|+...|..++.. +
T Consensus 78 G~~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 457899999887655 57889999999999999755444444332 33589999996 6668999999998754 3
Q ss_pred eEEEEEcChh----HHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEec
Q 000811 360 NVVMYVGTSQ----ARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1272)
Q Consensus 360 ~vv~~~G~~~----~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvD 435 (1272)
.+.+..|... .+..... ......++|+|+|++.+......+....+++||||
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~------------------------~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvD 208 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLE------------------------RLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVD 208 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHH------------------------HHhcCCCCEEEECHHHHHHHHHhccccccCEEEEE
Confidence 4444443321 1111110 00123689999999999877666666679999999
Q ss_pred cccccCCcc--------------hHHHHHHHhcc-------------------------cccEEEEeccCCCCCHHH-HH
Q 000811 436 EGHRLKNKD--------------SKLFSSLKQYS-------------------------TRHRVLLTGTPLQNNLDE-LF 475 (1272)
Q Consensus 436 EaHrlKn~~--------------S~~~~~l~~l~-------------------------~~~rllLTGTPlqN~~~E-L~ 475 (1272)
|||++-... ..+..++..++ ....++.|||.-...... ++
T Consensus 209 EaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~ 288 (1176)
T PRK09401 209 DVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLF 288 (1176)
T ss_pred ChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHh
Confidence 999975311 11222222221 123455566642111100 00
Q ss_pred HHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHH
Q 000811 476 MLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRN 555 (1272)
Q Consensus 476 ~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~ 555 (1272)
..++. +.+.
T Consensus 289 ---------------------------------~~ll~----------------------~~v~---------------- 297 (1176)
T PRK09401 289 ---------------------------------RELLG----------------------FEVG---------------- 297 (1176)
T ss_pred ---------------------------------hccce----------------------EEec----------------
Confidence 00000 0000
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchh
Q 000811 556 YQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQH 635 (1272)
Q Consensus 556 ~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~ 635 (1272)
.... .++.+ .|-|.. ...|...|..++..+ |..+|||++...
T Consensus 298 --------~~~~-------~~rnI-~~~yi~-------------------~~~k~~~L~~ll~~l---~~~~LIFv~t~~ 339 (1176)
T PRK09401 298 --------SPVF-------YLRNI-VDSYIV-------------------DEDSVEKLVELVKRL---GDGGLIFVPSDK 339 (1176)
T ss_pred --------Cccc-------ccCCc-eEEEEE-------------------cccHHHHHHHHHHhc---CCCEEEEEeccc
Confidence 0000 00000 011110 002444555565543 568999999877
Q ss_pred h---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEee----ccccccccCccC-CCEEEEecCCC-
Q 000811 636 M---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS----TRAGGLGINLAT-ADTVIIYDSDW- 706 (1272)
Q Consensus 636 ~---ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlS----Tragg~GINL~~-Ad~VIi~D~dW- 706 (1272)
. ++.|.++|...|+++..++|++ ...+++|.++... +|++ |.++++|||++. ...||+|+.|-
T Consensus 340 ~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G~~~---VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~ 411 (1176)
T PRK09401 340 GKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEGEVD---VLVGVASYYGVLVRGIDLPERIRYAIFYGVPKF 411 (1176)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCCCCC---EEEEecCCCCceeecCCCCcceeEEEEeCCCCE
Confidence 7 9999999999999999999999 2346999875544 6777 689999999998 89999999987
Q ss_pred -----ChhhHHHHHHhhhhc
Q 000811 707 -----NPHADLQAMARAHRL 721 (1272)
Q Consensus 707 -----Np~~~~Qa~gRahRi 721 (1272)
.......+++|...+
T Consensus 412 ~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 412 KFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred EEeccccccCHHHHHHHHhh
Confidence 566778888888754
No 81
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=1.5e-14 Score=165.33 Aligned_cols=322 Identities=16% Similarity=0.270 Sum_probs=212.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHH-HHHHHHHHhhCCC----CcEEEEecCccH----HHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERI----SPHLVVAPLSTL----RNWEREFATW 355 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiq-aia~l~~l~~~~~----~p~LIVvP~sll----~qW~~E~~~~ 355 (1272)
...|.|...+--. .-|+..+-+..+|+|||.. ++-+|..|+.... .++||+||+--| .+-.+.+.+|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3556776665321 2366777888999999976 4556666655432 389999997544 4566777888
Q ss_pred CCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc---cCCCcceeE
Q 000811 356 APQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS---LKPIKWQCM 432 (1272)
Q Consensus 356 ~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~---L~~~~w~~v 432 (1272)
+ ++.+....|.-+-+..-.. -...+||||.|+..+...... |.--...++
T Consensus 279 t-~I~~~L~vGGL~lk~QE~~--------------------------LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVL 331 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLKAQEAV--------------------------LRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVL 331 (691)
T ss_pred c-cceeeeeecCccHHHHHHH--------------------------HhhCCCEEEecchhHHHHhccCCCccccceeEE
Confidence 8 6888888888776543211 124789999999998765333 322345689
Q ss_pred EeccccccCCcc--hHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
|+|||.|+-... ..+...++... .+..+|.|||- ...+.+|.+|
T Consensus 332 vlDEADRMLeegFademnEii~lcpk~RQTmLFSATM-teeVkdL~sl-------------------------------- 378 (691)
T KOG0338|consen 332 VLDEADRMLEEGFADEMNEIIRLCPKNRQTMLFSATM-TEEVKDLASL-------------------------------- 378 (691)
T ss_pred EechHHHHHHHHHHHHHHHHHHhccccccceeehhhh-HHHHHHHHHh--------------------------------
Confidence 999999986433 23333333332 33458888883 1111111111
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
+| +....|+|.-+..- ...|..-+.++|-
T Consensus 379 -----------------SL--~kPvrifvd~~~~~---------------------a~~LtQEFiRIR~----------- 407 (691)
T KOG0338|consen 379 -----------------SL--NKPVRIFVDPNKDT---------------------APKLTQEFIRIRP----------- 407 (691)
T ss_pred -----------------hc--CCCeEEEeCCcccc---------------------chhhhHHHheecc-----------
Confidence 11 11122232211100 0000000001110
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
.. ..-+-.+|..++.++. ..+++||.+.......|.-.|...|+++.-++|+.++.+|-..+..
T Consensus 408 --~r------------e~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~k 471 (691)
T KOG0338|consen 408 --KR------------EGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEK 471 (691)
T ss_pred --cc------------ccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHH
Confidence 00 0112234455555554 5689999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC-ceEEEEEeeCCCHHHHHHHH
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLITRGSIEERMMQM 745 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k-~V~Vyrlit~~TvEE~I~~~ 745 (1272)
|.+..-+ |||+|.+++.||++..+-+||+|+.|-+...|+++.||.-|.|... .| -|+.++ |.+|+.-
T Consensus 472 Fk~~eid---vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsV---tlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 472 FKKEEID---VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSV---TLVGES--DRKLLKE 540 (691)
T ss_pred HHhccCC---EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceE---EEeccc--cHHHHHH
Confidence 9875544 8999999999999999999999999999999999999999998763 44 477776 5555543
No 82
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=2.2e-14 Score=158.19 Aligned_cols=317 Identities=18% Similarity=0.240 Sum_probs=209.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHH-HHHHHHHHhhCCCC-cEEEEecCccHH-HHHHHHHHHC--CCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQ-SIAFLASLFGERIS-PHLVVAPLSTLR-NWEREFATWA--PQM 359 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiq-aia~l~~l~~~~~~-p~LIVvP~sll~-qW~~E~~~~~--p~~ 359 (1272)
+..|-|...+--+ ..|++||=+.-+|+|||.. ++-.+..|.....+ -.||++|+.-+. |-...|.-.. -++
T Consensus 29 ~pTpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 29 KPTPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 5677888888666 6899999999999999976 45556666666556 569999986664 4444454333 357
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-hccCCC-----cceeEE
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-ASLKPI-----KWQCMI 433 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~-~~L~~~-----~w~~vI 433 (1272)
++.+++|..+-- .+. ..-..+.|||++|++.+.... +.+... +..++|
T Consensus 105 K~~vivGG~d~i---~qa-----------------------~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflV 158 (442)
T KOG0340|consen 105 KVSVIVGGTDMI---MQA-----------------------AILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLV 158 (442)
T ss_pred eEEEEEccHHHh---hhh-----------------------hhcccCCCeEecCccccccccccCCccchhhhhceeeEE
Confidence 788888876432 111 011247899999998874321 111112 335899
Q ss_pred eccccccCCcch--HHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000811 434 VDEGHRLKNKDS--KLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1272)
Q Consensus 434 vDEaHrlKn~~S--~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1272)
+|||.++-+..- .+......+.. +-.+++|||= .+++.+|+.
T Consensus 159 lDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql~~---------------------------------- 203 (442)
T KOG0340|consen 159 LDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQLFG---------------------------------- 203 (442)
T ss_pred ecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHhhc----------------------------------
Confidence 999999765321 11112222222 2456777762 112111110
Q ss_pred HhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000811 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1272)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e 590 (1272)
.|-.. +.+|..+...
T Consensus 204 -----------------~~i~k------------------------------------------------~~a~~~e~~~ 218 (442)
T KOG0340|consen 204 -----------------CPITK------------------------------------------------SIAFELEVID 218 (442)
T ss_pred -----------------CCccc------------------------------------------------ccceEEeccC
Confidence 00000 0001111000
Q ss_pred CCcccchHHH---HHHHhhhhHHHHHHHHHHHHHH-cCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q 000811 591 PDIEDTNESF---KQLLESSGKLQLLDKMMVKLKE-QGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIR 666 (1272)
Q Consensus 591 ~~~~~~~~~~---~~li~~S~Kl~~L~klL~~l~~-~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~ 666 (1272)
+. ...+.+ ..++...+|-..|..+|....+ ....++||.|.+....+|.-.|+..++....+++.+++.+|-.+
T Consensus 219 ~v--stvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~a 296 (442)
T KOG0340|consen 219 GV--STVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAA 296 (442)
T ss_pred CC--CchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHH
Confidence 00 000000 1123345677788888888877 56789999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCH
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~Tv 738 (1272)
+.+|.++ ...+|++|.+++.|+++++++.||.||.|-.|..|+++.||.-|.|..... .-+++...|
T Consensus 297 LsrFrs~---~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~a--iSivt~rDv 363 (442)
T KOG0340|consen 297 LSRFRSN---AARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMA--ISIVTQRDV 363 (442)
T ss_pred HHHHhhc---CccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcce--EEEechhhH
Confidence 9999764 445899999999999999999999999999999999999999998877532 234554433
No 83
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=7.3e-15 Score=175.27 Aligned_cols=398 Identities=17% Similarity=0.173 Sum_probs=203.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHC--CCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA--PQM 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~--p~~ 359 (1272)
..+|||||.++++-....+..+.+|=|.+.+|+|||.+++-+...+.. ..+|.+||. ++|.|=.+|...-. +-.
T Consensus 159 ~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~---~~iL~LvPSIsLLsQTlrew~~~~~l~~~ 235 (1518)
T COG4889 159 PKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA---ARILFLVPSISLLSQTLREWTAQKELDFR 235 (1518)
T ss_pred CCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh---hheEeecchHHHHHHHHHHHhhccCccce
Confidence 368999999999998888888999999999999999999988888765 478999995 78877555543221 222
Q ss_pred eEEEEEcChhHHH--HHHHhhhcCCCCchhh-hccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEe
Q 000811 360 NVVMYVGTSQARN--IIREYEFYFPKNPKKV-KKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIV 434 (1272)
Q Consensus 360 ~vv~~~G~~~~r~--~i~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIv 434 (1272)
.+.|...++.+|. .|.-+++-++...... ... .........+.-||++||+++.... ....--.|++||+
T Consensus 236 a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~-----~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~fDliic 310 (1518)
T COG4889 236 ASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILS-----EMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDEFDLIIC 310 (1518)
T ss_pred eEEEecCccccccccccccccCCCCCcccHHHHHH-----HHHHhhccCCcEEEEEcccchHHHHHHHHcCCCCccEEEe
Confidence 2334443333332 2333333333222100 000 0011122345569999999986543 3344457999999
Q ss_pred ccccccCCc------chHHHHH--HHhcccccEEEEeccCCC------CCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000811 435 DEGHRLKNK------DSKLFSS--LKQYSTRHRVLLTGTPLQ------NNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1272)
Q Consensus 435 DEaHrlKn~------~S~~~~~--l~~l~~~~rllLTGTPlq------N~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~ 500 (1272)
|||||--+. .|...+. -..+++..||.|||||-- .+..+--+.+ ..+.+...|.+.|..+.
T Consensus 311 DEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l-----~SMDDe~~fGeef~rl~ 385 (1518)
T COG4889 311 DEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAEL-----SSMDDELTFGEEFHRLG 385 (1518)
T ss_pred cchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhcccee-----eccchhhhhchhhhccc
Confidence 999996431 1111111 123456789999999921 0000000000 00112223333333222
Q ss_pred hHHHHHHHHHHhhhhhHHHHHhhHhhc-CCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHh-cCCchhhHHHHHHHHHH
Q 000811 501 QEEQISRLHRMLAPHLLRRVKKDVMKE-LPPKKELILRVELSSKQKEYYKAILTRNYQILTR-RGGAQISLINVVMELRK 578 (1272)
Q Consensus 501 ~~~~i~~L~~~L~p~~lRR~k~dv~~~-LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~-~~~~~~~l~~~l~~Lrk 578 (1272)
-.+ .|..+ |...+..++.|.--..+..+-..+. .....|+. ..+......|.++.--.
T Consensus 386 Fge-------------------Av~rdlLTDYKVmvlaVd~~~i~~~~~~~~~-~~~~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 386 FGE-------------------AVERDLLTDYKVMVLAVDKEVIAGVLQSVLS-GPSKGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred HHH-------------------HHHhhhhccceEEEEEechhhhhhhhhhhcc-Ccccccchhhhhhhhhhhhhhhhhcc
Confidence 221 22222 3455556665552222211111100 00000000 00000111122211000
Q ss_pred HhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHH----HHhCCCcEEEE
Q 000811 579 LCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDY----LTFKKWQYERI 654 (1272)
Q Consensus 579 ~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~----L~~~g~~~~ri 654 (1272)
-..|-.--.....+....-.+..-+..|.++.- +|..+++..... .....+++--+
T Consensus 446 -~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~-------------------sFe~Vve~Y~~Elk~d~~nL~iSi~Hv 505 (1518)
T COG4889 446 -EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAE-------------------SFETVVEAYDEELKKDFKNLKISIDHV 505 (1518)
T ss_pred -ccccccCCcCCchHHHHHHHHHHhhHHHHHHHH-------------------HHHHHHHHHHHHHHhcCCCceEEeecc
Confidence 000000000000000001111111222222211 111111111111 12234566779
Q ss_pred eCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC-ceEEEEEe
Q 000811 655 DGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN-KVMIFRLI 733 (1272)
Q Consensus 655 dG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k-~V~Vyrli 733 (1272)
||.|...+|......-|.-....-.+|-..|++++|+++++-|.||||||--+-...+|+.||+-|....| .-+|.--|
T Consensus 506 DGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIILPI 585 (1518)
T COG4889 506 DGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIILPI 585 (1518)
T ss_pred cccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhCcCCccceEEEEe
Confidence 99999999966655444423343457889999999999999999999999888888899999999976544 34444443
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.63 E-value=9.2e-14 Score=176.06 Aligned_cols=153 Identities=18% Similarity=0.213 Sum_probs=103.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
..|.++|.++++.+...+ .+...+|...||+|||...+..+......+ +.+||++|. .+..|+.+.|.+.+ +..+.
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-~~vLvLvPt~~L~~Q~~~~l~~~f-g~~v~ 219 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-KQALVLVPEIALTPQMLARFRARF-GAPVA 219 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHcC-CeEEEEeCcHHHHHHHHHHHHHHh-CCCEE
Confidence 479999999998885543 456789999999999999887776655543 479999996 67799999999887 46788
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCC
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn 442 (1272)
+++|..........+.- ......+|||+|+..+. ..+ -+..+|||||+|...-
T Consensus 220 ~~~s~~s~~~r~~~~~~----------------------~~~g~~~IVVgTrsal~---~p~--~~l~liVvDEeh~~s~ 272 (679)
T PRK05580 220 VLHSGLSDGERLDEWRK----------------------AKRGEAKVVIGARSALF---LPF--KNLGLIIVDEEHDSSY 272 (679)
T ss_pred EEECCCCHHHHHHHHHH----------------------HHcCCCCEEEeccHHhc---ccc--cCCCEEEEECCCcccc
Confidence 88887544332221100 01235689999987653 122 2467999999998632
Q ss_pred c--chHHH-----HHHH-hcccccEEEEeccC
Q 000811 443 K--DSKLF-----SSLK-QYSTRHRVLLTGTP 466 (1272)
Q Consensus 443 ~--~S~~~-----~~l~-~l~~~~rllLTGTP 466 (1272)
. ....+ ..++ .......+++||||
T Consensus 273 ~~~~~p~y~~r~va~~ra~~~~~~~il~SATp 304 (679)
T PRK05580 273 KQQEGPRYHARDLAVVRAKLENIPVVLGSATP 304 (679)
T ss_pred ccCcCCCCcHHHHHHHHhhccCCCEEEEcCCC
Confidence 2 11111 1111 22344678999999
No 85
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.63 E-value=2e-14 Score=184.12 Aligned_cols=329 Identities=19% Similarity=0.225 Sum_probs=221.4
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCCcEEEEecCc-cHHHHHHHHHHHC---C-C
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLS-TLRNWEREFATWA---P-Q 358 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E~~~~~---p-~ 358 (1272)
.|+.||.++++.+ .+|+++|+.-.||+|||... +.++..+........|+|-|.. +.......|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999888 78899999999999999996 5555666666666899999964 5566788888876 4 5
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh------hhccCCCcceeE
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD------SASLKPIKWQCM 432 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d------~~~L~~~~w~~v 432 (1272)
+++..|+|+........ + ...+.+|++|+|+|+-.. ......-.+.+|
T Consensus 146 v~~~~y~Gdt~~~~r~~---~-----------------------~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~l 199 (851)
T COG1205 146 VTFGRYTGDTPPEERRA---I-----------------------IRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYL 199 (851)
T ss_pred ceeeeecCCCChHHHHH---H-----------------------HhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEE
Confidence 67888888765432210 0 125789999999998541 111112237899
Q ss_pred EeccccccCCc-chHHHHHHHhcc--------cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHH
Q 000811 433 IVDEGHRLKNK-DSKLFSSLKQYS--------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEE 503 (1272)
Q Consensus 433 IvDEaHrlKn~-~S~~~~~l~~l~--------~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~ 503 (1272)
||||+|-+.+. .|.+.-.++.+. ....++.|||- ++..+|...+......
T Consensus 200 VvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--------------------~np~e~~~~l~~~~f~- 258 (851)
T COG1205 200 VVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--------------------ANPGEFAEELFGRDFE- 258 (851)
T ss_pred EEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--------------------cChHHHHHHhcCCcce-
Confidence 99999999874 344444444442 23568888883 2333333332111000
Q ss_pred HHHHHHHHhhhhhHHHHHhhHhhc-CCCceeEEE-eecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhC
Q 000811 504 QISRLHRMLAPHLLRRVKKDVMKE-LPPKKELIL-RVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCC 581 (1272)
Q Consensus 504 ~i~~L~~~L~p~~lRR~k~dv~~~-LP~k~e~~v-~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~ 581 (1272)
..+..+ -|....+.+ +-+........
T Consensus 259 ------------------~~v~~~g~~~~~~~~~~~~p~~~~~~~~---------------------------------- 286 (851)
T COG1205 259 ------------------VPVDEDGSPRGLRYFVRREPPIRELAES---------------------------------- 286 (851)
T ss_pred ------------------eeccCCCCCCCceEEEEeCCcchhhhhh----------------------------------
Confidence 001111 111111111 11100000000
Q ss_pred CcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHH----HHHHhCC----CcEEE
Q 000811 582 HPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLE----DYLTFKK----WQYER 653 (1272)
Q Consensus 582 hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~----~~L~~~g----~~~~r 653 (1272)
-.-.+...+..++..+...|-++|+|+.....+..+. ..+...+ ..+..
T Consensus 287 -----------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~ 343 (851)
T COG1205 287 -----------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVST 343 (851)
T ss_pred -----------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheee
Confidence 0123556667777888889999999999999998886 3333344 56888
Q ss_pred EeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC-ChhhHHHHHHhhhhcCCCCceEEEEE
Q 000811 654 IDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW-NPHADLQAMARAHRLGQTNKVMIFRL 732 (1272)
Q Consensus 654 idG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW-Np~~~~Qa~gRahRiGQ~k~V~Vyrl 732 (1272)
..|++...+|..+...|..++. .++++|.|+-.||++.+.|.||.+--+- .-..+.|+.||++|-||.- .++..
T Consensus 344 ~~~~~~~~er~~ie~~~~~g~~---~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~--l~~~v 418 (851)
T COG1205 344 YRAGLHREERRRIEAEFKEGEL---LGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQES--LVLVV 418 (851)
T ss_pred ccccCCHHHHHHHHHHHhcCCc---cEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCc--eEEEE
Confidence 8999999999999999977544 4899999999999999999999999988 7799999999999999543 33333
Q ss_pred eeCCCHHHHHHH
Q 000811 733 ITRGSIEERMMQ 744 (1272)
Q Consensus 733 it~~TvEE~I~~ 744 (1272)
.-.+-++..+..
T Consensus 419 ~~~~~~d~yy~~ 430 (851)
T COG1205 419 LRSDPLDSYYLR 430 (851)
T ss_pred eCCCccchhhhh
Confidence 336666666544
No 86
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.62 E-value=1.9e-15 Score=151.50 Aligned_cols=120 Identities=28% Similarity=0.457 Sum_probs=111.1
Q ss_pred hHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecccc
Q 000811 608 GKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1272)
Q Consensus 608 ~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTrag 687 (1272)
.|+..+..++.+..+.+.++|||+.....++.+.++|...+..+..++|+++..+|..+++.|+.+. ..+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE---IVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC---CcEEEEcChh
Confidence 6888888888887767899999999999999999999988999999999999999999999998755 4589999999
Q ss_pred ccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 688 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 688 g~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
|+|+|++.+++||+++++||+..++|++||++|.||+..|.+|
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998877664
No 87
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.62 E-value=1.1e-14 Score=169.74 Aligned_cols=310 Identities=18% Similarity=0.233 Sum_probs=207.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCC-cEEEEecCccH-HHHHHHHHHHCC---CC
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL-RNWEREFATWAP---QM 359 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~-p~LIVvP~sll-~qW~~E~~~~~p---~~ 359 (1272)
..+.|..++-.. ..+...|+-.-.|+|||+.. ++.+..|-..... -.|||+|+--+ .|-...|...+| ++
T Consensus 48 ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 48 PTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 345677776544 45667899999999999873 4444444333222 67999997555 677777777776 67
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeEEeccc
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~vIvDEa 437 (1272)
++.+|.|...-..... +..+.+|+|.|+..+... ...+.--..+++|+|||
T Consensus 124 ~csvfIGGT~~~~d~~---------------------------rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEA 176 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLI---------------------------RLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEA 176 (980)
T ss_pred ceEEEecCchhhhhhh---------------------------hhhhceEEecCchHHHHHHHhcCCCccceeEEEeccH
Confidence 8889988765432211 123567999999988653 34555567789999999
Q ss_pred cccCCcch---HHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 438 HRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 438 HrlKn~~S---~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
..|-...| .+...+..+. .+..+..|||=- .|+.+ .|.+.++
T Consensus 177 DkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp-~nLdn---------------------------------~Lsk~mr 222 (980)
T KOG4284|consen 177 DKLMDTESFQDDINIIINSLPQIRQVAAFSATYP-RNLDN---------------------------------LLSKFMR 222 (980)
T ss_pred HhhhchhhHHHHHHHHHHhcchhheeeEEeccCc-hhHHH---------------------------------HHHHHhc
Confidence 99865444 4455556665 456788999942 11211 2222332
Q ss_pred hhhHHHHHh-hHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCC
Q 000811 514 PHLLRRVKK-DVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPD 592 (1272)
Q Consensus 514 p~~lRR~k~-dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~ 592 (1272)
.-+|-|.-+ |+ .|-....+++.+.--+ |.+..
T Consensus 223 dp~lVr~n~~d~--~L~GikQyv~~~~s~n----------------------------nsvee----------------- 255 (980)
T KOG4284|consen 223 DPALVRFNADDV--QLFGIKQYVVAKCSPN----------------------------NSVEE----------------- 255 (980)
T ss_pred ccceeecccCCc--eeechhheeeeccCCc----------------------------chHHH-----------------
Confidence 222222221 11 1111111111100000 00000
Q ss_pred cccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q 000811 593 IEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNA 672 (1272)
Q Consensus 593 ~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~ 672 (1272)
.--|++.|-.++..+. -...||||....-.+-|.++|...|+.+..|.|.|++.+|..+++.+.+
T Consensus 256 -------------mrlklq~L~~vf~~ip--y~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~ 320 (980)
T KOG4284|consen 256 -------------MRLKLQKLTHVFKSIP--YVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRA 320 (980)
T ss_pred -------------HHHHHHHHHHHHhhCc--hHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhh
Confidence 0114444444444432 1257999999999999999999999999999999999999999999965
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k 725 (1272)
-...+|+||...++||+-..++.||.+|++-+-..|.+|||||+|.|...
T Consensus 321 ---f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G 370 (980)
T KOG4284|consen 321 ---FRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG 370 (980)
T ss_pred ---ceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc
Confidence 44568999999999999999999999999999999999999999999775
No 88
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=4.5e-14 Score=161.12 Aligned_cols=319 Identities=18% Similarity=0.275 Sum_probs=213.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHH-HHHhh-----CCCCcE-EEEecC-ccHHHHHHHHHHHC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFL-ASLFG-----ERISPH-LVVAPL-STLRNWEREFATWA 356 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l-~~l~~-----~~~~p~-LIVvP~-sll~qW~~E~~~~~ 356 (1272)
+..|.|-.+|--. ..+..+|=..-+|+|||...+.-+ .++.. .+.+|+ ||+||+ ++..|-..|.++|.
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 4556666665432 356677767789999996543322 22222 134576 677886 66688899999985
Q ss_pred --CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--ccCCCcceeE
Q 000811 357 --PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCM 432 (1272)
Q Consensus 357 --p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~L~~~~w~~v 432 (1272)
-+++++..+|....-..+... .....+||+|++.+..... ...-.+..++
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~L--------------------------k~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKEL--------------------------KEGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhh--------------------------hcCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 478888888776654444332 1456799999998754321 2222345789
Q ss_pred EeccccccCCcc--hHHHHHHHhcccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKNKD--SKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn~~--S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
|+|||.|+-... .+.......++.. ..|+.|+|- . ..+..|
T Consensus 375 V~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~---------~kIe~l- 418 (731)
T KOG0339|consen 375 VLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------K---------KKIEKL- 418 (731)
T ss_pred EEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------h---------HHHHHH-
Confidence 999999986433 3444444455544 467888883 0 111111
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
..+++. -|.......|.+.. .. +.+..-+|
T Consensus 419 -----------ard~L~--dpVrvVqg~vgean------------------------~d----ITQ~V~V~--------- 448 (731)
T KOG0339|consen 419 -----------ARDILS--DPVRVVQGEVGEAN------------------------ED----ITQTVSVC--------- 448 (731)
T ss_pred -----------HHHHhc--CCeeEEEeehhccc------------------------cc----hhheeeec---------
Confidence 111111 11111111111000 00 00000111
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
.....|+..|.+-|.+....| +||||..-....+-|...|..+++++..++|++.+.+|.+.|..
T Consensus 449 --------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~ 513 (731)
T KOG0339|consen 449 --------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSK 513 (731)
T ss_pred --------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHH
Confidence 112347777777777766655 89999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHH
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvE 739 (1272)
|...... +|+.|....+|+++....|||+||.--.-..+.|++||.+|-|-+ -..|-|||....+
T Consensus 514 fKkk~~~---VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--GvayTlvTeKDa~ 578 (731)
T KOG0339|consen 514 FKKKRKP---VLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVAYTLVTEKDAE 578 (731)
T ss_pred HhhcCCc---eEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--ceeeEEechhhHH
Confidence 9876655 899999999999999999999999998899999999999999987 5678899876544
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.61 E-value=4.8e-15 Score=157.50 Aligned_cols=165 Identities=26% Similarity=0.408 Sum_probs=110.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM 359 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~ 359 (1272)
.+|||||.+++.-+...+... .+++|..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 369999999998887777654 88999999999999999998888876 89999997 77799999998888655
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc-------------cCC
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS-------------LKP 426 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~-------------L~~ 426 (1272)
.............. ...... ...............+++++++..+...... +..
T Consensus 78 ~~~~~~~~~~~~~~----~~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 144 (184)
T PF04851_consen 78 YNFFEKSIKPAYDS----KEFISI---------QDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLK 144 (184)
T ss_dssp EEEEE--GGGCCE-----SEEETT---------TTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGG
T ss_pred hhhccccccccccc----cccccc---------ccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhcc
Confidence 44433211100000 000000 0000000111234678999999999765332 222
Q ss_pred CcceeEEeccccccCCcchHHHHHHHhcccccEEEEeccCC
Q 000811 427 IKWQCMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1272)
Q Consensus 427 ~~w~~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPl 467 (1272)
-.+++||+||||++.+... ++.+..+...++|+|||||-
T Consensus 145 ~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 145 NKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp GSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 3678999999999866553 55665578889999999994
No 90
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=1.5e-13 Score=172.00 Aligned_cols=120 Identities=17% Similarity=0.164 Sum_probs=107.3
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+.+.|..|||||.++...+.|..+|...|+++..++|.....+|+.+.+.|..+ .++|+|.
T Consensus 426 ~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G-----~VtIATN 500 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG-----AVTIATN 500 (896)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC-----cEEEecc
Confidence 45689999999999999999999999999999999999999999999999999999999999999764 2799999
Q ss_pred ccccccCccCC--------------------------------------CEEEEecCCCChhhHHHHHHhhhhcCCCCce
Q 000811 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 686 agg~GINL~~A--------------------------------------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
.+|.|+|+.=. =+||.-.-.=|-..|.|..||++|.|.....
T Consensus 501 mAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss 580 (896)
T PRK13104 501 MAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSS 580 (896)
T ss_pred CccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 99999997622 2788888899999999999999999988766
Q ss_pred EEE
Q 000811 728 MIF 730 (1272)
Q Consensus 728 ~Vy 730 (1272)
..|
T Consensus 581 ~f~ 583 (896)
T PRK13104 581 RFY 583 (896)
T ss_pred EEE
Confidence 544
No 91
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1.4e-13 Score=168.46 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=74.7
Q ss_pred HHHHHHHHHhC--CCcEEEEeCCCCHHHH--HHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC---C--
Q 000811 637 LDLLEDYLTFK--KWQYERIDGKVGGAER--QIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW---N-- 707 (1272)
Q Consensus 637 ldiL~~~L~~~--g~~~~ridG~~~~~~R--q~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW---N-- 707 (1272)
.+.+++.|... +.++.++|+.++...+ +.+++.|.++..+ +|++|+..+.|+|++.++.|+++|.|- .
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~---ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd 347 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKAD---ILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPD 347 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCC---EEEeCcccccCCCCCcccEEEEEcCcccccCcc
Confidence 56777777655 7899999999887655 8899999875444 899999999999999999998887763 2
Q ss_pred -------hhhHHHHHHhhhhcCCCCceEEEE
Q 000811 708 -------PHADLQAMARAHRLGQTNKVMIFR 731 (1272)
Q Consensus 708 -------p~~~~Qa~gRahRiGQ~k~V~Vyr 731 (1272)
.+.+.|+.||++|-+....|.|.-
T Consensus 348 ~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 348 FRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred cchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 367899999999988777776543
No 92
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.57 E-value=1.5e-13 Score=153.20 Aligned_cols=316 Identities=18% Similarity=0.280 Sum_probs=210.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH--HHHH-----hhCCCC-cEEEEecCccH-HHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF--LASL-----FGERIS-PHLVVAPLSTL-RNWEREFATW 355 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~--l~~l-----~~~~~~-p~LIVvP~sll-~qW~~E~~~~ 355 (1272)
+..|.|-++ |= ...+|..+|-...+|.|||+.-+.- +... +....+ ..||++|..-| .|-+-|..++
T Consensus 242 KPtPIqSQa--WP--I~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~ky 317 (629)
T KOG0336|consen 242 KPTPIQSQA--WP--ILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKY 317 (629)
T ss_pred CCCcchhcc--cc--eeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHh
Confidence 466677665 42 2268899999999999999764321 1111 112234 57899996554 5566666554
Q ss_pred C-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh--hhccCCCcceeE
Q 000811 356 A-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD--SASLKPIKWQCM 432 (1272)
Q Consensus 356 ~-p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d--~~~L~~~~w~~v 432 (1272)
- -.+..++++|.......+.+. ..+.+++|.|+..+... ...+.--..-+|
T Consensus 318 syng~ksvc~ygggnR~eqie~l--------------------------krgveiiiatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 318 SYNGLKSVCVYGGGNRNEQIEDL--------------------------KRGVEIIIATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred hhcCcceEEEecCCCchhHHHHH--------------------------hcCceEEeeCCchHhhhhhcCeeeeeeeEEE
Confidence 3 456777777766544444432 24678999999888653 223333345689
Q ss_pred EeccccccCC--cchHHHHHHHhcccccEEEEe-ccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHH
Q 000811 433 IVDEGHRLKN--KDSKLFSSLKQYSTRHRVLLT-GTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLH 509 (1272)
Q Consensus 433 IvDEaHrlKn--~~S~~~~~l~~l~~~~rllLT-GTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~ 509 (1272)
|+|||.++.. ..-++.+.|..++..+...|| ||- .
T Consensus 372 VlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW-P----------------------------------------- 409 (629)
T KOG0336|consen 372 VLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW-P----------------------------------------- 409 (629)
T ss_pred EecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-c-----------------------------------------
Confidence 9999999865 456888999999877665554 552 1
Q ss_pred HHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCC
Q 000811 510 RMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGV 589 (1272)
Q Consensus 510 ~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~ 589 (1272)
.-+||+....++ ...+++|.--. .++.|. +
T Consensus 410 -----~~VrrLa~sY~K-----ep~~v~vGsLd-----------------------------------L~a~~s-----V 439 (629)
T KOG0336|consen 410 -----EGVRRLAQSYLK-----EPMIVYVGSLD-----------------------------------LVAVKS-----V 439 (629)
T ss_pred -----hHHHHHHHHhhh-----CceEEEecccc-----------------------------------eeeeee-----e
Confidence 112222222211 12223222000 000000 0
Q ss_pred CCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q 000811 590 EPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDR 669 (1272)
Q Consensus 590 e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~ 669 (1272)
...+ .+-..+.|+..+..++..+ ....|||||+....+.|-|..-|...|+....++|.-.+.+|+.+++.
T Consensus 440 kQ~i--------~v~~d~~k~~~~~~f~~~m-s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 440 KQNI--------IVTTDSEKLEIVQFFVANM-SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALED 510 (629)
T ss_pred eeeE--------EecccHHHHHHHHHHHHhc-CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHh
Confidence 0000 0011244555555555443 356899999999999999999999999999999999999999999999
Q ss_pred HhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 670 FNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 670 Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
|. ++.+.+|++|..++.||+++...+|+.||.+-|-..|++++||.+|.|.+..- .-|++.+
T Consensus 511 ~k---sG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~s--is~lt~~ 572 (629)
T KOG0336|consen 511 FK---SGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTS--ISFLTRN 572 (629)
T ss_pred hh---cCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcce--EEEEehh
Confidence 95 56778999999999999999999999999999999999999999999977533 2355554
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=4.5e-13 Score=167.68 Aligned_cols=120 Identities=18% Similarity=0.178 Sum_probs=105.3
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.+.+.++...|.+|||||..+...+.|...|...|+++..++|. ..+|++.|..|.... ..++|+|.
T Consensus 412 ~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~---g~VtIATN 486 (830)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP---GAVTIATN 486 (830)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC---ceEEEecc
Confidence 3568999999999988999999999999999999999999999999999995 678999999996533 35899999
Q ss_pred ccccccCccCC--------------------------------------CEEEEecCCCChhhHHHHHHhhhhcCCCCce
Q 000811 686 AGGLGINLATA--------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 686 agg~GINL~~A--------------------------------------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
.+|+|+|+.-. =+||.-..+=|-..+.|..||++|.|.....
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 99999998643 2788888889999999999999999998766
Q ss_pred EEE
Q 000811 728 MIF 730 (1272)
Q Consensus 728 ~Vy 730 (1272)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 544
No 94
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.55 E-value=3.2e-13 Score=170.93 Aligned_cols=311 Identities=21% Similarity=0.220 Sum_probs=190.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHC-CCCeEE
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWA-PQMNVV 362 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~-p~~~vv 362 (1272)
+|+|.|.+++.-.. ..+.|++++..||+|||+.|...+..-..++.++++.|||+ ++..+=.++|.+|. -+++|.
T Consensus 31 el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEE
Confidence 79999999985332 33899999999999999999877777666666799999995 66677778888433 279999
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc--cCCCcceeEEecccccc
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRL 440 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~--L~~~~w~~vIvDEaHrl 440 (1272)
+++|+.+.... ...+++|+|||||.+-.-... .--...++|||||+|-+
T Consensus 108 ~~TgD~~~~~~-----------------------------~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l 158 (766)
T COG1204 108 ISTGDYDLDDE-----------------------------RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLL 158 (766)
T ss_pred EecCCcccchh-----------------------------hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeec
Confidence 99999764321 235789999999988432111 12225689999999999
Q ss_pred CCc-chH----HHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh
Q 000811 441 KNK-DSK----LFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1272)
Q Consensus 441 Kn~-~S~----~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1272)
... -.. +..-++.+.. -..++||||- .|..|+...|+ -..+.+ ..+|
T Consensus 159 ~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA~wL~---a~~~~~----------------------~~rp 211 (766)
T COG1204 159 GDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVADWLN---AKLVES----------------------DWRP 211 (766)
T ss_pred CCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHHHHhC---Cccccc----------------------CCCC
Confidence 765 111 1122222222 3668999994 33444333222 111100 0011
Q ss_pred hhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
.-++| ..|.. ....... +...
T Consensus 212 ~~l~~-------~v~~~-~~~~~~~-----------------------~~~k---------------------------- 232 (766)
T COG1204 212 VPLRR-------GVPYV-GAFLGAD-----------------------GKKK---------------------------- 232 (766)
T ss_pred ccccc-------CCccc-eEEEEec-----------------------Cccc----------------------------
Confidence 11100 00000 0000000 0000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----C-----------------------
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----K----------------------- 647 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~----~----------------------- 647 (1272)
.....+...+..++....+.|..||||+...+........|.. .
T Consensus 233 ---------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 303 (766)
T COG1204 233 ---------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPT 303 (766)
T ss_pred ---------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccc
Confidence 0011122233344445556788888888887654444444431 0
Q ss_pred ----------CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-----ec-----CCCC
Q 000811 648 ----------KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YD-----SDWN 707 (1272)
Q Consensus 648 ----------g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi-----~D-----~dWN 707 (1272)
...+..-+.+++.++|+-+-+.|.+ +.+.+|+||..++.|+||++ ++||| || -+-+
T Consensus 304 ~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~---g~ikVlv~TpTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~ 379 (766)
T COG1204 304 SEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK---GKIKVLVSTPTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIP 379 (766)
T ss_pred cchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc---CCceEEEechHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECc
Confidence 0123345567788899999999976 45568999999999999995 45555 45 2346
Q ss_pred hhhHHHHHHhhhhcCCCCc
Q 000811 708 PHADLQAMARAHRLGQTNK 726 (1272)
Q Consensus 708 p~~~~Qa~gRahRiGQ~k~ 726 (1272)
+...+|..|||+|.|=...
T Consensus 380 ~~dv~QM~GRAGRPg~d~~ 398 (766)
T COG1204 380 VLDVLQMAGRAGRPGYDDY 398 (766)
T ss_pred hhhHhhccCcCCCCCcCCC
Confidence 7889999999999985543
No 95
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.55 E-value=4.6e-13 Score=176.93 Aligned_cols=131 Identities=16% Similarity=0.169 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCC--e
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQM--N 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~--~ 360 (1272)
..+.|+|..++..+ ..|.+.++..+||+|||.-++.++..+... ...+|||+|+ .+..|+.+.|..++..+ .
T Consensus 77 ~~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~-g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 77 SEPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLAKK-GKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 45788999988765 578899999999999998666555554433 3489999996 55688999999887532 2
Q ss_pred E---EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccc
Q 000811 361 V---VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 361 v---v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEa 437 (1272)
+ .+|+|...........+. .....++|+|+|+..+......+.. .++++|||||
T Consensus 152 ~~~i~~~~Gg~~~~e~~~~~~~----------------------l~~~~~dIlV~Tp~rL~~~~~~l~~-~~~~iVvDEa 208 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKKEFMER----------------------IENGDFDILITTTMFLSKNYDELGP-KFDFIFVDDV 208 (1171)
T ss_pred eeeeeeecCCCCHHHHHHHHHH----------------------HhcCCCCEEEECHHHHHHHHHHhcC-CCCEEEEeCh
Confidence 2 346776433221111000 0113589999999999876665554 7999999999
Q ss_pred cccCC
Q 000811 438 HRLKN 442 (1272)
Q Consensus 438 HrlKn 442 (1272)
|++-.
T Consensus 209 D~~L~ 213 (1171)
T TIGR01054 209 DALLK 213 (1171)
T ss_pred Hhhhh
Confidence 99854
No 96
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=7.6e-13 Score=169.09 Aligned_cols=357 Identities=16% Similarity=0.141 Sum_probs=191.8
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCc-cHHHHHHHHHH----HC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLS-TLRNWEREFAT----WA 356 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~s-ll~qW~~E~~~----~~ 356 (1272)
+..++|+|....+-. ..++..||-..||.|||-.|+.++..+...+ ...++++.|.- +..+-...+.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~----~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 284 GYQPRQLQTLVDALP----LQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred CCCChHHHHHHHhhc----cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 568999999774322 3456689999999999999999888876643 45899999964 44555555543 34
Q ss_pred CCCeEEEEEcChhHHHHHHHhhhc-CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh-----ccC--CCc
Q 000811 357 PQMNVVMYVGTSQARNIIREYEFY-FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-----SLK--PIK 428 (1272)
Q Consensus 357 p~~~vv~~~G~~~~r~~i~~~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~-----~L~--~~~ 428 (1272)
+..++...||............-. .........................-.+|+|+|.+.+....- .++ .+.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La 439 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLG 439 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhc
Confidence 566788888876432111110000 000000000000000000011111235899999988764321 111 122
Q ss_pred ceeEEeccccccCCcchH-HHHHHHhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHH
Q 000811 429 WQCMIVDEGHRLKNKDSK-LFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQI 505 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~-~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i 505 (1272)
-.+|||||+|-+-...+. +...|+.+. ....++||||+-..-..+|...+..-.+ .
T Consensus 440 ~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~-~-------------------- 498 (878)
T PRK09694 440 RSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDP-V-------------------- 498 (878)
T ss_pred cCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccc-c--------------------
Confidence 348999999988443333 233333332 2458999999722111111111000000 0
Q ss_pred HHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccc
Q 000811 506 SRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM 585 (1272)
Q Consensus 506 ~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L 585 (1272)
......|-... +. .. .. . .+ .+..|+..
T Consensus 499 -----------------~~~~~YPlvt~----~~--~~------~~--~--------------------~~-~~~~~~~~ 526 (878)
T PRK09694 499 -----------------ELSSAYPLITW----RG--VN------GA--Q--------------------RF-DLSAHPEQ 526 (878)
T ss_pred -----------------ccccccccccc----cc--cc------cc--e--------------------ee-eccccccc
Confidence 00000000000 00 00 00 0 00 00000000
Q ss_pred ccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCC---CcEEEEeCCCCHHH
Q 000811 586 LEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAE 662 (1272)
Q Consensus 586 ~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~~ 662 (1272)
.... ....-.. ..+-.....-.++..++.. ...|.+||||++.+..+..+.+.|...+ +++..++|.++..+
T Consensus 527 ~~~~-~~v~v~~---~~~~~~~~~~~~l~~i~~~-~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~d 601 (878)
T PRK09694 527 LPAR-FTIQLEP---ICLADMLPDLTLLQRMIAA-ANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLND 601 (878)
T ss_pred cCcc-eEEEEEe---eccccccCHHHHHHHHHHH-HhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHH
Confidence 0000 0000000 0000000112233333333 3568899999999999999999998764 68999999999999
Q ss_pred H----HHHHHHHhccCC-CceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCC
Q 000811 663 R----QIRIDRFNAKNS-SRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQT 724 (1272)
Q Consensus 663 R----q~~I~~Fn~~~s-~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~ 724 (1272)
| +++++.|...+. ....+||+|.+...|||+ .+|++|....+ ...++|++||+||.|.+
T Consensus 602 R~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 602 RREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 8 467888943222 223589999999999999 57988886665 67899999999999874
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.54 E-value=3.1e-13 Score=168.46 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=101.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.+.+....+.|..|||||.++...+.|...|...|+++..++|.....+++.+...+ .++ .++|+|.
T Consensus 422 ~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag---~~g--~VtIATn 496 (796)
T PRK12906 422 LDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAG---QRG--AVTIATN 496 (796)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcC---CCc--eEEEEec
Confidence 35688899999988889999999999999999999999999999999999998755555444444 333 3799999
Q ss_pred ccccccCcc---CCC-----EEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 686 AGGLGINLA---TAD-----TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 686 agg~GINL~---~Ad-----~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
.+|+|+++. .+. +||.++.+-|...+.|+.||++|.|......
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~ 547 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSR 547 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceE
Confidence 999999995 566 9999999999999999999999999887664
No 98
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.54 E-value=5.9e-12 Score=138.76 Aligned_cols=314 Identities=18% Similarity=0.204 Sum_probs=211.0
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-CccHHHHHHHHHHHCCC
Q 000811 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1272)
Q Consensus 280 ~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~sll~qW~~E~~~~~p~ 358 (1272)
..++|+|.|+|..+.+-|...+.+....|+-.-+|.|||-+....+...++.+ +.+.|..| ..++..-...+..-+++
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G-~~vciASPRvDVclEl~~Rlk~aF~~ 170 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG-GRVCIASPRVDVCLELYPRLKQAFSN 170 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC-CeEEEecCcccchHHHHHHHHHhhcc
Confidence 34679999999999999999999999999999999999999888888777665 58899999 46666666777777788
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
..+..++|+..... ...=||-||++.++- +-.||++||||+.
T Consensus 171 ~~I~~Lyg~S~~~f--------------------------------r~plvVaTtHQLlrF------k~aFD~liIDEVD 212 (441)
T COG4098 171 CDIDLLYGDSDSYF--------------------------------RAPLVVATTHQLLRF------KQAFDLLIIDEVD 212 (441)
T ss_pred CCeeeEecCCchhc--------------------------------cccEEEEehHHHHHH------HhhccEEEEeccc
Confidence 89999998876421 012256666666542 2247999999999
Q ss_pred ccCC-cchHHHHHHHhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh-
Q 000811 439 RLKN-KDSKLFSSLKQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP- 514 (1272)
Q Consensus 439 rlKn-~~S~~~~~l~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p- 514 (1272)
-+-- .+-.+..+++.-. ...++.|||||-. +| .. +-++.-+.+
T Consensus 213 AFP~~~d~~L~~Av~~ark~~g~~IylTATp~k----~l------------------~r-----------~~~~g~~~~~ 259 (441)
T COG4098 213 AFPFSDDQSLQYAVKKARKKEGATIYLTATPTK----KL------------------ER-----------KILKGNLRIL 259 (441)
T ss_pred cccccCCHHHHHHHHHhhcccCceEEEecCChH----HH------------------HH-----------HhhhCCeeEe
Confidence 8732 3334555555543 3468999999921 00 00 000111110
Q ss_pred hhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
.+-+|... +.||-.....+ . .. .+.+
T Consensus 260 klp~RfH~---~pLpvPkf~w~--~--~~--------------------------~k~l--------------------- 285 (441)
T COG4098 260 KLPARFHG---KPLPVPKFVWI--G--NW--------------------------NKKL--------------------- 285 (441)
T ss_pred ecchhhcC---CCCCCCceEEe--c--cH--------------------------HHHh---------------------
Confidence 01122211 12221111111 1 00 0000
Q ss_pred cchHHHHHHHhhhhHHH-HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeC-CCCHHHHHHHHHHHhc
Q 000811 595 DTNESFKQLLESSGKLQ-LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDG-KVGGAERQIRIDRFNA 672 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~-~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG-~~~~~~Rq~~I~~Fn~ 672 (1272)
.-+|+. .|...|++-...|..||||...+.+++-+...|.. ++++..+.. +.....|.+.+..|.+
T Consensus 286 -----------~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~~~~~i~~Vhs~d~~R~EkV~~fR~ 353 (441)
T COG4098 286 -----------QRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KLPKETIASVHSEDQHRKEKVEAFRD 353 (441)
T ss_pred -----------hhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHh-hCCccceeeeeccCccHHHHHHHHHc
Confidence 011222 35667777788899999999999999999998853 444444332 2234678999999976
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCC--CChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD--WNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~d--WNp~~~~Qa~gRahRiGQ~k~V~Vyrlit 734 (1272)
+.+.+|++|..+.+|++++..|++|+=.-. ++-+..+|.-||++|--....-.|+.|-.
T Consensus 354 ---G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~ 414 (441)
T COG4098 354 ---GKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLFFHY 414 (441)
T ss_pred ---CceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEEEec
Confidence 455699999999999999999999886555 89999999999999976554444444443
No 99
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.54 E-value=1.8e-14 Score=156.31 Aligned_cols=302 Identities=19% Similarity=0.248 Sum_probs=198.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCC-cEEEEecCccH----HHHHHHHHHHCCCC
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERIS-PHLVVAPLSTL----RNWEREFATWAPQM 359 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~-p~LIVvP~sll----~qW~~E~~~~~p~~ 359 (1272)
..|.|.+++--. ..|++.+.-.--|+|||-.. |-.+..+-..... -.+|+||.--+ +|-..++.+.. ++
T Consensus 108 PSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i 182 (459)
T KOG0326|consen 108 PSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GI 182 (459)
T ss_pred CCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-Ce
Confidence 344555544321 23444444456799999763 3333333222222 67999996433 67788888887 58
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEeccc
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvDEa 437 (1272)
.+.+-+|....|..|... ....|++|.|+..+..-. ..-.--...++|+|||
T Consensus 183 ~vmvttGGT~lrDDI~Rl--------------------------~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEA 236 (459)
T KOG0326|consen 183 KVMVTTGGTSLRDDIMRL--------------------------NQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEA 236 (459)
T ss_pred EEEEecCCcccccceeee--------------------------cCceEEEEcCChhHHHHHhcccccchhceEEEechh
Confidence 888888887766543221 146789999998875432 1111224568999999
Q ss_pred cccCCcc--hHHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh
Q 000811 438 HRLKNKD--SKLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1272)
Q Consensus 438 HrlKn~~--S~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1272)
..+-+.. ..+.+.+.-+. .+..+|.|||-- . ....|...
T Consensus 237 DKlLs~~F~~~~e~li~~lP~~rQillySATFP-~------------------tVk~Fm~~------------------- 278 (459)
T KOG0326|consen 237 DKLLSVDFQPIVEKLISFLPKERQILLYSATFP-L------------------TVKGFMDR------------------- 278 (459)
T ss_pred hhhhchhhhhHHHHHHHhCCccceeeEEecccc-h------------------hHHHHHHH-------------------
Confidence 9886643 23334444443 445567777720 0 11122211
Q ss_pred hhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
.+++-. ++.+.-+|+..-.
T Consensus 279 ----~l~kPy--------~INLM~eLtl~Gv------------------------------------------------- 297 (459)
T KOG0326|consen 279 ----HLKKPY--------EINLMEELTLKGV------------------------------------------------- 297 (459)
T ss_pred ----hccCcc--------eeehhhhhhhcch-------------------------------------------------
Confidence 111100 1111111111000
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccC
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKN 674 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~ 674 (1272)
..+-..+..+.|+..|..++.+|.= ...||||+.+.-+++|+..+...||++..++..|.++.|..+..+|.++.
T Consensus 298 ---tQyYafV~e~qKvhCLntLfskLqI--NQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~ 372 (459)
T KOG0326|consen 298 ---TQYYAFVEERQKVHCLNTLFSKLQI--NQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGK 372 (459)
T ss_pred ---hhheeeechhhhhhhHHHHHHHhcc--cceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccc
Confidence 0112234456677778888877643 47899999999999999999999999999999999999999999997744
Q ss_pred CCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC
Q 000811 675 SSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 675 s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k 725 (1272)
- .-|++|...-.||+++++++||.||-+-|+..|++++||.+|.|--.
T Consensus 373 c---rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 373 C---RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred c---ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 3 37999999999999999999999999999999999999999999653
No 100
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=99.53 E-value=1.8e-16 Score=154.06 Aligned_cols=100 Identities=25% Similarity=0.346 Sum_probs=79.8
Q ss_pred CCCccCCCCCCcchhHHHHHHHHHHHHHHHHHHhccCCCCCCCccccccccccCCCCCCCcCHHHHHHHHHHHHhhcc--
Q 000811 1024 SPTFSDGVPKEGLRIQDVLVRIAVLLLIRDKVKFLSQKPGTPLFTDDIYLRYPGLRGGKFWKEEHDSLLLRAVLKHGY-- 1101 (1272)
Q Consensus 1024 ~~~~~d~i~k~~~k~~~vl~ri~~~~ll~~Kv~~~~~~p~~~~~~~~~~~~~~~~~~~~~w~~eeD~~LL~~i~~~Gy-- 1101 (1272)
|++++..|++|+.|++.. ...+.+|++||+.|. +| + .+|.++||++++++.||+++||||||++|+|||
T Consensus 1 ~ek~i~~IE~gE~k~~k~---~~~~~~l~~Kv~~~~-~P---~--~~L~i~y~~~~~~k~yseeEDRfLl~~~~~~G~~~ 71 (118)
T PF09111_consen 1 WEKIIKRIEKGEKKIEKR---KEQQEALRKKVEQYK-NP---W--QELKINYPPNNKKKVYSEEEDRFLLCMLYKYGYDA 71 (118)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHCC-S-SH---H--HH---SSTSTSS-SSS-HHHHHHHHHHHHHHTTTS
T ss_pred ChHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHcc-CC---H--HHCeeccCCCCCCCCcCcHHHHHHHHHHHHhCCCC
Confidence 356677888888877664 456799999999997 66 5 678999998889999999999999999999999
Q ss_pred -CchHHhhcCc--------ccChhHHHHHHhcCCCCCCCC
Q 000811 1102 -GRWQAIVDDK--------DLKVQEVICQELNLPFINLPV 1132 (1272)
Q Consensus 1102 -g~we~Ik~D~--------~l~l~~~i~~e~~~~~~~~~~ 1132 (1272)
|.|+.|+++. ||+|+++..+|+++||.+|+.
T Consensus 72 ~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 72 EGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 9999999884 999999999999999998764
No 101
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.53 E-value=1e-12 Score=168.02 Aligned_cols=109 Identities=17% Similarity=0.185 Sum_probs=91.9
Q ss_pred cCceEEEEecchhhHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~V 699 (1272)
.+.++|||.......+.+...|.. .++.+..++|+++.++|..+++.|.. +...+||||..+..||+++.+++|
T Consensus 208 ~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~---G~rkVlVATnIAErgItIp~V~~V 284 (819)
T TIGR01970 208 ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQ---GRRKVVLATNIAETSLTIEGIRVV 284 (819)
T ss_pred cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhccc---CCeEEEEecchHhhcccccCceEE
Confidence 356899999999999999999876 47899999999999999999999854 344589999999999999999999
Q ss_pred EEecCC----CChhh--------------HHHHHHhhhhcCCCCceEEEEEeeCCC
Q 000811 700 IIYDSD----WNPHA--------------DLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 700 Ii~D~d----WNp~~--------------~~Qa~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
|.++.. +||.. ..||.||++|. ++-.+|+|+++..
T Consensus 285 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~ 337 (819)
T TIGR01970 285 IDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQ 337 (819)
T ss_pred EEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHH
Confidence 998864 56654 67888888886 5777899998753
No 102
>PRK14701 reverse gyrase; Provisional
Probab=99.53 E-value=8.8e-13 Score=177.50 Aligned_cols=336 Identities=15% Similarity=0.222 Sum_probs=186.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCC----C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAP----Q 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p----~ 358 (1272)
.++++.|..++..+ ..+++.++..+||+|||+..+..+..+. ......|||+|+ +++.|....|..++. +
T Consensus 78 ~~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~al~~~-~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFIALFLA-LKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHHHHHHH-hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 45889999998766 5688999999999999984333322222 222379999996 566888889988763 3
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
.++..++|...........+- .....++|+|+|++.+......+....++++||||||
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~----------------------l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD 210 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLER----------------------IENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVD 210 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHH----------------------HhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECce
Confidence 566778877544322111100 0123688999999988654443333678999999999
Q ss_pred ccCCcchHHHHHHHhcccccEEEEeccCCCCCHHHHHH-HHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhhH
Q 000811 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFM-LMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLL 517 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~-Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~l 517 (1272)
++-...-.+-+.|. |-|- ..|+.. .+..+......+. ....+.+..|...+.
T Consensus 211 ~ml~~~knid~~L~---------llGF-----~~e~~~~~~~il~~~~~~~~---------~~~~~~~~~l~~~~~---- 263 (1638)
T PRK14701 211 AFLKASKNIDRSLQ---------LLGF-----YEEIIEKAWKIIYLKKQGNI---------EDAMEKREILNKEIE---- 263 (1638)
T ss_pred eccccccccchhhh---------cCCC-----hHHHHHHHHHhhhccccccc---------chhhhhhhhhhhhhh----
Confidence 98431110000110 0000 011110 0111100000000 000112222322221
Q ss_pred HHHHhhHhhcCCCceeEEE--eecCCHHHHHHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 518 RRVKKDVMKELPPKKELIL--RVELSSKQKEYYKAILTRNYQILTRR-GGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 518 RR~k~dv~~~LP~k~e~~v--~v~ls~~Q~~~Y~~il~~~~~~l~~~-~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
.+|......+ ...+++.. ....++.. .+.-. +..... ++.+ .|.|+..
T Consensus 264 ---------~~~~~~~~ll~~SAT~~~r~--~~~~l~~~---~l~f~v~~~~~~-------lr~i-~~~yi~~------- 314 (1638)
T PRK14701 264 ---------KIGNKIGCLIVASATGKAKG--DRVKLYRE---LLGFEVGSGRSA-------LRNI-VDVYLNP------- 314 (1638)
T ss_pred ---------hcCCCccEEEEEecCCCchh--HHHHHhhc---CeEEEecCCCCC-------CCCc-EEEEEEC-------
Confidence 1222222222 22333211 11111111 00000 000000 0000 1111110
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhh---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHM---LDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~---ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn 671 (1272)
....| ..|..++..+ |..+|||++.... ++.|..+|...|+++..++|. |..++++|.
T Consensus 315 ----------~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~ 375 (1638)
T PRK14701 315 ----------EKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFDLFE 375 (1638)
T ss_pred ----------CHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHHHHH
Confidence 01112 2344555443 6789999997664 589999999999999999984 899999998
Q ss_pred ccCCCceEEEeecc----ccccccCccC-CCEEEEecCCC---ChhhHHH-------------HHHhhhhcCCC
Q 000811 672 AKNSSRFCFLLSTR----AGGLGINLAT-ADTVIIYDSDW---NPHADLQ-------------AMARAHRLGQT 724 (1272)
Q Consensus 672 ~~~s~~~vfLlSTr----agg~GINL~~-Ad~VIi~D~dW---Np~~~~Q-------------a~gRahRiGQ~ 724 (1272)
++... +|++|. .+++|||++. ...||+||.|- |...+.| ..||++|-|..
T Consensus 376 ~G~~~---VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 376 EGEID---YLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred cCCCC---EEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 75554 788884 7889999998 99999999987 5554444 45999998854
No 103
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.52 E-value=2e-13 Score=151.38 Aligned_cols=324 Identities=18% Similarity=0.266 Sum_probs=196.8
Q ss_pred CcccccccCCCCCCCC------CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh-CCCC-cEEEE
Q 000811 268 PKEFQQYEHSPEFLSG------GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERIS-PHLVV 339 (1272)
Q Consensus 268 ~~~~~~~~~~P~~~~g------~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~-~~~~-p~LIV 339 (1272)
.+.|..+.-.|+.+.| ......|..++-.| +.....+.|--...|+|||......+..-.. .... -.+.+
T Consensus 89 ~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPll--l~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCL 166 (477)
T KOG0332|consen 89 AKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLL--LAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICL 166 (477)
T ss_pred cccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchh--hcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceee
Confidence 4567777777877765 23455677776554 2345677888889999999653222222111 1112 35666
Q ss_pred ecCc-cHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHH
Q 000811 340 APLS-TLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMIN 418 (1272)
Q Consensus 340 vP~s-ll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~ 418 (1272)
+|.- +..|-..-+.+...-..+..-++-+..+. . +.....-+|+|-|..++.
T Consensus 167 aPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~-------------------~--------rG~~i~eqIviGTPGtv~ 219 (477)
T KOG0332|consen 167 APTRELAPQTGEVVEEMGKFTELTASYAIRGSKA-------------------K--------RGNKLTEQIVIGTPGTVL 219 (477)
T ss_pred CchHHHHHHHHHHHHHhcCceeeeEEEEecCccc-------------------c--------cCCcchhheeeCCCccHH
Confidence 9964 44554444444432222222111111100 0 011234579999999887
Q ss_pred hhhhccCCC---cceeEEeccccccCCcch---HHHHHHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHH
Q 000811 419 LDSASLKPI---KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEE 491 (1272)
Q Consensus 419 ~d~~~L~~~---~w~~vIvDEaHrlKn~~S---~~~~~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~ 491 (1272)
.-...|+.+ ...++|+|||..+-+... ......+.+. ....++.|||-. + ....
T Consensus 220 Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~----e---------------~V~~ 280 (477)
T KOG0332|consen 220 DLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFV----E---------------KVAA 280 (477)
T ss_pred HHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhH----H---------------HHHH
Confidence 655444333 457899999998766542 2223333333 456678888830 0 0001
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHH
Q 000811 492 FQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLIN 571 (1272)
Q Consensus 492 F~~~f~~~~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~ 571 (1272)
|...+. .--.+.+|||- ++ .|++..+..+-
T Consensus 281 Fa~kiv------------pn~n~i~Lk~e--el--~L~~IkQlyv~---------------------------------- 310 (477)
T KOG0332|consen 281 FALKIV------------PNANVIILKRE--EL--ALDNIKQLYVL---------------------------------- 310 (477)
T ss_pred HHHHhc------------CCCceeeeehh--hc--cccchhhheee----------------------------------
Confidence 100000 00001111110 00 12222222221
Q ss_pred HHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcE
Q 000811 572 VVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQY 651 (1272)
Q Consensus 572 ~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~ 651 (1272)
|.| ...|+.+|..+. .+..-| ..||||+...+...|...|...|+.+
T Consensus 311 --------C~~-----------------------~~~K~~~l~~ly-g~~tig-qsiIFc~tk~ta~~l~~~m~~~Gh~V 357 (477)
T KOG0332|consen 311 --------CAC-----------------------RDDKYQALVNLY-GLLTIG-QSIIFCHTKATAMWLYEEMRAEGHQV 357 (477)
T ss_pred --------ccc-----------------------hhhHHHHHHHHH-hhhhhh-heEEEEeehhhHHHHHHHHHhcCcee
Confidence 211 123566665532 233333 67999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------ChhhHHHHHHhhhhcCCCC
Q 000811 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 652 ~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW------Np~~~~Qa~gRahRiGQ~k 725 (1272)
..++|.+...+|..+|++|..+.+. +|++|.++++||+.+.++.||.||.+- .|..|++|+||++|.|.+.
T Consensus 358 ~~l~G~l~~~~R~~ii~~Fr~g~~k---VLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG 434 (477)
T KOG0332|consen 358 SLLHGDLTVEQRAAIIDRFREGKEK---VLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG 434 (477)
T ss_pred EEeeccchhHHHHHHHHHHhcCcce---EEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc
Confidence 9999999999999999999875554 899999999999999999999999864 5789999999999999764
No 104
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=1.6e-12 Score=162.30 Aligned_cols=120 Identities=19% Similarity=0.204 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+.+.|..|||||..+...+.|..+|...|+++..+++.....+|..+...|+.+. ++|+|.
T Consensus 431 ~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~-----VtIATn 505 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA-----VTIATN 505 (908)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc-----EEEecC
Confidence 467888999989999999999999999999999999999999999999999999999999988886532 799999
Q ss_pred ccccccCccCC-------------------------------------CEEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 686 AGGLGINLATA-------------------------------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 686 agg~GINL~~A-------------------------------------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
.+|.|+|+.-. =+||.-.-.=|-..|.|..||++|.|......
T Consensus 506 mAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~ 585 (908)
T PRK13107 506 MAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSR 585 (908)
T ss_pred CcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCcee
Confidence 99999998622 27898899999999999999999999886554
Q ss_pred EE
Q 000811 729 IF 730 (1272)
Q Consensus 729 Vy 730 (1272)
.|
T Consensus 586 f~ 587 (908)
T PRK13107 586 FY 587 (908)
T ss_pred EE
Confidence 43
No 105
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.50 E-value=5.3e-13 Score=154.12 Aligned_cols=340 Identities=18% Similarity=0.263 Sum_probs=207.9
Q ss_pred CceEEEeCCCChHHHH-HHHHHHHHhhC-------------CCC-cEEEEecC-ccHHHHHHHHHHHC--CCCeEEEEEc
Q 000811 305 THVILADEMGLGKTIQ-SIAFLASLFGE-------------RIS-PHLVVAPL-STLRNWEREFATWA--PQMNVVMYVG 366 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiq-aia~l~~l~~~-------------~~~-p~LIVvP~-sll~qW~~E~~~~~--p~~~vv~~~G 366 (1272)
...+=|.|+|+|||+. +|-++..+.+. ++. -.|||+|+ .+..|-...|...+ +++.+..++|
T Consensus 220 ~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~G 299 (731)
T KOG0347|consen 220 VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITG 299 (731)
T ss_pred hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeec
Confidence 5677799999999987 46666644321 122 26999997 45577777776655 5788888898
Q ss_pred ChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhhccCCC-cceeEEecccccc-
Q 000811 367 TSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPI-KWQCMIVDEGHRL- 440 (1272)
Q Consensus 367 ~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~----d~~~L~~~-~w~~vIvDEaHrl- 440 (1272)
.-.....-+-. ....+|||.|+..+-. +...|..+ +..|+|||||.|+
T Consensus 300 GLavqKQqRlL--------------------------~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmv 353 (731)
T KOG0347|consen 300 GLAVQKQQRLL--------------------------NQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMV 353 (731)
T ss_pred hhHHHHHHHHH--------------------------hcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHh
Confidence 86554332211 1367899999887632 22234443 4579999999998
Q ss_pred -CCcchHHHHHHHhcc------cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhh
Q 000811 441 -KNKDSKLFSSLKQYS------TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLA 513 (1272)
Q Consensus 441 -Kn~~S~~~~~l~~l~------~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~ 513 (1272)
+++-..+.+.|..+. .+..+..|||-- +..+.... ...-........-..+..+++
T Consensus 354 ekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt---------~~~~~~~~--------~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 354 EKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT---------LVLQQPLS--------SSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hhccHHHHHHHHHHhhhhhcccccceEEEEEEee---------hhhcChhH--------HhhhccchhhhhhHHHHHHHH
Confidence 444455666665554 123588888841 10000000 000000000011111222221
Q ss_pred hhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCc
Q 000811 514 PHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDI 593 (1272)
Q Consensus 514 p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~ 593 (1272)
..-+ .-+| ..+++++.+.-. ..+.+-+--| .| + +.+.
T Consensus 417 ~ig~---------~~kp-----kiiD~t~q~~ta-----------------------~~l~Es~I~C-~~-~----eKD~ 453 (731)
T KOG0347|consen 417 KIGF---------RGKP-----KIIDLTPQSATA-----------------------STLTESLIEC-PP-L----EKDL 453 (731)
T ss_pred HhCc---------cCCC-----eeEecCcchhHH-----------------------HHHHHHhhcC-Cc-c----ccce
Confidence 1111 1112 234444433221 1122222223 11 0 0000
Q ss_pred ccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcc
Q 000811 594 EDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAK 673 (1272)
Q Consensus 594 ~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~ 673 (1272)
.- .=+| -.---|.||||+.++.+..|.-+|...+++...++.+|.+.+|-+.+++|.+.
T Consensus 454 yl------------------yYfl---~ryPGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~ 512 (731)
T KOG0347|consen 454 YL------------------YYFL---TRYPGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQS 512 (731)
T ss_pred eE------------------EEEE---eecCCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcC
Confidence 00 0000 00123899999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC-----------------
Q 000811 674 NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG----------------- 736 (1272)
Q Consensus 674 ~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~----------------- 736 (1272)
.++ +||+|.++++||+++.++|||+|..+-....|++|-||.-|.+... |.| .|+...
T Consensus 513 ~~~---VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~G-vsv-ml~~P~e~~~~~KL~ktL~k~~d 587 (731)
T KOG0347|consen 513 PSG---VLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEG-VSV-MLCGPQEVGPLKKLCKTLKKKED 587 (731)
T ss_pred CCe---EEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCC-eEE-EEeChHHhHHHHHHHHHHhhccC
Confidence 665 8999999999999999999999999999999999999999987543 222 222221
Q ss_pred ----CHHHHHHHHHHHHHHHHHHH
Q 000811 737 ----SIEERMMQMTKKKMVLEHLV 756 (1272)
Q Consensus 737 ----TvEE~I~~~~~~K~~L~~~v 756 (1272)
-|++.|+...+.+-.|++.+
T Consensus 588 lpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347|consen 588 LPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred CCceeccHHHHHHHHHHHHHHHHH
Confidence 34666666666666665554
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.49 E-value=6e-12 Score=159.32 Aligned_cols=323 Identities=16% Similarity=0.213 Sum_probs=215.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCC--ceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHH-HHHHHHHHHCCCCe
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMN 360 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~--~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~-qW~~E~~~~~p~~~ 360 (1272)
.+-.|-|+.+++-+..=+.+++ .-+||-++|.|||=.|+=.+-.-...+ +-+.|+||+.+|. |-.+.|..-+-++.
T Consensus 593 yeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G-KQVAvLVPTTlLA~QHy~tFkeRF~~fP 671 (1139)
T COG1197 593 YEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG-KQVAVLVPTTLLAQQHYETFKERFAGFP 671 (1139)
T ss_pred CcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC-CeEEEEcccHHhHHHHHHHHHHHhcCCC
Confidence 5678899999998876666654 469999999999988754333222232 5899999998884 44555654444555
Q ss_pred EEEE-----EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEec
Q 000811 361 VVMY-----VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1272)
Q Consensus 361 vv~~-----~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvD 435 (1272)
|-+- .+.+..+..+... ..++.||||-|+..+.++..+- +-.+||||
T Consensus 672 V~I~~LSRF~s~kE~~~il~~l-------------------------a~G~vDIvIGTHrLL~kdv~Fk---dLGLlIID 723 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGL-------------------------AEGKVDIVIGTHRLLSKDVKFK---DLGLLIID 723 (1139)
T ss_pred eeEEEecccCCHHHHHHHHHHH-------------------------hcCCccEEEechHhhCCCcEEe---cCCeEEEe
Confidence 5442 2333333333321 2368899999999998765443 34699999
Q ss_pred cccccCCcchHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh
Q 000811 436 EGHRLKNKDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1272)
Q Consensus 436 EaHrlKn~~S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1272)
|=||+.= +.-..|+.+++ -+.|-|||||++-.+.= .++ .+
T Consensus 724 EEqRFGV---k~KEkLK~Lr~~VDvLTLSATPIPRTL~M-----sm~----------------------Gi--------- 764 (1139)
T COG1197 724 EEQRFGV---KHKEKLKELRANVDVLTLSATPIPRTLNM-----SLS----------------------GI--------- 764 (1139)
T ss_pred chhhcCc---cHHHHHHHHhccCcEEEeeCCCCcchHHH-----HHh----------------------cc---------
Confidence 9999853 33456677765 48999999998766421 000 00
Q ss_pred hhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcc
Q 000811 515 HLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIE 594 (1272)
Q Consensus 515 ~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~ 594 (1272)
++-..-.-||.....|.--..+..-.+.+
T Consensus 765 ------RdlSvI~TPP~~R~pV~T~V~~~d~~~ir--------------------------------------------- 793 (1139)
T COG1197 765 ------RDLSVIATPPEDRLPVKTFVSEYDDLLIR--------------------------------------------- 793 (1139)
T ss_pred ------hhhhhccCCCCCCcceEEEEecCChHHHH---------------------------------------------
Confidence 00001134665555444332221111111
Q ss_pred cchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhc
Q 000811 595 DTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK--KWQYERIDGKVGGAERQIRIDRFNA 672 (1272)
Q Consensus 595 ~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~--g~~~~ridG~~~~~~Rq~~I~~Fn~ 672 (1272)
..+++++ .+|-.|....+.+..+.-+...|+.. ..++...+|.|+..+-+.++..|.+
T Consensus 794 -------------------eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~ 853 (1139)
T COG1197 794 -------------------EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYN 853 (1139)
T ss_pred -------------------HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHc
Confidence 1123333 34667777777888888888888653 5678999999999999999999987
Q ss_pred cCCCceEEEeeccccccccCccCCCEEEEecCC-CChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHHHHH
Q 000811 673 KNSSRFCFLLSTRAGGLGINLATADTVIIYDSD-WNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKKKMV 751 (1272)
Q Consensus 673 ~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~d-WNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~K~~ 751 (1272)
+..+ +||||..-..|||+++|||+||-+.| +--++.-|-.||++|- ++..+-|.++-.+ ..|-+.+.+++.
T Consensus 854 g~~d---VLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS--~~~AYAYfl~p~~---k~lT~~A~kRL~ 925 (1139)
T COG1197 854 GEYD---VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS--NKQAYAYFLYPPQ---KALTEDAEKRLE 925 (1139)
T ss_pred CCCC---EEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc--cceEEEEEeecCc---cccCHHHHHHHH
Confidence 5555 89999999999999999999999987 6888999999999995 3456677666543 223444455444
Q ss_pred HH
Q 000811 752 LE 753 (1272)
Q Consensus 752 L~ 753 (1272)
..
T Consensus 926 aI 927 (1139)
T COG1197 926 AI 927 (1139)
T ss_pred HH
Confidence 33
No 107
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.49 E-value=1.4e-12 Score=151.27 Aligned_cols=315 Identities=19% Similarity=0.254 Sum_probs=208.0
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCCcEEEEecCccHHHH-HHHHHHHCC--CC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLRNW-EREFATWAP--QM 359 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~p~LIVvP~sll~qW-~~E~~~~~p--~~ 359 (1272)
.+|.|-|.-+|.. .+..|.+-++...|++|||+.+ +|-+..++..+ +++|.+||+-.|.|. .++|..-+. .+
T Consensus 215 ~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g-~KmlfLvPLVALANQKy~dF~~rYs~Lgl 290 (830)
T COG1202 215 EELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSGG-KKMLFLVPLVALANQKYEDFKERYSKLGL 290 (830)
T ss_pred ceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhCC-CeEEEEehhHHhhcchHHHHHHHhhcccc
Confidence 4699999998842 2368899999999999999986 66666666543 599999998777554 456654432 24
Q ss_pred eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---hhccCCCcceeEEecc
Q 000811 360 NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---SASLKPIKWQCMIVDE 436 (1272)
Q Consensus 360 ~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d---~~~L~~~~w~~vIvDE 436 (1272)
.+.+-.|...-+. .+ .. .......+.||+|-||+-+--- ...+. +...|||||
T Consensus 291 kvairVG~srIk~----~~----------------~p--v~~~t~~dADIIVGTYEGiD~lLRtg~~lg--diGtVVIDE 346 (830)
T COG1202 291 KVAIRVGMSRIKT----RE----------------EP--VVVDTSPDADIIVGTYEGIDYLLRTGKDLG--DIGTVVIDE 346 (830)
T ss_pred eEEEEechhhhcc----cC----------------Cc--cccCCCCCCcEEEeechhHHHHHHcCCccc--ccceEEeee
Confidence 4445556543221 00 00 0112346789999999987322 22333 456899999
Q ss_pred ccccCCc--chHHHHHH---Hhc-ccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHH
Q 000811 437 GHRLKNK--DSKLFSSL---KQY-STRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHR 510 (1272)
Q Consensus 437 aHrlKn~--~S~~~~~l---~~l-~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~ 510 (1272)
.|.+... ...+--.+ +.+ .....+.||||- .|+.||..-|..-..
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~lV--------------------------- 397 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAKLV--------------------------- 397 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCeeE---------------------------
Confidence 9999762 23333333 333 235679999995 555555543321000
Q ss_pred HhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000811 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1272)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e 590 (1272)
.| ..---|...+.+++.=.
T Consensus 398 ---~y---------~~RPVplErHlvf~~~e------------------------------------------------- 416 (830)
T COG1202 398 ---LY---------DERPVPLERHLVFARNE------------------------------------------------- 416 (830)
T ss_pred ---ee---------cCCCCChhHeeeeecCc-------------------------------------------------
Confidence 00 00011233344433211
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHH----HcC--ceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q 000811 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLK----EQG--HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQ 664 (1272)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~----~~g--~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq 664 (1272)
+.|..++.++.+.-. ..| -.+|||+...+-...|.++|..+|++..-++++.+..+|+
T Consensus 417 ----------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk 480 (830)
T COG1202 417 ----------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERK 480 (830)
T ss_pred ----------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHH
Confidence 112222222222111 123 2699999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEE----ecCCC-ChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII----YDSDW-NPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi----~D~dW-Np~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
.+-..|.+.. ...+++|.|+|-|+|+++. .||| +..+| +|+.+.|..|||+|.|=...-.||-++-.|
T Consensus 481 ~vE~~F~~q~---l~~VVTTAAL~AGVDFPAS-QVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 481 SVERAFAAQE---LAAVVTTAALAAGVDFPAS-QVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHhcCC---cceEeehhhhhcCCCCchH-HHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999997644 4478999999999999965 4444 44456 999999999999999988888888888655
No 108
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.46 E-value=3.7e-12 Score=163.29 Aligned_cols=110 Identities=17% Similarity=0.175 Sum_probs=91.4
Q ss_pred cCceEEEEecchhhHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTF---KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~---~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~V 699 (1272)
.+..+|||......++.+.+.|.. .++.+..++|+++..+|+.++..|.+ +...+|++|..+..||++..+++|
T Consensus 211 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~---G~rkVlvATnIAErsLtIp~V~~V 287 (812)
T PRK11664 211 ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPA---GRRKVVLATNIAETSLTIEGIRLV 287 (812)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccC---CCeEEEEecchHHhcccccCceEE
Confidence 357899999999999999999986 57889999999999999999988853 445689999999999999999999
Q ss_pred EEecCC----CChh--------------hHHHHHHhhhhcCCCCceEEEEEeeCCCH
Q 000811 700 IIYDSD----WNPH--------------ADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1272)
Q Consensus 700 Ii~D~d----WNp~--------------~~~Qa~gRahRiGQ~k~V~Vyrlit~~Tv 738 (1272)
|.++.. |+|. ...||.||++|. .+-.+|+|+++...
T Consensus 288 ID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~ 341 (812)
T PRK11664 288 VDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA 341 (812)
T ss_pred EECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH
Confidence 996654 3333 467877777776 57889999987644
No 109
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.46 E-value=9.6e-14 Score=126.85 Aligned_cols=78 Identities=35% Similarity=0.570 Sum_probs=73.8
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhc
Q 000811 642 DYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRL 721 (1272)
Q Consensus 642 ~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRi 721 (1272)
.+|+..|+++..++|.++..+|+.+++.|+.+.. .+|++|.++++|||++.+++||+++++||+..+.|++||++|.
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~ 77 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI---RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRI 77 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS---SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc---eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCC
Confidence 3688999999999999999999999999998665 4899999999999999999999999999999999999999998
Q ss_pred C
Q 000811 722 G 722 (1272)
Q Consensus 722 G 722 (1272)
|
T Consensus 78 g 78 (78)
T PF00271_consen 78 G 78 (78)
T ss_dssp T
T ss_pred C
Confidence 7
No 110
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.44 E-value=6.8e-14 Score=138.39 Aligned_cols=79 Identities=35% Similarity=0.634 Sum_probs=69.9
Q ss_pred CCCcCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHHHHhcCCCCCCCCCCCCCCCCCCCCCCCchhhhhcCCCCCC
Q 000811 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVPGASSQAPNGANSANPEALQMQGNSTGN 1160 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1160 (1272)
..+|+..||+|||.||..||||+|+.|.+||++.| +|.||.+....
T Consensus 3 ~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~I-------iNEPFk~e~~k--------------------------- 48 (173)
T PF08074_consen 3 YEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAI-------INEPFKTESQK--------------------------- 48 (173)
T ss_pred hhhhhhhhhHHHHhHHhhccchhHHHHhcCCceee-------ecccccccccc---------------------------
Confidence 36899999999999999999999999999999999 88898764432
Q ss_pred CCcccCccCCcchhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcC
Q 000811 1161 DSAAAGVQGTTDAANQAQVYQDSSVLYHFRDMQRRQVEFIKKRVLLLEKGLNAEYQKEYFGD 1222 (1272)
Q Consensus 1161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1222 (1272)
.+|.+|++| |+.+||+|||+||.+|.|.++-.-
T Consensus 49 --------------------------gnfle~KNk---FLaRRfKLLEQaLvIEEqLrRAa~ 81 (173)
T PF08074_consen 49 --------------------------GNFLEMKNK---FLARRFKLLEQALVIEEQLRRAAY 81 (173)
T ss_pred --------------------------cchHHHHHH---HHHHHHHHHHHHHhhhccccchhh
Confidence 138899999 999999999999999999987443
No 111
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.43 E-value=1.8e-12 Score=138.35 Aligned_cols=156 Identities=28% Similarity=0.352 Sum_probs=111.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCC-CceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEec-CccHHHHHHHHHHHCCCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQ-THVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAP-LSTLRNWEREFATWAPQM 359 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~-~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP-~sll~qW~~E~~~~~p~~ 359 (1272)
..+++++|.+++..+ ... .++++..++|+|||..++.++....... ..++||++| .++..+|..++..+.+..
T Consensus 6 ~~~~~~~Q~~~~~~~----~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEAL----LSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHH----HcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 367999999999887 344 8999999999999998777777665543 469999999 567799999999988652
Q ss_pred ---eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc--cCCCcceeEEe
Q 000811 360 ---NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIV 434 (1272)
Q Consensus 360 ---~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~--L~~~~w~~vIv 434 (1272)
....+.+... ...+... .....+++++|++.+...... +....++++|+
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~-------------------------~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIi 135 (201)
T smart00487 82 GLKVVGLYGGDSK-REQLRKL-------------------------ESGKTDILVTTPGRLLDLLENDLLELSNVDLVIL 135 (201)
T ss_pred CeEEEEEeCCcch-HHHHHHH-------------------------hcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEE
Confidence 3334444332 2222111 012238999999998776554 44557889999
Q ss_pred ccccccCC-cc-hHHHHHHHhc-ccccEEEEeccCCC
Q 000811 435 DEGHRLKN-KD-SKLFSSLKQY-STRHRVLLTGTPLQ 468 (1272)
Q Consensus 435 DEaHrlKn-~~-S~~~~~l~~l-~~~~rllLTGTPlq 468 (1272)
||+|.+.+ .. ......+..+ ...+++++||||..
T Consensus 136 DE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 136 DEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred ECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 99999985 33 3333444444 46788999999963
No 112
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.42 E-value=4.1e-12 Score=157.99 Aligned_cols=123 Identities=20% Similarity=0.252 Sum_probs=108.2
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTra 686 (1272)
+.|+.-|..+|....+ .-++|||++...-+|.|.+-|...||.+..++|.++..+|...|..|.+.. +.+|++|..
T Consensus 597 ~eKf~kL~eLl~e~~e-~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~---~~LLvaTsv 672 (997)
T KOG0334|consen 597 NEKFLKLLELLGERYE-DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV---VNLLVATSV 672 (997)
T ss_pred hHHHHHHHHHHHHHhh-cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC---ceEEEehhh
Confidence 4577788888887766 559999999999999999999999999999999999999999999997644 459999999
Q ss_pred cccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 687 GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 687 gg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
.+.||++.....||+||.+-....+..|.||++|.|.+. .-|.|++.
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999888888899999999988777 45566666
No 113
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.42 E-value=2.8e-12 Score=144.99 Aligned_cols=120 Identities=17% Similarity=0.205 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc-
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR- 685 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr- 685 (1272)
--|+.++..|++--.=.| |.|||.+.++..-.|.-+|+.-|++.|.+.|.++..-|.-+|++||.+- +-++|+|.
T Consensus 252 ~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~---YdivIAtD~ 327 (569)
T KOG0346|consen 252 EDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGL---YDIVIATDD 327 (569)
T ss_pred chhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcc---eeEEEEccC
Confidence 447777777766433333 8999999999999999999999999999999999999999999998743 34677777
Q ss_pred -------------------------c---------cccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 686 -------------------------A---------GGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 686 -------------------------a---------gg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
+ .++|||++.+++||.||.+-++..|++|+||..|-|.+..+.-|
T Consensus 328 s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSf 406 (569)
T KOG0346|consen 328 SADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSF 406 (569)
T ss_pred ccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEE
Confidence 1 25799999999999999999999999999999998877666543
No 114
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.42 E-value=3.2e-12 Score=150.18 Aligned_cols=122 Identities=23% Similarity=0.329 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHH-HhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL-TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L-~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
-+|+..+..++.... .-.+|||.|...-...|-..| ...++.+..|+|..+..+|...+++|.. +.+-+|++|.
T Consensus 372 ~~K~lA~rq~v~~g~--~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~---g~IwvLicTd 446 (593)
T KOG0344|consen 372 KGKLLALRQLVASGF--KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI---GKIWVLICTD 446 (593)
T ss_pred hhHHHHHHHHHhccC--CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc---cCeeEEEehh
Confidence 456777776666542 348999999999988888888 7889999999999999999999999976 4455899999
Q ss_pred ccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeC
Q 000811 686 AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITR 735 (1272)
Q Consensus 686 agg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~ 735 (1272)
..+.||++..++.||+||.+-.-..++.++||.+|-|+.... |-|++.
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~A--itfytd 494 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKA--ITFYTD 494 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcce--EEEecc
Confidence 999999999999999999999999999999999999988543 334444
No 115
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=1.8e-11 Score=153.47 Aligned_cols=118 Identities=16% Similarity=0.198 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..|.+.+..+...|.+|||||+++...+.|..+|...|+++..|++ ...+|++.|..|.... ..++|+|.
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~---g~VtIATN 654 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK---GAVTIATN 654 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC---CeEEEecc
Confidence 356999999999999999999999999999999999999999999999997 5789999999996433 35899999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhhHHHHHHhhhhcCCCCceE
Q 000811 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 686 agg~GINL~~Ad--------~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
.+|+|+++.-.+ +||.++.+-+...+.|++||++|.|..-...
T Consensus 655 MAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ 705 (1025)
T PRK12900 655 MAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESV 705 (1025)
T ss_pred CcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceE
Confidence 999999998443 4488888999999999999999999886653
No 116
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.41 E-value=3.6e-12 Score=162.41 Aligned_cols=315 Identities=15% Similarity=0.148 Sum_probs=216.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
...||-|.++|+-+ ..|+.+++-..||.||++.-- |=.++ -.+-+|||.|+ |++......+.. .++...
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ--lPA~l--~~gitvVISPL~SLm~DQv~~L~~--~~I~a~ 332 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ--LPALL--LGGVTVVISPLISLMQDQVTHLSK--KGIPAC 332 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee--ccccc--cCCceEEeccHHHHHHHHHHhhhh--cCccee
Confidence 46999999999744 689999999999999997541 00011 12378999995 777655555522 367777
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhcc------CC-CcceeEEec
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL------KP-IKWQCMIVD 435 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L------~~-~~w~~vIvD 435 (1272)
.+.+..........+.... ......+++..|+|.+......+ .. -.-.++|||
T Consensus 333 ~L~s~q~~~~~~~i~q~l~--------------------~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vID 392 (941)
T KOG0351|consen 333 FLSSIQTAAERLAILQKLA--------------------NGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVID 392 (941)
T ss_pred eccccccHHHHHHHHHHHh--------------------CCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEec
Confidence 7777766654333322111 11246789999999987643322 11 125789999
Q ss_pred cccccCCcc-------hHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 436 EGHRLKNKD-------SKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 436 EaHrlKn~~-------S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
|||.+.... .++......+...-.|.||||--..--.++...|+.-.|..|.+.
T Consensus 393 EAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s------------------- 453 (941)
T KOG0351|consen 393 EAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS------------------- 453 (941)
T ss_pred HHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc-------------------
Confidence 999886533 233333333444467899999755555566666665555433211
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
..++.-.+-|....+ ...+..++...+.
T Consensus 454 ------------------fnR~NL~yeV~~k~~------------------------~~~~~~~~~~~~~---------- 481 (941)
T KOG0351|consen 454 ------------------FNRPNLKYEVSPKTD------------------------KDALLDILEESKL---------- 481 (941)
T ss_pred ------------------CCCCCceEEEEeccC------------------------ccchHHHHHHhhh----------
Confidence 122222333322221 0111122222211
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
...+...||||....+.+.+..+|...|++...++.+++..+|+.+-.
T Consensus 482 --------------------------------~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~ 529 (941)
T KOG0351|consen 482 --------------------------------RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQK 529 (941)
T ss_pred --------------------------------cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHH
Confidence 223567899999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEee
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLIT 734 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit 734 (1272)
.|..+. +.++++|=|.|.|||-+++-.||+|..+-+-.-+-|..|||+|-|+...+..|+=..
T Consensus 530 ~w~~~~---~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 530 AWMSDK---IRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred HHhcCC---CeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcceeEEecchh
Confidence 998744 568999999999999999999999999999999999999999999998776655443
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.41 E-value=9.9e-11 Score=147.03 Aligned_cols=125 Identities=19% Similarity=0.203 Sum_probs=107.7
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTra 686 (1272)
.+++..|.+-|....+.|.+||||+.....++.|.++|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 425 ~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~---G~i~VLV~t~~ 501 (655)
T TIGR00631 425 DGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRL---GEFDVLVGINL 501 (655)
T ss_pred cchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhc---CCceEEEEcCh
Confidence 567777878888878889999999999999999999999999999999999999999999999965 44568999999
Q ss_pred cccccCccCCCEEEEecC-----CCChhhHHHHHHhhhhcCCCCceEEEEEeeCCC
Q 000811 687 GGLGINLATADTVIIYDS-----DWNPHADLQAMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 687 gg~GINL~~Ad~VIi~D~-----dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
+++|++++.+++||++|. +-+...++|++||++|.. . -.++.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~-~--G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV-N--GKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC-C--CEEEEEEcCCC
Confidence 999999999999999994 557889999999999973 2 33555555443
No 118
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.38 E-value=3.6e-12 Score=127.95 Aligned_cols=136 Identities=25% Similarity=0.295 Sum_probs=99.7
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEecCccHH-HHHHHHHHHCC-CCeEEEEEcChhHHHHHHHhhhcC
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWEREFATWAP-QMNVVMYVGTSQARNIIREYEFYF 381 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP~sll~-qW~~E~~~~~p-~~~vv~~~G~~~~r~~i~~~e~~~ 381 (1272)
+++++..++|+|||.+++.++..+... ..+++||++|...+. +|...+..+.. ...+.++++..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 368999999999999999999988765 446999999987665 55667777775 4667777766544332211
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhhhhcc--CCCcceeEEeccccccCCcchHHH---HHHHhccc
Q 000811 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASL--KPIKWQCMIVDEGHRLKNKDSKLF---SSLKQYST 456 (1272)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L--~~~~w~~vIvDEaHrlKn~~S~~~---~~l~~l~~ 456 (1272)
.....+++++||+.+....... ....|++|||||+|.+.+...... ........
T Consensus 76 ---------------------~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~ 134 (144)
T cd00046 76 ---------------------LSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKD 134 (144)
T ss_pred ---------------------hcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCcc
Confidence 1246789999999887654432 345789999999999988765543 33444567
Q ss_pred ccEEEEeccC
Q 000811 457 RHRVLLTGTP 466 (1272)
Q Consensus 457 ~~rllLTGTP 466 (1272)
..++++||||
T Consensus 135 ~~~i~~saTp 144 (144)
T cd00046 135 RQVLLLSATP 144 (144)
T ss_pred ceEEEEeccC
Confidence 7899999998
No 119
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.35 E-value=4.3e-11 Score=147.56 Aligned_cols=307 Identities=18% Similarity=0.248 Sum_probs=178.8
Q ss_pred HhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC---------CCCcEEEEecCccH-----HHHHHHHHHHCCCCeEEEE
Q 000811 299 FSWSKQTHVILADEMGLGKTIQSIAFLASLFGE---------RISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 299 ~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~---------~~~p~LIVvP~sll-----~qW~~E~~~~~p~~~vv~~ 364 (1272)
-.|+.+.|+|++.+||+|||..|...+..+.++ +.-+++.|+|...| .+|..-|.-| ++.|..+
T Consensus 121 ~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~EL 198 (1230)
T KOG0952|consen 121 VAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVREL 198 (1230)
T ss_pred hhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEe
Confidence 346789999999999999999987776666553 11289999995443 4566555554 6889999
Q ss_pred EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh-------hhhccCCCcceeEEeccc
Q 000811 365 VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL-------DSASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 365 ~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~-------d~~~L~~~~w~~vIvDEa 437 (1272)
+|+...-+. ...+.+|+|||+|..-- +...+. ...+|||||.
T Consensus 199 TGD~ql~~t-----------------------------ei~~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEV 247 (1230)
T KOG0952|consen 199 TGDTQLTKT-----------------------------EIADTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEV 247 (1230)
T ss_pred cCcchhhHH-----------------------------HHHhcCEEEecccceeeeeeeeccchhhhh--heeeEEeeee
Confidence 998653211 12467899999987511 111122 3468999999
Q ss_pred cccCCcch-----HHHHHHHhcc----cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 438 HRLKNKDS-----KLFSSLKQYS----TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 438 HrlKn~~S-----~~~~~l~~l~----~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
|-|...-. ...+.++... .-+.++||||- -|++|+ -.||..+.....-.|...|...
T Consensus 248 HlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATl--PN~eDv---A~fL~vn~~~glfsFd~~yRPv--------- 313 (1230)
T KOG0952|consen 248 HLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATL--PNYEDV---ARFLRVNPYAGLFSFDQRYRPV--------- 313 (1230)
T ss_pred hhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccC--CCHHHH---HHHhcCCCccceeeeccccccc---------
Confidence 99976543 3334443332 33678999993 244443 3455544444433444333210
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCC--HHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccc
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELS--SKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYML 586 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls--~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~ 586 (1272)
|.....+-+.-. ..|.+..
T Consensus 314 ---------------------pL~~~~iG~k~~~~~~~~~~~-------------------------------------- 334 (1230)
T KOG0952|consen 314 ---------------------PLTQGFIGIKGKKNRQQKKNI-------------------------------------- 334 (1230)
T ss_pred ---------------------ceeeeEEeeecccchhhhhhH--------------------------------------
Confidence 001111111100 0000000
Q ss_pred cCCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH----hCCCc------------
Q 000811 587 EGVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQ------------ 650 (1272)
Q Consensus 587 ~~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~----~~g~~------------ 650 (1272)
..+++. +.+ ++..+||.|+||+......--.+..|. ..|..
T Consensus 335 -------------------d~~~~~---kv~-e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l 391 (1230)
T KOG0952|consen 335 -------------------DEVCYD---KVV-EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQL 391 (1230)
T ss_pred -------------------HHHHHH---HHH-HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHH
Confidence 001111 112 233568888888887553333333332 22221
Q ss_pred -------EEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhh----------HHH
Q 000811 651 -------YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHA----------DLQ 713 (1272)
Q Consensus 651 -------~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~----------~~Q 713 (1272)
...-+.++.-.+|+..-+.|..+.- -+|++|...+.|+||++--++|-=-.-|++.. .+|
T Consensus 392 ~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i---~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQ 468 (1230)
T KOG0952|consen 392 KELFQQGMGIHHAGMLRSDRQLVEKEFKEGHI---KVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQ 468 (1230)
T ss_pred HHHHHhhhhhcccccchhhHHHHHHHHhcCCc---eEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHH
Confidence 2233455667788888888876443 48999999999999997655554344455544 689
Q ss_pred HHHhhhhcCCCCceEEEEEeeCCC
Q 000811 714 AMARAHRLGQTNKVMIFRLITRGS 737 (1272)
Q Consensus 714 a~gRahRiGQ~k~V~Vyrlit~~T 737 (1272)
.+|||+|..=.+.-..+-+.+.++
T Consensus 469 ifGRAGRPqFd~~G~giIiTt~dk 492 (1230)
T KOG0952|consen 469 IFGRAGRPQFDSSGEGIIITTRDK 492 (1230)
T ss_pred HHhccCCCCCCCCceEEEEecccH
Confidence 999999987655544444444443
No 120
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.34 E-value=7.9e-10 Score=139.94 Aligned_cols=124 Identities=21% Similarity=0.243 Sum_probs=107.6
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTra 686 (1272)
.+++..|...|......|.+||||+.....++.|.++|...|+++..++|.++..+|..++..|.. +.+.+|++|..
T Consensus 429 ~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~---g~i~vlV~t~~ 505 (652)
T PRK05298 429 KGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINL 505 (652)
T ss_pred cccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHc---CCceEEEEeCH
Confidence 457777888888888889999999999999999999999999999999999999999999999965 34568999999
Q ss_pred cccccCccCCCEEEEecCC-----CChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 687 GGLGINLATADTVIIYDSD-----WNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 687 gg~GINL~~Ad~VIi~D~d-----WNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
++.|++++.+++||++|.+ -++..++|++||++|- . .-.++.|++..
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 9999999999999999974 5889999999999994 3 33455666643
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.32 E-value=4e-10 Score=141.31 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=98.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..++.... ..-..+|.. ++..+ .+.|+|.
T Consensus 550 ~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~-~~Ea~iia~--AG~~g--~VTIATN 624 (970)
T PRK12899 550 EREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNH-AQEAEIIAG--AGKLG--AVTVATN 624 (970)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchh-hhHHHHHHh--cCCCC--cEEEeec
Confidence 457899999999999999999999999999999999999999999999988643 222344443 33334 4799999
Q ss_pred ccccccCccCC--------CEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 686 AGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 686 agg~GINL~~A--------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
.+|+|.++.-. =+||.-..+=|...+.|..||++|.|.......|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887533 3788889999999999999999999988765543
No 122
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.32 E-value=4.5e-12 Score=115.94 Aligned_cols=81 Identities=31% Similarity=0.507 Sum_probs=75.5
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhh
Q 000811 639 LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARA 718 (1272)
Q Consensus 639 iL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRa 718 (1272)
.|.++|...++.+..++|.++..+|..+++.|+.+.. .+|++|.++++|+|++.+++||+++++||+..+.|++||+
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~---~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI---KVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC---eEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4677888889999999999999999999999987554 5899999999999999999999999999999999999999
Q ss_pred hhcC
Q 000811 719 HRLG 722 (1272)
Q Consensus 719 hRiG 722 (1272)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9987
No 123
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=99.32 E-value=2.4e-11 Score=138.21 Aligned_cols=216 Identities=25% Similarity=0.299 Sum_probs=132.9
Q ss_pred eeEEEeecCCHHHHHHHHHHHHHHHHHHHh---cCC------------chhhHHHHHHHHHHHhCCcccc-cCCCCCccc
Q 000811 532 KELILRVELSSKQKEYYKAILTRNYQILTR---RGG------------AQISLINVVMELRKLCCHPYML-EGVEPDIED 595 (1272)
Q Consensus 532 ~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~---~~~------------~~~~l~~~l~~Lrk~c~hP~L~-~~~e~~~~~ 595 (1272)
.++.++++|+..|+++|+.++.-.+..+.+ ... ....+...+.+|+.+|+||+|+ +..-+....
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 468899999999999999999876655432 111 1133455677899999999986 232333333
Q ss_pred chHHHHHHHhhhhHHHHHHHHHHHH-----HHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH---
Q 000811 596 TNESFKQLLESSGKLQLLDKMMVKL-----KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI--- 667 (1272)
Q Consensus 596 ~~~~~~~li~~S~Kl~~L~klL~~l-----~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I--- 667 (1272)
..+....+...|||+.+|..++..+ ...+.+++|.++..+++|+|+.+|..+++.|.|++|.....+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 4445578889999999999999999 66688999999999999999999999999999999986544433222
Q ss_pred ---------HHHhccCC-CceEEEeecccccc----ccCccCCCEEEEecCCCChhhHHHHHHhh-hhcCCCCceEEEEE
Q 000811 668 ---------DRFNAKNS-SRFCFLLSTRAGGL----GINLATADTVIIYDSDWNPHADLQAMARA-HRLGQTNKVMIFRL 732 (1272)
Q Consensus 668 ---------~~Fn~~~s-~~~vfLlSTragg~----GINL~~Ad~VIi~D~dWNp~~~~Qa~gRa-hRiGQ~k~V~Vyrl 732 (1272)
.......+ ...++|++|.-... .++-...|.||-||+.+++....-..-|. +|-+ +.+-|++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~--~~~PiirL 241 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN--RLCPIIRL 241 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH---------S--EEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC--CCCcEEEE
Confidence 11112222 33445655554433 23345679999999999998865444444 4433 88999999
Q ss_pred eeCCCHHHHHHHHHHHH
Q 000811 733 ITRGSIEERMMQMTKKK 749 (1272)
Q Consensus 733 it~~TvEE~I~~~~~~K 749 (1272)
|..+|+|.-++..-...
T Consensus 242 v~~nSiEHi~L~~~~~~ 258 (297)
T PF11496_consen 242 VPSNSIEHIELCFPKSS 258 (297)
T ss_dssp EETTSHHHHHHHHTTTS
T ss_pred eeCCCHHHHHHHccCcc
Confidence 99999999887766544
No 124
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=2.8e-10 Score=139.49 Aligned_cols=120 Identities=21% Similarity=0.192 Sum_probs=98.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+.++.+.|..|||.+..+...+.|...|...|++...+..... +.-..+|.+ ++..+ .+-|+|.
T Consensus 409 ~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~-~~EA~IIa~--AG~~g--aVTIATN 483 (764)
T PRK12326 409 AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKND-AEEARIIAE--AGKYG--AVTVSTQ 483 (764)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCch-HhHHHHHHh--cCCCC--cEEEEec
Confidence 456889999999999999999999999999999999999999999999998743 333445544 23333 4789999
Q ss_pred ccccccCccCC---------------CEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 686 AGGLGINLATA---------------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 686 agg~GINL~~A---------------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
-+|+|.|+.-. =+||.-..+=|-..+.|..||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 99999887632 3889888888999999999999999988766544
No 125
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.29 E-value=1.8e-10 Score=151.06 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=88.6
Q ss_pred cCceEEEEecchhhHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTFKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~~g---~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~V 699 (1272)
....+|||......++.+.+.|...+ +.+.-++|+++.++|+.++..+ + . ..+|+||..+..||+++.+++|
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~-~-rkIVLATNIAEtSLTIpgV~yV 352 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---S-G-RRIVLATNVAETSLTVPGIHYV 352 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---C-C-ceEEEeccHHHhccccCCeeEE
Confidence 34689999999999999999998764 4578899999999999885433 2 2 3479999999999999999999
Q ss_pred EEecCC----C--------------ChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHH
Q 000811 700 IIYDSD----W--------------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1272)
Q Consensus 700 Ii~D~d----W--------------Np~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE 740 (1272)
|-++.. + +-....||.||++|.| +-.+|+|+++...+.
T Consensus 353 IDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 353 IDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS 408 (1283)
T ss_pred EeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh
Confidence 987621 2 3457899999999987 667899998765543
No 126
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.28 E-value=2.6e-10 Score=148.91 Aligned_cols=109 Identities=15% Similarity=0.131 Sum_probs=87.2
Q ss_pred cCceEEEEecchhhHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEE
Q 000811 623 QGHRVLIYSQFQHMLDLLEDYLTFKKWQ---YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTV 699 (1272)
Q Consensus 623 ~g~KVLIFsq~~~~ldiL~~~L~~~g~~---~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~V 699 (1272)
....+|||+.....++.+.+.|...+++ +.-++|+++..+|+.+++.+ +...+|++|..++.||+++..++|
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~-----g~rkIIVATNIAEtSITIpgI~yV 359 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH-----SGRRIVLATNVAETSLTVPGIKYV 359 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc-----CCeeEEEeccHHhhccccCcceEE
Confidence 3468999999999999999999887765 56789999999999886542 334589999999999999999999
Q ss_pred EEec---------------CCCCh---hhHHHHHHhhhhcCCCCceEEEEEeeCCCHH
Q 000811 700 IIYD---------------SDWNP---HADLQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1272)
Q Consensus 700 Ii~D---------------~dWNp---~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvE 739 (1272)
|.++ .+-.| ..+.||.||++|. .+-.+|+|+++..++
T Consensus 360 ID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~~ 414 (1294)
T PRK11131 360 IDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDFL 414 (1294)
T ss_pred EECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHHH
Confidence 9875 22222 5678888888887 467788999876543
No 127
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.28 E-value=2.1e-10 Score=147.07 Aligned_cols=355 Identities=16% Similarity=0.150 Sum_probs=208.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC---CCcEEEEecCcc-HHHHHHHHHHHCCCC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLST-LRNWEREFATWAPQM 359 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~---~~p~LIVvP~sl-l~qW~~E~~~~~p~~ 359 (1272)
...+++|..++++....+..+.-++|..+||.|||..++..+.+..... ...++.|.|..+ +.+-.+.+..++...
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~ 273 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF 273 (733)
T ss_pred chhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc
Confidence 3468999999999877766665899999999999999998888887763 448888888655 566777788877555
Q ss_pred eEEEE--EcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc------cCCCccee
Q 000811 360 NVVMY--VGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS------LKPIKWQC 431 (1272)
Q Consensus 360 ~vv~~--~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~------L~~~~w~~ 431 (1272)
.+..- +|.....-. ...+. . ..............-+.+.+++.......... +..+.-.+
T Consensus 274 ~~~~~~~h~~~~~~~~-~~~~~---~--------~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~ 341 (733)
T COG1203 274 SVIGKSLHSSSKEPLL-LEPDQ---D--------ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSL 341 (733)
T ss_pred ccccccccccccchhh-hcccc---c--------cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhc
Confidence 55444 555443221 11100 0 00000000000112223333333322221111 22344568
Q ss_pred EEeccccccCCc-chHHHHHH-Hhcc--cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHH
Q 000811 432 MIVDEGHRLKNK-DSKLFSSL-KQYS--TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISR 507 (1272)
Q Consensus 432 vIvDEaHrlKn~-~S~~~~~l-~~l~--~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~ 507 (1272)
+|+||+|-+--. ......++ ..+. ....|++|||+- ..|.+.
T Consensus 342 vIlDE~h~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP----------------------~~~~~~------------ 387 (733)
T COG1203 342 VILDEVHLYADETMLAALLALLEALAEAGVPVLLMSATLP----------------------PFLKEK------------ 387 (733)
T ss_pred hhhccHHhhcccchHHHHHHHHHHHHhCCCCEEEEecCCC----------------------HHHHHH------------
Confidence 999999988655 23322222 2222 457899999971 111111
Q ss_pred HHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCccccc
Q 000811 508 LHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLE 587 (1272)
Q Consensus 508 L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~ 587 (1272)
|...+.. ... .+ .+.+ .+ ..++.|.+..
T Consensus 388 l~~~~~~----~~~-~~---~~~~-----~~---------------------------------------~~~~e~~~~~ 415 (733)
T COG1203 388 LKKALGK----GRE-VV---ENAK-----FC---------------------------------------PKEDEPGLKR 415 (733)
T ss_pred HHHHHhc----ccc-ee---cccc-----cc---------------------------------------cccccccccc
Confidence 1111100 000 00 0000 00 0001111110
Q ss_pred CCCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q 000811 588 GVEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRI 667 (1272)
Q Consensus 588 ~~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I 667 (1272)
....+.. .... ..+...+..-...|.+|+|-++.+..+-.+...|+..+.+++.+++..+..+|.+.+
T Consensus 416 ~~~~~~~-----------~~~~-~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke 483 (733)
T COG1203 416 KERVDVE-----------DGPQ-EELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKE 483 (733)
T ss_pred ccchhhh-----------hhhh-HhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHH
Confidence 0000000 0000 112223333445689999999999999999999998888899999999999999998
Q ss_pred HHHhcc--CCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcC--CCCceEEEEEeeCCCHHHHHH
Q 000811 668 DRFNAK--NSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG--QTNKVMIFRLITRGSIEERMM 743 (1272)
Q Consensus 668 ~~Fn~~--~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiG--Q~k~V~Vyrlit~~TvEE~I~ 743 (1272)
....+- .... .++|+|++...|+|+. .|.+|- |+. -....+||.||++|-| ....+.||...-......+.+
T Consensus 484 ~~l~~~~~~~~~-~IvVaTQVIEagvDid-fd~mIT-e~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~ 559 (733)
T COG1203 484 RELKKLFKQNEG-FIVVATQVIEAGVDID-FDVLIT-ELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSY 559 (733)
T ss_pred HHHHHHHhccCC-eEEEEeeEEEEEeccc-cCeeee-cCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhh
Confidence 876531 2222 3899999999999998 666653 332 2677899999999999 566788888887777777777
Q ss_pred HHHHHHHHH
Q 000811 744 QMTKKKMVL 752 (1272)
Q Consensus 744 ~~~~~K~~L 752 (1272)
+....++.-
T Consensus 560 ~~~~~~~~~ 568 (733)
T COG1203 560 EKLEKKLKS 568 (733)
T ss_pred hcchhhhcc
Confidence 776666543
No 128
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.24 E-value=1.2e-10 Score=131.15 Aligned_cols=309 Identities=18% Similarity=0.250 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC--CCcEEEEecCccHHHH-HHHHHHHCCCC--eEE
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER--ISPHLVVAPLSTLRNW-EREFATWAPQM--NVV 362 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~--~~p~LIVvP~sll~qW-~~E~~~~~p~~--~vv 362 (1272)
.-|..|+-=+ .+|.+++.-...|+|||.+-...+....... ..-+||++|...|.+- ..-...|.+.. ++.
T Consensus 51 aIQqraI~p~----i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~ 126 (397)
T KOG0327|consen 51 AIQQRAILPC----IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVSVH 126 (397)
T ss_pred HHHhcccccc----ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhcccceeee
Confidence 3455554322 5678999999999999998433333332221 1267999998877543 33344555444 444
Q ss_pred EEEcChhHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh--hhhccCCCcceeEEeccccc
Q 000811 363 MYVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL--DSASLKPIKWQCMIVDEGHR 439 (1272)
Q Consensus 363 ~~~G~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~--d~~~L~~~~w~~vIvDEaHr 439 (1272)
...|....+ ..- .......+|++.|+..+.. +...|..-...+.|+|||..
T Consensus 127 ~~igg~~~~~~~~--------------------------~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDE 180 (397)
T KOG0327|consen 127 ACIGGTNVRREDQ--------------------------ALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADE 180 (397)
T ss_pred eecCcccchhhhh--------------------------hhhccCceeecCCchhHHHhhccccccccceeEEeecchHh
Confidence 344433222 110 0012457899999865532 22356666678999999988
Q ss_pred cCCc--chHHHHHHHhcccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhhhh
Q 000811 440 LKNK--DSKLFSSLKQYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHL 516 (1272)
Q Consensus 440 lKn~--~S~~~~~l~~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p~~ 516 (1272)
.... .-+++..+..+..+ ..+++|||-- .++.
T Consensus 181 mLs~gfkdqI~~if~~lp~~vQv~l~SAT~p----~~vl----------------------------------------- 215 (397)
T KOG0327|consen 181 MLSRGFKDQIYDIFQELPSDVQVVLLSATMP----SDVL----------------------------------------- 215 (397)
T ss_pred hhccchHHHHHHHHHHcCcchhheeecccCc----HHHH-----------------------------------------
Confidence 7544 45667777777644 5678888831 0100
Q ss_pred HHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccc
Q 000811 517 LRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDT 596 (1272)
Q Consensus 517 lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~ 596 (1272)
+-+++ .+. ....+.+.-...+.+.. + +-|..
T Consensus 216 -~vt~~-----f~~-~pv~i~vkk~~ltl~gi----------------------------k----q~~i~---------- 246 (397)
T KOG0327|consen 216 -EVTKK-----FMR-EPVRILVKKDELTLEGI----------------------------K----QFYIN---------- 246 (397)
T ss_pred -HHHHH-----hcc-CceEEEecchhhhhhhe----------------------------e----eeeee----------
Confidence 00000 000 00111111000000000 0 00000
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCC
Q 000811 597 NESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSS 676 (1272)
Q Consensus 597 ~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~ 676 (1272)
+....|+..|..+.+ .-...+||++..+-++.|.+.|..+++....++|.+...+|..++..|+.+.+.
T Consensus 247 -------v~k~~k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssr 315 (397)
T KOG0327|consen 247 -------VEKEEKLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSR 315 (397)
T ss_pred -------ccccccccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCce
Confidence 000116667777766 234689999999999999999999999999999999999999999999876654
Q ss_pred ceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 677 ~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
+|++|...+.||+++.++.||+||.|-|..+|+.++||++|.|-+-- ...++++.
T Consensus 316 ---vlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~--~in~v~~~ 370 (397)
T KOG0327|consen 316 ---VLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGV--AINFVTEE 370 (397)
T ss_pred ---EEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCce--eeeeehHh
Confidence 89999999999999999999999999999999999999999997643 33566654
No 129
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.24 E-value=5e-11 Score=134.49 Aligned_cols=313 Identities=19% Similarity=0.255 Sum_probs=207.3
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhC-CCC-cEEEEecCccH-HH---HHHHHHHHCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE-RIS-PHLVVAPLSTL-RN---WEREFATWAP 357 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~-~~~-p~LIVvP~sll-~q---W~~E~~~~~p 357 (1272)
+..|.|...++-+ ..+...+-..-+|.|||..- |-.+..|... ..+ +.||+.|+.-| .| ...++.+++
T Consensus 43 ~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt- 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT- 117 (529)
T ss_pred CCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-
Confidence 4667777776544 45566666677999999874 3344444432 223 89999997554 33 445555555
Q ss_pred CCeEE-EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--ccCCCcceeEEe
Q 000811 358 QMNVV-MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--SLKPIKWQCMIV 434 (1272)
Q Consensus 358 ~~~vv-~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~L~~~~w~~vIv 434 (1272)
.++.. .+.|++.+.+.+.- ..+.|||+.|+..+..-.. .|.--...|||+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l---------------------------~~npDii~ATpgr~~h~~vem~l~l~sveyVVf 170 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILL---------------------------NENPDIIIATPGRLLHLGVEMTLTLSSVEYVVF 170 (529)
T ss_pred chhhhhhcccchHHHHHHHh---------------------------ccCCCEEEecCceeeeeehheeccccceeeeee
Confidence 55555 45555544432211 1357899988877644221 233345679999
Q ss_pred ccccccCC--cchHHHHHHHhccc-ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHH
Q 000811 435 DEGHRLKN--KDSKLFSSLKQYST-RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRM 511 (1272)
Q Consensus 435 DEaHrlKn--~~S~~~~~l~~l~~-~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~ 511 (1272)
|||.+|-. ..-++.+.+..+.. ...+++|||- .+.+. +|. +.-
T Consensus 171 dEadrlfemgfqeql~e~l~rl~~~~QTllfSatl-p~~lv------------------~fa---------------kaG 216 (529)
T KOG0337|consen 171 DEADRLFEMGFQEQLHEILSRLPESRQTLLFSATL-PRDLV------------------DFA---------------KAG 216 (529)
T ss_pred hhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccC-chhhH------------------HHH---------------Hcc
Confidence 99999954 45678888888864 4679999994 11111 110 000
Q ss_pred hhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCC
Q 000811 512 LAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEP 591 (1272)
Q Consensus 512 L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~ 591 (1272)
+ .||.... +.|+ ++. +-..+++.
T Consensus 217 l---------------~~p~lVR-ldve-------------tki---------------se~lk~~f------------- 239 (529)
T KOG0337|consen 217 L---------------VPPVLVR-LDVE-------------TKI---------------SELLKVRF------------- 239 (529)
T ss_pred C---------------CCCceEE-eehh-------------hhc---------------chhhhhhe-------------
Confidence 0 1111111 1111 000 00001111
Q ss_pred CcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q 000811 592 DIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFN 671 (1272)
Q Consensus 592 ~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn 671 (1272)
..+....|...|..++..... .++.+||+.....++.+...|+..|+....|.|++...-|..-+.+|+
T Consensus 240 ----------~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~ 308 (529)
T KOG0337|consen 240 ----------FRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFR 308 (529)
T ss_pred ----------eeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhcccccc
Confidence 112234566666666665443 458999999999999999999999999999999999999999999997
Q ss_pred ccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 672 AKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 672 ~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
..... +|++|+.+..|++++-.|.||.||.+-.+..+..+.||+.|-|.+- .-|-||+..
T Consensus 309 ~~k~~---~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg--~aYs~V~~~ 368 (529)
T KOG0337|consen 309 GRKTS---ILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTG--RAYSLVAST 368 (529)
T ss_pred CCccc---eEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccc--eEEEEEecc
Confidence 65544 8999999999999999999999999999999999999999998764 456677654
No 130
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=9.5e-10 Score=137.95 Aligned_cols=121 Identities=16% Similarity=0.165 Sum_probs=98.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
....|+..+.+-+..+.+.|..|||-+.++..-+.|..+|...|+++..+..... +.-..+|. +++..+ .+-|+|
T Consensus 430 t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa--~AG~~G--aVTIAT 504 (913)
T PRK13103 430 TAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIA--QAGRPG--ALTIAT 504 (913)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHH--cCCCCC--cEEEec
Confidence 3467999999999999999999999999999999999999999999988887643 33344554 344444 468999
Q ss_pred cccccccCcc-------------------------------------CCCEEEEecCCCChhhHHHHHHhhhhcCCCCce
Q 000811 685 RAGGLGINLA-------------------------------------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKV 727 (1272)
Q Consensus 685 ragg~GINL~-------------------------------------~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V 727 (1272)
.-+|+|.|+. ..=+||.-..+=|-..|.|..||++|.|.....
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999998874 123788889999999999999999999988766
Q ss_pred EEE
Q 000811 728 MIF 730 (1272)
Q Consensus 728 ~Vy 730 (1272)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 544
No 131
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.18 E-value=2.1e-10 Score=120.46 Aligned_cols=155 Identities=21% Similarity=0.270 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecC-ccHHHHHHHHHHHCC--CCeEEE
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPL-STLRNWEREFATWAP--QMNVVM 363 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~-sll~qW~~E~~~~~p--~~~vv~ 363 (1272)
|+|.+++.-+ ..+.+.++..++|.|||..++..+......+ ...+||++|. +++.+-..++..++. ..++..
T Consensus 2 ~~Q~~~~~~i----~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAI----ISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHH----HTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHH----HcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 7999998877 3678899999999999999876665544443 3499999995 677888889988885 468888
Q ss_pred EEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc--cCCCcceeEEeccccccC
Q 000811 364 YVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS--LKPIKWQCMIVDEGHRLK 441 (1272)
Q Consensus 364 ~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~--L~~~~w~~vIvDEaHrlK 441 (1272)
++|........... -....+|+|+|++.+...... +.-...++||+||+|.+-
T Consensus 78 ~~~~~~~~~~~~~~-------------------------~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~ 132 (169)
T PF00270_consen 78 LHGGQSISEDQREV-------------------------LSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS 132 (169)
T ss_dssp ESTTSCHHHHHHHH-------------------------HHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH
T ss_pred cccccccccccccc-------------------------ccccccccccCcchhhccccccccccccceeeccCcccccc
Confidence 87765422111110 013578999999999765443 112347899999999996
Q ss_pred Cc--chHHHHHHHhc---ccccEEEEeccCCCCCHH
Q 000811 442 NK--DSKLFSSLKQY---STRHRVLLTGTPLQNNLD 472 (1272)
Q Consensus 442 n~--~S~~~~~l~~l---~~~~rllLTGTPlqN~~~ 472 (1272)
.. .......+..+ ...+.+++||||- .+++
T Consensus 133 ~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~ 167 (169)
T PF00270_consen 133 DETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVE 167 (169)
T ss_dssp HTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHH
T ss_pred cccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHh
Confidence 63 22333334444 2356899999995 4443
No 132
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.18 E-value=3.4e-10 Score=123.03 Aligned_cols=153 Identities=20% Similarity=0.200 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhC---CCCcEEEEecC-ccHHHHHHHHHHHCC--
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGE---RISPHLVVAPL-STLRNWEREFATWAP-- 357 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~---~~~p~LIVvP~-sll~qW~~E~~~~~p-- 357 (1272)
.+++||.++++-+ .++.++++..++|.|||++. +.++..+... ....+|||+|. .++.|+...+..+..
T Consensus 21 ~~~~~Q~~~~~~~----~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPL----LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 5899999999776 34889999999999999985 4445555544 23379999995 677889998888864
Q ss_pred CCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh--hccCCCcceeEEec
Q 000811 358 QMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS--ASLKPIKWQCMIVD 435 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~--~~L~~~~w~~vIvD 435 (1272)
+.++..++|..........+ ....+|+|+|.+.+.... ..+.--.++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvD 150 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKL--------------------------KRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLD 150 (203)
T ss_pred CceEEEEECCCCHHHHHHHh--------------------------cCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEe
Confidence 57777888876544322221 125689999988765421 11222356899999
Q ss_pred cccccCCcc-h-HHHHHHHhcc-cccEEEEeccCC
Q 000811 436 EGHRLKNKD-S-KLFSSLKQYS-TRHRVLLTGTPL 467 (1272)
Q Consensus 436 EaHrlKn~~-S-~~~~~l~~l~-~~~rllLTGTPl 467 (1272)
|+|.+.+.. . .+...+..+. ....+++||||-
T Consensus 151 E~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 151 EADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred ChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 999986543 2 2233334444 356799999985
No 133
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.16 E-value=1.5e-09 Score=120.16 Aligned_cols=298 Identities=16% Similarity=0.148 Sum_probs=191.4
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv 362 (1272)
.+.||.|++++|-. ..+..++|...+|-||++..-. -.|.. .|-.|||||+ |++....-.++....+...+
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyql--pal~a--dg~alvi~plislmedqil~lkqlgi~as~l 164 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQL--PALCA--DGFALVICPLISLMEDQILQLKQLGIDASML 164 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhhh--hHHhc--CCceEeechhHHHHHHHHHHHHHhCcchhhc
Confidence 35899999999876 6789999999999999976321 11112 2578999996 77777666777765333322
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh-------ccCCCcceeEEec
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA-------SLKPIKWQCMIVD 435 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~-------~L~~~~w~~vIvD 435 (1272)
--..++..-... .-++ ......|..+..|++.+.+... .+..-.|.+|-||
T Consensus 165 nansske~~k~v-~~~i---------------------~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 165 NANSSKEEAKRV-EAAI---------------------TNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred cCcccHHHHHHH-HHHH---------------------cCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 222222221111 1111 1123578889999988865433 3344467899999
Q ss_pred cccccCC-------cchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHH
Q 000811 436 EGHRLKN-------KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRL 508 (1272)
Q Consensus 436 EaHrlKn-------~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L 508 (1272)
|+|.+.. ..+.+...-++|+....++||||...+-+.+.-.+|..-..
T Consensus 223 evhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~------------------------- 277 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAA------------------------- 277 (695)
T ss_pred ceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhh-------------------------
Confidence 9998743 22333333456677788999999865555443333221000
Q ss_pred HHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccC
Q 000811 509 HRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 509 ~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
...|--.|.|.|.-.
T Consensus 278 -----------------------------------------------------------------~tf~a~fnr~nl~ye 292 (695)
T KOG0353|consen 278 -----------------------------------------------------------------FTFRAGFNRPNLKYE 292 (695)
T ss_pred -----------------------------------------------------------------heeecccCCCCceeE
Confidence 000111122222221
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRID 668 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~ 668 (1272)
+...+...++-+ .-+.+++..-. .|..-||||-...-.+.+...|...|+....++..+.+.+|.-+-.
T Consensus 293 v~qkp~n~dd~~----------edi~k~i~~~f-~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq 361 (695)
T KOG0353|consen 293 VRQKPGNEDDCI----------EDIAKLIKGDF-AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQ 361 (695)
T ss_pred eeeCCCChHHHH----------HHHHHHhcccc-CCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccc
Confidence 111111111111 11222232211 3678899999999999999999999999999999999998888877
Q ss_pred HHhccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHH
Q 000811 669 RFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAM 715 (1272)
Q Consensus 669 ~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~ 715 (1272)
.+-+ +.+-+++.|-|.|.||+-+.+..||+-..+-+-.++-||-
T Consensus 362 ~w~a---~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqas 405 (695)
T KOG0353|consen 362 GWIA---GEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQAS 405 (695)
T ss_pred cccc---cceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHH
Confidence 7754 4556899999999999999999999999999999999954
No 134
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.14 E-value=3e-09 Score=120.03 Aligned_cols=320 Identities=16% Similarity=0.179 Sum_probs=201.7
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEEEEEc
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVG 366 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G 366 (1272)
|.|..+++-+. ..+..+.+++++|.||++..- |-.|...+ -++||.|+ .++....+.+.+.--....+--.-
T Consensus 23 ~LQE~A~~c~V---K~k~DVyVsMPTGaGKSLCyQ--LPaL~~~g--ITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKl 95 (641)
T KOG0352|consen 23 RLQEQAINCIV---KRKCDVYVSMPTGAGKSLCYQ--LPALVHGG--ITIVISPLIALIKDQIDHLKRLKVPCESLNSKL 95 (641)
T ss_pred hHHHHHHHHHH---hccCcEEEeccCCCchhhhhh--chHHHhCC--eEEEehHHHHHHHHHHHHHHhcCCchhHhcchh
Confidence 67888887653 567889999999999997631 11222333 67888885 555556666655421110000011
Q ss_pred ChhHHH-HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-----hcc-CCCcceeEEeccccc
Q 000811 367 TSQARN-IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS-----ASL-KPIKWQCMIVDEGHR 439 (1272)
Q Consensus 367 ~~~~r~-~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~-----~~L-~~~~w~~vIvDEaHr 439 (1272)
+..+|. ++.+.+ .......++.+|+++...+. ..| ......+++|||||.
T Consensus 96 St~ER~ri~~DL~-----------------------~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHC 152 (641)
T KOG0352|consen 96 STVERSRIMGDLA-----------------------KEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHC 152 (641)
T ss_pred hHHHHHHHHHHHH-----------------------hcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhh
Confidence 122222 222221 12234457788888875531 112 233567999999998
Q ss_pred cCCcch------HHHHHHHh-cccccEEEEeccCCCCCHHHHHHHHHhhcCCC-CCChHHHHH-HHhhhhhHHHHHHHHH
Q 000811 440 LKNKDS------KLFSSLKQ-YSTRHRVLLTGTPLQNNLDELFMLMHFLDAGK-FGSLEEFQE-EFKDINQEEQISRLHR 510 (1272)
Q Consensus 440 lKn~~S------~~~~~l~~-l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~-f~~~~~F~~-~f~~~~~~~~i~~L~~ 510 (1272)
+.-.+- ...-+|+. +..--.+.||||.-..--+++|..|++-.|-. |.+. .|.. .|-+
T Consensus 153 VSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP-~FR~NLFYD------------ 219 (641)
T KOG0352|consen 153 VSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTP-TFRDNLFYD------------ 219 (641)
T ss_pred HhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCc-chhhhhhHH------------
Confidence 754322 12222322 22334688999987777888999988777642 2221 1211 1100
Q ss_pred HhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCC
Q 000811 511 MLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVE 590 (1272)
Q Consensus 511 ~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e 590 (1272)
..|+.+++..+..|. .--++|...|--+....
T Consensus 220 -----------------------------------~~~K~~I~D~~~~La-------------DF~~~~LG~~~~~~~~~ 251 (641)
T KOG0352|consen 220 -----------------------------------NHMKSFITDCLTVLA-------------DFSSSNLGKHEKASQNK 251 (641)
T ss_pred -----------------------------------HHHHHHhhhHhHhHH-------------HHHHHhcCChhhhhcCC
Confidence 011222222111111 11222322221111000
Q ss_pred CCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Q 000811 591 PDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRF 670 (1272)
Q Consensus 591 ~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~F 670 (1272)
+...---||||......+.+.-.|..+|++..-++.+....+|..+-+.+
T Consensus 252 ------------------------------K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~W 301 (641)
T KOG0352|consen 252 ------------------------------KTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKW 301 (641)
T ss_pred ------------------------------CCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHH
Confidence 00112469999999999999999999999999999999999999999999
Q ss_pred hccCCCceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEE
Q 000811 671 NAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFR 731 (1272)
Q Consensus 671 n~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyr 731 (1272)
-+++.. ++++|-+.|.|++-+++..||+++++-|-+-|-|--|||+|-|-..-++.|+
T Consensus 302 M~~~~P---vI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 302 MNNEIP---VIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hcCCCC---EEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccCCCccceeeee
Confidence 876665 7899999999999999999999999999999999999999999888887765
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.12 E-value=9.2e-09 Score=127.93 Aligned_cols=120 Identities=18% Similarity=0.222 Sum_probs=99.4
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+.+.|..|||.+..+...+.|..+|...|++...++.... ++++.|-. +++..+ .+.|+|.
T Consensus 408 ~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~G--aVTIATN 482 (925)
T PRK12903 408 KHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKG--AITIATN 482 (925)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCC--eEEEecc
Confidence 457888898989999999999999999999999999999999999999998643 34433332 444444 5799999
Q ss_pred ccccccCccCCC--------EEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 686 AGGLGINLATAD--------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 686 agg~GINL~~Ad--------~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
.+|+|.|+.-.. +||....+=|-..+.|..||++|.|.......|
T Consensus 483 MAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 483 MAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred cccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 999999987544 899999999999999999999999988765543
No 136
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.10 E-value=1.8e-09 Score=141.26 Aligned_cols=86 Identities=14% Similarity=0.134 Sum_probs=63.9
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc-HHHHHH-HHH---HHC
Q 000811 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWER-EFA---TWA 356 (1272)
Q Consensus 282 ~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~-E~~---~~~ 356 (1272)
.|.+.||+|.+.+..+...+..+..+++-..||+|||+..+.-+..... ...+++|.||+.. ..||.. ++. +.+
T Consensus 242 ~~~~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 242 LGLEYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred cCCccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 4568999999988888777788888889999999999987666554433 3359999999755 567643 444 333
Q ss_pred C-CCeEEEEEcCh
Q 000811 357 P-QMNVVMYVGTS 368 (1272)
Q Consensus 357 p-~~~vv~~~G~~ 368 (1272)
+ ++++++..|..
T Consensus 321 ~~~~~~~~~kG~~ 333 (850)
T TIGR01407 321 NFKINAALIKGKS 333 (850)
T ss_pred CCCceEEEEEcch
Confidence 3 47788777755
No 137
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.08 E-value=9.5e-08 Score=111.62 Aligned_cols=132 Identities=20% Similarity=0.291 Sum_probs=107.8
Q ss_pred HHHHHHHH---HHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecccccc
Q 000811 613 LDKMMVKL---KEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGL 689 (1272)
Q Consensus 613 L~klL~~l---~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~ 689 (1272)
+++++.++ .+.|.||||-+-..+|.+-|.+||...|+++..++..+..-+|..+|..... +.|-+|+....+-+
T Consensus 432 vdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~---G~~DvLVGINLLRE 508 (663)
T COG0556 432 VDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRL---GEFDVLVGINLLRE 508 (663)
T ss_pred HHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhc---CCccEEEeehhhhc
Confidence 45555544 5578999999999999999999999999999999999999999999999976 45558999999999
Q ss_pred ccCccCCCEEEEecCCC-----ChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHHHHHHH
Q 000811 690 GINLATADTVIIYDSDW-----NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMMQMTKK 748 (1272)
Q Consensus 690 GINL~~Ad~VIi~D~dW-----Np~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~~~~~ 748 (1272)
||+|+.++.|.|+|.|- +-...+|.+|||-|--.. .|..|-=...+++++.|-+...+
T Consensus 509 GLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET~RR 571 (663)
T COG0556 509 GLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDETERR 571 (663)
T ss_pred cCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHHHHH
Confidence 99999999999999985 778899999999995433 45444444445666666554433
No 138
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.08 E-value=4.5e-09 Score=131.50 Aligned_cols=73 Identities=29% Similarity=0.479 Sum_probs=60.8
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEE-----ecCC---C---ChhhHHHHHH
Q 000811 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII-----YDSD---W---NPHADLQAMA 716 (1272)
Q Consensus 648 g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi-----~D~d---W---Np~~~~Qa~g 716 (1272)
.|.+..-+.+++..+|...-+.|.+ +.+-+|+||...+-|+||++ +|||| |||. | +|...+|.+|
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~---g~iqvlvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlg 682 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFAD---GHIQVLVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLG 682 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhc---CceeEEEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHh
Confidence 4678888999999999999999966 44458999999999999984 67776 6664 4 6899999999
Q ss_pred hhhhcCCC
Q 000811 717 RAHRLGQT 724 (1272)
Q Consensus 717 RahRiGQ~ 724 (1272)
||+|.+-.
T Consensus 683 ragrp~~D 690 (1674)
T KOG0951|consen 683 RAGRPQYD 690 (1674)
T ss_pred hcCCCccC
Confidence 99997643
No 139
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.86 E-value=1.6e-08 Score=113.29 Aligned_cols=237 Identities=21% Similarity=0.262 Sum_probs=145.0
Q ss_pred CCCC-CCCCCCCcHHHHHHHHHHHHhhc------CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-CccHHH
Q 000811 276 HSPE-FLSGGSLHPYQLEGLNFLRFSWS------KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRN 347 (1272)
Q Consensus 276 ~~P~-~~~g~~Lr~yQlegv~wL~~~~~------~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~sll~q 347 (1272)
..|. .+..+.|-.-|+++|-+..+.+. .+.+.+|.|.+|.||.-|..++|..-+..+..+.|.|.. ..+...
T Consensus 27 ~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~D 106 (303)
T PF13872_consen 27 HLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYD 106 (303)
T ss_pred CCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhH
Confidence 4444 45668999999999998876665 367889999999999999999998877666665555555 556666
Q ss_pred HHHHHHHHCCC-CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhh-----
Q 000811 348 WEREFATWAPQ-MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDS----- 421 (1272)
Q Consensus 348 W~~E~~~~~p~-~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~----- 421 (1272)
-.+.+..-... +.+..+.. . +.+ .....+..|+++||.++....
T Consensus 107 a~RDl~DIG~~~i~v~~l~~----------~--------------~~~------~~~~~~~GvlF~TYs~L~~~~~~~~~ 156 (303)
T PF13872_consen 107 AERDLRDIGADNIPVHPLNK----------F--------------KYG------DIIRLKEGVLFSTYSTLISESQSGGK 156 (303)
T ss_pred HHHHHHHhCCCcccceechh----------h--------------ccC------cCCCCCCCccchhHHHHHhHHhccCC
Confidence 66666654311 11111110 0 000 001246679999999997763
Q ss_pred --hccCC-Ccc------eeEEeccccccCCcch------HHHHHHHhc----ccccEEEEeccCCCCCHHHHHHHHHhh-
Q 000811 422 --ASLKP-IKW------QCMIVDEGHRLKNKDS------KLFSSLKQY----STRHRVLLTGTPLQNNLDELFMLMHFL- 481 (1272)
Q Consensus 422 --~~L~~-~~w------~~vIvDEaHrlKn~~S------~~~~~l~~l----~~~~rllLTGTPlqN~~~EL~~Ll~fL- 481 (1272)
..|.. +.| .+||+||||+.||..+ +...++..+ ...+.+..|||.... +..|- .+.-|
T Consensus 157 ~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgase-p~Nma-Ym~RLG 234 (303)
T PF13872_consen 157 YRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASE-PRNMA-YMSRLG 234 (303)
T ss_pred ccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCC-Cceee-eeeecc
Confidence 22222 134 3899999999999755 555565544 345789999998632 22221 11111
Q ss_pred --c-CCCCCChHHHHHHHhhhh--hHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHHHHHHHHH
Q 000811 482 --D-AGKFGSLEEFQEEFKDIN--QEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKA 550 (1272)
Q Consensus 482 --~-p~~f~~~~~F~~~f~~~~--~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~Q~~~Y~~ 550 (1272)
. ...|.+..+|.+....-. ..+.+..-.+. ...+++|.. ++-.....++.++|++.|.++|+.
T Consensus 235 LWG~gtpf~~~~~f~~a~~~gGv~amE~vA~dlKa-~G~yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 235 LWGPGTPFPDFDDFLEAMEKGGVGAMEMVAMDLKA-RGMYIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred ccCCCCCCCCHHHHHHHHHhcCchHHHHHHHHHHh-cchheeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 1 124677788877664321 11111111111 223444433 344556788999999999999974
No 140
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.83 E-value=1.9e-07 Score=117.28 Aligned_cols=84 Identities=14% Similarity=0.226 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCH-HHHHHHHHHHhccCCCceEEEeec
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGG-AERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~-~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
...|...+.+-+..+.+.|..|||-+.++..-+.|...|...|+++..+...... +.-..+|.+ ++..+ .+-|+|
T Consensus 406 ~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~--AG~~G--~VTIAT 481 (870)
T CHL00122 406 ELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQ--AGRKG--SITIAT 481 (870)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHh--cCCCC--cEEEec
Confidence 3468888888888889999999999999999999999999999999999987432 444456655 33334 478999
Q ss_pred cccccccCc
Q 000811 685 RAGGLGINL 693 (1272)
Q Consensus 685 ragg~GINL 693 (1272)
..+|+|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999775
No 141
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.83 E-value=3.9e-08 Score=120.62 Aligned_cols=168 Identities=18% Similarity=0.261 Sum_probs=112.7
Q ss_pred cccccCCCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH-HH
Q 000811 271 FQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN-WE 349 (1272)
Q Consensus 271 ~~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q-W~ 349 (1272)
|..+-..|....+.+|-.+|.+++--| ..|..+++|.-|-.|||+.|=..++.- ..+..+.+.-.|...|+| =.
T Consensus 283 f~~lVpe~a~~~pFelD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAiala-q~h~TR~iYTSPIKALSNQKf 357 (1248)
T KOG0947|consen 283 FYQLVPEMALIYPFELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALA-QKHMTRTIYTSPIKALSNQKF 357 (1248)
T ss_pred HHHhchhHHhhCCCCccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHH-HhhccceEecchhhhhccchH
Confidence 333333444445578999999998666 889999999999999999974333322 223347888999777755 45
Q ss_pred HHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hhccC
Q 000811 350 REFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLK 425 (1272)
Q Consensus 350 ~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----~~~L~ 425 (1272)
++|+.-+.+.. .++|+..- .....++|+|-|+++.- .+.++
T Consensus 358 RDFk~tF~Dvg--LlTGDvqi---------------------------------nPeAsCLIMTTEILRsMLYrgadliR 402 (1248)
T KOG0947|consen 358 RDFKETFGDVG--LLTGDVQI---------------------------------NPEASCLIMTTEILRSMLYRGADLIR 402 (1248)
T ss_pred HHHHHhccccc--eeecceee---------------------------------CCCcceEeehHHHHHHHHhcccchhh
Confidence 77876665554 56666432 24556899999988653 44455
Q ss_pred CCcceeEEeccccccCCcc-hHHHHHHHhcccc--cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhh
Q 000811 426 PIKWQCMIVDEGHRLKNKD-SKLFSSLKQYSTR--HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDIN 500 (1272)
Q Consensus 426 ~~~w~~vIvDEaHrlKn~~-S~~~~~l~~l~~~--~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~ 500 (1272)
.+. .||+||+|.+.+.. .-.+..+.-+-.+ ..++||||- ++..+|..|.+.+.
T Consensus 403 DvE--~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV--------------------PN~~EFA~WIGRtK 458 (1248)
T KOG0947|consen 403 DVE--FVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV--------------------PNTLEFADWIGRTK 458 (1248)
T ss_pred ccc--eEEEeeeeecccccccccceeeeeeccccceEEEEeccC--------------------CChHHHHHHhhhcc
Confidence 555 49999999996643 2344444444344 358999993 45667888876543
No 142
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.79 E-value=7.4e-07 Score=111.14 Aligned_cols=127 Identities=18% Similarity=0.244 Sum_probs=90.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH-HHHHHHHHHHC-----C
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWA-----P 357 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~~~~-----p 357 (1272)
..+...|.- |.+... .|.+.-+..+||+|||.-.+....++...+ ++.+||+|+.+| .|-..-+.+++ .
T Consensus 81 ~~~ws~QR~---WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~kg-kr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 81 FRPWSAQRV---WAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAKKG-KRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CCchHHHHH---HHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHhcC-CeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 456667775 555544 455555555999999987766666665555 699999997665 77777888887 3
Q ss_pred CCeEEEEEcChhHHH--HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEec
Q 000811 358 QMNVVMYVGTSQARN--IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVD 435 (1272)
Q Consensus 358 ~~~vv~~~G~~~~r~--~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvD 435 (1272)
...++ ||+.-..++ .+.+ ......|||+|||-.-+.+....|.+++|++|+||
T Consensus 156 ~~~~~-yh~~l~~~ekee~le------------------------~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVD 210 (1187)
T COG1110 156 DVLVV-YHSALPTKEKEEALE------------------------RIESGDFDILITTSQFLSKRFEELSKLKFDFIFVD 210 (1187)
T ss_pred ceeee-eccccchHHHHHHHH------------------------HHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEc
Confidence 33444 888743322 1111 11236899999999999999999999999999999
Q ss_pred ccccc
Q 000811 436 EGHRL 440 (1272)
Q Consensus 436 EaHrl 440 (1272)
.+..+
T Consensus 211 DVDA~ 215 (1187)
T COG1110 211 DVDAI 215 (1187)
T ss_pred cHHHH
Confidence 98754
No 143
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.78 E-value=1.7e-07 Score=119.59 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHc---------CceEEEEecchhhHHHHHHHHHh
Q 000811 605 ESSGKLQLLDKMMVKLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~---------g~KVLIFsq~~~~ldiL~~~L~~ 646 (1272)
+..+|+..|.++|.++... +.+|||||++.+++..|.++|..
T Consensus 267 Ee~PKw~~L~eiL~eI~~~~~~~~~~~~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 267 EENPKWEVLTDVLKEISHEMRMTNRLQGPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred ccCCCHHHHHHHHHHHHhHHhhhcccCCCCcEEEEEcchHHHHHHHHHHHh
Confidence 4689999999999886654 46899999999999999999965
No 144
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.77 E-value=8.5e-07 Score=111.20 Aligned_cols=377 Identities=18% Similarity=0.149 Sum_probs=202.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-CccHHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~sll~qW~~E~~~~~p~~~vv 362 (1272)
..|-+-|..+++-+..........+|.-.||+|||-.-+.++...+..+ +-+||+|| -+++.|-...|..-++ .++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G-kqvLvLVPEI~Ltpq~~~rf~~rFg-~~v~ 274 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG-KQVLVLVPEIALTPQLLARFKARFG-AKVA 274 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC-CEEEEEeccccchHHHHHHHHHHhC-CChh
Confidence 4688899999998877653456789999999999999999888888776 58999999 5888998888887774 8888
Q ss_pred EEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccccc--
Q 000811 363 MYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL-- 440 (1272)
Q Consensus 363 ~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrl-- 440 (1272)
++|..-........+.- .......|||-|...+-.- |. +-.+|||||=|.-
T Consensus 275 vlHS~Ls~~er~~~W~~----------------------~~~G~~~vVIGtRSAlF~P---f~--~LGLIIvDEEHD~sY 327 (730)
T COG1198 275 VLHSGLSPGERYRVWRR----------------------ARRGEARVVIGTRSALFLP---FK--NLGLIIVDEEHDSSY 327 (730)
T ss_pred hhcccCChHHHHHHHHH----------------------HhcCCceEEEEechhhcCc---hh--hccEEEEeccccccc
Confidence 88876555443332210 0124567888887665321 21 3468999999974
Q ss_pred CCcchHHHH--HHH----hcccccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhhhhhHHHHHHHHHHhhh
Q 000811 441 KNKDSKLFS--SLK----QYSTRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAP 514 (1272)
Q Consensus 441 Kn~~S~~~~--~l~----~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~~~~~~~i~~L~~~L~p 514 (1272)
|..++-.+. -+. ....--.+|-||||- ++-+++. ... .
T Consensus 328 Kq~~~prYhARdvA~~Ra~~~~~pvvLgSATPS---LES~~~~---~~g------------------------------~ 371 (730)
T COG1198 328 KQEDGPRYHARDVAVLRAKKENAPVVLGSATPS---LESYANA---ESG------------------------------K 371 (730)
T ss_pred cCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCC---HHHHHhh---hcC------------------------------c
Confidence 333322211 111 122345688899992 1111111 000 0
Q ss_pred hhHHHHHhhHhh-cCCCceeEEEeecCCHHHHHHHHHHHHHHHHHHHhcCCch-----hhHHHHHHHHHHHhCCcccccC
Q 000811 515 HLLRRVKKDVMK-ELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQ-----ISLINVVMELRKLCCHPYMLEG 588 (1272)
Q Consensus 515 ~~lRR~k~dv~~-~LP~k~e~~v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~-----~~l~~~l~~Lrk~c~hP~L~~~ 588 (1272)
+.+-+++.-... .+|......+.-+....-..+-..+++.....+.++.... ..+... -+.+.|.|..-.+.
T Consensus 372 y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~--l~C~~Cg~v~~Cp~ 449 (730)
T COG1198 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPL--LLCRDCGYIAECPN 449 (730)
T ss_pred eEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccce--eecccCCCcccCCC
Confidence 111111111111 1332222211111111100011122222222232221110 000000 12333444322211
Q ss_pred CCCCcccchHHHHHHHhhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh--CCCcEEEEeCCCCHHH--HH
Q 000811 589 VEPDIEDTNESFKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF--KKWQYERIDGKVGGAE--RQ 664 (1272)
Q Consensus 589 ~e~~~~~~~~~~~~li~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~--~g~~~~ridG~~~~~~--Rq 664 (1272)
-..........-.-....+|.- ..+-...-+-|...|++.-. -.+.+++.|.. -+.++.|+|++++... -+
T Consensus 450 Cd~~lt~H~~~~~L~CH~Cg~~---~~~p~~Cp~Cgs~~L~~~G~--GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~ 524 (730)
T COG1198 450 CDSPLTLHKATGQLRCHYCGYQ---EPIPQSCPECGSEHLRAVGP--GTERIEEELKRLFPGARIIRIDSDTTRRKGALE 524 (730)
T ss_pred CCcceEEecCCCeeEeCCCCCC---CCCCCCCCCCCCCeeEEecc--cHHHHHHHHHHHCCCCcEEEEccccccchhhHH
Confidence 1110000000000000000000 00000111224445555432 23444444432 3789999999987543 46
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------------ChhhHHHHHHhhhhcCCCCceEEEEE
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------------NPHADLQAMARAHRLGQTNKVMIFRL 732 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW------------Np~~~~Qa~gRahRiGQ~k~V~Vyrl 732 (1272)
.+++.|.++..+ |||.|....-|.|++....|.++|.|- ..+.+.|..||++|-+-...|.|--.
T Consensus 525 ~~l~~~~~ge~d---ILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT~ 601 (730)
T COG1198 525 DLLDQFANGEAD---ILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTY 601 (730)
T ss_pred HHHHHHhCCCCC---eeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEeC
Confidence 789999886665 899999999999999999998887653 23567899999999877777766444
Q ss_pred eeC
Q 000811 733 ITR 735 (1272)
Q Consensus 733 it~ 735 (1272)
-..
T Consensus 602 ~P~ 604 (730)
T COG1198 602 NPD 604 (730)
T ss_pred CCC
Confidence 433
No 145
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.75 E-value=6.8e-07 Score=112.12 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=68.9
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCC-CCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGK-VGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~-~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
...|...+.+-+..+.+.|..|||-+..+..-+.|...|...|++...++.. ...+.-..+|.+ ++..+ .+-|+|
T Consensus 421 ~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~--AG~~G--aVTIAT 496 (939)
T PRK12902 421 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQ--AGRKG--AVTIAT 496 (939)
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHh--cCCCC--cEEEec
Confidence 4578889998889999999999999999999999999999999999999987 333444456655 34444 468999
Q ss_pred cccccccCcc
Q 000811 685 RAGGLGINLA 694 (1272)
Q Consensus 685 ragg~GINL~ 694 (1272)
..+|+|.|+.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999996653
No 146
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.73 E-value=2e-07 Score=122.25 Aligned_cols=139 Identities=19% Similarity=0.172 Sum_probs=90.4
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCC-CcEEEEecC-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhc
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFY 380 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~ 380 (1272)
.+.+|++.|-+|+|||++++-++..+..... ..++|||-. .+-.|-..+|..+........ ...+...+++.-
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~---~~~s~~~Lk~~l-- 346 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP---KAESTSELKELL-- 346 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc---cccCHHHHHHHH--
Confidence 4567999999999999999888777776532 366777774 556888999998874433322 222222222210
Q ss_pred CCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhc----cCCCcceeEEeccccccCCcchHHHHHHHh-cc
Q 000811 381 FPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSAS----LKPIKWQCMIVDEGHRLKNKDSKLFSSLKQ-YS 455 (1272)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~----L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~-l~ 455 (1272)
....-.|+|||-+.+...... ...-+.-+||+|||||- ....+.+.++. +.
T Consensus 347 ----------------------~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G~~~~~~~~~~~ 402 (962)
T COG0610 347 ----------------------EDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYGELAKLLKKALK 402 (962)
T ss_pred ----------------------hcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--cccHHHHHHHHHhc
Confidence 001335999998888654322 23445668999999984 34444444443 34
Q ss_pred cccEEEEeccCCCCC
Q 000811 456 TRHRVLLTGTPLQNN 470 (1272)
Q Consensus 456 ~~~rllLTGTPlqN~ 470 (1272)
...-++.||||+...
T Consensus 403 ~a~~~gFTGTPi~~~ 417 (962)
T COG0610 403 KAIFIGFTGTPIFKE 417 (962)
T ss_pred cceEEEeeCCccccc
Confidence 567799999997654
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.73 E-value=9.7e-07 Score=111.73 Aligned_cols=120 Identities=18% Similarity=0.248 Sum_probs=98.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+..+.+.|..|||-+.++..-++|...|..+|++...+..... ..-..+|.+ ++..+ .+-|+|.
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h-~~EAeIVA~--AG~~G--aVTIATN 684 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLH-QKEAEIVAE--AGQPG--TVTIATN 684 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccch-hhHHHHHHh--cCCCC--cEEEecc
Confidence 457999999999999999999999999999999999999999999988877643 222344443 33334 4689999
Q ss_pred ccccccCcc--------CCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEE
Q 000811 686 AGGLGINLA--------TADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIF 730 (1272)
Q Consensus 686 agg~GINL~--------~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vy 730 (1272)
-+|+|.|+. ..=+||.-..+=|...+.|..||++|.|.......|
T Consensus 685 MAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 685 MAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred CcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 999998875 334888889999999999999999999988665543
No 148
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=98.67 E-value=7.9e-09 Score=87.86 Aligned_cols=49 Identities=41% Similarity=0.605 Sum_probs=42.2
Q ss_pred chhhhhhhccCCCcc---eEEeecccccccccccccccccccc-hHHHHHHHH
Q 000811 193 TVDRILACRGEDDEK---EYLVKYKELSYDECYWEYESDISAF-QPEIERFIK 241 (1272)
Q Consensus 193 ~veRIi~~r~~~~~~---eyLVKWkgL~Y~~~tWE~~~~~~~~-~~~i~~f~~ 241 (1272)
+|+|||++|...+.. +|||||+|+||++||||.+..+... +..|++|.+
T Consensus 2 ~Ve~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~~~~li~~f~~ 54 (55)
T PF00385_consen 2 EVERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNCFPELIEEFEK 54 (55)
T ss_dssp EEEEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSHCHHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHhhHHHHHHHhC
Confidence 689999999766555 9999999999999999999888654 667999975
No 149
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=98.65 E-value=5.4e-09 Score=111.28 Aligned_cols=53 Identities=45% Similarity=1.049 Sum_probs=46.4
Q ss_pred ccccccccccCCCCc---eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCc
Q 000811 48 DAKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1272)
Q Consensus 48 ~~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 100 (1272)
--...+|.+||.+.+ ||+||.|+++||++||.||+..+|+|.|.|..|.....
T Consensus 278 cieck~csicgtsenddqllfcddcdrgyhmyclsppm~eppegswsc~KOG~~~~ 333 (336)
T KOG1244|consen 278 CIECKYCSICGTSENDDQLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLEELK 333 (336)
T ss_pred eeecceeccccCcCCCceeEeecccCCceeeEecCCCcCCCCCCchhHHHHHHHHh
Confidence 345678999997653 99999999999999999999999999999999986543
No 150
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.64 E-value=8.7e-07 Score=113.40 Aligned_cols=157 Identities=20% Similarity=0.269 Sum_probs=105.4
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH-HHHHHHHHHHCCCC-
Q 000811 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-RNWEREFATWAPQM- 359 (1272)
Q Consensus 282 ~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-~qW~~E~~~~~p~~- 359 (1272)
-+.+|-|+|.+++.-| ..+.+++++..||.|||+.+-.++..-...+. .+....|...+ +|=.++|..-+.+.
T Consensus 116 ~~F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q-rviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 116 YPFELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-RVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CCCCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-ceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 3589999999998777 89999999999999999998766665544443 48999996555 55556665433221
Q ss_pred -eEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hhccCCCcceeEEe
Q 000811 360 -NVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKWQCMIV 434 (1272)
Q Consensus 360 -~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----~~~L~~~~w~~vIv 434 (1272)
-+-+++|+..- .....++|+|-|.++.- ...+..+. .||+
T Consensus 191 ~~vGL~TGDv~I---------------------------------N~~A~clvMTTEILRnMlyrg~~~~~~i~--~ViF 235 (1041)
T COG4581 191 DMVGLMTGDVSI---------------------------------NPDAPCLVMTTEILRNMLYRGSESLRDIE--WVVF 235 (1041)
T ss_pred hhccceecceee---------------------------------CCCCceEEeeHHHHHHHhccCcccccccc--eEEE
Confidence 12344444221 13455777777887652 34445554 5999
Q ss_pred ccccccCCcc-hHHHHHHH-hcccc-cEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000811 435 DEGHRLKNKD-SKLFSSLK-QYSTR-HRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1272)
Q Consensus 435 DEaHrlKn~~-S~~~~~l~-~l~~~-~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~ 498 (1272)
||.|.+.-.. ...+..+. .+... ..++||||= ++..+|.+|+..
T Consensus 236 DEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv--------------------~N~~EF~~Wi~~ 282 (1041)
T COG4581 236 DEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV--------------------PNAEEFAEWIQR 282 (1041)
T ss_pred EeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC--------------------CCHHHHHHHHHh
Confidence 9999996543 33444433 33333 679999994 577888888864
No 151
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.64 E-value=1.5e-06 Score=112.72 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecccccccc
Q 000811 612 LLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGI 691 (1272)
Q Consensus 612 ~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GI 691 (1272)
.+.+.|..+...+.++||+....+++..+.+.|....+.. ...|... .|.+++++|...+.. +|+.|.+..+||
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~---vLlG~~sFwEGV 708 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQ---ILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCe---EEEecchhhCCC
Confidence 3444444455567789999888999998888887655444 5556433 356789999874443 789999999999
Q ss_pred Ccc--CCCEEEEecCCC
Q 000811 692 NLA--TADTVIIYDSDW 706 (1272)
Q Consensus 692 NL~--~Ad~VIi~D~dW 706 (1272)
|++ .+..|||.-.|+
T Consensus 709 D~p~~~~~~viI~kLPF 725 (820)
T PRK07246 709 DFVQADRMIEVITRLPF 725 (820)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 997 356677776554
No 152
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=2.2e-06 Score=110.48 Aligned_cols=74 Identities=20% Similarity=0.212 Sum_probs=59.0
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-C-CCcEEEEecC-ccHHHHHHHHHH
Q 000811 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-R-ISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 281 ~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~-~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
++-..+||.|.+.+..+...+..+++++|-.+||+|||+.+|+........ + ..++++.+.+ +.+.|-.+|+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 333457999999999999999999999999999999999987776655442 2 2366666665 667899999988
No 153
>PF06465 DUF1087: Domain of Unknown Function (DUF1087); InterPro: IPR009463 This is a group of proteins of unknown function.
Probab=98.59 E-value=5.9e-08 Score=83.28 Aligned_cols=43 Identities=58% Similarity=0.886 Sum_probs=38.5
Q ss_pred CccchhhHHHHHHHHHHHHHHHHhhhcCCCCCCcccccccchh
Q 000811 862 NSERSSYWEELLKDRYEVHKVEEFNALGKGKRSRKQMVSVEED 904 (1272)
Q Consensus 862 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 904 (1272)
+..+++||++||+++|++.++++...||||||.||||+|...+
T Consensus 20 ~~~~~~yWe~LLr~~ye~~q~e~~~~LGKGKR~RKqV~y~~~~ 62 (66)
T PF06465_consen 20 ESTDPNYWEKLLRHRYEQQQEEEEKALGKGKRSRKQVNYAEED 62 (66)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccc
Confidence 3468999999999999999999999999999999999986543
No 154
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.57 E-value=1.4e-05 Score=105.57 Aligned_cols=90 Identities=14% Similarity=0.191 Sum_probs=65.7
Q ss_pred CCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH--HHHH---HHH
Q 000811 280 FLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN--WERE---FAT 354 (1272)
Q Consensus 280 ~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q--W~~E---~~~ 354 (1272)
.+++.+.||-|.+-++.+...+..+...++-..||+|||+..+.-+........+|++|.+++..|.+ +.++ +.+
T Consensus 252 ~~~~~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~ 331 (928)
T PRK08074 252 AMPKYEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQK 331 (928)
T ss_pred hCCCCcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHH
Confidence 45677999999999988888888888888888999999998765554444434468999999766644 3444 344
Q ss_pred HCC-CCeEEEEEcChh
Q 000811 355 WAP-QMNVVMYVGTSQ 369 (1272)
Q Consensus 355 ~~p-~~~vv~~~G~~~ 369 (1272)
.+| .+++++..|...
T Consensus 332 ~~~~~~~~~~lKGr~n 347 (928)
T PRK08074 332 IFPFPVEAALLKGRSH 347 (928)
T ss_pred HcCCCceEEEEEcccc
Confidence 443 577887777543
No 155
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.52 E-value=2.7e-08 Score=118.45 Aligned_cols=49 Identities=45% Similarity=1.065 Sum_probs=44.0
Q ss_pred cccccccCCCCce---eecCCCCCccccCcCCCCC--CCCCCCCCcCCcCCCCC
Q 000811 51 DDSCQACGESENL---MSCDTCTYAYHAKCLVPPL--KAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 51 ~~~C~~C~~~~~l---l~Cd~C~~~~H~~Cl~P~l--~~~p~~~W~C~~C~~~~ 99 (1272)
+++|..|++.|.. +|||+|+++||+.||.||+ ..+|.|.|+|++|....
T Consensus 253 ~~fCsaCn~~~~F~~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~k~ 306 (613)
T KOG4299|consen 253 EDFCSACNGSGLFNDIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKIKS 306 (613)
T ss_pred HHHHHHhCCccccccceeecCCchHHHHhhcCCCCCcccCCCCccccCCCeeee
Confidence 4599999999876 9999999999999999994 67899999999998643
No 156
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.49 E-value=9.8e-06 Score=104.08 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=77.3
Q ss_pred HHHcCceEEEEecchhhHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccC--C
Q 000811 620 LKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--A 696 (1272)
Q Consensus 620 l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~--A 696 (1272)
+...+.++|||...-.++..+.++|...... .....|..+ +..+++.|.+...+ .|++.+....+|||++. +
T Consensus 475 ~~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~--~~lv~~gsf~EGVD~~g~~l 549 (654)
T COG1199 475 LKASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG--LILVGGGSFWEGVDFPGDAL 549 (654)
T ss_pred HhhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC--eEEEeeccccCcccCCCCCe
Confidence 3444558999999999999999999876653 444455544 34899999887665 48999999999999985 5
Q ss_pred CEEEEecCCCC-hhh-----------------------------HHHHHHhhhhcCCCCceE
Q 000811 697 DTVIIYDSDWN-PHA-----------------------------DLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 697 d~VIi~D~dWN-p~~-----------------------------~~Qa~gRahRiGQ~k~V~ 728 (1272)
..|||.-.||= |.. ..|++||+.|--+.+-|.
T Consensus 550 ~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 550 RLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 88999877773 221 369999999955555444
No 157
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.48 E-value=1.1e-05 Score=97.39 Aligned_cols=253 Identities=18% Similarity=0.232 Sum_probs=139.4
Q ss_pred CCCcccccccCCCCCCCCCCCcHHHHHHHHHHHHhhcC------CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEE
Q 000811 266 KKPKEFQQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSK------QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1272)
Q Consensus 266 ~~~~~~~~~~~~P~~~~g~~Lr~yQlegv~wL~~~~~~------~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIV 339 (1272)
+.++.+.---..|. +..+-|.-.|+++|.+....+.. .-|.+|.|..|.||-.+...+|..-+-.+.++.|.+
T Consensus 246 V~ppdi~YqlalP~-i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~ 324 (1300)
T KOG1513|consen 246 VEPPDITYQLALPS-IDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWF 324 (1300)
T ss_pred cCCCCceEEEeccc-CcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEE
Confidence 33444443344565 56688999999999988655432 335789999999987766555554444455555555
Q ss_pred -ecCccHHHHHHHHHHHC-CCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHH
Q 000811 340 -APLSTLRNWEREFATWA-PQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMI 417 (1272)
Q Consensus 340 -vP~sll~qW~~E~~~~~-p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l 417 (1272)
|...+-..-++.+.... +.+.|..+..- +.++ ++.......+-.|++.||..+
T Consensus 325 SVSsDLKfDAERDL~DigA~~I~V~alnK~------------------------KYak-Iss~en~n~krGViFaTYtaL 379 (1300)
T KOG1513|consen 325 SVSSDLKFDAERDLRDIGATGIAVHALNKF------------------------KYAK-ISSKENTNTKRGVIFATYTAL 379 (1300)
T ss_pred EeccccccchhhchhhcCCCCccceehhhc------------------------cccc-ccccccCCccceeEEEeeHhh
Confidence 44555556666666543 23322221110 0000 011112335667999999998
Q ss_pred Hhhhh--------ccCC-Ccc------eeEEeccccccCC-------cchHHHHHHHhc----ccccEEEEeccCCCCCH
Q 000811 418 NLDSA--------SLKP-IKW------QCMIVDEGHRLKN-------KDSKLFSSLKQY----STRHRVLLTGTPLQNNL 471 (1272)
Q Consensus 418 ~~d~~--------~L~~-~~w------~~vIvDEaHrlKn-------~~S~~~~~l~~l----~~~~rllLTGTPlqN~~ 471 (1272)
..+.. .|+. +.| .+||+||||+.|| ..++..+.+..+ ...+.+..|||--.
T Consensus 380 IGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAs--- 456 (1300)
T KOG1513|consen 380 IGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGAS--- 456 (1300)
T ss_pred hhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCC---
Confidence 65422 2211 234 4899999999999 345555655554 45577888988532
Q ss_pred HHHHHHHHhhcCCC------CCChHHHHHHHhhh--hhHHHHHHHHHHhhhhhHHHHHhhHhhcCCCceeEEEeecCCHH
Q 000811 472 DELFMLMHFLDAGK------FGSLEEFQEEFKDI--NQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSK 543 (1272)
Q Consensus 472 ~EL~~Ll~fL~p~~------f~~~~~F~~~f~~~--~~~~~i~~L~~~L~p~~lRR~k~dv~~~LP~k~e~~v~v~ls~~ 543 (1272)
|--++..+...+. |+++.+|......- ...+.+. .--.++...+.|-. .+-.....+-.|+|++.
T Consensus 457 -EPrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVA-MDMK~rGmYiARQL-----SFkgVsFrieEv~ls~e 529 (1300)
T KOG1513|consen 457 -EPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVA-MDMKLRGMYIARQL-----SFKGVSFRIEEVPLSKE 529 (1300)
T ss_pred -CcchhhhhhhhccccCCCcCccHHHHHHHHHhcCCceeeeee-hhhhhhhhhhhhhc-----cccCceEEEEecccCHH
Confidence 2223333333333 55666665443211 0011111 11112222222211 23344567888999999
Q ss_pred HHHHHHHHHHH
Q 000811 544 QKEYYKAILTR 554 (1272)
Q Consensus 544 Q~~~Y~~il~~ 554 (1272)
=++.|.....-
T Consensus 530 F~k~Yn~a~~L 540 (1300)
T KOG1513|consen 530 FRKVYNRAAEL 540 (1300)
T ss_pred HHHHHHHHHHH
Confidence 99999865443
No 158
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.44 E-value=9.1e-07 Score=106.53 Aligned_cols=152 Identities=20% Similarity=0.315 Sum_probs=101.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH-HHHHHHHhhCCCCcEEEEecCccHH-HHHHHHHHHCCCCeE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS-IAFLASLFGERISPHLVVAPLSTLR-NWEREFATWAPQMNV 361 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa-ia~l~~l~~~~~~p~LIVvP~sll~-qW~~E~~~~~p~~~v 361 (1272)
.+|-|+|..++.-+ .++..+++..-|..|||+.| .|++..|+... +++.-.|-..|+ |=.+|+..=+.+ |
T Consensus 128 F~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ--RVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ--RVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred cccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHhcC--eEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 57999999997655 89999999999999999997 55556665543 788888965554 445676553322 2
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHh----hhhccCCCcceeEEeccc
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINL----DSASLKPIKWQCMIVDEG 437 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~----d~~~L~~~~w~~vIvDEa 437 (1272)
-..+|+-. -.+....+|+|-++++. .....+.+.| ||+||.
T Consensus 200 GLMTGDVT---------------------------------InP~ASCLVMTTEILRsMLYRGSEvmrEVaW--VIFDEI 244 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------INPDASCLVMTTEILRSMLYRGSEVMREVAW--VIFDEI 244 (1041)
T ss_pred ceeeccee---------------------------------eCCCCceeeeHHHHHHHHHhccchHhheeee--EEeeee
Confidence 33344321 01345578888888765 3456677777 999999
Q ss_pred cccCCcchH-HHH-HHHhcc-cccEEEEeccCCCCCHHHHHHHHHhhcCCCCCChHHHHHHHhh
Q 000811 438 HRLKNKDSK-LFS-SLKQYS-TRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKD 498 (1272)
Q Consensus 438 HrlKn~~S~-~~~-~l~~l~-~~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~~~~F~~~f~~ 498 (1272)
|.++....- .+. .+.-+. .-+-+.||||= ++..+|.+|...
T Consensus 245 HYMRDkERGVVWEETIIllP~~vr~VFLSATi--------------------PNA~qFAeWI~~ 288 (1041)
T KOG0948|consen 245 HYMRDKERGVVWEETIILLPDNVRFVFLSATI--------------------PNARQFAEWICH 288 (1041)
T ss_pred hhccccccceeeeeeEEeccccceEEEEeccC--------------------CCHHHHHHHHHH
Confidence 999865421 111 112222 33568899993 567788888653
No 159
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.43 E-value=5.2e-06 Score=88.79 Aligned_cols=45 Identities=29% Similarity=0.440 Sum_probs=43.1
Q ss_pred EeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCC
Q 000811 681 LLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTN 725 (1272)
Q Consensus 681 LlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k 725 (1272)
|++|...|.|+++...+.||.||.+-.+..|+.+.+||+|.|.+.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 789999999999999999999999999999999999999999775
No 160
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.41 E-value=4.3e-05 Score=95.48 Aligned_cols=79 Identities=15% Similarity=0.096 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHH-HhhCCCCcEEEEecC-ccHHHHHHHHHHHC-----CCCeEE
Q 000811 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLAS-LFGERISPHLVVAPL-STLRNWEREFATWA-----PQMNVV 362 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~-l~~~~~~p~LIVvP~-sll~qW~~E~~~~~-----p~~~vv 362 (1272)
|.+-+.++...+..+...++-..+|+|||+..+.-+.. +......++||++|+ .+..|+.+++..+. ..++++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 77777888888888888889999999999987655543 332234699999996 55578888876554 256777
Q ss_pred EEEcCh
Q 000811 363 MYVGTS 368 (1272)
Q Consensus 363 ~~~G~~ 368 (1272)
+..|..
T Consensus 82 ~lkGr~ 87 (636)
T TIGR03117 82 FFPGSQ 87 (636)
T ss_pred EEECCc
Confidence 777644
No 161
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.34 E-value=5.4e-06 Score=106.09 Aligned_cols=143 Identities=19% Similarity=0.315 Sum_probs=90.7
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEecCccHH-HHHH---------HHHHHCCC--CeEEEEEcChh--
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPLSTLR-NWER---------EFATWAPQ--MNVVMYVGTSQ-- 369 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP~sll~-qW~~---------E~~~~~p~--~~vv~~~G~~~-- 369 (1272)
.+..+.++||+|||.+++..+.+|... +...+|||||...+. .... -|...+++ +...+|...+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 467899999999999999999999775 556999999975542 2222 22222222 34444543321
Q ss_pred -HH----HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh--c------cCC--Ccce----
Q 000811 370 -AR----NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA--S------LKP--IKWQ---- 430 (1272)
Q Consensus 370 -~r----~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~--~------L~~--~~w~---- 430 (1272)
.| ..++.+- . .........+|+|+|-+++.++.. . +.. .+|+
T Consensus 140 ~gr~~~~~~i~~Fa---~----------------~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~ 200 (986)
T PRK15483 140 SGRKNFPAQLSNFV---K----------------ASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAA 200 (986)
T ss_pred cccccChHHHHHHH---h----------------ccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHh
Confidence 11 1222210 0 000112356899999999876421 1 111 3443
Q ss_pred ---eEEeccccccCCcchHHHHHHHhcccccEEEEeccCC
Q 000811 431 ---CMIVDEGHRLKNKDSKLFSSLKQYSTRHRVLLTGTPL 467 (1272)
Q Consensus 431 ---~vIvDEaHrlKn~~S~~~~~l~~l~~~~rllLTGTPl 467 (1272)
+||+||+|++.. ..+.+.++..++..+.|.-|||--
T Consensus 201 ~~PivIiDEPh~~~~-~~k~~~~i~~lnpl~~lrysAT~~ 239 (986)
T PRK15483 201 TRPVVIIDEPHRFPR-DNKFYQAIEALKPQMIIRFGATFP 239 (986)
T ss_pred CCCEEEEECCCCCCc-chHHHHHHHhcCcccEEEEeeecC
Confidence 799999999965 345678899999999999999963
No 162
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=98.32 E-value=0.00014 Score=90.45 Aligned_cols=161 Identities=19% Similarity=0.197 Sum_probs=106.3
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEecC-ccHHHHHHHHH-HH-CCCCeE
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAPL-STLRNWEREFA-TW-APQMNV 361 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP~-sll~qW~~E~~-~~-~p~~~v 361 (1272)
.-.+|.+-+. ....+..+++...+-.|||...--++...++. ..+-++.|+|. +++.|-..++. +| ++.+..
T Consensus 512 Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 512 PDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred CcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3347877554 44788999999999999999988887776654 45689999995 56666666654 33 232222
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhh----ccCC-CcceeEEecc
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSA----SLKP-IKWQCMIVDE 436 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~----~L~~-~~w~~vIvDE 436 (1272)
.+ .-.-...++|. .....++|+||-++.+..-.- ...- -+..+||+||
T Consensus 588 g~----sl~g~ltqEYs-----------------------inp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDE 640 (1330)
T KOG0949|consen 588 GV----SLLGDLTQEYS-----------------------INPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDE 640 (1330)
T ss_pred ch----hhHhhhhHHhc-----------------------CCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEech
Confidence 11 11111222321 123477899999988743211 1111 1347999999
Q ss_pred ccccCCc-chHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHH
Q 000811 437 GHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1272)
Q Consensus 437 aHrlKn~-~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~ 479 (1272)
+|.+.|. .+.++..+..+...-.|+|||| ++|+..+..-++
T Consensus 641 VH~iG~~ed~l~~Eqll~li~CP~L~LSAT--igN~~l~qkWln 682 (1330)
T KOG0949|consen 641 VHLIGNEEDGLLWEQLLLLIPCPFLVLSAT--IGNPNLFQKWLN 682 (1330)
T ss_pred hhhccccccchHHHHHHHhcCCCeeEEecc--cCCHHHHHHHHH
Confidence 9999885 4667777777777778999999 577777776666
No 163
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.28 E-value=8.4e-05 Score=95.44 Aligned_cols=92 Identities=15% Similarity=0.234 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcc-CCCceEEEeeccccc
Q 000811 611 QLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAK-NSSRFCFLLSTRAGG 688 (1272)
Q Consensus 611 ~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~Rq~~I~~Fn~~-~s~~~vfLlSTragg 688 (1272)
..+.+.|..+...+.++|||.....+++.+.+.|... ++. ..+.|. ..|.++++.|.+. ..+.-.+|++|.+..
T Consensus 521 ~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 521 AEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 3444445444445556888888888888888888643 333 344553 3577888777642 001113688889999
Q ss_pred cccCccC--CCEEEEecCCC
Q 000811 689 LGINLAT--ADTVIIYDSDW 706 (1272)
Q Consensus 689 ~GINL~~--Ad~VIi~D~dW 706 (1272)
+|||++. +..|||.-.|+
T Consensus 597 EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 597 EGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred ccccCCCCceEEEEEEcCCC
Confidence 9999984 78999987776
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.27 E-value=5e-05 Score=94.90 Aligned_cols=114 Identities=10% Similarity=0.284 Sum_probs=82.9
Q ss_pred hhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccc
Q 000811 607 SGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA 686 (1272)
Q Consensus 607 S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTra 686 (1272)
+....+...|+..| ..|++|.|||....+.+++++++...+.++..++|..+..+. +.+ ..+-+++-|.+
T Consensus 266 ~~~~tF~~~L~~~L-~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W-----~~~~VviYT~~ 335 (824)
T PF02399_consen 266 NDETTFFSELLARL-NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESW-----KKYDVVIYTPV 335 (824)
T ss_pred cchhhHHHHHHHHH-hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----ccc-----cceeEEEEece
Confidence 34445666677666 469999999999999999999999999999999887765522 222 33457888888
Q ss_pred cccccCccC--CCEEEEe--cCCCChhh--HHHHHHhhhhcCCCCceEEEE
Q 000811 687 GGLGINLAT--ADTVIIY--DSDWNPHA--DLQAMARAHRLGQTNKVMIFR 731 (1272)
Q Consensus 687 gg~GINL~~--Ad~VIi~--D~dWNp~~--~~Qa~gRahRiGQ~k~V~Vyr 731 (1272)
...|+++-. .|.|..| .....|.. ..|.+||+-.+... .+.||.
T Consensus 336 itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~~-ei~v~~ 385 (824)
T PF02399_consen 336 ITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLDN-EIYVYI 385 (824)
T ss_pred EEEEeccchhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhccC-eEEEEE
Confidence 888988864 4666666 33344554 69999999887744 455553
No 165
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=98.25 E-value=5.3e-07 Score=76.50 Aligned_cols=49 Identities=41% Similarity=0.650 Sum_probs=41.6
Q ss_pred chhhhhhhccCC--CcceEEeecccccccccccccccccccchHHHHHHHH
Q 000811 193 TVDRILACRGED--DEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1272)
Q Consensus 193 ~veRIi~~r~~~--~~~eyLVKWkgL~Y~~~tWE~~~~~~~~~~~i~~f~~ 241 (1272)
.|++||++|... +..+|||||+|++|++||||....+......+++|..
T Consensus 4 ~ve~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDCKELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCchHHHHHHHHh
Confidence 359999999766 7889999999999999999998877655677888763
No 166
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.17 E-value=0.00014 Score=88.31 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=78.6
Q ss_pred eEEEEecchhhHHHHHHHHHh----CCCc----EEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCC
Q 000811 626 RVLIYSQFQHMLDLLEDYLTF----KKWQ----YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATAD 697 (1272)
Q Consensus 626 KVLIFsq~~~~ldiL~~~L~~----~g~~----~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad 697 (1272)
-+|||=.-....+.+.+.|.. .+-. +.-+.|..+.++...+ |...+.+...+++||..+...|++...-
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI~ 336 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGIR 336 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecceE
Confidence 688887777666555555543 2222 4568899998765444 7666656667899999999999999877
Q ss_pred EEEEecC------CCCh-----------hhHHHHHHhhhhcCCCCceEEEEEeeCCCH
Q 000811 698 TVIIYDS------DWNP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSI 738 (1272)
Q Consensus 698 ~VIi~D~------dWNp-----------~~~~Qa~gRahRiGQ~k~V~Vyrlit~~Tv 738 (1272)
.|| |+ -||| -.-.||..|++|-|.+.+..+|||+++.-+
T Consensus 337 YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 337 YVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 664 32 2344 245688888888899999999999998765
No 167
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.17 E-value=6.5e-07 Score=107.21 Aligned_cols=47 Identities=34% Similarity=0.923 Sum_probs=42.3
Q ss_pred cccccccCCCCc---eeecCCCCCc-cccCcCCCCCCCCCCCCCcCCcCCC
Q 000811 51 DDSCQACGESEN---LMSCDTCTYA-YHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 51 ~~~C~~C~~~~~---ll~Cd~C~~~-~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1272)
..-|.+|...+. ||+||.|..+ ||.+||+|+|-.+|-+.|+|+.|..
T Consensus 215 ~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~d 265 (1134)
T KOG0825|consen 215 EVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSL 265 (1134)
T ss_pred cccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcchh
Confidence 456999987653 9999999999 9999999999999999999999985
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.12 E-value=1.5e-05 Score=80.20 Aligned_cols=130 Identities=18% Similarity=0.152 Sum_probs=71.8
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcC
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYF 381 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~ 381 (1272)
.++.-.+|-.-+|.|||-..+.-+..-.-....++||++|+-++ .+|+.+...+..+ -++-..-.+
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvv---a~em~~aL~~~~~-~~~t~~~~~---------- 67 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVV---AEEMYEALKGLPV-RFHTNARMR---------- 67 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHH---HHHHHHHTTTSSE-EEESTTSS-----------
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHH---HHHHHHHHhcCCc-ccCceeeec----------
Confidence 45666788899999999987654433222233599999998776 3455555545542 222111100
Q ss_pred CCCchhhhccccCccccccccccccccEEEecHHHHHhh-hhccCCCcceeEEeccccccCCcchHHHHH-HHhcc-c--
Q 000811 382 PKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD-SASLKPIKWQCMIVDEGHRLKNKDSKLFSS-LKQYS-T-- 456 (1272)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d-~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~-l~~l~-~-- 456 (1272)
.....--|-+++|.++... .......+|++||+||||-. ...|..... +..+. .
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~ 126 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGE 126 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS
T ss_pred --------------------cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccC
Confidence 0112334777888887553 22344568999999999963 444443333 23332 1
Q ss_pred ccEEEEeccC
Q 000811 457 RHRVLLTGTP 466 (1272)
Q Consensus 457 ~~rllLTGTP 466 (1272)
...+++||||
T Consensus 127 ~~~i~mTATP 136 (148)
T PF07652_consen 127 AKVIFMTATP 136 (148)
T ss_dssp -EEEEEESS-
T ss_pred eeEEEEeCCC
Confidence 2578999999
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.10 E-value=0.00045 Score=87.15 Aligned_cols=121 Identities=21% Similarity=0.199 Sum_probs=92.1
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR 685 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr 685 (1272)
...|+..+.+-+....+.|.+|||-+..+..-+.|...|...|++...++-.-. .|++-|-.+ ++..+ .+-++|.
T Consensus 411 ~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~-AG~~g--aVTiATN 485 (822)
T COG0653 411 EEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQ-AGQPG--AVTIATN 485 (822)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhh-cCCCC--ccccccc
Confidence 457899999999999999999999999999999999999999999988887764 444434333 33334 3578999
Q ss_pred ccccccCcc-CCC----------EEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEE
Q 000811 686 AGGLGINLA-TAD----------TVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRL 732 (1272)
Q Consensus 686 agg~GINL~-~Ad----------~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrl 732 (1272)
-+|+|-++. ..+ +||=-.-.=+-..+-|-.||++|.| ..-...|+|
T Consensus 486 MAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG-DpG~S~F~l 542 (822)
T COG0653 486 MAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG-DPGSSRFYL 542 (822)
T ss_pred cccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC-Ccchhhhhh
Confidence 999999986 233 4555555556677789999999999 333344443
No 170
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.09 E-value=0.00028 Score=90.16 Aligned_cols=129 Identities=19% Similarity=0.263 Sum_probs=90.1
Q ss_pred hHHHHHHHHHHHHHHc--CceEEEEecchhhHHHHHHHHH----hCC---CcEEEEeCCCCHHHHHHHHHHHhccCCCce
Q 000811 608 GKLQLLDKMMVKLKEQ--GHRVLIYSQFQHMLDLLEDYLT----FKK---WQYERIDGKVGGAERQIRIDRFNAKNSSRF 678 (1272)
Q Consensus 608 ~Kl~~L~klL~~l~~~--g~KVLIFsq~~~~ldiL~~~L~----~~g---~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~ 678 (1272)
-...++..++..+.+. ...+|||-.-..-+..+.+.|. ..+ +-...++++++..+.+.+ |+.+..+..
T Consensus 395 id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~R 471 (924)
T KOG0920|consen 395 IDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTR 471 (924)
T ss_pred ccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcc
Confidence 3556666666666554 3589999988776666666664 222 567788999998776655 888888877
Q ss_pred EEEeeccccccccCccCCCEEEE--------ecCCC----------ChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHH
Q 000811 679 CFLLSTRAGGLGINLATADTVII--------YDSDW----------NPHADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1272)
Q Consensus 679 vfLlSTragg~GINL~~Ad~VIi--------~D~dW----------Np~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE 740 (1272)
-++++|..+..+|++..+-.||= ||+.- +-++-.||.|||+| ...-.+|+|+++.-.+.
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRSRYEK 548 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechhhhhh
Confidence 79999999999999998766653 44432 22334566666655 67778999999875544
Q ss_pred HH
Q 000811 741 RM 742 (1272)
Q Consensus 741 ~I 742 (1272)
.+
T Consensus 549 ~~ 550 (924)
T KOG0920|consen 549 LM 550 (924)
T ss_pred cc
Confidence 33
No 171
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.07 E-value=2.5e-05 Score=89.80 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHH-HHhhCCC----CcEEEEecCcc-HHHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~-~l~~~~~----~p~LIVvP~sl-l~qW~~E~~~~ 355 (1272)
.+.||.|++-+.-+...+..+..+|+-.++|+|||+..+..+. ++..... .++++++++.. +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888889999999999999999999876664 3333332 27888887643 34445556554
No 172
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.07 E-value=2.5e-05 Score=89.80 Aligned_cols=72 Identities=17% Similarity=0.096 Sum_probs=53.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHH-HHhhCCC----CcEEEEecCcc-HHHHHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLA-SLFGERI----SPHLVVAPLST-LRNWEREFATW 355 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~-~l~~~~~----~p~LIVvP~sl-l~qW~~E~~~~ 355 (1272)
.+.||.|++-+.-+...+..+..+|+-.++|+|||+..+..+. ++..... .++++++++.. +.+=..++++.
T Consensus 7 y~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 7 YEPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 4569999999998888889999999999999999999876664 3333332 27888887643 34445556554
No 173
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.04 E-value=0.00014 Score=87.46 Aligned_cols=94 Identities=18% Similarity=0.214 Sum_probs=65.0
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEec----CCCChh-----------hHH
Q 000811 648 KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYD----SDWNPH-----------ADL 712 (1272)
Q Consensus 648 g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D----~dWNp~-----------~~~ 712 (1272)
++.+.-|....+..... .-|+....+...++++|..+...|+++..-.||=.. .-+||. .-.
T Consensus 597 ~L~vlpiYSQLp~dlQ~---kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 597 DLAVLPIYSQLPADLQA---KIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred ceEEEeehhhCchhhhh---hhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 44555556666554433 337755666666899999999999999888776421 123433 334
Q ss_pred HHHHhhhhcCCCCceEEEEEeeCCCHHHHHHH
Q 000811 713 QAMARAHRLGQTNKVMIFRLITRGSIEERMMQ 744 (1272)
Q Consensus 713 Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~~ 744 (1272)
+|-.|++|.|.+.+-..||++|+.++...|+.
T Consensus 674 nA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~ 705 (1042)
T KOG0924|consen 674 NADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP 705 (1042)
T ss_pred cchhhccccCCCCCcceeeehhhhHHHhhccc
Confidence 56667777777888999999999998888764
No 174
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=98.03 E-value=2.4e-06 Score=72.34 Aligned_cols=48 Identities=38% Similarity=0.644 Sum_probs=41.9
Q ss_pred hhhhhhhc-cCCCcceEEeecccccccccccccccccccchHHHHHHHH
Q 000811 194 VDRILACR-GEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIK 241 (1272)
Q Consensus 194 veRIi~~r-~~~~~~eyLVKWkgL~Y~~~tWE~~~~~~~~~~~i~~f~~ 241 (1272)
|++|+++| ...+..+|||||+|++|.++||+....+..+...+.+|..
T Consensus 4 v~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~~~~~v~~~~~ 52 (55)
T smart00298 4 VEKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLNCSKKLDNYKK 52 (55)
T ss_pred hheeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHHHHHHHHHHHH
Confidence 89999999 7778889999999999999999998876556777888875
No 175
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.02 E-value=0.00014 Score=91.14 Aligned_cols=153 Identities=19% Similarity=0.192 Sum_probs=88.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHH-HHHHhhCCCCcEEEEecCccHHH-HHHHHHHHC--CCCe
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAF-LASLFGERISPHLVVAPLSTLRN-WEREFATWA--PQMN 360 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~-l~~l~~~~~~p~LIVvP~sll~q-W~~E~~~~~--p~~~ 360 (1272)
.|+++|.+.+.- .....+++.|.+.+++.|||+.+=.+ +..++. ..+..|.+.|--.+.+ =..++..+. -+++
T Consensus 223 ~~fewq~ecls~--~~~~e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSL--PRLLERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcc--hhhhcccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 577888887642 22247899999999999999987333 333332 2346788888544433 233333333 1344
Q ss_pred EEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCC----CcceeEEecc
Q 000811 361 VVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKP----IKWQCMIVDE 436 (1272)
Q Consensus 361 vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~----~~w~~vIvDE 436 (1272)
|-.|.|.-.. . .....-+|.|+|-|........|.. ..-.+|||||
T Consensus 300 ve~y~g~~~p-------------~-----------------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdE 349 (1008)
T KOG0950|consen 300 VEEYAGRFPP-------------E-----------------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDE 349 (1008)
T ss_pred chhhcccCCC-------------C-----------------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEee
Confidence 4444433110 0 0123456899999988776555422 2346899999
Q ss_pred ccccCC--cchHHHHHHHhc----ccc--cEEEEeccCCCCC
Q 000811 437 GHRLKN--KDSKLFSSLKQY----STR--HRVLLTGTPLQNN 470 (1272)
Q Consensus 437 aHrlKn--~~S~~~~~l~~l----~~~--~rllLTGTPlqN~ 470 (1272)
-|-+.. .+..+-..|..+ ... ..++||||-..|.
T Consensus 350 lhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~ 391 (1008)
T KOG0950|consen 350 LHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNS 391 (1008)
T ss_pred eeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChH
Confidence 999843 333333333332 122 3699999964333
No 176
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.00 E-value=1.6e-06 Score=72.40 Aligned_cols=44 Identities=43% Similarity=1.192 Sum_probs=37.4
Q ss_pred cccccCC---CCceeecCCCCCccccCcCCCCCC--CCCCCCCcCCcCC
Q 000811 53 SCQACGE---SENLMSCDTCTYAYHAKCLVPPLK--APPSGSWRCPECV 96 (1272)
Q Consensus 53 ~C~~C~~---~~~ll~Cd~C~~~~H~~Cl~P~l~--~~p~~~W~C~~C~ 96 (1272)
+|.+|+. .+.+|.|+.|.+.||..|+.|+.. ..+.+.|+|+.|.
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 5888887 456999999999999999999977 4455699999996
No 177
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=97.95 E-value=2.1e-05 Score=89.60 Aligned_cols=96 Identities=17% Similarity=0.250 Sum_probs=86.5
Q ss_pred CceEEEEecchhhHHHHHHHHHhC---CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000811 624 GHRVLIYSQFQHMLDLLEDYLTFK---KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1272)
Q Consensus 624 g~KVLIFsq~~~~ldiL~~~L~~~---g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI 700 (1272)
-.|.||||....-.|-|++++..+ .|+++.++|...+.+|.+-++.|... .+.|||+|.+++.||+++..-.+|
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~---dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF---DVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc---CeEEEEEehhhhccccccCCceEE
Confidence 468999999999999999999875 46889999999999999999999763 345999999999999999999999
Q ss_pred EecCCCChhhHHHHHHhhhhcC
Q 000811 701 IYDSDWNPHADLQAMARAHRLG 722 (1272)
Q Consensus 701 i~D~dWNp~~~~Qa~gRahRiG 722 (1272)
....+-.-++|.++|||++|.-
T Consensus 582 nvtlpd~k~nyvhrigrvgrae 603 (725)
T KOG0349|consen 582 NVTLPDDKTNYVHRIGRVGRAE 603 (725)
T ss_pred EEecCcccchhhhhhhccchhh
Confidence 9999999999999999888753
No 178
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.95 E-value=1.8e-05 Score=88.79 Aligned_cols=90 Identities=19% Similarity=0.251 Sum_probs=71.0
Q ss_pred HHHHHHhccCCCceEEEeeccccccccCccCC--------CEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCC
Q 000811 665 IRIDRFNAKNSSRFCFLLSTRAGGLGINLATA--------DTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRG 736 (1272)
Q Consensus 665 ~~I~~Fn~~~s~~~vfLlSTragg~GINL~~A--------d~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~ 736 (1272)
...+.|+++... ++|-++||+.||+|++- -+-|+++++|+....+|.+||+||.||.....+..+++.-
T Consensus 52 ~e~~~F~~g~k~---v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~ 128 (278)
T PF13871_consen 52 AEKQAFMDGEKD---VAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDL 128 (278)
T ss_pred HHHHHHhCCCce---EEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCC
Confidence 456689875432 45557999999999953 2457899999999999999999999999876555566666
Q ss_pred CHHHHHHHHHHHHHHHHHHHh
Q 000811 737 SIEERMMQMTKKKMVLEHLVV 757 (1272)
Q Consensus 737 TvEE~I~~~~~~K~~L~~~vi 757 (1272)
..|.+......+|+..-.++.
T Consensus 129 ~gE~Rfas~va~rL~sLgAlt 149 (278)
T PF13871_consen 129 PGERRFASTVARRLESLGALT 149 (278)
T ss_pred HHHHHHHHHHHHHHhhccccc
Confidence 789999999999887655544
No 179
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.94 E-value=0.00047 Score=88.38 Aligned_cols=112 Identities=17% Similarity=0.256 Sum_probs=80.0
Q ss_pred ceEEEEecchhhHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000811 625 HRVLIYSQFQHMLDLLEDYLTF----KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1272)
Q Consensus 625 ~KVLIFsq~~~~ldiL~~~L~~----~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI 700 (1272)
.-+|||-.-....+...+.|.. ....++=+.|..+.++..++ |+....++..+++||+.+..+|++...-.||
T Consensus 260 GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~VI 336 (845)
T COG1643 260 GSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYVI 336 (845)
T ss_pred CCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEEe
Confidence 4688998887777777777765 45778899999998887764 6655555444899999999999999988776
Q ss_pred Ee----cCCCChhhH-----------HHHHHhhhhcCCCCceEEEEEeeCCCHH
Q 000811 701 IY----DSDWNPHAD-----------LQAMARAHRLGQTNKVMIFRLITRGSIE 739 (1272)
Q Consensus 701 i~----D~dWNp~~~-----------~Qa~gRahRiGQ~k~V~Vyrlit~~TvE 739 (1272)
=- .+-|||..- ..|.-|++|-|.+.+-..|||++++..+
T Consensus 337 DsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~ 390 (845)
T COG1643 337 DSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFL 390 (845)
T ss_pred cCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHH
Confidence 21 112333332 2345566666667788999999986555
No 180
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.83 E-value=0.012 Score=76.11 Aligned_cols=189 Identities=12% Similarity=0.141 Sum_probs=103.7
Q ss_pred cHHHHHHHHHHHHhh----cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecC-ccHHHHHHHHHHHC--CC
Q 000811 287 HPYQLEGLNFLRFSW----SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWEREFATWA--PQ 358 (1272)
Q Consensus 287 r~yQlegv~wL~~~~----~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~-sll~qW~~E~~~~~--p~ 358 (1272)
+-+|-.+++.+...- ..|--|+-...||.|||+.=.=++..|.....+ ++-|..=+ ++.-|=-.++.+-. .+
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~~ 489 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLSD 489 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCCc
Confidence 348888887664322 223345667799999999988888888777666 56555554 44456666665533 45
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCC----CCchh--h-h--------ccccCccc----------cccccccccccEEEec
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFP----KNPKK--V-K--------KKKSGQVV----------SESKQDRIKFDVLLTS 413 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~----~~~~~--~-~--------~~~~~~~~----------~~~~~~~~~fdVvItS 413 (1272)
-...|..|+...+......+--.. .+... . . -...+.+. ...........|+|+|
T Consensus 490 ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~T 569 (1110)
T TIGR02562 490 DDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCT 569 (1110)
T ss_pred cceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEec
Confidence 567888899888876532111000 00000 0 0 00000000 0011112334688899
Q ss_pred HHHHHhhhhccC---------CCcceeEEeccccccCCcchHHH-HHHH--hcccccEEEEeccCCCCCHHHHH
Q 000811 414 YEMINLDSASLK---------PIKWQCMIVDEGHRLKNKDSKLF-SSLK--QYSTRHRVLLTGTPLQNNLDELF 475 (1272)
Q Consensus 414 ye~l~~d~~~L~---------~~~w~~vIvDEaHrlKn~~S~~~-~~l~--~l~~~~rllLTGTPlqN~~~EL~ 475 (1272)
.+.+..-...++ .+.=..|||||+|-+-....... ..+. ..-....++||||--..-...|+
T Consensus 570 IDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~ 643 (1110)
T TIGR02562 570 IDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLF 643 (1110)
T ss_pred HHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHH
Confidence 888765543332 22235899999997643333222 2222 12246789999996544444443
No 181
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=97.69 E-value=4.2e-06 Score=71.14 Aligned_cols=54 Identities=33% Similarity=0.706 Sum_probs=38.5
Q ss_pred ccccccccccccCccCCCCcccccchhhhhHHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHHhhhhh
Q 000811 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1272)
Q Consensus 101 ~iekil~~R~rp~~~~~~~~~~~~~~~~~~~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~~f~k~ 173 (1272)
.|++|+++|....... ..+|||||+|++|.||||+|++.|... +| ..++.|.++
T Consensus 2 ~Ve~Il~~r~~~~~~~-------------~~~ylVkW~g~~~~~~tWe~~~~l~~~---~~---~li~~f~~r 55 (55)
T PF00385_consen 2 EVERILDHRVVKGGNK-------------VYEYLVKWKGYPYSENTWEPEENLKNC---FP---ELIEEFEKR 55 (55)
T ss_dssp EEEEEEEEEEETTEES-------------EEEEEEEETTSSGGGEEEEEGGGCSSH---CH---HHHHHHHHH
T ss_pred EEEEEEEEEEeCCCcc-------------cEEEEEEECCCCCCCCeEeeHHHHhHh---hH---HHHHHHhCC
Confidence 3678888874332110 359999999999999999999988643 23 357777653
No 183
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.63 E-value=1.9e-05 Score=66.98 Aligned_cols=51 Identities=35% Similarity=0.686 Sum_probs=37.7
Q ss_pred ccccccccccccCccCCCCcccccchhhhhHHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHHhhhh
Q 000811 101 DIDKILDCEMRPTVAGDSDVSKLGSKQIFVKQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHR 172 (1272)
Q Consensus 101 ~iekil~~R~rp~~~~~~~~~~~~~~~~~~~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~~f~k 172 (1272)
.+++|++.|.... ....+|||||+|++|.||||+|++.|... ..++..|++
T Consensus 4 ~ve~Il~~r~~~~--------------~~~~~y~VkW~g~~~~~~tWe~~~~l~~~-------~~~i~~~~~ 54 (55)
T cd00024 4 EVEKILDHRKKKD--------------GGEYEYLVKWKGYSYSEDTWEPEENLEDC-------KELIDEFKK 54 (55)
T ss_pred eEeeeeeeeecCC--------------CCcEEEEEEECCCCCccCccccHHHhCch-------HHHHHHHHh
Confidence 4678888765432 01249999999999999999999998643 246677764
No 184
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=97.63 E-value=3e-05 Score=78.00 Aligned_cols=29 Identities=45% Similarity=1.039 Sum_probs=26.5
Q ss_pred ccccCcCCCCCCCCCCCCCcCCcCCCCCc
Q 000811 72 AYHAKCLVPPLKAPPSGSWRCPECVSPLN 100 (1272)
Q Consensus 72 ~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~ 100 (1272)
+||+.||.|||..+|.|+|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 59999999999999999999999997543
No 185
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.61 E-value=0.00043 Score=76.31 Aligned_cols=66 Identities=23% Similarity=0.292 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHHhhcCCCc-eEEEeCCCChHHHHHHHHHHHHh-------hCCCCcEEEEecC-ccHHHHHHHHHH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLF-------GERISPHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~-~ILaDemGlGKTiqaia~l~~l~-------~~~~~p~LIVvP~-sll~qW~~E~~~ 354 (1272)
+|.+.|..++..+ ..... +++.-..|+|||.+..+++..+. ....+++||++|. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4778999998755 45555 88899999999988888888773 2344599999995 556777666666
No 186
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.61 E-value=0.00015 Score=85.74 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=78.9
Q ss_pred HcCceEEEEecchhhHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEE
Q 000811 622 EQGHRVLIYSQFQHMLDLLEDYLTFKKWQ-YERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVI 700 (1272)
Q Consensus 622 ~~g~KVLIFsq~~~~ldiL~~~L~~~g~~-~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VI 700 (1272)
..|.-|+-||... .-.+...+..+|.. ++.|.|+.+++.|.+.-..||++.+. +-+|++|.|.|.|+||. .+.||
T Consensus 356 k~GDCvV~FSkk~--I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e-~dvlVAsDAIGMGLNL~-IrRii 431 (700)
T KOG0953|consen 356 KPGDCVVAFSKKD--IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNE-CDVLVASDAIGMGLNLN-IRRII 431 (700)
T ss_pred CCCCeEEEeehhh--HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCc-cceEEeecccccccccc-eeEEE
Confidence 4689999999642 22345555666655 99999999999999999999986655 44899999999999995 67889
Q ss_pred EecCC---------CChhhHHHHHHhhhhcCCC
Q 000811 701 IYDSD---------WNPHADLQAMARAHRLGQT 724 (1272)
Q Consensus 701 i~D~d---------WNp~~~~Qa~gRahRiGQ~ 724 (1272)
|++.- -...+..|.-|||+|.|.+
T Consensus 432 F~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 432 FYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred EeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 98764 3456678999999999876
No 187
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=97.40 E-value=5.3e-05 Score=87.32 Aligned_cols=48 Identities=46% Similarity=1.045 Sum_probs=42.0
Q ss_pred cccccccccCCCCc---eeecCCCCCccccCcCCCCCCCCCCCC----CcCCcCC
Q 000811 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGS----WRCPECV 96 (1272)
Q Consensus 49 ~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~----W~C~~C~ 96 (1272)
.-...|.+|....+ ++.||+|...||+-||.|||..+|... |.|.+|.
T Consensus 542 a~~ysCgiCkks~dQHll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 542 AMNYSCGICKKSTDQHLLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ccceeeeeeccchhhHHHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 44577999998765 899999999999999999999999654 9999994
No 188
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.40 E-value=7.2e-05 Score=80.79 Aligned_cols=51 Identities=25% Similarity=0.643 Sum_probs=42.3
Q ss_pred hcccccccccccccCCC---CceeecCCCCCccccCcCCCCCCCCCCCCCcCC-cCC
Q 000811 44 IVRIDAKDDSCQACGES---ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCP-ECV 96 (1272)
Q Consensus 44 ~~~~~~~~~~C~~C~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~-~C~ 96 (1272)
..+....+..|.+|+++ .++++||.|+++||..|+ .|...|.|.|.|. .|.
T Consensus 307 Y~W~C~~C~lC~IC~~P~~E~E~~FCD~CDRG~HT~CV--GL~~lP~G~WICD~~C~ 361 (381)
T KOG1512|consen 307 YFWKCSSCELCRICLGPVIESEHLFCDVCDRGPHTLCV--GLQDLPRGEWICDMRCR 361 (381)
T ss_pred cchhhcccHhhhccCCcccchheeccccccCCCCcccc--ccccccCccchhhhHHH
Confidence 33444566789999976 459999999999999999 9999999999997 454
No 189
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.39 E-value=0.0058 Score=73.98 Aligned_cols=84 Identities=23% Similarity=0.224 Sum_probs=56.4
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccccccccCccCCCEEEEecCCC------Chh-------------
Q 000811 649 WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDW------NPH------------- 709 (1272)
Q Consensus 649 ~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi~D~dW------Np~------------- 709 (1272)
+-++-|..+.+.+....+ |...+.+...++|+|..+...|++.....|| ||.+ ||.
T Consensus 507 liv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdgI~yVi--DpGf~K~nsynprtGmesL~v~piSK 581 (902)
T KOG0923|consen 507 LIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDGIKYVI--DPGFVKQNSYNPRTGMESLLVTPISK 581 (902)
T ss_pred EEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecCeEEEe--cCccccccCcCCCcCceeEEEeeech
Confidence 346667788887665444 6555555556899999999999988876664 5544 332
Q ss_pred -hHHHHHHhhhhcCCCCceEEEEEeeCCCHHH
Q 000811 710 -ADLQAMARAHRLGQTNKVMIFRLITRGSIEE 740 (1272)
Q Consensus 710 -~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE 740 (1272)
.-.||-|||+|.| +-..|||+|.-+++.
T Consensus 582 AsA~QRaGRAGRtg---PGKCfRLYt~~aY~~ 610 (902)
T KOG0923|consen 582 ASANQRAGRAGRTG---PGKCFRLYTAWAYEH 610 (902)
T ss_pred hhhhhhccccCCCC---CCceEEeechhhhhh
Confidence 2356666666655 666899999766543
No 190
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.38 E-value=0.0022 Score=72.27 Aligned_cols=122 Identities=18% Similarity=0.118 Sum_probs=75.2
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH----HHHHHHHHHHCCC
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL----RNWEREFATWAPQ 358 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll----~qW~~E~~~~~p~ 358 (1272)
|..+++-|+-|+--| ..|-|.-..||=|||+++...+ ++..-...++=||+.+..| .+|...|-+++ +
T Consensus 75 g~~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-G 146 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-G 146 (266)
T ss_dssp S----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T
T ss_pred CCcccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHh-h
Confidence 456778888886444 3455999999999999975433 3333333478888888777 45888888888 7
Q ss_pred CeEEEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh---------hhccCCCcc
Q 000811 359 MNVVMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD---------SASLKPIKW 429 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d---------~~~L~~~~w 429 (1272)
+.+-...+........ .....+|+-+|-..+..| ........+
T Consensus 147 lsv~~~~~~~~~~~r~----------------------------~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~ 198 (266)
T PF07517_consen 147 LSVGIITSDMSSEERR----------------------------EAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGF 198 (266)
T ss_dssp --EEEEETTTEHHHHH----------------------------HHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSS
T ss_pred hccccCccccCHHHHH----------------------------HHHhCcccccccchhhHHHHHHHHhhccchhccCCC
Confidence 7777766654321111 124567888887777543 111223467
Q ss_pred eeEEecccccc
Q 000811 430 QCMIVDEGHRL 440 (1272)
Q Consensus 430 ~~vIvDEaHrl 440 (1272)
+++||||+..+
T Consensus 199 ~~~ivDEvDs~ 209 (266)
T PF07517_consen 199 DFAIVDEVDSI 209 (266)
T ss_dssp SEEEECTHHHH
T ss_pred CEEEEeccceE
Confidence 89999998765
No 191
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=97.38 E-value=8.9e-05 Score=79.69 Aligned_cols=47 Identities=36% Similarity=1.041 Sum_probs=39.1
Q ss_pred ccccccccccCCC--CceeecC--CCCC-ccccCcCCCCCCCCCCCCCcCCcCCC
Q 000811 48 DAKDDSCQACGES--ENLMSCD--TCTY-AYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 48 ~~~~~~C~~C~~~--~~ll~Cd--~C~~-~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1272)
+.+..+| -|++. |.|+-|| .|.+ .||+.|+ .|..+|.|.|+|+.|..
T Consensus 218 e~e~lYC-fCqqvSyGqMVaCDn~nCkrEWFH~~CV--GLk~pPKG~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQVSYGQMVACDNANCKREWFHLECV--GLKEPPKGKWYCPECKK 269 (271)
T ss_pred cCceeEE-EecccccccceecCCCCCchhheecccc--ccCCCCCCcEeCHHhHh
Confidence 4456788 46664 7899999 4985 5999999 99999999999999974
No 192
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=97.35 E-value=8e-05 Score=84.60 Aligned_cols=44 Identities=32% Similarity=0.859 Sum_probs=37.6
Q ss_pred ccccc-cCCCCceeecCC--CC-CccccCcCCCCCCCCCCCCCcCCcCCC
Q 000811 52 DSCQA-CGESENLMSCDT--CT-YAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 52 ~~C~~-C~~~~~ll~Cd~--C~-~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1272)
.+|.. |...|+|+-||. |+ ..||+.|+ .|...|.|.|+||.|..
T Consensus 220 ~yC~Cnqvsyg~Mi~CDn~~C~~eWFH~~CV--GL~~~PkgkWyC~~C~~ 267 (274)
T KOG1973|consen 220 TYCICNQVSYGKMIGCDNPGCPIEWFHFTCV--GLKTKPKGKWYCPRCKA 267 (274)
T ss_pred EEEEecccccccccccCCCCCCcceEEEecc--ccccCCCCcccchhhhh
Confidence 44533 456789999997 99 99999999 99999999999999985
No 193
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.20 E-value=0.0073 Score=70.79 Aligned_cols=62 Identities=29% Similarity=0.365 Sum_probs=47.9
Q ss_pred EEEeeccccccccCccCCCEEEEecCCC------Ch-----------hhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHH
Q 000811 679 CFLLSTRAGGLGINLATADTVIIYDSDW------NP-----------HADLQAMARAHRLGQTNKVMIFRLITRGSIEER 741 (1272)
Q Consensus 679 vfLlSTragg~GINL~~Ad~VIi~D~dW------Np-----------~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~ 741 (1272)
.+++||..+...+.+.+.-.| .||.+ || -.-.||..|++|.|.+++-..|+|+|+..++..
T Consensus 315 kvVvstniaetsltidgiv~V--IDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~e 392 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFV--IDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKE 392 (699)
T ss_pred eEEEEecchheeeeeccEEEE--ecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhc
Confidence 478999999988888775444 45543 44 445799999999999999999999998766544
Q ss_pred H
Q 000811 742 M 742 (1272)
Q Consensus 742 I 742 (1272)
|
T Consensus 393 m 393 (699)
T KOG0925|consen 393 M 393 (699)
T ss_pred C
Confidence 3
No 194
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=97.17 E-value=7.1e-05 Score=83.64 Aligned_cols=24 Identities=54% Similarity=0.991 Sum_probs=22.9
Q ss_pred HHHhhccCCCcccccccChHhHHH
Q 000811 132 QYLVKWKGLSYLHCTWVPEKEFLK 155 (1272)
Q Consensus 132 eYlVKWkg~Sy~h~tWvpe~~L~~ 155 (1272)
||||||+|||+.||||+|+++++.
T Consensus 27 EYlVKWkGWs~kyNTWEPEENILD 50 (369)
T KOG2748|consen 27 EYLVKWKGWSQKYNTWEPEENILD 50 (369)
T ss_pred EEEEEecccccccCccCccccccC
Confidence 999999999999999999999874
No 195
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=97.15 E-value=0.00028 Score=91.18 Aligned_cols=64 Identities=28% Similarity=0.724 Sum_probs=51.2
Q ss_pred cccccccccCCCC-----ceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCcccccccccccccCccCC
Q 000811 49 AKDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGD 117 (1272)
Q Consensus 49 ~~~~~C~~C~~~~-----~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~iekil~~R~rp~~~~~ 117 (1272)
..+..|.+|.++. .+|.||.|..++|+.|.. ...+|+|.|.|..|.-.+... +.|-++|...+.
T Consensus 217 ~~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cyg--i~~ipeg~WlCr~Cl~s~~~~---v~c~~cp~~~gA 285 (1051)
T KOG0955|consen 217 EEDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYG--IPFIPEGQWLCRRCLQSPQRP---VRCLLCPSKGGA 285 (1051)
T ss_pred CCCccceeecccccCCCceEEEcCCCcchhhhhccC--CCCCCCCcEeehhhccCcCcc---cceEeccCCCCc
Confidence 4567899998753 389999999999999995 667899999999999776554 556667776654
No 196
>KOG0954 consensus PHD finger protein [General function prediction only]
Probab=97.05 E-value=0.00024 Score=85.85 Aligned_cols=93 Identities=26% Similarity=0.649 Sum_probs=62.1
Q ss_pred cccccccccCCC-----CceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCcccccccccccccCccCCCCcccc
Q 000811 49 AKDDSCQACGES-----ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKL 123 (1272)
Q Consensus 49 ~~~~~C~~C~~~-----~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~iekil~~R~rp~~~~~~~~~~~ 123 (1272)
+++..|-+|+.+ .+|++||.|.-..|+.|. .+..+|++.|.|..|.-... ...+ ++|..-+.-.....
T Consensus 269 dedviCDvCrspD~e~~neMVfCd~Cn~cVHqaCy--GIle~p~gpWlCr~Calg~~--ppCv---LCPkkGGamK~~~s 341 (893)
T KOG0954|consen 269 DEDVICDVCRSPDSEEANEMVFCDKCNICVHQACY--GILEVPEGPWLCRTCALGIE--PPCV---LCPKKGGAMKPTKS 341 (893)
T ss_pred cccceeceecCCCccccceeEEeccchhHHHHhhh--ceeecCCCCeeehhccccCC--CCee---eccccCCcccccCC
Confidence 356789999876 349999999999999999 89999999999999985311 1111 23333222111111
Q ss_pred cchhhhhHHHHhhccCCCcccc-cccChHhHHHHhhcCh
Q 000811 124 GSKQIFVKQYLVKWKGLSYLHC-TWVPEKEFLKAFKSNP 161 (1272)
Q Consensus 124 ~~~~~~~~eYlVKWkg~Sy~h~-tWvpe~~L~~~~~~~~ 161 (1272)
+. + |.|.-| -|+||..+.+.-++-|
T Consensus 342 gT----------~---wAHvsCALwIPEVsie~~ekmeP 367 (893)
T KOG0954|consen 342 GT----------K---WAHVSCALWIPEVSIECPEKMEP 367 (893)
T ss_pred CC----------e---eeEeeeeeccceeeccCHhhcCc
Confidence 11 3 456666 8999998887644333
No 197
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.95 E-value=0.00037 Score=80.54 Aligned_cols=70 Identities=30% Similarity=0.690 Sum_probs=55.1
Q ss_pred hhcccccccccccccCCCCc-----eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCcccccccccccccCccCC
Q 000811 43 RIVRIDAKDDSCQACGESEN-----LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGD 117 (1272)
Q Consensus 43 ~~~~~~~~~~~C~~C~~~~~-----ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~iekil~~R~rp~~~~~ 117 (1272)
.+..+|.-++.|.+|..... ++.||+|.-+.|..|. .+..+|+|.|+|..|.-... .|..|-++|...+.
T Consensus 185 pi~~~d~~d~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CY--GI~f~peG~WlCrkCi~~~~---~i~~C~fCps~dGa 259 (669)
T COG5141 185 PIEPSDEFDDICTKCTSTHNENSNAIVFCDGCEICVHQSCY--GIQFLPEGFWLCRKCIYGEY---QIRCCSFCPSSDGA 259 (669)
T ss_pred ccCCchhhhhhhHhccccccCCcceEEEecCcchhhhhhcc--cceecCcchhhhhhhccccc---ceeEEEeccCCCCc
Confidence 34444555688999986543 9999999999999999 78889999999999986553 45667788877654
No 198
>PRK10536 hypothetical protein; Provisional
Probab=96.88 E-value=0.0048 Score=68.86 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=83.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh-hCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEE
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~-~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~ 364 (1272)
....|...+.+| ..+..+++.-+.|+|||+.++++..... ......++|+=|.-.. .|.-.|.|
T Consensus 60 ~n~~Q~~~l~al----~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLP------- 124 (262)
T PRK10536 60 RNEAQAHYLKAI----ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLP------- 124 (262)
T ss_pred CCHHHHHHHHHH----hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCC-------
Confidence 556888888877 4456888999999999999999988654 4333455555443322 23333343
Q ss_pred EcChhHHH------HHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 365 VGTSQARN------IIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 365 ~G~~~~r~------~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
|+..++- +....+...... .... .. ....-.|-|.+...++. ..+.-++|||||||
T Consensus 125 -G~~~eK~~p~~~pi~D~L~~~~~~~--~~~~-----~~-----~~~~~~Iei~~l~ymRG-----rtl~~~~vIvDEaq 186 (262)
T PRK10536 125 -GDIAEKFAPYFRPVYDVLVRRLGAS--FMQY-----CL-----RPEIGKVEIAPFAYMRG-----RTFENAVVILDEAQ 186 (262)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChH--HHHH-----HH-----HhccCcEEEecHHHhcC-----CcccCCEEEEechh
Confidence 2222111 000000000000 0000 00 00012245555444432 12234789999999
Q ss_pred ccCCcchHHHHHHHhcccccEEEEeccCCCCC
Q 000811 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNN 470 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~ 470 (1272)
++.- ..+...+..+....+++++|-|-|..
T Consensus 187 n~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 187 NVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred cCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 8754 45556677788889999999997655
No 199
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=96.87 E-value=0.00045 Score=86.92 Aligned_cols=47 Identities=36% Similarity=0.880 Sum_probs=44.9
Q ss_pred cccccccCCCCceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCC
Q 000811 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1272)
++.|.+|.+.|+++||.+|++.||+.|..||+.+.|+..|.|-.|..
T Consensus 344 ddhcrf~~d~~~~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 344 DDHCRFCHDLGDLLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred cccccccCcccceeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 47899999999999999999999999999999999999999999983
No 200
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=96.85 E-value=0.00054 Score=57.89 Aligned_cols=36 Identities=44% Similarity=0.956 Sum_probs=28.6
Q ss_pred HHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHHhhhhh
Q 000811 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQ 173 (1272)
Q Consensus 131 ~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~~f~k~ 173 (1272)
.+|||||+|+++.+|||+|.+.|... ...+.+|.++
T Consensus 18 ~~ylVkW~g~~~~~~tW~~~~~l~~~-------~~~v~~~~~~ 53 (55)
T smart00298 18 LEYLVKWKGYSYSEDTWEPEENLLNC-------SKKLDNYKKK 53 (55)
T ss_pred EEEEEEECCCCCccCceeeHHHHHHH-------HHHHHHHHHh
Confidence 48999999999999999999998631 2356667553
No 201
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=96.75 E-value=0.00066 Score=81.89 Aligned_cols=48 Identities=35% Similarity=0.983 Sum_probs=42.7
Q ss_pred cccccccccCCCCc---eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCC
Q 000811 49 AKDDSCQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1272)
Q Consensus 49 ~~~~~C~~C~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 96 (1272)
..+..|..|+.+|+ ++.|+.|+-+||-+|..|+...++.+.|+|+.|.
T Consensus 66 ~~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~ 116 (694)
T KOG4443|consen 66 PSCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCT 116 (694)
T ss_pred CCceeeeeccccCCcccccccccccccccccccCCccccccCcccccHHHH
Confidence 34567888887665 8999999999999999999999999999999886
No 202
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.75 E-value=0.0051 Score=76.68 Aligned_cols=45 Identities=24% Similarity=0.215 Sum_probs=41.9
Q ss_pred eEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcC
Q 000811 678 FCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLG 722 (1272)
Q Consensus 678 ~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiG 722 (1272)
..|+.|--|+-+|-+=+.+=+++=+-+.-|-..-+|-+||..|+-
T Consensus 484 lRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 484 LRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred ceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 358999999999999999999999999999999999999999975
No 203
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.0038 Score=76.86 Aligned_cols=66 Identities=23% Similarity=0.355 Sum_probs=49.0
Q ss_pred HHHHhccCCCceEEEeeccccccccCccCCCEEEE--------ecC---------CC-ChhhHHHHHHhhhhcCCCCceE
Q 000811 667 IDRFNAKNSSRFCFLLSTRAGGLGINLATADTVII--------YDS---------DW-NPHADLQAMARAHRLGQTNKVM 728 (1272)
Q Consensus 667 I~~Fn~~~s~~~vfLlSTragg~GINL~~Ad~VIi--------~D~---------dW-Np~~~~Qa~gRahRiGQ~k~V~ 728 (1272)
+.-|...+.+...++++|.++...|+++..-.||= ||+ +| +-+.-.||-|||+|+| +-+
T Consensus 620 ~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGH 696 (1172)
T KOG0926|consen 620 MRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGH 696 (1172)
T ss_pred hhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCc
Confidence 34577777777778999999999999999988863 443 34 3444568888888877 556
Q ss_pred EEEEeeC
Q 000811 729 IFRLITR 735 (1272)
Q Consensus 729 Vyrlit~ 735 (1272)
.|||++.
T Consensus 697 cYRLYSS 703 (1172)
T KOG0926|consen 697 CYRLYSS 703 (1172)
T ss_pred eeehhhh
Confidence 7888764
No 204
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=96.71 E-value=0.00036 Score=93.85 Aligned_cols=52 Identities=33% Similarity=0.903 Sum_probs=45.9
Q ss_pred ccccccccccCCCC---ceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCC
Q 000811 48 DAKDDSCQACGESE---NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 48 ~~~~~~C~~C~~~~---~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~ 99 (1272)
......|.+|...+ .++.|+.|..+||+.|+.|.+..+|.++|+||.|....
T Consensus 1105 s~~~~~c~~cr~k~~~~~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~ 1159 (1404)
T KOG1245|consen 1105 SAVNALCKVCRRKKQDEKMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEH 1159 (1404)
T ss_pred ccchhhhhhhhhcccchhhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhh
Confidence 35567899998754 49999999999999999999999999999999999654
No 205
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.66 E-value=0.0087 Score=70.95 Aligned_cols=134 Identities=16% Similarity=0.221 Sum_probs=99.8
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh----CCC----cEEEEeCCCCHHHHHHHHHHHhccCCC
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF----KKW----QYERIDGKVGGAERQIRIDRFNAKNSS 676 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~----~g~----~~~ridG~~~~~~Rq~~I~~Fn~~~s~ 676 (1272)
..+.|+....+++..+...|-|+|-||...+..+++-...+. -|- .+..+.|+-..++|.++-...- .+
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F---~G 582 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLF---GG 582 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhh---CC
Confidence 357788888999999999999999999998876655433221 111 2334568888888888766542 24
Q ss_pred ceEEEeeccccccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCCCCceEEEEEeeCCCHHHHHH
Q 000811 677 RFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIFRLITRGSIEERMM 743 (1272)
Q Consensus 677 ~~vfLlSTragg~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ~k~V~Vyrlit~~TvEE~I~ 743 (1272)
+.+-+++|.|+.+||++...|.|+.+.-+.+-+++.|..|||+|-.... ..| +.+..+.||..-+
T Consensus 583 ~L~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~S-Lav-yva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 583 KLCGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPS-LAV-YVAFLGPVDQYYM 647 (1034)
T ss_pred eeeEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCc-eEE-EEEeccchhhHhh
Confidence 5668999999999999999999999999999999999999999965432 222 2344455666543
No 206
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.54 E-value=0.014 Score=63.38 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=69.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCccHHHHHHHHHHHCCCCeEEEE
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~ 364 (1272)
+-+.|...++-|. ...-+++.-..|+|||+.|++....+...+ ..+++|+-|..-... ++- +.|
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~---~lG-flp------- 69 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGE---DLG-FLP------- 69 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCcc---ccc-cCC-------
Confidence 4568999988773 667889999999999999999988877654 357777777654322 221 111
Q ss_pred EcChhHH------HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccc
Q 000811 365 VGTSQAR------NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGH 438 (1272)
Q Consensus 365 ~G~~~~r------~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaH 438 (1272)
|+..++ ......+..+....-.. -...-.|-+.+...++- ..+...+||||||+
T Consensus 70 -G~~~eK~~p~~~p~~d~l~~~~~~~~~~~--------------~~~~~~Ie~~~~~~iRG-----rt~~~~~iIvDEaQ 129 (205)
T PF02562_consen 70 -GDLEEKMEPYLRPIYDALEELFGKEKLEE--------------LIQNGKIEIEPLAFIRG-----RTFDNAFIIVDEAQ 129 (205)
T ss_dssp ---------TTTHHHHHHHTTTS-TTCHHH--------------HHHTTSEEEEEGGGGTT-------B-SEEEEE-SGG
T ss_pred -CCHHHHHHHHHHHHHHHHHHHhChHhHHH--------------HhhcCeEEEEehhhhcC-----ccccceEEEEeccc
Confidence 221111 11111111111110000 00112233443333321 22445899999999
Q ss_pred ccCCcchHHHHHHHhcccccEEEEeccCCCCCH
Q 000811 439 RLKNKDSKLFSSLKQYSTRHRVLLTGTPLQNNL 471 (1272)
Q Consensus 439 rlKn~~S~~~~~l~~l~~~~rllLTGTPlqN~~ 471 (1272)
++.. ..+...+.++....++.++|-|-|...
T Consensus 130 N~t~--~~~k~ilTR~g~~skii~~GD~~Q~D~ 160 (205)
T PF02562_consen 130 NLTP--EELKMILTRIGEGSKIIITGDPSQIDL 160 (205)
T ss_dssp G--H--HHHHHHHTTB-TT-EEEEEE-------
T ss_pred CCCH--HHHHHHHcccCCCcEEEEecCceeecC
Confidence 7643 345555667778899999999977653
No 207
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=96.54 E-value=0.00079 Score=80.82 Aligned_cols=84 Identities=29% Similarity=0.694 Sum_probs=60.1
Q ss_pred cccccCCC-----CceeecC--CCCCccccCcCCCCCCCCCCCCCcCCcCCCCCcccccccccccccCccCCCCcccccc
Q 000811 53 SCQACGES-----ENLMSCD--TCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGS 125 (1272)
Q Consensus 53 ~C~~C~~~-----~~ll~Cd--~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~iekil~~R~rp~~~~~~~~~~~~~ 125 (1272)
-|.||.+. ..|+.|| .|.-+.|+.|+ .+..+|.|.|||..|..-..-. -+.|+++|-.++.-+-.+.
T Consensus 7 GCCVCSDErGWaeNPLVYCDG~nCsVAVHQaCY--GIvqVPtGpWfCrKCesqeraa--rvrCeLCP~kdGALKkTDn-- 80 (900)
T KOG0956|consen 7 GCCVCSDERGWAENPLVYCDGHNCSVAVHQACY--GIVQVPTGPWFCRKCESQERAA--RVRCELCPHKDGALKKTDN-- 80 (900)
T ss_pred ceeeecCcCCCccCceeeecCCCceeeeehhcc--eeEecCCCchhhhhhhhhhhhc--cceeecccCcccceecccC--
Confidence 48899753 2399999 59999999999 8899999999999998643222 2667888877664332222
Q ss_pred hhhhhHHHHhhccCCCcccc-cccChHhHH
Q 000811 126 KQIFVKQYLVKWKGLSYLHC-TWVPEKEFL 154 (1272)
Q Consensus 126 ~~~~~~eYlVKWkg~Sy~h~-tWvpe~~L~ 154 (1272)
-||.|.-| -++||..+-
T Consensus 81 ------------~GWAHVVCALYIPEVrFg 98 (900)
T KOG0956|consen 81 ------------GGWAHVVCALYIPEVRFG 98 (900)
T ss_pred ------------CCceEEEEEeeccceeec
Confidence 24666666 567776554
No 208
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=96.39 E-value=0.0032 Score=71.78 Aligned_cols=58 Identities=31% Similarity=0.388 Sum_probs=49.2
Q ss_pred CCccchhhhhhhccCCCcceEEeecccccccccccccccccccchHHHHHHHHHhhcc
Q 000811 189 PEWTTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKIQSRS 246 (1272)
Q Consensus 189 ~~~~~veRIi~~r~~~~~~eyLVKWkgL~Y~~~tWE~~~~~~~~~~~i~~f~~~~~~~ 246 (1272)
++...|++|+++|...|..+|||||+|.|=.+.|||.+.+...+.+.|+.|..-....
T Consensus 46 ~~~~vvEki~~~r~~~g~~eYlvkW~Gy~~~~ntWEPee~~~~C~~li~~~~~~~~~~ 103 (270)
T KOG1911|consen 46 EEEYVVEKILKRRKKNGKIEYLVKWKGYPDPDNTWEPEEHNLDCPELIDEFEKSQKKL 103 (270)
T ss_pred cchhhhhhhhhccccCCCceeeeecCCCCCccccCCchhhccccHHHHHHHHHHhccc
Confidence 3456899999999888889999999999999999999986666789999999754443
No 209
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.29 E-value=0.0047 Score=61.84 Aligned_cols=35 Identities=26% Similarity=0.528 Sum_probs=26.8
Q ss_pred eeEEeccccccCCcchHHHHHHHhc--ccccEEEEeccC
Q 000811 430 QCMIVDEGHRLKNKDSKLFSSLKQY--STRHRVLLTGTP 466 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~S~~~~~l~~l--~~~~rllLTGTP 466 (1272)
.+|||||+|++. .......++.+ .....++|+|||
T Consensus 89 ~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 89 VLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp EEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred eEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 689999999984 25555666555 466789999999
No 210
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=96.11 E-value=0.0017 Score=76.91 Aligned_cols=53 Identities=26% Similarity=0.658 Sum_probs=42.3
Q ss_pred ccccccCCCC-----ceeecCCCCCccccCcCCCCCCC----CCCCCCcCCcCCCCCccccc
Q 000811 52 DSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKA----PPSGSWRCPECVSPLNDIDK 104 (1272)
Q Consensus 52 ~~C~~C~~~~-----~ll~Cd~C~~~~H~~Cl~P~l~~----~p~~~W~C~~C~~~~~~iek 104 (1272)
..|.+|+.++ .||.|+.|...||..|+.|+... -+...|+|..|......+..
T Consensus 169 ~qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~r 230 (464)
T KOG4323|consen 169 LQCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVPR 230 (464)
T ss_pred ceeeeeecCCcCccceeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccchhhccc
Confidence 4499998654 49999999999999999998754 35677999999986655443
No 211
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.11 E-value=0.026 Score=71.95 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=85.1
Q ss_pred CCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCchhhhcc
Q 000811 313 MGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPKKVKKK 391 (1272)
Q Consensus 313 mGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~~~~~~ 391 (1272)
.|+|||-..+.++...+..+. .+||++|. ++..|+...|...++...++++|..-...+..+.+.-.
T Consensus 169 ~GSGKTevyl~~i~~~l~~Gk-~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~----------- 236 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAGR-GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAV----------- 236 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcCC-eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHH-----------
Confidence 399999999999988887653 69999995 78899999999999767899999876665544443211
Q ss_pred ccCccccccccccccccEEEecHHHHHhhhhccCCC-cceeEEecccccc--CCcchHH-----HHHHH-hcccccEEEE
Q 000811 392 KSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI-KWQCMIVDEGHRL--KNKDSKL-----FSSLK-QYSTRHRVLL 462 (1272)
Q Consensus 392 ~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~-~w~~vIvDEaHrl--Kn~~S~~-----~~~l~-~l~~~~rllL 462 (1272)
......|||-|...+ |-.+ +..+|||||=|.- |...+-. ...++ ....-..+|-
T Consensus 237 -----------~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLg 299 (665)
T PRK14873 237 -----------LRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIG 299 (665)
T ss_pred -----------hCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEE
Confidence 124567899887654 2222 4579999999874 3322211 11111 1223456777
Q ss_pred eccC
Q 000811 463 TGTP 466 (1272)
Q Consensus 463 TGTP 466 (1272)
|+||
T Consensus 300 SaTP 303 (665)
T PRK14873 300 GHAR 303 (665)
T ss_pred CCCC
Confidence 9999
No 212
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.10 E-value=0.011 Score=62.51 Aligned_cols=81 Identities=17% Similarity=0.184 Sum_probs=55.1
Q ss_pred HHcCceEEEEecchhhHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecc--ccccccCccC-
Q 000811 621 KEQGHRVLIYSQFQHMLDLLEDYLTFKKW--QYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR--AGGLGINLAT- 695 (1272)
Q Consensus 621 ~~~g~KVLIFsq~~~~ldiL~~~L~~~g~--~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTr--agg~GINL~~- 695 (1272)
...+.++|||...-..++.+.+++...+. .+..+.- +...+..++++|..... .+|+++. ...+|||++.
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~---~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEG---AILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSS---EEEEEETTSCCGSSS--ECE
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccC---eEEEEEecccEEEeecCCCc
Confidence 34567999999999999999999976532 1122221 24578899999987443 3677777 8899999984
Q ss_pred -CCEEEEecCCC
Q 000811 696 -ADTVIIYDSDW 706 (1272)
Q Consensus 696 -Ad~VIi~D~dW 706 (1272)
+..||+.-.|+
T Consensus 81 ~~r~vii~glPf 92 (167)
T PF13307_consen 81 LLRAVIIVGLPF 92 (167)
T ss_dssp SEEEEEEES---
T ss_pred hhheeeecCCCC
Confidence 78999988886
No 213
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=96.07 E-value=0.0094 Score=72.26 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=63.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc-HHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~p~~~vv 362 (1272)
.+|---|..||... .++.=.||--..|+|||++..+++.+|...+.+|+||++|..+ +.|-..-|.+- .++|+
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t--gLKVv 482 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT--GLKVV 482 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc--CceEe
Confidence 46888999999766 4566789999999999999999999999888889999999765 57777777664 47777
Q ss_pred EEEc
Q 000811 363 MYVG 366 (1272)
Q Consensus 363 ~~~G 366 (1272)
-+..
T Consensus 483 Rl~a 486 (935)
T KOG1802|consen 483 RLCA 486 (935)
T ss_pred eeeh
Confidence 6654
No 214
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.03 E-value=0.013 Score=69.20 Aligned_cols=66 Identities=18% Similarity=0.190 Sum_probs=50.0
Q ss_pred CCCCCCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCC-C-cEEEEecC
Q 000811 277 SPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI-S-PHLVVAPL 342 (1272)
Q Consensus 277 ~P~~~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-~-p~LIVvP~ 342 (1272)
.|.+++-...+|-|..-..-+...+..+++|+|-++.|+|||+.-++++.......+ . .-||-|..
T Consensus 8 l~v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSR 75 (755)
T KOG1131|consen 8 LLVYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSR 75 (755)
T ss_pred eeEecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecC
Confidence 344555567899999988888888899999999999999999998888765543322 2 44666653
No 215
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.84 E-value=0.092 Score=57.02 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=39.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll 345 (1272)
+|.+-|.+++..+.. ...+-.+|.-..|+|||.....+...+...+ .++++++|+...
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~A 58 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKA 58 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHH
Confidence 477899999987732 2334577889999999987666555555543 699999998655
No 216
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.81 E-value=0.033 Score=66.20 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=33.2
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhh-CCCCcEEEEecCccHHHHHHH
Q 000811 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~-~~~~p~LIVvP~sll~qW~~E 351 (1272)
.|+--..|+|||+.++.++..+.. ......+++|+...+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHH
Confidence 467778999999999999999822 223477888887777665443
No 217
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.75 E-value=0.0072 Score=68.07 Aligned_cols=50 Identities=32% Similarity=0.357 Sum_probs=43.0
Q ss_pred cchhhhhhhccCCCcceEEeecccccccccccccccccccchHHHHHHHHH
Q 000811 192 TTVDRILACRGEDDEKEYLVKYKELSYDECYWEYESDISAFQPEIERFIKI 242 (1272)
Q Consensus 192 ~~veRIi~~r~~~~~~eyLVKWkgL~Y~~~tWE~~~~~~~~~~~i~~f~~~ 242 (1272)
..+|-||-+|...|..+|||||+|-.--..|||.++.|.. .-+|..|...
T Consensus 11 fAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILD-pRLi~AFe~r 60 (369)
T KOG2748|consen 11 FAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILD-PRLIAAFEQR 60 (369)
T ss_pred HHHHHHHHHHhhccceEEEEEecccccccCccCccccccC-HHHHHHHHhh
Confidence 3688999999888999999999999999999999998864 5678888764
No 218
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.56 E-value=0.0062 Score=80.99 Aligned_cols=179 Identities=26% Similarity=0.392 Sum_probs=98.7
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCCh--HHHHHHHHHHHHhhC-CCCcEEEEecCccHHHHHHHHHHHCCCCeE
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLG--KTIQSIAFLASLFGE-RISPHLVVAPLSTLRNWEREFATWAPQMNV 361 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlG--KTiqaia~l~~l~~~-~~~p~LIVvP~sll~qW~~E~~~~~p~~~v 361 (1272)
.+.++|.....-... .......++++.|+| ||+.+..+....... .....++++|..+..+|..+...++. ...
T Consensus 84 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~ 160 (866)
T COG0553 84 ILIPHQLDIALEVLN--ELALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEKFN-IRL 160 (866)
T ss_pred ccCcchhhhhhhhhh--hhhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhhcc-ccc
Confidence 455666665432211 122238899999999 899887776665443 34588999998888999999877631 111
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhh----hhccCCCcc---eeEEe
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLD----SASLKPIKW---QCMIV 434 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d----~~~L~~~~w---~~vIv 434 (1272)
.+..-.. .+........+. .......++.+.+..... ...+....| +++++
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (866)
T COG0553 161 AVLDKEG-LRYLLKQYDAYN---------------------PFSTEDLVLISLDLAKRSDSKRREALLEAEWGERDLLVI 218 (866)
T ss_pred hhhhhhh-hhhhhhhhcccc---------------------cccchhhhhhhhhhhhhhhhhhhhhhhcccccchhhhhc
Confidence 1111000 000000000000 000000033334433332 223344456 89999
Q ss_pred ccccccCCcc---------hHHHHHHHhccc--------ccEEEEeccCCCCCHHHHHHHHHhhcCCCCCC
Q 000811 435 DEGHRLKNKD---------SKLFSSLKQYST--------RHRVLLTGTPLQNNLDELFMLMHFLDAGKFGS 488 (1272)
Q Consensus 435 DEaHrlKn~~---------S~~~~~l~~l~~--------~~rllLTGTPlqN~~~EL~~Ll~fL~p~~f~~ 488 (1272)
||+|.+.+.. ...+..+..... ....++++||.+....+++....++.+..+.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 219 DEAHNLGSSEGTRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred chHhhcccccccccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 9999987742 233333333221 13358899999999888888777777766655
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.06 E-value=0.099 Score=66.78 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=55.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc-HHHHHHHHHHHCCCCeEE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST-LRNWEREFATWAPQMNVV 362 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl-l~qW~~E~~~~~p~~~vv 362 (1272)
..|-+.|..+|.... ......++--..|+|||.+++.++..+...+. ++||++|+.. +.+....+... +.+++
T Consensus 156 ~~ln~~Q~~Av~~~l---~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~-~VLv~a~sn~Avd~l~e~l~~~--~~~vv 229 (637)
T TIGR00376 156 PNLNESQKEAVSFAL---SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGL-RVLVTAPSNIAVDNLLERLALC--DQKIV 229 (637)
T ss_pred CCCCHHHHHHHHHHh---cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCC-CEEEEcCcHHHHHHHHHHHHhC--CCcEE
Confidence 568999999997652 33467888999999999999999888876543 8999999754 56666666553 34444
Q ss_pred EE
Q 000811 363 MY 364 (1272)
Q Consensus 363 ~~ 364 (1272)
-+
T Consensus 230 Rl 231 (637)
T TIGR00376 230 RL 231 (637)
T ss_pred Ee
Confidence 43
No 220
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=94.79 E-value=0.047 Score=66.44 Aligned_cols=64 Identities=22% Similarity=0.325 Sum_probs=49.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc-cHHHHHHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWERE 351 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~E 351 (1272)
..|-+-|..++.+.. .+..-.++--+.|+|||.+..-++..+...+ ..+||.+|+. .+.|-...
T Consensus 184 ~~ln~SQk~Av~~~~---~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~-k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAI---NNKDLLIIHGPPGTGKTRTLVEIISQLVKQK-KRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccccHHHHHHHHHHh---ccCCceEeeCCCCCCceeeHHHHHHHHHHcC-CeEEEEcCchHHHHHHHHH
Confidence 457789999998773 2335577888999999999988888887665 6899999965 45676554
No 221
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.61 E-value=0.22 Score=64.56 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=49.3
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-CCcEEEEecCccHHHHHHH
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-ISPHLVVAPLSTLRNWERE 351 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~~p~LIVvP~sll~qW~~E 351 (1272)
+..|.+-|.+++..+ ..++-.+|.-..|+|||.++-+++..+...+ ..++++++|+..-.....+
T Consensus 321 ~~~l~~~Q~~Ai~~~----~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTA----IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHH----HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 457999999999866 3456789999999999988877777665543 2478889998766654443
No 222
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.56 E-value=0.29 Score=48.87 Aligned_cols=41 Identities=27% Similarity=0.329 Sum_probs=27.9
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll 345 (1272)
+...++.-+.|.|||..+-.++..+... ..+++++......
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRP-GAPFLYLNASDLL 59 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcC-CCCeEEEehhhhh
Confidence 6678899999999998777777666422 2355555444433
No 223
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=94.52 E-value=0.098 Score=67.98 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=77.2
Q ss_pred hcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000811 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1272)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll-----~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~ 375 (1272)
+..+.+++++...|+|||++|=..+ +.....+.+.-++|...+ .-|.+.|..- .++.++...|...-...+
T Consensus 1156 y~~nd~v~vga~~gsgkt~~ae~a~--l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl- 1231 (1674)
T KOG0951|consen 1156 YNTNDNVLVGAPNGSGKTACAELAL--LRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL- 1231 (1674)
T ss_pred ecccceEEEecCCCCchhHHHHHHh--cCCccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH-
Confidence 4567889999999999998873332 224556689999998766 5588888877 477777777765322111
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCCcch
Q 000811 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDS 445 (1272)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S 445 (1272)
..+-+|+|.|++....-. ..+ .-++.|+||.|-+.+...
T Consensus 1232 ----------------------------~~~~~vii~tpe~~d~lq-~iQ--~v~l~i~d~lh~igg~~g 1270 (1674)
T KOG0951|consen 1232 ----------------------------LQKGQVIISTPEQWDLLQ-SIQ--QVDLFIVDELHLIGGVYG 1270 (1674)
T ss_pred ----------------------------hhhcceEEechhHHHHHh-hhh--hcceEeeehhhhhcccCC
Confidence 235679999999875442 222 357899999999976443
No 224
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.09 E-value=0.32 Score=61.71 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHH----HHHHHHHhhC---------C------------------
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQS----IAFLASLFGE---------R------------------ 332 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqa----ia~l~~l~~~---------~------------------ 332 (1272)
.+++|-|+.-+..++..+....+|+|-+++|+|||+.- +|+..++... .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 56799999999999999999999999999999999874 4444444310 0
Q ss_pred ---C------CcEEEEecC--ccHHHHHHHHHHHCCCCeEEEE
Q 000811 333 ---I------SPHLVVAPL--STLRNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 333 ---~------~p~LIVvP~--sll~qW~~E~~~~~p~~~vv~~ 364 (1272)
. -|.++.+-. +-|.|-.+|+.+..-.++.+++
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVL 142 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVL 142 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEe
Confidence 0 145666663 3478889999886533444443
No 225
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=94.04 E-value=0.0086 Score=46.09 Aligned_cols=34 Identities=35% Similarity=0.948 Sum_probs=19.4
Q ss_pred CceeecCCCCCccccCcCCCCCCCCCCC-CCcCCcCC
Q 000811 61 ENLMSCDTCTYAYHAKCLVPPLKAPPSG-SWRCPECV 96 (1272)
Q Consensus 61 ~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~-~W~C~~C~ 96 (1272)
+.|+.|+.|.-.+|..|. .+...|.+ +|+|..|.
T Consensus 2 n~ll~C~~C~v~VH~~CY--Gv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 2 NPLLFCDNCNVAVHQSCY--GVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp CEEEE-SSS--EEEHHHH--T-SS--SS-----HHH-
T ss_pred CceEEeCCCCCcCChhhC--CcccCCCCCcEECCcCC
Confidence 358999999999999999 66666666 79998884
No 226
>PLN03025 replication factor C subunit; Provisional
Probab=94.00 E-value=0.54 Score=55.08 Aligned_cols=40 Identities=25% Similarity=0.372 Sum_probs=28.1
Q ss_pred HHHHHHHHhhcC--CCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~--~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
+.+..|...... ..+.+|.-+.|+|||..+.+++..+...
T Consensus 20 ~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~ 61 (319)
T PLN03025 20 DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 61 (319)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 344444333333 2467999999999999999998887643
No 227
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=93.98 E-value=0.12 Score=56.98 Aligned_cols=73 Identities=19% Similarity=0.191 Sum_probs=61.3
Q ss_pred CCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 282 SGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 282 ~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
.+..+||-|.+.+..|+.. ..+.|.++-.-||-|||-..+-+++.++..+..=+-+|||++++.+=..-+..-
T Consensus 20 ~~iliR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALLEQMRQMLRSR 92 (229)
T ss_pred cCceeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 3567999999999888754 567899999999999999999998888888777788999999998876666543
No 228
>PRK04296 thymidine kinase; Provisional
Probab=93.94 E-value=0.16 Score=54.82 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=26.2
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
.++.-+||.|||..++.++..+...+ .+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEec
Confidence 46788999999999999988776543 36677755
No 229
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=0.06 Score=65.04 Aligned_cols=37 Identities=16% Similarity=0.217 Sum_probs=31.6
Q ss_pred EeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHH
Q 000811 310 ADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLR 346 (1272)
Q Consensus 310 aDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~ 346 (1272)
-+.+|+|||+++.++|.+++..+...+|..|-. +++.
T Consensus 3 ~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nile 40 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILE 40 (812)
T ss_pred ccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHH
Confidence 367999999999999999999998899998884 4443
No 230
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=93.34 E-value=1.1 Score=57.13 Aligned_cols=42 Identities=26% Similarity=0.273 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+..++ + .||.-.-|+|||..+..|...|...
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3444444544444432 3 4889999999999999999888653
No 231
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=93.31 E-value=0.07 Score=43.92 Aligned_cols=29 Identities=41% Similarity=0.660 Sum_probs=24.4
Q ss_pred CCcCHHHHHHHHHHHHhhccCchHHhhcC
Q 000811 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D 1110 (1272)
..||++||..|+.+|.+||-++|..|-.-
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~ 30 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKR 30 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 37999999999999999999999877543
No 232
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.20 E-value=0.37 Score=60.92 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCC----CcEEEEecCccH
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERI----SPHLVVAPLSTL 345 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~----~p~LIVvP~sll 345 (1272)
+.|..++... ..+.-.+|.-..|+|||.++..++..+..... ..+++++|+.--
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkA 205 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKA 205 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHH
Confidence 7999998655 34677899999999999998888877754321 368999997544
No 233
>PRK06526 transposase; Provisional
Probab=92.80 E-value=0.54 Score=53.21 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHH
Q 000811 291 LEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 291 legv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1272)
+.+..|+ ..+.+.+|.-..|+|||..+.++...+...+. +++++ +...|.+++.
T Consensus 89 l~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~-~v~f~----t~~~l~~~l~ 142 (254)
T PRK06526 89 LGTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAGH-RVLFA----TAAQWVARLA 142 (254)
T ss_pred HhcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCCC-chhhh----hHHHHHHHHH
Confidence 3344676 57788999999999999999999888776543 44443 2345656554
No 234
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=92.74 E-value=0.26 Score=56.05 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=22.2
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.+.+|.-+.|+|||..|-++...+...
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l~~~ 69 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLFKEM 69 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 467899999999999998887776543
No 235
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.41 Score=58.46 Aligned_cols=42 Identities=21% Similarity=0.144 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-..+..|......++ ..|+.-+.|+|||..|..++..+...
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4444444444444443 25899999999999999999887654
No 236
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=0.34 Score=57.44 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|.+++..|...+..++ ..++.-+.|+|||..+..++..+...
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~ 72 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSH 72 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 4556677777777665 46789999999999999999998764
No 237
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=92.63 E-value=2.1 Score=56.30 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=22.0
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.||.-..|+|||..+..|+..|...
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 5799999999999999999988753
No 238
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.51 E-value=0.58 Score=54.97 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=29.4
Q ss_pred HHHHHHHhhcCCC--ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 293 GLNFLRFSWSKQT--HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 293 gv~wL~~~~~~~~--~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
.+.+|......+. +.+|.-+.|+|||..+.+++..+....
T Consensus 23 ~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~ 64 (337)
T PRK12402 23 VVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP 64 (337)
T ss_pred HHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 3444444445555 789999999999999999998886543
No 239
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.45 E-value=0.36 Score=61.26 Aligned_cols=57 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC---CCcEEEEecCccHH
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLR 346 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~---~~p~LIVvP~sll~ 346 (1272)
..+.|..++.-. ..+.-++|.-..|+|||.++..++..+.... ...+++++|+.--.
T Consensus 153 ~~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA 212 (615)
T PRK10875 153 EVDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAA 212 (615)
T ss_pred CCHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHH
Confidence 458999998654 4567789999999999999888888775532 23688889976543
No 240
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.15 E-value=0.47 Score=46.80 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.4
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q 347 (1272)
+...+|.-.+|+|||..+..++..+.... ..++++.+......
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~ 44 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEE 44 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEcccc
Confidence 45678999999999999988888765543 35667766554443
No 241
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.07 E-value=1.3 Score=53.06 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=35.7
Q ss_pred cceeEEeccccccCCcch---HHHHHHHhccc--ccEEEEeccCCCCCHHHHHHHHHhhcC
Q 000811 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYST--RHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S---~~~~~l~~l~~--~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1272)
..++||||++.+...... .+...+..... ...|.|+||--++.+.+++.-...+.+
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 468999999998864332 23333333332 356889999877777777765554433
No 242
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=91.98 E-value=0.16 Score=40.98 Aligned_cols=30 Identities=37% Similarity=0.667 Sum_probs=26.8
Q ss_pred CCcCHHHHHHHHHHHHhhccCchHHhhcCc
Q 000811 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1272)
..|+.+||..|+.++.+||.++|..|....
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~ 31 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNNWEKIAKEL 31 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCCHHHHHHHc
Confidence 579999999999999999999998886653
No 243
>KOG1911 consensus Heterochromatin-associated protein HP1 and related CHROMO domain proteins [Chromatin structure and dynamics]
Probab=91.98 E-value=0.087 Score=60.16 Aligned_cols=25 Identities=44% Similarity=0.789 Sum_probs=21.9
Q ss_pred HHHHhhccCCCcccccccChH-hHHH
Q 000811 131 KQYLVKWKGLSYLHCTWVPEK-EFLK 155 (1272)
Q Consensus 131 ~eYlVKWkg~Sy~h~tWvpe~-~L~~ 155 (1272)
.+|||||+|++.-.|||.|+. .+.|
T Consensus 64 ~eYlvkW~Gy~~~~ntWEPee~~~~C 89 (270)
T KOG1911|consen 64 IEYLVKWKGYPDPDNTWEPEEHNLDC 89 (270)
T ss_pred ceeeeecCCCCCccccCCchhhcccc
Confidence 479999999999999999998 5544
No 244
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=91.74 E-value=0.072 Score=67.05 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=60.8
Q ss_pred ccccccccCCCCceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCcccccccccccccCccCCCCcccccchhhh
Q 000811 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDIDKILDCEMRPTVAGDSDVSKLGSKQIF 129 (1272)
Q Consensus 50 ~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~iekil~~R~rp~~~~~~~~~~~~~~~~~ 129 (1272)
+..-|.+|..++.+.+|+.|++.||..|+.|+...++..-|.|..|..
T Consensus 176 ~~~~~~~~~~~~k~~~~a~~~~r~~~~~iKpe~~~i~rii~~~~s~~~-------------------------------- 223 (696)
T KOG0383|consen 176 PEAEIGVTRDKGKLVPYADLEERFLLYGIKPEWMPIARIINRRSSQKG-------------------------------- 223 (696)
T ss_pred ccccccccccCccccccccchhhhhheeccccccccchhhhhhccccc--------------------------------
Confidence 445688899999999999999999999999988888888888877753
Q ss_pred hHHHHhhccCCCcccccccChHh
Q 000811 130 VKQYLVKWKGLSYLHCTWVPEKE 152 (1272)
Q Consensus 130 ~~eYlVKWkg~Sy~h~tWvpe~~ 152 (1272)
...|+|||+..+|..++|..+..
T Consensus 224 ~~~~~Vk~k~l~~d~~~~e~~~~ 246 (696)
T KOG0383|consen 224 ATDYLVKWKELSYDEQEWEVEDP 246 (696)
T ss_pred ceeeEeeeccCCccccCCCcCCC
Confidence 12799999999999999998774
No 245
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.71 E-value=0.58 Score=54.22 Aligned_cols=73 Identities=21% Similarity=0.163 Sum_probs=43.3
Q ss_pred cccccCCCCCCCCCCCcH-HHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh-hC-CCCcEEEEecCccH
Q 000811 271 FQQYEHSPEFLSGGSLHP-YQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF-GE-RISPHLVVAPLSTL 345 (1272)
Q Consensus 271 ~~~~~~~P~~~~g~~Lr~-yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~-~~-~~~p~LIVvP~sll 345 (1272)
+..+...+..+.|...+. +|.-++..|.. ..-.=+.|.-.-|+|||+-|+|...+-. .. ...+++|-=|.--+
T Consensus 213 i~~l~~~~~~vwGi~prn~eQ~~ALdlLld--~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 213 ILLLKHEDQEVWGIRPRNAEQRVALDLLLD--DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred EEecccCchhhhccCcccHHHHHHHHHhcC--CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 334445565666655444 88888887621 1233467888999999998877655432 22 22355555454433
No 246
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=91.65 E-value=0.17 Score=40.10 Aligned_cols=29 Identities=45% Similarity=0.759 Sum_probs=26.1
Q ss_pred CcCHHHHHHHHHHHHhhccCchHHhhcCc
Q 000811 1083 FWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1083 ~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1272)
.||.+||..|+.++.+||.++|..|....
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~ 29 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKEL 29 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHc
Confidence 49999999999999999999998887654
No 247
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=91.57 E-value=0.19 Score=51.66 Aligned_cols=34 Identities=35% Similarity=0.870 Sum_probs=26.1
Q ss_pred eeecCCCCCccccCcCCCCCCCC------------------CCCCCcCCcCC
Q 000811 63 LMSCDTCTYAYHAKCLVPPLKAP------------------PSGSWRCPECV 96 (1272)
Q Consensus 63 ll~Cd~C~~~~H~~Cl~P~l~~~------------------p~~~W~C~~C~ 96 (1272)
|++|..|.++||+.+|.|+-... -+.+|.|..|.
T Consensus 124 LFRC~~C~RawH~~HLP~~~~~~~~~~~~~~~~~~~~R~~EYs~~W~C~dC~ 175 (175)
T PF15446_consen 124 LFRCTSCHRAWHFEHLPPPSGTTSDDDDDDDTDLRSQRLKEYSIDWQCKDCA 175 (175)
T ss_pred EEecCCccceeehhhCCCCcCCCCCcccccchhHHHHHHHHhCCccccCCCC
Confidence 89999999999999997653211 13479999984
No 248
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.40 E-value=1.5 Score=55.42 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=22.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..||.-..|+|||..+..++..|...
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 35889999999999999999988753
No 249
>PRK08181 transposase; Validated
Probab=91.04 E-value=1.8 Score=49.41 Aligned_cols=53 Identities=17% Similarity=0.065 Sum_probs=37.6
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEE
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIV 339 (1272)
+..-|..++..+......+.+.+|.-+.|+|||..+.++...+...+ ..++++
T Consensus 88 ~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~ 140 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFT 140 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC-Cceeee
Confidence 45577777654422236788899999999999999999888776653 244444
No 250
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.93 E-value=2.2 Score=51.97 Aligned_cols=56 Identities=13% Similarity=0.205 Sum_probs=34.0
Q ss_pred cceeEEeccccccCCcchH---HHHHHHhc--ccccEEEEeccCCCCCHHHHHHHHHhhcC
Q 000811 428 KWQCMIVDEGHRLKNKDSK---LFSSLKQY--STRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~---~~~~l~~l--~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1272)
.+++||||-+-+....... +...+... .....|+|++|+-++.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 4689999998765433222 22222211 12457889999877777777766665544
No 251
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=90.75 E-value=1.2 Score=45.83 Aligned_cols=45 Identities=20% Similarity=0.300 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhccCCCceEEEeeccccccccCccC--CCEEEEecCCC
Q 000811 660 GAERQIRIDRFNAKNSSRFCFLLSTRAGGLGINLAT--ADTVIIYDSDW 706 (1272)
Q Consensus 660 ~~~Rq~~I~~Fn~~~s~~~vfLlSTragg~GINL~~--Ad~VIi~D~dW 706 (1272)
..+...+++.|...... .+|+++....+|||++. +..||+.-.|+
T Consensus 33 ~~~~~~~l~~f~~~~~~--~iL~~~~~~~EGiD~~g~~~r~vii~glPf 79 (141)
T smart00492 33 GKETGKLLEKYVEACEN--AILLATARFSEGVDFPGDYLRAVIIDGLPF 79 (141)
T ss_pred hhHHHHHHHHHHHcCCC--EEEEEccceecceecCCCCeeEEEEEecCC
Confidence 34578899999864432 46788877999999985 67899987665
No 252
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.72 E-value=1.3 Score=48.82 Aligned_cols=43 Identities=23% Similarity=0.186 Sum_probs=29.2
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q 347 (1272)
.+.+.+|.-+.|+|||..+.++...+...+ .+ ++.++.+.+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~-~~-~~~i~~~~~~~ 79 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERG-KS-AIYLPLAELAQ 79 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-Cc-EEEEeHHHHHH
Confidence 456788999999999999988887766443 23 34444444433
No 253
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=90.31 E-value=1.5 Score=49.64 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhhcCCC-ceEEEeCCCChHHHHHHHHHHHHh
Q 000811 288 PYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLF 329 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~-~~ILaDemGlGKTiqaia~l~~l~ 329 (1272)
+.+..+++.+......+. .++|.-+.|+|||..+-.++..+.
T Consensus 26 ~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 26 KGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 455667777766555544 477899999999988877766554
No 254
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.96 E-value=8.5 Score=48.95 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=26.4
Q ss_pred HHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 294 v~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+..|...+..+ ...|+....|+|||..|.+++..+..
T Consensus 24 v~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 24 SRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33344434444 34489999999999999999888754
No 255
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=89.85 E-value=0.51 Score=54.35 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=27.0
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCC---CcEEEEe
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERI---SPHLVVA 340 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~---~p~LIVv 340 (1272)
+.+.+|.-+.|+|||..|-++...+...+. ++++.+.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~ 97 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT 97 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec
Confidence 346789999999999999888887765432 2555444
No 256
>CHL00181 cbbX CbbX; Provisional
Probab=89.56 E-value=0.59 Score=53.89 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
+.+.+|.-+.|+|||..|-++...+...+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34578999999999999998888776543
No 257
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=89.13 E-value=1.4 Score=45.35 Aligned_cols=54 Identities=24% Similarity=0.353 Sum_probs=34.2
Q ss_pred EEEeCCCCHHHHHHHHHHHhccCCCceEEEeeccc--cccccCccC--CCEEEEecCCC
Q 000811 652 ERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRA--GGLGINLAT--ADTVIIYDSDW 706 (1272)
Q Consensus 652 ~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTra--gg~GINL~~--Ad~VIi~D~dW 706 (1272)
..+.+... .+...+++.|.......-.+|+++.. .++|||++. +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 33444332 34478899998643310124555554 899999985 68899987775
No 258
>PHA02533 17 large terminase protein; Provisional
Probab=89.11 E-value=2.3 Score=53.30 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=37.8
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh-CCCCcEEEEecC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPL 342 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~-~~~~p~LIVvP~ 342 (1272)
..|+|+|..-+..| ..++-.++.-.=..|||..+.+++.++.- .....+++++|.
T Consensus 58 f~L~p~Q~~i~~~~----~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 58 VQMRDYQKDMLKIM----HKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred cCCcHHHHHHHHHH----hcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 56999999988766 22344567777889999988766554432 333377888884
No 259
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=89.09 E-value=4.4 Score=49.15 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=92.6
Q ss_pred hHHHHH-HHHHHHHH--HcCceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 608 GKLQLL-DKMMVKLK--EQGHRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 608 ~Kl~~L-~klL~~l~--~~g~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
.++... .++|+.+. ....++|||...---.=.|..+|...++.|+.++--++..+-..+-..|..+... ++|.|-
T Consensus 281 ~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~--iLL~TE 358 (442)
T PF06862_consen 281 ARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKP--ILLYTE 358 (442)
T ss_pred HHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCce--EEEEEh
Confidence 344444 34777776 3346899998766556668999999999999999999999999999999875443 456666
Q ss_pred ccc-ccccCccCCCEEEEecCCCChhhHHHHHHhhhhcCC----CCceEEEEEeeC
Q 000811 685 RAG-GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQ----TNKVMIFRLITR 735 (1272)
Q Consensus 685 rag-g~GINL~~Ad~VIi~D~dWNp~~~~Qa~gRahRiGQ----~k~V~Vyrlit~ 735 (1272)
|+- =.=..+..+.+||+|.+|-+|+-+...+.-...-.+ ...+.|.-|.++
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 652 344567789999999999999999888865544333 234555556665
No 260
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=89.03 E-value=0.13 Score=62.78 Aligned_cols=60 Identities=35% Similarity=0.782 Sum_probs=43.0
Q ss_pred ccccccccCCCC-----ceeecCCCCCccccCcCCCCCCCC-CCCCCcCCcCCC-----CCcccccccccc
Q 000811 50 KDDSCQACGESE-----NLMSCDTCTYAYHAKCLVPPLKAP-PSGSWRCPECVS-----PLNDIDKILDCE 109 (1272)
Q Consensus 50 ~~~~C~~C~~~~-----~ll~Cd~C~~~~H~~Cl~P~l~~~-p~~~W~C~~C~~-----~~~~iekil~~R 109 (1272)
....|.+|+..| .|+.|..|...||.+|+.-.+... -.+.|.||.|.- ..+++.+.+.|.
T Consensus 17 ~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~~~gD~~kf~~Ck 87 (694)
T KOG4443|consen 17 VCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACGTTGDPKKFLLCK 87 (694)
T ss_pred hhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCceeeeeccccCCcccccccc
Confidence 346788888654 499999999999999996544332 244599999983 234566776663
No 261
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.01 E-value=2.2 Score=55.66 Aligned_cols=42 Identities=29% Similarity=0.319 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCC--Cce-EEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~--~~~-ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+..+ .+. ||.-+.|+|||..+-.|+..|...
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 333444444444443 344 799999999999999999888653
No 262
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=88.96 E-value=4.2 Score=47.22 Aligned_cols=26 Identities=38% Similarity=0.705 Sum_probs=21.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
+.+|.-+.|+|||..+-+++..+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~ 65 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGE 65 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 58999999999999998888877543
No 263
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.85 E-value=5.6 Score=50.84 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|...+..+ ...||.-..|+|||..+..++..|...
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444433443 345899999999999999998887643
No 264
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.74 E-value=0.63 Score=58.61 Aligned_cols=167 Identities=15% Similarity=0.209 Sum_probs=97.7
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc-cHHHHHH-HHHHHCCCCeE
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS-TLRNWER-EFATWAPQMNV 361 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s-ll~qW~~-E~~~~~p~~~v 361 (1272)
....|||.+-++-|... .-..+.+.-..-+|||...+.++.+.....++|+|+|.|+. ....|.. .|.-..
T Consensus 15 ~~~~Py~~eimd~~~~~--~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi----- 87 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDP--SVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMI----- 87 (557)
T ss_pred CCCChhHHHHHHhcCCc--CccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHH-----
Confidence 46889999998876221 13567788888999999999999998888889999999974 4456653 343322
Q ss_pred EEEEcChhHHHHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecccccc-
Q 000811 362 VMYVGTSQARNIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRL- 440 (1272)
Q Consensus 362 v~~~G~~~~r~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrl- 440 (1272)
..+...+..+... . .+..+..+.... - ..-.+.++...+ ...|.+...++|++||..++
T Consensus 88 ---~~sp~l~~~~~~~------~-----~~~~~~t~~~k~-f-~gg~l~~~ga~S----~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 88 ---RASPVLRRKLSPS------K-----SRDSGNTILYKR-F-PGGFLYLVGANS----PSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ---HhCHHHHHHhCch------h-----hcccCCchhhee-c-CCCEEEEEeCCC----CcccccCCcCEEEEechhhcc
Confidence 1111111111110 0 000000000000 0 011233333322 45678888999999999988
Q ss_pred ---CCcchHHHHHH---HhcccccEEEEeccCCCCCHHHHHHH
Q 000811 441 ---KNKDSKLFSSL---KQYSTRHRVLLTGTPLQNNLDELFML 477 (1272)
Q Consensus 441 ---Kn~~S~~~~~l---~~l~~~~rllLTGTPlqN~~~EL~~L 477 (1272)
++..+.+..+. ..+....++++..||......-+..+
T Consensus 148 ~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~ 190 (557)
T PF05876_consen 148 DDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERL 190 (557)
T ss_pred ccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHH
Confidence 33344444443 34556788999999976654444433
No 265
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.35 E-value=2 Score=54.63 Aligned_cols=42 Identities=24% Similarity=0.202 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-..+..|...+..++ + .|+.-+.|+|||..+..|+..+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 3444455555555543 3 4789999999999999999888654
No 266
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=88.34 E-value=2.2 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=22.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..|+..+.|+|||..|.+++..+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 36789999999999999999887654
No 267
>PRK14974 cell division protein FtsY; Provisional
Probab=88.22 E-value=3.1 Score=49.04 Aligned_cols=35 Identities=17% Similarity=0.171 Sum_probs=25.1
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
-.++.-..|.|||.++..++..+...+. +++++..
T Consensus 142 vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~~ 176 (336)
T PRK14974 142 VIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAAG 176 (336)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEecC
Confidence 3567889999999998888877765543 4555543
No 268
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=88.19 E-value=2.1 Score=53.13 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+..++ ..||.-+.|+|||..|-.++..+...
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4455555555445543 67899999999999999999888653
No 269
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.07 E-value=2.8 Score=50.15 Aligned_cols=42 Identities=24% Similarity=0.140 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhh
Q 000811 289 YQLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 289 yQlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
-|...+..|...+..++ + .+|.-+.|+|||..|-+++..+..
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 34555555655555542 3 489999999999999999888763
No 270
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.06 E-value=4.2 Score=48.64 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.7
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
....|.-..|.|||.++..++..+...+. .+++|.-
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~a 277 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITT 277 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEec
Confidence 34568889999999999888887765543 4544443
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.97 E-value=3.3 Score=48.23 Aligned_cols=39 Identities=28% Similarity=0.335 Sum_probs=24.8
Q ss_pred ceeEEeccccccCCcc--hHHHHHHHhcccccEEEEeccCC
Q 000811 429 WQCMIVDEGHRLKNKD--SKLFSSLKQYSTRHRVLLTGTPL 467 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~--S~~~~~l~~l~~~~rllLTGTPl 467 (1272)
..+|||||+|++.... ..+...+.......++++|++..
T Consensus 101 ~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 101 GKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred CeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 4689999999983322 22333344455666788887653
No 272
>PRK08084 DNA replication initiation factor; Provisional
Probab=87.85 E-value=3 Score=46.60 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=22.2
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
+...+|.-+.|+|||..+.++...+...
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~ 72 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQR 72 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 4567899999999998887777766543
No 273
>PRK08116 hypothetical protein; Validated
Probab=87.77 E-value=4.2 Score=46.43 Aligned_cols=43 Identities=21% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q 347 (1272)
+.+.+|.-++|+|||..+.+++..+...+ .+++++.-..++..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~-~~v~~~~~~~ll~~ 156 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKG-VPVIFVNFPQLLNR 156 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEEHHHHHHH
Confidence 44688999999999999999999988763 36655543344433
No 274
>KOG4299 consensus PHD Zn-finger protein [General function prediction only]
Probab=87.65 E-value=0.35 Score=59.18 Aligned_cols=47 Identities=32% Similarity=0.809 Sum_probs=38.7
Q ss_pred cccccccCCCCceeecCCCCCccccCcCCCCCCC-CCCCCCcCCcCCC
Q 000811 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA-PPSGSWRCPECVS 97 (1272)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~-~p~~~W~C~~C~~ 97 (1272)
-..|.+|..+|++++|+.|+.+||..|-.+++.. .+...|.|..|-.
T Consensus 47 ~ts~~~~~~~gn~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 47 ATSCGICKSGGNLLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred hhhcchhhhcCCccccccCccccchhccCcccCcccccccccccCCCc
Confidence 5789999999999999999999999999998862 2345577777653
No 275
>PRK08727 hypothetical protein; Validated
Probab=87.59 E-value=4.1 Score=45.51 Aligned_cols=27 Identities=26% Similarity=0.265 Sum_probs=22.2
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
..+|.-+.|+|||..+.++...+...+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~ 69 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAG 69 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 478999999999988888887776554
No 276
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.12 E-value=2.4 Score=49.88 Aligned_cols=47 Identities=21% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.++|+|.....-+...-.-...-++..+.|+|||..|.+++..+...
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~ 49 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCE 49 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCC
Confidence 36788888876665541122335678999999999999999998764
No 277
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=86.95 E-value=3.4 Score=47.19 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhcC--CCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 289 YQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 289 yQlegv~wL~~~~~~--~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
+|-..|+-|...... ..+-++.-+.|+|||-++++|...|...
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 777777777555544 3456888999999999999999998763
No 278
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.68 E-value=5.1 Score=50.04 Aligned_cols=42 Identities=26% Similarity=0.254 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhcCC--Cc-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~--~~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|......+ .+ .|+.-..|+|||..|..++..+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444444333 23 4889999999999999999888653
No 279
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=86.66 E-value=4.3 Score=50.72 Aligned_cols=40 Identities=23% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|...+..+. + .++.-+.|.|||..+.+++..+...
T Consensus 21 ~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 21 SVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 33444444444443 2 3789999999999999999988653
No 280
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.60 E-value=6 Score=47.89 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+.++ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 444445555555554 236789999999999999999988653
No 281
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=86.58 E-value=0.49 Score=55.64 Aligned_cols=31 Identities=35% Similarity=0.724 Sum_probs=28.3
Q ss_pred CCCcCHHHHHHHHHHHHhhccCchHHhhcCc
Q 000811 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDK 1111 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~ 1111 (1272)
...||-+|+..||-++..||||||+.|-.-.
T Consensus 72 ~~~WtadEEilLLea~~t~G~GNW~dIA~hI 102 (438)
T KOG0457|consen 72 DPSWTADEEILLLEAAETYGFGNWQDIADHI 102 (438)
T ss_pred CCCCChHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5689999999999999999999999987764
No 282
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=86.40 E-value=1.5 Score=36.01 Aligned_cols=42 Identities=12% Similarity=0.416 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHhcCCCccchhhhchhhc-CCCHHHHHHHHHH
Q 000811 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLK-QKSYEEIREYGIL 1012 (1272)
Q Consensus 969 F~~~~rr~Fv~a~~kyG~~~~~~~~i~~el~-~Ks~~Evk~Y~~l 1012 (1272)
|+..+-..|++++.+||.+ +|..|+..+. ++|..+++.+...
T Consensus 4 Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~~~Rt~~qc~~~~~~ 46 (48)
T PF00249_consen 4 WTEEEDEKLLEAVKKYGKD--NWKKIAKRMPGGRTAKQCRSRYQN 46 (48)
T ss_dssp S-HHHHHHHHHHHHHSTTT--HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc--HHHHHHHHcCCCCCHHHHHHHHHh
Confidence 6777778999999999976 4789999999 9999999977543
No 283
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.37 E-value=3.9 Score=50.52 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.0
Q ss_pred HHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|...+..+ ...|+.-..|+|||..|..++..+...
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 3444444444443 357899999999999998888877543
No 284
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.17 E-value=5 Score=50.82 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCC--Cc-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~--~~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+..+ .+ .|+.-..|+|||..|..++..+...
T Consensus 18 q~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 18 QEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 445555555554544 23 4789999999999999999888753
No 285
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.05 E-value=4 Score=51.15 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 292 egv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
..++.|...+..++ ..|+.-+.|+|||..|..++..+..
T Consensus 23 ~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 23 HALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 33444444444433 3578999999999999999988864
No 286
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.04 E-value=3.8 Score=52.02 Aligned_cols=42 Identities=21% Similarity=0.188 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-..+..|...+..++ ..||.-..|+|||..|..++..|...
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 4444444545444443 57889999999999999999988754
No 287
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=86.01 E-value=4.5 Score=42.47 Aligned_cols=44 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhhCCC
Q 000811 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGERI 333 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~~~~ 333 (1272)
|.+.+..|...+.+++ + -|+..+.|.||+..|..++..++....
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~ 48 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNP 48 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCC
Confidence 5556666666666542 3 488889999999999999999987543
No 288
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.92 E-value=3.6 Score=50.87 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.5
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.||.-+.|+|||..|-+++..+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhccc
Confidence 5899999999999999888887543
No 289
>PF13173 AAA_14: AAA domain
Probab=85.49 E-value=3.9 Score=40.94 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=21.4
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHh
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLF 329 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~ 329 (1272)
++-.+|.-..|.|||..+..++..+.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 45578889999999998888887765
No 290
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=85.48 E-value=1.7 Score=34.21 Aligned_cols=42 Identities=12% Similarity=0.388 Sum_probs=35.6
Q ss_pred CChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHH
Q 000811 969 FSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGIL 1012 (1272)
Q Consensus 969 F~~~~rr~Fv~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~l 1012 (1272)
|+..+...|++++.+||.. +|..|+..+.++|..+|+.|...
T Consensus 2 Wt~eE~~~l~~~~~~~g~~--~w~~Ia~~~~~rs~~~~~~~~~~ 43 (45)
T cd00167 2 WTEEEDELLLEAVKKYGKN--NWEKIAKELPGRTPKQCRERWRN 43 (45)
T ss_pred CCHHHHHHHHHHHHHHCcC--CHHHHHhHcCCCCHHHHHHHHHH
Confidence 6777888999999999963 47789999999999999988654
No 291
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.30 E-value=4.6 Score=48.23 Aligned_cols=44 Identities=11% Similarity=0.104 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 289 YQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 289 yQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
-|-.++..|...+..++ .-++.-..|+|||..|.+|+..++...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 35566666666666653 467899999999999999999998643
No 292
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=85.24 E-value=6 Score=48.72 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=28.4
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecCccH
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTL 345 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~sll 345 (1272)
...+|.-+.|+|||..+-++...+.....+ .++.+.....+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 347899999999999998888887765433 34444333333
No 293
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=85.16 E-value=6.6 Score=46.00 Aligned_cols=48 Identities=15% Similarity=0.295 Sum_probs=39.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
.++|+|......|...+..++ ..++....|+||+..|.+|+..+....
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 588999999888877766554 356899999999999999999988654
No 294
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=85.13 E-value=0.77 Score=54.23 Aligned_cols=64 Identities=27% Similarity=0.560 Sum_probs=44.7
Q ss_pred ccccccccCC-----CCceeecCCCCCccccCcCCCCC-CCCCC-------CCCcCCcCCCCCcccccccccccccCccC
Q 000811 50 KDDSCQACGE-----SENLMSCDTCTYAYHAKCLVPPL-KAPPS-------GSWRCPECVSPLNDIDKILDCEMRPTVAG 116 (1272)
Q Consensus 50 ~~~~C~~C~~-----~~~ll~Cd~C~~~~H~~Cl~P~l-~~~p~-------~~W~C~~C~~~~~~iekil~~R~rp~~~~ 116 (1272)
...+|.||-. .|+++.||.|+-..|-.|.--.- .++|+ ..|||..|...... =+|.++|...+
T Consensus 118 k~~iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~Gvs~----P~CElCPn~~G 193 (707)
T KOG0957|consen 118 KAVICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYGVSL----PHCELCPNRFG 193 (707)
T ss_pred cceEEEEeecCccccccceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcCCCC----CccccCCCcCC
Confidence 3358999964 36699999999999999984320 12232 46999999975432 35777887665
Q ss_pred C
Q 000811 117 D 117 (1272)
Q Consensus 117 ~ 117 (1272)
.
T Consensus 194 i 194 (707)
T KOG0957|consen 194 I 194 (707)
T ss_pred c
Confidence 4
No 295
>PF13245 AAA_19: Part of AAA domain
Probab=85.02 E-value=2.3 Score=38.70 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=33.3
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhC---CCCcEEEEecCccHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGE---RISPHLVVAPLSTLRN 347 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~---~~~p~LIVvP~sll~q 347 (1272)
+.-.++.-..|+|||.+++..+.++... ...++||++|.....+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 3445668999999999999988888742 2348999999765533
No 296
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.90 E-value=4.1 Score=48.47 Aligned_cols=45 Identities=24% Similarity=0.243 Sum_probs=32.6
Q ss_pred CcHHHHHHHH-HHHHhhc--CCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 286 LHPYQLEGLN-FLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 286 Lr~yQlegv~-wL~~~~~--~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
=|+.|++.+. ++..... ...+.+|.-+.|+|||..+-.++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3788888874 4433222 2356889999999999999888887754
No 297
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=84.86 E-value=6.2 Score=47.86 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=26.3
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEe
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVA 340 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVv 340 (1272)
..+|.-..|+|||..+-++...+.....+ .++.+.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46799999999999998888887765433 455543
No 298
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.62 E-value=3.5 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.243 Sum_probs=24.8
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
.+|.-.+|.|||.++.=+++++...+ .++.+|+-
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~-~~v~lis~ 37 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKG-KKVALISA 37 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEE
T ss_pred EEEECCCCCchHhHHHHHHHHHhhcc-ccceeecC
Confidence 46788999999999988888887663 35555554
No 299
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=84.32 E-value=3.9 Score=52.92 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=88.0
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-CccHHHHHHHHHHHCCCCeEEE
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-LSTLRNWEREFATWAPQMNVVM 363 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~sll~qW~~E~~~~~p~~~vv~ 363 (1272)
.|-.-|++|+.-. +....-.++---.|+|||.+..+++..|...+ +.+|+.+= .+.+.|-.--+..+. +. ++
T Consensus 669 ~LN~dQr~A~~k~---L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~g-kkVLLtsyThsAVDNILiKL~~~~--i~-~l 741 (1100)
T KOG1805|consen 669 RLNNDQRQALLKA---LAAEDYALILGMPGTGKTTTISLLIKILVALG-KKVLLTSYTHSAVDNILIKLKGFG--IY-IL 741 (1100)
T ss_pred hcCHHHHHHHHHH---HhccchheeecCCCCCchhhHHHHHHHHHHcC-CeEEEEehhhHHHHHHHHHHhccC--cc-ee
Confidence 5888999997433 23333445555589999988888888877665 35666655 566777766665543 11 33
Q ss_pred EEcChhHH-HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCC
Q 000811 364 YVGTSQAR-NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN 442 (1272)
Q Consensus 364 ~~G~~~~r-~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn 442 (1272)
-.|....- ..++++... ...... -+..-........||.+|.--+. ...|....||++|||||-.+.-
T Consensus 742 RLG~~~kih~~v~e~~~~-~~~s~k--------s~~~l~~~~~~~~IVa~TClgi~--~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLT-NETSEK--------SYADLKKFLDQTSIVACTCLGIN--HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred ecCCccccchHHHHHhcc-cccchh--------hHHHHHHHhCCCcEEEEEccCCC--chhhhccccCEEEEcccccccc
Confidence 33544322 223332210 000000 00000001123346666653332 3445566799999999976532
Q ss_pred cchHHHHHHHhcccccEEEEeccCCC
Q 000811 443 KDSKLFSSLKQYSTRHRVLLTGTPLQ 468 (1272)
Q Consensus 443 ~~S~~~~~l~~l~~~~rllLTGTPlq 468 (1272)
+ -.|--+....+..|-|-+.|
T Consensus 811 P-----~~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 811 P-----LCLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred c-----hhhhhhhhcceEEEeccccc
Confidence 2 23444556677888887654
No 300
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.31 E-value=3.7 Score=52.20 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-..+..|...+..++ + .|+.-..|+|||..+..++..|...
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4445555555544443 3 4889999999999999999888753
No 301
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=84.01 E-value=8.3 Score=48.75 Aligned_cols=129 Identities=14% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecC-ccHHHHHHH----HHHHCCCCeEEEEEcChhHHHHHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STLRNWERE----FATWAPQMNVVMYVGTSQARNIIRE 376 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~-sll~qW~~E----~~~~~p~~~vv~~~G~~~~r~~i~~ 376 (1272)
+.+-.+..-.==-|||..+.+.+..+.....+ .+++++|. ++...--.| +++|+|...+....|. .| .
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-----~I-~ 326 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-----TI-S 326 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-----EE-E
Confidence 34445666677789999877777766544333 88999994 554444444 4567765433232331 11 1
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCCcchHHHHHH--Hhc
Q 000811 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSL--KQY 454 (1272)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l--~~l 454 (1272)
+ .++.. .+--+...|- .....++...++++||||||-++... +...+ ...
T Consensus 327 i--~f~nG--------------------~kstI~FaSa----rntNsiRGqtfDLLIVDEAqFIk~~a--l~~ilp~l~~ 378 (738)
T PHA03368 327 F--SFPDG--------------------SRSTIVFASS----HNTNGIRGQDFNLLFVDEANFIRPDA--VQTIMGFLNQ 378 (738)
T ss_pred E--EecCC--------------------CccEEEEEec----cCCCCccCCcccEEEEechhhCCHHH--HHHHHHHHhc
Confidence 1 11110 0112333211 23445777799999999999997532 22222 122
Q ss_pred ccccEEEEecc
Q 000811 455 STRHRVLLTGT 465 (1272)
Q Consensus 455 ~~~~rllLTGT 465 (1272)
.....|.+|.|
T Consensus 379 ~n~k~I~ISS~ 389 (738)
T PHA03368 379 TNCKIIFVSST 389 (738)
T ss_pred cCccEEEEecC
Confidence 24456777755
No 302
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.00 E-value=6 Score=50.40 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhhcCCC--c-eEEEeCCCChHHHHHHHHHHHHhh
Q 000811 290 QLEGLNFLRFSWSKQT--H-VILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~-~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
|-..+..|...+..+. + .|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4555566655555543 2 388999999999999999988864
No 303
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=83.88 E-value=7 Score=51.24 Aligned_cols=60 Identities=13% Similarity=0.024 Sum_probs=44.1
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHH
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~ 346 (1272)
+..|.+-|.+++..+. ..+.-++|....|+|||.+.-+++..+...+ .++++++|+....
T Consensus 350 ~~~Ls~~Q~~Av~~i~---~s~~~~il~G~aGTGKTtll~~i~~~~~~~g-~~V~~~ApTg~Aa 409 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVT---GSGDIAVVVGRAGTGKSTMLKAAREAWEAAG-YRVIGAALSGKAA 409 (744)
T ss_pred cCCCCHHHHHHHHHHh---cCCCEEEEEecCCCCHHHHHHHHHHHHHhCC-CeEEEEeCcHHHH
Confidence 4578999999998763 2245678999999999988766665554432 4788889976553
No 304
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=83.87 E-value=4.5 Score=47.67 Aligned_cols=76 Identities=24% Similarity=0.256 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhhcCC--Cce-EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEEE
Q 000811 289 YQLEGLNFLRFSWSKQ--THV-ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYV 365 (1272)
Q Consensus 289 yQlegv~wL~~~~~~~--~~~-ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~ 365 (1272)
.|...+..|...+..+ .++ ++.-+.|.|||..|..++..+........ .|-..+.....-.....|+++.+...
T Consensus 10 ~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~---~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 10 LQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGV---EPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCC---CCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 3555556666665544 234 88999999999999999998875431110 02222333333333445666666554
Q ss_pred cC
Q 000811 366 GT 367 (1272)
Q Consensus 366 G~ 367 (1272)
|.
T Consensus 87 ~~ 88 (329)
T PRK08058 87 GQ 88 (329)
T ss_pred cc
Confidence 43
No 305
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.75 E-value=5.9 Score=49.39 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~~-ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|......+. +. ++.-+.|+|||..+.+++..+...
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4444555544444443 33 899999999999999999888653
No 306
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=83.49 E-value=2 Score=34.41 Aligned_cols=45 Identities=16% Similarity=0.458 Sum_probs=37.5
Q ss_pred CCChHHHHHHHHHHHhcCCCccchhhhchhhcCCCHHHHHHHHHHHH
Q 000811 968 GFSQNQRAAFVQILMRFGVGDFDWKEFTPRLKQKSYEEIREYGILFL 1014 (1272)
Q Consensus 968 GF~~~~rr~Fv~a~~kyG~~~~~~~~i~~el~~Ks~~Evk~Y~~lF~ 1014 (1272)
.|+..+...|++++.+||.. +|..|+..+.++|..+++.+...++
T Consensus 3 ~Wt~~E~~~l~~~~~~~g~~--~w~~Ia~~~~~rt~~~~~~~~~~~~ 47 (49)
T smart00717 3 EWTEEEDELLIELVKKYGKN--NWEKIAKELPGRTAEQCRERWNNLL 47 (49)
T ss_pred CCCHHHHHHHHHHHHHHCcC--CHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 47778888999999999964 4678999999999999998866543
No 307
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=83.43 E-value=14 Score=46.61 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=74.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecch----hhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEE
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQ----HMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~----~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfL 681 (1272)
.|||..+..-.+-...+.|..+.+-+..- ...+-+.++|..-|+.+..++|++.+..|.+++.+-.++..+ ++
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~---iv 369 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEID---IV 369 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCC---EE
Confidence 47776554433344456788888877752 356678888888899999999999999999999999765555 88
Q ss_pred eecccc-ccccCccCCCEEEEecC
Q 000811 682 LSTRAG-GLGINLATADTVIIYDS 704 (1272)
Q Consensus 682 lSTrag-g~GINL~~Ad~VIi~D~ 704 (1272)
+.|.|+ -..+++...-.||+=+.
T Consensus 370 VGTHALiQd~V~F~~LgLVIiDEQ 393 (677)
T COG1200 370 VGTHALIQDKVEFHNLGLVIIDEQ 393 (677)
T ss_pred EEcchhhhcceeecceeEEEEecc
Confidence 999996 77889888888877554
No 308
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=83.31 E-value=1 Score=38.69 Aligned_cols=41 Identities=29% Similarity=0.493 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHHHHhcCCCCC
Q 000811 1084 WKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFIN 1129 (1272)
Q Consensus 1084 w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~ 1129 (1272)
||.+||..|+.++.+||. +|..|-.-. ..+....+..++.+
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l----~~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAEHL----GNRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHHHS----TTS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHHHH----CcCCHHHHHHHHHH
Confidence 999999999999999995 799885542 24555555556655
No 309
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=82.74 E-value=6.8 Score=46.93 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1272)
..+.-.+|.-++|.|||..++.++..+...+ +++|+|.-.....+......
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g-~~VlYvs~EEs~~qi~~Ra~ 130 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRG-GKVLYVSGEESPEQIKLRAD 130 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCcCHHHHHHHHH
Confidence 3455578899999999999998888776543 47888876555555444333
No 310
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=82.65 E-value=8.2 Score=48.25 Aligned_cols=95 Identities=13% Similarity=0.169 Sum_probs=72.6
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEee
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlS 683 (1272)
..|||..+...++....+.|.+|||.+........+.+.|... |..+..++|.++..+|..+..+-..+... |++.
T Consensus 6 TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~---IVVG 82 (505)
T TIGR00595 6 TGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEIL---VVIG 82 (505)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCC---EEEC
Confidence 4689999988888888888999999999988777777777543 67899999999999998877766543333 6778
Q ss_pred ccccccccCccCCCEEEEec
Q 000811 684 TRAGGLGINLATADTVIIYD 703 (1272)
Q Consensus 684 Tragg~GINL~~Ad~VIi~D 703 (1272)
|++.- =+-+.....||+-+
T Consensus 83 Trsal-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSAL-FLPFKNLGLIIVDE 101 (505)
T ss_pred ChHHH-cCcccCCCEEEEEC
Confidence 87632 23456677777765
No 311
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=82.37 E-value=7.1 Score=48.08 Aligned_cols=44 Identities=16% Similarity=0.005 Sum_probs=29.5
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecCccHHHH
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~sll~qW 348 (1272)
...+|.-+.|+|||..+-++..++.....+ .++.|.+...+...
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~ 186 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKA 186 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHH
Confidence 347799999999998888887777654333 55555554444333
No 312
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.30 E-value=7.3 Score=49.86 Aligned_cols=42 Identities=19% Similarity=0.079 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+..+ ...|+.-+.|+|||..|.+++..+...
T Consensus 21 q~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 21 QEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 444555555555554 345889999999999999999988753
No 313
>KOG1512 consensus PHD Zn-finger protein [General function prediction only]
Probab=82.14 E-value=0.46 Score=52.26 Aligned_cols=61 Identities=15% Similarity=0.306 Sum_probs=40.6
Q ss_pred cccccccCCC---------CceeecCCCCCccccCcCCCCCCC---CCCCCCcCCcCCC-----CCcccccccccccc
Q 000811 51 DDSCQACGES---------ENLMSCDTCTYAYHAKCLVPPLKA---PPSGSWRCPECVS-----PLNDIDKILDCEMR 111 (1272)
Q Consensus 51 ~~~C~~C~~~---------~~ll~Cd~C~~~~H~~Cl~P~l~~---~p~~~W~C~~C~~-----~~~~iekil~~R~r 111 (1272)
...|.+|-++ ..+++|..|.-++|++|+.-+..- +-.-.|.|..|.- .+..-+.++.|-++
T Consensus 258 ~~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~lC~IC~~P~~E~E~~FCD~C 335 (381)
T KOG1512|consen 258 RNERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCELCRICLGPVIESEHLFCDVC 335 (381)
T ss_pred hhhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHhhhccCCcccchheeccccc
Confidence 3568888654 239999999999999999655322 2246799999872 22233456666443
No 314
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=81.86 E-value=11 Score=47.91 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC-ccHHH
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL-STLRN 347 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~-sll~q 347 (1272)
|+=++-++-+...+.+.-.++++ +=|-|||..+..++..+.......++|.+|. ++...
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~ta-PRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~e 231 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATV-PRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLT 231 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEe-ccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHH
Confidence 34445566666666666666555 6899999887666665554222478999994 44433
No 315
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=81.79 E-value=6.8 Score=52.42 Aligned_cols=60 Identities=13% Similarity=-0.028 Sum_probs=41.5
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHH
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLR 346 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~ 346 (1272)
|..|.+-|.+++..+. ..+.-++|.-..|+|||.+.-+++. ++......++.++|+....
T Consensus 344 g~~Ls~eQr~Av~~il---~s~~v~vv~G~AGTGKTT~l~~~~~-~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GLVLSGEQADALAHVT---DGRDLGVVVGYAGTGKSAMLGVARE-AWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CCCCCHHHHHHHHHHh---cCCCeEEEEeCCCCCHHHHHHHHHH-HHHHcCCeEEEecCcHHHH
Confidence 4579999999998663 2234578999999999987544433 3333224788888976543
No 316
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.69 E-value=7.8 Score=48.67 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
|-..+..|...+..+ ...|+.-+.|+|||..|-.++..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 21 QEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334444444333333 23489999999999999999888764
No 317
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=81.68 E-value=2.9 Score=48.15 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-C--CcEEEEecCccH
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-I--SPHLVVAPLSTL 345 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-~--~p~LIVvP~sll 345 (1272)
|.+-|..++++ ..+..++-...|+|||.+.+.-+.++...+ . ..+|+|+++...
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888764 356666777799999999999888887654 2 489999997654
No 318
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=81.52 E-value=0.67 Score=47.85 Aligned_cols=47 Identities=28% Similarity=0.760 Sum_probs=32.9
Q ss_pred cccccCC------CCceeecCCCCCccccCcCCCCCC------CCCCCC--CcCCcCCCCC
Q 000811 53 SCQACGE------SENLMSCDTCTYAYHAKCLVPPLK------APPSGS--WRCPECVSPL 99 (1272)
Q Consensus 53 ~C~~C~~------~~~ll~Cd~C~~~~H~~Cl~P~l~------~~p~~~--W~C~~C~~~~ 99 (1272)
.|.+|+. .|.|+.|.+|..+||..||-|--. .+..++ -.|..|....
T Consensus 1 ~C~~C~~~g~~~~kG~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~~ 61 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKGPLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGIA 61 (175)
T ss_pred CcccccCCCCCccCCCeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcChh
Confidence 3778853 245999999999999999976532 122333 4788888643
No 319
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.40 E-value=0.79 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.862 Sum_probs=25.8
Q ss_pred cccccccCC----CCceeecCCCCCccccCcCCC
Q 000811 51 DDSCQACGE----SENLMSCDTCTYAYHAKCLVP 80 (1272)
Q Consensus 51 ~~~C~~C~~----~~~ll~Cd~C~~~~H~~Cl~P 80 (1272)
...|.+|+. +++++.|..|...||..|+..
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence 357999985 578999999999999999854
No 320
>PRK05580 primosome assembly protein PriA; Validated
Probab=80.96 E-value=10 Score=49.17 Aligned_cols=95 Identities=11% Similarity=0.119 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHh-CCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeec
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTF-KKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLST 684 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~-~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlST 684 (1272)
.|||......++......|.++||.+........+.+.|.. -|..+..++|+++..+|.+.......+... ++++|
T Consensus 172 GSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~---IVVgT 248 (679)
T PRK05580 172 GSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAK---VVIGA 248 (679)
T ss_pred CChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCC---EEEec
Confidence 57898888777877777899999999998887777777754 378899999999999998887777554333 67888
Q ss_pred cccccccCccCCCEEEEecC
Q 000811 685 RAGGLGINLATADTVIIYDS 704 (1272)
Q Consensus 685 ragg~GINL~~Ad~VIi~D~ 704 (1272)
+..- =+.+.....||+-+-
T Consensus 249 rsal-~~p~~~l~liVvDEe 267 (679)
T PRK05580 249 RSAL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred cHHh-cccccCCCEEEEECC
Confidence 7543 255667777877663
No 321
>PRK06893 DNA replication initiation factor; Validated
Probab=80.67 E-value=10 Score=42.19 Aligned_cols=27 Identities=11% Similarity=-0.023 Sum_probs=21.8
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
..+|.-+.|+|||.-+.++...+...+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~ 67 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQ 67 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 358999999999998888887766543
No 322
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=80.47 E-value=2 Score=36.92 Aligned_cols=28 Identities=32% Similarity=0.589 Sum_probs=25.2
Q ss_pred CCCcCHHHHHHHHHHHHhhccCch---HHhh
Q 000811 1081 GKFWKEEHDSLLLRAVLKHGYGRW---QAIV 1108 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~w---e~Ik 1108 (1272)
...||+|+-...|.+|..+|.|.| ..|.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~ 33 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRIL 33 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHH
Confidence 468999999999999999999999 7664
No 323
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=80.46 E-value=8.7 Score=45.12 Aligned_cols=47 Identities=15% Similarity=0.226 Sum_probs=36.8
Q ss_pred CcHHHHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 286 LHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
++|+|...-.-|...+.+++ .-++.-+.|+||+..|.+|+..+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888887777777766643 345789999999999999999987643
No 324
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=80.37 E-value=1.3 Score=46.90 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=25.9
Q ss_pred ccccEEEecHHHHHhhhh--ccC--CCcceeEEeccccccCC
Q 000811 405 IKFDVLLTSYEMINLDSA--SLK--PIKWQCMIVDEGHRLKN 442 (1272)
Q Consensus 405 ~~fdVvItSye~l~~d~~--~L~--~~~w~~vIvDEaHrlKn 442 (1272)
...||||++|..+..... .+. ..+-.+|||||||+|-+
T Consensus 118 ~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 118 KNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 467899999999866422 221 23446899999999854
No 325
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=80.18 E-value=17 Score=43.43 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=28.7
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEec
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP 341 (1272)
..+...+|.-.+|.|||.++..++..+... +..++.+|+.
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~ 175 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT 175 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 456677899999999999998888776433 3335555554
No 326
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=80.08 E-value=8 Score=46.54 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=27.9
Q ss_pred cceeEEeccccccCCcch---HHHHHHHhcc-cccEEEEec--cCCC
Q 000811 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG--TPLQ 468 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S---~~~~~l~~l~-~~~rllLTG--TPlq 468 (1272)
.-++++||..|.+.+... .++..+..+. ....|+||+ +|-+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~ 221 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKE 221 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchh
Confidence 347899999999988743 3444444444 345899998 6633
No 327
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=80.06 E-value=10 Score=46.48 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=27.4
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEec
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAP 341 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP 341 (1272)
...+|.-+.|+|||..+-++...+.....+ .++.|..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 357899999999999988888887765443 4555543
No 328
>PRK04132 replication factor C small subunit; Provisional
Probab=79.73 E-value=5.6 Score=52.26 Aligned_cols=47 Identities=15% Similarity=0.346 Sum_probs=29.7
Q ss_pred cceeEEeccccccCCc-chHHHHHHHhcccccEEEEeccCCCCCHHHH
Q 000811 428 KWQCMIVDEGHRLKNK-DSKLFSSLKQYSTRHRVLLTGTPLQNNLDEL 474 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~-~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL 474 (1272)
++.++||||||++-.. ...+.+.+.......+++|+.++...-+.-|
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tI 677 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPI 677 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHH
Confidence 4678999999999532 2234444444456778888877754433333
No 329
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=79.54 E-value=11 Score=47.77 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.1
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.|+.-+.|+|||..|-.++..+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4679999999999999888887643
No 330
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=79.43 E-value=4.5 Score=50.33 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecC-ccH----HHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPL-STL----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~-sll----~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~ 375 (1272)
.++-.+.|. +=-=|||...+++|..++..-.+ .+..|+-. ++. ..-...+.+|+|.-+++.-.|..-.
T Consensus 201 KQkaTVFLV-PRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~tI~----- 274 (668)
T PHA03372 201 KQKATVFLV-PRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNVIS----- 274 (668)
T ss_pred hccceEEEe-cccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcEEE-----
Confidence 333444443 55678999998888888775444 77888874 333 2334556789987665332221100
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCCcchHHHHHHHhcc
Q 000811 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS 455 (1272)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~ 455 (1272)
+..+ ..+.-++..| ......++.-.|++++|||||-++...-...--+...+
T Consensus 275 ---~s~p---------------------g~Kst~~fas----c~n~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~ 326 (668)
T PHA03372 275 ---IDHR---------------------GAKSTALFAS----CYNTNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQN 326 (668)
T ss_pred ---EecC---------------------CCcceeeehh----hccCccccCCCCCEEEEehhhccCHHHHHHhhhhhccc
Confidence 0011 1111122222 12235677788999999999988754322222223334
Q ss_pred cccEEEEecc
Q 000811 456 TRHRVLLTGT 465 (1272)
Q Consensus 456 ~~~rllLTGT 465 (1272)
....+.+|.|
T Consensus 327 ~~KiIfISS~ 336 (668)
T PHA03372 327 TTKIIFISST 336 (668)
T ss_pred CceEEEEeCC
Confidence 4456666655
No 331
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=78.99 E-value=14 Score=46.82 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=28.6
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCCCC-cEEEEecCccHHHH
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGERIS-PHLVVAPLSTLRNW 348 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~~~-p~LIVvP~sll~qW 348 (1272)
..+|.-..|+|||.-+.++..++.....+ .++.+.-...+..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 37889999999999888888877654323 44544443333333
No 332
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=78.63 E-value=1.5 Score=58.84 Aligned_cols=49 Identities=41% Similarity=1.155 Sum_probs=42.8
Q ss_pred ccccccccCCCCc--eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCC
Q 000811 50 KDDSCQACGESEN--LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 50 ~~~~C~~C~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1272)
....|..|..+.. ++.|+.|...||..|+.|++..++.++|.|+.|...
T Consensus 154 ~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPT 204 (904)
T ss_pred cchhhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCccccc
Confidence 3467999987764 349999999999999999999999999999999865
No 333
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=78.55 E-value=9 Score=49.44 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHHhhcCC--Cc-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~--~~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|......+ .+ .|+.-+.|.|||..|-.++..+...
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 3344444444443 23 4789999999999999998887653
No 334
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=78.46 E-value=15 Score=42.37 Aligned_cols=45 Identities=24% Similarity=0.259 Sum_probs=28.1
Q ss_pred hccCCCcceeEEecccccc-CCcchHHHH---HHHhccccc--EEEEeccC
Q 000811 422 ASLKPIKWQCMIVDEGHRL-KNKDSKLFS---SLKQYSTRH--RVLLTGTP 466 (1272)
Q Consensus 422 ~~L~~~~w~~vIvDEaHrl-Kn~~S~~~~---~l~~l~~~~--rllLTGTP 466 (1272)
..|+.+.-.++||||.|++ .+...+... +|+.+.... -+.+.||+
T Consensus 139 ~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 139 RLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4567778889999999996 444444333 344443332 35666776
No 335
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.32 E-value=8.8 Score=48.75 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 294 LNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 294 v~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+..|...+.++ ...|+.-+.|+|||..|..++..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44444444443 34567999999999999999988864
No 336
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=78.32 E-value=3.2 Score=44.36 Aligned_cols=47 Identities=19% Similarity=0.236 Sum_probs=32.6
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1272)
.++.|.+|...+|+|||..|.+++..+...+ .+++++.- ..+..+++
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g-~~v~f~~~----~~L~~~l~ 91 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKG-YSVLFITA----SDLLDELK 91 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH----HHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCC-cceeEeec----Cceecccc
Confidence 5678899999999999999999999888754 35666543 34445554
No 337
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=77.93 E-value=9.4 Score=48.30 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.|+.-+.|.|||..|.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 5799999999999999999888643
No 338
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.66 E-value=13 Score=46.33 Aligned_cols=41 Identities=27% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhcCCC--ce-EEEeCCCChHHHHHHHHHHHHhh
Q 000811 290 QLEGLNFLRFSWSKQT--HV-ILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~--~~-ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
|-..+..|.....++. ++ ++.-+.|.|||..|..++..+..
T Consensus 21 q~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 21 QEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4445555555555543 33 67999999999999888887754
No 339
>PRK11054 helD DNA helicase IV; Provisional
Probab=77.63 E-value=11 Score=48.85 Aligned_cols=76 Identities=16% Similarity=0.104 Sum_probs=54.5
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC---CCcEEEEecCccHHHHHHH-HHHHCC--
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER---ISPHLVVAPLSTLRNWERE-FATWAP-- 357 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~---~~p~LIVvP~sll~qW~~E-~~~~~p-- 357 (1272)
..|.+.|.++|.. ..++.++....|+|||.+.++-+.+|...+ +..+|+++.+....+..++ +....+
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4589999999852 234556666799999999999999988643 2389999998877776665 555553
Q ss_pred CCeEEEEE
Q 000811 358 QMNVVMYV 365 (1272)
Q Consensus 358 ~~~vv~~~ 365 (1272)
.+.+-.||
T Consensus 269 ~v~v~TFH 276 (684)
T PRK11054 269 DITARTFH 276 (684)
T ss_pred CcEEEeHH
Confidence 23344444
No 340
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=77.54 E-value=7.7 Score=43.96 Aligned_cols=66 Identities=23% Similarity=0.239 Sum_probs=46.8
Q ss_pred cHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHH
Q 000811 287 HPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 287 r~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1272)
.-.++..+.-+...+.++.+.+|.-.+|+|||..++|+...+... ..+++++.-..++.+++..+.
T Consensus 88 ~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 88 DKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred hHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHHHh
Confidence 335555554444444688999999999999999999999999833 236777665666666555543
No 341
>PRK05642 DNA replication initiation factor; Validated
Probab=77.48 E-value=10 Score=42.43 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=24.9
Q ss_pred eeEEeccccccCCcc---hHHHHHHHhcc-cccEEEEecc
Q 000811 430 QCMIVDEGHRLKNKD---SKLFSSLKQYS-TRHRVLLTGT 465 (1272)
Q Consensus 430 ~~vIvDEaHrlKn~~---S~~~~~l~~l~-~~~rllLTGT 465 (1272)
++||||+.|.+.+.. ..++..+..+. ...++++|+|
T Consensus 99 d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 99 ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 579999999886543 33555555544 3567888887
No 342
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=76.90 E-value=13 Score=48.44 Aligned_cols=97 Identities=16% Similarity=0.209 Sum_probs=71.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHH----HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEE
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLD----LLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ld----iL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfL 681 (1272)
.|||..+..-.+-.....|.+++|.+....... .+..++...|+++..++|+++..+|..++.....+... ++
T Consensus 292 GSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~---Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEAD---IV 368 (681)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCC---EE
Confidence 578877654444444467899999999876544 55556666689999999999999999999988765444 66
Q ss_pred eeccc-cccccCccCCCEEEEecCC
Q 000811 682 LSTRA-GGLGINLATADTVIIYDSD 705 (1272)
Q Consensus 682 lSTra-gg~GINL~~Ad~VIi~D~d 705 (1272)
++|.+ ....+.+.....||+=+.+
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 77765 4556778888888876554
No 343
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=76.81 E-value=12 Score=41.83 Aligned_cols=51 Identities=27% Similarity=0.329 Sum_probs=32.4
Q ss_pred cCCC-ceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH------HHHHHHHHH
Q 000811 302 SKQT-HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL------RNWEREFAT 354 (1272)
Q Consensus 302 ~~~~-~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll------~qW~~E~~~ 354 (1272)
..++ -+.+.-+.|+|||+..=+++..+-.. ...+|+.|+.++ .-|..++..
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d--~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED--QVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC--ceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 3444 45688899999999887555554322 245578887665 335555543
No 344
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.71 E-value=16 Score=46.49 Aligned_cols=40 Identities=20% Similarity=0.216 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCC--Cc-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQ--TH-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~--~~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|......+ .+ .|+.-+-|+|||..+..++..+...
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 3334444433443 23 4789999999999999999888653
No 345
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=76.69 E-value=10 Score=46.30 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=27.1
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
...+++-.+|.|||.++..++.++...+..+.||-+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 3467889999999999998888887665434444443
No 346
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.67 E-value=13 Score=47.40 Aligned_cols=42 Identities=19% Similarity=0.153 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|...+..|...+.++ ..-|+....|.|||..|..++..+...
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 555666666666554 235789999999999999999888653
No 347
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=76.43 E-value=12 Score=44.21 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.2
Q ss_pred CcHHHHHHHHHHHHhhcCCC-ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 286 LHPYQLEGLNFLRFSWSKQT-HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~-~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
++|+|...-+-|...-.+-. ..++....|.|||..|..|+..+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 46777777666655422323 345788999999999999999987654
No 348
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=76.40 E-value=9.8 Score=46.75 Aligned_cols=36 Identities=25% Similarity=0.149 Sum_probs=26.7
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
...+|.-+.|+|||..+-++...+...+ .+++.+..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~-~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESG-GKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcC-CCEEEeeH
Confidence 4578999999999999888888876543 35555543
No 349
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=76.29 E-value=12 Score=48.49 Aligned_cols=111 Identities=21% Similarity=0.249 Sum_probs=87.9
Q ss_pred EeecCCHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCcccccCCCCCcccchHHHHHHHhhhhHHHHHHH
Q 000811 536 LRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDTNESFKQLLESSGKLQLLDK 615 (1272)
Q Consensus 536 v~v~ls~~Q~~~Y~~il~~~~~~l~~~~~~~~~l~~~l~~Lrk~c~hP~L~~~~e~~~~~~~~~~~~li~~S~Kl~~L~k 615 (1272)
....++..|...+..|.... -+.+++|+.++ ..|||.++...
T Consensus 195 ~~~~Ln~~Q~~a~~~i~~~~-----------------------~~~~~~Ll~Gv---------------TGSGKTEvYl~ 236 (730)
T COG1198 195 EWLALNQEQQAAVEAILSSL-----------------------GGFAPFLLDGV---------------TGSGKTEVYLE 236 (730)
T ss_pred cccccCHHHHHHHHHHHHhc-----------------------ccccceeEeCC---------------CCCcHHHHHHH
Confidence 34578888888888775431 24577887764 36999999999
Q ss_pred HHHHHHHcCceEEEEecchhhHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecccc
Q 000811 616 MMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-KWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG 687 (1272)
Q Consensus 616 lL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~-g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTrag 687 (1272)
++....++|+.|||...-+.....+.+.|..+ |.++..++++.+..+|.....+...+.. .+++.||++
T Consensus 237 ~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~---~vVIGtRSA 306 (730)
T COG1198 237 AIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEA---RVVIGTRSA 306 (730)
T ss_pred HHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCc---eEEEEechh
Confidence 99999999999999999988777777777554 7899999999999999998888865433 467777764
No 350
>PRK04195 replication factor C large subunit; Provisional
Probab=76.21 E-value=20 Score=44.56 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=29.4
Q ss_pred CcHHHHHHH-HHHHHhhcC---CCceEEEeCCCChHHHHHHHHHHHH
Q 000811 286 LHPYQLEGL-NFLRFSWSK---QTHVILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 286 Lr~yQlegv-~wL~~~~~~---~~~~ILaDemGlGKTiqaia~l~~l 328 (1272)
.++.++..+ .|+ ..|.+ ....+|.-+.|+|||..+-+++..+
T Consensus 18 g~~~~~~~l~~~l-~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 18 GNEKAKEQLREWI-ESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCHHHHHHHHHHH-HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 455555555 344 34444 4678999999999999888777765
No 351
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=75.92 E-value=0.9 Score=41.96 Aligned_cols=43 Identities=28% Similarity=0.704 Sum_probs=29.5
Q ss_pred ccccCCCCc---eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCC
Q 000811 54 CQACGESEN---LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 54 C~~C~~~~~---ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1272)
|..|.-+|+ ++.+ .|...||+.|+.-.+... ...=.||-|..+
T Consensus 35 Cp~Ck~Pgd~Cplv~g-~C~H~FH~hCI~kWl~~~-~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDCPLVWG-KCSHNFHMHCILKWLSTQ-SSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCCceeec-cCccHHHHHHHHHHHccc-cCCCCCCCcCCe
Confidence 444444444 4444 499999999998888764 234489999864
No 352
>PRK13342 recombination factor protein RarA; Reviewed
Probab=75.41 E-value=14 Score=45.00 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.4
Q ss_pred CceEEEeCCCChHHHHHHHHHHHH
Q 000811 305 THVILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l 328 (1272)
.+.||.-+.|+|||..+-++...+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~ 60 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGAT 60 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999998887766543
No 353
>KOG3612 consensus PHD Zn-finger protein [General function prediction only]
Probab=75.38 E-value=2 Score=51.78 Aligned_cols=50 Identities=22% Similarity=0.390 Sum_probs=41.2
Q ss_pred cccccccccCCCCceeecCCCCCccccCcCCCCCCCCC-CCCCcCCcCCCC
Q 000811 49 AKDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPP-SGSWRCPECVSP 98 (1272)
Q Consensus 49 ~~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~p-~~~W~C~~C~~~ 98 (1272)
..+.+|..|.-.|..+.|+.|-|+||..|+.|.-.... ...|.||.|.+.
T Consensus 58 N~d~~cfechlpg~vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s~ 108 (588)
T KOG3612|consen 58 NIDPFCFECHLPGAVLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYSF 108 (588)
T ss_pred CCCcccccccCCcceeeeehhhccccccccCcchhhccccccccCCccccc
Confidence 45688999999999999999999999999987643322 456999999864
No 354
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=74.88 E-value=22 Score=45.01 Aligned_cols=40 Identities=18% Similarity=0.089 Sum_probs=28.2
Q ss_pred HHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+..|...+.++ +..|+.-+.|+|||..|..++..+...
T Consensus 23 ~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 23 LIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3344444444443 335789999999999999999988654
No 355
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=74.84 E-value=15 Score=44.26 Aligned_cols=46 Identities=22% Similarity=0.202 Sum_probs=32.0
Q ss_pred cHHHHHHHHHHH-Hhhc--CCCceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 287 HPYQLEGLNFLR-FSWS--KQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 287 r~yQlegv~wL~-~~~~--~~~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
|+-|+.-+.-.. .... ...+++|.-..|+|||..+-.++..+....
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 566666654332 3222 335689999999999999988888876543
No 356
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=74.52 E-value=5.6 Score=43.65 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
-.+.|++...|.|||..+.+++..|+.
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 457899999999999999998888864
No 357
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=74.41 E-value=19 Score=42.13 Aligned_cols=48 Identities=15% Similarity=0.178 Sum_probs=38.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
.++|+|...-..|...+..++ .-++....|+||+..|..|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 477888888877777765554 457889999999999999999987654
No 358
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=74.25 E-value=25 Score=40.19 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-C---ccHHHHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~---sll~qW~~ 350 (1272)
.+....+.-..|.|||..+..++..+...+ ..+.+|.- . ..+.||..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~ 124 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQD 124 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHH
Confidence 345667888899999998877776665433 34444443 2 34556653
No 359
>KOG1473 consensus Nucleosome remodeling factor, subunit NURF301/BPTF [Chromatin structure and dynamics; Transcription]
Probab=74.16 E-value=0.66 Score=59.84 Aligned_cols=51 Identities=22% Similarity=0.258 Sum_probs=41.8
Q ss_pred ccccccccccCCCCceeecCC-CCCcccc-CcCCCC--CCCCCCCCCcCCcCCCC
Q 000811 48 DAKDDSCQACGESENLMSCDT-CTYAYHA-KCLVPP--LKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 48 ~~~~~~C~~C~~~~~ll~Cd~-C~~~~H~-~Cl~P~--l~~~p~~~W~C~~C~~~ 98 (1272)
......|.+|+..+.++||++ |+.+||+ .||+-. -...+++-|.|++|.-.
T Consensus 425 wfi~rrl~Ie~~det~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~r 479 (1414)
T KOG1473|consen 425 WFISRRLRIEGMDETLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIR 479 (1414)
T ss_pred hceeeeeEEecCCCcEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHH
Confidence 345677999999999999987 9999999 999732 34578899999999753
No 360
>PRK11823 DNA repair protein RadA; Provisional
Probab=73.65 E-value=18 Score=44.45 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=38.0
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
..+.-.+|.-++|.|||..++.++..+... ..++|.|.-.....+......++
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ees~~qi~~ra~rl 130 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEESASQIKLRAERL 130 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccccHHHHHHHHHHc
Confidence 345556889999999999999988877643 24788888766666655444443
No 361
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=73.57 E-value=23 Score=46.49 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=31.5
Q ss_pred CcHHHHHHHHH-HHHhhcC-CC-ceE-EEeCCCChHHHHHHHHHHHHhh
Q 000811 286 LHPYQLEGLNF-LRFSWSK-QT-HVI-LADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 286 Lr~yQlegv~w-L~~~~~~-~~-~~I-LaDemGlGKTiqaia~l~~l~~ 330 (1272)
=|+-|+..|.. |...... +. ++| |.-.+|+|||.++-.++..|..
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqe 807 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQH 807 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57788888754 4444432 22 343 8999999999999988877753
No 362
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=73.51 E-value=3.1 Score=54.15 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=71.2
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhh-CCCCcEEEEecCccH-----HHHHHHHHHHCCCCeEEEEEcChhHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAPLSTL-----RNWEREFATWAPQMNVVMYVGTSQARNIIR 375 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~-~~~~p~LIVvP~sll-----~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~ 375 (1272)
+...+.++.+.+|.|||+.+-..+.+... ...+++.+|+|...+ ..|..-+.. |+.+++-..|+....
T Consensus 941 ~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~pd---- 1014 (1230)
T KOG0952|consen 941 HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTPD---- 1014 (1230)
T ss_pred ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCCC----
Confidence 45667889999999999998555544444 444699999995433 456554432 466666666554221
Q ss_pred HhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCC----cceeEEeccccccCCc
Q 000811 376 EYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPI----KWQCMIVDEGHRLKNK 443 (1272)
Q Consensus 376 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~----~w~~vIvDEaHrlKn~ 443 (1272)
.......+++|||++..-......... .+..+|+||.|.++..
T Consensus 1015 -------------------------~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 -------------------------VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------------------------hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 012246689999999875443322222 2456999999988654
No 363
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=73.22 E-value=15 Score=43.42 Aligned_cols=47 Identities=15% Similarity=0.150 Sum_probs=37.8
Q ss_pred CCcHHHHHHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.++|+|...-..|...+..++ .-+++-+.|+||+..|.+|+.++.-.
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877777766643 34689999999999999999999764
No 364
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=73.20 E-value=1.8 Score=56.96 Aligned_cols=39 Identities=33% Similarity=0.842 Sum_probs=28.8
Q ss_pred HHHHhhccCCCcccccccChHhHHHHhhcChhHHHHHHhhhhhcc
Q 000811 131 KQYLVKWKGLSYLHCTWVPEKEFLKAFKSNPRLRTKVNNFHRQMS 175 (1272)
Q Consensus 131 ~eYlVKWkg~Sy~h~tWvpe~~L~~~~~~~~~~k~kl~~f~k~~~ 175 (1272)
.+|||||+|.+|-.|||+.++.+.... ..-+..|+-+..
T Consensus 300 ~eYLvKW~~LpY~e~TWE~~~~I~~~~------~~~~~~~~~Re~ 338 (1373)
T KOG0384|consen 300 PEYLVKWRGLPYEECTWEDAEDIAKKA------QEEIEEFQSREN 338 (1373)
T ss_pred ceeEEEecCCCcccccccchhhhhhhH------HHHHHHHhhhhc
Confidence 699999999999999999998775321 123556655543
No 365
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=72.97 E-value=35 Score=42.59 Aligned_cols=38 Identities=16% Similarity=0.194 Sum_probs=25.7
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCC-CcEEEEe
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERI-SPHLVVA 340 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~-~p~LIVv 340 (1272)
.++...|.-.+|.|||..+..++..+...+. ..+.+|.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4555667888999999998777776654432 3455443
No 366
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=72.76 E-value=24 Score=37.78 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.8
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
...+|..+.|.|||..+..++..+...
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~ 41 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCE 41 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 346789999999999999999988754
No 367
>PRK10865 protein disaggregation chaperone; Provisional
Probab=72.68 E-value=14 Score=49.28 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHhh--cCCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 294 LNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 294 v~wL~~~~--~~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+..++..+ ....+.||.-+.|.|||..+-+++..+..
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 55555533 34568999999999999999888887654
No 368
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.30 E-value=6.9 Score=38.59 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=24.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll 345 (1272)
+|.-+.|.|||..+-.++..+. .+++.+....+.
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~----~~~~~i~~~~~~ 35 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLG----FPFIEIDGSELI 35 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTT----SEEEEEETTHHH
T ss_pred EEECcCCCCeeHHHHHHHhhcc----cccccccccccc
Confidence 6778999999999888877762 256666665554
No 369
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=72.07 E-value=14 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.220 Sum_probs=19.2
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLAS 327 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~ 327 (1272)
.-.+.||.-..|+|||..|-.+..+
T Consensus 47 ~l~SmIl~GPPG~GKTTlA~liA~~ 71 (436)
T COG2256 47 HLHSMILWGPPGTGKTTLARLIAGT 71 (436)
T ss_pred CCceeEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999876555554
No 370
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=71.65 E-value=12 Score=43.57 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=24.9
Q ss_pred CCCc-eEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 303 KQTH-VILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 303 ~~~~-~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
+... .+|..+.|+|||..|.+++..+....
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 4455 78899999999999999999998653
No 371
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.53 E-value=2.2 Score=49.65 Aligned_cols=44 Identities=27% Similarity=0.637 Sum_probs=35.5
Q ss_pred ccccccCC---CCceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCC
Q 000811 52 DSCQACGE---SENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 52 ~~C~~C~~---~~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1272)
+.|.+|-+ .|+.|+-=-|...||-.|.+|.|... .=+||-|+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~---r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT---RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc---CccCCCCCCc
Confidence 68999986 46666667899999999999998763 3379999973
No 372
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=70.79 E-value=7.2 Score=48.29 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=38.1
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCC-----CCcEEEEecCccHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAPLSTLRNWER 350 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-----~~p~LIVvP~sll~qW~~ 350 (1272)
..++-.|+--..|+|||..|+--+++|+... .+|+||+.|+-++.....
T Consensus 224 ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 224 EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 3555677888999999999988888887643 248999999988765543
No 373
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=70.53 E-value=20 Score=46.26 Aligned_cols=97 Identities=18% Similarity=0.224 Sum_probs=69.2
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHH----HHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEE
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDL----LEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldi----L~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfL 681 (1272)
.|||..+..-.+-.....|.+++|.+.......- +..++...|+++..++|+++..+|..++....++... ++
T Consensus 266 GSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~---Ii 342 (630)
T TIGR00643 266 GSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIH---LV 342 (630)
T ss_pred CCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCC---EE
Confidence 5788766443333344578899999988765554 4444555689999999999999999999888765444 66
Q ss_pred eecccc-ccccCccCCCEEEEecCC
Q 000811 682 LSTRAG-GLGINLATADTVIIYDSD 705 (1272)
Q Consensus 682 lSTrag-g~GINL~~Ad~VIi~D~d 705 (1272)
++|.+. -..+.+.....||+=+.+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVIDEaH 367 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVIIDEQH 367 (630)
T ss_pred EecHHHHhccccccccceEEEechh
Confidence 777663 456777788888776654
No 374
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=70.30 E-value=27 Score=47.42 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll 345 (1272)
..|.+-|.+++..+. ..+.-++|.-.-|+|||.+.-++...+...+ ..++.++|..--
T Consensus 380 ~~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G-~~V~g~ApTgkA 437 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAAG-YRVVGGALAGKA 437 (1102)
T ss_pred CCCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEcCcHHH
Confidence 579999999997662 3455678899999999987766555443332 478888887544
No 375
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=70.05 E-value=31 Score=35.04 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=26.4
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
.+|.-..|+|||..+..++..+... .++++++....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~-~~~v~~~~~e~ 37 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK-GGKVVYVDIEE 37 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc-CCEEEEEECCc
Confidence 4677789999999998888877553 34666666543
No 376
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=69.34 E-value=13 Score=46.24 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
...+.+|.-++|+|||..+-+++..+..
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhcc
Confidence 4567899999999999998888887743
No 377
>PTZ00293 thymidine kinase; Provisional
Probab=69.29 E-value=14 Score=40.58 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=25.5
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
-++.-.||+|||...|-.+...... ..+++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~a-g~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTYS-EKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHHc-CCceEEEEecc
Confidence 3568899999998777665544332 35889998853
No 378
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=69.28 E-value=26 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.6
Q ss_pred eEEEeCCCChHHHHHHHHHHHH
Q 000811 307 VILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l 328 (1272)
.++.-..|.|||.++.-++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5578899999999998888755
No 379
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=69.16 E-value=55 Score=35.40 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=39.8
Q ss_pred hhccCCCcceeEEeccccccCCc----chHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHHhhcC
Q 000811 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMHFLDA 483 (1272)
Q Consensus 421 ~~~L~~~~w~~vIvDEaHrlKn~----~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~fL~p 483 (1272)
...+..-.|++||+||.-..-+. ...+...|..-...--|.|||--.+..+.|+..++.-+.+
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ADlVTEm~~ 174 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEAADLVTEMRP 174 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCchheeccc
Confidence 44566678999999998655442 2344555555445567999998655555555555444433
No 380
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=69.13 E-value=16 Score=48.59 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhc--CCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~--~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-+-+..++..+. ...+.||.-+.|.|||..+=+++..+...
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~ 235 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAG 235 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhC
Confidence 3334666655333 35689999999999999987777776543
No 381
>PRK07952 DNA replication protein DnaC; Validated
Probab=69.12 E-value=16 Score=41.25 Aligned_cols=62 Identities=18% Similarity=0.202 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHh---hcC-CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 288 PYQLEGLNFLRFS---WSK-QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 288 ~yQlegv~wL~~~---~~~-~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
+.|..++..+... +.. ..+.+|.-..|+|||..+.+++.++...+ .+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEE----EHHHHHHHHHH
Confidence 3465566554322 222 24678999999999999999999987654 255555 35566666543
No 382
>CHL00095 clpC Clp protease ATP binding subunit
Probab=68.96 E-value=2e+02 Score=38.44 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=21.6
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.+++-++|.|||..|-+++..++..
T Consensus 542 ~lf~Gp~GvGKt~lA~~LA~~l~~~ 566 (821)
T CHL00095 542 FLFSGPTGVGKTELTKALASYFFGS 566 (821)
T ss_pred EEEECCCCCcHHHHHHHHHHHhcCC
Confidence 5789999999999999988887643
No 383
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=68.66 E-value=0.54 Score=42.10 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=19.8
Q ss_pred ccccccCCC----Cc--eeecC--CCCCccccCcCCCCCCCCCC-------CCCcCCcCCCC
Q 000811 52 DSCQACGES----EN--LMSCD--TCTYAYHAKCLVPPLKAPPS-------GSWRCPECVSP 98 (1272)
Q Consensus 52 ~~C~~C~~~----~~--ll~Cd--~C~~~~H~~Cl~P~l~~~p~-------~~W~C~~C~~~ 98 (1272)
..|.+|... +. .+.|+ .|...||..||.-.+...+. -.+.||.|..+
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 458888742 22 58898 89999999999655432211 23579999853
No 384
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=68.36 E-value=33 Score=36.04 Aligned_cols=35 Identities=26% Similarity=0.262 Sum_probs=25.3
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
.++....|.|||..+..++..+...+....+|-++
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 46778999999999999888877664333344444
No 385
>PLN03212 Transcription repressor MYB5; Provisional
Probab=68.35 E-value=4.6 Score=44.71 Aligned_cols=50 Identities=24% Similarity=0.443 Sum_probs=34.7
Q ss_pred CCCcCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHHHHhcCCCCCCCCC
Q 000811 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP 1133 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~ 1133 (1272)
...||.|||-.|+..|.+||-++|..|-.-.. ..+..+....|..+.+.|
T Consensus 25 Rg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g---~gRT~KQCReRW~N~L~P 74 (249)
T PLN03212 25 RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAG---LLRCGKSCRLRWMNYLRP 74 (249)
T ss_pred CCCCCHHHHHHHHHHHHHhCcccHHHHHHhhh---cCCCcchHHHHHHHhhch
Confidence 45799999999999999999999998843210 123344445555555554
No 386
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=68.15 E-value=25 Score=46.20 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=24.2
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
...+.||.-+.|.|||..+-+++..+...
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~ 230 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEG 230 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45689999999999999988888877554
No 387
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=67.92 E-value=24 Score=43.43 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
|-..+.+|......+ ...|+.-+.|+|||..|.+++..+...
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 445566665555544 235789999999999999999988754
No 388
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=67.92 E-value=13 Score=39.38 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=38.2
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
.+++-+.|+|||..++.++......+ .+++++.......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCCHHHHHHHHHHc
Confidence 47889999999999999988876543 4889998877777776666654
No 389
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=67.34 E-value=44 Score=36.96 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=25.6
Q ss_pred cceeEEeccccccCCcch---HHHHHHHhcc-cccEEEEec
Q 000811 428 KWQCMIVDEGHRLKNKDS---KLFSSLKQYS-TRHRVLLTG 464 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S---~~~~~l~~l~-~~~rllLTG 464 (1272)
..++||||..|.+.+... .++..+..+. ...++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 467899999999988653 3444444443 456778777
No 390
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=67.09 E-value=51 Score=38.94 Aligned_cols=40 Identities=18% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcCCC---ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 292 EGLNFLRFSWSKQT---HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 292 egv~wL~~~~~~~~---~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..++-|......+. ..+|.-+.|+|||..+..++..+...
T Consensus 21 ~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 21 HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 33444433334433 35789999999999999988887643
No 391
>PRK06835 DNA replication protein DnaC; Validated
Probab=66.96 E-value=14 Score=43.63 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCCcHHHHHHHHHHH----HhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 284 GSLHPYQLEGLNFLR----FSWSKQTHVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~----~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
+..+.++..++.++. ..-..+.+.+|.-++|+|||..+.+++..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g 211 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRG 211 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence 456667666665432 2222457888999999999999999999887664
No 392
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=66.78 E-value=17 Score=47.33 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=19.6
Q ss_pred CceEEEeCCCChHHHHHHHHHHHH
Q 000811 305 THVILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l 328 (1272)
.+.||.-+.|+|||..+-++...+
T Consensus 53 ~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999998887766543
No 393
>PF01393 Chromo_shadow: Chromo shadow domain Web page maintained by Rein Aasland; InterPro: IPR008251 Chromo shadow domain is distantly related to chromo domain. It is always found in association with a chromo domain. The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain [], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1); and mammalian modifier 1 and modifier 2. The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigenand and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1.; GO: 0005634 nucleus; PDB: 3Q6S_C 2FMM_B 3P7J_B 1E0B_B 3I3C_A 1DZ1_B 1S4Z_A 3KUP_D.
Probab=66.20 E-value=2.6 Score=36.32 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=21.9
Q ss_pred cchhhhhhhccCCCcceEEeeccccc
Q 000811 192 TTVDRILACRGEDDEKEYLVKYKELS 217 (1272)
Q Consensus 192 ~~veRIi~~r~~~~~~eyLVKWkgL~ 217 (1272)
+.+|+||+.-+..|+..|||||++.+
T Consensus 3 l~~E~Ivg~~d~~G~l~~likwk~~~ 28 (58)
T PF01393_consen 3 LEWEKIVGATDTNGELMFLIKWKNSG 28 (58)
T ss_dssp -TEEEEEEEEECTSSEEEEEEETTSS
T ss_pred CChHHHheeecCCCcEEEEEEECCCC
Confidence 46789998887789999999999986
No 394
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.01 E-value=8.8 Score=40.78 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=37.3
Q ss_pred hhccCCCcceeEEeccccccCCc----chHHHHHHHhcccccEEEEeccCCCCCHHHHHHHHH
Q 000811 421 SASLKPIKWQCMIVDEGHRLKNK----DSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLMH 479 (1272)
Q Consensus 421 ~~~L~~~~w~~vIvDEaHrlKn~----~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll~ 479 (1272)
...+..-.|++||+||.-..-+. ...+...|..-....-+.|||.-.+..+.|+..++.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD~VT 152 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELADLVT 152 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCceee
Confidence 44556678999999998654332 234455555555566899999865555545444443
No 395
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=65.85 E-value=75 Score=38.26 Aligned_cols=71 Identities=17% Similarity=0.236 Sum_probs=40.4
Q ss_pred EecHHHHHhhhhccCCCcceeEEeccccccCCcchHHHHHHHhc-----ccccEEEEeccCCCCCHHHHHHHHHhhcCC
Q 000811 411 LTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQY-----STRHRVLLTGTPLQNNLDELFMLMHFLDAG 484 (1272)
Q Consensus 411 ItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l-----~~~~rllLTGTPlqN~~~EL~~Ll~fL~p~ 484 (1272)
+.+..-+......+.. .++|.||=+-|---... ....+..+ ....-|.||+|-=...+.+++..+..+...
T Consensus 266 v~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~ 341 (407)
T COG1419 266 VYSPKELAEAIEALRD--CDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPID 341 (407)
T ss_pred ecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcc
Confidence 3344444444444443 37889996654221111 22222222 234568999998888888888877777654
No 396
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=65.74 E-value=11 Score=44.28 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=34.8
Q ss_pred CCCCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 281 LSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 281 ~~g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+..+.+.+.|.+-+ ..+...+.+.|++-.||+|||...-+++..+..
T Consensus 124 v~~g~~~~~~~~~L---~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 124 VTSKIMTEAQASVI---RSAIDSRLNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred HHcCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 34466777776554 444567788999999999999988777776643
No 397
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=65.68 E-value=28 Score=40.80 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhcCC---CceEEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 290 QLEGLNFLRFSWSKQ---THVILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~---~~~ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
|-+++..|...+..+ ..-++..+.|.||+..|.+++..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 556666666666655 3467899999999999999999987653
No 398
>PRK10867 signal recognition particle protein; Provisional
Probab=64.74 E-value=37 Score=41.50 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=26.2
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEec
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP 341 (1272)
.+++-..|.|||.++.-++.++... +..+.||-+-
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 5678899999999999999888776 4334444444
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=64.46 E-value=75 Score=38.83 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=24.8
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
..++--.|.|||.++.-++.++...+. ++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~-kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGF-KPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC-CEEEEcC
Confidence 457888999999999888887766554 4444443
No 400
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=64.35 E-value=50 Score=34.66 Aligned_cols=58 Identities=19% Similarity=0.194 Sum_probs=36.9
Q ss_pred hhccCCCcceeEEeccccccCC----cchHHHHHHHhcccccEEEEeccCCCCCHHHHHHHH
Q 000811 421 SASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLKQYSTRHRVLLTGTPLQNNLDELFMLM 478 (1272)
Q Consensus 421 ~~~L~~~~w~~vIvDEaHrlKn----~~S~~~~~l~~l~~~~rllLTGTPlqN~~~EL~~Ll 478 (1272)
...+..-.+++||+||.=..-+ ....+...+..-....-+.|||--.+..+.|+..++
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD~V 149 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAADLV 149 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCcee
Confidence 3445566899999999865533 223455556555556679999986555555544433
No 401
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=64.31 E-value=11 Score=47.21 Aligned_cols=46 Identities=15% Similarity=0.052 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~ 329 (1272)
.++++.|++-++-|......|+=||+-.+||+|||+..|.....++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 6788999999998999999999999999999999998766555443
No 402
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=63.99 E-value=19 Score=48.21 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=28.5
Q ss_pred HHHHHHHhhc--CCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 293 gv~wL~~~~~--~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
-+..++..+. ...+.||.-+.|.|||..+-+++..+..
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4666655443 3568899999999999999888777654
No 403
>PRK14873 primosome assembly protein PriA; Provisional
Probab=63.67 E-value=30 Score=44.70 Aligned_cols=94 Identities=18% Similarity=0.102 Sum_probs=72.7
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEee
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLTFK-K-WQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLS 683 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~~~-g-~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlS 683 (1272)
.|||......++......|+.+||...-+.....+...|..+ | ..+..+++..+..+|.+...+...+.. .++|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~---~IViG 246 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQA---RVVVG 246 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCC---cEEEE
Confidence 689999999999999999999999999999888888888654 3 679999999999999988877755333 37888
Q ss_pred ccccccccCccCCCEEEEec
Q 000811 684 TRAGGLGINLATADTVIIYD 703 (1272)
Q Consensus 684 Tragg~GINL~~Ad~VIi~D 703 (1272)
||++- =.=+..-..||+.|
T Consensus 247 tRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 247 TRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred cceeE-EeccCCCCEEEEEc
Confidence 88752 12233334555543
No 404
>CHL00095 clpC Clp protease ATP binding subunit
Probab=63.58 E-value=25 Score=46.80 Aligned_cols=29 Identities=24% Similarity=0.358 Sum_probs=23.9
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
...+.||.-+.|.|||..+-+++..+...
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i~~~ 227 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRIVNR 227 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHHHhC
Confidence 45688999999999999998887776543
No 405
>PLN03091 hypothetical protein; Provisional
Probab=63.53 E-value=7.1 Score=46.57 Aligned_cols=50 Identities=28% Similarity=0.502 Sum_probs=35.0
Q ss_pred CCCcCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHHHHhcCCCCCCCCC
Q 000811 1081 GKFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP 1133 (1272)
Q Consensus 1081 ~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~ 1133 (1272)
...|+.|||..|+..|.+||-++|..|-.-.. ..|..+....|..+.+.|
T Consensus 14 Kg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g---~gRT~KQCRERW~NyLdP 63 (459)
T PLN03091 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAG---LQRCGKSCRLRWINYLRP 63 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhc---cCcCcchHhHHHHhccCC
Confidence 45799999999999999999999998853211 123334444555555555
No 406
>PRK10865 protein disaggregation chaperone; Provisional
Probab=63.40 E-value=4.2e+02 Score=35.64 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=21.5
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..+|.-++|+|||..|-++...+...
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~ 625 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDS 625 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence 36789999999999998888777643
No 407
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=63.17 E-value=50 Score=38.90 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHHhhcCCCc-eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 286 LHPYQLEGLNFLRFSWSKQTH-VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~-~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
++|+|...-.-+.....+-.+ -++....|+|||..|..++..+...
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 467777776555554444344 4688999999999999999988753
No 408
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=62.90 E-value=2e+02 Score=34.39 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCcHHHHHHHHHHHHhhcC--CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH---HHHHHHHHHHCCC
Q 000811 284 GSLHPYQLEGLNFLRFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL---RNWEREFATWAPQ 358 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~--~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll---~qW~~E~~~~~p~ 358 (1272)
...|.+|+..+.-|...-.. ....+|....|+|||..+-.++..+ .-|+..+++.... .-|..-+.+-.
T Consensus 8 v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~----n~~~vw~n~~ecft~~~lle~IL~~~~-- 81 (438)
T KOG2543|consen 8 VPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL----NLENVWLNCVECFTYAILLEKILNKSQ-- 81 (438)
T ss_pred ccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc----CCcceeeehHHhccHHHHHHHHHHHhc--
Confidence 45789999988766433222 1224789999999999888777765 2366667664322 33444444321
Q ss_pred CeEEEEEcChhHH--HHHHHhhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEecc
Q 000811 359 MNVVMYVGTSQAR--NIIREYEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDE 436 (1272)
Q Consensus 359 ~~vv~~~G~~~~r--~~i~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDE 436 (1272)
..-+.|....- ..+ ..|.-++..++.+.+. -.--++|+|-
T Consensus 82 --~~d~dg~~~~~~~en~------------------------------~d~i~~l~q~~~~t~~------d~~~~liLDn 123 (438)
T KOG2543|consen 82 --LADKDGDKVEGDAENF------------------------------SDFIYLLVQWPAATNR------DQKVFLILDN 123 (438)
T ss_pred --cCCCchhhhhhHHHHH------------------------------HHHHHHHHhhHHhhcc------CceEEEEEcC
Confidence 01111111100 000 0111111111111111 1223799999
Q ss_pred ccccCCcchHHHHHHHhcc-----cccEEEEeccCCCC
Q 000811 437 GHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQN 469 (1272)
Q Consensus 437 aHrlKn~~S~~~~~l~~l~-----~~~rllLTGTPlqN 469 (1272)
|..+....+.+.+.+.++. ..-++.+++++..+
T Consensus 124 ad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 124 ADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred HHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 9999988888888777663 24567788877433
No 409
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=62.61 E-value=17 Score=31.25 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=35.2
Q ss_pred CCChHHHHHHHHHHHhcCCCccc-hhhhchhhc-CC-CHHHHHHHHHHHHH
Q 000811 968 GFSQNQRAAFVQILMRFGVGDFD-WKEFTPRLK-QK-SYEEIREYGILFLT 1015 (1272)
Q Consensus 968 GF~~~~rr~Fv~a~~kyG~~~~~-~~~i~~el~-~K-s~~Evk~Y~~lF~~ 1015 (1272)
.+|+-+...|+.++..||.+++. -..|+.-+. .. |..+|+..+..+..
T Consensus 5 ~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~ 55 (57)
T TIGR01557 5 VWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55 (57)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 35677788999999999987631 156766554 34 99999988876643
No 410
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=62.29 E-value=36 Score=42.04 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=38.8
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
..+.-.+|+-++|.|||..++.++..+...+ +++|.|.......|......+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g-~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQ-MKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC-CcEEEEECcCCHHHHHHHHHH
Confidence 3455578999999999999999888776543 478888887667666554444
No 411
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=62.07 E-value=5.8 Score=43.30 Aligned_cols=39 Identities=26% Similarity=0.818 Sum_probs=29.8
Q ss_pred ccccccccCCCC--------ceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCC
Q 000811 50 KDDSCQACGESE--------NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVS 97 (1272)
Q Consensus 50 ~~~~C~~C~~~~--------~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~ 97 (1272)
..-+|.+|+.++ ....|..|...||..|... =.||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~---------~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK---------KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC---------CCCCCcHh
Confidence 346788887653 3789999999999999852 12999974
No 412
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=62.00 E-value=38 Score=41.45 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=26.0
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhh-CCCCcEEEEec
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFG-ERISPHLVVAP 341 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~-~~~~p~LIVvP 341 (1272)
-.+++-..|.|||.++.-++.++.. .+....||-|-
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3678999999999999999888763 44334444444
No 413
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=61.20 E-value=83 Score=36.95 Aligned_cols=33 Identities=18% Similarity=0.214 Sum_probs=24.3
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEe
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVv 340 (1272)
..|.-..|.|||.++..++..+...+ +.++++.
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~g-~~V~Li~ 149 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQG-KKVLLAA 149 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CeEEEEe
Confidence 44677999999999988888876554 3555554
No 414
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=61.14 E-value=20 Score=46.96 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
...+.||.-+.|+|||..+-++...+...
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~ 234 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQG 234 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhc
Confidence 46788999999999999988777665443
No 415
>CHL00206 ycf2 Ycf2; Provisional
Probab=61.00 E-value=25 Score=49.63 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=32.1
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW 348 (1272)
...+|++|.-.+|+|||+.|=|++... .-|++-|.....+..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNS----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhc----CCceEEEEHHHHhhcc
Confidence 345678899999999999887776642 2388777777777665
No 416
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=60.68 E-value=21 Score=40.61 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEe
Q 000811 288 PYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1272)
Q Consensus 288 ~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVv 340 (1272)
|+...-+..+......+...+|..++|+|||..|-++...+ ..|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh----CCCEEEEe
Confidence 44445555555556788899999999999999998877643 23676664
No 417
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=60.38 E-value=15 Score=47.66 Aligned_cols=53 Identities=21% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-CC--CcEEEEecCc
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS 343 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~--~p~LIVvP~s 343 (1272)
.|.|-|.++|.+ ..+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+.
T Consensus 2 ~Ln~~Q~~av~~------~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~ 57 (672)
T PRK10919 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTN 57 (672)
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechH
Confidence 478899999863 34667777789999999999999999864 43 3688888854
No 418
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=59.64 E-value=34 Score=37.02 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=24.0
Q ss_pred ceeEEeccccccCCcchHHHHHHHhccc--ccEEEEecc
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYST--RHRVLLTGT 465 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~~--~~rllLTGT 465 (1272)
.++|+|||||-+.. .+...|..+.. ..++++.|.
T Consensus 83 ~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 68999999998754 55566666654 466666664
No 419
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=59.37 E-value=92 Score=40.05 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=20.5
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhh
Q 000811 307 VILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
.|+.-+.|.|||..+..++..+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 579999999999988888887754
No 420
>PRK05973 replicative DNA helicase; Provisional
Probab=58.74 E-value=25 Score=39.41 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=40.0
Q ss_pred HHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 297 LRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 297 L~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
+...+..|.-.+|+-.+|+|||+-++-|+......+ .+++++.-...-.+-.+.+..
T Consensus 57 l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~G-e~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 57 LFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSG-RTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred hcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHHHHHHHH
Confidence 333446677789999999999999999988775542 478888765554444444443
No 421
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=58.03 E-value=8.2 Score=43.28 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=37.7
Q ss_pred CCcCHHHHHHHHHHHHhhccCchHHhhcCcccChhHHHHHHhcCCCCCCCCC
Q 000811 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDDKDLKVQEVICQELNLPFINLPVP 1133 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D~~l~l~~~i~~e~~~~~~~~~~~ 1133 (1272)
-.|+.|||..|...|-+||-|+|-.|-.+..| -+.-+-.++|..|-+-|
T Consensus 10 GpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl---~R~GKSCRlRW~NyLrP 58 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGKHNGTALPKLAGL---RRCGKSCRLRWTNYLRP 58 (238)
T ss_pred CCCChHHHHHHHHHHHHhCCCCcchhhhhcCC---CccchHHHHHhhcccCC
Confidence 37999999999999999999999999888755 33334444566665555
No 422
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=57.89 E-value=3.5e+02 Score=35.55 Aligned_cols=44 Identities=25% Similarity=0.394 Sum_probs=32.7
Q ss_pred HHhhhhHHHHHHHHHH-HHHHc---------CceEEEEecchhhHHHHHHHHHh
Q 000811 603 LLESSGKLQLLDKMMV-KLKEQ---------GHRVLIYSQFQHMLDLLEDYLTF 646 (1272)
Q Consensus 603 li~~S~Kl~~L~klL~-~l~~~---------g~KVLIFsq~~~~ldiL~~~L~~ 646 (1272)
.+...+|+..|.++|. ..... .-.|||-|..-++.-.|.++|..
T Consensus 347 ~lE~~pKw~~Ltdil~~e~~~~~~~~~~~~~~~~Vlv~c~dertC~ql~d~lt~ 400 (892)
T KOG0442|consen 347 ELEECPKWEVLTDILFKEIEHEKERADRSNDQGSVLVACSDERTCAQLRDYLTL 400 (892)
T ss_pred ccccCCCcHHHHHHHHhhhhhHHHHhhhcCCCCceEEEeccchhHHHHHHHHhc
Confidence 3456789999999993 32221 23699999999998888888874
No 423
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=57.54 E-value=81 Score=36.15 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=24.4
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEe
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVv 340 (1272)
.++.-..|.|||.++..++..+...+ .++++|.
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~ 107 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAA 107 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEe
Confidence 45678999999999988888776554 3555554
No 424
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=57.18 E-value=6.9 Score=48.12 Aligned_cols=46 Identities=26% Similarity=0.497 Sum_probs=38.3
Q ss_pred ccccccccCCCCceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCC
Q 000811 50 KDDSCQACGESENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 50 ~~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1272)
+.+.|.+|..+|.+++|+.|..++|-.|. ....|.+.|.|..|...
T Consensus 88 ~~~~c~vc~~ggs~v~~~s~~~~~~r~c~---~~~~~~c~~~~~d~~~~ 133 (463)
T KOG1081|consen 88 EPSECFVCFKGGSLVTCKSRIQAPHRKCK---PAQLEKCSKRCTDCRAF 133 (463)
T ss_pred CcchhccccCCCccceeccccccccccCc---CccCcccccCCcceeee
Confidence 45889999999999999999999999995 34567788888877753
No 425
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=57.06 E-value=37 Score=36.20 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=24.8
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~ 342 (1272)
++.-.|++|||...|..+..+...+ .++|++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~~~-~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEIAG-KKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHhCC-CeEEEEEec
Confidence 4567999999998888777664433 477888774
No 426
>smart00300 ChSh Chromo Shadow Domain.
Probab=56.97 E-value=7 Score=34.06 Aligned_cols=24 Identities=25% Similarity=0.551 Sum_probs=21.5
Q ss_pred cchhhhhhhccCCCcceEEeeccc
Q 000811 192 TTVDRILACRGEDDEKEYLVKYKE 215 (1272)
Q Consensus 192 ~~veRIi~~r~~~~~~eyLVKWkg 215 (1272)
..+|+|++....++...||+||++
T Consensus 7 ~~~e~Ivg~~d~~G~l~flikwk~ 30 (61)
T smart00300 7 KSWEDIVGITKDDGELTFLIKWKD 30 (61)
T ss_pred CCHHHHhceecCCCeEEEEEEEeC
Confidence 468899998888899999999999
No 427
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=56.84 E-value=39 Score=38.91 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=27.3
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhC-CCCcEEEEec
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RISPHLVVAP 341 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~p~LIVvP 341 (1272)
+...+|.-.+|+|||.++..++.++... +..++.+|.-
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 4456688899999999999888887654 3335555543
No 428
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=56.77 E-value=12 Score=43.82 Aligned_cols=50 Identities=18% Similarity=0.178 Sum_probs=34.7
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
....|.+|..+.|+|||..|-+..... ..+|+=|-=.++...|..|-.+.
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akea----ga~fInv~~s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEA----GANFINVSVSNLTSKWFGEAQKL 174 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHc----CCCcceeeccccchhhHHHHHHH
Confidence 467889999999999999887766542 23555555455666777665553
No 429
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=56.38 E-value=4.2 Score=46.20 Aligned_cols=66 Identities=20% Similarity=0.467 Sum_probs=40.1
Q ss_pred cccccccccccCCC--C---ceeecCCCCCcc--------ccCcCCCCCCCCCC-CCCcCCcCC-----CCCcccccccc
Q 000811 47 IDAKDDSCQACGES--E---NLMSCDTCTYAY--------HAKCLVPPLKAPPS-GSWRCPECV-----SPLNDIDKILD 107 (1272)
Q Consensus 47 ~~~~~~~C~~C~~~--~---~ll~Cd~C~~~~--------H~~Cl~P~l~~~p~-~~W~C~~C~-----~~~~~iekil~ 107 (1272)
++..+..|.+||+. | -|+.|.+|...| |+.|....-..+.. ..=.||.|. ..+...|.+-+
T Consensus 11 dedl~ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCLtvGMklEAVRA 90 (475)
T KOG4218|consen 11 DEDLGELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCLTVGMKLEAVRA 90 (475)
T ss_pred ccccccccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHHhhhhhhHHHHHH
Confidence 34456789999974 2 299999998765 56676433222221 234688776 23345566655
Q ss_pred ccccc
Q 000811 108 CEMRP 112 (1272)
Q Consensus 108 ~R~rp 112 (1272)
.|||.
T Consensus 91 DRMRG 95 (475)
T KOG4218|consen 91 DRMRG 95 (475)
T ss_pred hhhcc
Confidence 55553
No 430
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=55.91 E-value=29 Score=44.27 Aligned_cols=90 Identities=16% Similarity=0.120 Sum_probs=65.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCC-----CCcEEEEec-CccHHHHHHHHHHHCCC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGER-----ISPHLVVAP-LSTLRNWEREFATWAPQ 358 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~-----~~p~LIVvP-~sll~qW~~E~~~~~p~ 358 (1272)
.|..-|+.+...+ ....-.|+.-..|+|||.+++-++..|+... .-|+||||= ++.+.|...-+... +
T Consensus 378 ildsSq~~A~qs~----ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~--q 451 (1025)
T KOG1807|consen 378 ILDSSQQFAKQSK----LTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH--Q 451 (1025)
T ss_pred eecHHHHHHHHHH----hhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc--C
Confidence 4777898887665 3445678999999999999998888887643 239999998 57778876655432 4
Q ss_pred CeEEEEEcChhHHHHHHHhhhc
Q 000811 359 MNVVMYVGTSQARNIIREYEFY 380 (1272)
Q Consensus 359 ~~vv~~~G~~~~r~~i~~~e~~ 380 (1272)
-..++..|+......++.+.++
T Consensus 452 rpsImr~gsr~~spyLk~~n~~ 473 (1025)
T KOG1807|consen 452 RPSIMRQGSRFFSPYLKVHNYL 473 (1025)
T ss_pred CceEEEeccccCCHHHHHHHHH
Confidence 5567788887766666665544
No 431
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=55.66 E-value=23 Score=41.22 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=31.6
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+.+-+.|.+ +|......+.+.+++-.||+|||..+-+++..+..
T Consensus 115 g~~~~~~~~---~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 115 GIMTAAQRD---VLREAVLARKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCCCHHHHH---HHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 344444443 45555567889999999999999988887776654
No 432
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=55.48 E-value=19 Score=46.82 Aligned_cols=63 Identities=21% Similarity=0.207 Sum_probs=45.1
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-CCC--cEEEEecC-ccHHHHHHHHHH
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPL-STLRNWEREFAT 354 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~--p~LIVvP~-sll~qW~~E~~~ 354 (1272)
|.|-|..++++ ..+.+++....|+|||.+.+.-+.++... +.. .+|+|+.+ .....-.+.+.+
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 77899998863 35677888899999999999999999864 333 57777764 334444444444
No 433
>KOG1244 consensus Predicted transcription factor Requiem/NEURO-D4 [Transcription]
Probab=55.35 E-value=3 Score=45.99 Aligned_cols=60 Identities=30% Similarity=0.618 Sum_probs=40.7
Q ss_pred ccccccccCCC----------CceeecCCCCCccccCcCCCCC---CCCCCCCCcCCcCCCC-----Ccccccccccc
Q 000811 50 KDDSCQACGES----------ENLMSCDTCTYAYHAKCLVPPL---KAPPSGSWRCPECVSP-----LNDIDKILDCE 109 (1272)
Q Consensus 50 ~~~~C~~C~~~----------~~ll~Cd~C~~~~H~~Cl~P~l---~~~p~~~W~C~~C~~~-----~~~iekil~~R 109 (1272)
...+|--|-.+ .+|+.|..|+++=|++||.-.. ..+-.-.|.|-+|..- ...-+.+|.|-
T Consensus 223 Pn~YCDFclgdsr~nkkt~~peelvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~csicgtsenddqllfcd 300 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPEELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYCSICGTSENDDQLLFCD 300 (336)
T ss_pred CCcccceeccccccccccCCchhhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecceeccccCcCCCceeEeec
Confidence 34678888532 2499999999999999994321 2334578999999842 22335667663
No 434
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=55.22 E-value=22 Score=39.96 Aligned_cols=34 Identities=24% Similarity=0.230 Sum_probs=24.2
Q ss_pred eCCCChHHHHHHHHHHHHhhCCCCcEEEE--ecCccH
Q 000811 311 DEMGLGKTIQSIAFLASLFGERISPHLVV--APLSTL 345 (1272)
Q Consensus 311 DemGlGKTiqaia~l~~l~~~~~~p~LIV--vP~sll 345 (1272)
--=|.|||..+.++...|...+. ++|+| .|.+.+
T Consensus 9 ~kGGvG~TTltAnLA~aL~~~G~-~VlaID~dpqN~L 44 (243)
T PF06564_consen 9 PKGGVGKTTLTANLAWALARLGE-SVLAIDLDPQNLL 44 (243)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCC-cEEEEeCCcHHHH
Confidence 34489999999999998877653 56665 454444
No 435
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=55.03 E-value=19 Score=40.96 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=31.6
Q ss_pred HHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEE
Q 000811 295 NFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1272)
Q Consensus 295 ~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIV 339 (1272)
.+|......+++.+++-++|+|||.+.-+++.++-.. ...+++|
T Consensus 118 ~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~-~~~iv~i 161 (270)
T PF00437_consen 118 EFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE-DERIVTI 161 (270)
T ss_dssp HHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT-TSEEEEE
T ss_pred HHHhhccccceEEEEECCCccccchHHHHHhhhcccc-ccceEEe
Confidence 4555555678889999999999999988887766544 2244444
No 436
>PLN03212 Transcription repressor MYB5; Provisional
Probab=54.91 E-value=26 Score=39.02 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCcCHHHHHHHHHHHHhhccCchHHhhcC
Q 000811 1082 KFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1272)
Q Consensus 1082 ~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D 1110 (1272)
..||.|||..||..+.+|| .+|..|-.-
T Consensus 79 gpWT~EED~lLlel~~~~G-nKWs~IAk~ 106 (249)
T PLN03212 79 GGITSDEEDLILRLHRLLG-NRWSLIAGR 106 (249)
T ss_pred CCCChHHHHHHHHHHHhcc-ccHHHHHhh
Confidence 5899999999999999999 689998543
No 437
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=54.88 E-value=30 Score=45.42 Aligned_cols=66 Identities=15% Similarity=0.132 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-CC--CcEEEEecCc-cHHHHHHHHHHHC
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RI--SPHLVVAPLS-TLRNWEREFATWA 356 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~--~p~LIVvP~s-ll~qW~~E~~~~~ 356 (1272)
.|-|-|.++|. ...+.+++....|+|||.+.+.-+.+|... +. ..+|+|+.+. ....-..-+.+..
T Consensus 4 ~Ln~~Q~~av~------~~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 4 GLNDKQREAVA------APPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred ccCHHHHHHHc------CCCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 48899999985 345677888899999999999999999864 33 3688888853 3344444455544
No 438
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=54.87 E-value=68 Score=37.55 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=31.5
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEE
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~ 364 (1272)
++.---|.|||.+..=++.++...+ .++|+.+--.--.-=...++.|.-.+.+-++
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~~g-~~VllaA~DTFRAaAiEQL~~w~er~gv~vI 198 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQQG-KSVLLAAGDTFRAAAIEQLEVWGERLGVPVI 198 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHHCC-CeEEEEecchHHHHHHHHHHHHHHHhCCeEE
Confidence 4566789999977655555555554 3455544333223344556677644444333
No 439
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=54.58 E-value=22 Score=39.29 Aligned_cols=55 Identities=18% Similarity=0.181 Sum_probs=40.3
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHC
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~ 356 (1272)
-.|.-.+++-+.|+|||+.++.|+..-......+++.|+-.....+..+.+..+.
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTT
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcC
Confidence 3455678999999999999999987665541248888888777788888877654
No 440
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=54.47 E-value=65 Score=40.11 Aligned_cols=59 Identities=22% Similarity=0.167 Sum_probs=40.3
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCc------eEEEeCCCChHHHHHHHHHHHH--hhCCC-CcEEEEecC
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTH------VILADEMGLGKTIQSIAFLASL--FGERI-SPHLVVAPL 342 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~------~ILaDemGlGKTiqaia~l~~l--~~~~~-~p~LIVvP~ 342 (1272)
..|.|||...+.-|.-.+.++.+ +++...-|-|||..+.+++.+. +.... ..++|++|.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s 127 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPS 127 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEecc
Confidence 57999999998766433333333 5788889999998766555443 33333 388898885
No 441
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=54.44 E-value=63 Score=40.09 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=22.4
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhh-CCCCcEEEE
Q 000811 307 VILADEMGLGKTIQSIAFLASLFG-ERISPHLVV 339 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~-~~~~p~LIV 339 (1272)
..|.-.+|.|||.++.-++..+.. .+...+.+|
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI 292 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCVMRHGASKVALL 292 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEE
Confidence 457889999999998877776643 333344433
No 442
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=54.24 E-value=20 Score=43.03 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=22.1
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
-.|+++++..+.|.|||..+-.+...+...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 467778888899999997776665555443
No 443
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=53.73 E-value=55 Score=39.57 Aligned_cols=113 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEEEcChhHHHHHHHhhhcCCCCch
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQARNIIREYEFYFPKNPK 386 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r~~i~~~e~~~~~~~~ 386 (1272)
.+++-=.|+|||.++.=++.+|.. ....+|+|+--.--+.-...++..+-...+-+|.-....
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~---------------- 165 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEK---------------- 165 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCC----------------
Q ss_pred hhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCCcchHHHHHHHhcc---cccEEEE
Q 000811 387 KVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLL 462 (1272)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~---~~~rllL 462 (1272)
..-+++..-...++.-.+++||||=|-|+.- ...+...+..++ ..+-++|
T Consensus 166 -------------------------~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~i-de~Lm~El~~Ik~~~~P~E~ll 218 (451)
T COG0541 166 -------------------------DPVEIAKAALEKAKEEGYDVVIVDTAGRLHI-DEELMDELKEIKEVINPDETLL 218 (451)
T ss_pred -------------------------CHHHHHHHHHHHHHHcCCCEEEEeCCCcccc-cHHHHHHHHHHHhhcCCCeEEE
No 444
>CHL00176 ftsH cell division protein; Validated
Probab=53.71 E-value=58 Score=41.99 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=20.4
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASL 328 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l 328 (1272)
..+++|.-+.|+|||..|=+++..+
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~ 240 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEA 240 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999887776543
No 445
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=53.59 E-value=57 Score=36.87 Aligned_cols=26 Identities=15% Similarity=0.104 Sum_probs=19.1
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLAS 327 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~ 327 (1272)
..|..+++.-+.|.|||..+-.++..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~ 39 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANA 39 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 56788888899999999654443333
No 446
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=53.34 E-value=23 Score=46.39 Aligned_cols=53 Identities=23% Similarity=0.169 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhC-CCC--cEEEEecCc
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~--p~LIVvP~s 343 (1272)
.|.|-|.++|.+ ..+..++....|+|||.+.+.-+.+|... +.. .+|+|+-+.
T Consensus 9 ~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~ 64 (721)
T PRK11773 9 SLNDKQREAVAA------PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTN 64 (721)
T ss_pred hcCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccH
Confidence 488999999863 34667777789999999999999999863 433 588888753
No 447
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=53.03 E-value=1.2e+02 Score=37.73 Aligned_cols=45 Identities=24% Similarity=0.334 Sum_probs=28.7
Q ss_pred hhhccCCCcceeEEeccccccCCcchHHHHHHHhcc---cccEEEEeccC
Q 000811 420 DSASLKPIKWQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTP 466 (1272)
Q Consensus 420 d~~~L~~~~w~~vIvDEaHrlKn~~S~~~~~l~~l~---~~~rllLTGTP 466 (1272)
+...+......++|+||+|..++. .++.++..-. .+..++...|+
T Consensus 115 ~~~~~dG~~~~~~i~DE~h~~~~~--~~~~~l~~g~~~r~~pl~~~ISTa 162 (477)
T PF03354_consen 115 DADSLDGLNPSLAIFDELHAHKDD--ELYDALESGMGARPNPLIIIISTA 162 (477)
T ss_pred CCCCccCCCCceEEEeCCCCCCCH--HHHHHHHhhhccCCCceEEEEeCC
Confidence 455667778899999999999863 3555554432 23344444554
No 448
>cd00034 ChSh Chromo Shadow Domain, found in association with N-terminal chromo (CHRromatin Organization MOdifier) domain; Chromo domains mediate the interaction of the heterochromatin with other heterochromatin proteins, thereby affecting chromatin structure (e.g. Drosophila and human heterochromatin protein (HP1) and mammalian modifier 1 and modifier 2)
Probab=52.94 E-value=5.8 Score=33.66 Aligned_cols=22 Identities=32% Similarity=0.507 Sum_probs=17.8
Q ss_pred hhhhhhhccCC-CcceEEeeccc
Q 000811 194 VDRILACRGED-DEKEYLVKYKE 215 (1272)
Q Consensus 194 veRIi~~r~~~-~~~eyLVKWkg 215 (1272)
+++|++....+ |+..||+||++
T Consensus 2 ~~~I~gat~~~~g~l~fl~kwk~ 24 (54)
T cd00034 2 VKPISGASKSDDGELTFLAKWKD 24 (54)
T ss_pred ceEEEEEEEcCCCeEEEEEEEeC
Confidence 56777776555 89999999999
No 449
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=52.80 E-value=21 Score=42.32 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCcc
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLST 344 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sl 344 (1272)
.|+..+|+.+.|+|||..|+++...|-.. -||..++-..+
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~--~PF~~isgSEi 88 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGED--VPFVSISGSEI 88 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTT--S-EEEEEGGGG
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCC--CCeeEccccee
Confidence 46677899999999999999999887433 28888876543
No 450
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=52.72 E-value=6.7 Score=38.26 Aligned_cols=29 Identities=31% Similarity=0.850 Sum_probs=25.1
Q ss_pred cccccccCCC-CceeecCC--CCCccccCcCC
Q 000811 51 DDSCQACGES-ENLMSCDT--CTYAYHAKCLV 79 (1272)
Q Consensus 51 ~~~C~~C~~~-~~ll~Cd~--C~~~~H~~Cl~ 79 (1272)
...|.+|+.. |-.+.|.. |...||+.|..
T Consensus 55 ~~~C~iC~~~~G~~i~C~~~~C~~~fH~~CA~ 86 (110)
T PF13832_consen 55 KLKCSICGKSGGACIKCSHPGCSTAFHPTCAR 86 (110)
T ss_pred CCcCcCCCCCCceeEEcCCCCCCcCCCHHHHH
Confidence 5789999984 77999987 99999999973
No 451
>PRK08939 primosomal protein DnaI; Reviewed
Probab=52.47 E-value=23 Score=41.35 Aligned_cols=46 Identities=22% Similarity=0.291 Sum_probs=32.0
Q ss_pred HHHHHHHhhc--CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEE
Q 000811 293 GLNFLRFSWS--KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVV 339 (1272)
Q Consensus 293 gv~wL~~~~~--~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIV 339 (1272)
+..|+...-. .+.|.+|.-.+|+|||..+.|++..+...+. +++++
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~-~v~~~ 190 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGV-SSTLL 190 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CEEEE
Confidence 3556532211 3567789999999999999999999886553 44444
No 452
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=52.36 E-value=17 Score=43.90 Aligned_cols=47 Identities=17% Similarity=0.149 Sum_probs=36.9
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
++.+|+-+.|.|||+.+.+++... ...|-=|.|.++..-|.-|-++.
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~----~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES----GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh----cceEeeccHHHhhhhccChHHHH
Confidence 466799999999999988877753 23677889999998887776553
No 453
>PRK06921 hypothetical protein; Provisional
Probab=52.18 E-value=43 Score=38.28 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=29.1
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP 341 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP 341 (1272)
.+.+.+|.-++|+|||..+.+++..+.......++.+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 356788999999999999999998887652234455443
No 454
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=51.92 E-value=54 Score=39.62 Aligned_cols=30 Identities=13% Similarity=0.121 Sum_probs=22.2
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
..|..+.|..+.|.|||..+-.++..+...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 567788899999999998766655554433
No 455
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=51.44 E-value=1.6 Score=35.14 Aligned_cols=40 Identities=30% Similarity=0.685 Sum_probs=26.8
Q ss_pred ccccccCCC---C-ceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCC
Q 000811 52 DSCQACGES---E-NLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECV 96 (1272)
Q Consensus 52 ~~C~~C~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~ 96 (1272)
+.|.+|... + .++... |+..||..|+...+... -.||.|.
T Consensus 1 d~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~----~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRN----NSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHS----SB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhC----CcCCccC
Confidence 358888753 2 344444 99999999997776542 2788883
No 456
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=51.36 E-value=51 Score=39.20 Aligned_cols=47 Identities=19% Similarity=0.259 Sum_probs=33.7
Q ss_pred CceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 305 THVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 305 ~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
+++++.-..|+|||+.|=|++... ...|.=|.-..+...|.-|-++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc----~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC----GTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh----cCeEEEechhhhhhhhccchHHH
Confidence 678899999999999887766643 12455555556668898887664
No 457
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=50.53 E-value=7.4 Score=36.38 Aligned_cols=31 Identities=19% Similarity=0.685 Sum_probs=26.4
Q ss_pred cccccccccCCC-CceeecC--CCCCccccCcCC
Q 000811 49 AKDDSCQACGES-ENLMSCD--TCTYAYHAKCLV 79 (1272)
Q Consensus 49 ~~~~~C~~C~~~-~~ll~Cd--~C~~~~H~~Cl~ 79 (1272)
.....|..|+.. |-.+.|. .|.+.||+.|..
T Consensus 34 ~~~~~C~~C~~~~Ga~i~C~~~~C~~~fH~~CA~ 67 (90)
T PF13771_consen 34 RRKLKCSICKKKGGACIGCSHPGCSRSFHVPCAR 67 (90)
T ss_pred HhCCCCcCCCCCCCeEEEEeCCCCCcEEChHHHc
Confidence 345689999998 9899997 599999999974
No 458
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.43 E-value=84 Score=41.11 Aligned_cols=35 Identities=20% Similarity=0.252 Sum_probs=22.9
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHh-hCCCCcEEEEe
Q 000811 306 HVILADEMGLGKTIQSIAFLASLF-GERISPHLVVA 340 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~-~~~~~p~LIVv 340 (1272)
-..|.-.+|.|||.++.-++..+. ..+...+.+|+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit 222 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARCVAREGADQLALLT 222 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEec
Confidence 346889999999988776666553 33333444444
No 459
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=50.37 E-value=9.2 Score=31.94 Aligned_cols=34 Identities=26% Similarity=0.682 Sum_probs=20.3
Q ss_pred ecCCCCCccccCcCCCC--------CCCCCCCCCcCCcCCCCC
Q 000811 65 SCDTCTYAYHAKCLVPP--------LKAPPSGSWRCPECVSPL 99 (1272)
Q Consensus 65 ~Cd~C~~~~H~~Cl~P~--------l~~~p~~~W~C~~C~~~~ 99 (1272)
.|..|...|+..==+|. ..+. ..+|.||.|..+.
T Consensus 3 ~C~~CgyiYd~~~Gd~~~~i~pGt~f~~L-p~~w~CP~C~a~K 44 (50)
T cd00730 3 ECRICGYIYDPAEGDPDEGIPPGTPFEDL-PDDWVCPVCGAGK 44 (50)
T ss_pred CCCCCCeEECCCCCCcccCcCCCCCHhHC-CCCCCCCCCCCcH
Confidence 47777777765422221 1122 3589999998654
No 460
>PF14061 Mtf2_C: Polycomb-like MTF2 factor 2
Probab=50.12 E-value=8.2 Score=31.69 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=18.0
Q ss_pred hhhhhc-cCCCcceEEeeccccc
Q 000811 196 RILACR-GEDDEKEYLVKYKELS 217 (1272)
Q Consensus 196 RIi~~r-~~~~~~eyLVKWkgL~ 217 (1272)
+|++.| ..+|..+|||-|.|.+
T Consensus 27 ~VlArRV~~dG~vQYLvEWeg~~ 49 (50)
T PF14061_consen 27 RVLARRVTPDGKVQYLVEWEGAT 49 (50)
T ss_pred EEEEEEEcCCCcEEEEEEecCcC
Confidence 778877 5678899999998864
No 461
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=49.28 E-value=1.2e+02 Score=37.16 Aligned_cols=53 Identities=19% Similarity=0.205 Sum_probs=29.4
Q ss_pred cceeEEeccccccCCcchHHHHHHHhcc-----cccEEEEeccCCCCCHHHHHHHHHhh
Q 000811 428 KWQCMIVDEGHRLKNKDSKLFSSLKQYS-----TRHRVLLTGTPLQNNLDELFMLMHFL 481 (1272)
Q Consensus 428 ~w~~vIvDEaHrlKn~~S~~~~~l~~l~-----~~~rllLTGTPlqN~~~EL~~Ll~fL 481 (1272)
..+.++||.+=+..+. ..+...+..+. ....|.|++|--.+.+.++...+..+
T Consensus 269 ~~d~VLIDTaGrsqrd-~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~ 326 (420)
T PRK14721 269 GKHMVLIDTVGMSQRD-QMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGH 326 (420)
T ss_pred CCCEEEecCCCCCcch-HHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCC
Confidence 3467888987443322 22344444442 23457789997666666655544433
No 462
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=48.95 E-value=34 Score=39.03 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh
Q 000811 286 LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG 330 (1272)
Q Consensus 286 Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~ 330 (1272)
+.+.|++.+.++.. ..++..+++-++|+|||...-+++..+..
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 67788888766532 23445789999999999998888877643
No 463
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=48.94 E-value=2e+02 Score=34.47 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=34.1
Q ss_pred CCcHHHHHHHHHH-HHhhcC--CCceEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 285 SLHPYQLEGLNFL-RFSWSK--QTHVILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 285 ~Lr~yQlegv~wL-~~~~~~--~~~~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
.-|+-|++.+... ...+.. ..+.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4678888887543 333322 3468999999999999988888877665
No 464
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=48.92 E-value=86 Score=36.56 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=21.7
Q ss_pred eEEEeCCCChHHHHHHHHHHHHhhC
Q 000811 307 VILADEMGLGKTIQSIAFLASLFGE 331 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l~~~ 331 (1272)
-++..+-|.|||..|..++..+...
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c~ 53 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILGK 53 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcCC
Confidence 3789999999999999999888654
No 465
>PRK12377 putative replication protein; Provisional
Probab=48.83 E-value=48 Score=37.45 Aligned_cols=43 Identities=19% Similarity=0.229 Sum_probs=30.7
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRN 347 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~q 347 (1272)
..+.+|.-.+|+|||..+.+++..+...+. .++++.-..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~-~v~~i~~~~l~~~ 143 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGR-SVIVVTVPDVMSR 143 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCC-CeEEEEHHHHHHH
Confidence 356789999999999999999999886542 4444433444443
No 466
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=48.75 E-value=17 Score=38.77 Aligned_cols=35 Identities=29% Similarity=0.266 Sum_probs=19.3
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecC
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPL 342 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~ 342 (1272)
+|..+-|-|||...-.++..+...+..+++|.+|.
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~ 35 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPS 35 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCC
Confidence 34556899999765555555555544589999995
No 467
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=47.96 E-value=84 Score=42.35 Aligned_cols=96 Identities=11% Similarity=0.081 Sum_probs=67.8
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHHH----hCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEE
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYLT----FKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFL 681 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L~----~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfL 681 (1272)
.|||..+....+-.....|.+++|.+..+..+.-....+. ..++++..++|.++..++..++..+..+... ++
T Consensus 482 GsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~d---IV 558 (926)
T TIGR00580 482 GFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKID---IL 558 (926)
T ss_pred CccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCce---EE
Confidence 5778766544443444568899999999887665555443 3477888999999999999999888764333 56
Q ss_pred eeccc-cccccCccCCCEEEEecC
Q 000811 682 LSTRA-GGLGINLATADTVIIYDS 704 (1272)
Q Consensus 682 lSTra-gg~GINL~~Ad~VIi~D~ 704 (1272)
++|.+ ....+.+.....||+=+-
T Consensus 559 IGTp~ll~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLIIDEE 582 (926)
T ss_pred EchHHHhhCCCCcccCCEEEeecc
Confidence 66664 345677778888777554
No 468
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=47.69 E-value=16 Score=41.36 Aligned_cols=35 Identities=31% Similarity=0.687 Sum_probs=29.5
Q ss_pred cccCCCCCCCcCHHHHHHHHHHHHhhccCchHHhhcC
Q 000811 1074 RYPGLRGGKFWKEEHDSLLLRAVLKHGYGRWQAIVDD 1110 (1272)
Q Consensus 1074 ~~~~~~~~~~w~~eeD~~LL~~i~~~Gyg~we~Ik~D 1110 (1272)
.||- ....|+.+|+..|+-++-..|+|+|+.|-+-
T Consensus 58 sypI--~~e~WgadEEllli~~~~TlGlGNW~dIady 92 (432)
T COG5114 58 SYPI--GEEGWGADEELLLIECLDTLGLGNWEDIADY 92 (432)
T ss_pred Cccc--cCCCcCchHHHHHHHHHHhcCCCcHHHHHHH
Confidence 4543 4578999999999999999999999988654
No 469
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=47.16 E-value=81 Score=36.91 Aligned_cols=59 Identities=17% Similarity=0.070 Sum_probs=34.0
Q ss_pred CCChHHHHHHHHHHHHhhCCC--------------CcEEEEecCccHHHHHHHHHHHCCCCeEEEEEcChhHH
Q 000811 313 MGLGKTIQSIAFLASLFGERI--------------SPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGTSQAR 371 (1272)
Q Consensus 313 mGlGKTiqaia~l~~l~~~~~--------------~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~~G~~~~r 371 (1272)
=|+|||=.++.++..+...+. ++..+|.+.+.-..--+|-...+-...+.++.|....+
T Consensus 39 GGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~~~V~V~~dR~~ 111 (311)
T TIGR00682 39 GGTGKTPVVVWLAELLKDRGLRVGVLSRGYGSKTKKYTLVGSKKHTASEVGDEPVLLAKYLHATVVASKDRKD 111 (311)
T ss_pred CCcChHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCeeeeCCCCChHHcCcHHHHhhhhcCCcEEEeChHHH
Confidence 489999999999998875431 13466666665433334433222222344555555443
No 470
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=47.07 E-value=87 Score=36.93 Aligned_cols=122 Identities=20% Similarity=0.190 Sum_probs=68.3
Q ss_pred CChHHHHHHHHHHHHhhCCC---------C-----cEEEEecCccHHHHHHH---HHHHCCCCeEEEEEcChhHHHHHHH
Q 000811 314 GLGKTIQSIAFLASLFGERI---------S-----PHLVVAPLSTLRNWERE---FATWAPQMNVVMYVGTSQARNIIRE 376 (1272)
Q Consensus 314 GlGKTiqaia~l~~l~~~~~---------~-----p~LIVvP~sll~qW~~E---~~~~~p~~~vv~~~G~~~~r~~i~~ 376 (1272)
|+|||=.++.++..|...+. + ..++|.|.+.-..--+| +.+.+| +.++.|....+....-
T Consensus 47 GTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~~~~~~~~~v~~~~~~~~~GDEp~lla~~~~---~~V~V~~dR~~~~~~~ 123 (326)
T PF02606_consen 47 GTGKTPLVIWLARLLQARGYRPAILSRGYGRKSKGEPILVSDGSDAEEVGDEPLLLARKLP---VPVIVGPDRVAAARAA 123 (326)
T ss_pred CCCchHHHHHHHHHHHhcCCceEEEcCCCCCCCCCCeEEEeCCCChhhhcCHHHHHHHhcC---CcEEEeCcHHHHHHHH
Confidence 89999999999999976531 1 27888888866555555 455555 4455555433322111
Q ss_pred hhhcCCCCchhhhccccCccccccccccccccEEEecHHHHHhhhhccCCCcceeEEeccccccCC----cchHHHHHHH
Q 000811 377 YEFYFPKNPKKVKKKKSGQVVSESKQDRIKFDVLLTSYEMINLDSASLKPIKWQCMIVDEGHRLKN----KDSKLFSSLK 452 (1272)
Q Consensus 377 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~fdVvItSye~l~~d~~~L~~~~w~~vIvDEaHrlKn----~~S~~~~~l~ 452 (1272)
. .....+|+|.--. +.. .--....++|++|-.+-+.| +...+..-+.
T Consensus 124 ~-------------------------~~~~~dviilDDG-fQh---~~L~rDl~Ivl~D~~~~~gng~lLPaG~LREp~~ 174 (326)
T PF02606_consen 124 L-------------------------KEFPADVIILDDG-FQH---RRLKRDLDIVLVDADRPFGNGFLLPAGPLREPLS 174 (326)
T ss_pred H-------------------------HHCCCCEEEEcCC-ccc---ccccCCcEEEEEeCCCCCcCCccCCCCcccCChh
Confidence 0 0112455554211 100 00112567888887666555 3344445555
Q ss_pred hcccccEEEEeccCC
Q 000811 453 QYSTRHRVLLTGTPL 467 (1272)
Q Consensus 453 ~l~~~~rllLTGTPl 467 (1272)
.+.....+++|+.+.
T Consensus 175 ~l~rAD~vi~~~~~~ 189 (326)
T PF02606_consen 175 ALKRADAVIVTGCDA 189 (326)
T ss_pred HhCcccEEEEcCCCc
Confidence 566556677777764
No 471
>PHA02929 N1R/p28-like protein; Provisional
Probab=47.07 E-value=7.1 Score=43.53 Aligned_cols=49 Identities=24% Similarity=0.542 Sum_probs=34.2
Q ss_pred ccccccccCCCCc--------eeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCCCccc
Q 000811 50 KDDSCQACGESEN--------LMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSPLNDI 102 (1272)
Q Consensus 50 ~~~~C~~C~~~~~--------ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~~~~i 102 (1272)
.+..|.+|...-. +..-..|...||..|+.+.+...+ .||.|..+...+
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~----tCPlCR~~~~~v 229 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKN----TCPVCRTPFISV 229 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCC----CCCCCCCEeeEE
Confidence 3578999986411 122347999999999988765432 699999766544
No 472
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=46.81 E-value=38 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.6
Q ss_pred CCCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh
Q 000811 283 GGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF 329 (1272)
Q Consensus 283 g~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~ 329 (1272)
.|.+.+.|.+.+ ......+.+.+++-.+|+|||...-+++..+.
T Consensus 130 ~g~~~~~~~~~L---~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~ 173 (319)
T PRK13894 130 RGIMTAAQREAI---IAAVRAHRNILVIGGTGSGKTTLVNAIINEMV 173 (319)
T ss_pred cCCCCHHHHHHH---HHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 345666666544 44456788999999999999977777776653
No 473
>PHA00012 I assembly protein
Probab=46.62 E-value=43 Score=39.10 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCC
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGER 332 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~ 332 (1272)
++.--.|.|||+-|++-+...+..+
T Consensus 5 lITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EEecCCCCCchHHHHHHHHHHHHcC
Confidence 4566789999999998777766665
No 474
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=46.56 E-value=8.3 Score=41.36 Aligned_cols=50 Identities=20% Similarity=0.339 Sum_probs=33.6
Q ss_pred cccccccCCCCceeecCCCCCccccCcCCCCCCC------------CCCCCCcCCcCCCCCc
Q 000811 51 DDSCQACGESENLMSCDTCTYAYHAKCLVPPLKA------------PPSGSWRCPECVSPLN 100 (1272)
Q Consensus 51 ~~~C~~C~~~~~ll~Cd~C~~~~H~~Cl~P~l~~------------~p~~~W~C~~C~~~~~ 100 (1272)
+..|.+|.+.-.--....|...|+..|+...+.. .......||.|..+..
T Consensus 18 ~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 18 DFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred ccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 4669999875443333579999999999654321 0224568999998653
No 475
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=46.32 E-value=52 Score=36.69 Aligned_cols=52 Identities=27% Similarity=0.250 Sum_probs=37.7
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
..+...+++-+.|+|||+.++-|+...... ..+.|+|+-.....+-.+.+..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCHHHHHHHHHH
Confidence 455667889999999999999988876543 2488888866655555555544
No 476
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=46.27 E-value=28 Score=38.70 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=33.7
Q ss_pred hhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCc
Q 000811 300 SWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLS 343 (1272)
Q Consensus 300 ~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~s 343 (1272)
-+..|.-.+|+-.+|+|||..++.++..+......++|++....
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 34566678899999999999999988877665334788887543
No 477
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.20 E-value=77 Score=38.13 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=40.4
Q ss_pred ceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHC
Q 000811 306 HVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWA 356 (1272)
Q Consensus 306 ~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~ 356 (1272)
-.++.-+.|.||+..-+-++..+...+ ++|.|+-..-+.||+-...+..
T Consensus 95 ~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEES~~QiklRA~RL~ 143 (456)
T COG1066 95 VILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEESLQQIKLRADRLG 143 (456)
T ss_pred EEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCcCHHHHHHHHHHhC
Confidence 357899999999987777777776555 9999999999999988887764
No 478
>PF12846 AAA_10: AAA-like domain
Probab=46.16 E-value=37 Score=38.70 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=31.3
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW 348 (1272)
+.++++.-.+|+|||..+..++..+...+ .+++|+=|..-...|
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g-~~~~i~D~~g~~~~~ 44 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG-PRVVIFDPKGDYSPL 44 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC-CCEEEEcCCchHHHH
Confidence 35788899999999998888777776655 366666555444443
No 479
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=46.04 E-value=98 Score=43.86 Aligned_cols=59 Identities=15% Similarity=0.151 Sum_probs=40.5
Q ss_pred CCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHh---hCCCCcEEEEecCccH
Q 000811 285 SLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLF---GERISPHLVVAPLSTL 345 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~---~~~~~p~LIVvP~sll 345 (1272)
.|.+-|.+++..+.. ...+-++|.-..|+|||.+.-+++..+. ......++.++|..--
T Consensus 835 ~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 835 KLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred ccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 689999999976522 2345688999999999998655544432 2222367778996544
No 480
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=45.96 E-value=54 Score=36.50 Aligned_cols=52 Identities=12% Similarity=0.171 Sum_probs=36.9
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
..+.-.+|.-+.|+|||..++.++..+...+ .+++.|+......+-.+.+..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~~~~~~~~~~~~ 73 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQLTTTEFIKQMMS 73 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCCCHHHHHHHHHH
Confidence 4566788999999999999988888776543 467777765555444444433
No 481
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=45.30 E-value=3.9 Score=52.10 Aligned_cols=46 Identities=28% Similarity=0.649 Sum_probs=34.3
Q ss_pred cccccccCCC-------CceeecCCCCCccccCcCCCCCCCCCCCCCcCCcCCCC
Q 000811 51 DDSCQACGES-------ENLMSCDTCTYAYHAKCLVPPLKAPPSGSWRCPECVSP 98 (1272)
Q Consensus 51 ~~~C~~C~~~-------~~ll~Cd~C~~~~H~~Cl~P~l~~~p~~~W~C~~C~~~ 98 (1272)
...|++|-.- =.--+|.+|..-||..|+--.... ++.-.||.|.+.
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S--s~~s~CPlCRse 1521 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS--SARSNCPLCRSE 1521 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh--cCCCCCCccccc
Confidence 3559999631 225789999999999999655443 566789999964
No 482
>PHA00673 acetyltransferase domain containing protein
Probab=45.27 E-value=29 Score=36.22 Aligned_cols=44 Identities=11% Similarity=0.182 Sum_probs=36.7
Q ss_pred ceeEEeccccccCCcchHHHHHHHhcc---cccEEEEeccCCCCCHH
Q 000811 429 WQCMIVDEGHRLKNKDSKLFSSLKQYS---TRHRVLLTGTPLQNNLD 472 (1272)
Q Consensus 429 w~~vIvDEaHrlKn~~S~~~~~l~~l~---~~~rllLTGTPlqN~~~ 472 (1272)
.+.|.|++.||-++-.+.+........ ..++|.+||||-.|.++
T Consensus 88 Ie~l~V~~~~RGqGIG~~Ll~~A~~~Ar~~Gc~~lyis~~p~~~tv~ 134 (154)
T PHA00673 88 TESIFVAAAHRPGGAGMALLRATEALARDLGATGLYVSGPTEGRLVQ 134 (154)
T ss_pred EEEEEEChhccCCCHHHHHHHHHHHHHHHCCCCEEEEecCCCccchH
Confidence 467999999999999998888776653 45899999999888754
No 483
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=45.04 E-value=44 Score=39.98 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHHhh--cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccH
Q 000811 285 SLHPYQLEGLNFLRFSW--SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTL 345 (1272)
Q Consensus 285 ~Lr~yQlegv~wL~~~~--~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll 345 (1272)
+|-+-|..+++.+...+ ..+.+..|.-.-|+|||...=++...+... ..++++++|+.+-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~-~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR-GKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc-cceEEEecchHHH
Confidence 36778999988876555 456667899999999999877777766543 3488999997654
No 484
>PRK09183 transposase/IS protein; Provisional
Probab=44.97 E-value=23 Score=40.24 Aligned_cols=46 Identities=22% Similarity=0.310 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEe
Q 000811 290 QLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVA 340 (1272)
Q Consensus 290 Qlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVv 340 (1272)
++.++.|+ ..+.+.+|.-+.|+|||..+.++...+...+ ..++++.
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G-~~v~~~~ 137 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRAG-IKVRFTT 137 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcC-CeEEEEe
Confidence 34444554 6788899999999999999888866654433 2455443
No 485
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=44.92 E-value=2.4e+02 Score=34.05 Aligned_cols=46 Identities=13% Similarity=0.208 Sum_probs=30.0
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEec-C---ccHHHHHH
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAP-L---STLRNWER 350 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP-~---sll~qW~~ 350 (1272)
+....++-..|.|||.++..++..+...+. ++.+|+- . ..+.||..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~-~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNR-TVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCC-eEEEEeCCccCccHHHHHHH
Confidence 444567889999999998888877755543 4444443 2 23566654
No 486
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.41 E-value=71 Score=39.32 Aligned_cols=121 Identities=19% Similarity=0.252 Sum_probs=83.0
Q ss_pred HHHHHHHHHHcC-ceEEEEecchhhHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEEEeecccc-ccc
Q 000811 613 LDKMMVKLKEQG-HRVLIYSQFQHMLDLLEDYLTFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTRAG-GLG 690 (1272)
Q Consensus 613 L~klL~~l~~~g-~KVLIFsq~~~~ldiL~~~L~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vfLlSTrag-g~G 690 (1272)
+.++++.+...+ ..+|||-..---.=.|..|+...++.|..|.--++...-..+-+-|..+... ++|.+-|+- =.-
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~--vlLyTER~hffrR 617 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKS--VLLYTERAHFFRR 617 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCce--EEEEehhhhhhhh
Confidence 567788776654 4678876644334457888988899999888877777777777888775554 466666663 455
Q ss_pred cCccCCCEEEEecCCCChhhHHHHH---HhhhhcCCC--CceEEEEEeeC
Q 000811 691 INLATADTVIIYDSDWNPHADLQAM---ARAHRLGQT--NKVMIFRLITR 735 (1272)
Q Consensus 691 INL~~Ad~VIi~D~dWNp~~~~Qa~---gRahRiGQ~--k~V~Vyrlit~ 735 (1272)
-.+.++..||+|.||-||+-|.-.+ +|.--.|.+ ..-.+--|+++
T Consensus 618 ~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 618 YHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred heecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 6788899999999999999876544 444444433 22334445554
No 487
>PRK10263 DNA translocase FtsK; Provisional
Probab=44.41 E-value=63 Score=44.28 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCceEEEeCCCChHHHHHHHHHHHHhhC-CCC--cEEEEecCc
Q 000811 304 QTHVILADEMGLGKTIQSIAFLASLFGE-RIS--PHLVVAPLS 343 (1272)
Q Consensus 304 ~~~~ILaDemGlGKTiqaia~l~~l~~~-~~~--p~LIVvP~s 343 (1272)
..+.+++-.+|+|||...-++|..+... ... .+++|=|+.
T Consensus 1010 ~PHLLIAGaTGSGKSv~LntLIlSLl~~~sPeeVrl~LIDPK~ 1052 (1355)
T PRK10263 1010 MPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKM 1052 (1355)
T ss_pred CCcEEEecCCCCCHHHHHHHHHHHHHHhCCccceEEEEECCCc
Confidence 4678999999999999988888776543 222 555666663
No 488
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=44.37 E-value=79 Score=38.17 Aligned_cols=36 Identities=17% Similarity=0.049 Sum_probs=24.1
Q ss_pred eEEEeCCCChHHHHHHHHHHHH-hhC-CCCcEEEEecC
Q 000811 307 VILADEMGLGKTIQSIAFLASL-FGE-RISPHLVVAPL 342 (1272)
Q Consensus 307 ~ILaDemGlGKTiqaia~l~~l-~~~-~~~p~LIVvP~ 342 (1272)
.|+.-.-|+|||..++..+... ... ....+||+.|.
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~ 41 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKV 41 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehh
Confidence 4566778999998876555443 333 34578888784
No 489
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=44.36 E-value=59 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.093 Sum_probs=38.9
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
.+.-.+++.+.|+|||..++.++...... ..+++++.......+-.+.+..+
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCCHHHHHHHHHHc
Confidence 34556789999999999999888776544 35889998877776666666554
No 490
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=44.28 E-value=42 Score=44.13 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=30.2
Q ss_pred CCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHH
Q 000811 303 KQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNW 348 (1272)
Q Consensus 303 ~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW 348 (1272)
...+.+|.-..|+|||..|-+++..+ ..+++.|-+..++..|
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATES----GANFIAVRGPEILSKW 527 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhc----CCCEEEEehHHHhhcc
Confidence 34567899999999999887776653 2377777766555544
No 491
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=44.25 E-value=88 Score=44.79 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhh--C-CCCcEEEEecCccHH
Q 000811 284 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFG--E-RISPHLVVAPLSTLR 346 (1272)
Q Consensus 284 ~~Lr~yQlegv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~--~-~~~p~LIVvP~sll~ 346 (1272)
..|-+-|.+++..+.. ....-.+|.--.|+|||.+.-+++..+.. . ....++.++|+.--.
T Consensus 966 ~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 966 EGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 4689999999987632 23456889999999999886665555432 2 223677789976443
No 492
>PRK13766 Hef nuclease; Provisional
Probab=44.21 E-value=3.8e+02 Score=35.55 Aligned_cols=93 Identities=14% Similarity=0.258 Sum_probs=56.1
Q ss_pred hhhHHHHHHHHHH-HHHHcCceEEEEecchhhHHHHHHHH----HhCCCcEEEEeCCCCHHHHHHHHHHHhccCCCceEE
Q 000811 606 SSGKLQLLDKMMV-KLKEQGHRVLIYSQFQHMLDLLEDYL----TFKKWQYERIDGKVGGAERQIRIDRFNAKNSSRFCF 680 (1272)
Q Consensus 606 ~S~Kl~~L~klL~-~l~~~g~KVLIFsq~~~~ldiL~~~L----~~~g~~~~ridG~~~~~~Rq~~I~~Fn~~~s~~~vf 680 (1272)
.+||.....-++. .+...+.++||.+.......-....+ ...+.++..++|.++..+|..+... .. ++
T Consensus 39 G~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~~-----~~--ii 111 (773)
T PRK13766 39 GLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWEK-----AK--VI 111 (773)
T ss_pred CccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHhC-----CC--EE
Confidence 4788864333333 23456789999999876664444444 3334478889999998888655432 12 34
Q ss_pred Eeecccc-----ccccCccCCCEEEEecCC
Q 000811 681 LLSTRAG-----GLGINLATADTVIIYDSD 705 (1272)
Q Consensus 681 LlSTrag-----g~GINL~~Ad~VIi~D~d 705 (1272)
+++.+.. ..-+++...+.||+-+..
T Consensus 112 v~T~~~l~~~l~~~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 112 VATPQVIENDLIAGRISLEDVSLLIFDEAH 141 (773)
T ss_pred EECHHHHHHHHHcCCCChhhCcEEEEECCc
Confidence 4444332 223566677777776654
No 493
>PRK08760 replicative DNA helicase; Provisional
Probab=43.68 E-value=64 Score=40.15 Aligned_cols=63 Identities=11% Similarity=0.040 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHH
Q 000811 293 GLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATW 355 (1272)
Q Consensus 293 gv~wL~~~~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~ 355 (1272)
.++-+...+..+.=.|||..+|.|||.-++.++.........|++++..--...++...+-..
T Consensus 218 ~LD~~t~G~~~G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 218 DFDAMTAGLQPTDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred HHHHHhcCCCCCceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCHHHHHHHHHHh
Confidence 333344445667778999999999999999998876543334889998877777877766443
No 494
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=43.66 E-value=36 Score=35.54 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=37.5
Q ss_pred hhhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHH
Q 000811 605 ESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1272)
Q Consensus 605 ~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L 644 (1272)
..++++.++-+|+.+...+|+||+|.+.....++.|.+.|
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~L 49 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNL 49 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh
Confidence 4678999999999999999999999999999999999999
No 495
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=43.34 E-value=58 Score=36.82 Aligned_cols=52 Identities=23% Similarity=0.275 Sum_probs=39.4
Q ss_pred cCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHH
Q 000811 302 SKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFAT 354 (1272)
Q Consensus 302 ~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~ 354 (1272)
-.+...++.-.+|+|||+-++-|+......+ .|+|.|+-...-..-.+.+..
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~g-e~vlyvs~~e~~~~l~~~~~~ 72 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREG-EPVLYVSTEESPEELLENARS 72 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcC-CcEEEEEecCCHHHHHHHHHH
Confidence 4567788999999999999999999887773 488998876555444444443
No 496
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=42.98 E-value=41 Score=34.59 Aligned_cols=39 Identities=26% Similarity=0.267 Sum_probs=36.3
Q ss_pred hhhHHHHHHHHHHHHHHcCceEEEEecchhhHHHHHHHH
Q 000811 606 SSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYL 644 (1272)
Q Consensus 606 ~S~Kl~~L~klL~~l~~~g~KVLIFsq~~~~ldiL~~~L 644 (1272)
.+.++.++.+|+.+...+|+||+|++.....++.|.+.|
T Consensus 11 ~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~L 49 (142)
T PRK05728 11 LSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEAL 49 (142)
T ss_pred chhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh
Confidence 566889999999999999999999999999999999999
No 497
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=42.92 E-value=70 Score=35.27 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=35.7
Q ss_pred hcCCCceEEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHH
Q 000811 301 WSKQTHVILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFA 353 (1272)
Q Consensus 301 ~~~~~~~ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~ 353 (1272)
+..+...+++-+.|+|||..+..++......+ .++++|.-.....+..+...
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g-~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDG-DPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcC-CeEEEEEccCCHHHHHHHHH
Confidence 34566778999999999999988887655432 37777776555544444433
No 498
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.83 E-value=3e+02 Score=33.08 Aligned_cols=73 Identities=21% Similarity=0.188 Sum_probs=49.8
Q ss_pred HhhhhHHHHHHHHHHHHHHcCceEEEEecch---hhHHHHHHHHHhCCCcEEE-EeCCCCHHHHHHHHHHHhccCCC
Q 000811 604 LESSGKLQLLDKMMVKLKEQGHRVLIYSQFQ---HMLDLLEDYLTFKKWQYER-IDGKVGGAERQIRIDRFNAKNSS 676 (1272)
Q Consensus 604 i~~S~Kl~~L~klL~~l~~~g~KVLIFsq~~---~~ldiL~~~L~~~g~~~~r-idG~~~~~~Rq~~I~~Fn~~~s~ 676 (1272)
++.+||...+.++...++.+|.|+.+.|--+ ...|.|...-...+++|.- ++..-+..--.+-+++|...+-+
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke~fd 185 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKENFD 185 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhcCCc
Confidence 4567888888888888888888888877654 3566676666666776543 34444555667778888764443
No 499
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.79 E-value=61 Score=38.48 Aligned_cols=56 Identities=18% Similarity=0.089 Sum_probs=36.3
Q ss_pred EEEeCCCChHHHHHHHHHHHHhhCCCCcEEEEecCccHHHHHHHHHHHCCCCeEEEE
Q 000811 308 ILADEMGLGKTIQSIAFLASLFGERISPHLVVAPLSTLRNWEREFATWAPQMNVVMY 364 (1272)
Q Consensus 308 ILaDemGlGKTiqaia~l~~l~~~~~~p~LIVvP~sll~qW~~E~~~~~p~~~vv~~ 364 (1272)
++.-=.|.|||.++.-++.|+.+.+.++.||.+.+- -.--.+.++.|+....+-+|
T Consensus 105 mfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTF-RagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 105 MFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTF-RAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred EEEeccCCCcceeHHHHHHHHHhcCCceeEEeeccc-ccchHHHHHHHhHhhCCeeE
Confidence 466778999999988888888888776777766532 12223445555544444444
No 500
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=42.57 E-value=15 Score=46.27 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=28.3
Q ss_pred cccccEEEecHHHHHhhhh--cc-CCCcceeEEeccccccCC
Q 000811 404 RIKFDVLLTSYEMINLDSA--SL-KPIKWQCMIVDEGHRLKN 442 (1272)
Q Consensus 404 ~~~fdVvItSye~l~~d~~--~L-~~~~w~~vIvDEaHrlKn 442 (1272)
....++|+..|..+..+.. .+ -..+=.+|||||||++-+
T Consensus 321 vp~aqlV~LPYQ~LL~~stR~slgI~LkdsIvIiDEAHNlid 362 (821)
T KOG1133|consen 321 VPQAQLVTLPYQLLLHESTRKSLGISLKDSIVIIDEAHNLID 362 (821)
T ss_pred cccccEEeccHHHHHhHHHHHhcCccccccEEEEechhHHHH
Confidence 3567899999999976533 22 233456899999998754
Done!