Query 000813
Match_columns 1270
No_of_seqs 191 out of 318
Neff 4.0
Searched_HMMs 29240
Date Tue Mar 26 17:22:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000813.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_582-585//hhsearch_pdb/000813hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 32.3 2.8 135 644-790 224-363 (802)
2 2zpa_A Uncharacterized protein 1.0 1 1 18.0 -1.9 11 593-603 307-317 (671)
3 2ysr_A DEP domain-containing p 1.0 1 1 17.8 -0.4 30 168-197 9-38 (105)
4 3fgr_B Putative phospholipase 1.0 1 1 17.6 0.5 15 739-753 328-342 (357)
5 1ich_A TNF-1, tumor necrosis f 1.0 1 1 17.5 1.9 81 450-530 11-103 (112)
6 2z86_A Chondroitin synthase; G 1.0 1 1 17.4 1.0 53 645-704 441-494 (625)
7 3n4p_A Terminase subunit UL89 1.0 1 1 16.0 -1.3 51 162-222 143-193 (279)
8 3fbx_A Putative phospholipase 1.0 1 1 15.8 0.7 15 739-753 530-544 (559)
9 3mkq_B Coatomer subunit alpha; 1.0 1 1 15.2 2.6 47 211-259 15-64 (177)
10 1l6x_B Minimized B-domain of p 1.0 1 1 15.1 -0.7 21 665-685 1-21 (34)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=32.33 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=78.6
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCC-----CHHHCCCCCC
Q ss_conf 89865743200000244310004775122899972332699885307999965631232021166-----2000011122
Q 000813 644 EGKPENQNHAVIFTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGS-----VSSLAYFMSN 718 (1270)
Q Consensus 644 EGKpENQNHAiIFtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~g~~p~tIlG~REhIFTgs-----vssLa~f~a~ 718 (1270)
.||+.|.|+++-.++||++-.+|..--- -.++++ .+++.+++++ .+.+++.+-.+..++ .+...... .
T Consensus 224 ~GKa~alN~gl~~a~gd~Il~lDaD~~~-~pd~L~--~lv~~~~~dp---~v~~V~~~~~~~~~~~~~~~~~~~~~~~-~ 296 (802)
T 4hg6_A 224 HAKAGNMSAALERLKGELVVVFDADHVP-SRDFLA--RTVGYFVEDP---DLFLVQTPHFFINPDPIQRNLALGDRCP-P 296 (802)
T ss_dssp SHHHHHHHHHHHHCCCSEEEECCTTEEE-CTTHHH--HHHHHHHHSS---SCCEEECCCCBSSCCHHHHHHTCCTTSC-C
T ss_pred CCCHHHHHHHHHHCCCCEEEEECCCCCC-CHHHHH--HHHHHHHCCC---CEEEEECCEEEECCCHHHHHHHHHHHHH-H
T ss_conf 7636899999996599999999999881-858999--9999984099---8599965679767855765444776516-7
Q ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEE
Q ss_conf 113677766674116562000026994332102224686332210012404331112010156200145327
Q 000813 719 QETSFVTLGQRVLANPLKCRMHYGHPDVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNVTHHEYI 790 (1270)
Q Consensus 719 qE~sFvTl~qR~LA~Pl~vR~HYGHPDvfd~~F~~TRGGvSKAsk~inLSEDIFaG~N~~lRgG~I~h~EYi 790 (1270)
....|-...++.... .....--|+-=++.|-....-||.... .++||..-+.....+|.++.++.-.
T Consensus 297 ~~~~~~~~~~~~~~~-~~~~~~~G~~~~~Rr~al~~vGgf~~~----~~~ED~~l~~rl~~~G~ri~~~~~~ 363 (802)
T 4hg6_A 297 ENEMFYGKIHRGLDR-WGGAFFCGSAAVLRRRALDEAGGFAGE----TITEDAETALEIHSRGWKSLYIDRA 363 (802)
T ss_dssp TTHHHHHTHHHHHHH-TTCCCCCSSSEEEEHHHHHHHTTCCCS----SSSHHHHHHHHHHTTTCCEEECCCC
T ss_pred HHHHHHHHHHHHHHH-CCCCEECCCCHHHHHHHHHHCCCCCCC----CCCHHHHHHHHHHHCCCEEEEECCC
T ss_conf 899998888754764-388454266403249999970886788----8030999999999769959993688
No 2
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=1.00 E-value=1 Score=17.96 Aligned_cols=11 Identities=9% Similarity=-0.061 Sum_probs=5.4
Q ss_pred CCCEEEEECCC
Q ss_conf 58379973133
Q 000813 593 EALRVAFIDDV 603 (1270)
Q Consensus 593 P~LrVAYide~ 603 (1270)
|.++...++|+
T Consensus 307 ~~~~~~~L~~p 317 (671)
T 2zpa_A 307 PHLHRFELQQP 317 (671)
T ss_dssp TTCEEEECCSC
T ss_pred CCCCEEECCCC
T ss_conf 97767981576
No 3
>2ysr_A DEP domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=17.79 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHCCCCCCCCHHHHHHHCCC
Q ss_conf 222017999740244345631346464367
Q 000813 168 RFSPFWNEIIKNLREEDYITNLEMELLLMP 197 (1270)
Q Consensus 168 rFa~~WNeiI~sfReeDlisdrE~~lL~~p 197 (1270)
|-..+||+||..||....|-||...+=.+|
T Consensus 9 ~at~lw~~ii~~~~~g~~ikdrr~~lk~y~ 38 (105)
T 2ysr_A 9 RATKLWNEVTTSFRAGMPLRKHRQHFKKYG 38 (105)
T ss_dssp HHHHHHHHHHHHHHHSCSCCCCCCSSSSCS
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCEECC
T ss_conf 178999999999975997532346889988
No 4
>3fgr_B Putative phospholipase B-like 2 40 kDa form; alpha beta, glycosylated, disulphide bonds, N-terminal nucle hydrolase fold, two chain form; HET: NAG; 1.80A {Mus musculus} PDB: 3fgt_B*
Probab=1.00 E-value=1 Score=17.63 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 002699433210222
Q 000813 739 MHYGHPDVFDRVFHI 753 (1270)
Q Consensus 739 ~HYGHPDvfd~~F~~ 753 (1270)
.|+||||+||=-|..
T Consensus 328 ~H~G~Pd~~~F~~v~ 342 (357)
T 3fgr_B 328 LHMGQPDLWMFSPIR 342 (357)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 969988672777789
No 5
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=1.00 E-value=1 Score=17.50 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=52.3
Q ss_pred CCCCHHHHHHHHCC-HHHHHHHHHHCCCCCCCCCCCCCCC-----HHHHHHHHHHHCCC------CHHHHCCCCCCCHHH
Q ss_conf 96319999986294-1233478661899897663246995-----23675545333032------003010022103899
Q 000813 450 DGISILFYLQKIYP-DEWKNFLSRIGRDENSQDTELFDSP-----SDILELRFWASYRA------QTLARTVRGMMYYRK 517 (1270)
Q Consensus 450 dgvsiL~YL~~i~P-dEW~NFleR~~~~~~~~~~~~~~~~-----~~~~elRlWAS~Rg------QTL~RTVrGmM~Y~~ 517 (1270)
+.-.+++..-..-| .+|+.|+.++|..+.+.++-..+.| ..-.=||.|---.| +||..+.+-|=.-..
T Consensus 11 ~~~~~l~~i~d~v~~~~WK~~aRkLGLse~~Id~Ie~~~~r~l~Eq~yqmLr~W~~~~G~~~Atv~~L~~aLr~~~l~~~ 90 (112)
T 1ich_A 11 DDPATLYAVVENVPPLRWKEFVKRLGLSDHEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGC 90 (112)
T ss_dssp --CHHHHHHHHHSCSTTHHHHHHHHTCCHHHHHHHHHHCCSCHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHTTCHHH
T ss_pred CCHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHH
T ss_conf 24599999999678999999999919988899999987768759999999999998648887749999999998262779
Q ss_pred HHHHHHHHHCCCC
Q ss_conf 9999997520798
Q 000813 518 ALMLQAYLERMTS 530 (1270)
Q Consensus 518 ALkll~~lE~~~~ 530 (1270)
|-+++..++.++.
T Consensus 91 ae~Ie~~l~~~~~ 103 (112)
T 1ich_A 91 LEDIEEALCGPAA 103 (112)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999853346
No 6
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=17.37 Aligned_cols=53 Identities=26% Similarity=0.364 Sum_probs=27.7
Q ss_pred CCCCCCCCCHHCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHCCCCCCCEEECCCCEE
Q ss_conf 98657432000002443100047751228-9997233269988530799996563123202
Q 000813 645 GKPENQNHAVIFTRGNAIQTIDMNQDNYF-EEALKMRNLLEEFHADHGIRPPTILGVREHV 704 (1270)
Q Consensus 645 GKpENQNHAiIFtRGE~lQtIDmNQDnYl-EEaLKmRNlL~EF~~~~g~~p~tIlG~REhI 704 (1270)
|+..+-|.++-.++|||+-.+|. |..+ .++| ..+++.+++++ .+.+++.....
T Consensus 441 G~~~a~n~g~~~a~g~~i~~ld~--D~~~~~~~l--~~~~~~~~~~~---~~~~v~~~~~~ 494 (625)
T 2z86_A 441 GIGSASNTAVRLCRGFYIGQLDS--DDFLEPDAV--ELCLDEFRKDL---SLACVYTTNRN 494 (625)
T ss_dssp CHHHHHHHHHHHCCSSEEEECCT--TCEECTTHH--HHHHHHHHHCT---TCSEEEEEEEE
T ss_pred CHHHHHHHHHHHCCCCEEEEECC--CCCCCHHHH--HHHHHHHHHCC---CEEEEEEEEEE
T ss_conf 98999999998567787999889--766283599--99999998479---81399820489
No 7
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=1.00 E-value=1 Score=15.95 Aligned_cols=51 Identities=12% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCHHHHCCHHHHHHH
Q ss_conf 0000012220179997402443456313464643678899977534614572030579988
Q 000813 162 KKFDAARFSPFWNEIIKNLREEDYITNLEMELLLMPKNSGSLLLVQWPLFLLASKIFYAKD 222 (1270)
Q Consensus 162 ~~~~~~rFa~~WNeiI~sfReeDlisdrE~~lL~~p~~~~~~~~i~wP~FLla~ki~~Ald 222 (1270)
+|..|.+-|-.-+|.+.+.+.- +++-+.+.+.+ .++||-|||-.+-..|.|
T Consensus 143 sQdsAVaIA~~i~~~~~~~~~~--------~~~FyH~~d~~--~v~~PfylL~~eK~~Afe 193 (279)
T 3n4p_A 143 NQAAAVRIACLIRQSVQSSTLI--------RVLFYHTPDQN--HIEQPFYLMGRDKALAVE 193 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC--------EEEEECEEETT--TEEESCBCCSTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCC--------CEEEEECCCCC--CCCCCCHHHCCCHHHHHH
T ss_conf 1889999999999876424566--------37998417986--430873120640479999
No 8
>3fbx_A Putative phospholipase B-like 2; alpha beta, glycosylated, disulphide bonds, oxidized cystein glycoprotein, hydrolase, lipid degradation, lysosome; HET: NAG PG4 PGE; 2.40A {Mus musculus} PDB: 3fgw_A*
Probab=1.00 E-value=1 Score=15.79 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 002699433210222
Q 000813 739 MHYGHPDVFDRVFHI 753 (1270)
Q Consensus 739 ~HYGHPDvfd~~F~~ 753 (1270)
.|+||||+||=-|..
T Consensus 530 ~H~G~Pd~~nF~~v~ 544 (559)
T 3fbx_A 530 LHMGQPDLWMFSPIR 544 (559)
T ss_dssp CCTTCCSEECCCCEE
T ss_pred CCCCCCCCCCCCCEE
T ss_conf 979999672778789
No 9
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=15.25 Aligned_cols=47 Identities=21% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHCCHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH---HHHHHHHHHHHHHH
Q ss_conf 57203057998899970468199999850072488---89999999999999
Q 000813 211 FLLASKIFYAKDIAVENRDSQDELWERISRDEYMK---YAVEEFYHTLKFIL 259 (1270)
Q Consensus 211 FLla~ki~~Ald~a~~~~~~~~~l~~~i~~d~y~~---~Av~e~y~s~k~il 259 (1270)
=|-+|.+..|+++|.+. .+...|+++...-... .-+++||...+.+=
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHHH--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHH
T ss_conf 99559999999999980--889999999999999599699999999848899
No 10
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=1.00 E-value=1 Score=15.15 Aligned_cols=21 Identities=43% Similarity=0.449 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q ss_conf 047751228999723326998
Q 000813 665 IDMNQDNYFEEALKMRNLLEE 685 (1270)
Q Consensus 665 IDmNQDnYlEEaLKmRNlL~E 685 (1270)
.|+-|.|-|=|.|+|.||-+|
T Consensus 1 ~~~~qQnaFYevLh~~nLtEe 21 (34)
T 1l6x_B 1 FNMQCQRRFYEALHDPNLNEE 21 (34)
T ss_dssp CCHHHHHHHHHHHHCTTCCHH
T ss_pred CCHHHHHHHHHHHCCCCCCHH
T ss_conf 978999999999918987899
Done!