Query 000813
Match_columns 1270
No_of_seqs 191 out of 318
Neff 4.0
Searched_HMMs 13730
Date Tue Mar 26 17:29:21 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000813.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_582-585//hhsearch_scop/000813hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gl5a1 c.1.11.2 (A:123-400) P 5.8 59 0.0043 6.5 0.2 89 582-687 107-196 (278)
2 d1xhba2 c.68.1.17 (A:95-422) P 4.5 80 0.0058 5.5 1.8 34 644-677 93-129 (328)
3 d2p62a1 e.67.1.1 (A:1-241) Hyp 3.4 1.1E+02 0.0083 4.3 1.4 109 635-748 32-148 (241)
4 d1c3da_ a.102.4.4 (A:) C3D, a 3.1 1.3E+02 0.0094 3.9 0.2 14 517-530 240-253 (294)
5 d1wlna1 b.26.1.2 (A:8-114) Afa 3.0 1.3E+02 0.0096 3.8 1.9 43 628-671 20-73 (107)
6 d2yrka1 g.37.1.4 (A:8-55) Zinc 2.8 1.1E+02 0.0081 4.4 -0.6 15 693-707 15-29 (48)
7 d1r9wa_ d.89.1.2 (A:) Replicat 2.7 1.5E+02 0.011 3.3 1.4 23 766-792 40-62 (145)
8 d1n0ua4 d.58.11.1 (A:482-560) 2.5 1.6E+02 0.012 3.1 2.5 36 565-601 7-42 (79)
9 d1jaea1 b.71.1.1 (A:379-471) A 2.4 1.7E+02 0.013 2.9 0.2 13 648-660 9-21 (93)
10 d1w4ta1 d.3.1.5 (A:1-277) Aryl 2.3 1.8E+02 0.013 2.7 1.0 88 739-826 47-157 (277)
No 1
>d2gl5a1 c.1.11.2 (A:123-400) Putative dehydratase protein STM2273 {Salmonella typhimurium [TaxId: 90371]}
Probab=5.77 E-value=59 Score=6.47 Aligned_cols=89 Identities=10% Similarity=0.053 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHCCCCCC
Q ss_conf 58699999859583799731334445896440698888522789962104886438998678898657432000002443
Q 000813 582 AADIALLMQRNEALRVAFIDDVETLKDGKVHREFYSKLVKGDINGKDKEIYSIKLPGNPKLGEGKPENQNHAVIFTRGNA 661 (1270)
Q Consensus 582 a~dI~~Lm~~~P~LrVAYide~~~~~~g~~~~~yySvLvk~~~~g~~~eiYRIkLPGnpilGEGKpENQNHAiIFtRGE~ 661 (1270)
..+-..+++.-..+.+.+++|.-...+ ..-|..| |=+.+-|...||--..-+...-....|-.
T Consensus 107 ~~~Ai~~~~~L~~~~l~wiEePi~~~d----~~~~~~L-------------~~~~~ipIa~gE~~~~~~~~~~~i~~~a~ 169 (278)
T d2gl5a1 107 TNSAIQFAKAIEKYRIFLYEEPIHPLN----SDNMQKV-------------SRSTTIPIATGERSYTRWGYRELLEKQSI 169 (278)
T ss_dssp HHHHHHHHHHHGGGCEEEEECSSCSSC----HHHHHHH-------------HHHCSSCEEECTTCCTTHHHHHHHHTTCC
T ss_pred CHHHHHHHHHHCCCCCCEECCCCCCCC----HHHHHHH-------------CCCCCCCEECCCCCCCHHHHHHHHCCCCC
T ss_conf 115677887751343210036632235----3555430-------------10324533225554785787654203541
Q ss_pred -CCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -10004775122899972332699885
Q 000813 662 -IQTIDMNQDNYFEEALKMRNLLEEFH 687 (1270)
Q Consensus 662 -lQtIDmNQDnYlEEaLKmRNlL~EF~ 687 (1270)
+=-+|...-+=+-|++|+.++.+++.
T Consensus 170 di~~~d~~~~GGit~~~kia~la~~~g 196 (278)
T d2gl5a1 170 AVAQPDLCLCGGITEGKKICDYANIYD 196 (278)
T ss_dssp SEECCCTTTTTHHHHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 267531210056366777654554403
No 2
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.52 E-value=80 Score=5.45 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=22.8
Q ss_pred CCCCCCCCCCHHCCCCCCCCCCCCC---CCCHHHHHH
Q ss_conf 8986574320000024431000477---512289997
Q 000813 644 EGKPENQNHAVIFTRGNAIQTIDMN---QDNYFEEAL 677 (1270)
Q Consensus 644 EGKpENQNHAiIFtRGE~lQtIDmN---QDnYlEEaL 677 (1270)
.|.+...|.++--++||++-.+|.- ..++||+.+
T Consensus 93 ~G~~~a~N~Gi~~a~gd~i~flD~D~~~~p~~l~~l~ 129 (328)
T d1xhba2 93 SGLIRARLKGAAVSRGQVITFLDAHCECTAGWLEPLL 129 (328)
T ss_dssp CCHHHHHHHHHHHCCSSEEEEEESSEEECTTCHHHHH
T ss_pred CCCHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHH
T ss_conf 3216887899986311002201765566736999999
No 3
>d2p62a1 e.67.1.1 (A:1-241) Hypothetical protein PH0156 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=3.40 E-value=1.1e+02 Score=4.28 Aligned_cols=109 Identities=17% Similarity=0.145 Sum_probs=51.9
Q ss_pred ECCCCCCCCCCCCCCCCCCHH-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCEEECCCC----
Q ss_conf 438998678898657432000-002443100047751228999723326998853079999656312320211662----
Q 000813 635 KLPGNPKLGEGKPENQNHAVI-FTRGNAIQTIDMNQDNYFEEALKMRNLLEEFHADHGIRPPTILGVREHVFTGSV---- 709 (1270)
Q Consensus 635 kLPGnpilGEGKpENQNHAiI-FtRGE~lQtIDmNQDnYlEEaLKmRNlL~EF~~~~g~~p~tIlG~REhIFTgsv---- 709 (1270)
++|-|.+++|+++|--||++. =.-|-++-.|..+-..-.--+|+ |.|.-.+- +.-.|.++|+---|=.++-
T Consensus 32 ~~~~~~~~ie~~fer~~~~l~le~d~v~LaVi~seGns~v~rnL~--n~l~Am~v--~~~~v~~iGvA~DvDe~~ev~~~ 107 (241)
T d2p62a1 32 KLTPEFPIGKWGFRIGEHPLVLEKDNIALVIIHAEGKQRIPKVLK--SVLDSVKL--GLLNVEEVYVVRDVDEGNDVFEW 107 (241)
T ss_dssp SCCCCCCHHHHCCCTTCCCEEEEETTEEEEEECSCCTTTHHHHHH--HHHHHHHH--TCCCEEEEEEEEESSSSSCHHHH
T ss_pred CCCCCCCHHHHHCCCCCCCCEEECCCEEEEEEECCCCCHHHHHHH--HHHHHHHH--HCCCHHEEEEEEECCCCHHHHHH
T ss_conf 489766114432355663313433885899984788413778999--99999997--44461116888743760788999
Q ss_pred --HHHCCCCCCCHHHHHHHHHHHHCCCCCCC-CCCCCCCCCC
Q ss_conf --00001112211367776667411656200-0026994332
Q 000813 710 --SSLAYFMSNQETSFVTLGQRVLANPLKCR-MHYGHPDVFD 748 (1270)
Q Consensus 710 --ssLa~f~a~qE~sFvTl~qR~LA~Pl~vR-~HYGHPDvfd 748 (1270)
|.|..+....+..|- +.+-+-.-|+.+- .+.++|++.-
T Consensus 108 ~~s~l~~~e~~~~~g~~-~~~~~~i~pl~Ig~~~~~~p~~~~ 148 (241)
T d2p62a1 108 VLSFLREREVRVDNGAI-VTEGVKIYPYGMGNLTLNEPFVKE 148 (241)
T ss_dssp HHTTCTTCCCEEETTEE-EETTEEEEEEEECCSCCCCTTBCC
T ss_pred HHHHHHCCCCCCCCCEE-EECCEEEEEEEECCCCCCCCHHHH
T ss_conf 99986236754467728-974669999763364668614654
No 4
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.06 E-value=1.3e+02 Score=3.86 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=7.6
Q ss_pred HHHHHHHHHHCCCC
Q ss_conf 99999997520798
Q 000813 517 KALMLQAYLERMTS 530 (1270)
Q Consensus 517 ~ALkll~~lE~~~~ 530 (1270)
.|+-|++.++..+.
T Consensus 240 ta~alla~~~~~~~ 253 (294)
T d1c3da_ 240 TSYALLALLQLKDF 253 (294)
T ss_dssp HHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHCCCH
T ss_conf 99999999745883
No 5
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.01 E-value=1.3e+02 Score=3.79 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=25.7
Q ss_pred CCEEEEEECCCCCCCCCCCCC-----------CCCCCHHCCCCCCCCCCCCCCCC
Q ss_conf 210488643899867889865-----------74320000024431000477512
Q 000813 628 DKEIYSIKLPGNPKLGEGKPE-----------NQNHAVIFTRGNAIQTIDMNQDN 671 (1270)
Q Consensus 628 ~~eiYRIkLPGnpilGEGKpE-----------NQNHAiIFtRGE~lQtIDmNQDn 671 (1270)
...+|+++ +|...+|-|+++ -..||.|-..++.+...|.+..|
T Consensus 20 ~~~~~~l~-~~~~~iG~~rs~~~dI~L~~~~Vs~~Ha~i~~~~~~~~l~d~~s~~ 73 (107)
T d1wlna1 20 KPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDA 73 (107)
T ss_dssp CCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEESSSCEEEEESCSSS
T ss_pred CCEEEEEC-CCCEEECCCCCCCCCEEECCCCEEEEEEEEEECCCCCEEECCCCCC
T ss_conf 64899979-9987999987899849989965332199999724631995278886
No 6
>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.78 E-value=1.1e+02 Score=4.36 Aligned_cols=15 Identities=27% Similarity=0.658 Sum_probs=8.5
Q ss_pred CCCEEECCCCEEECC
Q ss_conf 996563123202116
Q 000813 693 RPPTILGVREHVFTG 707 (1270)
Q Consensus 693 ~p~tIlG~REhIFTg 707 (1270)
..-+=+-+|+||||.
T Consensus 15 KYs~~~SvrdHiFsk 29 (48)
T d2yrka1 15 KYSARLSIRDHIFSK 29 (48)
T ss_dssp CCCSSSCHHHHHTSH
T ss_pred EEEEECCHHHHHHHH
T ss_conf 430102167665229
No 7
>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}
Probab=2.67 E-value=1.5e+02 Score=3.31 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=14.1
Q ss_pred CCCHHHHHHHHHHCCCCEEEEEEEEEE
Q ss_conf 240433111201015620014532783
Q 000813 766 NISEDIYAGFNTTLRQGNVTHHEYIQV 792 (1270)
Q Consensus 766 nLSEDIFaG~N~~lRgG~I~h~EYiQc 792 (1270)
.++||++.+....|+ .||+|+|+
T Consensus 40 gv~~~l~ea~k~lLq----~hc~y~~~ 62 (145)
T d1r9wa_ 40 GVNPTIAEGFKTLIQ----PFILYAHI 62 (145)
T ss_dssp EECHHHHHTHHHHHG----GGEEEEEE
T ss_pred EECHHHHHHHHHHHH----HHEEEEEE
T ss_conf 708899999999977----44127888
No 8
>d1n0ua4 d.58.11.1 (A:482-560) Elongation factor 2 (eEF-2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.51 E-value=1.6e+02 Score=3.06 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=27.5
Q ss_pred EEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9986404788957750058699999859583799731
Q 000813 565 VVTSQIYGKQKEDQKPEAADIALLMQRNEALRVAFID 601 (1270)
Q Consensus 565 VVscQ~Yg~~k~~~~~~a~dI~~Lm~~~P~LrVAYid 601 (1270)
|+++-+..+.+.+.+.-.+.+..|.+..|+++| +.+
T Consensus 7 v~~~aiep~~~~d~~kL~~aL~kl~~eDpsl~v-~~~ 42 (79)
T d1n0ua4 7 VVQVAVEVKNANDLPKLVEGLKRLSKSDPCVLT-YMS 42 (79)
T ss_dssp CEEEEEEESSGGGHHHHHHHHHHHHHHCTTCEE-EEC
T ss_pred EEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEE-EEC
T ss_conf 799999989887999999999999975995799-874
No 9
>d1jaea1 b.71.1.1 (A:379-471) Animal alpha-amylase {Yellow mealworm (Tenebrio molitor), larva [TaxId: 7067]}
Probab=2.38 E-value=1.7e+02 Score=2.86 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=0.0
Q ss_pred CCCCCCHHCCCCC
Q ss_conf 5743200000244
Q 000813 648 ENQNHAVIFTRGN 660 (1270)
Q Consensus 648 ENQNHAiIFtRGE 660 (1270)
+|-|+.|.|.||.
T Consensus 9 dng~nqIAF~RG~ 21 (93)
T d1jaea1 9 SNDDNQIAFSRGS 21 (93)
T ss_dssp ECSSSEEEEEETT
T ss_pred ECCCCEEEEECCC
T ss_conf 8999579991599
No 10
>d1w4ta1 d.3.1.5 (A:1-277) Arylamine N-acetyltransferase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=2.28 E-value=1.8e+02 Score=2.68 Aligned_cols=88 Identities=20% Similarity=0.271 Sum_probs=0.0
Q ss_pred CCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEE-------------EEEEE-EEECCCC--
Q ss_conf 002699------4332102224686332210012404331112010156200-------------14532-7834643--
Q 000813 739 MHYGHP------DVFDRVFHITRGGISKASRVINISEDIYAGFNTTLRQGNV-------------THHEY-IQVGKGR-- 796 (1270)
Q Consensus 739 ~HYGHP------Dvfd~~F~~TRGGvSKAsk~inLSEDIFaG~N~~lRgG~I-------------~h~EY-iQcGKGR-- 796 (1270)
.|+|+| ++|+|+-.--|||..=-..++=-.==-=-||++.+-+|+| +|.-- ++++.++
T Consensus 47 ~~~g~~i~ld~~~l~~kiV~~~rGGyC~E~N~Lf~~lL~~LGf~v~~~~arV~~~~~~~~~~~~~~H~~l~V~i~~~~yl 126 (277)
T d1w4ta1 47 VLLDRPIEIDADKVFAKVVEGSRGGYCFELNSLFARLLLALGYELELLVARVRWGLPDDAPLTQQSHLMLRLYLAEGEFL 126 (277)
T ss_dssp HHTTCCCCCSHHHHHHHHTTTTCCBCHHHHHHHHHHHHHHTTCEEEEEEEEECTTCCTTSCCCCEEEEEEEEEETTEEEE
T ss_pred HHCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEEECCCEEE
T ss_conf 32399877999999999986577723451569999999986980699889997368888888887418999998990699
Q ss_pred -CCCCCCCCCEEEECCCCCCCCCCHHHHHHC
Q ss_conf -358632112000014776541000346611
Q 000813 797 -DVGLNQIAVFEGKVAGGNGEQVLSRDVYRL 826 (1270)
Q Consensus 797 -DvGl~qI~~FeaKIa~GnGEQ~LSRdvyrL 826 (1270)
||||+.-...+.=--.+-.+|.--.+.||+
T Consensus 127 vDvGfG~~~~~~Pl~l~~~~~~~~~~~~~r~ 157 (277)
T d1w4ta1 127 VDVGFGSANPPRALPLPGDEADAGQVHCVRL 157 (277)
T ss_dssp ECSCSGGGCCSSCEESSCCTTCTTCSEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 8403677685646237887531367517999
Done!