Your job contains 1 sequence.
>000814
MVSEANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLE
SPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTI
PPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKH
YCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNV
GQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIAR
DAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFF
SCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSS
LTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSII
LTSGTLSPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGY
KLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKK
RVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRS
SKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI
KQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELN
KSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMNDKNNHSIDS
SKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINT
QCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQAS
TQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQ
KRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQ
ISCSLCRSPLGLPENHLYVRCSVTSSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQ
LLTNQSFGGASGQGIWCEEDGCVYNTLFCPFCSSPSNCLGVQIVASNALNFQLLNKILFY
LDRLEIRIPESGKFKSEAKDSSPITHSAMDKVAAFSCIEKFSYSPILEDSGGWRSTKSKL
RLPKKGRGS
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000814
(1269 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2030497 - symbol:AT1G20720 species:3702 "Arabi... 1888 1.4e-304 3
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p... 556 4.2e-110 3
ZFIN|ZDB-GENE-081107-11 - symbol:brip1 "BRCA1 interacting... 506 2.2e-109 4
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p... 543 1.2e-108 3
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p... 506 8.1e-106 4
UNIPROTKB|J9NVZ8 - symbol:BRIP1 "Uncharacterized protein"... 504 2.1e-105 4
UNIPROTKB|D4ACW5 - symbol:Brip1 "Protein Brip1" species:1... 511 3.4e-105 4
UNIPROTKB|E2RHN5 - symbol:BRIP1 "Uncharacterized protein"... 504 4.3e-105 4
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein... 510 5.8e-105 4
UNIPROTKB|Q9BX63 - symbol:BRIP1 "Fanconi anemia group J p... 506 6.1e-104 4
UNIPROTKB|E1BNG9 - symbol:BRIP1 "Uncharacterized protein"... 500 2.5e-90 2
UNIPROTKB|F1MMS0 - symbol:BRIP1 "Uncharacterized protein"... 500 4.0e-89 3
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t... 484 2.8e-85 4
DICTYBASE|DDB_G0286621 - symbol:fncJ "DEAD/DEAH box helic... 395 6.0e-80 4
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"... 493 1.5e-72 3
UNIPROTKB|I3LBL1 - symbol:BRIP1 "Uncharacterized protein"... 503 2.7e-72 3
UNIPROTKB|B4L1Z2 - symbol:GI15901 "Regulator of telomere ... 394 3.5e-70 3
UNIPROTKB|Q16X92 - symbol:AAEL008960 "Regulator of telome... 402 1.2e-68 3
UNIPROTKB|E1BTS7 - symbol:Gga.49055 "Uncharacterized prot... 365 1.2e-67 3
UNIPROTKB|E1BTS6 - symbol:Gga.49055 "Uncharacterized prot... 365 1.5e-67 3
UNIPROTKB|F1NE49 - symbol:Gga.49055 "Uncharacterized prot... 365 1.5e-67 3
UNIPROTKB|B3MSG8 - symbol:GF20802 "Regulator of telomere ... 371 2.9e-67 3
UNIPROTKB|B3NSW1 - symbol:GG18780 "Regulator of telomere ... 356 8.2e-67 4
UNIPROTKB|B4GU19 - symbol:GL14463 "Regulator of telomere ... 363 1.5e-66 3
UNIPROTKB|Q29FS3 - symbol:GA17940 "Regulator of telomere ... 363 1.5e-66 3
UNIPROTKB|B4PZB4 - symbol:GE16425 "Regulator of telomere ... 356 4.4e-66 4
FB|FBgn0029798 - symbol:CG4078 species:7227 "Drosophila m... 353 5.0e-66 3
UNIPROTKB|B0W9F4 - symbol:CPIJ003765 "Regulator of telome... 395 5.5e-66 3
UNIPROTKB|B4M891 - symbol:GJ16649 "Regulator of telomere ... 357 2.3e-64 4
UNIPROTKB|E2RLA6 - symbol:RTEL1 "Uncharacterized protein"... 295 1.1e-63 4
MGI|MGI:2139369 - symbol:Rtel1 "regulator of telomere elo... 302 9.0e-61 4
TAIR|locus:2016209 - symbol:AT1G79950 species:3702 "Arabi... 475 1.3e-60 2
UNIPROTKB|Q6H1L8 - symbol:Rtel1 "Regulator of telomere el... 296 1.7e-59 4
UNIPROTKB|A4K436 - symbol:RTEL1 "Regulator of telomere el... 299 6.4e-59 3
UNIPROTKB|D4ACH4 - symbol:Rtel1 "Regulator of telomere el... 306 2.8e-58 4
RGD|1306721 - symbol:Rtel1 "regulator of telomere elongat... 306 4.8e-58 4
UNIPROTKB|B4NDG5 - symbol:GK24923 "Regulator of telomere ... 375 6.2e-58 2
ZFIN|ZDB-GENE-050306-11 - symbol:rtel1 "regulator of telo... 317 1.1e-57 3
WB|WBGene00001049 - symbol:dog-1 species:6239 "Caenorhabd... 294 2.8e-56 4
UNIPROTKB|Q9NZ71 - symbol:RTEL1 "Regulator of telomere el... 298 4.4e-56 3
UNIPROTKB|F6WH68 - symbol:RTEL1 "Protein RTEL1-TNFRSF6B" ... 298 8.0e-56 3
UNIPROTKB|B4JNS2 - symbol:GH24089 "Regulator of telomere ... 370 1.9e-55 3
UNIPROTKB|Q5RE34 - symbol:RTEL1 "Regulator of telomere el... 299 2.5e-55 3
UNIPROTKB|B4I0K4 - symbol:GM12432 "Regulator of telomere ... 356 3.6e-54 3
UNIPROTKB|Q7QEI1 - symbol:AGAP000634 "Regulator of telome... 366 1.9e-52 2
UNIPROTKB|D6RA96 - symbol:RTEL1-TNFRSF6B "Protein RTEL1-T... 298 2.6e-51 3
POMBASE|SPAC3G6.11 - symbol:chl1 "ATP-dependent DNA helic... 251 3.5e-44 4
UNIPROTKB|A8WS58 - symbol:rtel-1 "Regulator of telomere e... 303 5.4e-44 3
MGI|MGI:2443590 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/H... 207 4.1e-41 5
WB|WBGene00009124 - symbol:rtel-1 species:6239 "Caenorhab... 289 5.2e-41 3
UNIPROTKB|Q93575 - symbol:rtel-1 "Regulator of telomere e... 289 5.2e-41 3
ZFIN|ZDB-GENE-041114-191 - symbol:ddx11 "DEAD/H (Asp-Glu-... 200 8.4e-39 5
UNIPROTKB|A8MPP1 - symbol:DDX11L8 "Putative ATP-dependent... 193 5.7e-38 5
UNIPROTKB|F1NN99 - symbol:DDX11 "Uncharacterized protein"... 197 8.5e-38 5
CGD|CAL0004313 - symbol:orf19.2000 species:5476 "Candida ... 238 9.9e-37 3
UNIPROTKB|E1BL06 - symbol:E1BL06 "Uncharacterized protein... 172 2.3e-35 5
SGD|S000005929 - symbol:CHL1 "Probable DNA helicase" spec... 216 1.7e-34 3
UNIPROTKB|Q92771 - symbol:DDX12P "Putative ATP-dependent ... 179 1.8e-34 5
FB|FBgn0026876 - symbol:CG11403 species:7227 "Drosophila ... 243 2.8e-33 3
UNIPROTKB|E2RGR5 - symbol:DDX11 "Uncharacterized protein"... 183 4.0e-32 4
WB|WBGene00010839 - symbol:chl-1 species:6239 "Caenorhabd... 178 1.1e-31 5
TAIR|locus:2017894 - symbol:AT1G79890 species:3702 "Arabi... 172 1.1e-31 5
RGD|1306675 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) ... 198 3.7e-31 5
UNIPROTKB|F1SK84 - symbol:DDX11 "Uncharacterized protein"... 189 5.6e-29 4
UNIPROTKB|Q96FC9 - symbol:DDX11 "Probable ATP-dependent R... 161 3.4e-28 5
UNIPROTKB|F1MWN6 - symbol:RTEL1 "Regulator of telomere el... 208 2.0e-25 2
ASPGD|ASPL0000055138 - symbol:AN9436 species:162425 "Emer... 167 2.3e-24 5
TAIR|locus:1006230139 - symbol:AT2G05635 species:3702 "Ar... 286 9.3e-24 1
UNIPROTKB|F1N2P3 - symbol:ERCC2 "TFIIH basal transcriptio... 153 3.1e-22 4
UNIPROTKB|A6QLJ0 - symbol:ERCC2 "TFIIH basal transcriptio... 153 3.1e-22 4
ASPGD|ASPL0000038959 - symbol:AN10414 species:162425 "Eme... 188 2.7e-21 4
UNIPROTKB|F1PMH9 - symbol:ERCC2 "Uncharacterized protein"... 150 4.6e-21 4
UNIPROTKB|Q60452 - symbol:ERCC2 "TFIIH basal transcriptio... 140 7.8e-21 4
UNIPROTKB|P18074 - symbol:ERCC2 "TFIIH basal transcriptio... 138 2.6e-20 4
MGI|MGI:95413 - symbol:Ercc2 "excision repair cross-compl... 146 8.2e-20 3
RGD|1309109 - symbol:Ercc2 "excision repair cross-complem... 140 3.6e-19 3
SGD|S000000973 - symbol:RAD3 "5' to 3' DNA helicase" spec... 133 4.8e-19 5
POMBASE|SPAC1D4.12 - symbol:rad15 "transcription factor T... 163 1.2e-18 3
ZFIN|ZDB-GENE-040426-997 - symbol:ercc2 "excision repair ... 129 3.4e-18 3
UNIPROTKB|A8MX75 - symbol:ERCC2 "TFIIH basal transcriptio... 138 3.7e-18 4
CGD|CAL0002854 - symbol:RAD3 species:5476 "Candida albica... 129 6.4e-18 4
UNIPROTKB|Q5AFE9 - symbol:RAD3 "Putative uncharacterized ... 129 6.4e-18 4
UNIPROTKB|Q91941 - symbol:ERCC2/XPD "ERCC2/XPD protein" s... 126 1.4e-17 3
FB|FBgn0261850 - symbol:Xpd "Xeroderma pigmentosum D" spe... 126 2.2e-17 4
TAIR|locus:2014525 - symbol:UVH6 "ULTRAVIOLET HYPERSENSIT... 153 4.4e-17 4
UNIPROTKB|E7EVE9 - symbol:ERCC2 "TFIIH basal transcriptio... 116 1.8e-16 4
DICTYBASE|DDB_G0267414 - symbol:repD "transcription facto... 169 2.6e-16 3
UNIPROTKB|J9NWT1 - symbol:ERCC2 "Uncharacterized protein"... 150 1.6e-14 4
GENEDB_PFALCIPARUM|MAL13P1.134 - symbol:MAL13P1.134 "heli... 121 8.9e-13 5
UNIPROTKB|Q8IE72 - symbol:MAL13P1.134 "DEAD box helicase,... 121 8.9e-13 5
UNIPROTKB|J3KS24 - symbol:BRIP1 "Fanconi anemia group J p... 174 8.1e-12 1
UNIPROTKB|F1N0S0 - symbol:RTEL1 "Regulator of telomere el... 159 1.2e-11 4
UNIPROTKB|H0YFY8 - symbol:DDX11 "Probable ATP-dependent R... 161 2.0e-10 1
UNIPROTKB|K7EIT8 - symbol:ERCC2 "TFIIH basal transcriptio... 133 2.0e-10 2
UNIPROTKB|J3QKX0 - symbol:BRIP1 "Fanconi anemia group J p... 159 3.2e-10 1
UNIPROTKB|F5H235 - symbol:DDX11 "Probable ATP-dependent R... 128 8.3e-10 2
UNIPROTKB|C9K0E8 - symbol:DDX11 "Probable ATP-dependent R... 128 8.9e-10 2
WB|WBGene00021752 - symbol:Y50D7A.2 species:6239 "Caenorh... 131 1.9e-09 3
UNIPROTKB|B4DMS8 - symbol:DDX11 "Probable ATP-dependent R... 128 8.3e-08 2
UNIPROTKB|F1SK82 - symbol:F1SK82 "Uncharacterized protein... 145 1.3e-07 1
WARNING: Descriptions of 11 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2030497 [details] [associations]
symbol:AT1G20720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 EMBL:CP002684 GO:GO:0005739 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 KO:K15362 OMA:EKELDDS IPI:IPI00524588
RefSeq:NP_173495.5 UniGene:At.51696 ProteinModelPortal:F4HUN4
SMR:F4HUN4 PRIDE:F4HUN4 EnsemblPlants:AT1G20720.1 GeneID:838662
KEGG:ath:AT1G20720 Uniprot:F4HUN4
Length = 1175
Score = 1888 (669.7 bits), Expect = 1.4e-304, Sum P(3) = 1.4e-304
Identities = 360/547 (65%), Positives = 428/547 (78%)
Query: 4 EANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPT 63
E N + P N Y +GG+QVEFPYQPYG+QL FM RVISTLDRAQRDGHCHALLESPT
Sbjct: 13 EVKQTLNSKNPKNVYQIGGLQVEFPYQPYGTQLAFMSRVISTLDRAQRDGHCHALLESPT 72
Query: 64 GTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPS 123
GTGKSLSLLCS LAWQQN K + N+SHSK EA TDPL +GGGFIPE+QPS P S
Sbjct: 73 GTGKSLSLLCSVLAWQQNYKSRLLKGNLSHSKAAPEAATDPLNHGGGFIPETQPSDTPAS 132
Query: 124 TNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCT 183
TN + A+ A PTI+YASRTHSQI+QVI EY+KT YRVPMAVLASRKHYCT
Sbjct: 133 TNVEKAETA----TKKRTKIPTIYYASRTHSQITQVIREYRKTGYRVPMAVLASRKHYCT 188
Query: 184 NKYVRDKENIDEECKLLLGDR-NLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQ 242
N++V K+N+D+EC+LLL D+ N+ C +FKNV+K+ HPSLQ G +EVHDIEDLV VG+
Sbjct: 189 NRHVLGKDNVDDECRLLLKDKANIQCSEFKNVNKITSHPSLQPRGHNEVHDIEDLVKVGK 248
Query: 243 VVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDA 302
VRGC Y+A+ SMA++AQLVFCPYSYI+NPVIR +EVD+KGAI+I DEAHN+EDIAR+A
Sbjct: 249 NVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDLKGAIIIFDEAHNMEDIAREA 308
Query: 303 GSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSC 362
GS++++ED L KLQ ELEQ+ PMIYQPL E+ + L+ WI R+K +LAKR+FQH+FS
Sbjct: 309 GSINLEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDSLAKRDFQHYFSS 368
Query: 363 WTGDKALRELQEANISRQCFPILLECATKAI---KEATDTESELPHLSGMSVITLEGLFS 419
WTGDKALREL+E+NI+R+CFPILLEC TKAI KEA + ES++ +LSG+SV+TLE LFS
Sbjct: 369 WTGDKALRELEESNITRECFPILLECFTKAIRTSKEA-EMESDMLYLSGISVLTLEELFS 427
Query: 420 SLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
SLTYFFSRNGSH+ DYQL LQ+ KR +P G WTHT SLWC+NPAVVFKD+A+
Sbjct: 428 SLTYFFSRNGSHILDYQLGLQRSTKRG--DPSGTWTHTFSLWCMNPAVVFKDLADISLSV 485
Query: 480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADG 539
PMNSFSSELG+QFGT LEAPHVID ++QV IS GP NYPLNASYKTAD
Sbjct: 486 ILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAGAISNGPSNYPLNASYKTADA 545
Query: 540 YKLMEKL 546
Y + L
Sbjct: 546 YSFQDAL 552
Score = 721 (258.9 bits), Expect = 1.4e-304, Sum P(3) = 1.4e-304
Identities = 154/276 (55%), Positives = 189/276 (68%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
YKLMEKLC RWRET QWSRL KK LFVEP+GG+Q++F+ VLK YY+SI +G
Sbjct: 574 YKLMEKLCMRWRETEQWSRLCLKKDLFVEPRGGAQDEFDSVLKGYYDSI-RGKNKIIGRN 632
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGK---------------IVVGIPFPNIN 644
G + T E+Q+++ KKGA+FLAVCRGK I+VGIPFPN++
Sbjct: 633 RRAKKAG--PIKT-ETQDDS-KKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFPNLH 688
Query: 645 DIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQ 704
DIQV LKKKYNDTY+SSK+LL G+EWYC QA+RALNQA GRCIRHRFDYGAII LDER++
Sbjct: 689 DIQVGLKKKYNDTYKSSKSLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYK 748
Query: 705 EERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSS 764
E+RNRA ISKWLR+SIK YD+F+AS+EGL+SFF VK V KM E+S + SS
Sbjct: 749 EQRNRASISKWLRQSIKVYDNFEASMEGLRSFFNSVKEQVDSKMLGSQEDSVEK--NFSS 806
Query: 765 MDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSH 800
Q KE ++ Q NKS V+ + +P H
Sbjct: 807 EKQSKEFRRKENQIQNKSSQVEPKVEDYTNSNPKYH 842
Score = 356 (130.4 bits), Expect = 1.4e-304, Sum P(3) = 1.4e-304
Identities = 72/158 (45%), Positives = 104/158 (65%)
Query: 1115 LKQRQELCANVTSIPVIMTDISSVDQLLTNQ----SFGGASGQGIWCEEDGCVYNTLFCP 1170
LK+R+ + V + V +D + + NQ F G GQGIWCE+DGCV+NT++CP
Sbjct: 1011 LKRRKFTSSPVIDLEVENSDAPRPNCSMVNQRLCRKFEGLKGQGIWCEQDGCVFNTIYCP 1070
Query: 1171 FCSSPSNCLGVQIVASNALNFQLLNKILFYLDRLEIRIPESGKFKSEAKDSSPI--THSA 1228
FCS P+ CLGVQ++A+++ N Q L+KILF+ D LE+ + K S K P+ T++A
Sbjct: 1071 FCSIPNTCLGVQVMATDSSNVQFLSKILFFADHLEVTNEAASK-DSTLKHKEPLAETNAA 1129
Query: 1229 MDKVAAFSCIEKFSYSPILE-DSGGWRSTKSKLRLPKK 1265
+DK I++F+YSP + +SGGWR+TKSKLRLPK+
Sbjct: 1130 VDKSDVLKSIDRFAYSPNQQQESGGWRTTKSKLRLPKR 1167
Score = 229 (85.7 bits), Expect = 1.3e-252, Sum P(3) = 1.3e-252
Identities = 75/276 (27%), Positives = 129/276 (46%)
Query: 771 VTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERM 830
++K Q + D+ +++ + + F+ K Q V + + Q +S + E+
Sbjct: 756 ISKWLRQSIKVYDNFEASMEGLRSF--FNSVKEQ----VDSKMLGSQEDSVEKNFSSEKQ 809
Query: 831 NDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLN------LLDEVE--- 881
+ + + + + + K+ Y NS K H + +F G + + +++
Sbjct: 810 SKEFRRKENQIQNKSSQVEPKVEDYTNSNPKYHFMYESKAF-GYHRDVKPKIAEDLRSMG 868
Query: 882 --VQEFVQL-DRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNN 938
Q FVQ+ + C++ I+ +C +Q CE SS+ +E PE V+ET M +
Sbjct: 869 HSAQTFVQVKEEAECCREVIDLECGVQPDLGYCEVSSVTNCDEAPETSFVQETSGMINGI 928
Query: 939 TMASPGSLSKDGNSS-STIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVT 997
++ASP S S + +SS +T+ S SPDQL S N + P + +V T E+
Sbjct: 929 SVASPCSCSMNESSSPATVGLRSPGSPDQLLKQHISTPNFRKSPLGTESSVVATSERYSF 988
Query: 998 GDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDL 1033
G T +L E +SS + SVNS KRRK SP +DL
Sbjct: 989 GGTRSLTLEAESSFNMSVNSQALKRRKFTSSPVIDL 1024
Score = 46 (21.3 bits), Expect = 2.8e-233, Sum P(3) = 2.8e-233
Identities = 15/63 (23%), Positives = 25/63 (39%)
Query: 1011 LSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLS 1070
L S NS ++ M+ D + + EF + N ++NKS E + +
Sbjct: 777 LRSFFNSVKEQVDSKMLGSQEDSVEKNFSSEKQSKEFRRKENQIQNKSSQVEPKVEDYTN 836
Query: 1071 STP 1073
S P
Sbjct: 837 SNP 839
Score = 37 (18.1 bits), Expect = 3.0e-45, Sum P(3) = 3.0e-45
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 559 LNAKKPLFVEPKGGSQEDF 577
LN+K P V GG Q +F
Sbjct: 18 LNSKNPKNVYQIGGLQVEF 36
>UNIPROTKB|E1C1X9 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
Uniprot:E1C1X9
Length = 1249
Score = 556 (200.8 bits), Expect = 4.2e-110, Sum P(3) = 4.2e-110
Identities = 181/593 (30%), Positives = 278/593 (46%)
Query: 422 TYFFSR-NGSHVSDYQLALQKYI-KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
TY ++ N VSD K KR+ ++ H L+ WCLNPAV F D+ +
Sbjct: 564 TYAWTNDNQPDVSDTSAFFTKTKHKRNLRHK--TVVHMLNFWCLNPAVAFSDLNDVRTVV 621
Query: 480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASY----- 534
PM+SFSSELGV+F LEA HVI + QV I TGP+ L A++
Sbjct: 622 LTSGTLS-PMDSFSSELGVKFSIQLEANHVIR-NSQVWVGTIGTGPNGRKLCATFQHTET 679
Query: 535 ----------------KTADG-------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKG 571
K G YKL++KL +RW TG W L K + EP+G
Sbjct: 680 FEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDRWIHTGLWRNLELVKTVIAEPQG 739
Query: 572 GSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC 630
G++ DF+ +LK YY++I +G K + + L+ + ENA
Sbjct: 740 GAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGLDFCD--ENA----------- 786
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R I +GIPFPN+ D+QV LK+KYND +++++ LL G++WY QA+RALNQA+GRCIRHR
Sbjct: 787 RAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGLLPGSQWYEIQAYRALNQALGRCIRHR 846
Query: 691 FDYGAIILLDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSFF-RDVKGWVGKK 747
D+GA+IL+D+RF+ N+ +SKW+R+ ++ +++F ++LE L +F R+ KG
Sbjct: 847 SDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHENFGSALESLHAFAERNQKG----- 901
Query: 748 MFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISK-YDPFSHQKSQGN 806
+ N+V HV KE + + QE V+S + + P +H + N
Sbjct: 902 -IDFSSQCSNEVFHVPL--NSKEPSSASQQEATIHLSPDVPVKSEEQSFVPETHLTTTIN 958
Query: 807 FEVQTSLQTDQNNSCIEYIDLERMN----DKNNHSIDSSKGSTRKENKKLNSYDNSGQKL 862
+ ++Q + C + +D+E + + H + + K KK + ++ K
Sbjct: 959 -SINPG-PSNQPDRCGQKVDVESCSHNGIQRRKHMDSTPRRPANKTEKKSDRTNSDFMKE 1016
Query: 863 HSSVK-YDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNE 921
H K S P + V Q V+S + I Q S S+P S+
Sbjct: 1017 HCCFKPLTSTPLPVATNCVSTASSKQRKNVNSASELIGGVNQCQSSFTLEHKPSIPESHL 1076
Query: 922 DPELLLVKETPA------MDDNNTMASPGSL--SKDGNSSSTIFQASTQSPDQ 966
+ VK T A +D+ P S S G ++ + S + D+
Sbjct: 1077 ETTNFSVKSTEAPVAEEHLDEQKLQIEPCSELPSVGGRPELSVLEISAEDEDE 1129
Score = 501 (181.4 bits), Expect = 4.2e-110, Sum P(3) = 4.2e-110
Identities = 116/321 (36%), Positives = 175/321 (54%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKE-NIDEEC-KLL 200
P IF+ +RTH QI+Q+ E K+TAY VPM +L+SR + C + V N +E C +LL
Sbjct: 253 PKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELL 312
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKG-GCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
G C + VHK+ H +LQ ++ DIEDLV++G+ +R C Y+AAR + A
Sbjct: 313 EGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMVGA 372
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMEL 319
+VFCPY+Y+++P IR +ME+++KG ++ILDEAHNIED AR+A S + E L + EL
Sbjct: 373 DIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAAREEL 432
Query: 320 EQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANI 377
+ + + N ++ L M L W+ + L + ++ W+G + L + I
Sbjct: 433 DFMVNNNIRQKDHEQLRAMCCSLTNWLRESSSQLVETGYETSCKVWSGKEMLNHFHDMGI 492
Query: 378 SRQCFPIL-------LECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
+ FPIL LE K + E+P +S + I L+GLF L Y F N
Sbjct: 493 TNISFPILQKHLSAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGLFMVLLYLFKDNSR 552
Query: 431 HVSDYQLALQK-YIKRDSKNP 450
DY++ALQ+ Y + P
Sbjct: 553 FADDYRVALQQTYAWTNDNQP 573
Score = 174 (66.3 bits), Expect = 4.2e-110, Sum P(3) = 4.2e-110
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 15 LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74
++ Y +GG+++ FP + Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS
Sbjct: 5 VSQYTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNRQ---HC--LLESPTGSGKSLALLCS 59
Query: 75 TLAWQQNCKLKNQLANISHSKPDTE 99
L+WQQ+ K+ L + S K D E
Sbjct: 60 ALSWQQSLYEKSLLKS-SCEKEDRE 83
Score = 44 (20.5 bits), Expect = 3.9e-62, Sum P(3) = 3.9e-62
Identities = 24/99 (24%), Positives = 36/99 (36%)
Query: 102 TDPLANGGG-FIPESQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVI 160
T ANG FIP+ T T+ Q AQ+ P +SR ++ I V+
Sbjct: 241 TKKKANGDQTFIPKIFFGT---RTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVV 297
Query: 161 SEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKL 199
S + + +L KH + Y + E L
Sbjct: 298 SSSNSNRNELCVELLEG-KHGKSCLYYHGVHKLSEHYAL 335
Score = 41 (19.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYD-----PF-SHQKSQGNFEVQTSLQTDQNNSCI 822
K++ Q T+EL ++ +SG + +S D P S S N L+ SC+
Sbjct: 263 KQIA-QITRELKRTAYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELLEGKHGKSCL 321
Query: 823 EYIDLERMND 832
Y + ++++
Sbjct: 322 YYHGVHKLSE 331
Score = 40 (19.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 31/145 (21%), Positives = 57/145 (39%)
Query: 712 ISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEV 771
++ WLR+S Q +E + K W GK+M N D + ++S K +
Sbjct: 455 LTNWLRESSSQL------VE--TGYETSCKVWSGKEMLNHFH--DMGITNISFPILQKHL 504
Query: 772 TKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEY-IDLERM 830
+ +E S + + I + +G F V L D + +Y + L++
Sbjct: 505 SAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGLFMVLLYLFKDNSRFADDYRVALQQT 564
Query: 831 ----NDKNNHSIDSSKGSTRKENKK 851
ND D+S T+ ++K+
Sbjct: 565 YAWTNDNQPDVSDTSAFFTKTKHKR 589
>ZFIN|ZDB-GENE-081107-11 [details] [associations]
symbol:brip1 "BRCA1 interacting protein C-terminal
helicase 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-081107-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:EF088194
IPI:IPI00877443 RefSeq:NP_001103766.1 UniGene:Dr.85128
ProteinModelPortal:A8QLH7 STRING:A8QLH7 GeneID:794038
KEGG:dre:794038 NextBio:20931680 ArrayExpress:A8QLH7 Uniprot:A8QLH7
Length = 1217
Score = 506 (183.2 bits), Expect = 2.2e-109, Sum P(4) = 2.2e-109
Identities = 111/311 (35%), Positives = 178/311 (57%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
P IF+ +RTH QI+Q+ E K+T Y VPM +L+SR H C + V N +E CK L
Sbjct: 272 PKIFFGTRTHKQITQIARELKRTLYSTVPMTILSSRDHTCVHPEVVPHANRNERCKEFLE 331
Query: 203 DRN-LGCPQFKNVHKVRGHPSLQ-KGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+N C + NVHK+R +LQ G H+ DIE+LV +G +R C+YYAAR + +A
Sbjct: 332 AKNGRSCRYYHNVHKMRDQSTLQWVHGLHQAWDIEELVRLGGKLRSCAYYAARELMQEAC 391
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
+VFCPY+Y+++P+IR +ME+++K I++LDEAHNIED AR++ S +++ LL + E++
Sbjct: 392 IVFCPYNYLLDPLIRESMEINLKEQIVVLDEAHNIEDCARESASFTLNQAQLLLARDEID 451
Query: 321 QVCSVNPMI--YQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANIS 378
+ + N ++PL+ L W++ L +RE++ WTG + L + I+
Sbjct: 452 GMVTHNIRRDQHRPLLAFCCSLTNWVQESCGGLEEREYESSCKVWTGVEVLGIFRGLGIT 511
Query: 379 RQCFPILLECATKAI-KE-------ATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
FP+L + + KE + ++P +S + L+ LF L + F +N
Sbjct: 512 ADTFPLLQKNLAAVLEKEERVGLVNGREETVQVPTISSNTQSMLKSLFMVLEFLFRQNCR 571
Query: 431 HVSDYQLALQK 441
DY++ALQ+
Sbjct: 572 FADDYRVALQQ 582
Score = 409 (149.0 bits), Expect = 2.2e-109, Sum P(4) = 2.2e-109
Identities = 83/208 (39%), Positives = 126/208 (60%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
YK+++KL +RW TG W +L K + EP+GG + DF+ +L+ YY +I +G+
Sbjct: 727 YKMLDKLRDRWTNTGLWDKLEECKTVITEPRGGGKGDFDELLQTYYEAI-RGT------- 778
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAV-CRGKIVVGIPFPNINDIQVSLKKKYNDTY 658
E + + +G F R + +GIPFPNI D+QV LK KYND +
Sbjct: 779 -AAKGEKRDGALLVAVCRGKVSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDKH 837
Query: 659 RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHISKWL 716
S+ LL G WY QA+RALNQA+GRCIRHR D+GA+IL+D+RF+ N+ +SKW+
Sbjct: 838 AKSRGLLPGGRWYEIQAYRALNQALGRCIRHRNDWGALILVDDRFRTNPNKYITGLSKWV 897
Query: 717 RKSIKQYDSFDASLEGLKSFFRDVKGWV 744
R+ ++ +D+F +++ L+SF + +G V
Sbjct: 898 RQLVRHHDTFTGAMQSLESFSQGQRGAV 925
Score = 183 (69.5 bits), Expect = 2.2e-109, Sum P(4) = 2.2e-109
Identities = 39/103 (37%), Positives = 53/103 (51%)
Query: 444 KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTC 503
+R N HTLS WCLNPAV F D++ PM SFSSELG++F
Sbjct: 604 RRRQSNRTKTLVHTLSFWCLNPAVAFSDLSSTVRSIVLTSGTLSPMGSFSSELGIKFSIQ 663
Query: 504 LEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKL 546
LEA HVI+ QV I GP L A+++ A+ + +++
Sbjct: 664 LEANHVINKS-QVWVGTIGAGPQGRKLCATFQHAETFAFQDEV 705
Score = 176 (67.0 bits), Expect = 2.2e-109, Sum P(4) = 2.2e-109
Identities = 40/87 (45%), Positives = 51/87 (58%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FP + Y SQL M +I L+ Q HC LLESPTG+GKSL+LLCS LA
Sbjct: 8 YTIGGVKINFPCKAYPSQLAMMNSIIRGLNNGQ---HC--LLESPTGSGKSLALLCSALA 62
Query: 78 WQQNCKLKNQLANISHSKPDTEAVTDP 104
WQQ +K Q A + V P
Sbjct: 63 WQQAQFVKEQDAGTGFADCKKSGVVTP 89
Score = 47 (21.6 bits), Expect = 3.7e-57, Sum P(3) = 3.7e-57
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 431 HVSDYQLALQ-KYIKRDSKN----PGGNWTHTLSLWCLNPAV 467
++ D Q+ L+ KY + +K+ PGG W + LN A+
Sbjct: 821 NIKDLQVELKMKYNDKHAKSRGLLPGGRWYEIQAYRALNQAL 862
Score = 38 (18.4 bits), Expect = 3.2e-56, Sum P(3) = 3.2e-56
Identities = 16/51 (31%), Positives = 23/51 (45%)
Query: 1009 SSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSK 1059
S LSS+V S + S ++ M S E + E N+V NKS+
Sbjct: 630 SDLSSTVRSIV------LTSGTLSPMGSFSSELGIKFSIQLEANHVINKSQ 674
Score = 38 (18.4 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 16/71 (22%), Positives = 32/71 (45%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYD-----PFSHQKSQGNFEVQTSLQTDQNNSCIE 823
K++T Q +EL ++ +S + +S D P + N + L+ SC
Sbjct: 282 KQIT-QIARELKRTLYSTVPMTILSSRDHTCVHPEVVPHANRNERCKEFLEAKNGRSCRY 340
Query: 824 YIDLERMNDKN 834
Y ++ +M D++
Sbjct: 341 YHNVHKMRDQS 351
>UNIPROTKB|Q3YK19 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
Length = 1252
Score = 543 (196.2 bits), Expect = 1.2e-108, Sum P(3) = 1.2e-108
Identities = 179/592 (30%), Positives = 274/592 (46%)
Query: 422 TYFFSR-NGSHVSDYQLALQKYI-KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
TY ++ N VSD K KR+ ++ H L+ WCLNPAV F D+ +
Sbjct: 564 TYAWTNDNQPDVSDTSAFFTKTKHKRNLRHK--TVVHMLNFWCLNPAVAFSDLNDVRTVV 621
Query: 480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASY----- 534
PM+SFSSELGV+F LEA HVI + QV I TGP+ L A++
Sbjct: 622 LTSGTLS-PMDSFSSELGVKFSIQLEANHVIR-NSQVWVGTIGTGPNGRKLCATFQHTET 679
Query: 535 ----------------KTADG-------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKG 571
K G YKL++KL +RW TG W L K + EP+G
Sbjct: 680 FEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDRWIHTGLWRNLELVKTVIAEPQG 739
Query: 572 GSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC 630
G++ DF+ +LK YY++I +G K + + L+ + ENA
Sbjct: 740 GAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSEGLDFCD--ENA----------- 786
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R I +GIPFPN+ D+QV LK+KYND +++++ LL G++WY QA+RALNQA+GRCIRHR
Sbjct: 787 RAVITIGIPFPNVKDLQVELKRKYNDQHKTTRGLLPGSQWYEIQAYRALNQALGRCIRHR 846
Query: 691 FDYGAIILLDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSFF-RDVKGWVGKK 747
D+GA+IL+D+RF+ N+ +SKW+R+ ++ +++F ++LE L +F R+ KG
Sbjct: 847 SDWGALILVDDRFRNNPNKYITGLSKWIRQQVQHHENFGSALESLHAFAERNQKG----- 901
Query: 748 MFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNF 807
+ N+V HV KE + + QE + H +V S+ F + +
Sbjct: 902 -IDFSSQCSNEVFHVPL--NSKEPSSASQQEA--TIHLSPDVPVKSEEQSFVPE-THLTT 955
Query: 808 EVQTSLQTDQNNSCIEYIDLERMN----DKNNHSIDSSKGSTRKENKKLNSYDNSGQKLH 863
+ + N + +D+E + + H + + K KK + ++ K H
Sbjct: 956 TINSINPGPSNQPGGQKVDVESCSHNGIQRRKHMDSTPRRPANKTEKKSDRTNSDFMKEH 1015
Query: 864 SSVK-YDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNED 922
K S P + V Q V+S + I Q S S+P S+ +
Sbjct: 1016 CCFKPLTSTPLPVATNCVSTASSKQRKNVNSASELIGGVNQCQSSFTLEHKPSIPESHLE 1075
Query: 923 PELLLVKETPA------MDDNNTMASPGSL--SKDGNSSSTIFQASTQSPDQ 966
VK T A +D+ P S S G ++ + S + D+
Sbjct: 1076 TTNFSVKSTEAPVAEEHLDEQKLQIEPCSELPSVGGRPELSVLEISAEDEDE 1127
Score = 501 (181.4 bits), Expect = 1.2e-108, Sum P(3) = 1.2e-108
Identities = 116/321 (36%), Positives = 175/321 (54%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKE-NIDEEC-KLL 200
P IF+ +RTH QI+Q+ E K+TAY VPM +L+SR + C + V N +E C +LL
Sbjct: 253 PKIFFGTRTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELL 312
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKG-GCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
G C + VHK+ H +LQ ++ DIEDLV++G+ +R C Y+AAR + A
Sbjct: 313 EGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSLGKKLRACPYFAARELMVGA 372
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMEL 319
+VFCPY+Y+++P IR +ME+++KG ++ILDEAHNIED AR+A S + E L + EL
Sbjct: 373 DIVFCPYNYLLDPQIRESMEINLKGQVVILDEAHNIEDSAREAVSYSVTESQLNAAREEL 432
Query: 320 EQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANI 377
+ + + N ++ L M L W+ + L + ++ W+G + L + I
Sbjct: 433 DFMVNNNIRQKDHEQLRAMCCSLTNWLRESSSQLVETGYETSCKVWSGKEMLNHFHDMGI 492
Query: 378 SRQCFPIL-------LECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
+ FPIL LE K + E+P +S + I L+GLF L Y F N
Sbjct: 493 TNISFPILQKHLSAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGLFMVLLYLFKDNSR 552
Query: 431 HVSDYQLALQK-YIKRDSKNP 450
DY++ALQ+ Y + P
Sbjct: 553 FADDYRVALQQTYAWTNDNQP 573
Score = 174 (66.3 bits), Expect = 1.2e-108, Sum P(3) = 1.2e-108
Identities = 39/85 (45%), Positives = 55/85 (64%)
Query: 15 LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74
++ Y +GG+++ FP + Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS
Sbjct: 5 VSQYTIGGVKIMFPCKAYPSQLAMMNAIVKGLNNRQ---HC--LLESPTGSGKSLALLCS 59
Query: 75 TLAWQQNCKLKNQLANISHSKPDTE 99
L+WQQ+ K+ L + S K D E
Sbjct: 60 ALSWQQSLYEKSLLKS-SCEKEDRE 83
Score = 44 (20.5 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 24/99 (24%), Positives = 36/99 (36%)
Query: 102 TDPLANGGG-FIPESQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVI 160
T ANG FIP+ T T+ Q AQ+ P +SR ++ I V+
Sbjct: 241 TKKKANGDQTFIPKIFFGT---RTHKQIAQITRELKRTAYSGVPMTILSSRDYTCIHPVV 297
Query: 161 SEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKL 199
S + + +L KH + Y + E L
Sbjct: 298 SSSNSNRNELCVELLEG-KHGKSCLYYHGVHKLSEHYAL 335
Score = 41 (19.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYD-----PF-SHQKSQGNFEVQTSLQTDQNNSCI 822
K++ Q T+EL ++ +SG + +S D P S S N L+ SC+
Sbjct: 263 KQIA-QITRELKRTAYSGVPMTILSSRDYTCIHPVVSSSNSNRNELCVELLEGKHGKSCL 321
Query: 823 EYIDLERMND 832
Y + ++++
Sbjct: 322 YYHGVHKLSE 331
Score = 40 (19.1 bits), Expect = 6.1e-07, Sum P(3) = 6.1e-07
Identities = 31/145 (21%), Positives = 57/145 (39%)
Query: 712 ISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEV 771
++ WLR+S Q +E + K W GK+M N D + ++S K +
Sbjct: 455 LTNWLRESSSQL------VE--TGYETSCKVWSGKEMLNHFH--DMGITNISFPILQKHL 504
Query: 772 TKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEY-IDLERM 830
+ +E S + + I + +G F V L D + +Y + L++
Sbjct: 505 SAVLEKEEKISMFGKEELVEIPIVSSATQIVLKGLFMVLLYLFKDNSRFADDYRVALQQT 564
Query: 831 ----NDKNNHSIDSSKGSTRKENKK 851
ND D+S T+ ++K+
Sbjct: 565 YAWTNDNQPDVSDTSAFFTKTKHKR 589
>UNIPROTKB|J3QSE8 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
Length = 994
Score = 506 (183.2 bits), Expect = 8.1e-106, Sum P(4) = 8.1e-106
Identities = 123/379 (32%), Positives = 201/379 (53%)
Query: 83 KLKNQLANISHSKPDTEAVTDPLANGGGFIPESQP---STIPPST---NGQTAQVAMXXX 136
++ N A + K T + PL F P+ P S ST N Q + +
Sbjct: 179 EVHNLDAKVDSGK--TVKLNSPLEKINSFSPQKPPGHCSRCCCSTKQGNSQESSNTIKKD 236
Query: 137 XXXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDE 195
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E
Sbjct: 237 HTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNE 296
Query: 196 ECKLLLGDRN-LGCPQFKNVHKVRGHPSLQ--KGGCHEVHDIEDLVNVGQVVRGCSYYAA 252
+C LL +N C + VHK+ +LQ +G C + DIE+LV++G+ ++ C YY A
Sbjct: 297 KCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMC-KAWDIEELVSLGKKLKACPYYTA 355
Query: 253 RSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVL 312
R + DA ++FCPY+Y+++ IR +M++++K ++ILDEAHNIED AR++ S + E L
Sbjct: 356 RELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQL 415
Query: 313 LKLQMELEQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALR 370
+ EL+ + + N ++PL + L+ W+E L +R+++ W+G++ L
Sbjct: 416 RFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLL 475
Query: 371 ELQEANISRQCFPILLECATKAI-KE-------ATDTESELPHLSGMSVITLEGLFSSLT 422
L + I+ FPIL + + KE + E+P +S + I L+GLF L
Sbjct: 476 TLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLD 535
Query: 423 YFFSRNGSHVSDYQLALQK 441
Y F +N DY++A+Q+
Sbjct: 536 YLFRQNSRFADDYKIAIQQ 554
Score = 505 (182.8 bits), Expect = 8.1e-106, Sum P(4) = 8.1e-106
Identities = 133/379 (35%), Positives = 197/379 (51%)
Query: 422 TYFFSRNGSHVSDYQ--LALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
TY ++ N +SD L L K KR + H L+ WCLNPAV F D+
Sbjct: 555 TYSWT-NQIDISDKNGLLVLPKNKKRSRQKTA---VHVLNFWCLNPAVAFSDINGKVQTI 610
Query: 480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD- 538
PM SFSSELGV F LEA H+I + QV I +GP L A+++ +
Sbjct: 611 VLTSGTLSPMKSFSSELGVTFTIQLEANHIIK-NSQVWVGTIGSGPKGRNLCATFQNTET 669
Query: 539 ---------------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKG 571
YKL+EKL RW TG W L K + VEP+G
Sbjct: 670 FEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQG 729
Query: 572 GSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC 630
G + +F+ +L+ YY++I +G K + + L+ S +NA
Sbjct: 730 GEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDF--SDDNA----------- 776
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R I +GIPFPN+ D+QV LK++YND + + LL G +WY QA+RALNQA+GRCIRHR
Sbjct: 777 RAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHR 836
Query: 691 FDYGAIILLDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKM 748
D+GA+IL+D+RF+ +R + +SKW+R+ I+ + +F+++LE L F + +K+
Sbjct: 837 NDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKK-----HQKV 891
Query: 749 FN-GLENSDNDVDHVSSMD 766
N +++ N D+ S+++
Sbjct: 892 LNVSIKDRTNIQDNESTLE 910
Score = 174 (66.3 bits), Expect = 8.1e-106, Sum P(4) = 8.1e-106
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS LA
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQ---HC--LLESPTGSGKSLALLCSALA 62
Query: 78 WQQN 81
WQQ+
Sbjct: 63 WQQS 66
Score = 58 (25.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 26/105 (24%), Positives = 51/105 (48%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNF---EVQTSLQTDQNN-SCIE 823
K++ Q T+EL ++ +SG + +S D H + GNF E L +N SC
Sbjct: 254 KQIA-QITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF 312
Query: 824 YIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY 868
Y + +++D+ H++ + +G + + + + G+KL + Y
Sbjct: 313 YHGVHKISDQ--HTLQTFQGMCKAWD--IEELVSLGKKLKACPYY 353
Score = 46 (21.3 bits), Expect = 8.1e-106, Sum P(4) = 8.1e-106
Identities = 21/101 (20%), Positives = 46/101 (45%)
Query: 763 SSMDQCKEVTKQNTQELNKSDHSGQNVQ---SISKYDPFSHQKSQGNFEVQTSLQT---- 815
S+++ E +K++ + LN S N+Q S + + S E + L
Sbjct: 876 SALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFV 935
Query: 816 -DQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSY 855
D+ C++ + ++ KN+ + SS S ++++ K +S+
Sbjct: 936 EDEAKICVQELQCPKIITKNS-PLPSSIISRKEKSMKSSSH 975
Score = 44 (20.5 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 695 AIILLDER--FQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGK--KMFN 750
A I DE FQ E+ R + ++ I++ F + L D K GK K+ +
Sbjct: 144 ASIYRDENDDFQVEKKRIRPLETTQQ-IRKRHCFGTEVHNL-----DAKVDSGKTVKLNS 197
Query: 751 GLE--NSDNDVDHVSSMDQCKEVTKQ-NTQELN---KSDHSGQN 788
LE NS + +C TKQ N+QE + K DH+G++
Sbjct: 198 PLEKINSFSPQKPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKS 241
Score = 43 (20.2 bits), Expect = 6.5e-08, Sum P(2) = 6.5e-08
Identities = 28/133 (21%), Positives = 51/133 (38%)
Query: 898 INTQCSLQKSSRCCEASSMPFSNEDPELLLVKE-----TPAMDDNNTMASPGSLSKDGNS 952
++ + +Q S CC S F+N D + TP + N T S +D
Sbjct: 76 VSEKAEVQLSC-CCACHSKDFTNNDMNQGTSRHFNYPSTPPSERNGT----SSTCQDSPE 130
Query: 953 SSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPE---KEVTG-DTSNLPPERD 1008
+T+ A + Q S++ + +V + T + + G + NL + D
Sbjct: 131 KTTL-AAKLSAKKQASIYRDE-NDDFQVEKKRIRPLETTQQIRKRHCFGTEVHNLDAKVD 188
Query: 1009 SSLSSSVNSHTQK 1021
S + +NS +K
Sbjct: 189 SGKTVKLNSPLEK 201
Score = 37 (18.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 151 RTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENI 193
RT+ Q ++ E Y +L + H +V D+ I
Sbjct: 899 RTNIQDNESTLEVTSLKYSTSPYLLEAASHLSPENFVEDEAKI 941
>UNIPROTKB|J9NVZ8 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AAEX03006594 EMBL:AAEX03006595
EMBL:AAEX03006596 Ensembl:ENSCAFT00000045493 Uniprot:J9NVZ8
Length = 1214
Score = 504 (182.5 bits), Expect = 2.1e-105, Sum P(4) = 2.1e-105
Identities = 119/373 (31%), Positives = 198/373 (53%)
Query: 89 ANISHSKPDTEAVTDPLANGGGFIPESQP---STIPPST---NGQTAQVAMXXXXXXXXM 142
A ++ K T + PL F P++ P S ST + Q +
Sbjct: 184 AKVASGK--TTKLNSPLEKINSFSPQNPPGHCSRCCCSTKQGSNQDSSNTTKKDHGGKSK 241
Query: 143 TPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLL 201
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E+C LL
Sbjct: 242 IPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELL 301
Query: 202 GDRN-LGCPQFKNVHKVRGHPSLQ--KGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADD 258
+N C + VHK+ +LQ +G C + DIE+LV++G+ ++ C YY AR + +D
Sbjct: 302 DGKNGKSCYFYHGVHKISNQHTLQTLQGMC-KAWDIEELVSLGKKLKACPYYTARELIED 360
Query: 259 AQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
A ++FCPY+Y+++ IR +M++++K ++ILDEAHNIED AR++ S + E L + E
Sbjct: 361 AHIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDE 420
Query: 319 LEQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEAN 376
L+ + + N ++PL + L+ W+E L +R+++ W+G + + L +
Sbjct: 421 LDSMVNNNIRKKNHEPLRAVCYSLINWLEANSEHLVERDYESSCKIWSGSEMVLNLHKMG 480
Query: 377 ISRQCFPIL-------LECATKAIK-EATDTESELPHLSGMSVITLEGLFSSLTYFFSRN 428
I+ FPIL L+ K + + E+P +S + I L+GLF Y F +N
Sbjct: 481 ITTATFPILQGHFSAVLQKEEKVLPIHGKEETREVPIISASTQIMLKGLFMVFDYLFRQN 540
Query: 429 GSHVSDYQLALQK 441
DY++A+Q+
Sbjct: 541 SRFADDYKVAIQQ 553
Score = 502 (181.8 bits), Expect = 2.1e-105, Sum P(4) = 2.1e-105
Identities = 120/314 (38%), Positives = 169/314 (53%)
Query: 456 HTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ 515
H L+ WCLNPAV F D+ PM SFSSELGV F LEA HVI+ + Q
Sbjct: 586 HVLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVIN-NSQ 644
Query: 516 VLTSVISTGPDNYPLNASYKTAD----------------------------GYKLMEKLC 547
V I +GP L A+++ + YKL+EKL
Sbjct: 645 VWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKLK 704
Query: 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEG 606
RW TG W L K + VEP+GG + DF +L+ YY++I +G K +
Sbjct: 705 ERWLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALLVAVCRGKV 764
Query: 607 NNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLS 666
+ L+ S +NA R I +GIPFPN+ D+QV LK++YND + + LL
Sbjct: 765 SEGLDF--SDDNA-----------RAVITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLP 811
Query: 667 GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHISKWLRKSIKQYD 724
G +WY QA+RALNQA+GRCIRH+ D+GA+IL+D+RF+ +R + +SKW+R+ I+ +
Sbjct: 812 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQIQHHS 871
Query: 725 SFDASLEGLKSFFR 738
+F+++LE L F R
Sbjct: 872 TFESALESLSDFSR 885
Score = 186 (70.5 bits), Expect = 2.1e-105, Sum P(4) = 2.1e-105
Identities = 40/83 (48%), Positives = 56/83 (67%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCSTLA
Sbjct: 8 YTIGGVKITFPYKAYPSQLAMMNSIVRGLNSKQ---HC--LLESPTGSGKSLALLCSTLA 62
Query: 78 WQQNCKLKNQLANISHSKPDTEA 100
WQQ+ + +L + S SK + +
Sbjct: 63 WQQS--VSGKLVDESLSKTEVSS 83
Score = 57 (25.1 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNF---EVQTSLQTDQNN-SCIE 823
K++ Q T+EL ++ +SG + +S D H + GNF E L +N SC
Sbjct: 253 KQIA-QITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF 311
Query: 824 YIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY 868
Y + +++ N H++ + +G + + + + G+KL + Y
Sbjct: 312 YHGVHKIS--NQHTLQTLQGMCKAWD--IEELVSLGKKLKACPYY 352
Score = 46 (21.3 bits), Expect = 3.9e-10, Sum P(3) = 3.9e-10
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 856 DNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASS 915
+N +K H ++ + +N L E + V+ D SSCK + ++ L ++
Sbjct: 427 NNIRKKNHEPLRAVCYSLINWL-EANSEHLVERDYESSCKIWSGSEMVLNLHKMGITTAT 485
Query: 916 MPFSNEDPELLLVKE 930
P +L KE
Sbjct: 486 FPILQGHFSAVLQKE 500
Score = 44 (20.5 bits), Expect = 2.1e-105, Sum P(4) = 2.1e-105
Identities = 27/131 (20%), Positives = 51/131 (38%)
Query: 746 KKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQG 805
K++F E D D++ ++ K T E D S S YDP + +
Sbjct: 1085 KQLFCCEEAVDPDIELSLLGEEAKSSTSHRASETEAEDES--IYFSPELYDPADTNEEKN 1142
Query: 806 NF-EVQTSLQTDQNNSCIEYIDL-ERMNDKNNHSIDSSKG---STRKENKKLNSYDNSGQ 860
E + +++CI DL E K S+ K + N+ ++ ++
Sbjct: 1143 ELVESDRDNRFVDHSNCILVEDLFEIRTIKGVDSVQEMKAEDCTVTTLNRLMHIKESKID 1202
Query: 861 KLHSSVKYDSF 871
+ S++K +S+
Sbjct: 1203 NIDSNMKKNSY 1213
Score = 44 (20.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 18/85 (21%), Positives = 38/85 (44%)
Query: 193 IDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCH-EVHDIEDLVN-------VGQVV 244
+ ++C+ N C Q + + V+ +L K C ++ E+ V+ +G+
Sbjct: 1048 LTDKCESSSPMLNASCSQSEVISSVKIDSTLLKRNCSKQLFCCEEAVDPDIELSLLGEEA 1107
Query: 245 RGC-SYYAARSMADDAQLVFCPYSY 268
+ S+ A+ + A+D + F P Y
Sbjct: 1108 KSSTSHRASETEAEDESIYFSPELY 1132
Score = 38 (18.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 907 SSRCCEASSMPFSNED 922
SS CC S F+N D
Sbjct: 83 SSCCCACHSKNFTNID 98
Score = 38 (18.4 bits), Expect = 3.1e-08, Sum P(3) = 3.1e-08
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 769 KEVTKQNTQELNKSDHSGQN 788
K+ + Q++ K DH G++
Sbjct: 221 KQGSNQDSSNTTKKDHGGKS 240
>UNIPROTKB|D4ACW5 [details] [associations]
symbol:Brip1 "Protein Brip1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 TIGRFAMs:TIGR00604 OrthoDB:EOG4J6RQ8 IPI:IPI00372668
Ensembl:ENSRNOT00000038829 ArrayExpress:D4ACW5 Uniprot:D4ACW5
Length = 1170
Score = 511 (184.9 bits), Expect = 3.4e-105, Sum P(4) = 3.4e-105
Identities = 106/311 (34%), Positives = 178/311 (57%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEEC-KLLL 201
P I++ +RTH QI+Q+ E +KTAY VPM +L+SR H C + V N +E+C +LL
Sbjct: 245 PKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLD 304
Query: 202 GDRNLGCPQFKNVHKVRGHPSLQ-KGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
G C + VH++ +LQ G + DIE+LV++G+ ++ C YY AR + D A
Sbjct: 305 GKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSLGRKLKACPYYTARELIDSAD 364
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
++FCPY+Y+++ IR +M++ +K ++ILDEAHNIE+ AR+ S + E L + EL+
Sbjct: 365 IIFCPYNYLLDSQIRESMDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDELD 424
Query: 321 QVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANIS 378
+ + N ++PL ++ +L+ W+E L +R+++ W+G++ L L I+
Sbjct: 425 SLINSNIRKKSHEPLRDVCYNLINWLETNSKNLVERDYESSCKIWSGNEMLLNLHRMGIT 484
Query: 379 RQCFPIL---LECATKAIKEATDTES-----ELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
FP+L L + ++ T T ++P +S + I L+GLF L Y F +N
Sbjct: 485 AASFPVLQKHLSAVLQKEEKVTSTHGKEEAIQIPIISASTQIMLKGLFMVLDYLFRKNSR 544
Query: 431 HVSDYQLALQK 441
DY++A+Q+
Sbjct: 545 FADDYKVAIQQ 555
Score = 484 (175.4 bits), Expect = 3.4e-105, Sum P(4) = 3.4e-105
Identities = 118/324 (36%), Positives = 172/324 (53%)
Query: 444 KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTC 503
K+ S+ G + L+ WCLNPAV F D+ + P+ SFSSELGV F
Sbjct: 578 KKHSRQKIG--VNVLNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQ 635
Query: 504 LEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD------------------------- 538
LEA HVI + QV + +GP L A+++ +
Sbjct: 636 LEANHVIS-NSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILC 694
Query: 539 ---GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSIS-QGSKC 594
YKL+EKL RW TG W L + K + EP+GG + DF+ +L+ YY++I +G K
Sbjct: 695 FLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKD 754
Query: 595 AXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY 654
+ + L+ S +NA R I +GIPFPN+ D+QV LK++Y
Sbjct: 755 GALLIAVCRGKVSEGLDF--SDDNA-----------RAVITIGIPFPNVKDLQVELKRQY 801
Query: 655 NDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHI 712
ND + + LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL+D+RF +R + +
Sbjct: 802 NDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRYISGL 861
Query: 713 SKWLRKSIKQYDSFDASLEGLKSF 736
SKW+R+ I+ + +F ++LE L F
Sbjct: 862 SKWVRQQIQHHSTFASALESLTEF 885
Score = 171 (65.3 bits), Expect = 3.4e-105, Sum P(4) = 3.4e-105
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 15 LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74
L+ Y +GG+++ FP + Y +QL M ++ L+ +Q HC LLESPTG+GKSL+LLCS
Sbjct: 5 LSEYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQ---HC--LLESPTGSGKSLALLCS 59
Query: 75 TLAWQQN 81
LAWQQ+
Sbjct: 60 ALAWQQS 66
Score = 66 (28.3 bits), Expect = 3.4e-105, Sum P(4) = 3.4e-105
Identities = 51/256 (19%), Positives = 93/256 (36%)
Query: 929 KETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEM 988
KE +N + L +G++ +++ +AS Q+P+ S+ ++ V V P+M
Sbjct: 898 KEEKCTKENGSTLDVACL--EGSTLTSVSEASHQTPEN-SLEEEA---KVCVQEQRYPQM 951
Query: 989 VVTPEKEVTGDTSNLPPERDSSLSSSVNS-HTQKRRKTMVSPSVDLMLMASREANRRIEF 1047
+ +G + + ++S S T K K+ +S S E F
Sbjct: 952 AA---ENPSGPSHGVSRRKESDPGLREKSVQTMKTEKSEISRSSSPTFGKQTEPVNWPIF 1008
Query: 1048 NSETNYVKNKSKTSN---NCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHLYVRCSVT 1104
NS + +K K +++H S++ +KT C S P N C +
Sbjct: 1009 NSLKRHFNSKVKNRTPVLKSSKNHASASSAFNKTALPLTGKCVSS-SAPANTPLAPCPQS 1067
Query: 1105 SSAKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGASGQGIWCEEDG--- 1161
+ + + C P ++S V T ++ G +S + E D
Sbjct: 1068 EVIIPSVKADTTPAKTHCKQNEKDPSPDAELSPV----TEEAKGSSSNPAVGTEVDDDSV 1123
Query: 1162 CVYNTLFCPFCSSPSN 1177
C LF P + N
Sbjct: 1124 CFTPELFDPVSTDEEN 1139
Score = 59 (25.8 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 31/133 (23%), Positives = 55/133 (41%)
Query: 699 LDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKS-FFRDVKGWVGKKMFNGLENSDN 757
LD R E+ R +RK+ + + A +GL S + K+ N ++ +
Sbjct: 181 LDARLASEK-RVKPESPIRKTSSSFQNAFAQPDGLCSRCCCSANQGINKESANTVKKDNG 239
Query: 758 DVDHVSSM---DQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNFEVQTSL 813
D + + + Q T+EL K+ +SG + +S D H + GNF
Sbjct: 240 DQSKRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNF------ 293
Query: 814 QTDQNNSCIEYID 826
++N C+E +D
Sbjct: 294 --NRNEKCMELLD 304
Score = 54 (24.1 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 851 KLNSYDNSG--QKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSS 908
+L+S NS +K H ++ + +N L E + V+ D SSCK + + L
Sbjct: 422 ELDSLINSNIRKKSHEPLRDVCYNLINWL-ETNSKNLVERDYESSCKIWSGNEMLLNLHR 480
Query: 909 RCCEASSMPFSNEDPELLLVKE 930
A+S P + +L KE
Sbjct: 481 MGITAASFPVLQKHLSAVLQKE 502
Score = 45 (20.9 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 1046 EFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCSLCRSPLGLPENHL 1097
EF+ V N+SK C + + S+ V S+ + PEN L
Sbjct: 884 EFSKRHQKVTNRSKKEEKCTKENGSTLDVACLEGSTLTSVSEASHQTPENSL 935
Score = 44 (20.5 bits), Expect = 2.4e-09, Sum P(3) = 2.4e-09
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 643 INDIQVSLKKKYNDTYRSSKNLLSGNEWYCN 673
IN ++ + K Y SS + SGNE N
Sbjct: 447 INWLETNSKNLVERDYESSCKIWSGNEMLLN 477
Score = 41 (19.5 bits), Expect = 1.0e-102, Sum P(5) = 1.0e-102
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1214 FKSEAKDSSPITHSAMDKVAAFSCIEK 1240
F S+ K+ +P+ S+ + +A S K
Sbjct: 1015 FNSKVKNRTPVLKSSKNHASASSAFNK 1041
>UNIPROTKB|E2RHN5 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:GVHKISD EMBL:AAEX03006594
EMBL:AAEX03006595 EMBL:AAEX03006596 Ensembl:ENSCAFT00000028135
Uniprot:E2RHN5
Length = 1244
Score = 504 (182.5 bits), Expect = 4.3e-105, Sum P(4) = 4.3e-105
Identities = 119/373 (31%), Positives = 198/373 (53%)
Query: 89 ANISHSKPDTEAVTDPLANGGGFIPESQP---STIPPST---NGQTAQVAMXXXXXXXXM 142
A ++ K T + PL F P++ P S ST + Q +
Sbjct: 185 AKVASGK--TTKLNSPLEKINSFSPQNPPGHCSRCCCSTKQGSNQDSSNTTKKDHGGKSK 242
Query: 143 TPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLL 201
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E+C LL
Sbjct: 243 IPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELL 302
Query: 202 GDRN-LGCPQFKNVHKVRGHPSLQ--KGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADD 258
+N C + VHK+ +LQ +G C + DIE+LV++G+ ++ C YY AR + +D
Sbjct: 303 DGKNGKSCYFYHGVHKISNQHTLQTLQGMC-KAWDIEELVSLGKKLKACPYYTARELIED 361
Query: 259 AQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
A ++FCPY+Y+++ IR +M++++K ++ILDEAHNIED AR++ S + E L + E
Sbjct: 362 AHIIFCPYNYLLDAQIRESMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDE 421
Query: 319 LEQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEAN 376
L+ + + N ++PL + L+ W+E L +R+++ W+G + + L +
Sbjct: 422 LDSMVNNNIRKKNHEPLRAVCYSLINWLEANSEHLVERDYESSCKIWSGSEMVLNLHKMG 481
Query: 377 ISRQCFPIL-------LECATKAIK-EATDTESELPHLSGMSVITLEGLFSSLTYFFSRN 428
I+ FPIL L+ K + + E+P +S + I L+GLF Y F +N
Sbjct: 482 ITTATFPILQGHFSAVLQKEEKVLPIHGKEETREVPIISASTQIMLKGLFMVFDYLFRQN 541
Query: 429 GSHVSDYQLALQK 441
DY++A+Q+
Sbjct: 542 SRFADDYKVAIQQ 554
Score = 502 (181.8 bits), Expect = 4.3e-105, Sum P(4) = 4.3e-105
Identities = 120/314 (38%), Positives = 169/314 (53%)
Query: 456 HTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ 515
H L+ WCLNPAV F D+ PM SFSSELGV F LEA HVI+ + Q
Sbjct: 587 HVLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVIN-NSQ 645
Query: 516 VLTSVISTGPDNYPLNASYKTAD----------------------------GYKLMEKLC 547
V I +GP L A+++ + YKL+EKL
Sbjct: 646 VWVGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKLK 705
Query: 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEG 606
RW TG W L K + VEP+GG + DF +L+ YY++I +G K +
Sbjct: 706 ERWLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALLVAVCRGKV 765
Query: 607 NNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLS 666
+ L+ S +NA R I +GIPFPN+ D+QV LK++YND + + LL
Sbjct: 766 SEGLDF--SDDNA-----------RAVITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLP 812
Query: 667 GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHISKWLRKSIKQYD 724
G +WY QA+RALNQA+GRCIRH+ D+GA+IL+D+RF+ +R + +SKW+R+ I+ +
Sbjct: 813 GRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQIQHHS 872
Query: 725 SFDASLEGLKSFFR 738
+F+++LE L F R
Sbjct: 873 TFESALESLSDFSR 886
Score = 186 (70.5 bits), Expect = 4.3e-105, Sum P(4) = 4.3e-105
Identities = 40/83 (48%), Positives = 56/83 (67%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCSTLA
Sbjct: 8 YTIGGVKITFPYKAYPSQLAMMNSIVRGLNSKQ---HC--LLESPTGSGKSLALLCSTLA 62
Query: 78 WQQNCKLKNQLANISHSKPDTEA 100
WQQ+ + +L + S SK + +
Sbjct: 63 WQQS--VSGKLVDESLSKTEVSS 83
Score = 57 (25.1 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 26/105 (24%), Positives = 50/105 (47%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNF---EVQTSLQTDQNN-SCIE 823
K++ Q T+EL ++ +SG + +S D H + GNF E L +N SC
Sbjct: 254 KQIA-QITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF 312
Query: 824 YIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY 868
Y + +++ N H++ + +G + + + + G+KL + Y
Sbjct: 313 YHGVHKIS--NQHTLQTLQGMCKAWD--IEELVSLGKKLKACPYY 353
Score = 46 (21.3 bits), Expect = 4.2e-10, Sum P(3) = 4.2e-10
Identities = 17/75 (22%), Positives = 31/75 (41%)
Query: 856 DNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASS 915
+N +K H ++ + +N L E + V+ D SSCK + ++ L ++
Sbjct: 428 NNIRKKNHEPLRAVCYSLINWL-EANSEHLVERDYESSCKIWSGSEMVLNLHKMGITTAT 486
Query: 916 MPFSNEDPELLLVKE 930
P +L KE
Sbjct: 487 FPILQGHFSAVLQKE 501
Score = 44 (20.5 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 18/85 (21%), Positives = 38/85 (44%)
Query: 193 IDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCH-EVHDIEDLVN-------VGQVV 244
+ ++C+ N C Q + + V+ +L K C ++ E+ V+ +G+
Sbjct: 1049 LTDKCESSSPMLNASCSQSEVISSVKIDSTLLKRNCSKQLFCCEEAVDPDIELSLLGEEA 1108
Query: 245 RGC-SYYAARSMADDAQLVFCPYSY 268
+ S+ A+ + A+D + F P Y
Sbjct: 1109 KSSTSHRASETEAEDESIYFSPELY 1133
Score = 42 (19.8 bits), Expect = 4.3e-105, Sum P(4) = 4.3e-105
Identities = 18/79 (22%), Positives = 33/79 (41%)
Query: 746 KKMFNGLENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQG 805
K++F E D D++ ++ K T E D S S YDP +
Sbjct: 1086 KQLFCCEEAVDPDIELSLLGEEAKSSTSHRASETEAEDES--IYFSPELYDP-----ADT 1138
Query: 806 NFEVQTSLQTDQNNSCIEY 824
N E +++D++N +++
Sbjct: 1139 NEEKNELVESDRDNRFVDH 1157
Score = 38 (18.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 907 SSRCCEASSMPFSNED 922
SS CC S F+N D
Sbjct: 83 SSCCCACHSKNFTNID 98
Score = 38 (18.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 191 ENIDEECKLLLGDRNLG--CP-QFKNVHKVRGHPSLQKG 226
+NID K + + LG C KN +++ PS KG
Sbjct: 1203 DNIDSNMKTHINELELGKTCETDIKNFNQL---PSKNKG 1238
Score = 38 (18.4 bits), Expect = 3.4e-08, Sum P(3) = 3.4e-08
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 769 KEVTKQNTQELNKSDHSGQN 788
K+ + Q++ K DH G++
Sbjct: 222 KQGSNQDSSNTTKKDHGGKS 241
>MGI|MGI:2442836 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
Length = 1174
Score = 510 (184.6 bits), Expect = 5.8e-105, Sum P(4) = 5.8e-105
Identities = 110/311 (35%), Positives = 177/311 (56%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEEC-KLLL 201
P I++ +RTH QI+Q+ E +KTAY VPM +L+SR H C + V N E+C +LL
Sbjct: 247 PKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHSCVHPEVVGNFNRKEKCMELLD 306
Query: 202 GDRNLGCPQFKNVHKVRGHPSLQK-GGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
G C + VHK+ +LQ G DIE+LV++G+ ++ C YY AR + +DA
Sbjct: 307 GKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSLGRKLKACPYYTARELIEDAD 366
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
+VFCPY+Y+++ IR M++ +KG ++ILDEAHNIED AR++ S + E L + EL+
Sbjct: 367 IVFCPYNYLLDSQIRETMDIKLKGQVVILDEAHNIEDCARESASYSVTEVQLRFARDELD 426
Query: 321 QVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANIS 378
+ + N ++PL ++ +L+ W+E L +R ++ W+G++ L L I+
Sbjct: 427 SLINGNIRKKSHEPLRDVCYNLINWLETNSKHLVERGYESSCKIWSGNEMLLNLYRMGIT 486
Query: 379 RQCFPILLECATKAI-KEATDT------ES-ELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
FP+L + + KE T E+ ++P +S + + L+GLF L Y F N
Sbjct: 487 TATFPVLQRHLSAVLQKEEKVTPIHGKEEAIQIPIISASTQVVLKGLFMVLDYLFRENSR 546
Query: 431 HVSDYQLALQK 441
DY++A+Q+
Sbjct: 547 FADDYKVAIQQ 557
Score = 505 (182.8 bits), Expect = 5.8e-105, Sum P(4) = 5.8e-105
Identities = 126/333 (37%), Positives = 176/333 (52%)
Query: 437 LALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL 496
LA+ K K + G N L+ WCLNPAV F D+ + P+ SFSSEL
Sbjct: 574 LAVPKNKKHSRQKIGVN---ALNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSEL 630
Query: 497 GVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD------------------ 538
GV F LEA HVI + QV + +GP L A+++ +
Sbjct: 631 GVTFSIQLEANHVIS-NSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQT 689
Query: 539 ----------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI 588
YKL+EKL RW TG W L + K + EP+GG + DF+ +L+ YY++I
Sbjct: 690 VSQGILCFLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAI 749
Query: 589 S-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQ 647
+G K + + L+ S +NA R I VGIPFPN+ D+Q
Sbjct: 750 KFKGEKDGALLIAVCRGKVSEGLDF--SDDNA-----------RAVITVGIPFPNVKDLQ 796
Query: 648 VSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEER 707
V LK++YND + S+ LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL+D+RF
Sbjct: 797 VELKRQYNDHHSKSRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNP 856
Query: 708 NR--AHISKWLRKSIKQYDSFDASLEGLKSFFR 738
NR + +SKW+R+ I+ + SF ++LE L F R
Sbjct: 857 NRYISGLSKWVRQQIQHHSSFASALESLTEFSR 889
Score = 171 (65.3 bits), Expect = 5.8e-105, Sum P(4) = 5.8e-105
Identities = 35/71 (49%), Positives = 49/71 (69%)
Query: 15 LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74
L+ Y +GG+++ FP + Y +QL M ++ L+ +Q HC LLESPTG+GKSL+LLCS
Sbjct: 5 LSDYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQ---HC--LLESPTGSGKSLALLCS 59
Query: 75 TLAWQQNCKLK 85
LAWQQ+ K
Sbjct: 60 ALAWQQSLSEK 70
Score = 56 (24.8 bits), Expect = 2.6e-07, Sum P(4) = 2.6e-07
Identities = 39/184 (21%), Positives = 73/184 (39%)
Query: 706 ERNRAHISKWL--RKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVS 763
E++ H+ L K +K S K F++V G + + + ++ + +
Sbjct: 177 EKDVHHVDARLASEKRVKPESPIGKSFSDRKDSFQNVDGLCSRCCCSAKQGNNQEPANTV 236
Query: 764 SMD---QCKEV-----TK------QNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNFE 808
D QCK T+ Q T+EL K+ +SG + +S D H + GNF
Sbjct: 237 KKDHGGQCKRPKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHSCVHPEVVGNFN 296
Query: 809 VQTS----LQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHS 864
+ L SC Y + +++ N ++ +G +R + + + G+KL +
Sbjct: 297 RKEKCMELLDGKHGKSCYFYHGVHKIS--NQQTLQHLQGMSRAWD--IEELVSLGRKLKA 352
Query: 865 SVKY 868
Y
Sbjct: 353 CPYY 356
Score = 44 (20.5 bits), Expect = 5.8e-105, Sum P(4) = 5.8e-105
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 969 VHSQSLTNPVRV---PSSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSS 1014
+ S+ + +PV++ P++ + V EK++ DT P ++ SS
Sbjct: 1066 LQSEVIISPVKIEATPATNYSKQVFCCEKDLLPDTELSPGTEEAKCPSS 1114
Score = 43 (20.2 bits), Expect = 1.3e-06, Sum P(4) = 1.3e-06
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 363 WTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSL 421
W +LR + + + C P+L +A +T ++ LP L+G V + E +SL
Sbjct: 1006 WPIFNSLRRHFNSKV-KNCTPVLKSSKNRAPGSSTFNKTALP-LTGNCVPSNETADTSL 1062
Score = 42 (19.8 bits), Expect = 7.2e-06, Sum P(5) = 7.2e-06
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 643 INDIQVSLKKKYNDTYRSSKNLLSGNEWYCN 673
IN ++ + K Y SS + SGNE N
Sbjct: 449 INWLETNSKHLVERGYESSCKIWSGNEMLLN 479
Score = 41 (19.5 bits), Expect = 6.2e-104, Sum P(5) = 6.2e-104
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 1046 EFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISC 1083
EF+ V N+SK C + + + TL+++C
Sbjct: 886 EFSRRHQKVTNRSKKDEKCTKDN-------EPTLEVAC 916
Score = 40 (19.1 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 1182 QIVASNALNFQLLNKILFYLD 1202
Q + NALNF LN + + D
Sbjct: 585 QKIGVNALNFWCLNPAVAFSD 605
Score = 40 (19.1 bits), Expect = 5.3e-55, Sum P(5) = 5.3e-55
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 124 TNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQIS-QVISEYKK 165
T+ Q AQ+ P +SR HS + +V+ + +
Sbjct: 255 THKQIAQITRELRKTAYSGVPMTILSSRDHSCVHPEVVGNFNR 297
Score = 37 (18.1 bits), Expect = 6.2e-104, Sum P(5) = 6.2e-104
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1214 FKSEAKDSSPITHSAMDKVAAFSCIEK 1240
F S+ K+ +P+ S+ ++ S K
Sbjct: 1016 FNSKVKNCTPVLKSSKNRAPGSSTFNK 1042
>UNIPROTKB|Q9BX63 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0000077 "DNA damage checkpoint"
evidence=NAS] [GO:0006302 "double-strand break repair"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0000077 GO:GO:0046872 GO:GO:0003677 GO:GO:0031965
GO:GO:0006357 GO:GO:0051539 GO:GO:0004003 GO:GO:0006302 MIM:114480
InterPro:IPR014001 SMART:SM00487 CleanEx:HS_BACH1 Orphanet:145
PDB:1T29 PDBsum:1T29 MIM:227650 Orphanet:84 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AF360549
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 EMBL:BC101472
EMBL:BC101474 EMBL:AK074713 IPI:IPI00012500 IPI:IPI00514398
RefSeq:NP_114432.2 UniGene:Hs.128903 PDB:3AL3 PDBsum:3AL3
ProteinModelPortal:Q9BX63 SMR:Q9BX63 DIP:DIP-41787N IntAct:Q9BX63
MINT:MINT-275883 STRING:Q9BX63 PhosphoSite:Q9BX63 DMDM:57012613
PaxDb:Q9BX63 PRIDE:Q9BX63 DNASU:83990 Ensembl:ENST00000259008
GeneID:83990 KEGG:hsa:83990 UCSC:uc002izk.2 GeneCards:GC17M059759
H-InvDB:HIX0202529 HGNC:HGNC:20473 HPA:HPA005474 MIM:605882
MIM:609054 neXtProt:NX_Q9BX63 PharmGKB:PA134906421
InParanoid:Q9BX63 EvolutionaryTrace:Q9BX63 GenomeRNAi:83990
NextBio:73148 ArrayExpress:Q9BX63 Bgee:Q9BX63 CleanEx:HS_BRIP1
Genevestigator:Q9BX63 GermOnline:ENSG00000136492 Uniprot:Q9BX63
Length = 1249
Score = 506 (183.2 bits), Expect = 6.1e-104, Sum P(4) = 6.1e-104
Identities = 123/379 (32%), Positives = 201/379 (53%)
Query: 83 KLKNQLANISHSKPDTEAVTDPLANGGGFIPESQP---STIPPST---NGQTAQVAMXXX 136
++ N A + K T + PL F P+ P S ST N Q + +
Sbjct: 179 EVHNLDAKVDSGK--TVKLNSPLEKINSFSPQKPPGHCSRCCCSTKQGNSQESSNTIKKD 236
Query: 137 XXXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDE 195
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E
Sbjct: 237 HTGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNE 296
Query: 196 ECKLLLGDRN-LGCPQFKNVHKVRGHPSLQ--KGGCHEVHDIEDLVNVGQVVRGCSYYAA 252
+C LL +N C + VHK+ +LQ +G C + DIE+LV++G+ ++ C YY A
Sbjct: 297 KCMELLDGKNGKSCYFYHGVHKISDQHTLQTFQGMC-KAWDIEELVSLGKKLKACPYYTA 355
Query: 253 RSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVL 312
R + DA ++FCPY+Y+++ IR +M++++K ++ILDEAHNIED AR++ S + E L
Sbjct: 356 RELIQDADIIFCPYNYLLDAQIRESMDLNLKEQVVILDEAHNIEDCARESASYSVTEVQL 415
Query: 313 LKLQMELEQVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALR 370
+ EL+ + + N ++PL + L+ W+E L +R+++ W+G++ L
Sbjct: 416 RFARDELDSMVNNNIRKKDHEPLRAVCCSLINWLEANAEYLVERDYESACKIWSGNEMLL 475
Query: 371 ELQEANISRQCFPILLECATKAI-KE-------ATDTESELPHLSGMSVITLEGLFSSLT 422
L + I+ FPIL + + KE + E+P +S + I L+GLF L
Sbjct: 476 TLHKMGITTATFPILQGHFSAVLQKEEKISPIYGKEEAREVPVISASTQIMLKGLFMVLD 535
Query: 423 YFFSRNGSHVSDYQLALQK 441
Y F +N DY++A+Q+
Sbjct: 536 YLFRQNSRFADDYKIAIQQ 554
Score = 505 (182.8 bits), Expect = 6.1e-104, Sum P(4) = 6.1e-104
Identities = 133/379 (35%), Positives = 197/379 (51%)
Query: 422 TYFFSRNGSHVSDYQ--LALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXX 479
TY ++ N +SD L L K KR + H L+ WCLNPAV F D+
Sbjct: 555 TYSWT-NQIDISDKNGLLVLPKNKKRSRQKTA---VHVLNFWCLNPAVAFSDINGKVQTI 610
Query: 480 XXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD- 538
PM SFSSELGV F LEA H+I + QV I +GP L A+++ +
Sbjct: 611 VLTSGTLSPMKSFSSELGVTFTIQLEANHIIK-NSQVWVGTIGSGPKGRNLCATFQNTET 669
Query: 539 ---------------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKG 571
YKL+EKL RW TG W L K + VEP+G
Sbjct: 670 FEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQG 729
Query: 572 GSQEDFEIVLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC 630
G + +F+ +L+ YY++I +G K + + L+ S +NA
Sbjct: 730 GEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDF--SDDNA----------- 776
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R I +GIPFPN+ D+QV LK++YND + + LL G +WY QA+RALNQA+GRCIRHR
Sbjct: 777 RAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHR 836
Query: 691 FDYGAIILLDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKM 748
D+GA+IL+D+RF+ +R + +SKW+R+ I+ + +F+++LE L F + +K+
Sbjct: 837 NDWGALILVDDRFRNNPSRYISGLSKWVRQQIQHHSTFESALESLAEFSKK-----HQKV 891
Query: 749 FN-GLENSDNDVDHVSSMD 766
N +++ N D+ S+++
Sbjct: 892 LNVSIKDRTNIQDNESTLE 910
Score = 174 (66.3 bits), Expect = 6.1e-104, Sum P(4) = 6.1e-104
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS LA
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQ---HC--LLESPTGSGKSLALLCSALA 62
Query: 78 WQQN 81
WQQ+
Sbjct: 63 WQQS 66
Score = 58 (25.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 26/105 (24%), Positives = 51/105 (48%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNF---EVQTSLQTDQNN-SCIE 823
K++ Q T+EL ++ +SG + +S D H + GNF E L +N SC
Sbjct: 254 KQIA-QITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKNGKSCYF 312
Query: 824 YIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY 868
Y + +++D+ H++ + +G + + + + G+KL + Y
Sbjct: 313 YHGVHKISDQ--HTLQTFQGMCKAWD--IEELVSLGKKLKACPYY 353
Score = 46 (21.3 bits), Expect = 5.6e-08, Sum P(2) = 5.6e-08
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 151 RTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENI---DEECKLLLGDRNLG 207
RT+ Q ++ E Y P +L + H +V D+ I + +C ++ +N
Sbjct: 899 RTNIQDNESTLEVTSLKYSTPPYLLEAASHLSPENFVEDEAKICVQELQCPKII-TKNSP 957
Query: 208 CPQFKNVHKVRGHPS-LQKGG 227
P K + P L++ G
Sbjct: 958 LPSSIISRKEKNDPVFLEEAG 978
Score = 44 (20.5 bits), Expect = 9.0e-08, Sum P(2) = 9.0e-08
Identities = 31/104 (29%), Positives = 47/104 (45%)
Query: 695 AIILLDER--FQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGK--KMFN 750
A I DE FQ E+ R + ++ I++ F + L D K GK K+ +
Sbjct: 144 ASIYRDENDDFQVEKKRIRPLETTQQ-IRKRHCFGTEVHNL-----DAKVDSGKTVKLNS 197
Query: 751 GLE--NSDNDVDHVSSMDQCKEVTKQ-NTQELN---KSDHSGQN 788
LE NS + +C TKQ N+QE + K DH+G++
Sbjct: 198 PLEKINSFSPQKPPGHCSRCCCSTKQGNSQESSNTIKKDHTGKS 241
Score = 43 (20.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 28/133 (21%), Positives = 51/133 (38%)
Query: 898 INTQCSLQKSSRCCEASSMPFSNEDPELLLVKE-----TPAMDDNNTMASPGSLSKDGNS 952
++ + +Q S CC S F+N D + TP + N T S +D
Sbjct: 76 VSEKAEVQLSC-CCACHSKDFTNNDMNQGTSRHFNYPSTPPSERNGT----SSTCQDSPE 130
Query: 953 SSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPE---KEVTG-DTSNLPPERD 1008
+T+ A + Q S++ + +V + T + + G + NL + D
Sbjct: 131 KTTL-AAKLSAKKQASIYRDE-NDDFQVEKKRIRPLETTQQIRKRHCFGTEVHNLDAKVD 188
Query: 1009 SSLSSSVNSHTQK 1021
S + +NS +K
Sbjct: 189 SGKTVKLNSPLEK 201
Score = 38 (18.4 bits), Expect = 6.1e-104, Sum P(4) = 6.1e-104
Identities = 21/95 (22%), Positives = 45/95 (47%)
Query: 763 SSMDQCKEVTKQNTQELNKSDHSGQNVQ-SISKYDPFSHQKSQGNF--EVQTSLQT---- 815
S+++ E +K++ + LN S N+Q + S + S + S + E + L
Sbjct: 876 SALESLAEFSKKHQKVLNVSIKDRTNIQDNESTLEVTSLKYSTPPYLLEAASHLSPENFV 935
Query: 816 -DQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKEN 849
D+ C++ + ++ KN+ + SS S +++N
Sbjct: 936 EDEAKICVQELQCPKIITKNS-PLPSSIISRKEKN 969
>UNIPROTKB|E1BNG9 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000048969 Uniprot:E1BNG9
Length = 1098
Score = 500 (181.1 bits), Expect = 2.5e-90, Sum P(2) = 2.5e-90
Identities = 107/311 (34%), Positives = 175/311 (56%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E+C LL
Sbjct: 180 PKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEVMGNFNRNEKCMELLD 239
Query: 203 DRN-LGCPQFKNVHKVRGHPSLQK-GGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+N C + VHK+ +LQ G H+ DIE+LV++G+ ++ C YY AR + +A
Sbjct: 240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
++FCPY+Y+++ IR M++++K ++ILDEAHNIED AR++ S + E L + EL+
Sbjct: 300 IIFCPYNYLLDAQIRETMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELD 359
Query: 321 QVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANIS 378
+ + N ++PL + L+ W+E L +R ++ W+G + L L + I+
Sbjct: 360 SMINYNIRKKDHEPLRAVCCSLINWLEASSEHLVERNYESSCKVWSGSEMLLNLHKMGIT 419
Query: 379 RQCFPILLECATKAIKEATDTES--------ELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
FPIL + ++ S E+P +S + I L+GLF L Y F +N
Sbjct: 420 TATFPILQGHFSAVLQREEKVPSIHGKEEAREIPVISASTQIMLKGLFMVLDYLFRQNSR 479
Query: 431 HVSDYQLALQK 441
DY++A+Q+
Sbjct: 480 FADDYKVAIQQ 490
Score = 493 (178.6 bits), Expect = 2.5e-90, Sum P(2) = 2.5e-90
Identities = 122/340 (35%), Positives = 178/340 (52%)
Query: 428 NGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXX 487
N S +D+ L + K+ + L+ WCLNPAV F D+
Sbjct: 496 NQSDTTDHGLLILSKNKKRLRQKAA--VRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLS 553
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD--------- 538
PM SFSSELGV F LEA HVI+ + QV I +GP L A+++ +
Sbjct: 554 PMKSFSSELGVTFTIQLEANHVIN-NSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVG 612
Query: 539 -------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEI 579
YKL+EKL RW TG W L K + VEP+GG + DF+
Sbjct: 613 ALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDE 672
Query: 580 VLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGI 638
+L+ YY++I +G K + + L+ S +NA R + +GI
Sbjct: 673 LLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDF--SDDNA-----------RAVVTIGI 719
Query: 639 PFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIIL 698
PFPN+ D+QV LK++YND + + LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL
Sbjct: 720 PFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALIL 779
Query: 699 LDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSF 736
+D+RF+ +R + +SKW+R+ I+ + +F+++LE L F
Sbjct: 780 VDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEF 819
Score = 38 (18.4 bits), Expect = 1.2e-41, Sum P(2) = 1.2e-41
Identities = 23/101 (22%), Positives = 36/101 (35%)
Query: 115 SQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRV-PMA 173
S PST PPS T + + + A + S +++ R+ P+
Sbjct: 40 SSPST-PPSERNGTLSGSQEDSPEKTTLAAKLS-AKKQASMYRDENDDFQVEKKRIRPLE 97
Query: 174 VLAS-RKHYCTNKYVR--DKENIDEECKLL---LGDRNLGC 208
RK +C K V D + E+ L LG + C
Sbjct: 98 TAQQIRKRHCFEKEVHHLDAKVASEKTTKLNSPLGKKTYSC 138
>UNIPROTKB|F1MMS0 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
OMA:GVHKISD EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000061499 Uniprot:F1MMS0
Length = 1164
Score = 500 (181.1 bits), Expect = 4.0e-89, Sum P(3) = 4.0e-89
Identities = 107/311 (34%), Positives = 175/311 (56%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E+C LL
Sbjct: 180 PKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEVMGNFNRNEKCMELLD 239
Query: 203 DRN-LGCPQFKNVHKVRGHPSLQK-GGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+N C + VHK+ +LQ G H+ DIE+LV++G+ ++ C YY AR + +A
Sbjct: 240 GKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSLGRKLKACPYYTARELMQNAD 299
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
++FCPY+Y+++ IR M++++K ++ILDEAHNIED AR++ S + E L + EL+
Sbjct: 300 IIFCPYNYLLDAQIRETMDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELD 359
Query: 321 QVCSVN--PMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANIS 378
+ + N ++PL + L+ W+E L +R ++ W+G + L L + I+
Sbjct: 360 SMINYNIRKKDHEPLRAVCCSLINWLEASSEHLVERNYESSCKVWSGSEMLLNLHKMGIT 419
Query: 379 RQCFPILLECATKAIKEATDTES--------ELPHLSGMSVITLEGLFSSLTYFFSRNGS 430
FPIL + ++ S E+P +S + I L+GLF L Y F +N
Sbjct: 420 TATFPILQGHFSAVLQREEKVPSIHGKEEAREIPVISASTQIMLKGLFMVLDYLFRQNSR 479
Query: 431 HVSDYQLALQK 441
DY++A+Q+
Sbjct: 480 FADDYKVAIQQ 490
Score = 493 (178.6 bits), Expect = 4.0e-89, Sum P(3) = 4.0e-89
Identities = 122/340 (35%), Positives = 178/340 (52%)
Query: 428 NGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXX 487
N S +D+ L + K+ + L+ WCLNPAV F D+
Sbjct: 496 NQSDTTDHGLLILSKNKKRLRQKAA--VRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLS 553
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD--------- 538
PM SFSSELGV F LEA HVI+ + QV I +GP L A+++ +
Sbjct: 554 PMKSFSSELGVTFTIQLEANHVIN-NSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVG 612
Query: 539 -------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEI 579
YKL+EKL RW TG W L K + VEP+GG + DF+
Sbjct: 613 ALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDE 672
Query: 580 VLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGI 638
+L+ YY++I +G K + + L+ S +NA R + +GI
Sbjct: 673 LLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDF--SDDNA-----------RAVVTIGI 719
Query: 639 PFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIIL 698
PFPN+ D+QV LK++YND + + LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL
Sbjct: 720 PFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALIL 779
Query: 699 LDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSF 736
+D+RF+ +R + +SKW+R+ I+ + +F+++LE L F
Sbjct: 780 VDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEF 819
Score = 41 (19.5 bits), Expect = 4.9e-41, Sum P(3) = 4.9e-41
Identities = 34/154 (22%), Positives = 55/154 (35%)
Query: 115 SQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRV-PMA 173
S PST PPS T + + + A + S +++ R+ P+
Sbjct: 44 SSPST-PPSERNGTLSGSQEDSPEKTTLAAKLS-AKKQASMYRDENDDFQVEKKRIRPLE 101
Query: 174 VLAS-RKHYCTNKYVR--DKENIDEECKLL---LGDRNLGCPQFKNVHKVRGHPSLQKGG 227
RK +C K V D + E+ L LG N PQ H R S ++G
Sbjct: 102 TAQQIRKRHCFEKEVHHLDAKVASEKTTKLNSPLGKINSISPQNPPGHCSRCCCSTKQGN 161
Query: 228 CHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQL 261
+ + + G+ Y+ R+ AQ+
Sbjct: 162 SEDSSNTTKKDHGGKFKIPKIYFGTRTHKQIAQI 195
Score = 40 (19.1 bits), Expect = 4.0e-89, Sum P(3) = 4.0e-89
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 1209 PESGKFKSEAKDSSPITHSAMDKVAAFSCIEKFSYSP 1245
P S K + E KD + + V A + S SP
Sbjct: 888 PSSPKRRKEQKDDPELLEESAQAVGAEGIVISRSTSP 924
>RGD|1307659 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
[GO:0071295 "cellular response to vitamin" evidence=IEP]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
GO:GO:0071295 Uniprot:D4AD12
Length = 818
Score = 484 (175.4 bits), Expect = 2.8e-85, Sum P(4) = 2.8e-85
Identities = 118/324 (36%), Positives = 172/324 (53%)
Query: 444 KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTC 503
K+ S+ G + L+ WCLNPAV F D+ + P+ SFSSELGV F
Sbjct: 500 KKHSRQKIG--VNVLNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQ 557
Query: 504 LEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD------------------------- 538
LEA HVI + QV + +GP L A+++ +
Sbjct: 558 LEANHVIS-NSQVWVGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILC 616
Query: 539 ---GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSIS-QGSKC 594
YKL+EKL RW TG W L + K + EP+GG + DF+ +L+ YY++I +G K
Sbjct: 617 FLPSYKLLEKLRERWIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKD 676
Query: 595 AXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY 654
+ + L+ S +NA R I +GIPFPN+ D+QV LK++Y
Sbjct: 677 GALLIAVCRGKVSEGLDF--SDDNA-----------RAVITIGIPFPNVKDLQVELKRQY 723
Query: 655 NDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR--AHI 712
ND + + LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL+D+RF +R + +
Sbjct: 724 NDHHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFNNNPDRYISGL 783
Query: 713 SKWLRKSIKQYDSFDASLEGLKSF 736
SKW+R+ I+ + +F ++LE L F
Sbjct: 784 SKWVRQQIQHHSTFASALESLTEF 807
Score = 234 (87.4 bits), Expect = 2.8e-85, Sum P(4) = 2.8e-85
Identities = 52/174 (29%), Positives = 93/174 (53%)
Query: 278 MEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVN--PMIYQPLIE 335
M++ +K ++ILDEAHNIE+ AR+ S + E L + EL+ + + N ++PL +
Sbjct: 304 MDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDELDSLINSNIRKKSHEPLRD 363
Query: 336 MTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPIL---LECATKA 392
+ +L+ W+E L +R+++ W+G++ L L I+ FP+L L +
Sbjct: 364 VCYNLINWLETNSKNLVERDYESSCKIWSGNEMLLNLHRMGITAASFPVLQKHLSAVLQK 423
Query: 393 IKEATDTES-----ELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQK 441
++ T T ++P +S + I L+GLF L Y F +N DY++A+Q+
Sbjct: 424 EEKVTSTHGKEEAIQIPIISASTQIMLKGLFMVLDYLFRKNSRFADDYKVAIQQ 477
Score = 171 (65.3 bits), Expect = 2.8e-85, Sum P(4) = 2.8e-85
Identities = 34/67 (50%), Positives = 48/67 (71%)
Query: 15 LNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74
L+ Y +GG+++ FP + Y +QL M ++ L+ +Q HC LLESPTG+GKSL+LLCS
Sbjct: 5 LSEYTIGGVKIHFPCRAYPAQLAMMNSIVRGLNSSQ---HC--LLESPTGSGKSLALLCS 59
Query: 75 TLAWQQN 81
LAWQQ+
Sbjct: 60 ALAWQQS 66
Score = 136 (52.9 bits), Expect = 2.8e-85, Sum P(4) = 2.8e-85
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
P I++ +RTH QI+Q+ E +KTAY VPM +L+SR H C + V N +E+C LL
Sbjct: 241 PKIYFGTRTHKQIAQITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLD 300
Query: 203 DRNL 206
+++
Sbjct: 301 GKHM 304
Score = 63 (27.2 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 43/177 (24%), Positives = 72/177 (40%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNFEVQTSLQT--DQNNSCIEYI 825
K++ Q T+EL K+ +SG + +S D H + GNF D + I+
Sbjct: 251 KQIA-QITRELRKTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKCMELLDGKHMDIKLK 309
Query: 826 DLERMNDKNNHSIDSSKGST----------RKENKKLNSYDNSG--QKLHSSVKYDSFPG 873
+ + D+ H+I+ T R +L+S NS +K H ++ +
Sbjct: 310 EQVVILDEA-HNIEECARETASYSVTEVQLRFARDELDSLINSNIRKKSHEPLRDVCYNL 368
Query: 874 LNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKE 930
+N L E + V+ D SSCK + + L A+S P + +L KE
Sbjct: 369 INWL-ETNSKNLVERDYESSCKIWSGNEMLLNLHRMGITAASFPVLQKHLSAVLQKE 424
Score = 44 (20.5 bits), Expect = 4.9e-17, Sum P(3) = 4.9e-17
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 643 INDIQVSLKKKYNDTYRSSKNLLSGNEWYCN 673
IN ++ + K Y SS + SGNE N
Sbjct: 369 INWLETNSKNLVERDYESSCKIWSGNEMLLN 399
Score = 42 (19.8 bits), Expect = 3.0e-65, Sum P(4) = 3.0e-65
Identities = 6/19 (31%), Positives = 13/19 (68%)
Query: 272 PVIRGAMEVDIKGAILILD 290
P+I + ++ +KG ++LD
Sbjct: 440 PIISASTQIMLKGLFMVLD 458
Score = 37 (18.1 bits), Expect = 6.5e-09, Sum P(3) = 6.5e-09
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 508 HVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNR 549
H ++ D+ L + +++ P + KT+ ++ + LC+R
Sbjct: 172 HCLEKDVHHLDARLASEKRVKPESPIRKTSSSFQNPDGLCSR 213
>DICTYBASE|DDB_G0286621 [details] [associations]
symbol:fncJ "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 dictyBase:DDB_G0286621 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677
EMBL:AAFI02000089 GO:GO:0004003 GO:GO:0006302 InterPro:IPR014001
SMART:SM00487 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K15362
RefSeq:XP_637574.1 ProteinModelPortal:Q54LI7
EnsemblProtists:DDB0232367 GeneID:8625714 KEGG:ddi:DDB_G0286621
InParanoid:Q54LI7 Uniprot:Q54LI7
Length = 1078
Score = 395 (144.1 bits), Expect = 6.0e-80, Sum P(4) = 6.0e-80
Identities = 96/253 (37%), Positives = 135/253 (53%)
Query: 143 TPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
+PTIF+ SRTHSQI Q+ E KKT YR M VLASR YC N ++D E+CK LL
Sbjct: 426 SPTIFFCSRTHSQIKQLTGELKKTPYRPNMVVLASRDQYCINPLLKDVPKKLEKCKKLLL 485
Query: 203 DRNLGCPQFKNVHKVRGHPSLQK------GGCHEVHDIEDLVNVGQVVRGCSYYAARSMA 256
D GC +FK K SL K GG EV DIEDL+ GQ C Y+A+R M
Sbjct: 486 DH--GC-RFK---KTEQQTSLAKSSDFLGGGKKEVWDIEDLMEAGQAHSECPYFASRDMI 539
Query: 257 DDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQ 316
+ A L+FCPY+Y+I+P IR + + G+I+I DEAHNIED + S D + L +
Sbjct: 540 EKADLIFCPYNYLIDPQIRKSFADKVAGSIVIFDEAHNIEDALMETSSFDSSLEELNEHC 599
Query: 317 MELEQVCSVNPMIYQPL-----------IEMTQDLVGWIERRKATLAKREFQHFFSCWTG 365
+ + C +N L ++ + ++ WI ++ TL +F+ + W G
Sbjct: 600 YQNFKDCIMNSRTMSMLSNEKALAIHYCYKLLESIIAWINKKVQTLKPIDFEKHQNVWKG 659
Query: 366 DKALRELQEANIS 378
+K L +E ++
Sbjct: 660 EKILNIFEEFGLN 672
Score = 294 (108.6 bits), Expect = 6.0e-80, Sum P(4) = 6.0e-80
Identities = 65/139 (46%), Positives = 89/139 (64%)
Query: 614 ESQENANKKGASFLAVCRGK---------------IVVGIPFPNINDIQVSLKKKYNDTY 658
E ++ NK GA AVCRGK IVVGIP+P++ D+++ LKK++NDT
Sbjct: 938 EIKQRPNK-GAILFAVCRGKVSEGIDFSDEYARGVIVVGIPYPSLVDLRIVLKKEHNDT- 995
Query: 659 RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRK 718
+K +SG +WY QA+RALNQA+GRCIRH+ DYG+I+L+DERF + N +SKW R
Sbjct: 996 --NKKGISGGDWYKLQAYRALNQALGRCIRHKNDYGSILLIDERFTQMGNWNSLSKWTRS 1053
Query: 719 SIKQYDSFDASLEGLKSFF 737
IK + + SL LK F+
Sbjct: 1054 CIKNNRNLNTSLSSLKLFY 1072
Score = 182 (69.1 bits), Expect = 6.0e-80, Sum P(4) = 6.0e-80
Identities = 36/70 (51%), Positives = 49/70 (70%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +G +V+FP++PY Q M R++ LD + +C +LESPTGTGK+LSLLCS+LA
Sbjct: 191 YKIGNYKVKFPFKPYACQASMMSRILEGLDSKE---NC--ILESPTGTGKTLSLLCSSLA 245
Query: 78 WQQNCKLKNQ 87
WQ+ K KNQ
Sbjct: 246 WQEENKKKNQ 255
Score = 152 (58.6 bits), Expect = 1.5e-65, Sum P(5) = 1.5e-65
Identities = 42/118 (35%), Positives = 61/118 (51%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y +EKL +RW ETG ++NAKK F EPK +Q +F L +Y I Q
Sbjct: 893 YGFLEKLLSRWDETGILKKINAKKRYFYEPK--NQREFIETLDNYREEIKQRPNKGAILF 950
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDT 657
+ + ++ S E A RG IVVGIP+P++ D+++ LKK++NDT
Sbjct: 951 AVCRGKVSEGIDF--SDEYA-----------RGVIVVGIPYPSLVDLRIVLKKEHNDT 995
Score = 126 (49.4 bits), Expect = 6.0e-80, Sum P(4) = 6.0e-80
Identities = 31/142 (21%), Positives = 58/142 (40%)
Query: 410 SVITLEGLFSSLTYFFSRNGSHVSDYQLALQK---YIKRDSK--NPGGNWTHTLSLWCLN 464
+++ LE F +T +N + DY+L LQK + K N G W + +W ++
Sbjct: 731 ALVLLES-FEKVTAMIYQNKGWIEDYRLVLQKASAFQTNGGKKSNQGTKWNYQFGIWAMS 789
Query: 465 PAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTG 524
P + F + + P+ SF EL +F E ++ D+ + +S G
Sbjct: 790 PRIAFSSLVQATRSVVLTSGTLSPLYSFPMELAAKFPISAEMGNLPDIAQRAWIGTLSHG 849
Query: 525 PDNYPLNASYKTADGYKLMEKL 546
L ++ ++G + L
Sbjct: 850 VKGTKLICTHGPSEGLDFQDSL 871
Score = 57 (25.1 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 30/148 (20%), Positives = 63/148 (42%)
Query: 937 NNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTN---PVRVPSS-AQPEMVVTP 992
+NT ++ S++ S+ST ST Q + + + TN P++ ++ M TP
Sbjct: 289 SNTTSNLPSITSTSTSNSTSTSTSTSPIKQEATATTATTNSISPIKQETTKTTTTMTTTP 348
Query: 993 EKE-VTGDTSNLPPER-DSSLS-----SSVNSHTQKRRKTMVS--PSVDLMLMASR-EAN 1042
+ + NL + + L + V K+ +++ P M + + N
Sbjct: 349 STSPIKSEELNLDSYKYEKGLQCDYNGTGVGKFEPKKIPKIINKKPKYGSMTTTTTIQNN 408
Query: 1043 RRIEFNSE--TNYVKNKSKTSNNCAESH 1068
I+++++ ++K KS T C+ +H
Sbjct: 409 ELIDYDNDGTQKFIKKKSPTIFFCSRTH 436
Score = 50 (22.7 bits), Expect = 3.8e-35, Sum P(3) = 3.8e-35
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 518 TSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKK-PLFV--EPKGGS 573
T+ ++T P P+ + D YK + L + TG + KK P + +PK GS
Sbjct: 341 TTTMTTTPSTSPIKSEELNLDSYKYEKGLQCDYNGTGV-GKFEPKKIPKIINKKPKYGS 398
Score = 49 (22.3 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 22/90 (24%), Positives = 40/90 (44%)
Query: 777 QELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERM----ND 832
QE K+ + S S S + + +++ + LQ D N + + + +++ N
Sbjct: 335 QETTKTTTTMTTTPSTSPIK--SEELNLDSYKYEKGLQCDYNGTGVGKFEPKKIPKIINK 392
Query: 833 KNNHSIDSSKGSTRKENKKLNSYDNSG-QK 861
K + S +T +N +L YDN G QK
Sbjct: 393 KPKYG--SMTTTTTIQNNELIDYDNDGTQK 420
Score = 48 (22.0 bits), Expect = 1.5e-65, Sum P(5) = 1.5e-65
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 825 IDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY-DSFPGLNLLDE--VE 881
+DL R+ K H+ + KG + + KL +Y Q L +++ + + + L+DE +
Sbjct: 982 VDL-RIVLKKEHNDTNKKGISGGDWYKLQAYRALNQALGRCIRHKNDYGSILLIDERFTQ 1040
Query: 882 VQEFVQLDR-VSSC-KDYINTQCSL 904
+ + L + SC K+ N SL
Sbjct: 1041 MGNWNSLSKWTRSCIKNNRNLNTSL 1065
Score = 39 (18.8 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 833 KNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVK 867
+NN ID T+K KK + + HS +K
Sbjct: 406 QNNELIDYDNDGTQKFIKKKSPTIFFCSRTHSQIK 440
>UNIPROTKB|G3N0I3 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
Length = 756
Score = 493 (178.6 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 122/340 (35%), Positives = 178/340 (52%)
Query: 428 NGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXX 487
N S +D+ L + K+ + L+ WCLNPAV F D+
Sbjct: 422 NQSDTTDHGLLILSKNKKRLRQKAA--VRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLS 479
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTAD--------- 538
PM SFSSELGV F LEA HVI+ + QV I +GP L A+++ +
Sbjct: 480 PMKSFSSELGVTFTIQLEANHVIN-NSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVG 538
Query: 539 -------------------GYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEI 579
YKL+EKL RW TG W L K + VEP+GG + DF+
Sbjct: 539 ALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDE 598
Query: 580 VLKHYYNSIS-QGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGI 638
+L+ YY++I +G K + + L+ S +NA R + +GI
Sbjct: 599 LLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDF--SDDNA-----------RAVVTIGI 645
Query: 639 PFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIIL 698
PFPN+ D+QV LK++YND + + LL G +WY QA+RALNQA+GRCIRH+ D+GA+IL
Sbjct: 646 PFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALIL 705
Query: 699 LDERFQEERNR--AHISKWLRKSIKQYDSFDASLEGLKSF 736
+D+RF+ +R + +SKW+R+ I+ + +F+++LE L F
Sbjct: 706 VDDRFRSNPSRYISGLSKWVRQLIQHHSTFESALESLAEF 745
Score = 222 (83.2 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 53/174 (30%), Positives = 90/174 (51%)
Query: 278 MEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVN--PMIYQPLIE 335
M++++K ++ILDEAHNIED AR++ S + E L + EL+ + + N ++PL
Sbjct: 243 MDINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMINYNIRKKDHEPLRA 302
Query: 336 MTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKE 395
+ L+ W+E L +R ++ W+G + L L + I+ FPIL + ++
Sbjct: 303 VCCSLINWLEASSEHLVERNYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQR 362
Query: 396 ATDTES--------ELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQK 441
S E+P +S + I L+GLF L Y F +N DY++A+Q+
Sbjct: 363 EEKVPSIHGKEEAREIPVISASTQIMLKGLFMVLDYLFRQNSRFADDYKVAIQQ 416
Score = 139 (54.0 bits), Expect = 1.5e-72, Sum P(3) = 1.5e-72
Identities = 27/64 (42%), Positives = 41/64 (64%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEECKLLLG 202
P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C + V N +E+C LL
Sbjct: 180 PKIYFGTRTHKQIAQITRELQRTAYSGVPMTILSSRDHTCVHPEVMGNFNRNEKCMELLD 239
Query: 203 DRNL 206
+N+
Sbjct: 240 GKNM 243
Score = 43 (20.2 bits), Expect = 8.4e-54, Sum P(3) = 8.4e-54
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 272 PVIRGAMEVDIKGAILILD 290
PVI + ++ +KG ++LD
Sbjct: 379 PVISASTQIMLKGLFMVLD 397
Score = 38 (18.4 bits), Expect = 5.8e-62, Sum P(3) = 5.8e-62
Identities = 23/101 (22%), Positives = 36/101 (35%)
Query: 115 SQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRV-PMA 173
S PST PPS T + + + A + S +++ R+ P+
Sbjct: 40 SSPST-PPSERNGTLSGSQEDSPEKTTLAAKLS-AKKQASMYRDENDDFQVEKKRIRPLE 97
Query: 174 VLAS-RKHYCTNKYVR--DKENIDEECKLL---LGDRNLGC 208
RK +C K V D + E+ L LG + C
Sbjct: 98 TAQQIRKRHCFEKEVHHLDAKVASEKTTKLNSPLGKKTYSC 138
Score = 37 (18.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 643 INDIQVSLKKKYNDTYRSSKNLLSGNEWYCN 673
IN ++ S + Y SS + SG+E N
Sbjct: 308 INWLEASSEHLVERNYESSCKVWSGSEMLLN 338
>UNIPROTKB|I3LBL1 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00530000063199 EMBL:CU914462 EMBL:CU694840
Ensembl:ENSSSCT00000025154 OMA:TEAWDIE Uniprot:I3LBL1
Length = 709
Score = 503 (182.1 bits), Expect = 2.7e-72, Sum P(3) = 2.7e-72
Identities = 122/389 (31%), Positives = 199/389 (51%)
Query: 67 KSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNG 126
K + L + +A +N KL++ I+ P +A +P G ST
Sbjct: 178 KDVQHLDAEVASGKNTKLESPTGKINSFSPQNDAFLNP----PGHCSRCCCST--KQGKS 231
Query: 127 QTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNK 185
Q + P I++ +RTH QI+Q+ E ++TAY VPM +L+SR H C +
Sbjct: 232 QDSSDTTKKDHGGKSKIPKIYFGTRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHP 291
Query: 186 YVRDKENIDEECKLLLGDRN-LGCPQFKNVHKVRGHPSLQK--GGCHEVHDIEDLVNVGQ 242
V N E C LL RN C + +HK+ +LQ G C + DIE+LV +G+
Sbjct: 292 EVVGNFNRKENCMELLDGRNGKSCYLYHGIHKISDQRTLQTLHGMC-KAWDIEELVTLGK 350
Query: 243 VVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDA 302
++ C YY AR + DA ++FCPY+Y+++ IR +ME+++K ++ILDEAHNIED AR++
Sbjct: 351 KIKACPYYTARELMQDADIIFCPYNYLLDVQIRESMEINLKEQVVILDEAHNIEDCARES 410
Query: 303 GSVDIDEDVLLKLQMELEQVC--SVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFF 360
S + E L + EL+ + ++ ++P+ + L+ W+E L +R+++
Sbjct: 411 ASYSVTEVQLRFARDELDSMVINNIRKKDHEPIRAVCYSLINWLEVNSEHLMERDYESSC 470
Query: 361 SCWTGDKALRELQEANISRQCFPIL-------LECATKAIKEATDTES-ELPHLSGMSVI 412
W+G + L L + I+ FPIL L+ K E+ E+P +S + +
Sbjct: 471 KIWSGSEMLSNLHKMGITTATFPILQGHLFAILQKEEKVSSIHGKEEAVEIPIISASTRV 530
Query: 413 TLEGLFSSLTYFFSRNGSHVSDYQLALQK 441
L+GLF L Y F +N DY++A+Q+
Sbjct: 531 MLKGLFMVLDYLFRQNSRFADDYKVAIQQ 559
Score = 179 (68.1 bits), Expect = 2.7e-72, Sum P(3) = 2.7e-72
Identities = 35/64 (54%), Positives = 47/64 (73%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG++++FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS LA
Sbjct: 8 YTIGGVKIDFPYKAYPSQLAMMNSIVRGLNSKQ---HC--LLESPTGSGKSLALLCSALA 62
Query: 78 WQQN 81
WQQ+
Sbjct: 63 WQQS 66
Score = 155 (59.6 bits), Expect = 2.7e-72, Sum P(3) = 2.7e-72
Identities = 36/103 (34%), Positives = 50/103 (48%)
Query: 444 KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTC 503
K + P L+ WCLNPAV F D+ PM SFSSELGV F
Sbjct: 580 KNKKRLPQKTAVRVLNFWCLNPAVAFSDINGKVWNIVLTSGTLSPMKSFSSELGVTFTIQ 639
Query: 504 LEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKL 546
LEA HVI+ + QV I +GP L A+++ + + +++
Sbjct: 640 LEANHVIN-NSQVWVGTIGSGPQGRNLCATFQHTETFAFQDEV 681
Score = 52 (23.4 bits), Expect = 9.0e-10, Sum P(2) = 9.0e-10
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 769 KEVTKQNTQELNKSDHSGQNVQSISKYDPFS-HQKSQGNFEVQTSLQT--DQNN--SCIE 823
K++ Q T+EL ++ +SG + +S D H + GNF + + D N SC
Sbjct: 259 KQIA-QITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRKENCMELLDGRNGKSCYL 317
Query: 824 YIDLERMNDK 833
Y + +++D+
Sbjct: 318 YHGIHKISDQ 327
Score = 45 (20.9 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 18/92 (19%), Positives = 42/92 (45%)
Query: 808 EVQTSLQTDQNNSCIEYIDLERMND--KNNHSIDSSKGSTRKENKKLNSY--DNSGQKLH 863
+++ S++ + + + + D + + S ++ R +L+S +N +K H
Sbjct: 381 QIRESMEINLKEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMVINNIRKKDH 440
Query: 864 SSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCK 895
++ + +N L EV + ++ D SSCK
Sbjct: 441 EPIRAVCYSLINWL-EVNSEHLMERDYESSCK 471
Score = 42 (19.8 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 29/126 (23%), Positives = 45/126 (35%)
Query: 43 ISTLDRAQRDGHCHALLESPTGTGKSLSLLCST-LAWQQNCKLKNQLANISHSKPDTEAV 101
+ LD G + LESPTG S S L +C + K +
Sbjct: 180 VQHLDAEVASGK-NTKLESPTGKINSFSPQNDAFLNPPGHCS--RCCCSTKQGKSQDSSD 236
Query: 102 TDPLANGG-GFIPESQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQIS-QV 159
T +GG IP+ T T+ Q AQ+ P +SR H+ + +V
Sbjct: 237 TTKKDHGGKSKIPKIYFGT---RTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEV 293
Query: 160 ISEYKK 165
+ + +
Sbjct: 294 VGNFNR 299
Score = 41 (19.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 19/68 (27%), Positives = 27/68 (39%)
Query: 908 SRCCEASSMPFSNEDPELLLVKETPAMDDNNTMASP----GSLSKDGNS-SSTIFQASTQ 962
S CC S F+N D V + + +N P GSLS +S T A
Sbjct: 85 SCCCTCHSKNFANND-----VNQETSFHFSNPSTPPSERSGSLSTCQDSPGKTTLAAKLS 139
Query: 963 SPDQLSVH 970
+ Q S++
Sbjct: 140 AKKQASMY 147
Score = 38 (18.4 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 643 INDIQVSLKKKYNDTYRSSKNLLSGNEWYCN 673
IN ++V+ + Y SS + SG+E N
Sbjct: 451 INWLEVNSEHLMERDYESSCKIWSGSEMLSN 481
Score = 38 (18.4 bits), Expect = 2.6e-08, Sum P(3) = 2.6e-08
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 769 KEVTKQNTQELNKSDHSGQN 788
K+ Q++ + K DH G++
Sbjct: 227 KQGKSQDSSDTTKKDHGGKS 246
>UNIPROTKB|B4L1Z2 [details] [associations]
symbol:GI15901 "Regulator of telomere elongation helicase 1
homolog" species:7230 "Drosophila mojavensis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 TIGRFAMs:TIGR00604
EMBL:CH933810 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002010396.1
EnsemblMetazoa:FBtr0166626 GeneID:6584754 KEGG:dmo:Dmoj_GI15901
FlyBase:FBgn0138650 InParanoid:B4L1Z2 Uniprot:B4L1Z2
Length = 1014
Score = 394 (143.8 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 151/535 (28%), Positives = 238/535 (44%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 455 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 513
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN S DG Y ++ + +
Sbjct: 514 YVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVD 573
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI--SQGSKCAXXXXXXXXXEG 606
W+ +G W+ L+++KP+F+EP+G Q F ++ +Y +I S+G+ C EG
Sbjct: 574 AWQASGLWADLSSRKPIFLEPRGKDQ--FTSTMEEFYQAIRDSKGA-CFMAVCRGKVSEG 630
Query: 607 NNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LL 665
+ A++ G R I+ G+PFP + D +V LK++Y +T R+ +N LL
Sbjct: 631 ---------LDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLETNRTKENQLL 674
Query: 666 SGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQ 722
SG EWY A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SKW+R + Q
Sbjct: 675 SGQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDARFQDASQVQQLSKWIRGHLGARPQ 734
Query: 723 YDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVT---KQNTQEL 779
F + L+ FF+ + + M E + ++ +T NTQ +
Sbjct: 735 SSPFGPIVRELRQFFKHAE----QTMVQPDERVVEPPLQIVCKEEQPTLTPSYNSNTQ-I 789
Query: 780 NKSDHSGQNVQSIS-----KYDPFSHQKSQGNFE-VQTSLQTDQNNSCIEYID-LERMND 832
+ SG N ++ K + + KS + V + T+Q+ + +D + R+N
Sbjct: 790 KREPGSGVNKFQLASELAAKAEMANSIKSWTPADYVNAAGCTNQSQTAPNAMDFMSRLNS 849
Query: 833 KNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVS 892
N SID + K +K+ S + + L S K F ++ D V+ + +
Sbjct: 850 -NVTSIDFNNTDLVKIHKRERSSPTANESLTSGKK--RFKLISSTDMVKTEPGTS----N 902
Query: 893 SCKDYINTQCSLQKSSRCCEASSMPFS-NEDPELL--LVKETPAMDDNNTMASPG 944
SC Y NT S SRCC A + E PE ++E ++ D++ S G
Sbjct: 903 SCS-YGNTSSS-GSDSRCCSAKPAEYPLKEAPESRADFLREVRSVVDSDKFRSFG 955
Score = 301 (111.0 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 70/199 (35%), Positives = 110/199 (55%)
Query: 123 STNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHY 181
S G + +A+ P + YASRTHSQ++Q + E K+TAY + VL SR
Sbjct: 87 SATGAISDLALTMGKANNWGVPKVIYASRTHSQLTQAMRELKRTAYASMRSVVLGSRDQL 146
Query: 182 CTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLV 238
C + V +++ N ++ CKL + + C V + HP +G + DIEDLV
Sbjct: 147 CIHPDVMKEQGNSNKVNMCKLKVHAKT--CSFQLRVESKKDHPDF-RGP--SIMDIEDLV 201
Query: 239 NVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDI 298
VGQ ++ C YYA++ + A + F PY+Y+++P R A ++++ I+ILDEAHNIE I
Sbjct: 202 KVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKANKIELSNTIVILDEAHNIEKI 261
Query: 299 ARDAGSVDI-DEDVLLKLQ 316
++ SV I DV + ++
Sbjct: 262 CEESASVQIRSSDVAMAIE 280
Score = 160 (61.4 bits), Expect = 3.5e-70, Sum P(3) = 3.5e-70
Identities = 35/69 (50%), Positives = 48/69 (69%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q FM +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYEVQRAFMEKVIMCL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQL 88
+ + ++Q+
Sbjct: 61 RTRQSEHQI 69
Score = 58 (25.5 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 1021 KRRKTMVSPSVDLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSST 1072
KR ++ SP+ + L + + +R + S T+ VK + TSN+C+ + SS+
Sbjct: 866 KRERS--SPTANESLTSGK---KRFKLISSTDMVKTEPGTSNSCSYGNTSSS 912
Score = 52 (23.4 bits), Expect = 2.4e-33, Sum P(5) = 2.4e-33
Identities = 22/93 (23%), Positives = 38/93 (40%)
Query: 984 AQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANR 1043
A+ MV E+ V + E +L+ S NS+TQ +R+ V+ +AS A +
Sbjct: 752 AEQTMVQPDERVVEPPLQIVCKEEQPTLTPSYNSNTQIKREP--GSGVNKFQLASELAAK 809
Query: 1044 RIEFNSETNYVKNKSKTSNNCAESHLSSTPVMD 1076
NS ++ + C ++ MD
Sbjct: 810 AEMANSIKSWTPADYVNAAGCTNQSQTAPNAMD 842
Score = 50 (22.7 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 413 TLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWT 455
TL ++S T GS V+ +QLA + K + N +WT
Sbjct: 778 TLTPSYNSNTQIKREPGSGVNKFQLASELAAKAEMANSIKSWT 820
Score = 44 (20.5 bits), Expect = 5.9e-34, Sum P(5) = 5.9e-34
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 613 IESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY 654
+ SQ + +KG SF+ + ++ + F N DI + + +
Sbjct: 374 VASQHSMLRKGGSFMVLSD---LLNVVFANKEDIMAKVHRSF 412
Score = 38 (18.4 bits), Expect = 5.9e-34, Sum P(5) = 5.9e-34
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 929 KETPAMDDNNTMASPGSLSKDGNSSSTI 956
K+T ++N+ + G L K N++ST+
Sbjct: 422 KQTKPAGNSNSKQT-GWLGKGNNATSTV 448
Score = 37 (18.1 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 937 NNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNP 977
N + +P ++ +S + + D + +H + ++P
Sbjct: 832 NQSQTAPNAMDFMSRLNSNVTSIDFNNTDLVKIHKRERSSP 872
>UNIPROTKB|Q16X92 [details] [associations]
symbol:AAEL008960 "Regulator of telomere elongation
helicase 1 homolog" species:7159 "Aedes aegypti" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH477545 RefSeq:XP_001653621.1 UniGene:Aae.7622
ProteinModelPortal:Q16X92 PRIDE:Q16X92 EnsemblMetazoa:AAEL008960-RA
GeneID:5571306 KEGG:aag:AaeL_AAEL008960 VectorBase:AAEL008960
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
PhylomeDB:Q16X92 Uniprot:Q16X92
Length = 1010
Score = 402 (146.6 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
Identities = 104/304 (34%), Positives = 154/304 (50%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y + GI V FP++PY Q +M RVI L + + +LESPTGTGK+LSLLCS+LA
Sbjct: 4 YQINGITVNFPFEPYQVQRDYMSRVIECLQNST-----NGVLESPTGTGKTLSLLCSSLA 58
Query: 78 WQQNCKLK---NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMX 134
W + K + N NI+ K L GG E + + A+ +
Sbjct: 59 WVLHKKAQVQANMRTNITDLKEFEMVQRKKLGGDGGSGMEELLDKLHDGCGPEGAKWGV- 117
Query: 135 XXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAV-LASRKHYCTNKYVRDKENI 193
P I YASRTHSQ++QV+ E K T+Y V L SR C + V +E
Sbjct: 118 ---------PKIVYASRTHSQLTQVMQEMKNTSYSFMKGVILGSRDQLCIHPEVSKEEGN 168
Query: 194 DEE---CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYY 250
+ CK + R C + V + P + + + DIEDLV VG VR C ++
Sbjct: 169 STKTNLCKAKVQSRT--CSFYSRVESCKERPEVVS---NVIMDIEDLVKVGTKVRACPFF 223
Query: 251 AARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DE 309
++ + + A ++F PY+Y+++P R A ++I I+ILDEAHN+E + ++ S+ I
Sbjct: 224 LSKELIESADILFMPYNYLLDPKARKANNLEISNTIIILDEAHNVEKMCEESASMQIRST 283
Query: 310 DVLL 313
D+ L
Sbjct: 284 DIAL 287
Score = 384 (140.2 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
Identities = 100/316 (31%), Positives = 145/316 (45%)
Query: 458 LSLWCLNPAVVFKDV-AEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
+S WC NP + + P+ SEL + LE PH+ID QV
Sbjct: 462 VSFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVRLENPHIIDGS-QV 520
Query: 517 LTSVISTGPDNYPLNASYKTADG----------------------------YKLMEKLCN 548
++ GPD LN+SY D Y L+ K
Sbjct: 521 CVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQE 580
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ETG W++++ KP+FVEP+G Q F + YY I+ G
Sbjct: 581 AWQETGIWAQISRTKPIFVEPRGKDQ--FLNTMSEYYQKINDPD--GKGAVFMAVCRGK- 635
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A+ G R I+ G+PFP + D +V LKKKY R+ +N ++SG
Sbjct: 636 ---VSEGLDFADMNG-------RAVIITGLPFPPLKDARVILKKKYLQEVRTRENEIISG 685
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIK--QYDS 725
+EWY +A RA+NQAIGR IRH+ DYGAI+L D RF R ++ +S W++K + Q+ +
Sbjct: 686 DEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRFHNHRQKSQLSSWIQKHLNTNQHQN 745
Query: 726 FDASLEGLKSFFRDVK 741
F + L FFR+ +
Sbjct: 746 FGPIIGELSRFFRNAE 761
Score = 54 (24.1 bits), Expect = 1.2e-68, Sum P(3) = 1.2e-68
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 980 VPSSAQPEMVVTPEKE-VTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMAS 1038
+PSS+Q +V ++E TG D+S+ S + TQK+RK ++ P + L +
Sbjct: 863 MPSSSQGALVGIHKRERSTGS--------DNSIFSQTQTATQKKRKVVLIPQQVINLTSD 914
Query: 1039 RE 1040
E
Sbjct: 915 DE 916
Score = 42 (19.8 bits), Expect = 2.8e-32, Sum P(2) = 2.8e-32
Identities = 62/282 (21%), Positives = 113/282 (40%)
Query: 738 RDVKGWVGKKMFNGLENSDNDV---DHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISK 794
+D + + KK + +N++ D S++ + V + + + + G + ++
Sbjct: 661 KDARVILKKKYLQEVRTRENEIISGDEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNR 720
Query: 795 YDPFSH-QKSQGNFEVQTSLQTDQNNSCIEYI-DLERMNDKNNHSIDSSKGSTR-----K 847
+ +H QKSQ + +Q L T+Q+ + I +L R + SK S +
Sbjct: 721 FH--NHRQKSQLSSWIQKHLNTNQHQNFGPIIGELSRFFRNAEKILPQSKLSRNIVTLVQ 778
Query: 848 ENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKS 907
E L + G + V D+ LD++ FVQ++ N S +
Sbjct: 779 EPTPLIECNIPGALI---VNRDT---KRKLDDIR-NNFVQIENS-------NQVTSTFRI 824
Query: 908 SRCCEASSMPFSNEDPELL--LVKETPAMDDNN--TMASPGSLSKDGNSSSTIFQASTQS 963
S +A S SNE L L + ++D N+ T + P S S+ + ST S
Sbjct: 825 SDYEQAPSQSASNEPKNFLSRLNTQVHSIDFNDMTTYSMPSS-SQGALVGIHKRERSTGS 883
Query: 964 PDQLSVHSQSLTNPVR-VPSSAQPEMVVTPEKEVTGDTSNLP 1004
+ + +Q+ T R V Q + +T + E G T + P
Sbjct: 884 DNSIFSQTQTATQKKRKVVLIPQQVINLTSDDEDPGRTGDDP 925
>UNIPROTKB|E1BTS7 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00819960 Ensembl:ENSGALT00000039433
ArrayExpress:E1BTS7 Uniprot:E1BTS7
Length = 1085
Score = 365 (133.5 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 130/450 (28%), Positives = 200/450 (44%)
Query: 457 TLSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ 515
TLS WC +P + V + P++SF+ E+ + F LE PHVID Q
Sbjct: 454 TLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVID-KRQ 512
Query: 516 VLTSVISTGPDNYPLNASY-------------KTADG---------------YKLMEKLC 547
+ +I GPD LN++Y KT Y +M+K
Sbjct: 513 LWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSL 572
Query: 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGN 607
WRE R+ KP+FVEP+ ++ F V+ YY+ I+ C
Sbjct: 573 EYWREHDFAKRIEEVKPMFVEPR--NKGSFAEVMDAYYSKIA----CPKSNGAAFLAVCR 626
Query: 608 NDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY-NDTYRSSKNL-- 664
+ E + A+ G RG I+ G+PFP + +V LK ++ N+ +S+
Sbjct: 627 GKAS--EGLDFADMNG-------RGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQC 677
Query: 665 LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD 724
LSG++WY QA RA+NQAIGR IRHR DYGAI L D+RF + R + W+R + YD
Sbjct: 678 LSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYD 737
Query: 725 SFDASLEGLKSFFRDVKGWVGKKMFNGLENS-----DNDVDHVSSMDQCKEVTKQNTQEL 779
+F ++ + FFR + + + L S +NDV+ +S ++ + K +
Sbjct: 738 NFGHAVRSVSVFFRVAQEIMPPPVAQCLSGSAVTLSENDVEPSTSSERILSLQKAKILD- 796
Query: 780 NKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNS---CIEYID-LERMNDKNN 835
DH V S+ + G + T + + N+ CI +D LER N+KN+
Sbjct: 797 ---DH----VPSLKRKRIVVPVNGDGASNLCTEYEQEMNSPRRRCIGLLDALER-NEKNS 848
Query: 836 HSI--DSSKGSTR--KENKKLNSYDNSGQK 861
D+ + ST + K+L G+K
Sbjct: 849 KEAEEDAQRLSTLSLQYEKRLTDEQKGGRK 878
Score = 311 (114.5 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 66/167 (39%), Positives = 99/167 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E K T YR + VL SR+ C N V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVKRQESNHMQIYMCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R C + NV + S +KG + DIEDLV G R C YY +RS+ A
Sbjct: 167 VMAR--ACHFYNNVEE----KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI 307
++F PY+Y+++ R A +++KG ++ILDEAHN+E + ++ S D+
Sbjct: 221 IIFMPYNYLLDAKSRRAHNIELKGTVVILDEAHNVERLCEESSSFDL 267
Score = 158 (60.7 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
G+ V+FP+QPY Q +M +V+ L + + +G +LESPTGTGK+L LLCSTLAW+++
Sbjct: 8 GVTVDFPFQPYECQETYMAKVLECL-QTKVNG----ILESPTGTGKTLCLLCSTLAWREH 62
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGG 109
K I+ E D P+++ G
Sbjct: 63 FKDTISARKIAQRMNGVELFPDRPMSSWG 91
Score = 44 (20.5 bits), Expect = 9.6e-40, Sum P(3) = 9.6e-40
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFK 212
+P + ASR H + + + +N K+ +LG R C P+ K
Sbjct: 106 IPKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVK 151
Score = 37 (18.1 bits), Expect = 3.9e-33, Sum P(3) = 3.9e-33
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 1042 NRRIEFNSETNYVKNKSKTSNNCAE--SH-----LSSTPVMDKTLQ 1080
N E +Y+ + KT N H S PVMDK+L+
Sbjct: 528 NSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLE 573
>UNIPROTKB|E1BTS6 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00822587 Ensembl:ENSGALT00000039434
ArrayExpress:E1BTS6 Uniprot:E1BTS6
Length = 1124
Score = 365 (133.5 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 130/450 (28%), Positives = 200/450 (44%)
Query: 457 TLSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ 515
TLS WC +P + V + P++SF+ E+ + F LE PHVID Q
Sbjct: 454 TLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVID-KRQ 512
Query: 516 VLTSVISTGPDNYPLNASY-------------KTADG---------------YKLMEKLC 547
+ +I GPD LN++Y KT Y +M+K
Sbjct: 513 LWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSL 572
Query: 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGN 607
WRE R+ KP+FVEP+ ++ F V+ YY+ I+ C
Sbjct: 573 EYWREHDFAKRIEEVKPMFVEPR--NKGSFAEVMDAYYSKIA----CPKSNGAAFLAVCR 626
Query: 608 NDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY-NDTYRSSKNL-- 664
+ E + A+ G RG I+ G+PFP + +V LK ++ N+ +S+
Sbjct: 627 GKAS--EGLDFADMNG-------RGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQC 677
Query: 665 LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD 724
LSG++WY QA RA+NQAIGR IRHR DYGAI L D+RF + R + W+R + YD
Sbjct: 678 LSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYD 737
Query: 725 SFDASLEGLKSFFRDVKGWVGKKMFNGLENS-----DNDVDHVSSMDQCKEVTKQNTQEL 779
+F ++ + FFR + + + L S +NDV+ +S ++ + K +
Sbjct: 738 NFGHAVRSVSVFFRVAQEIMPPPVAQCLSGSAVTLSENDVEPSTSSERILSLQKAKILD- 796
Query: 780 NKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNS---CIEYID-LERMNDKNN 835
DH V S+ + G + T + + N+ CI +D LER N+KN+
Sbjct: 797 ---DH----VPSLKRKRIVVPVNGDGASNLCTEYEQEMNSPRRRCIGLLDALER-NEKNS 848
Query: 836 HSI--DSSKGSTR--KENKKLNSYDNSGQK 861
D+ + ST + K+L G+K
Sbjct: 849 KEAEEDAQRLSTLSLQYEKRLTDEQKGGRK 878
Score = 311 (114.5 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 66/167 (39%), Positives = 99/167 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E K T YR + VL SR+ C N V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVKRQESNHMQIYMCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R C + NV + S +KG + DIEDLV G R C YY +RS+ A
Sbjct: 167 VMAR--ACHFYNNVEE----KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI 307
++F PY+Y+++ R A +++KG ++ILDEAHN+E + ++ S D+
Sbjct: 221 IIFMPYNYLLDAKSRRAHNIELKGTVVILDEAHNVERLCEESSSFDL 267
Score = 158 (60.7 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
G+ V+FP+QPY Q +M +V+ L + + +G +LESPTGTGK+L LLCSTLAW+++
Sbjct: 8 GVTVDFPFQPYECQETYMAKVLECL-QTKVNG----ILESPTGTGKTLCLLCSTLAWREH 62
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGG 109
K I+ E D P+++ G
Sbjct: 63 FKDTISARKIAQRMNGVELFPDRPMSSWG 91
Score = 44 (20.5 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFK 212
+P + ASR H + + + +N K+ +LG R C P+ K
Sbjct: 106 IPKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVK 151
Score = 37 (18.1 bits), Expect = 4.6e-33, Sum P(3) = 4.6e-33
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 1042 NRRIEFNSETNYVKNKSKTSNNCAE--SH-----LSSTPVMDKTLQ 1080
N E +Y+ + KT N H S PVMDK+L+
Sbjct: 528 NSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLE 573
>UNIPROTKB|F1NE49 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0000723
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 OMA:VLKMQFL
EMBL:AADN02019151 EMBL:AADN02019152 EMBL:AADN02019153
IPI:IPI00597328 Ensembl:ENSGALT00000009881 ArrayExpress:F1NE49
Uniprot:F1NE49
Length = 1127
Score = 365 (133.5 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 130/450 (28%), Positives = 200/450 (44%)
Query: 457 TLSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ 515
TLS WC +P + V + P++SF+ E+ + F LE PHVID Q
Sbjct: 456 TLSYWCFSPGYSMHELVRQGVRTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVID-KRQ 514
Query: 516 VLTSVISTGPDNYPLNASY-------------KTADG---------------YKLMEKLC 547
+ +I GPD LN++Y KT Y +M+K
Sbjct: 515 LWVGIIPKGPDGTVLNSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSL 574
Query: 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGN 607
WRE R+ KP+FVEP+ ++ F V+ YY+ I+ C
Sbjct: 575 EYWREHDFAKRIEEVKPMFVEPR--NKGSFAEVMDAYYSKIA----CPKSNGAAFLAVCR 628
Query: 608 NDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY-NDTYRSSKNL-- 664
+ E + A+ G RG I+ G+PFP + +V LK ++ N+ +S+
Sbjct: 629 GKAS--EGLDFADMNG-------RGVIITGLPFPPRWEPRVVLKMQFLNEMKKSNMGAQC 679
Query: 665 LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD 724
LSG++WY QA RA+NQAIGR IRHR DYGAI L D+RF + R + W+R + YD
Sbjct: 680 LSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCDDRFTTDNVRGKLPSWVRPYVNVYD 739
Query: 725 SFDASLEGLKSFFRDVKGWVGKKMFNGLENS-----DNDVDHVSSMDQCKEVTKQNTQEL 779
+F ++ + FFR + + + L S +NDV+ +S ++ + K +
Sbjct: 740 NFGHAVRSVSVFFRVAQEIMPPPVAQCLSGSAVTLSENDVEPSTSSERILSLQKAKILD- 798
Query: 780 NKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSLQTDQNNS---CIEYID-LERMNDKNN 835
DH V S+ + G + T + + N+ CI +D LER N+KN+
Sbjct: 799 ---DH----VPSLKRKRIVVPVNGDGASNLCTEYEQEMNSPRRRCIGLLDALER-NEKNS 850
Query: 836 HSI--DSSKGSTR--KENKKLNSYDNSGQK 861
D+ + ST + K+L G+K
Sbjct: 851 KEAEEDAQRLSTLSLQYEKRLTDEQKGGRK 880
Score = 311 (114.5 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 66/167 (39%), Positives = 99/167 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E K T YR + VL SR+ C N V+ +E+ + C+
Sbjct: 109 PKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVKRQESNHMQIYMCRKK 168
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R C + NV + S +KG + DIEDLV G R C YY +RS+ A
Sbjct: 169 VMAR--ACHFYNNVEE----KSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQAD 222
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI 307
++F PY+Y+++ R A +++KG ++ILDEAHN+E + ++ S D+
Sbjct: 223 IIFMPYNYLLDAKSRRAHNIELKGTVVILDEAHNVERLCEESSSFDL 269
Score = 158 (60.7 bits), Expect = 1.5e-67, Sum P(3) = 1.5e-67
Identities = 36/89 (40%), Positives = 54/89 (60%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
G+ V+FP+QPY Q +M +V+ L + + +G +LESPTGTGK+L LLCSTLAW+++
Sbjct: 10 GVTVDFPFQPYECQETYMAKVLECL-QTKVNG----ILESPTGTGKTLCLLCSTLAWREH 64
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGG 109
K I+ E D P+++ G
Sbjct: 65 FKDTISARKIAQRMNGVELFPDRPMSSWG 93
Score = 44 (20.5 bits), Expect = 1.2e-39, Sum P(3) = 1.2e-39
Identities = 13/46 (28%), Positives = 22/46 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFK 212
+P + ASR H + + + +N K+ +LG R C P+ K
Sbjct: 108 IPKIIYASRTHSQLTQVINELKNTVYRPKICVLGSREQLCINPEVK 153
Score = 37 (18.1 bits), Expect = 4.7e-33, Sum P(3) = 4.7e-33
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 1042 NRRIEFNSETNYVKNKSKTSNNCAE--SH-----LSSTPVMDKTLQ 1080
N E +Y+ + KT N H S PVMDK+L+
Sbjct: 530 NSAYERRFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLE 575
>UNIPROTKB|B3MSG8 [details] [associations]
symbol:GF20802 "Regulator of telomere elongation helicase 1
homolog" species:7217 "Drosophila ananassae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH902622 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001964274.1
EnsemblMetazoa:FBtr0125502 GeneID:6503494 KEGG:dan:Dana_GF20802
FlyBase:FBgn0097808 InParanoid:B3MSG8 Uniprot:B3MSG8
Length = 994
Score = 371 (135.7 bits), Expect = 2.9e-67, Sum P(3) = 2.9e-67
Identities = 122/463 (26%), Positives = 204/463 (44%)
Query: 452 GNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVI 510
G ++ WC NP + + P+ +EL + LE PH++
Sbjct: 448 GKVAKIINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIV 507
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADG----------------------------YKL 542
D QV +I TGPD PL ++Y D Y +
Sbjct: 508 DQS-QVYVKIIGTGPDRQPLISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPM 566
Query: 543 MEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI--SQGSKCAXXXXX 600
+ K + W+ +G W+ + +KKP+F+EP+G Q F ++ +Y +I S+G+ C
Sbjct: 567 LNKCVDAWQASGLWADIASKKPIFLEPRGKDQ--FTSTMEEFYQAIRDSKGA-CFMAVCR 623
Query: 601 XXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRS 660
EG + A++ G R I+ G+PFP + D +V LK++Y ++ R+
Sbjct: 624 GKVSEG---------LDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLESNRT 667
Query: 661 SKN-LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+N LLSGNEWY +A RA+NQAIGR IRHR DYGAI+L D RF++ +SKW+R
Sbjct: 668 RENQLLSGNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDSRFKDAAQVQQLSKWIRGH 727
Query: 720 I---KQYDSFDASLEGLKSFFRDVKGWVGK--KMFNG--LENSDNDVDH-VSSMDQCKEV 771
+ Q F + L+ FF++ + + + + +G LE D ++ + Q K
Sbjct: 728 LGDRPQCSPFGPIVRELRQFFKNAETTMKQPDERESGAPLETVIKKEDEPLAPISQIKRE 787
Query: 772 TKQNT--QELNKSDHSGQNVQSISKYDPFSHQ----KSQGNFEVQTSLQ-TDQNNSCIEY 824
N + N++ + SI + P + + G ++ + +S +
Sbjct: 788 PGSNATFKAANETAIKVEMANSIKSWSPDDYACAAGRKLGGSSAPNAMDFMSRLDSNVSS 847
Query: 825 IDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVK 867
ID M+ +N +S G + ++ +S S Q + K
Sbjct: 848 IDFNCMDSRNG---SNSSGLVKIHKRERSSPPGSSQSSSQTAK 887
Score = 296 (109.3 bits), Expect = 2.9e-67, Sum P(3) = 2.9e-67
Identities = 67/178 (37%), Positives = 103/178 (57%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTNKYV-RDKENIDEE--CKL 199
P + YASRTHSQ++Q + E K+TAY + VL SR C + V R+ N ++ CKL
Sbjct: 107 PKVIYASRTHSQLTQAMRELKRTAYSNMRSVVLGSRDQLCIHPEVSREVGNSNKVNMCKL 166
Query: 200 LLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
+ + C V + HP +G + DIEDL+ VGQ ++ C YYA++ + A
Sbjct: 167 RVHSKT--CTFQLRVESKKDHPDF-RGP--SIMDIEDLIKVGQKLKMCPYYASKELVPQA 221
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
+ F PY+Y+++P R A ++++ I+ILDEAHNIE I ++ SV I DV + ++
Sbjct: 222 DITFMPYNYLLDPKARKANKIELGNTIVILDEAHNIEKICEESASVQIKSSDVAIAIE 279
Score = 161 (61.7 bits), Expect = 2.9e-67, Sum P(3) = 2.9e-67
Identities = 43/95 (45%), Positives = 57/95 (60%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L +DG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYPVQRAYMEKVIQCL----KDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPE 114
+ + ++Q I K D A D L G G PE
Sbjct: 61 RTRQSEHQQQMI---KLDKGA--DLLGGGAGGGPE 90
Score = 43 (20.2 bits), Expect = 1.3e-32, Sum P(3) = 1.3e-32
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 567 VEPKGGSQEDFEIVLKHYYNSISQGSKC 594
+E K GS++ FE ++K + + G +C
Sbjct: 939 LEYKDGSKDKFEALMKVVFEVLG-GPRC 965
Score = 40 (19.1 bits), Expect = 1.6e-40, Sum P(3) = 1.6e-40
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 164 KKTAYRVPMAVLASRKHYCTNKYVRD-KENIDEECK-LLLGDRNLGC 208
K + VP + ASR H + +R+ K + ++LG R+ C
Sbjct: 100 KANNWGVPKVIYASRTHSQLTQAMRELKRTAYSNMRSVVLGSRDQLC 146
Score = 37 (18.1 bits), Expect = 5.3e-32, Sum P(3) = 5.3e-32
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 969 VHSQSLTNPVRVPSSAQPEMVVTPEKEVTG 998
VH+ S V+V S QP+ P K+ G
Sbjct: 407 VHA-SFKVHVQVEESKQPQGKQAPAKQAGG 435
>UNIPROTKB|B3NSW1 [details] [associations]
symbol:GG18780 "Regulator of telomere elongation helicase 1
homolog" species:7220 "Drosophila erecta" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:CH954180
KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001977003.1
EnsemblMetazoa:FBtr0138834 GeneID:6550838 KEGG:der:Dere_GG18780
FlyBase:FBgn0110988 Uniprot:B3NSW1
Length = 985
Score = 356 (130.4 bits), Expect = 8.2e-67, Sum P(4) = 8.2e-67
Identities = 100/317 (31%), Positives = 152/317 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 512
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN S DG Y ++ K +
Sbjct: 513 YVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVD 572
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+F+EP+ S++ F ++ +Y +I + SK A G
Sbjct: 573 AWQASGLWADISCKKPIFLEPR--SKDQFTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 625
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y + R+ +N LLSG
Sbjct: 626 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSG 675
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RF++ +SKW+R + Q
Sbjct: 676 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCS 735
Query: 725 SFDASLEGLKSFFRDVK 741
F + L+ FF++ +
Sbjct: 736 PFGPIVRELRQFFKNAE 752
Score = 306 (112.8 bits), Expect = 8.2e-67, Sum P(4) = 8.2e-67
Identities = 71/199 (35%), Positives = 111/199 (55%)
Query: 123 STNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHY 181
+T G+ + + P + YASRTHSQ++Q + E K+TAY + VL SR
Sbjct: 86 ATGGELSDLGKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQL 145
Query: 182 CTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLV 238
C + V R++ N ++ CKL + + C V + HP L +G + DIEDLV
Sbjct: 146 CIHPEVMREQGNSNKTNMCKLRVHSKT--CTFQMRVESRKDHPDL-RGP--SIMDIEDLV 200
Query: 239 NVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDI 298
VGQ ++ C Y+A+R + A + F PY+Y+++P R A ++++ I+ILDEAHNIE I
Sbjct: 201 KVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDEAHNIEKI 260
Query: 299 ARDAGSVDI-DEDVLLKLQ 316
++ SV I DV + ++
Sbjct: 261 CEESASVQIKSSDVAMAIE 279
Score = 164 (62.8 bits), Expect = 8.2e-67, Sum P(4) = 8.2e-67
Identities = 39/90 (43%), Positives = 54/90 (60%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYPVQRAYMEKVIQCL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGG 109
+ + ++Q + K D + A GG
Sbjct: 61 RTRQSEHQQQMVKIEKADFSGLAGG-ATGG 89
Score = 45 (20.9 bits), Expect = 8.2e-67, Sum P(4) = 8.2e-67
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 949 DGNSSSTIFQASTQSP----DQLSVHSQSLTNPVRVPSSAQ 985
D N SS F T S D + +H + ++P SS+Q
Sbjct: 841 DSNVSSIDFNCCTDSKSGSSDLVKIHKRERSSPTLPESSSQ 881
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 943 PGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPS 982
P + + GNS+ T + +L VHS++ T +RV S
Sbjct: 149 PEVMREQGNSNKT-------NMCKLRVHSKTCTFQMRVES 181
>UNIPROTKB|B4GU19 [details] [associations]
symbol:GL14463 "Regulator of telomere elongation helicase 1
homolog" species:7234 "Drosophila persimilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136
OrthoDB:EOG4S4MX7 EMBL:CH479190 RefSeq:XP_002022098.1
EnsemblMetazoa:FBtr0180078 GeneID:6596883 KEGG:dpe:Dper_GL14463
FlyBase:FBgn0152068 Uniprot:B4GU19
Length = 1009
Score = 363 (132.8 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 99/314 (31%), Positives = 148/314 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 455 VNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 513
Query: 517 LTSVISTGPDNYPLNASYKTADG----------------------------YKLMEKLCN 548
+I TGPD L +++K D Y ++ K +
Sbjct: 514 YVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVD 573
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+FVEP+G Q F ++ +Y +I + SK A G
Sbjct: 574 AWQASGLWADISCKKPIFVEPRGKDQ--FTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 626
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y +T R+ +N LLSG
Sbjct: 627 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLETNRTKENQLLSG 676
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SKW+R + Q
Sbjct: 677 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGARPQSS 736
Query: 725 SFDASLEGLKSFFR 738
F + L+ FF+
Sbjct: 737 PFGPIVRELRQFFK 750
Score = 306 (112.8 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 73/208 (35%), Positives = 114/208 (54%)
Query: 114 ESQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPM 172
E P + P G +++AM P + YASRTHSQ++Q + E K+TAY +
Sbjct: 80 EGGPGSGP---GGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAMRELKRTAYANMRS 136
Query: 173 AVLASRKHYCTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCH 229
VL SR C + V +++ N ++ CKL + + C V + HP +G
Sbjct: 137 VVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHSKT--CTFQLRVESKKDHPDF-RGP-- 191
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILIL 289
+ DIEDLV VGQ ++ C YYA++ + A + F PY+Y+++P R A ++++ I+IL
Sbjct: 192 SIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELGNTIIIL 251
Query: 290 DEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
DEAHNIE I ++ SV I DV + ++
Sbjct: 252 DEAHNIEKICEESASVQIRSSDVAMAIE 279
Score = 153 (58.9 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLC++LAW
Sbjct: 6 IAGIPVHFPFEPYNVQRDYMEKVIICL----RDG-TNGVLESPTGTGKTLSLLCASLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPE 114
+ + ++Q I E P + GG + E
Sbjct: 61 RTRQSEHQQQMIKLKATSKEG--GPGSGPGGDLSE 93
>UNIPROTKB|Q29FS3 [details] [associations]
symbol:GA17940 "Regulator of telomere elongation helicase 1
homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH379065 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001354453.2
GeneID:4814338 KEGG:dpo:Dpse_GA17940 FlyBase:FBgn0077949
InParanoid:Q29FS3 Uniprot:Q29FS3
Length = 1009
Score = 363 (132.8 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 99/314 (31%), Positives = 148/314 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 455 VNFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 513
Query: 517 LTSVISTGPDNYPLNASYKTADG----------------------------YKLMEKLCN 548
+I TGPD L +++K D Y ++ K +
Sbjct: 514 YVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVD 573
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+FVEP+G Q F ++ +Y +I + SK A G
Sbjct: 574 AWQASGLWADISCKKPIFVEPRGKDQ--FTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 626
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y +T R+ +N LLSG
Sbjct: 627 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLETNRTKENQLLSG 676
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SKW+R + Q
Sbjct: 677 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHLGARPQSS 736
Query: 725 SFDASLEGLKSFFR 738
F + L+ FF+
Sbjct: 737 PFGPIVRELRQFFK 750
Score = 306 (112.8 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 73/208 (35%), Positives = 114/208 (54%)
Query: 114 ESQPSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPM 172
E P + P G +++AM P + YASRTHSQ++Q + E K+TAY +
Sbjct: 80 EGGPGSGP---GGDLSELAMTVGQANNWGVPKVIYASRTHSQLNQAMRELKRTAYANMRS 136
Query: 173 AVLASRKHYCTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCH 229
VL SR C + V +++ N ++ CKL + + C V + HP +G
Sbjct: 137 VVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHSKT--CTFQLRVESKKDHPDF-RGP-- 191
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILIL 289
+ DIEDLV VGQ ++ C YYA++ + A + F PY+Y+++P R A ++++ I+IL
Sbjct: 192 SIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKANKIELGNTIIIL 251
Query: 290 DEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
DEAHNIE I ++ SV I DV + ++
Sbjct: 252 DEAHNIEKICEESASVQIRSSDVAMAIE 279
Score = 153 (58.9 bits), Expect = 1.5e-66, Sum P(3) = 1.5e-66
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLC++LAW
Sbjct: 6 IAGIPVHFPFEPYNVQRDYMEKVIICL----RDG-TNGVLESPTGTGKTLSLLCASLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPE 114
+ + ++Q I E P + GG + E
Sbjct: 61 RTRQSEHQQQMIKLKATSKEG--GPGSGPGGDLSE 93
>UNIPROTKB|B4PZB4 [details] [associations]
symbol:GE16425 "Regulator of telomere elongation helicase 1
homolog" species:7245 "Drosophila yakuba" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CM000162 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002099973.1
EnsemblMetazoa:FBtr0262943 GeneID:6524109 KEGG:dya:Dyak_GE16425
FlyBase:FBgn0233951 Uniprot:B4PZB4
Length = 985
Score = 356 (130.4 bits), Expect = 4.4e-66, Sum P(4) = 4.4e-66
Identities = 100/317 (31%), Positives = 152/317 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 512
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN S DG Y ++ K +
Sbjct: 513 YVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKCVD 572
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+F+EP+ S++ F ++ +Y +I + SK A G
Sbjct: 573 AWQASGLWADISVKKPIFLEPR--SKDQFTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 625
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y + R+ +N LLSG
Sbjct: 626 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSG 675
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RF++ +SKW+R + Q
Sbjct: 676 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCS 735
Query: 725 SFDASLEGLKSFFRDVK 741
F + L+ FF++ +
Sbjct: 736 PFGPIVRELRQFFKNAE 752
Score = 305 (112.4 bits), Expect = 4.4e-66, Sum P(4) = 4.4e-66
Identities = 71/199 (35%), Positives = 111/199 (55%)
Query: 123 STNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHY 181
+ G +++A P + YASRTHSQ++Q + E K+TAY + VL SR
Sbjct: 86 AAGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQL 145
Query: 182 CTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLV 238
C + V R++ N ++ CKL + + C V + HP L +G + DIEDLV
Sbjct: 146 CIHPEVMREQGNSNKTNMCKLRVHSKT--CSFQMRVESRKDHPDL-RGP--SIMDIEDLV 200
Query: 239 NVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDI 298
VGQ ++ C Y+A+R + A + F PY+Y+++P R A ++++ I+ILDEAHNIE I
Sbjct: 201 KVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDEAHNIEKI 260
Query: 299 ARDAGSVDI-DEDVLLKLQ 316
++ SV I DV + ++
Sbjct: 261 CEESASVQIKSSDVAMAIE 279
Score = 164 (62.8 bits), Expect = 4.4e-66, Sum P(4) = 4.4e-66
Identities = 38/89 (42%), Positives = 53/89 (59%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYPVQRAYMEKVIQCL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANG 108
+ + ++Q + K D + A G
Sbjct: 61 RTRQSEHQQQMVKMEKADFTGLGGGAAGG 89
Score = 39 (18.8 bits), Expect = 4.4e-66, Sum P(4) = 4.4e-66
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 949 DGNSSSTIFQ----ASTQSPDQLSVHSQSLTNPVRVPSSAQ 985
D N SS F + + S + +H + ++P + SS+Q
Sbjct: 841 DSNVSSIDFNCCMDSKSGSSGMVKIHKRERSSPTQPESSSQ 881
>FB|FBgn0029798 [details] [associations]
symbol:CG4078 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 EMBL:AE014298 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 EMBL:BT021290 EMBL:EU217688 EMBL:EU217689
EMBL:EU217690 EMBL:EU217691 EMBL:EU217692 EMBL:EU217693
EMBL:EU217694 EMBL:EU217695 EMBL:EU217696 EMBL:EU217697
EMBL:EU217698 EMBL:EU217699 RefSeq:NP_572254.1 UniGene:Dm.11709
ProteinModelPortal:Q9W484 SMR:Q9W484 IntAct:Q9W484
MINT:MINT-4080348 PaxDb:Q9W484 PRIDE:Q9W484
EnsemblMetazoa:FBtr0070807 EnsemblMetazoa:FBtr0332398 GeneID:31497
KEGG:dme:Dmel_CG4078 UCSC:CG4078-RA FlyBase:FBgn0029798
InParanoid:Q9W484 PhylomeDB:Q9W484 GenomeRNAi:31497 NextBio:773915
Bgee:Q9W484 Uniprot:Q9W484
Length = 985
Score = 353 (129.3 bits), Expect = 5.0e-66, Sum P(3) = 5.0e-66
Identities = 99/317 (31%), Positives = 152/317 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 454 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 512
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN + DG Y ++ K +
Sbjct: 513 YVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKCVD 572
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+F+EP+ S++ F ++ +Y +I + SK A G
Sbjct: 573 AWQASGLWADISCKKPIFLEPR--SKDQFTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 625
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y + R+ +N LLSG
Sbjct: 626 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSG 675
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RF++ +SKW+R + Q
Sbjct: 676 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCS 735
Query: 725 SFDASLEGLKSFFRDVK 741
F + L+ FF++ +
Sbjct: 736 PFGPIVRELRQFFKNAE 752
Score = 303 (111.7 bits), Expect = 5.0e-66, Sum P(3) = 5.0e-66
Identities = 71/196 (36%), Positives = 110/196 (56%)
Query: 126 GQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTN 184
G +++A P + YASRTHSQ++Q + E K+TAY + VL SR C +
Sbjct: 89 GDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIH 148
Query: 185 KYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVG 241
V R++ N ++ CKL + + C V + HP L +G + DIEDLV VG
Sbjct: 149 PEVMREQGNSNKTNMCKLRVHSKT--CSFQMRVESRKDHPDL-RGPT--IMDIEDLVKVG 203
Query: 242 QVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARD 301
Q ++ C Y+A+R + A + F PY+Y+++P R A ++++ I+ILDEAHNIE I +
Sbjct: 204 QRLKICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGNTIVILDEAHNIEKICEE 263
Query: 302 AGSVDI-DEDVLLKLQ 316
+ SV I DV + ++
Sbjct: 264 SASVQIKSSDVAMAIE 279
Score = 161 (61.7 bits), Expect = 5.0e-66, Sum P(3) = 5.0e-66
Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYPVQRAYMEKVIHCL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPD 97
+ + ++Q + K D
Sbjct: 61 RTRQSEHQKQMVKMEKAD 78
>UNIPROTKB|B0W9F4 [details] [associations]
symbol:CPIJ003765 "Regulator of telomere elongation
helicase 1 homolog" species:7176 "Culex quinquefasciatus"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
EMBL:DS231864 RefSeq:XP_001845338.1 ProteinModelPortal:B0W9F4
EnsemblMetazoa:CPIJ003765-RA GeneID:6035102
KEGG:cqu:CpipJ_CPIJ003765 VectorBase:CPIJ003765 PhylomeDB:B0W9F4
Uniprot:B0W9F4
Length = 978
Score = 395 (144.1 bits), Expect = 5.5e-66, Sum P(3) = 5.5e-66
Identities = 102/304 (33%), Positives = 160/304 (52%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y + GI V FP++PY Q +M RVI L + + +LESPTGTGK+LSLLCS+LA
Sbjct: 4 YLINGIPVNFPFEPYQVQRDYMARVIECLQNSS-----NGVLESPTGTGKTLSLLCSSLA 58
Query: 78 WQQNCKLK---NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMX 134
W + K + +Q N+S K + E + GGG P+ + + N + +
Sbjct: 59 WILHKKAQVQASQRTNVSELK-EFEFEKKKMGGGGGG-PKPEMDKLLDELNENSGKEGGR 116
Query: 135 XXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAV-LASRKHYCTNKYVRDKE-N 192
P I YASRTHSQ++Q + E K T+Y AV L SR C + V +E N
Sbjct: 117 WG------VPKIIYASRTHSQLTQAMQEMKNTSYGFMRAVILGSRDQLCIHPEVAKEEGN 170
Query: 193 IDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYY 250
+ CK + R C + V + P + G + DIEDLV V ++ C ++
Sbjct: 171 AVKTNLCKAKIQAR--ACSFYSRVEACKERPEIT-GST--IMDIEDLVRVSTKLKACPFF 225
Query: 251 AARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DE 309
++ + ++A ++F PY+Y+++P R A +++ I+ILDEAHN++ + ++ S+ I
Sbjct: 226 MSKELIENADVLFMPYNYLLDPKARKANNLELANTIIILDEAHNVDKMCEESASMQIRSS 285
Query: 310 DVLL 313
D+ L
Sbjct: 286 DIAL 289
Score = 378 (138.1 bits), Expect = 5.5e-66, Sum P(3) = 5.5e-66
Identities = 99/316 (31%), Positives = 146/316 (46%)
Query: 458 LSLWCLNPAVVFKDV-AEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ SEL + LE PH+ID QV
Sbjct: 464 INFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVKLENPHIIDGS-QV 522
Query: 517 LTSVISTGPDNYPLNASYKTADG----------------------------YKLMEKLCN 548
++ GPD LN+SY D Y L+ K
Sbjct: 523 CVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQE 582
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ETG W++++ KP+FVEP+G Q F + YY I+ G
Sbjct: 583 AWQETGIWAQISRTKPIFVEPRGKDQ--FLNTMTEYYAKINDPD--GKGAVFMAVCRGK- 637
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A+ G + C I+ G+PFP + D +V LKK+Y R+ +N ++SG
Sbjct: 638 ---VSEGLDFADMNGRA----C---IITGLPFPPLKDARVILKKRYLQEVRTRENEIISG 687
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIK--QYDS 725
+EWY +A RA+NQAIGR IRH+ DYGAI+L D RF R +A +S W++K + Q+ +
Sbjct: 688 DEWYSLEAARAVNQAIGRVIRHKNDYGAILLCDNRFHNPRQKAQLSSWIQKHLNTAQHPT 747
Query: 726 FDASLEGLKSFFRDVK 741
F + L FFR+ +
Sbjct: 748 FGPIVRELSQFFRNAE 763
Score = 41 (19.5 bits), Expect = 5.5e-66, Sum P(3) = 5.5e-66
Identities = 29/134 (21%), Positives = 57/134 (42%)
Query: 808 EVQTSLQTDQNNSCIEYIDLERMND-KNNH-SIDSSKGSTRKENKKLNSYDNSGQKLHSS 865
E +L D + + ++++D KNN I++S T KL+ Y Q H S
Sbjct: 781 EPPIALVPDSTSLLVSGETKKKLDDIKNNFIKIENSNAVTAF---KLSDY----QHAHRS 833
Query: 866 VKYDSFPGLNLLDEVEVQ-EFVQLDRVSSCKDYINTQC-SLQKSSRCCEASSMPFSNEDP 923
+ G + L + Q + + +SS ++ K R E++ + +
Sbjct: 834 -DATAASGKDFLSRLNTQVRTIDFNDMSSAGPSSQAGLVAIHKRERSNESTMVTQQKKRK 892
Query: 924 ELLLVKETPAMDDN 937
+L+ +ET ++DD+
Sbjct: 893 VVLIPQETISLDDS 906
Score = 39 (18.8 bits), Expect = 2.9e-31, Sum P(2) = 2.9e-31
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 924 ELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVR 979
E+LL E +D+ M S G ++ G IF+ + + +Q L N ++
Sbjct: 327 EMLLSLEK-TVDEIPVMFSQGGSTQPGTYIFEIFEKANIKEGNYHIIAQLLENIIQ 381
>UNIPROTKB|B4M891 [details] [associations]
symbol:GJ16649 "Regulator of telomere elongation helicase 1
homolog" species:7244 "Drosophila virilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH940653 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002056881.1 EnsemblMetazoa:FBtr0232574 GeneID:6633257
KEGG:dvi:Dvir_GJ16649 FlyBase:FBgn0203833 InParanoid:B4M891
Uniprot:B4M891
Length = 1005
Score = 357 (130.7 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 101/316 (31%), Positives = 151/316 (47%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 454 INFWCFNPGFGMEQLLNAHVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDRS-QV 512
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN S DG Y ++ + +
Sbjct: 513 YVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVD 572
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI--SQGSKCAXXXXXXXXXEG 606
W+ +G W+ ++ +KP+F+EP+G Q F ++ +Y +I S+G+ C EG
Sbjct: 573 AWQASGLWADISCRKPIFLEPRGKDQ--FTSTMEEFYQAIRDSKGA-CFMAVCRGKVSEG 629
Query: 607 NNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LL 665
+ A++ G R I+ G+PFP + D +V LK++Y +T R+ +N LL
Sbjct: 630 ---------LDFADRNG-------RAVIITGLPFPPLKDPKVVLKRRYLETNRTKENQLL 673
Query: 666 SGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQ 722
SG EWY A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SKW+R + Q
Sbjct: 674 SGQEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDARFQDMSQVQQLSKWIRGHLGARPQ 733
Query: 723 YDSFDASLEGLKSFFR 738
F + L+ FF+
Sbjct: 734 SSPFGPIVRELRQFFK 749
Score = 299 (110.3 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 68/178 (38%), Positives = 105/178 (58%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTNKYV-RDKENIDEE--CKL 199
P + YASRTHSQ+SQ + E K+TAY + VL SR C + V R++ N ++ CKL
Sbjct: 106 PKVIYASRTHSQLSQAMRELKRTAYANMKSVVLGSRDQLCIHPDVMREQGNSNKVNMCKL 165
Query: 200 LLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
+ + C V + HP +G + DIEDLV VGQ ++ C Y+A++ + + A
Sbjct: 166 KVHAKT--CSFQLRVESKKDHPDF-RGP--SIMDIEDLVKVGQRLKMCPYFASKELVNGA 220
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
+ F PY+Y+++P R A ++++ I+ILDEAHNIE I ++ SV I DV + ++
Sbjct: 221 DITFMPYNYLLDPKARKANKIELSNTIVILDEAHNIEKICEESASVQIRSSDVAMAIE 278
Score = 151 (58.2 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAW 78
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLC++LAW
Sbjct: 6 IAGIPVHFPFEPYEVQRAYMEKVIMCL----RDG-TNGVLESPTGTGKTLSLLCASLAW 59
Score = 45 (20.9 bits), Expect = 5.1e-38, Sum P(4) = 5.1e-38
Identities = 40/173 (23%), Positives = 71/173 (41%)
Query: 164 KKTAYRVPMAVLASRKHYCTNKYVRD-KENIDEECK-LLLGDRNLGCPQFKNVHKVRGHP 221
K + VP + ASR H ++ +R+ K K ++LG R+ C +V + +G+
Sbjct: 99 KANNWGVPKVIYASRTHSQLSQAMRELKRTAYANMKSVVLGSRDQLCIH-PDVMREQGN- 156
Query: 222 SLQKGGCH-EVHD--------IEDLVNVGQVVRGCSYYAARSMADDAQ-LVFCPYSYIIN 271
S + C +VH +E + RG S + Q L CPY +
Sbjct: 157 SNKVNMCKLKVHAKTCSFQLRVESKKDHPDF-RGPSIMDIEDLVKVGQRLKMCPY-FASK 214
Query: 272 PVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDED-VLLKLQMELEQVC 323
++ GA ++ +LD AR A +++ V+L +E++C
Sbjct: 215 ELVNGA-DITFMPYNYLLDPK------ARKANKIELSNTIVILDEAHNIEKIC 260
Score = 41 (19.5 bits), Expect = 2.3e-64, Sum P(4) = 2.3e-64
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 949 DGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVTGDTS-NLPPER 1007
+ N +S F ++ D + +H + ++P SS M+ ++ G+ P
Sbjct: 847 NANVTSIDFNSADAGQDLVKIHKRERSSPTASESS----MIAKKRYKLIGNGPLKTEPSE 902
Query: 1008 DSSLSSS 1014
++ SSS
Sbjct: 903 PATTSSS 909
>UNIPROTKB|E2RLA6 [details] [associations]
symbol:RTEL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:VLKMQFL EMBL:AAEX03014162
EMBL:AAEX03014163 Ensembl:ENSCAFT00000020689 Uniprot:E2RLA6
Length = 1232
Score = 295 (108.9 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 67/183 (36%), Positives = 106/183 (57%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 106 PKIIYASRTHSQLTQVIRELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQIHLCRKK 165
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G + C YY +R++ A
Sbjct: 166 VASRS--CHFYNNVEE----KSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQAD 219
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E + + S D+ DV L + L
Sbjct: 220 IIFMPYNYLLDTKSRRAHSIDLKGTVVIFDEAHNVEKMCEETASFDLTPHDVASGLDV-L 278
Query: 320 EQV 322
+QV
Sbjct: 279 DQV 281
Score = 289 (106.8 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 75/205 (36%), Positives = 103/205 (50%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEP--KGGSQEDFEIVLKHYYNSISQGSKCAXX 597
Y ++E+ WR +L A KP+FVEP KGG E V+ YY ++ C
Sbjct: 562 YPVLERSLQFWRTHDSAGKLEALKPVFVEPRNKGGFSE----VVDAYYARVA----CPGS 613
Query: 598 XXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDT 657
+ E + A+ G RG I+ G+P+P D +V LK ++ D
Sbjct: 614 TGATFLAVCRGKAS--EGLDFADMNG-------RGVIITGLPYPPRMDPRVVLKMQFLDE 664
Query: 658 YRSSKN----LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHIS 713
++ + LLSG+EWY QA RA+NQAIGR IRHR DYGAI L D RF RA +
Sbjct: 665 IKNHRGPGGQLLSGHEWYRQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAHVDARAQLP 724
Query: 714 KWLRKSIKQYDSFDASLEGLKSFFR 738
W+R ++ YDSF + + FFR
Sbjct: 725 SWVRPHVRVYDSFGPVIRDVAQFFR 749
Score = 150 (57.9 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP++PY Q +M +V+ L + + +LESPTGTGK+L LLCSTLAW+
Sbjct: 6 LNGVAVDFPFEPYKCQEEYMSKVLECLQK-----RVNGILESPTGTGKTLCLLCSTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 117 (46.2 bits), Expect = 1.1e-63, Sum P(4) = 1.1e-63
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P + V + P++SF+ E+ + F CLE PHVI Q+
Sbjct: 452 LSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSFALEMQIPFPVCLENPHVIHQQ-QI 510
Query: 517 LTSVISTGPDNYPLNASY 534
++S GPD L++++
Sbjct: 511 WVGIVSRGPDGAQLSSAF 528
Score = 50 (22.7 bits), Expect = 3.0e-38, Sum P(4) = 3.0e-38
Identities = 18/75 (24%), Positives = 34/75 (45%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFKNVHK--VRGHPSLQ 224
+P + ASR H + +R+ N ++ +LG R C P+ K ++ H +
Sbjct: 105 IPKIIYASRTHSQLTQVIRELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQIHLCRK 164
Query: 225 K---GGCHEVHDIED 236
K CH +++E+
Sbjct: 165 KVASRSCHFYNNVEE 179
>MGI|MGI:2139369 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
KO:K11136 CTD:51750 EMBL:AY481619 EMBL:AY481620 EMBL:AY481621
EMBL:AY481622 EMBL:AY481623 EMBL:AK173097 EMBL:AK145145
EMBL:AL928965 EMBL:BC105578 EMBL:BC144977 EMBL:BC144978
EMBL:BC145658 IPI:IPI00274165 IPI:IPI00467288 IPI:IPI00754466
IPI:IPI00756345 IPI:IPI00756903 IPI:IPI00929860
RefSeq:NP_001001882.3 RefSeq:NP_001160137.1 RefSeq:NP_001160138.1
RefSeq:NP_001160139.1 RefSeq:NP_001160140.1 UniGene:Mm.11333
ProteinModelPortal:Q0VGM9 SMR:Q0VGM9 STRING:Q0VGM9
PhosphoSite:Q0VGM9 PRIDE:Q0VGM9 Ensembl:ENSMUST00000048608
Ensembl:ENSMUST00000054622 Ensembl:ENSMUST00000098971
Ensembl:ENSMUST00000108814 Ensembl:ENSMUST00000108815
Ensembl:ENSMUST00000148252 GeneID:269400 KEGG:mmu:269400
UCSC:uc008olu.2 UCSC:uc008olv.2 UCSC:uc008olw.2 UCSC:uc008olx.2
UCSC:uc012cmk.1 UCSC:uc012cml.1 InParanoid:Q6H1L3 OMA:VLKMQFL
ChiTaRS:RTEL1 NextBio:392832 Bgee:Q0VGM9 Genevestigator:Q0VGM9
Uniprot:Q0VGM9
Length = 1203
Score = 302 (111.4 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 119/422 (28%), Positives = 183/422 (43%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVD-LQV-----------LTSVISTGPDNYPLNASYK 535
P++SF+ E+ + F CLE PH+ID + L V L+S L++ K
Sbjct: 484 PLSSFALEMQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGK 543
Query: 536 TADG---------------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
Y +MEK W+ G ++ A KPLFVEP+ ++ F V
Sbjct: 544 ALSNIARVVPHGLLVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPR--NKGSFSEV 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ S + G E + ++ G RG IV G+P+
Sbjct: 602 IDAYYQQVA--SPASNGATFLAVCRGKAS----EGLDFSDMNG-------RGVIVTGLPY 648
Query: 641 PNINDIQVSLKKKYNDTYRSSKNL----LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D R + LSG EWY QA RA+NQAIGR IRHR DYGAI
Sbjct: 649 PPRMDPRVVLKMQFLDEMRGRSGVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAI 708
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSD 756
L D RF RA + W+R +K YD+F + + FFR + + + + +S
Sbjct: 709 FLCDHRFAYADARAQLPSWVRPYLKVYDNFGHVIRDVAQFFRVAQKTMPLPVPQAVTSSV 768
Query: 757 NDVDHVSSMDQCKEVTKQNTQELNKSD-HSGQNVQSISKYDPFSHQKSQ--GNFEVQT-S 812
++ + ++ D +T++ D H Q +S G +E QT S
Sbjct: 769 SEGE-IALKDATLSSYSLSTRKAMSLDVHVPSLRQKPIGLPAAGDSESSLCGEYEQQTFS 827
Query: 813 LQTDQNN--SCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDS 870
Q + +EY + ++ ++ SS S R E K+L++ G+K V +
Sbjct: 828 AQQRPMGLLAALEYNE-QKAGASEEQALGSSTPSLRCE-KRLSTEQKGGRKKVRLVNHPE 885
Query: 871 FP 872
P
Sbjct: 886 EP 887
Score = 301 (111.0 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 71/202 (35%), Positives = 112/202 (55%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI E + TAYR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVIRELRNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV L++ + DIEDLV G + C YY +R+M A
Sbjct: 167 VASRS--CHFYNNVEA----KFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E I ++ S D+ DV L++ +
Sbjct: 221 IIFMPYNYLLDAKSRKAHSIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEI-I 279
Query: 320 EQVCSVNPMIYQPLIEMTQDLV 341
QV + Q E+ Q+ +
Sbjct: 280 NQVLEEQARVTQQG-ELQQEFI 300
Score = 160 (61.4 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLCSTLAWQ
Sbjct: 6 LNGVTVDFPFQPYPCQQEYMTKVLECLQKK-----VNGILESPTGTGKTLCLLCSTLAWQ 60
Query: 80 QNCK 83
Q+ +
Sbjct: 61 QHLR 64
Score = 128 (50.1 bits), Expect = 1.0e-42, Sum P(4) = 1.0e-42
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P+ ++ V + P++SF+ E+ + F CLE PH+ID + Q+
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKN-QL 511
Query: 517 LTSVISTGPDNYPLNASY 534
++ GPD L+++Y
Sbjct: 512 WVGIVPRGPDGVQLSSAY 529
Score = 59 (25.8 bits), Expect = 9.0e-61, Sum P(4) = 9.0e-61
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 910 CCEASSMPFSNEDPELLLVK-ETPAMDDNNTMAS--PG-SLSKDGNSS-STIFQASTQSP 964
C + +P + +D EL + E+P + T PG S+SK + S I Q P
Sbjct: 1112 CADLMGLPTTGKDLELEGPRDESPTVPPELTHEDLKPGPSMSKKPEKTQSKISSFFRQRP 1171
Query: 965 DQLSVHSQSLT-NPVRVPSSAQPEMVVTPEK 994
D+ SV S T P+++P P ++ P +
Sbjct: 1172 DE-SVRSDDTTPKPMQLPPRL-PHELMKPHR 1200
Score = 48 (22.0 bits), Expect = 1.4e-34, Sum P(4) = 1.4e-34
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFK 212
+P + ASR H + +R+ N K+ +LG R C P+ K
Sbjct: 106 IPKIIYASRTHSQLTQVIRELRNTAYRPKVCVLGSREQLCIHPEVK 151
>TAIR|locus:2016209 [details] [associations]
symbol:AT1G79950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR003822 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
TIGRFAMs:TIGR00604 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11136
OMA:PFPPLKD IPI:IPI00530732 RefSeq:NP_178113.3 UniGene:At.34013
ProteinModelPortal:F4HQE2 SMR:F4HQE2 PRIDE:F4HQE2
EnsemblPlants:AT1G79950.1 GeneID:844335 KEGG:ath:AT1G79950
ArrayExpress:F4HQE2 Uniprot:F4HQE2
Length = 1040
Score = 475 (172.3 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 159/529 (30%), Positives = 242/529 (45%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKEN--IDEECKLLL 201
PTI YASRTHSQ+ QVI E K+++YR M VL SR+ C N+ V + C+ L
Sbjct: 143 PTIVYASRTHSQLRQVIKELKRSSYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLC 202
Query: 202 GDRNLG-CPQFKNVHKVRGH-PSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
R C F + H P + G V DIEDLVN+G+ C YY R + D
Sbjct: 203 KKRGKRQCNHFNRLPDYLKHNPHI---GDEPV-DIEDLVNIGKDSGPCPYYITRELHKDV 258
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMEL 319
++F PY+Y+I+ R ++V+ ++LI DEAHN+E + D+ S D+ VLL +
Sbjct: 259 DIIFAPYNYLISNGYRKFLKVNWTNSVLIFDEAHNLESLCADSASFDLPS-VLLSACISE 317
Query: 320 EQVC--------------SVNP---MIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSC 362
Q C S+NP I + L+ Q+L+ K + KR+ + F
Sbjct: 318 AQECVQLAAARRDSLNDVSINPENFAILKGLLLKLQELIS-----KVPIPKRD-EGFTK- 370
Query: 363 WTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLT 422
G L+ NI+ + P L+ +A A E E + + LE + L
Sbjct: 371 -PGPYIYEMLKSLNITHETAPKLIGTVEEA---AVFLEEEKQRTATNAGSKLEIIADMLK 426
Query: 423 YFFSRNGSHVSD-YQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXX 481
F NGS+ +D Y++ +Q+ + + G + TLS WC +P + D+A+
Sbjct: 427 LIFRENGSNHADVYRVHVQELEQNSTDVMKGKVSRTLSWWCFSPGITMLDIAQKGVGSII 486
Query: 482 XXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLNASYKTADGY 540
PM+S + EL + F LE PHVI + Q+ V+STGP Y LN+SY+ D
Sbjct: 487 LTSGTLSPMDSLAQELKLDFPIRLENPHVISSN-QLWAGVVSTGPSGYVLNSSYRNRDVP 545
Query: 541 KLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKH--YYNSISQGSK-CAXX 597
+ ++L N +SR+ + L P + K+ Y NS++ + C
Sbjct: 546 EYKQELGNA---IVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNSMTVWERICKLK 602
Query: 598 XXXXXXXEGN------NDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ + D + + Q+ A G F AVCRGK+ G+ F
Sbjct: 603 KPVIEPKDSSLFPAAMRDFSE-KLQDRATS-GVVFFAVCRGKVSEGLDF 649
Score = 236 (88.1 bits), Expect = 1.3e-60, Sum P(2) = 1.3e-60
Identities = 48/132 (36%), Positives = 74/132 (56%)
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRS-------SKNLLSGNEWYCNQAFRALNQAI 683
R ++ G+P+ + D +V LK+++ D LLSG+ WY +A RA+NQAI
Sbjct: 655 RAVVITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVNQAI 714
Query: 684 GRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGW 743
GR IRHR DYGAII D+RF++ ++ IS W+R ++K Y + + L FFR +
Sbjct: 715 GRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVISDLARFFRTERSN 774
Query: 744 VGKKMFNGLENS 755
++ EN+
Sbjct: 775 FPARLVTEQENN 786
Score = 201 (75.8 bits), Expect = 6.3e-31, Sum P(2) = 6.3e-31
Identities = 63/214 (29%), Positives = 103/214 (48%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y + GI VEFP++ Y SQ+++M RVI +L CHALLESPTGTGK+L LLC+TLA
Sbjct: 49 YSIRGINVEFPFEAYQSQIIYMDRVIESLQNK-----CHALLESPTGTGKTLCLLCATLA 103
Query: 78 WQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPS-TNGQTAQVAMXXX 136
W+++ + + +S +PL+ GG + P+ + S T+ Q QV +
Sbjct: 104 WRKSLGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQV-IKEL 162
Query: 137 XXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASR--KHYCT--NK---YVRD 189
+ SR +++ ++ + A L + K C N+ Y++
Sbjct: 163 KRSSYRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGKRQCNHFNRLPDYLKH 222
Query: 190 K-----ENIDEECKLLLGDRNLGCPQF--KNVHK 216
E +D E + +G + CP + + +HK
Sbjct: 223 NPHIGDEPVDIEDLVNIGKDSGPCPYYITRELHK 256
Score = 39 (18.8 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 1184 VASNALNFQLLNKILFYLDRLEIRIP 1209
V+ N NF +L +L L L ++P
Sbjct: 335 VSINPENFAILKGLLLKLQELISKVP 360
Score = 37 (18.1 bits), Expect = 8.1e-14, Sum P(2) = 8.1e-14
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 74 STLAWQQNCKLKNQLANISHSKPDTEAVTD 103
S W++ CKLK + S A+ D
Sbjct: 591 SMTVWERICKLKKPVIEPKDSSLFPAAMRD 620
>UNIPROTKB|Q6H1L8 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10096 "Mus spretus" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
GO:GO:0000723 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:AY481613
EMBL:AY481614 EMBL:AY481615 EMBL:AY481616 EMBL:AY481617
EMBL:AY530632 ProteinModelPortal:Q6H1L8 Uniprot:Q6H1L8
Length = 1203
Score = 296 (109.3 bits), Expect = 1.7e-59, Sum P(4) = 1.7e-59
Identities = 71/202 (35%), Positives = 111/202 (54%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ +QVI E + TAYR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQPTQVIRELRNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV L++ + DIEDLV G + C YY +R+M A
Sbjct: 167 VASRS--CHFYNNVEA----KFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E I ++ S D+ DV L++ +
Sbjct: 221 IIFMPYNYLLDAKSRKAHSIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEI-I 279
Query: 320 EQVCSVNPMIYQPLIEMTQDLV 341
QV + Q E+ Q+ +
Sbjct: 280 NQVLEEQARVTQQG-ELQQEFI 300
Score = 295 (108.9 bits), Expect = 1.7e-59, Sum P(4) = 1.7e-59
Identities = 117/422 (27%), Positives = 184/422 (43%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVD-LQV-----------LTSVISTGPDNYPLNASYK 535
P++SF+ E + F CLE PH+ID + L V L+S L++ K
Sbjct: 484 PLSSFALEKQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGK 543
Query: 536 TADG---------------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
Y +MEK W+ G ++ A KPLFVEP+ ++ F V
Sbjct: 544 ALSNIARVVPHGLLVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPR--NKGSFSEV 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ S + G E + ++ G RG IV G+P+
Sbjct: 602 IDAYYQQVA--SPASNGATFLAVCRGKAS----EGLDFSDMNG-------RGVIVTGLPY 648
Query: 641 PNINDIQVSLKKKYNDTYRSSKNL----LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D R + LSG EWY QA RA+NQAIGR IRHR DYGAI
Sbjct: 649 PPRMDPRVVLKMQFLDEMRGRSGVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAI 708
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSD 756
L D RF RA + W+R +K YD+F ++ + F R + + + + +S
Sbjct: 709 FLCDHRFAYADARAQLPSWVRPYLKVYDNFGHAIRDVAQFLRVAQKTMPLPVPQAVTSSV 768
Query: 757 NDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQ---GNFEVQT-S 812
++ + ++ D +T++ D +++ S P + G +E QT S
Sbjct: 769 SEGE-IALKDATLSSYSLSTRKAISLDVHVPSLRQKSIGLPAAGDPESSLCGEYEQQTFS 827
Query: 813 LQTDQNN--SCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDS 870
Q + +EY + ++ ++ SS S R E K+L++ G+K V +
Sbjct: 828 AQQRPMGLLAALEYNE-QKAGASEEQALGSSTPSLRFE-KRLSTEQKGGRKKVRLVNHPE 885
Query: 871 FP 872
P
Sbjct: 886 EP 887
Score = 160 (61.4 bits), Expect = 1.7e-59, Sum P(4) = 1.7e-59
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLCSTLAWQ
Sbjct: 6 LNGVTVDFPFQPYPCQQEYMTKVLECLQKK-----VNGILESPTGTGKTLCLLCSTLAWQ 60
Query: 80 QNCK 83
Q+ +
Sbjct: 61 QHLR 64
Score = 124 (48.7 bits), Expect = 9.2e-42, Sum P(4) = 9.2e-42
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P+ ++ V + P++SF+ E + F CLE PH+ID + Q+
Sbjct: 453 LSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPFPVCLENPHIIDKN-QL 511
Query: 517 LTSVISTGPDNYPLNASY 534
++ GPD L+++Y
Sbjct: 512 WVGIVPRGPDGVQLSSAY 529
Score = 59 (25.8 bits), Expect = 1.7e-59, Sum P(4) = 1.7e-59
Identities = 26/91 (28%), Positives = 42/91 (46%)
Query: 910 CCEASSMPFSNEDPELLLVK-ETPAMDDNNTMAS--PG-SLSKDGNSS-STIFQASTQSP 964
C + +P + +D EL + E+P + T PG S+SK + S I Q P
Sbjct: 1112 CADLMGLPTTGKDLELEGPRDESPTVPPELTHEDLKPGPSMSKKPEKTQSKISSFFRQRP 1171
Query: 965 DQLSVHSQSLT-NPVRVPSSAQPEMVVTPEK 994
D+ SV S T P+++P P ++ P +
Sbjct: 1172 DE-SVRSDDTTPKPMQLPPRL-PHELMKPHR 1200
Score = 48 (22.0 bits), Expect = 8.1e-34, Sum P(4) = 8.1e-34
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC--PQFK 212
+P + ASR H + +R+ N K+ +LG R C P+ K
Sbjct: 106 IPKIIYASRTHSQPTQVIRELRNTAYRPKVCVLGSREQLCIHPEVK 151
>UNIPROTKB|A4K436 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 EMBL:DQ323152 EMBL:DQ323153
EMBL:DQ420360 EMBL:DQ420361 EMBL:DQ420362 EMBL:DQ420363
IPI:IPI00840795 IPI:IPI00905335 IPI:IPI00930023 IPI:IPI00930030
IPI:IPI00930035 RefSeq:NP_001091044.1 UniGene:Bt.6256
ProteinModelPortal:A4K436 GeneID:505721 KEGG:bta:505721 CTD:51750
InParanoid:A4K434 OrthoDB:EOG412M4Q NextBio:20867282 Uniprot:A4K436
Length = 1216
Score = 299 (110.3 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 68/192 (35%), Positives = 111/192 (57%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVISE + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 106 PKIIYASRTHSQLTQVISELRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQVHLCRRK 165
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G + C YY +R++ A
Sbjct: 166 VASRS--CHFYNNVEE----KSLEQELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQAD 219
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E + +A S D+ DV +L + +
Sbjct: 220 IIFMPYNYLLDAKSRRAHGIDLKGTVVIFDEAHNVEKMCEEAASFDLTPHDVASELDV-I 278
Query: 320 EQVCSVNPMIYQ 331
++V + Q
Sbjct: 279 DRVLEERTKVAQ 290
Score = 298 (110.0 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 93/282 (32%), Positives = 128/282 (45%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVISTGPDNYPL----- 530
PM SFS E+ + F CLE PHVI+ D L+S + L
Sbjct: 482 PMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGK 541
Query: 531 ---NASYKTADG-------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
N S G Y +MEK WR +L +KPLFVEP+ S+ F V
Sbjct: 542 VLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPR--SKGGFSEV 599
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
++ +Y ++ + + L+ A+ G RG IV G+P+
Sbjct: 600 MEAFYARVAAPESSGAIFLAVCRGKASEGLDF------ADVNG-------RGVIVTGLPY 646
Query: 641 PNINDIQVSLKKKYNDTYRSSKN----LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D ++ LSG++WY QA RA+NQAIGR IRHR DYGA+
Sbjct: 647 PPRMDPRVLLKMQFLDEMKAQSGAGGQFLSGHDWYRQQASRAVNQAIGRVIRHRHDYGAV 706
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
L D RF RA + W+R +K YDSF + + FFR
Sbjct: 707 FLCDHRFAHADTRAQLPSWVRPHVKVYDSFGHVIRDVAQFFR 748
Score = 159 (61.0 bits), Expect = 6.4e-59, Sum P(3) = 6.4e-59
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
G+ V+FP+QPY Q +M +V+ L + +LESPTGTGK+L LLCSTLAW+++
Sbjct: 8 GVTVDFPFQPYKCQEEYMSKVLECLQEK-----VNGILESPTGTGKTLCLLCSTLAWREH 62
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGGGFIPE 114
+ I+ + E D LA+ G IPE
Sbjct: 63 LRDAVSARRIAE-RASGELFPDRTLASWGNAIPE 95
Score = 121 (47.7 bits), Expect = 1.9e-40, Sum P(3) = 1.9e-40
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P ++ V + PM SFS E+ + F CLE PHVI+ Q+
Sbjct: 451 LSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVINQH-QI 509
Query: 517 LTSVISTGPDNYPLNASY 534
VI GPD L++++
Sbjct: 510 WVGVIPKGPDGAQLSSAF 527
>UNIPROTKB|D4ACH4 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR006935 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF04851 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781945 Ensembl:ENSRNOT00000029336 ArrayExpress:D4ACH4
Uniprot:D4ACH4
Length = 1165
Score = 306 (112.8 bits), Expect = 2.8e-58, Sum P(4) = 2.8e-58
Identities = 93/283 (32%), Positives = 131/283 (46%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVD-LQV-----------LTSVISTGPDNYPLNASYK 535
P++SF+ E+ + F CLE PH+ID + L V L+S L++ K
Sbjct: 484 PLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGK 543
Query: 536 TADG---------------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
Y +MEK W+ G ++ A KPLFVEP+ ++ F V
Sbjct: 544 ALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPR--NKGSFSEV 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC-RGKIVVGIP 639
+ YY ++ G+N + +G F + RG IV G+P
Sbjct: 602 IDAYYQQVAS--------------PGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLP 647
Query: 640 FPNINDIQVSLKKKYNDTYRSSKNL----LSGNEWYCNQAFRALNQAIGRCIRHRFDYGA 695
+P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA
Sbjct: 648 YPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGA 707
Query: 696 IILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
I L D RF RAH+ W+R +K YD+F + + FFR
Sbjct: 708 IFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFR 750
Score = 301 (111.0 bits), Expect = 2.8e-58, Sum P(4) = 2.8e-58
Identities = 70/202 (34%), Positives = 114/202 (56%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G + C YY +R++ A
Sbjct: 167 VASRS--CHFYNNVEE----KSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E I ++ S D+ DV L++ +
Sbjct: 221 IIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEV-I 279
Query: 320 EQVCSVNPMIYQPLIEMTQDLV 341
QV + Q E+ Q+ +
Sbjct: 280 NQVLEEQARVAQHG-ELQQEFI 300
Score = 152 (58.6 bits), Expect = 2.7e-42, Sum P(4) = 2.7e-42
Identities = 53/192 (27%), Positives = 89/192 (46%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P+ ++ V + P++SF+ E+ + F CLE PH+ID + Q+
Sbjct: 453 LSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKN-QL 511
Query: 517 LTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQED 576
VI GPD L+++Y D E L + + G +R+ L P S
Sbjct: 512 WVGVIPRGPDGVQLSSAY---DKRFSEECLSSLGKALGNIARVVPHGLLVFFP---SYPV 565
Query: 577 FEIVLKHYY-NSISQGSKCAXXXXXXXXXEGN-NDLNTIESQENAN--KKGASFLAVCRG 632
E L+ + +S+ + +G+ +++ Q+ A+ GA+FLAVCRG
Sbjct: 566 MEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRG 625
Query: 633 KIVVGIPFPNIN 644
K G+ F ++N
Sbjct: 626 KASEGLDFSDMN 637
Score = 150 (57.9 bits), Expect = 2.8e-58, Sum P(4) = 2.8e-58
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYPCQQEYMTKVLECLQKK-----VNGILESPTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 40 (19.1 bits), Expect = 2.8e-58, Sum P(4) = 2.8e-58
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1067 SH-LSSTPVMDKTLQISCSLCRSPLGLP 1093
SH LS+ M + + SL R P+GLP
Sbjct: 782 SHSLSTRKAMSLDVHVP-SLRRRPVGLP 808
>RGD|1306721 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0000723 "telomere
maintenance" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0010569 "regulation of
double-strand break repair via homologous recombination"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF04851 Pfam:PF06733
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 RGD:1306721 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:CH474066
HOGENOM:HOG000007558 KO:K11136 CTD:51750 OrthoDB:EOG412M4Q
EMBL:BC086436 IPI:IPI00781945 IPI:IPI00782143 RefSeq:NP_001178786.1
UniGene:Rn.98315 PRIDE:Q5RJZ1 GeneID:362288 KEGG:rno:362288
UCSC:RGD:1306721 NextBio:679364 ArrayExpress:Q5RJZ1
Genevestigator:Q5RJZ1 Uniprot:Q5RJZ1
Length = 1274
Score = 306 (112.8 bits), Expect = 4.8e-58, Sum P(4) = 4.8e-58
Identities = 93/283 (32%), Positives = 131/283 (46%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVD-LQV-----------LTSVISTGPDNYPLNASYK 535
P++SF+ E+ + F CLE PH+ID + L V L+S L++ K
Sbjct: 484 PLSSFALEMQIPFPVCLENPHIIDKNQLWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGK 543
Query: 536 TADG---------------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
Y +MEK W+ G ++ A KPLFVEP+ ++ F V
Sbjct: 544 ALGNIARVVPHGLLVFFPSYPVMEKSLEFWQAQGMSKKVEALKPLFVEPR--NKGSFSEV 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVC-RGKIVVGIP 639
+ YY ++ G+N + +G F + RG IV G+P
Sbjct: 602 IDAYYQQVAS--------------PGSNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLP 647
Query: 640 FPNINDIQVSLKKKYNDTYRSSKNL----LSGNEWYCNQAFRALNQAIGRCIRHRFDYGA 695
+P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA
Sbjct: 648 YPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGA 707
Query: 696 IILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
I L D RF RAH+ W+R +K YD+F + + FFR
Sbjct: 708 IFLCDHRFAYADARAHLPSWVRPYLKVYDNFGRVIRDVAQFFR 750
Score = 301 (111.0 bits), Expect = 4.8e-58, Sum P(4) = 4.8e-58
Identities = 70/202 (34%), Positives = 114/202 (56%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVIGELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G + C YY +R++ A
Sbjct: 167 VASRS--CHFYNNVEE----KSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E I ++ S D+ DV L++ +
Sbjct: 221 IIFMPYNYLLDAKSRKAHNIDLKGTVVIFDEAHNVEKICEESASFDLTPRDVASGLEV-I 279
Query: 320 EQVCSVNPMIYQPLIEMTQDLV 341
QV + Q E+ Q+ +
Sbjct: 280 NQVLEEQARVAQHG-ELQQEFI 300
Score = 152 (58.6 bits), Expect = 4.6e-42, Sum P(4) = 4.6e-42
Identities = 53/192 (27%), Positives = 89/192 (46%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P+ ++ V + P++SF+ E+ + F CLE PH+ID + Q+
Sbjct: 453 LSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHIIDKN-QL 511
Query: 517 LTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQED 576
VI GPD L+++Y D E L + + G +R+ L P S
Sbjct: 512 WVGVIPRGPDGVQLSSAY---DKRFSEECLSSLGKALGNIARVVPHGLLVFFP---SYPV 565
Query: 577 FEIVLKHYY-NSISQGSKCAXXXXXXXXXEGN-NDLNTIESQENAN--KKGASFLAVCRG 632
E L+ + +S+ + +G+ +++ Q+ A+ GA+FLAVCRG
Sbjct: 566 MEKSLEFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRG 625
Query: 633 KIVVGIPFPNIN 644
K G+ F ++N
Sbjct: 626 KASEGLDFSDMN 637
Score = 150 (57.9 bits), Expect = 4.8e-58, Sum P(4) = 4.8e-58
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYPCQQEYMTKVLECLQKK-----VNGILESPTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 40 (19.1 bits), Expect = 4.8e-58, Sum P(4) = 4.8e-58
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 1067 SH-LSSTPVMDKTLQISCSLCRSPLGLP 1093
SH LS+ M + + SL R P+GLP
Sbjct: 782 SHSLSTRKAMSLDVHVP-SLRRRPVGLP 808
>UNIPROTKB|B4NDG5 [details] [associations]
symbol:GK24923 "Regulator of telomere elongation helicase 1
homolog" species:7260 "Drosophila willistoni" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH964239 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002071885.1 STRING:B4NDG5 EnsemblMetazoa:FBtr0255574
GeneID:6648559 KEGG:dwi:Dwil_GK24923 FlyBase:FBgn0226882
InParanoid:B4NDG5 Uniprot:B4NDG5
Length = 998
Score = 375 (137.1 bits), Expect = 6.2e-58, Sum P(2) = 6.2e-58
Identities = 110/367 (29%), Positives = 172/367 (46%)
Query: 447 SKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLE 505
S + N ++ WC NP + + P+ +EL + LE
Sbjct: 449 SNSSSSNKAKVINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLE 508
Query: 506 APHVIDVDLQVLTSVISTGPD------NY-----P----------LNASYKTADG----- 539
PH++D QV +I TGPD N+ P LN S DG
Sbjct: 509 NPHIVDQS-QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFF 567
Query: 540 --YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI--SQGSKCA 595
Y ++ K + W+ +G W+ + AKKP+F+EP+G Q F ++ +Y +I S+G+ C
Sbjct: 568 PSYPMLNKCVDAWQTSGLWADIAAKKPIFLEPRGKDQ--FTTTMEEFYQAIRDSKGA-CF 624
Query: 596 XXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYN 655
EG + A++ G R I+ G+P+P + D +V LK++Y
Sbjct: 625 MAVCRGKVSEG---------LDFADRNG-------RAVIITGLPYPPLKDPKVILKRRYL 668
Query: 656 DTYRSSKN-LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISK 714
+ R+ +N LL+G EWY A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SK
Sbjct: 669 EANRTKENQLLTGQEWYNLDATRAVNQAIGRVIRHRHDYGAILLCDSRFQDNSQVQQLSK 728
Query: 715 WLRKSI---KQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEV 771
W+R + Q F + L+ FFR + + M E +D + + ++ + + V
Sbjct: 729 WIRGHLGARPQCSPFGPIVRELRQFFRHAE----ETMEQPKERTDEPL--LKNVYKTEAV 782
Query: 772 TKQNTQE 778
T++N +E
Sbjct: 783 TQENNEE 789
Score = 314 (115.6 bits), Expect = 6.2e-58, Sum P(2) = 6.2e-58
Identities = 72/205 (35%), Positives = 118/205 (57%)
Query: 117 PSTIPPSTNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVL 175
P+ I P G+ A++A+ P + YASRTHSQ++Q + E K++AY + VL
Sbjct: 85 PTGIVP---GEAAELALTVGKANNWGVPKVIYASRTHSQLTQAMRELKRSAYAGMRSVVL 141
Query: 176 ASRKHYCTNKYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVH 232
SR C + V R++ N ++ CK+ + + C V + HP +G +
Sbjct: 142 GSRDQLCIHPEVMREQGNSNKVNMCKMRVHSKT--CSFQLRVESKKDHPDF-RGP--SIM 196
Query: 233 DIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEA 292
DIEDLV VGQ ++ C Y+A++ + +DA + F PY+Y+++P+ R A ++++ I+ILDEA
Sbjct: 197 DIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDPMARKANKIELSNTIVILDEA 256
Query: 293 HNIEDIARDAGSVDI-DEDVLLKLQ 316
HNIE I ++ SV I DV + ++
Sbjct: 257 HNIEKICEESASVQIKSSDVAVAIE 281
Score = 245 (91.3 bits), Expect = 1.1e-50, Sum P(2) = 1.1e-50
Identities = 70/219 (31%), Positives = 109/219 (49%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q FM +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYEVQRAFMEKVIICL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXXXX 139
+ + + Q + +A + G +P G+ A++A+
Sbjct: 61 RTRQSEQQ----KQIRKLQDAANNTKVGPTGIVP------------GEAAELALTVGKAN 104
Query: 140 XXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYV-RDKENIDEE- 196
P + YASRTHSQ++Q + E K++AY + VL SR C + V R++ N ++
Sbjct: 105 NWGVPKVIYASRTHSQLTQAMRELKRSAYAGMRSVVLGSRDQLCIHPEVMREQGNSNKVN 164
Query: 197 -CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDI 234
CK+ + + C V + HP + ++ D+
Sbjct: 165 MCKMRVHSKT--CSFQLRVESKKDHPDFRGPSIMDIEDL 201
>ZFIN|ZDB-GENE-050306-11 [details] [associations]
symbol:rtel1 "regulator of telomere elongation
helicase 1" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-050306-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 CTD:51750 EMBL:BX004876
IPI:IPI01016862 RefSeq:NP_001013328.2 UniGene:Dr.87074
ProteinModelPortal:F1QNW3 Ensembl:ENSDART00000123445 GeneID:503732
KEGG:dre:503732 NextBio:20866277 Bgee:F1QNW3 Uniprot:F1QNW3
Length = 1177
Score = 317 (116.6 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 131/497 (26%), Positives = 205/497 (41%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSV--------ISTG------PDNYP---- 529
P++SF+ E+ + F LE PHVI D ++ + +ST P+N
Sbjct: 483 PLSSFTCEMQIPFPVSLENPHVIQRDQIFVSIIEKGPDGVQLSTAFDRRFVPENMSSMGN 542
Query: 530 --LNASYKTADG-------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
+N S G Y +M+K WR G R+ KP+FVEP+G + F V
Sbjct: 543 TLVNLSRVVPHGLLVFFPSYPVMDKTLEFWRAKGHADRIENVKPMFVEPRG--KGTFTEV 600
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY + + + + L+ A+ G RG ++ G+PF
Sbjct: 601 IDGYYGKVDDPNSSGGSFFAVCRGKASEGLDF------ADTYG-------RGVVITGLPF 647
Query: 641 PNINDIQVSLKKKYNDTYRSSK----NLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK +Y D +K L+G EWY QA RA+NQAIGR IRHR DYGAI
Sbjct: 648 PPRMDPRVVLKMQYLDEMCRNKISGVKYLTGQEWYRQQASRAVNQAIGRVIRHREDYGAI 707
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGW----VGKKMFNGL 752
L D RF+ R + W+R +K YD F + + FFR + V K G
Sbjct: 708 FLCDHRFKSADARNQLPSWVRPYVKIYDGFGTMVRDVAQFFRTAQKTRPVPVKKGKAEGH 767
Query: 753 EN-SDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSIS--KYDPFSHQKSQGNFE- 808
EN +D + + S K V + + K+ +V S+ K D H +G
Sbjct: 768 ENQADTRLLNTGSSCLTKSVWPSDIYQ--KAKTLDAHVPSLKRRKLDSEEHSGREGAARL 825
Query: 809 -VQTSLQTDQNNSCIEYID-LERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSV 866
+Q ++ + +D L+ DK D+ G R + S + ++L
Sbjct: 826 CIQYEMEMTSKRKPVSLLDALDDTTDKEERE-DTMVGEERASHLSTLSLQHD-KRLDD-- 881
Query: 867 KYDSFPGLNLLDEVEVQEFVQLDRVSSCKDYINT--QCSLQKSSRCCEASSMPFSNEDP- 923
+S G + V+ +E V + K ++ +C ++ + + + D
Sbjct: 882 --ESRGGKRKIKVVQERETVTSHTAKTGKAFMMELRRCLSHENFKLIMEALQSYKTADNL 939
Query: 924 -ELLLVKETPAMDDNNT 939
LL P + D+NT
Sbjct: 940 NNLLATVAEPLIQDHNT 956
Score = 309 (113.8 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 66/167 (39%), Positives = 102/167 (61%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYV-RDKEN-IDEE-CKLL 200
P I YASRTHSQ++QV++E K T+YR + VL SR+ C N+ V R + N I C+
Sbjct: 107 PKIIYASRTHSQLTQVVNELKNTSYRPKICVLGSREQLCINQEVMRHESNHIKVHMCRAK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + S K + + D+EDLV G+ R C YY +RS+ A
Sbjct: 167 VSSRS--CIFYNNVDE----KSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQHAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI 307
++F PY+Y+++P R A +++KGA++I DEAHN+E + ++ S D+
Sbjct: 221 VIFMPYNYLLDPKSRRAHNIELKGAVVIFDEAHNVEKMCEESTSFDL 267
Score = 158 (60.7 bits), Expect = 6.2e-42, Sum P(3) = 6.2e-42
Identities = 58/188 (30%), Positives = 85/188 (45%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
GI V+FP+ PY Q +M +VI L + + +LESPTGTGK+L LLCSTLAW+ +
Sbjct: 8 GINVDFPFTPYPCQEDYMSKVIECLQKK-----VNGVLESPTGTGKTLCLLCSTLAWRDH 62
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGGGFIPESQPST----IPP-----STNGQTAQV 131
K I+ E D P+++ G + T IP T+ Q QV
Sbjct: 63 FKDTISARKITERMGGAELFADRPMSSWGTAATDGDTPTYYTDIPKIIYASRTHSQLTQV 122
Query: 132 AMXXXXXXXXMTPTI-FYASRTHSQISQVISEYKKTAYRVPM--AVLASRKHYCTNKYVR 188
P I SR I+Q + ++ +V M A ++SR N
Sbjct: 123 V--NELKNTSYRPKICVLGSREQLCINQEVMRHESNHIKVHMCRAKVSSRSCIFYNNV-- 178
Query: 189 DKENIDEE 196
D+++ D+E
Sbjct: 179 DEKSTDKE 186
Score = 117 (46.2 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 456 HTLSLWCLNPAVVFKDVA-EXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDL 514
+ LS WC +P +++ + P++SF+ E+ + F LE PHVI D
Sbjct: 450 NVLSYWCFSPGFSMQELLRQEVRCIILTSGTLSPLSSFTCEMQIPFPVSLENPHVIQRD- 508
Query: 515 QVLTSVISTGPDNYPLNASY 534
Q+ S+I GPD L+ ++
Sbjct: 509 QIFVSIIEKGPDGVQLSTAF 528
Score = 46 (21.3 bits), Expect = 2.7e-30, Sum P(3) = 2.7e-30
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 170 VPMAVLASRKHYCTNKYVRDKENIDEECKL-LLGDRNLGC 208
+P + ASR H + V + +N K+ +LG R C
Sbjct: 106 IPKIIYASRTHSQLTQVVNELKNTSYRPKICVLGSREQLC 145
Score = 40 (19.1 bits), Expect = 8.2e-29, Sum P(3) = 8.2e-29
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 1071 STPVMDKTLQ 1080
S PVMDKTL+
Sbjct: 561 SYPVMDKTLE 570
>WB|WBGene00001049 [details] [associations]
symbol:dog-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;IMP] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IGI;IMP] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0000003 GO:GO:0004003 GO:GO:0000723
GO:GO:0006289 GO:GO:0043570 eggNOG:COG1199
GeneTree:ENSGT00530000063199 GO:GO:0090329 KO:K15362 EMBL:Z81526
PIR:T21711 RefSeq:NP_493618.1 ProteinModelPortal:O62217 SMR:O62217
STRING:O62217 PaxDb:O62217 EnsemblMetazoa:F33H2.1.1
EnsemblMetazoa:F33H2.1.2 GeneID:173370 KEGG:cel:CELE_F33H2.1
UCSC:F33H2.1 CTD:173370 WormBase:F33H2.1 HOGENOM:HOG000021716
InParanoid:O62217 OMA:EKELDDS NextBio:879367 Uniprot:O62217
Length = 983
Score = 294 (108.6 bits), Expect = 2.8e-56, Sum P(4) = 2.8e-56
Identities = 67/193 (34%), Positives = 111/193 (57%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVRDKENIDEECKLLLGD 203
I+Y +RTH QI+QV+ E+ + Y + +LASR+ C N R +I + CK +
Sbjct: 240 IYYGTRTHKQIAQVVKEFSRLPYAKILKHTILASREQSCINPAARKHADISQYCKEVNSA 299
Query: 204 RNLGC-------PQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVV--RGCSYYAA-R 253
++GC P+F+ +R H L++ G V D+E +V + + C Y++ R
Sbjct: 300 HSIGCSFKSAMKPRFEKALPLRDH--LERNGT-VVFDMEKIVETLAISYPQLCPYFSTNR 356
Query: 254 SMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDE---- 309
+ DA ++FCP+SY+++P+IR + +V I+ +I+ILDEAHNIED R+A S E
Sbjct: 357 ILTQDADIIFCPFSYLVDPLIRNSSDVQIRNSIVILDEAHNIEDTCREAASFSFTEKELD 416
Query: 310 DVLLKLQMELEQV 322
D +L L+++ + V
Sbjct: 417 DSILSLRIKRKAV 429
Score = 270 (100.1 bits), Expect = 2.8e-56, Sum P(4) = 2.8e-56
Identities = 54/126 (42%), Positives = 78/126 (61%)
Query: 622 KGASFLAVCRGKIV--VGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRAL 679
+G F A R ++V VGIP+PN D QV+ KK YND K +L+G+EWY QA+RAL
Sbjct: 844 EGIDF-ADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYRAL 902
Query: 680 NQAIGRCIRHRFDYGAIILLDERFQEERNR-------AHISKWLRKSIKQYDSFDASLEG 732
NQA+GRC+RH+ D+GA++++DER + + A +SKW+R +K Y SF
Sbjct: 903 NQALGRCLRHKNDWGAMLMIDERLERQTGNLVGGASSARVSKWIRAQLKSYPSFKEFNAN 962
Query: 733 LKSFFR 738
+ F +
Sbjct: 963 FREFIQ 968
Score = 117 (46.2 bits), Expect = 2.8e-56, Sum P(4) = 2.8e-56
Identities = 25/83 (30%), Positives = 43/83 (51%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
T+SLWC++PA+ F D PM++ +ELG++F +E VI+ D +
Sbjct: 661 TISLWCMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKD-NI 719
Query: 517 LTSVISTGPDNYPLNASYK-TAD 538
+V+ GP + +Y+ T+D
Sbjct: 720 FAAVLPIGPFGNRIQCTYRNTSD 742
Score = 93 (37.8 bits), Expect = 2.8e-56, Sum P(4) = 2.8e-56
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 22 GIQVEFP--YQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAW 78
G+ V P Y +Q + + R+++ L +Q + L ESPTG+GK+++LL ST AW
Sbjct: 79 GVPVRVPRGLSLYSTQKLMIVRILTALKNSQ-----NVLGESPTGSGKTMALLASTCAW 132
>UNIPROTKB|Q9NZ71 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IMP] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=IMP]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 EMBL:CH471077 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
EMBL:AF217796 GO:GO:0000723 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 EMBL:AL353715 KO:K11136 CTD:51750
OrthoDB:EOG412M4Q EMBL:AF217795 EMBL:AB029011 EMBL:AK000485
EMBL:AK302508 EMBL:AK299332 EMBL:AK304798 EMBL:AL080127
IPI:IPI00219849 IPI:IPI00413900 IPI:IPI00718800 IPI:IPI00745153
IPI:IPI00929254 IPI:IPI00929311 IPI:IPI00929712 IPI:IPI00929751
PIR:T12516 PIR:T45294 RefSeq:NP_057518.1 RefSeq:NP_116575.3
UniGene:Hs.434878 ProteinModelPortal:Q9NZ71 SMR:Q9NZ71
IntAct:Q9NZ71 STRING:Q9NZ71 PhosphoSite:Q9NZ71 DMDM:229462743
PaxDb:Q9NZ71 PRIDE:Q9NZ71 GeneID:51750 KEGG:hsa:51750
UCSC:uc002yfu.2 UCSC:uc002yfx.1 UCSC:uc011abd.2 UCSC:uc021wge.1
GeneCards:GC20P062289 HGNC:HGNC:15888 MIM:608833 neXtProt:NX_Q9NZ71
PharmGKB:PA134915625 HOVERGEN:HBG108423 InParanoid:Q9NZ71
GenomeRNAi:51750 NextBio:55835 ArrayExpress:Q9NZ71 Bgee:Q9NZ71
Genevestigator:Q9NZ71 GermOnline:ENSG00000026036 Uniprot:Q9NZ71
Length = 1219
Score = 298 (110.0 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
Identities = 66/183 (36%), Positives = 108/183 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G R C YY +R++ A
Sbjct: 167 VASRS--CHFYNNVEE----KSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E + ++ S D+ D+ L + +
Sbjct: 221 IIFMPYNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDV-I 279
Query: 320 EQV 322
+QV
Sbjct: 280 DQV 282
Score = 282 (104.3 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
Identities = 90/282 (31%), Positives = 124/282 (43%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVI----------STGP 525
P++SF+ E+ + F CLE PH+ID D L+S S G
Sbjct: 484 PVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGK 543
Query: 526 --DNYPLNASYKTA---DGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
N Y Y +MEK WR ++ A KPLFVEP+ S+ F
Sbjct: 544 ALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR--SKGSFSET 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ + + L+ S N RG IV G+P+
Sbjct: 602 ISAYYARVAAPGSTGATFLAVCRGKASEGLDF--SDTNG-----------RGVIVTGLPY 648
Query: 641 PNINDIQVSLKKKYNDTYR----SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA+
Sbjct: 649 PPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAV 708
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
L D RF RA + W+R ++ YD+F + + FFR
Sbjct: 709 FLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVAQFFR 750
Score = 149 (57.5 bits), Expect = 4.4e-56, Sum P(3) = 4.4e-56
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYKCQQEYMTKVLECLQQK-----VNGILESPTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 117 (46.2 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P + V + P++SF+ E+ + F CLE PH+ID Q+
Sbjct: 453 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKH-QI 511
Query: 517 LTSVISTGPDNYPLNASY 534
V+ GPD L++++
Sbjct: 512 WVGVVPRGPDGAQLSSAF 529
Score = 38 (18.4 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 510 IDVDLQVLTSVISTGPDNYPL 530
+D L VL ++ + P+++PL
Sbjct: 1092 LDKVLAVLAALTTAKPEDFPL 1112
>UNIPROTKB|F6WH68 [details] [associations]
symbol:RTEL1 "Protein RTEL1-TNFRSF6B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 EMBL:AL121845
TIGRFAMs:TIGR00604 EMBL:AL353715 HGNC:HGNC:15888 OMA:VLKMQFL
HGNC:HGNC:44095 IPI:IPI01021192 SMR:F6WH68 Ensembl:ENST00000318100
Ensembl:ENST00000482936 Uniprot:F6WH68
Length = 1400
Score = 298 (110.0 bits), Expect = 8.0e-56, Sum P(3) = 8.0e-56
Identities = 66/183 (36%), Positives = 108/183 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G R C YY +R++ A
Sbjct: 167 VASRS--CHFYNNVEE----KSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E + ++ S D+ D+ L + +
Sbjct: 221 IIFMPYNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDV-I 279
Query: 320 EQV 322
+QV
Sbjct: 280 DQV 282
Score = 282 (104.3 bits), Expect = 8.0e-56, Sum P(3) = 8.0e-56
Identities = 90/282 (31%), Positives = 124/282 (43%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVI----------STGP 525
P++SF+ E+ + F CLE PH+ID D L+S S G
Sbjct: 484 PVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGK 543
Query: 526 --DNYPLNASYKTA---DGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
N Y Y +MEK WR ++ A KPLFVEP+ S+ F
Sbjct: 544 ALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR--SKGSFSET 601
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ + + L+ S N RG IV G+P+
Sbjct: 602 ISAYYARVAAPGSTGATFLAVCRGKASEGLDF--SDTNG-----------RGVIVTGLPY 648
Query: 641 PNINDIQVSLKKKYNDTYR----SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA+
Sbjct: 649 PPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAV 708
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
L D RF RA + W+R ++ YD+F + + FFR
Sbjct: 709 FLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVAQFFR 750
Score = 149 (57.5 bits), Expect = 8.0e-56, Sum P(3) = 8.0e-56
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYKCQQEYMTKVLECLQQK-----VNGILESPTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 117 (46.2 bits), Expect = 1.3e-38, Sum P(3) = 1.3e-38
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P + V + P++SF+ E+ + F CLE PH+ID Q+
Sbjct: 453 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKH-QI 511
Query: 517 LTSVISTGPDNYPLNASY 534
V+ GPD L++++
Sbjct: 512 WVGVVPRGPDGAQLSSAF 529
Score = 38 (18.4 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 510 IDVDLQVLTSVISTGPDNYPL 530
+D L VL ++ + P+++PL
Sbjct: 1092 LDKVLAVLAALTTAKPEDFPL 1112
>UNIPROTKB|B4JNS2 [details] [associations]
symbol:GH24089 "Regulator of telomere elongation helicase 1
homolog" species:7222 "Drosophila grimshawi" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH916371 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 RefSeq:XP_001992658.1 EnsemblMetazoa:FBtr0159503
GeneID:6565576 KEGG:dgr:Dgri_GH24089 FlyBase:FBgn0131545
InParanoid:B4JNS2 Uniprot:B4JNS2
Length = 986
Score = 370 (135.3 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 124/453 (27%), Positives = 208/453 (45%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH+++ + QV
Sbjct: 455 INFWCFNPGFGMEQLLNTHVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVN-EAQV 513
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN S DG Y ++ + +
Sbjct: 514 YVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQCVD 573
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI--SQGSKCAXXXXXXXXXEG 606
W+ +G W+ ++++KP+F+EP+G Q F ++ +Y +I S+G+ C EG
Sbjct: 574 AWQASGLWADISSRKPIFLEPRGKDQ--FTSTMEEFYQAIRDSKGA-CFMAVCRGKVSEG 630
Query: 607 NNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LL 665
+ A++ G R I+ G+PFP + D +V LK++Y +T R+ +N LL
Sbjct: 631 ---------LDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLETNRTRENQLL 674
Query: 666 SGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQ 722
SGNEWY +A RA+NQAIGR IRHR DYGAI+L D RFQ+ +SKW+R + Q
Sbjct: 675 SGNEWYNLEATRAVNQAIGRVIRHRNDYGAILLCDARFQDASQVQQLSKWIRNHLGARPQ 734
Query: 723 YDSFDASLEGLKSFFRDVKGWVGKKMFNGLE-------NSDNDVDHVSSMDQCK-EVTKQ 774
F + L+ FF+ + + + + +E + D ++ + Q K E
Sbjct: 735 SSPFGPIVRELRQFFKHAEQTIVQPVERAVEPVLHTICSKKEDQLTLAPITQIKREPGNT 794
Query: 775 NTQELNKSDHSGQNVQ---SISKYDPFSHQKSQGNFEVQTSLQTDQNNSCIEYIDLERMN 831
T + + V+ SI + P + + G + Q+ + + +++ + R+N
Sbjct: 795 GTSKFQLASELAAKVEMANSIKTWTPADYANAAGR-----NAQSPKAPNPMDF--MSRLN 847
Query: 832 DKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHS 864
N SID + S R + K++ + S H+
Sbjct: 848 S-NVTSIDFNADSGR-DLVKIHKRERSSPTFHN 878
Score = 297 (109.6 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 67/178 (37%), Positives = 106/178 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTNKYV-RDKENIDEE--CKL 199
P + YASRTHSQ++Q + E K+TAY + VL SR C + V R++ N ++ CKL
Sbjct: 109 PKVIYASRTHSQLTQAMRELKRTAYANMRAVVLGSRDQLCIHPDVMREQGNSNKVNMCKL 168
Query: 200 LLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
+ ++ C V + HP +G + DIEDLV VGQ ++ C Y+A++ + + A
Sbjct: 169 KVHAKS--CTFQLRVESKKDHPDF-RGP--SIMDIEDLVKVGQRLKMCPYFASKELVNSA 223
Query: 260 QLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
+ F PY+Y+++P R A ++++ AI+ILDE HNIE I ++ SV I DV + ++
Sbjct: 224 DITFMPYNYLLDPKARKANKIELSNAIVILDEGHNIEKICEESASVQIRSSDVAIAIE 281
Score = 242 (90.2 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 73/219 (33%), Positives = 108/219 (49%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLCSTL W
Sbjct: 6 IAGIPVHFPFEPYDVQRAYMEKVIICL----RDG-TNGVLESPTGTGKTLSLLCSTLGWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXXXX 139
+ + + QL N+ + D + A G + + I S N
Sbjct: 61 RTRQSEVQL-NMQKLQHDQQTQLTGAAGAGAAMGSEIAAVIGKSNNWGV----------- 108
Query: 140 XXMTPTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTNKYV-RDKENIDEE- 196
P + YASRTHSQ++Q + E K+TAY + VL SR C + V R++ N ++
Sbjct: 109 ----PKVIYASRTHSQLTQAMRELKRTAYANMRAVVLGSRDQLCIHPDVMREQGNSNKVN 164
Query: 197 -CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDI 234
CKL + ++ C V + HP + ++ D+
Sbjct: 165 MCKLKVHAKS--CTFQLRVESKKDHPDFRGPSIMDIEDL 201
Score = 49 (22.3 bits), Expect = 1.1e-21, Sum P(3) = 1.1e-21
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 613 IESQENANKKGASFLAVCRGKIVVGIPFPNINDI--QVSLKKKYNDTYRSSKNLLSGNE 669
+ SQ + +KG SF+ + ++ I F N DI +VS K + SK + N+
Sbjct: 376 VASQHSMLRKGGSFMVLAD---LLNIVFANKGDIMSKVSCSFKVHAEIEESKQSQTNNK 431
Score = 48 (22.0 bits), Expect = 1.9e-55, Sum P(3) = 1.9e-55
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 1032 DLMLMASREANRRIEFNSETNYVKNKSKTSNNCAESHLSSTP 1073
DL+ + RE + F++E+ K + + NN A+S L P
Sbjct: 862 DLVKIHKRERSSPT-FHNESMGSKKRYRLINNIAQSELKEAP 902
>UNIPROTKB|Q5RE34 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9601 "Pongo abelii" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136 CTD:51750 EMBL:CR857704
RefSeq:NP_001124929.1 UniGene:Pab.2365 ProteinModelPortal:Q5RE34
GeneID:100171800 KEGG:pon:100171800 Uniprot:Q5RE34
Length = 1302
Score = 299 (110.3 bits), Expect = 2.5e-55, Sum P(3) = 2.5e-55
Identities = 70/204 (34%), Positives = 113/204 (55%)
Query: 123 STNGQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYC 182
S+ G A A P I YASRTHSQ++QVI+E + T+YR + VL SR+ C
Sbjct: 87 SSWGNAAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINELRNTSYRPKVCVLGSREQLC 146
Query: 183 TNKYVRDKENIDEE---CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVN 239
+ V+ +E+ + C+ + R+ C + NV + SL++ + DIEDLV
Sbjct: 147 IHPEVKKQESNHIQIHLCRKKVASRS--CHFYNNVEE----KSLEQELASPILDIEDLVK 200
Query: 240 VGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIA 299
G R C YY +R++ A ++F PY+Y+++ R A +D+KG ++I DEAHN+E +
Sbjct: 201 SGSKHRVCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMC 260
Query: 300 RDAGSVDID-EDVLLKLQMELEQV 322
++ S D+ D+ L + ++QV
Sbjct: 261 EESASFDLTPHDLASGLDI-IDQV 283
Score = 284 (105.0 bits), Expect = 2.5e-55, Sum P(3) = 2.5e-55
Identities = 90/282 (31%), Positives = 126/282 (44%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVISTGPDNYPLNASYK 535
P++SF+ E+ + F CLE PH+ID D L+S L++ K
Sbjct: 485 PVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGK 544
Query: 536 ----TA-----------DGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
TA Y +MEK WR ++ A KPLFVEP+ S+ F
Sbjct: 545 ALGNTARVVPCGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR--SKGSFSET 602
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ + + L+ S N RG IV G+P+
Sbjct: 603 ISAYYARVAAPGSTGATFLAVCRGKASEGLDF--SDTNG-----------RGVIVTGLPY 649
Query: 641 PNINDIQVSLKKKYNDTYR----SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA+
Sbjct: 650 PPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAV 709
Query: 697 ILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFR 738
L D RF RA + W+R ++ YD+F + + FFR
Sbjct: 710 FLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVAQFFR 751
Score = 140 (54.3 bits), Expect = 2.5e-55, Sum P(3) = 2.5e-55
Identities = 27/64 (42%), Positives = 43/64 (67%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LES TGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYKCQQEYMTKVLECLQQK-----VNGILESHTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 124 (48.7 bits), Expect = 1.2e-38, Sum P(3) = 1.2e-38
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P + ++ V + P++SF+ E+ + F CLE PH+ID Q+
Sbjct: 454 LSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKH-QI 512
Query: 517 LTSVISTGPDNYPLNASY 534
V+ GPD L++++
Sbjct: 513 WVGVVPRGPDGAQLSSAF 530
Score = 38 (18.4 bits), Expect = 1.0e-29, Sum P(3) = 1.0e-29
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 510 IDVDLQVLTSVISTGPDNYPL 530
+D L VL ++ + P+++PL
Sbjct: 1094 LDKVLAVLAALTTAKPEDFPL 1114
>UNIPROTKB|B4I0K4 [details] [associations]
symbol:GM12432 "Regulator of telomere elongation helicase 1
homolog" species:7238 "Drosophila sechellia" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH480819 GO:GO:0010569
TIGRFAMs:TIGR00604 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_002036876.1 EnsemblMetazoa:FBtr0195417 GeneID:6612367
KEGG:dse:Dsec_GM12432 FlyBase:FBgn0167369 Uniprot:B4I0K4
Length = 966
Score = 356 (130.4 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 110/388 (28%), Positives = 180/388 (46%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
++ WC NP + + P+ +EL + LE PH++D QV
Sbjct: 435 INFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIVDQS-QV 493
Query: 517 LTSVISTGPD------NY-----P----------LNASYKTADG-------YKLMEKLCN 548
+I TGPD NY P LN + DG Y ++ K +
Sbjct: 494 YVKIIGTGPDRQQLISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLNKCVD 553
Query: 549 RWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNN 608
W+ +G W+ ++ KKP+F+EP+ S++ F ++ +Y +I + SK A G
Sbjct: 554 AWQASGLWADISCKKPIFLEPR--SKDQFTSTMEEFYQAI-RDSKGAVFMAVC---RGK- 606
Query: 609 DLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKN-LLSG 667
E + A++ G R I+ G+PFP + D +V LK++Y + R+ +N LLSG
Sbjct: 607 ---VSEGLDFADRNG-------RAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSG 656
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI---KQYD 724
EWY A RA+NQAIGR IRHR DYGAI+L D RF++ +SKW+R + Q
Sbjct: 657 QEWYNLDATRAVNQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGDRPQCS 716
Query: 725 SFDASLEGLKSFFRDVKGWVG----KKMFNGLEN-SDNDVDHVSSMDQCKEVTKQNT--Q 777
F + L+ FF++ + + ++ + LE +V+ ++++ + K N +
Sbjct: 717 PFGPIVRELRQFFKNAEANMKLPDERETDSPLETVCKTEVEPLAAIPKVKREPGSNATFK 776
Query: 778 ELNKSDHSGQNVQSISKYDPFSHQKSQG 805
N+S + SI + P + + G
Sbjct: 777 SANESAIKVEMANSIKTWTPADYASAAG 804
Score = 181 (68.8 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 60/183 (32%), Positives = 89/183 (48%)
Query: 126 GQTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAY-RVPMAVLASRKHYCTN 184
G +++A P + YASRTHSQ++Q + E K+TAY + VL SR C +
Sbjct: 89 GDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIH 148
Query: 185 KYV-RDKENIDEE--CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVG 241
V R+ N ++ CKL + + C V + HP L +G + DIEDLV VG
Sbjct: 149 PEVMRELGNSNKTNMCKLRVHSKT--CSFQMRVESRKDHPDL-RGPT--IMDIEDLVKVG 203
Query: 242 QVVRGCSYYAARSMA--DDAQL----VFCPYSYIINPVIRGAMEVDIKGAILILDEAHNI 295
Q ++ C Y+A+R +A + +L V ++ I + V IK + D A I
Sbjct: 204 QRLKICPYFASRELARANKIELGNTIVILDEAHNIEKICEEYASVQIKSS----DVAMTI 259
Query: 296 EDI 298
EDI
Sbjct: 260 EDI 262
Score = 166 (63.5 bits), Expect = 3.6e-54, Sum P(3) = 3.6e-54
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ GI V FP++PY Q +M +VI L RDG + +LESPTGTGK+LSLLCS+LAW
Sbjct: 6 IAGIPVHFPFEPYPVQRAYMEKVIHCL----RDG-TNGVLESPTGTGKTLSLLCSSLAWI 60
Query: 80 QNCKLKNQLANISHSKPDTEAV 101
+ + ++Q+ + K D +
Sbjct: 61 RTRQSEHQMQMVKMEKADFSGI 82
Score = 93 (37.8 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 49/177 (27%), Positives = 77/177 (43%)
Query: 160 ISEYKKTAYR-----VPMAVLASRKHYCTNKYVRD-KENIDEECK-LLLGDRNLGC--PQ 210
+SE KT R VP + ASR H + +R+ K + ++LG R+ C P+
Sbjct: 91 LSELAKTMGRANNWGVPKVIYASRTHSQLTQAMRELKRTAYANMRSVVLGSRDQLCIHPE 150
Query: 211 FK---------NVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ- 260
N+ K+R H C +E + + RG + + Q
Sbjct: 151 VMRELGNSNKTNMCKLRVHSKT----CSFQMRVESRKDHPDL-RGPTIMDIEDLVKVGQR 205
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
L CPY + + R A ++++ I+ILDEAHNIE I + SV I DV + ++
Sbjct: 206 LKICPY-FASRELAR-ANKIELGNTIVILDEAHNIEKICEEYASVQIKSSDVAMTIE 260
>UNIPROTKB|Q7QEI1 [details] [associations]
symbol:AGAP000634 "Regulator of telomere elongation
helicase 1 homolog" species:7165 "Anopheles gambiae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:AAAB01008847 HOGENOM:HOG000007558 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_311162.5 GeneID:1272449 KEGG:aga:AgaP_AGAP000634
VectorBase:AGAP000634 CTD:1272449 PhylomeDB:Q7QEI1 Uniprot:Q7QEI1
Length = 991
Score = 366 (133.9 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 100/328 (30%), Positives = 152/328 (46%)
Query: 444 KRDSKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXX-XPMNSFSSELGVQFGT 502
K+ K P + + ++ WC NP + + + P+ F SEL +
Sbjct: 441 KQPLKAPVKSTSKVINFWCFNPGFGMRQLVDSGTRSIILTSGTLAPLKPFISELSLPVAV 500
Query: 503 CLEAPHVIDVDLQVLTSVISTGPDNYPLNASYK-------------TA------------ 537
LE PH+I QV VI+ GPD LN+S+K TA
Sbjct: 501 SLENPHII-ARSQVYVKVITHGPDRVELNSSFKNRSNPEYIASLGRTALSLCPIIPGGLL 559
Query: 538 ---DGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKC 594
Y L+ K W+ +G W +++ K +FVEP+G Q F + YY + +
Sbjct: 560 IFFPSYPLLNKCSEEWQASGIWGQISRLKQIFVEPRGKDQ--FTTTMAEYYAQVRDPA-- 615
Query: 595 AXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY 654
+ G E + A+ G R ++ G+PFP + D +V LKK+Y
Sbjct: 616 SRGAIFMAVCRGK----VSEGLDFADANG-------RAVMITGLPFPPMMDARVVLKKQY 664
Query: 655 NDTYRSSKN-LLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHIS 713
DT R+ +N L++GN+WY +A RA+NQAIGR IRH+ DYGAI+L D RFQ R +A +S
Sbjct: 665 LDTNRTRENELITGNDWYSLEASRAVNQAIGRVIRHKDDYGAILLCDSRFQNARQQAQLS 724
Query: 714 KWLRKSIKQYDS---FDASLEGLKSFFR 738
W+ +++ + F + + FFR
Sbjct: 725 AWIHSHLRESSAVPNFGTVVGEMSRFFR 752
Score = 271 (100.5 bits), Expect = 1.9e-52, Sum P(2) = 1.9e-52
Identities = 59/176 (33%), Positives = 98/176 (55%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEE---CKLLL 201
I YASRTHSQ+SQ + E K T+Y V +L SR C + + +EN + C+ +
Sbjct: 111 IIYASRTHSQLSQAMQELKNTSYLFVRSIILGSRDQLCIHPDISKQENNAIKTVLCRESV 170
Query: 202 GDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQL 261
RN C + V + P + V DIEDLV VG+ ++ C YY ++ + + A +
Sbjct: 171 KARN--CSFYNRVETAKDRPDV---ATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADV 225
Query: 262 VFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDI-DEDVLLKLQ 316
+F PY+Y+++P R + + ++ ++ILDEAHN+E + + GS + D+ L ++
Sbjct: 226 IFMPYNYLLDPKARKSNGLSLQNTVIILDEAHNVEKMCEEVGSALLRSSDIALAIE 281
Score = 222 (83.2 bits), Expect = 2.7e-47, Sum P(2) = 2.7e-47
Identities = 67/221 (30%), Positives = 105/221 (47%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y + GI V FP++PY Q +M +VI L + +G +LESPTGTGK+LSLLCS++A
Sbjct: 4 YMINGIPVNFPFEPYELQKNYMAKVIECLQN-KTNG----VLESPTGTGKTLSLLCSSMA 58
Query: 78 WQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXX 137
W + K K H + + +P + ++ + + P +A+
Sbjct: 59 WLLHMKSKQP----KHRMETIDTLPEPPE-----LSNAKHAALDPEQ-----ALALQQQK 104
Query: 138 XXXXMTPTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRDKENIDEE 196
M I YASRTHSQ+SQ + E K T+Y V +L SR C + + +EN +
Sbjct: 105 ANAKMK--IIYASRTHSQLSQAMQELKNTSYLFVRSIILGSRDQLCIHPDISKQENNAIK 162
Query: 197 ---CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDI 234
C+ + RN C + V + P + ++ D+
Sbjct: 163 TVLCRESVKARN--CSFYNRVETAKDRPDVATVPVMDIEDL 201
Score = 59 (25.8 bits), Expect = 6.5e-20, Sum P(2) = 6.5e-20
Identities = 48/222 (21%), Positives = 87/222 (39%)
Query: 823 EYIDLERMNDK-----NN-HSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNL 876
+Y+D R + N+ +S+++S+ + + + D+ G L ++ N
Sbjct: 663 QYLDTNRTRENELITGNDWYSLEASRAVNQAIGRVIRHKDDYGAILLCDSRFQ-----NA 717
Query: 877 LDEVEVQEFVQLD-RVSSCKDYINTQCS-LQKSSRCCEASSMPFSNEDPELLLVKETPA- 933
+ ++ ++ R SS T + + R +S+P D + VK+ PA
Sbjct: 718 RQQAQLSAWIHSHLRESSAVPNFGTVVGEMSRFFRHMSTASLPARVRD--VCAVKDEPAE 775
Query: 934 --MDDNNTMASPGSLSKDG--NSSSTIFQASTQSPDQLSV--HSQSLTNPVRVPSSAQPE 987
++ + K G N+ + F+ S PD + V HS+S T + A
Sbjct: 776 AAKEEPGKGKRFATAVKGGGINTFAEKFRLSEYLPDSMKVNPHSRS-TKSAGDDAEAGGS 834
Query: 988 MVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSP 1029
+VT K D PP S T+KRRK ++ P
Sbjct: 835 GLVTLYKRERNDGKGPPP------SPGAFEATRKRRKIVIVP 870
Score = 41 (19.5 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1252 GWRSTKSKLRLPKK 1265
GW +TK L+ P K
Sbjct: 436 GWTATKQPLKAPVK 449
>UNIPROTKB|D6RA96 [details] [associations]
symbol:RTEL1-TNFRSF6B "Protein RTEL1-TNFRSF6B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AL121845 EMBL:AL353715
HOGENOM:HOG000007558 ProteinModelPortal:D6RA96 SMR:D6RA96
Ensembl:ENST00000492259 HGNC:HGNC:44095 ArrayExpress:D6RA96
Bgee:D6RA96 Uniprot:D6RA96
Length = 785
Score = 298 (110.0 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 66/183 (36%), Positives = 108/183 (59%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRDKENIDEE---CKLL 200
P I YASRTHSQ++QVI+E + T+YR + VL SR+ C + V+ +E+ + C+
Sbjct: 107 PKIIYASRTHSQLTQVINELRNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKK 166
Query: 201 LGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQ 260
+ R+ C + NV + SL++ + DIEDLV G R C YY +R++ A
Sbjct: 167 VASRS--CHFYNNVEE----KSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQAD 220
Query: 261 LVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID-EDVLLKLQMEL 319
++F PY+Y+++ R A +D+KG ++I DEAHN+E + ++ S D+ D+ L + +
Sbjct: 221 IIFMPYNYLLDAKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDV-I 279
Query: 320 EQV 322
+QV
Sbjct: 280 DQV 282
Score = 227 (85.0 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 80/248 (32%), Positives = 107/248 (43%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVI----------STGP 525
P++SF+ E+ + F CLE PH+ID D L+S S G
Sbjct: 512 PVSSFALEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGK 571
Query: 526 --DNYPLNASYKTA---DGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
N Y Y +MEK WR ++ A KPLFVEP+ S+ F
Sbjct: 572 ALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPR--SKGSFSET 629
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
+ YY ++ + + L+ S N RG IV G+P+
Sbjct: 630 ISAYYARVAAPGSTGATFLAVCRGKASEGLDF--SDTNG-----------RGVIVTGLPY 676
Query: 641 PNINDIQVSLKKKYNDTYR----SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAI 696
P D +V LK ++ D + + LSG EWY QA RA+NQAIGR IRHR DYGA+
Sbjct: 677 PPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAV 736
Query: 697 ILLDERFQ 704
L D R Q
Sbjct: 737 FLCDHRCQ 744
Score = 149 (57.5 bits), Expect = 2.6e-51, Sum P(3) = 2.6e-51
Identities = 28/64 (43%), Positives = 44/64 (68%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+ G+ V+FP+QPY Q +M +V+ L + + +LESPTGTGK+L LLC+TLAW+
Sbjct: 6 LNGVTVDFPFQPYKCQQEYMTKVLECLQQK-----VNGILESPTGTGKTLCLLCTTLAWR 60
Query: 80 QNCK 83
++ +
Sbjct: 61 EHLR 64
Score = 117 (46.2 bits), Expect = 7.6e-40, Sum P(3) = 7.6e-40
Identities = 24/78 (30%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P + V + P++SF+ E+ + F CLE PH+ID Q+
Sbjct: 481 LSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHIIDKH-QI 539
Query: 517 LTSVISTGPDNYPLNASY 534
V+ GPD L++++
Sbjct: 540 WVGVVPRGPDGAQLSSAF 557
>POMBASE|SPAC3G6.11 [details] [associations]
symbol:chl1 "ATP-dependent DNA helicase Chl1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006342
"chromatin silencing" evidence=NAS] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 PomBase:SPAC3G6.11 INTERPRO:IPR013020 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0006342 GO:GO:0007064
GO:GO:0045910 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 PIR:T38730 RefSeq:NP_594977.1
ProteinModelPortal:O14147 STRING:O14147 EnsemblFungi:SPAC3G6.11.1
GeneID:2543118 KEGG:spo:SPAC3G6.11 HOGENOM:HOG000241266 OMA:NLGRCVV
OrthoDB:EOG408RH6 NextBio:20804145 Uniprot:O14147
Length = 844
Score = 251 (93.4 bits), Expect = 3.5e-44, Sum P(4) = 3.5e-44
Identities = 67/206 (32%), Positives = 97/206 (47%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG-SKCAXXX 598
+ +++ W G +RLNAKKPLF+E K + +HY S+ G S
Sbjct: 653 FAFLQQAVKVWEMNGITNRLNAKKPLFIESKDFGDNPLD-TFEHYKQSVDAGLSGMLFSV 711
Query: 599 XXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY 658
EG N ++K G R +VVG+PFPN D++ K Y +
Sbjct: 712 IGGRLSEGINF---------SDKLG-------RAVMVVGMPFPNSQDVEWQAKVSYVEEK 755
Query: 659 RSSKNL---LSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKW 715
K + + E+Y N RA+NQ+IGR IRHR DY +IILLD R+ + + W
Sbjct: 756 AKEKGINAKQASQEFYENTCMRAVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRKLPNW 815
Query: 716 LRKSIKQYDSFDASLEGLKSFFRDVK 741
L K+I +F ++ L +FFR K
Sbjct: 816 LSKNIHSSPNFGPAIRQLATFFRAKK 841
Score = 235 (87.8 bits), Expect = 3.5e-44, Sum P(4) = 3.5e-44
Identities = 59/183 (32%), Positives = 97/183 (53%)
Query: 146 IFYASRTHSQISQVISEYKKT---AYRVPMAV--LASRKHYCTNKYVRD---KENIDEEC 197
I++ SRTHSQ+ Q++ E KK + P+ V LASRK+ C N VR ++E+C
Sbjct: 214 IYFTSRTHSQLQQLVQEIKKLNNQTFSTPIRVVSLASRKNLCINNEVRKLRPTSALNEKC 273
Query: 198 KLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMAD 257
L G + CP ++ ++ + E+ DIE+LV +GQ ++ C YY R D
Sbjct: 274 IELQGSAHK-CPFLQDNTQLW---DFRDEALAEIMDIEELVELGQRLKVCPYYGTREAVD 329
Query: 258 DAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDI--ARDAGSVDIDEDVLLKL 315
AQ+V PY ++ R A+ + +K I I+DEAHN+ D + + S+ + + +
Sbjct: 330 SAQIVTLPYPLLLQESARNALNLTLKDNICIIDEAHNLIDAICSMHSSSISFRQVCIAET 389
Query: 316 QME 318
Q++
Sbjct: 390 QLQ 392
Score = 120 (47.3 bits), Expect = 3.5e-44, Sum P(4) = 3.5e-44
Identities = 26/51 (50%), Positives = 33/51 (64%)
Query: 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAW 78
PY PY QL FM + S++ DG + ESPTGTGKSLSL+C++L W
Sbjct: 16 PYTPYDIQLEFMRSLYSSIS----DGKI-GIFESPTGTGKSLSLICASLTW 61
Score = 50 (22.7 bits), Expect = 3.5e-44, Sum P(4) = 3.5e-44
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 508 HVIDVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKL 546
H++ + + T ++S GP P ++K D L++ L
Sbjct: 594 HIVPPE-NITTILVSQGPAGVPFEFTHKRKDDENLLKDL 631
>UNIPROTKB|A8WS58 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6238 "Caenorhabditis briggsae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 EMBL:HE601486 RefSeq:XP_002639805.1
EnsemblMetazoa:CBG02256 GeneID:8581799 KEGG:cbr:CBG02256
CTD:8581799 WormBase:CBG02256 HOGENOM:HOG000154218 OMA:ENDIENQ
Uniprot:A8WS58
Length = 994
Score = 303 (111.7 bits), Expect = 5.4e-44, Sum P(3) = 5.4e-44
Identities = 68/187 (36%), Positives = 110/187 (58%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRD-KENIDEE--CKL 199
PTIFYASRTHSQ+ QV+ E +T Y+ V +L SR+H+C N+ V+ KE+ + C+
Sbjct: 103 PTIFYASRTHSQLEQVVHELNRTEYKWVKTTILGSREHFCINQKVKKIKESNRQAHVCRG 162
Query: 200 LLGDRNLGC-PQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADD 258
L+ R+ +F + + + L+KG E DIED V +G C Y+ +R ++
Sbjct: 163 LVSKRSCHYYNKFDALTTDKANEILEKG---EAMDIEDFVKIGTQNSICPYFMSRQRSET 219
Query: 259 AQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
A+L+ PY+YII+P +R ++D+K +I+I DEAHN+E I S ++ + E
Sbjct: 220 AELILLPYNYIIDPKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELSSTSIALCIEE 279
Query: 319 LEQVCSV 325
L++V ++
Sbjct: 280 LKKVLAL 286
Score = 237 (88.5 bits), Expect = 5.4e-44, Sum P(3) = 5.4e-44
Identities = 89/352 (25%), Positives = 164/352 (46%)
Query: 540 YKLMEKLCNRWRETGQ---------WSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQ 590
Y M++L W++T + W ++ K + VEP+ ++E V Y +S+
Sbjct: 572 YSQMDELVEVWKKTKRGASDSPETFWEKMEKTKKIAVEPR--AKEQLAAVRLRYTQGVSE 629
Query: 591 GSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSL 650
A D ES R I+VGIP+P I+D +V L
Sbjct: 630 PHGAALLAVCRGKVSEGIDFCDAES---------------RAVIIVGIPYPPIHDERVVL 674
Query: 651 KKKYNDTYRSSKNLL----SGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEE 706
KK Y D K+L S +WY +AFRA+NQAIGR +RH+ D+G ++L+D R+
Sbjct: 675 KKMYLDDLMGRKDLTNEPQSSRDWYQMEAFRAVNQAIGRVLRHKNDFGTVVLIDTRYASA 734
Query: 707 RNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMD 766
+ KWLR +I + DS + +L+ + FF++ +G + +ENS ++ ++
Sbjct: 735 KPEM-FPKWLRNTISRCDSNNCALKTAR-FFKE-RGHL-------IENSKSE--YIKKQA 782
Query: 767 Q-CKEVTKQNTQEL-NKSDHSGQNVQSISKYDPFS--HQKSQGNFEVQTS-LQTDQNNSC 821
+ CK + +Q N D ++ I+ D FS + K + +++ ++ D ++S
Sbjct: 783 KTCKSFRQVKSQSASNPKD----DITDITLEDMFSPANMKIEKKEKIEPRPIKYDSSSSS 838
Query: 822 I-------EYIDLERMNDKNNH--SIDSSKGSTRKENKKLNSYDNSGQKLHS 864
+ + + +++ +N+ ++ SS +++ K ++SGQ + S
Sbjct: 839 VFSLPTNEDELKVKKWEQENDSQTNVSSSSDLNKRKYKAETPGNSSGQHVVS 890
Score = 188 (71.2 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 69/204 (33%), Positives = 94/204 (46%)
Query: 25 VEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKL 84
++FP++PY Q +FM VI LD + D A LESPTGTGK+LSLLCSTLAW Q K
Sbjct: 19 IKFPFEPYECQRIFMKNVIDVLDM-KLD----AALESPTGTGKTLSLLCSTLAWVQKLKE 73
Query: 85 KNQLANI---SHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXXXXXX 141
+ S E D L N FIP ++ T+ Q QV
Sbjct: 74 SKPMDFATWQSSGAGGAEKTEDKLKNS--FIPTIFYAS---RTHSQLEQVVHELNRTEYK 128
Query: 142 MTPTIFYASRTHSQISQVISEYKKTAYRVPMAV-LASRK--HYCTNKY---VRDKEN--- 192
T SR H I+Q + + K++ + + L S++ HY NK+ DK N
Sbjct: 129 WVKTTILGSREHFCINQKVKKIKESNRQAHVCRGLVSKRSCHYY-NKFDALTTDKANEIL 187
Query: 193 -----IDEECKLLLGDRNLGCPQF 211
+D E + +G +N CP F
Sbjct: 188 EKGEAMDIEDFVKIGTQNSICPYF 211
Score = 69 (29.3 bits), Expect = 5.4e-44, Sum P(3) = 5.4e-44
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTG 524
P+ +F+ +G+ FG LE H + + VLTS+++ G
Sbjct: 494 PIQAFTYNMGLNFGAILENEHALK-QVPVLTSIVTRG 529
Score = 48 (22.0 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 1039 REANRRIEFNSETNYVKNKSKTSNNCAE--SHLSSTPVMDKT 1078
+E IE NS++ Y+K ++KT + + S +S P D T
Sbjct: 764 KERGHLIE-NSKSEYIKKQAKTCKSFRQVKSQSASNPKDDIT 804
Score = 39 (18.8 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 7/21 (33%), Positives = 16/21 (76%)
Query: 146 IFYASRTHSQISQVISEYKKT 166
+F++S +SQ+ +++ +KKT
Sbjct: 567 VFFSS--YSQMDELVEVWKKT 585
>MGI|MGI:2443590 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0000922 "spindle pole" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030496 "midbody" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:2443590 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0003723 GO:GO:0000790 GO:GO:0004003
GO:GO:0004386 GO:GO:0030496 GO:GO:0000922 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV GeneTree:ENSGT00530000063199
GO:GO:0007062 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC079656 IPI:IPI00460651 RefSeq:NP_001003919.1
UniGene:Mm.259605 ProteinModelPortal:Q6AXC6 SMR:Q6AXC6
STRING:Q6AXC6 PhosphoSite:Q6AXC6 PRIDE:Q6AXC6
Ensembl:ENSMUST00000163605 GeneID:320209 KEGG:mmu:320209
UCSC:uc008dha.1 InParanoid:Q6AXC6 NextBio:396263 Bgee:Q6AXC6
Genevestigator:Q6AXC6 GermOnline:ENSMUSG00000035842 Uniprot:Q6AXC6
Length = 880
Score = 207 (77.9 bits), Expect = 4.1e-41, Sum P(5) = 4.1e-41
Identities = 59/203 (29%), Positives = 97/203 (47%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXX-X 598
Y+ + ++ W +TG +RL+ +K +F EPK SQ E VL Y SKC
Sbjct: 682 YEYLRQVHAHWDKTGLLTRLSVRKKIFQEPKRASQ--VEQVLMAY-------SKCIMSCS 732
Query: 599 XXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY-NDT 657
G L+ + + + + L C ++VG+P+PNI ++ K Y N T
Sbjct: 733 HSEGHLTGALLLSVVGGKMSEGINFSDDLGRC--VVMVGMPYPNIKSPELQEKMAYLNQT 790
Query: 658 Y-RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWL 716
R+ L G N +A+NQ+IGR IRH+ D+ +I+LLD R+ A + W+
Sbjct: 791 LPRTQGQPLPGTVLIENLCMKAINQSIGRAIRHQRDFASIVLLDHRYARPSILAKLPAWI 850
Query: 717 RKSIKQYDSFDASLEGLKSFFRD 739
R ++ +F + ++ F R+
Sbjct: 851 RDRVEVKATFGPAFAAVRKFHRE 873
Score = 156 (60.0 bits), Expect = 4.1e-41, Sum P(5) = 4.1e-41
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILIL 289
EV D+E LV +G+ R C YY +R AQLV PY +++ R A + ++G ++I+
Sbjct: 304 EVKDMEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQVVII 363
Query: 290 DEAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
DEAHN+ D + S +++ L + +L Q
Sbjct: 364 DEAHNLIDTITNIHSTEVNGSQLCQAHSQLLQ 395
Score = 132 (51.5 bits), Expect = 4.1e-41, Sum P(5) = 4.1e-41
Identities = 39/108 (36%), Positives = 54/108 (50%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+GGI FP+ PY Q FM + L+ G + ESPTGTGKSLSL+C L+W
Sbjct: 8 IGGIHFPFPFPPYPIQKDFMAELYKVLE-----GGKIGIFESPTGTGKSLSLICGALSW- 61
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQ 127
L + K EA+ LA G G P S+ +++ S++ Q
Sbjct: 62 --------LRDFEKKKLQAEALL--LAPGSG-PPSSEKNSLLTSSSCQ 98
Score = 97 (39.2 bits), Expect = 4.1e-41, Sum P(5) = 4.1e-41
Identities = 54/207 (26%), Positives = 86/207 (41%)
Query: 367 KALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFS 426
K R L+++ +SR+ F EC + +D++ E L+G L+ L S T
Sbjct: 465 KVQRYLEKSMLSRKLFGFT-ECFGVVLPSLSDSQ-ENRGLAGFQQF-LKSLQSGPTEDSP 521
Query: 427 RNGS-----------HVSDYQLALQKYIKRDSK---NPGGN-WTHTLSLWCLNPAVVFKD 471
G H+ + AL +D + N G+ +L LNPAV F
Sbjct: 522 EEGQAVALRPASPLMHIEAFLAALTT-ANQDGRVIVNRQGSVGQSSLKFLLLNPAVHFAQ 580
Query: 472 VAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVIDVDLQVLTSVISTGP 525
V + PM+ F +L GV+ G +E HVI D +L +I +GP
Sbjct: 581 VVKECRAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPD-NILPLIICSGP 639
Query: 526 DNYPLNASYKTADGYKLMEK----LCN 548
N L +Y+ + +++E+ LCN
Sbjct: 640 SNQQLEFTYQRRELPQMVEETGRILCN 666
Score = 82 (33.9 bits), Expect = 4.1e-41, Sum P(5) = 4.1e-41
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTNKYVRD 189
I+Y SRTHSQ++Q + E K+ + + L SR+ C N+ V++
Sbjct: 201 IYYCSRTHSQLAQFVREVLKSPFGKETRLVSLGSRQTLCVNEDVKN 246
Score = 38 (18.4 bits), Expect = 9.8e-20, Sum P(3) = 9.8e-20
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 423 YFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDV 472
Y+ SR S QLA ++++ K+P G T +SL V +DV
Sbjct: 202 YYCSRTHS-----QLA--QFVREVLKSPFGKETRLVSLGSRQTLCVNEDV 244
Score = 37 (18.1 bits), Expect = 5.7e-25, Sum P(4) = 5.7e-25
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 151 RTHSQISQVISEYKK 165
+ HSQ+ Q + Y+K
Sbjct: 388 QAHSQLLQYMERYRK 402
>WB|WBGene00009124 [details] [associations]
symbol:rtel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:Z79754 KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224
PIR:T21356 RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 289 (106.8 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 68/189 (35%), Positives = 105/189 (55%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRD-KENIDEE--CKL 199
PTIFYASRTHSQ+ QV+ E +T Y+ V +L SR+H+C N+ V+ KE+ + C+
Sbjct: 103 PTIFYASRTHSQLEQVVHELNRTEYKWVKTTILGSREHFCINQKVKKIKESNRQAHVCRG 162
Query: 200 LLGDRNLGCPQFKNVHKVRGHPS---LQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMA 256
L+ R C + L KG E DIED V +G C Y+ +R +
Sbjct: 163 LVSKR--ACHYYNKFDACTTDKMTEFLDKG---EAMDIEDFVKLGTQNSLCPYFMSRQRS 217
Query: 257 DDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQ 316
+ A+L+ PY+YII+P +R ++D+K +I+I DEAHN+E I S ++ +
Sbjct: 218 ETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALCI 277
Query: 317 MELEQVCSV 325
EL++V ++
Sbjct: 278 EELKKVLAL 286
Score = 220 (82.5 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 75/272 (27%), Positives = 124/272 (45%)
Query: 540 YKLMEKLCNRWRET--------GQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y M++L W+ T W ++ K + VEP+ ++E+ + Y +S+
Sbjct: 574 YSQMDELVATWKTTKWSSNSNESFWEKMEKTKRVVVEPR--AKEELAAIRLRYTQGVSEQ 631
Query: 592 SKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLK 651
A D ES R I++GIP+P I+D +V LK
Sbjct: 632 HGAALLAVCRGKVSEGIDFCDAES---------------RAVIIIGIPYPPIHDERVVLK 676
Query: 652 KKYNDTYRSSKNLLS----GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEER 707
K Y D K+ S +WY +AFRA+NQAIGR +RH+ D+G ++L+D R+ +
Sbjct: 677 KMYLDDLMGRKDTKSERQSSQDWYQMEAFRAVNQAIGRVLRHKDDFGTVVLMDTRYASAK 736
Query: 708 NRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQ 767
KWLR +I + D+ +L+ + FF++ +G + +ENS + + Q
Sbjct: 737 PEM-FPKWLRNTISRSDTDGCALKTSR-FFKE-RGHL-------IENSKTEYIKKQAK-Q 785
Query: 768 CKEVTKQNTQELNKSDHSGQNVQSISKYDPFS 799
CK + ++ SD S ++ I+ D FS
Sbjct: 786 CKSF--RQVKQTAASD-SKDDIIEITLEDMFS 814
Score = 190 (71.9 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 70/204 (34%), Positives = 96/204 (47%)
Query: 23 IQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNC 82
+ V+FP++PY Q +FM V+ LDR + D A LESPTGTGK+LSLLCSTLAW Q
Sbjct: 17 LSVKFPFEPYECQRIFMKNVVDVLDR-KLD----AALESPTGTGKTLSLLCSTLAWVQRQ 71
Query: 83 KLKNQL--ANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXXXXX 140
K L A S TD ++P ++ T+ Q QV
Sbjct: 72 KETKPLDFATWQTSGAGGAEKTDEKLKSA-YVPTIFYAS---RTHSQLEQVVHELNRTEY 127
Query: 141 XMTPTIFYASRTHSQISQVISEYKKTAYRVPMAV-LASRK--HY------CT-NKYVR-- 188
T SR H I+Q + + K++ + + L S++ HY CT +K
Sbjct: 128 KWVKTTILGSREHFCINQKVKKIKESNRQAHVCRGLVSKRACHYYNKFDACTTDKMTEFL 187
Query: 189 DK-ENIDEECKLLLGDRNLGCPQF 211
DK E +D E + LG +N CP F
Sbjct: 188 DKGEAMDIEDFVKLGTQNSLCPYF 211
Score = 72 (30.4 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 442 YIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVA-EXXXXXXXXXXXXXPMNSFSSELGVQF 500
YI++D N T+ +C ++ + + P+ +F+ +G+ F
Sbjct: 453 YIQKDKDNE----KLTIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNF 508
Query: 501 GTCLEAPHVIDVDLQVLTSVISTG 524
G LE H + + VLTS+++ G
Sbjct: 509 GAILENEHALK-QVPVLTSIVTRG 531
Score = 45 (20.9 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 1039 REANRRIEFNSETNYVKNKSKTSNNCAE-SHLSSTPVMDKTLQISCSLCRSPLGL 1092
+E IE NS+T Y+K ++K + + +++ D ++I+ SP +
Sbjct: 765 KERGHLIE-NSKTEYIKKQAKQCKSFRQVKQTAASDSKDDIIEITLEDMFSPANM 818
>UNIPROTKB|Q93575 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0005634
"nucleus" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IGI] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:Z79754
KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224 PIR:T21356
RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 289 (106.8 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 68/189 (35%), Positives = 105/189 (55%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYR-VPMAVLASRKHYCTNKYVRD-KENIDEE--CKL 199
PTIFYASRTHSQ+ QV+ E +T Y+ V +L SR+H+C N+ V+ KE+ + C+
Sbjct: 103 PTIFYASRTHSQLEQVVHELNRTEYKWVKTTILGSREHFCINQKVKKIKESNRQAHVCRG 162
Query: 200 LLGDRNLGCPQFKNVHKVRGHPS---LQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMA 256
L+ R C + L KG E DIED V +G C Y+ +R +
Sbjct: 163 LVSKR--ACHYYNKFDACTTDKMTEFLDKG---EAMDIEDFVKLGTQNSLCPYFMSRQRS 217
Query: 257 DDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQ 316
+ A+L+ PY+YII+P +R ++D+K +I+I DEAHN+E I S ++ +
Sbjct: 218 ETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALCI 277
Query: 317 MELEQVCSV 325
EL++V ++
Sbjct: 278 EELKKVLAL 286
Score = 220 (82.5 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 75/272 (27%), Positives = 124/272 (45%)
Query: 540 YKLMEKLCNRWRET--------GQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y M++L W+ T W ++ K + VEP+ ++E+ + Y +S+
Sbjct: 574 YSQMDELVATWKTTKWSSNSNESFWEKMEKTKRVVVEPR--AKEELAAIRLRYTQGVSEQ 631
Query: 592 SKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLK 651
A D ES R I++GIP+P I+D +V LK
Sbjct: 632 HGAALLAVCRGKVSEGIDFCDAES---------------RAVIIIGIPYPPIHDERVVLK 676
Query: 652 KKYNDTYRSSKNLLS----GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEER 707
K Y D K+ S +WY +AFRA+NQAIGR +RH+ D+G ++L+D R+ +
Sbjct: 677 KMYLDDLMGRKDTKSERQSSQDWYQMEAFRAVNQAIGRVLRHKDDFGTVVLMDTRYASAK 736
Query: 708 NRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQ 767
KWLR +I + D+ +L+ + FF++ +G + +ENS + + Q
Sbjct: 737 PEM-FPKWLRNTISRSDTDGCALKTSR-FFKE-RGHL-------IENSKTEYIKKQAK-Q 785
Query: 768 CKEVTKQNTQELNKSDHSGQNVQSISKYDPFS 799
CK + ++ SD S ++ I+ D FS
Sbjct: 786 CKSF--RQVKQTAASD-SKDDIIEITLEDMFS 814
Score = 190 (71.9 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 70/204 (34%), Positives = 96/204 (47%)
Query: 23 IQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNC 82
+ V+FP++PY Q +FM V+ LDR + D A LESPTGTGK+LSLLCSTLAW Q
Sbjct: 17 LSVKFPFEPYECQRIFMKNVVDVLDR-KLD----AALESPTGTGKTLSLLCSTLAWVQRQ 71
Query: 83 KLKNQL--ANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMXXXXXXX 140
K L A S TD ++P ++ T+ Q QV
Sbjct: 72 KETKPLDFATWQTSGAGGAEKTDEKLKSA-YVPTIFYAS---RTHSQLEQVVHELNRTEY 127
Query: 141 XMTPTIFYASRTHSQISQVISEYKKTAYRVPMAV-LASRK--HY------CT-NKYVR-- 188
T SR H I+Q + + K++ + + L S++ HY CT +K
Sbjct: 128 KWVKTTILGSREHFCINQKVKKIKESNRQAHVCRGLVSKRACHYYNKFDACTTDKMTEFL 187
Query: 189 DK-ENIDEECKLLLGDRNLGCPQF 211
DK E +D E + LG +N CP F
Sbjct: 188 DKGEAMDIEDFVKLGTQNSLCPYF 211
Score = 72 (30.4 bits), Expect = 5.2e-41, Sum P(3) = 5.2e-41
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 442 YIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVA-EXXXXXXXXXXXXXPMNSFSSELGVQF 500
YI++D N T+ +C ++ + + P+ +F+ +G+ F
Sbjct: 453 YIQKDKDNE----KLTIKYFCFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNF 508
Query: 501 GTCLEAPHVIDVDLQVLTSVISTG 524
G LE H + + VLTS+++ G
Sbjct: 509 GAILENEHALK-QVPVLTSIVTRG 531
Score = 45 (20.9 bits), Expect = 7.2e-23, Sum P(3) = 7.2e-23
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 1039 REANRRIEFNSETNYVKNKSKTSNNCAE-SHLSSTPVMDKTLQISCSLCRSPLGL 1092
+E IE NS+T Y+K ++K + + +++ D ++I+ SP +
Sbjct: 765 KERGHLIE-NSKTEYIKKQAKQCKSFRQVKQTAASDSKDDIIEITLEDMFSPANM 818
>ZFIN|ZDB-GENE-041114-191 [details] [associations]
symbol:ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box
helicase 11" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-041114-191 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC085645 IPI:IPI00501779 RefSeq:NP_001007320.1
UniGene:Dr.37620 ProteinModelPortal:Q5U399 STRING:Q5U399
GeneID:492353 KEGG:dre:492353 InParanoid:Q5U399 NextBio:20864919
ArrayExpress:Q5U399 Uniprot:Q5U399
Length = 890
Score = 200 (75.5 bits), Expect = 8.4e-39, Sum P(5) = 8.4e-39
Identities = 58/200 (29%), Positives = 92/200 (46%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ +++ W TG RL +KK +F EPK SQ E VL Y SKC
Sbjct: 693 YEYEKRILGHWESTGILQRLQSKKKIFQEPKKASQ--VEQVLSEY-------SKCIQRCS 743
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLA-VCRGKIVVGIPFPNINDIQVSLKKKYNDTY 658
+ L ++ + + +G +F + R ++VG+P+PNI ++ K Y D +
Sbjct: 744 NIGGGQTGALLFSVVGGKMS--EGINFSDDLGRCIVMVGMPYPNIKSPELQEKMAYLDKH 801
Query: 659 RSSKNLLS-GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
S G + +A+NQ+IGR IRHR DY I+L D R+ + +W+R
Sbjct: 802 MPHVAGKSPGKALVESLCMKAVNQSIGRAIRHRGDYACIVLCDHRYARTGTLQKLPEWIR 861
Query: 718 KSIKQYDSFDASLEGLKSFF 737
S + +F + + FF
Sbjct: 862 SSTHTHATFGPAFASARRFF 881
Score = 154 (59.3 bits), Expect = 8.4e-39, Sum P(5) = 8.4e-39
Identities = 40/142 (28%), Positives = 67/142 (47%)
Query: 184 NKYVRDKENIDEECKLLLGDRNLGC--PQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVG 241
NK+ + ++ D E K G C +F+N+ ++ ++ V D+E L+ G
Sbjct: 270 NKHEKRQKASDSESKRSRGLAKATCVFSRFENLMAMKDEVLVK------VRDVEQLIQHG 323
Query: 242 QVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARD 301
+ C YY+ R AQ+V PY +++ R A + +K I+I+DEAHN+ D
Sbjct: 324 RETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKLKDQIVIIDEAHNLMDTISA 383
Query: 302 AGSVDIDEDVLLKLQMELEQVC 323
S +I L + +L Q C
Sbjct: 384 IHSAEISGGQLCRAHSQLSQYC 405
Score = 137 (53.3 bits), Expect = 8.4e-39, Sum P(5) = 8.4e-39
Identities = 32/85 (37%), Positives = 50/85 (58%)
Query: 27 FPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCK--L 84
FP+QPY Q FM + + LD+ ++ G + ESPTGTGKSLSL+C L W ++ +
Sbjct: 10 FPFQPYPIQESFMEALYTALDQ-RKVG----IFESPTGTGKSLSLICGALTWLRDYEEQR 64
Query: 85 KNQLANISHSKPDTEAVTDPLANGG 109
K + A + + D++ V + +N G
Sbjct: 65 KQEAARLLEGQKDSDVVKEKNSNSG 89
Score = 92 (37.4 bits), Expect = 8.4e-39, Sum P(5) = 8.4e-39
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTN-KYVR--DKENIDEEC 197
I+Y SRTHSQ++Q + E +K+ Y V + L SR++ C N + VR + + ++E C
Sbjct: 208 IYYCSRTHSQLAQFVHEVQKSPYGDAVRLVNLGSRQNLCINPEVVRLGNVQMMNERC 264
Score = 69 (29.3 bits), Expect = 8.4e-39, Sum P(5) = 8.4e-39
Identities = 25/95 (26%), Positives = 39/95 (41%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LN AV F + + P+ F +L GV LE HVI
Sbjct: 577 SLKFLLLNAAVHFAQILQECRAVIIAGGTMQPVADFKEQLLFSAGVTEERILEFSCGHVI 636
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK 545
+ +L V+ GP L +++T D ++ME+
Sbjct: 637 PPE-NILPIVLCAGPSGQQLEFTFQTRDSPQMMEE 670
Score = 52 (23.4 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR 169
IF + SQ+ QV+SEY K R
Sbjct: 718 IFQEPKKASQVEQVLSEYSKCIQR 741
Score = 41 (19.5 bits), Expect = 1.2e-19, Sum P(4) = 1.2e-19
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 1184 VASNALNFQLLNKILFYLDRL-EIR--IPESGKFKSEAKDSSPITHSA---MDKVAAFSC 1237
VA ++L F LLN + + L E R I G + A + SA +++ FSC
Sbjct: 573 VAQSSLKFLLLNAAVHFAQILQECRAVIIAGGTMQPVADFKEQLLFSAGVTEERILEFSC 632
Score = 40 (19.1 bits), Expect = 3.7e-22, Sum P(4) = 3.7e-22
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 151 RTHSQISQVISEYK 164
R HSQ+SQ Y+
Sbjct: 396 RAHSQLSQYCERYR 409
>UNIPROTKB|A8MPP1 [details] [associations]
symbol:DDX11L8 "Putative ATP-dependent RNA helicase
DDX11-like protein 8" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 EMBL:AC009533
IPI:IPI00872853 ProteinModelPortal:A8MPP1 SMR:A8MPP1 STRING:A8MPP1
PhosphoSite:A8MPP1 PaxDb:A8MPP1 PRIDE:A8MPP1 GeneCards:GC12M000095
HGNC:HGNC:37101 neXtProt:NX_A8MPP1 HOVERGEN:HBG058884
InParanoid:A8MPP1 OrthoDB:EOG4B5P4M Genevestigator:A8MPP1
Uniprot:A8MPP1
Length = 907
Score = 193 (73.0 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 56/202 (27%), Positives = 93/202 (46%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ + ++ W + G RL A+K +F EPK Q E VL Y I C
Sbjct: 711 YEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQ--VEQVLLAYSRCIQA---CGQERG 765
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY- 658
L+ + + + + L C ++VG+PFPNI ++ K Y D
Sbjct: 766 QVTEALL---LSVVGGKMSEGINFSDNLGRC--VVMVGMPFPNIRSAELQEKMAYLDQTL 820
Query: 659 -RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
R+ G N +A+NQ+IGR IRH+ D+ +I+LLD+R+ A + W+R
Sbjct: 821 PRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLAKLPAWIR 880
Query: 718 KSIKQYDSFDASLEGLKSFFRD 739
S++ +F ++ ++ F R+
Sbjct: 881 ASVEVKATFGPAIAAVQKFHRE 902
Score = 156 (60.0 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 40/138 (28%), Positives = 70/138 (50%)
Query: 184 NKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQV 243
+++ + K +E+ K ++ CP F N H+ G L+ EV D+E L+ +G+
Sbjct: 293 SRHEKKKGAEEEKPKRRRQEKQAACP-FYN-HEQMG--LLRDEALAEVKDMEQLLALGKE 348
Query: 244 VRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAG 303
R C YY +R A+LV PY +++ R A + ++ ++I+DEAHN+ D
Sbjct: 349 ARACPYYRSRLAIPAAKLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMH 408
Query: 304 SVDIDEDVLLKLQMELEQ 321
SV++ L + +L Q
Sbjct: 409 SVEVSGSQLCQAHSQLLQ 426
Score = 128 (50.1 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
Score = 91 (37.1 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I++ SRTHSQ++Q + E KK+ + V + L SR++ C N+ VR
Sbjct: 231 IYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVR 275
Score = 77 (32.2 bits), Expect = 5.7e-38, Sum P(5) = 5.7e-38
Identities = 31/102 (30%), Positives = 45/102 (44%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
TL LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 596 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVI 655
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D L VI +G N PL +++ D ++M++ LCN
Sbjct: 656 PPDNIPL--VICSGISNQPLEFTFQKRDLPQMMDEVGRILCN 695
Score = 63 (27.2 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 38/177 (21%), Positives = 80/177 (45%)
Query: 687 IRHRFD--YGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSF-FRDVKGW 743
++HR Y A L E +E N +S+ + ++ + + + G + + +
Sbjct: 147 LQHRVQLKYAAKRLRQEE-EETENLLRLSREMLETGPEAERLEQLESGEEELVLAEYESD 205
Query: 744 VGKKMFNG--LENSDNDVD--HVSSMDQCKEVTKQNTQ---ELNKSDHSGQNVQSISKYD 796
KK+ +G ++ ++D++ H++ + C Q Q E+ KS G++V+ +S
Sbjct: 206 EEKKVASGHRVDEDEDDLEEEHITKIYHCSRTHSQLAQFVHEVKKSPF-GKDVRLVSLG- 263
Query: 797 PFSHQKSQGNFEVQTSLQTDQ--NNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKK 851
S Q N +V+ SL + Q N+ C+ D++R + + K R++ K+
Sbjct: 264 --SRQNLCVNEDVR-SLGSVQLINDRCV---DMQRSRHEKKKGAEEEKPKRRRQEKQ 314
Score = 37 (18.1 bits), Expect = 6.8e-22, Sum P(5) = 6.8e-22
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 744 VGKKMFNGLENSDN 757
VG KM G+ SDN
Sbjct: 776 VGGKMSEGINFSDN 789
>UNIPROTKB|F1NN99 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0030496 "midbody"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AADN02006472
EMBL:AADN02006473 IPI:IPI00575083 IntAct:F1NN99
Ensembl:ENSGALT00000021158 Uniprot:F1NN99
Length = 908
Score = 197 (74.4 bits), Expect = 8.5e-38, Sum P(5) = 8.5e-38
Identities = 58/200 (29%), Positives = 94/200 (47%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y +++ W +TG +RL KK +F EPK +Q E VL Y I +C
Sbjct: 715 YDYEKQVYAHWEKTGLLTRLATKKKIFQEPKKANQ--VEQVLAEYAKCIK---RCGQAGG 769
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYND-TY 658
G L+ + + + + L C I+VG+P+PNI ++ K + D T
Sbjct: 770 QMT---GALLLSVVGGKMSEGINFSDDLGRC--VIMVGMPYPNIKSPELQEKMTWLDKTM 824
Query: 659 RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRK 718
S + N +A+NQ+IGR IRH+ DY +I+LLD R+ + +W+R+
Sbjct: 825 PRSASQAPSRVLIENLCMKAVNQSIGRAIRHQKDYASILLLDHRYARPAILNKLPQWIRE 884
Query: 719 SIKQYDSFDASLEGLKSFFR 738
I+ +F ++ L+ F R
Sbjct: 885 RIQVKPAFGSAFAELRKFHR 904
Score = 147 (56.8 bits), Expect = 8.5e-38, Sum P(5) = 8.5e-38
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILIL 289
EV DIE LV +G+ + C YY +R AQLV PY +++ R A + +K ++I+
Sbjct: 332 EVKDIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIILKDQVVII 391
Query: 290 DEAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
DEAHN+ D S ++ L +L Q
Sbjct: 392 DEAHNLIDTITCIYSAEVSGSQLCCAHSQLLQ 423
Score = 124 (48.7 bits), Expect = 8.5e-38, Sum P(5) = 8.5e-38
Identities = 35/105 (33%), Positives = 49/105 (46%)
Query: 21 GGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGT-GKSLSLLCSTLAWQ 79
G FPY PY Q FM + + L+ C + E P G GKSLSL+C L+W
Sbjct: 9 GRASFPFPYTPYRIQEQFMAALYAALEAGVVI--CVCVEEDPHGPRGKSLSLICGALSWL 66
Query: 80 QNCKLKNQLANISHSKPDTEAVTD--PLANGGGFIPESQPSTIPP 122
Q+ + K Q P+ + PLA+GG P S+ ++ P
Sbjct: 67 QDFEKKKQQEEARLLAPEGSGQEEKQPLASGGPACPNSRDASGEP 111
Score = 93 (37.8 bits), Expect = 8.5e-38, Sum P(5) = 8.5e-38
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVRDKENIDEECKLLLGD 203
I+Y SRTHSQ+SQ + E +K+ + + L SR++ C N+ VR + L+ D
Sbjct: 230 IYYCSRTHSQLSQFVHEVQKSPFGKDTRLVSLGSRQNLCVNEEVRRLGALQ-----LIND 284
Query: 204 RNLGCPQF-KNVHKVRGHPSLQ 224
R C + KN H+ + ++
Sbjct: 285 R---CTEMQKNKHEKKSDAEVE 303
Score = 82 (33.9 bits), Expect = 8.5e-38, Sum P(5) = 8.5e-38
Identities = 29/102 (28%), Positives = 45/102 (44%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LNPAV F V + P+ F +L GV +E HVI
Sbjct: 599 SLKFLLLNPAVHFAKVVKECRAVIIAGGTMQPVADFREQLLSYAGVDPARIVEFSCGHVI 658
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
+ +L ++ +GP N L +Y+T D ++M++ LCN
Sbjct: 659 PPE-NILPIILCSGPSNQQLEFTYQTRDLPQMMDETGRILCN 699
Score = 60 (26.2 bits), Expect = 0.00069, Sum P(3) = 0.00069
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 746 KKMFNGLENSDND---VDHVSSMDQCKEVTKQNTQ---ELNKSDHSGQNVQSISKYDPFS 799
KK+ +GLE D+D +HV+ + C Q +Q E+ KS G++ + +S S
Sbjct: 208 KKVASGLEEDDDDDLEEEHVTKIYYCSRTHSQLSQFVHEVQKSPF-GKDTRLVSLG---S 263
Query: 800 HQKSQGNFEVQT--SLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYD 856
Q N EV+ +LQ N+ C E + + K++ ++ K + SY+
Sbjct: 264 RQNLCVNEEVRRLGALQLI-NDRCTE-MQKNKHEKKSDAEVEGKKRRVSRTVCPFYSYE 320
Score = 40 (19.1 bits), Expect = 1.5e-17, Sum P(4) = 1.5e-17
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 1074 VMDKTLQISCSLC 1086
+MD+T +I C+LC
Sbjct: 689 MMDETGRILCNLC 701
>CGD|CAL0004313 [details] [associations]
symbol:orf19.2000 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007535
"donor selection" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0007049
GO:GO:0004003 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719450.1 RefSeq:XP_719578.1 ProteinModelPortal:Q5AD67
STRING:Q5AD67 GeneID:3638692 GeneID:3638794 KEGG:cal:CaO19.2000
KEGG:cal:CaO19.9551 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 Uniprot:Q5AD67
Length = 842
Score = 238 (88.8 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 98/378 (25%), Positives = 165/378 (43%)
Query: 146 IFYASRTHSQISQVISEYKKTAY---------RVPMAVLASRKHYCTNKYVRDKEN---I 193
IF++SRTHSQ++Q S+ + T + R L SRK C N+ VR K N +
Sbjct: 203 IFFSSRTHSQLNQFSSQLRLTNFQASFEDLEERTKYIPLGSRKQLCINEKVRSKGNDQSV 262
Query: 194 DEECKLLLGDRNLGCPQF-KNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAA 252
++ C L + N GC KN ++ DIEDL +G + C YY+
Sbjct: 263 NDACLDLQRETN-GCQYLPKNYMMSSVTKEFADLSLAKIRDIEDLNELGIELNICPYYSV 321
Query: 253 RSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVL 312
R + +++ PY I R + +DIK +I+I+DEAHNI D+ S+ I D L
Sbjct: 322 RKGIEMTEIISLPYQMIFQDTTRKILNLDIKDSIIIIDEAHNIIDVITSMYSIKITSDQL 381
Query: 313 ------LKLQME--LEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLAKRE---FQHFFS 361
LK+ + L+++ S N + LI++ Q L+ ++ + + Q F
Sbjct: 382 NKVIKSLKIYLNKFLKRLNSGNRINLMKLIKICQILLKFLNTNSEKVKSGDEVQIQDIFK 441
Query: 362 CWTGDKA-LRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSS 420
TGD + +L + +++ +E + E T+ E++ G IT G SS
Sbjct: 442 DSTGDLVNIHKLDQF-LTKSKIAYKIE----SYIEKTEMETDNGEKKGR--ITNSGGSSS 494
Query: 421 LTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSL--WCLNPAVVFKDVAEXXXX 478
+ + + + L + ++ K N T+SL L+P+ VFK++ +
Sbjct: 495 SSSSSNPLLFTIIKFLRTLTN-LSKEGKFFWDNENGTISLNYMLLDPSAVFKEIVDQAKC 553
Query: 479 XXXXXXXXXPMNSFSSEL 496
PM+ + L
Sbjct: 554 VLLCGGTMEPMSDYMDYL 571
Score = 175 (66.7 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 55/187 (29%), Positives = 87/187 (46%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
YK ++++ WR+T + + ++K +F EPK S + E VL Y I K A
Sbjct: 645 YKYLDQVLQFWRDTKILTSIESEKTIFREPKDPS--NVEKVLNEYGYLIQTERKGAILFS 702
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYR 659
G I ++ + R I+VG+P+PN ++ K+KY +T
Sbjct: 703 VV----GGKMSEGINFSDD----------LARAVIMVGLPYPNAYSGEMVTKRKYIETSE 748
Query: 660 SSKNLLS------GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHIS 713
S + +Y N RA+NQ+IGR IRH DY I L+D RF R + +S
Sbjct: 749 LSNGGTTTDAKEKSRNYYENLCMRAVNQSIGRSIRHINDYSIIYLVDRRFSTPRIQNKLS 808
Query: 714 KWLRKSI 720
+W+++ I
Sbjct: 809 QWVKERI 815
Score = 126 (49.4 bits), Expect = 9.9e-37, Sum P(3) = 9.9e-37
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQ 87
PY PY Q+ M + +T++ + G L ESPTGTGK+LS++CS++ W + K N
Sbjct: 13 PYTPYDIQIQLMDAIYNTIENGYKIG----LFESPTGTGKTLSIICSSMTWLRTFKRNNT 68
Query: 88 LANISHSKPD 97
++ D
Sbjct: 69 FLETNNEVED 78
>UNIPROTKB|E1BL06 [details] [associations]
symbol:E1BL06 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0003677 GO:GO:0000790 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 InterPro:IPR014001 SMART:SM00487
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:DAAA02014574
EMBL:DAAA02014575 EMBL:DAAA02014576 EMBL:DAAA02014577
IPI:IPI00707607 Ensembl:ENSBTAT00000009329 Uniprot:E1BL06
Length = 913
Score = 172 (65.6 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 49/208 (23%), Positives = 93/208 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSI-----SQGSKC 594
Y+ ++C W ++G +RL +K +F EP+ ++ E VL Y I +QG++
Sbjct: 709 YEYQHQVCTHWEKSGLLARLTIRKKIFQEPRKANR--VEQVLLEYSRCIKHCGQAQGTET 766
Query: 595 AXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKY 654
+ + +N + + G + +V G + V P + + +
Sbjct: 767 GALLLSVVGGKMSEGINFSDDLGRPQRDGRA--SVLLG-VFVPSPVVSAAGAHEAHWSRP 823
Query: 655 NDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISK 714
+ R G N +A+NQ+IGR IRH+ D+ +I+LLD+R+ +A +
Sbjct: 824 RASPRGPGQARPGKVLVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYASPAIQAKLPA 883
Query: 715 WLRKSIKQYDSFDASLEGLKSFFRDVKG 742
W+R ++ +F + L+ F R+ G
Sbjct: 884 WIRDRVEVKATFGPAFAALRKFHREKAG 911
Score = 148 (57.2 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 30/91 (32%), Positives = 50/91 (54%)
Query: 231 VHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILD 290
V D+E LV +G+ + C YY R AQLV PY +++ R A + ++G ++++D
Sbjct: 332 VKDVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQVVVID 391
Query: 291 EAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
EAHN+ D + SV++ L + +L Q
Sbjct: 392 EAHNLIDTITNIHSVEVRGSQLCQAHSQLLQ 422
Score = 133 (51.9 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 39/110 (35%), Positives = 54/110 (49%)
Query: 21 GGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQ 80
GGI FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W +
Sbjct: 9 GGIHFPFPFTPYAIQKDFMAALYQVLE-AGKIG----IFESPTGTGKSLSLICGALSWLR 63
Query: 81 NCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQ 130
+ + K + A + LA G +P S + P T G T +
Sbjct: 64 DFEQKKRQEEERLLGAGAPASHNGLAPALG-LPSSCQGS--PGTPGATGE 110
Score = 87 (35.7 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR--DKENIDEEC 197
I+Y SRTHSQ++Q + E +K+ + + L SR++ C N VR + I++ C
Sbjct: 226 IYYCSRTHSQLAQFVHEVQKSPFGQDTRLVSLGSRQNLCVNGDVRKGSVQLINDRC 281
Score = 81 (33.6 bits), Expect = 2.3e-35, Sum P(5) = 2.3e-35
Identities = 29/102 (28%), Positives = 46/102 (45%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 593 SLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLLAGAGVEAERVVEFSCGHVI 652
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L +I +GP N L+ +Y+ ++M++ LCN
Sbjct: 653 PPD-HILPLIICSGPSNQMLDFTYQKRGLPQMMDETGRILCN 693
Score = 60 (26.2 bits), Expect = 8.5e-05, Sum P(3) = 8.5e-05
Identities = 38/156 (24%), Positives = 67/156 (42%)
Query: 752 LENSDNDVDHVSSMDQCKEVTKQNTQ---ELNKSDHSGQNVQSISKYDPFSHQKSQGNFE 808
++ D D +HV+ + C Q Q E+ KS GQ+ + +S S Q N +
Sbjct: 213 MDEDDLDEEHVTKIYYCSRTHSQLAQFVHEVQKSPF-GQDTRLVSLG---SRQNLCVNGD 268
Query: 809 VQTSLQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKY 868
V+ N+ C+E ++R + SI + TR+ + Q+ ++ +
Sbjct: 269 VRKGSVQLINDRCVE---MQRSKHERK-SITEEEEPTRRRRR---------QEPRATCPF 315
Query: 869 DSFPGLNLL-DEV-----EVQEFVQL-DRVSSCKDY 897
S+ L LL DEV +V++ V L + +C Y
Sbjct: 316 YSYERLQLLRDEVLVGVKDVEQLVALGEEAQACPYY 351
Score = 40 (19.1 bits), Expect = 5.9e-18, Sum P(4) = 5.9e-18
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 1074 VMDKTLQISCSLC 1086
+MD+T +I C+LC
Sbjct: 683 MMDETGRILCNLC 695
>SGD|S000005929 [details] [associations]
symbol:CHL1 "Probable DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007059 "chromosome segregation"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=ISS;IMP]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0007064
"mitotic sister chromatid cohesion" evidence=IGI;IMP;IPI]
[GO:0032508 "DNA duplex unwinding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0036297 "interstrand cross-link repair" evidence=IGI]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IGI;IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0007535 "donor selection"
evidence=IGI;IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 SGD:S000005929
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006270 EMBL:Z71255 EMBL:BK006949 GO:GO:0004003 EMBL:Z48483
EMBL:U33335 GO:GO:0003678 GO:GO:0007064 GO:GO:0045910
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV OrthoDB:EOG408RH6 EMBL:X56584
PIR:S12499 RefSeq:NP_015317.1 ProteinModelPortal:P22516 SMR:P22516
DIP:DIP-4044N IntAct:P22516 MINT:MINT-526050 STRING:P22516
PaxDb:P22516 PeptideAtlas:P22516 EnsemblFungi:YPL008W GeneID:856099
KEGG:sce:YPL008W CYGD:YPL008w GeneTree:ENSGT00530000063199
NextBio:981143 Genevestigator:P22516 GermOnline:YPL008W
GO:GO:0007535 GO:GO:0036297 Uniprot:P22516
Length = 861
Score = 216 (81.1 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 60/184 (32%), Positives = 103/184 (55%)
Query: 146 IFYASRTHSQISQVISEYKKTAY------RVP-----MAVLASRKHYCTN-KYVRDK--E 191
I+YASRT+SQ+ Q S+ + ++ +VP LAS+K C N K ++ K E
Sbjct: 233 IYYASRTYSQLGQFTSQLRLPSFPSSFRDKVPDEKVKYLPLASKKQLCINPKVMKWKTLE 292
Query: 192 NIDEECKLLLGDRNLGCPQFKNVHKVRGHP---SLQKGGCHEVHDIEDLVNVGQVVRGCS 248
I++ C L + GC ++N ++ R P +L+ E+ DIEDLV +G+ + C
Sbjct: 293 AINDACADLRHSKE-GCIFYQNTNEWRHCPDTLALRDMIFSEIQDIEDLVPLGKSLGICP 351
Query: 249 YYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID 308
YYA+R A++V PY Y+++ R +++++++ +I+I+DEAHN+ + S I
Sbjct: 352 YYASREALPIAEVVTLPYQYLLSESTRSSLQINLENSIVIIDEAHNLIETINSIYSSQIS 411
Query: 309 -EDV 311
ED+
Sbjct: 412 LEDL 415
Score = 172 (65.6 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 55/209 (26%), Positives = 98/209 (46%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG-SKCAXXX 598
Y+ + + W++ +++ LN + +F E K G +D +L Y +S+++G
Sbjct: 670 YQYLAHVIQCWKQNDRFATLNNVRKIFYEAKDG--DD---ILSGYSDSVAEGRGSLLLAI 724
Query: 599 XXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY 658
EG I Q++ +CR ++VG+PFPNI ++ +K+K+
Sbjct: 725 VGGKLSEG------INFQDD----------LCRAVVMVGLPFPNIFSGELIVKRKH---- 764
Query: 659 RSSKNLLSGN----------EWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERN 708
++K + SG E+ N +A+NQ++GR IRH DY I LLD R+
Sbjct: 765 LAAKIMKSGGTEEEASRATKEFMENICMKAVNQSVGRAIRHANDYANIYLLDVRYNRPNF 824
Query: 709 RAHISKWLRKSIKQYDSFDASLEGLKSFF 737
R +S+W++ SI + + + FF
Sbjct: 825 RKKLSRWVQDSINSEHTTHQVISSTRKFF 853
Score = 131 (51.2 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCK---L 84
PY+PY Q+ M T+ R +G A+LESPTGTGK+LSL+C+T+ W + K
Sbjct: 13 PYKPYDIQVQLM----ETVYRVLSEGKKIAILESPTGTGKTLSLICATMTWLRMNKADIF 68
Query: 85 KNQLANISHSKPDTEAVTD 103
NI ++ D+E ++D
Sbjct: 69 TRMETNIKTNEDDSENLSD 87
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 62 PTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSK 95
P + K L + + W+ + + A++ HSK
Sbjct: 272 PLASKKQLCINPKVMKWKTLEAINDACADLRHSK 305
>UNIPROTKB|Q92771 [details] [associations]
symbol:DDX12P "Putative ATP-dependent RNA helicase DDX12"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0007049
GO:GO:0004003 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 EMBL:AC092821 EMBL:AC141557
EMBL:U33834 IPI:IPI00023299 UniGene:Hs.447869 UniGene:Hs.504688
ProteinModelPortal:Q92771 SMR:Q92771 STRING:Q92771
PhosphoSite:Q92771 DMDM:182705254 PRIDE:Q92771
GeneCards:GC12M009720 HGNC:HGNC:2737 MIM:601151 neXtProt:NX_Q92771
InParanoid:Q92771 ArrayExpress:Q92771 CleanEx:HS_DDX12
Genevestigator:Q92771 Uniprot:Q92771
Length = 950
Score = 179 (68.1 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 52/197 (26%), Positives = 93/197 (47%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ + ++ W + G RL A+K +F EPK Q + +++L Y+ Q C
Sbjct: 729 YEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQVE-QVLLA--YSRCLQA--CGQERG 783
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY- 658
G L+ + + + + L C ++VG+PFPNI ++ K Y D
Sbjct: 784 PVT---GALLLSVVGGKMSEGINFSDNLGRC--VVMVGMPFPNIRSAELQEKMAYLDQTL 838
Query: 659 -RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
R+ G N +A+NQ+IGR IRH+ D+ +I+LLD+R+ A + W+R
Sbjct: 839 PRAPGQAHPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPVLAKLPAWIR 898
Query: 718 KSIKQYDSFDASLEGLK 734
++ +F ++ ++
Sbjct: 899 ARVEVKATFGPAIAAVQ 915
Score = 163 (62.4 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 41/138 (29%), Positives = 70/138 (50%)
Query: 184 NKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQV 243
+++ + K +E+ K ++ CP F N H+ G L+ EV D+E L+ +G+
Sbjct: 310 SRHEKKKGAEEEKPKRRRQEKQAACP-FYN-HEQMG--LLRDEALAEVKDMEQLLALGKE 365
Query: 244 VRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAG 303
R C YY +R AQLV PY +++ R A + ++ ++I+DEAHN+ D
Sbjct: 366 ARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTTTSMH 425
Query: 304 SVDIDEDVLLKLQMELEQ 321
SV++ L + +L Q
Sbjct: 426 SVEVSGSQLCQAHSQLLQ 443
Score = 91 (37.1 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 58 LLESPTGTGKSLSLLCSTLAWQQNCKLKNQ 87
+ ESPTGTGKSLSL+C L+W ++ + K +
Sbjct: 60 IFESPTGTGKSLSLICGALSWLRDFEQKKR 89
Score = 91 (37.1 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I++ SRTHSQ++Q + E KK+ + V + L SR++ C N+ VR
Sbjct: 248 IYHCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVR 292
Score = 89 (36.4 bits), Expect = 1.8e-34, Sum P(5) = 1.8e-34
Identities = 31/102 (30%), Positives = 47/102 (46%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
TL LNPAV F V + P+++F +L GV+ +E HVI
Sbjct: 613 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSNFRQQLLACAGVEAERVVEFSCGHVI 672
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L VI +G N PL +++ D ++M++ LCN
Sbjct: 673 PPD-NILPLVICSGVSNQPLEFTFQKRDLPQMMDEVGRILCN 713
Score = 38 (18.4 bits), Expect = 6.3e-17, Sum P(4) = 6.3e-17
Identities = 11/55 (20%), Positives = 26/55 (47%)
Query: 353 KREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLS 407
K+E + + ++A R+ +E + + + L+ A K +++ + L LS
Sbjct: 139 KKEERDLVNRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 193
Score = 37 (18.1 bits), Expect = 5.1e-20, Sum P(5) = 5.1e-20
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 744 VGKKMFNGLENSDN 757
VG KM G+ SDN
Sbjct: 794 VGGKMSEGINFSDN 807
>FB|FBgn0026876 [details] [associations]
symbol:CG11403 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
EMBL:AE014298 GO:GO:0006200 GO:GO:0004003 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K11273
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 EMBL:AL121806 EMBL:AY058540
RefSeq:NP_569898.1 UniGene:Dm.4169 SMR:Q9XZS9 STRING:Q9XZS9
EnsemblMetazoa:FBtr0070245 GeneID:31072 KEGG:dme:Dmel_CG11403
UCSC:CG11403-RA FlyBase:FBgn0026876 InParanoid:Q9XZS9
OrthoDB:EOG4Q83CB GenomeRNAi:31072 NextBio:771801 Uniprot:Q9XZS9
Length = 861
Score = 243 (90.6 bits), Expect = 2.8e-33, Sum P(3) = 2.8e-33
Identities = 67/195 (34%), Positives = 103/195 (52%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTNKYVRDKENI---DEEC--- 197
IF+ SRTHSQ++Q+++E +KT + V L SR+ C N VR +++ +E C
Sbjct: 190 IFFCSRTHSQLAQIVAELRKTPHGQSVRSISLGSRQQLCGNPAVRKLKHVGLMNERCLDM 249
Query: 198 ------------KLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVR 245
L + N CP FK V SL+ E DIE+L N G
Sbjct: 250 ATKKARPNPSKKSRLTAEANSRCP-FKAASLVE---SLRDLALTEPLDIEELANEGTACG 305
Query: 246 GCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIED-IARDAGS 304
GCSYYA+RS + AQL+ PY ++ R + + +KG+I+I+DEAHN+ D +A+ GS
Sbjct: 306 GCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISLKGSIVIVDEAHNLLDSVAQLHGS 365
Query: 305 VDIDEDVLLKLQMEL 319
+I L + ++++
Sbjct: 366 -EISRQQLERAKVQI 379
Score = 150 (57.9 bits), Expect = 2.8e-33, Sum P(3) = 2.8e-33
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R +VVG+P+ N ++ + ++ D +GNE+Y N +A+NQ IGR +RH
Sbjct: 751 RAVLVVGLPYSNSLSPELRQRMQHLDEKLGPG---AGNEYYENLCVKAVNQCIGRAVRHI 807
Query: 691 FDYGAIILLDERFQEERNRAHISKWLRKSI 720
DY + LLD+RF + + R + KW+ + I
Sbjct: 808 KDYACVYLLDKRFADPKIRGKLPKWISRHI 837
Score = 113 (44.8 bits), Expect = 2.8e-33, Sum P(3) = 2.8e-33
Identities = 29/77 (37%), Positives = 36/77 (46%)
Query: 2 VSEANPNPNYRKPLNAYHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLES 61
+S+ PN P G + FPY PY Q M + L+R Q + ES
Sbjct: 1 MSQYTPNQRLDTP------GAQEFGFPYSPYEIQEQLMQELFQVLERGQV-----GIFES 49
Query: 62 PTGTGKSLSLLCSTLAW 78
PTGTGKSL+L C L W
Sbjct: 50 PTGTGKSLTLTCGALTW 66
Score = 40 (19.1 bits), Expect = 6.6e-22, Sum P(3) = 6.6e-22
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 718 KSIKQYDSFDASLEGLKSFFRDVKG 742
K ++Q + + ++ G KS FR+V G
Sbjct: 685 KYLEQSGTLE-TISGRKSVFREVSG 708
>UNIPROTKB|E2RGR5 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030496 "midbody" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0000922 "spindle
pole" evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AAEX03015316
Ensembl:ENSCAFT00000024894 Uniprot:E2RGR5
Length = 908
Score = 183 (69.5 bits), Expect = 4.0e-32, Sum P(4) = 4.0e-32
Identities = 54/202 (26%), Positives = 92/202 (45%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ ++ W ++G +RL +K +F EPK +Q E VL Y I KC
Sbjct: 712 YEYQRQVYAHWDKSGLLARLAVRKKIFQEPKRANQ--VEQVLMEYSRCI----KCCGQAG 765
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY- 658
G L+ + + + + L C ++VG+P+PNI ++ K Y D
Sbjct: 766 GTVT--GALLLSVVGGKMSEGINFSDDLGRC--VVMVGMPYPNIKSPELQEKMAYLDQTL 821
Query: 659 -RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
R G N +A+NQ+IGR IRH+ D+ +I+LLD+R+ + W+R
Sbjct: 822 PRVPGQPPPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPILEKLPAWIR 881
Query: 718 KSIKQYDSFDASLEGLKSFFRD 739
++ +F + ++ F R+
Sbjct: 882 DRVEVRATFGPAFATMRKFHRE 903
Score = 157 (60.3 bits), Expect = 4.0e-32, Sum P(4) = 4.0e-32
Identities = 42/139 (30%), Positives = 68/139 (48%)
Query: 184 NKYVRDKENIDEEC-KLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQ 242
+K+ K +EE K + CP F N +++ L+ V DIE LV +G+
Sbjct: 291 SKHGSHKNRAEEEKPKRRRQEHQAACP-FYNYEQLQ---LLRDQVLVGVKDIEQLVALGK 346
Query: 243 VVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDA 302
R C YY +R AQLV PY +++ R A + ++G ++++DEAHN+ D
Sbjct: 347 EARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQVVVIDEAHNLIDTITGI 406
Query: 303 GSVDIDEDVLLKLQMELEQ 321
SV++ L + +L Q
Sbjct: 407 HSVEVSGSQLCQAHSQLLQ 425
Score = 126 (49.4 bits), Expect = 4.0e-32, Sum P(4) = 4.0e-32
Identities = 30/84 (35%), Positives = 43/84 (51%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+G I FP+ PY Q FM + L+ A + G + ESPTGTGKSLS++C L+W
Sbjct: 8 IGDIHFPFPFTPYSIQKDFMAELYRVLE-AGKIG----IFESPTGTGKSLSVICGALSWL 62
Query: 80 QNCKLKNQLANISHSKPDTEAVTD 103
++ + K K T + D
Sbjct: 63 RDFEQKKHQEEARLLKAGTTPLND 86
Score = 86 (35.3 bits), Expect = 7.4e-25, Sum P(4) = 7.4e-25
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVRDKENIDEECKLLLGD 203
I+Y SRTHSQ++Q + E +++ + + L SR++ C N+ V+ ++ L+ D
Sbjct: 229 IYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNEDVKTLGSVQ-----LIND 283
Query: 204 RNLGCPQFKN-VHKVRGHPSLQK 225
R + + K+ HK R K
Sbjct: 284 RCMEMQRSKHGSHKNRAEEEKPK 306
Score = 79 (32.9 bits), Expect = 4.0e-32, Sum P(4) = 4.0e-32
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 596 SLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVI 655
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L +I +GP + L +Y+ + ++M++ LCN
Sbjct: 656 PPD-NILPLIICSGPSSQQLEFTYQKRELPQMMDETGRILCN 696
Score = 40 (19.1 bits), Expect = 6.1e-14, Sum P(3) = 6.1e-14
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 1074 VMDKTLQISCSLC 1086
+MD+T +I C+LC
Sbjct: 686 MMDETGRILCNLC 698
>WB|WBGene00010839 [details] [associations]
symbol:chl-1 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 HOGENOM:HOG000241266
OMA:NLGRCVV GeneTree:ENSGT00530000063199 EMBL:Z49128
RefSeq:NP_499295.2 ProteinModelPortal:Q21489 SMR:Q21489
STRING:Q21489 PaxDb:Q21489 EnsemblMetazoa:M03C11.2 GeneID:176457
KEGG:cel:CELE_M03C11.2 UCSC:M03C11.2 CTD:176457 WormBase:M03C11.2
InParanoid:Q21489 NextBio:892664 Uniprot:Q21489
Length = 830
Score = 178 (67.7 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 38/107 (35%), Positives = 58/107 (54%)
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHR 690
R IV+G+P+PN +++ + K+ DT + GN Y + A+NQAIGR IRHR
Sbjct: 722 RAVIVIGLPYPNKTSVELRERMKFLDTQMPN----GGNLLYESLCMHAVNQAIGRAIRHR 777
Query: 691 FDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFF 737
DY A+ L D+R+ +E R +S W+ + F + +SFF
Sbjct: 778 RDYAAVYLFDDRYAKESTRRKLSTWIGDRTQVKLGFGEIIRKTRSFF 824
Score = 122 (48.0 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 24/78 (30%), Positives = 43/78 (55%)
Query: 241 GQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIAR 300
G++ GC Y+A R QLV PY +++ R A +++K +++LDEAHN+ +
Sbjct: 302 GKLSNGCPYFATRKSVPQCQLVLLPYQVLLHDGTRKAWGIELKDNVIVLDEAHNVLNTIS 361
Query: 301 DAGSVDID-EDVLLKLQM 317
S +I + + L L++
Sbjct: 362 SLYSAEISTKSLTLALRL 379
Score = 121 (47.7 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 24 QVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCK 83
+ FP+QPY QL M + +++ ++ G + ESPTGTGKSLS+LCST+ W + +
Sbjct: 3 EFSFPFQPYDIQLNLMREIRQCIEQ-RKIG----IFESPTGTGKSLSVLCSTMTWLEAEE 57
Query: 84 LK 85
L+
Sbjct: 58 LR 59
Score = 114 (45.2 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 38/103 (36%), Positives = 53/103 (51%)
Query: 146 IFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKYVRD-KEN--IDEECKLLLG 202
IFYASRTHSQ+ Q+ E KT ++ + ASR C N+ V+ K N I+E+C L
Sbjct: 186 IFYASRTHSQLEQLAEELAKTRFQPRIVTCASRGTLCVNEEVKKLKLNHLINEKCMEL-- 243
Query: 203 DRNLGCPQFKNVHKV-RGHPSLQKG---GC--HEVHDIEDLVN 239
R G + + V K+ +G K C + IED+VN
Sbjct: 244 -RKNGMSEKEKVQKLEKGTTKKTKTCATSCEFYNSTQIEDVVN 285
Score = 47 (21.6 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 508 HVIDVDLQVLTSVISTGPDNYPLNASYKT 536
HVID D Q+L + D P +Y+T
Sbjct: 591 HVID-DSQLLAVTVERTVDGKPFQLTYQT 618
Score = 39 (18.8 bits), Expect = 6.9e-31, Sum P(5) = 6.9e-31
Identities = 14/60 (23%), Positives = 23/60 (38%)
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPK 570
D L+ L + I + P N Y + + +E G R+ KK +F E +
Sbjct: 622 DTTLRSLATSIQALIPHIP-NGVVIFVPSYDFLFNFQKKMKEFGILKRIEEKKAVFTESR 680
>TAIR|locus:2017894 [details] [associations]
symbol:AT1G79890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 EMBL:AC011717
UniGene:At.18069 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 HOGENOM:HOG000241266 OMA:NLGRCVV IPI:IPI00530666
PIR:A96830 RefSeq:NP_178107.1 UniGene:At.66890
ProteinModelPortal:Q9CA92 SMR:Q9CA92 STRING:Q9CA92 PaxDb:Q9CA92
PRIDE:Q9CA92 EnsemblPlants:AT1G79890.1 GeneID:844328
KEGG:ath:AT1G79890 TAIR:At1g79890 InParanoid:Q9CA92
PhylomeDB:Q9CA92 ProtClustDB:CLSN2681868 Genevestigator:Q9CA92
Uniprot:Q9CA92
Length = 882
Score = 172 (65.6 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 36/111 (32%), Positives = 62/111 (55%)
Query: 187 VRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRG 246
V K+N+ +++ + CP + HK++ + E DIEDLV +G+ +R
Sbjct: 252 VSKKKNLGANVRIVRTKASCRCPMLRK-HKLQREFKAESFQ-QEAMDIEDLVQLGREMRT 309
Query: 247 CSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIED 297
C YY +R MA A LV PY +++ R ++ + +K +++I+DEAHN+ D
Sbjct: 310 CPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSLKNSVVIIDEAHNLAD 360
Score = 132 (51.5 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 33/80 (41%), Positives = 44/80 (55%)
Query: 27 FPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKN 86
FPY+PY Q+ FM + LD+ G ++LESPTGTGKSLS++CS L W + K K
Sbjct: 10 FPYKPYSIQIDFMNALYQFLDKG---GV--SMLESPTGTGKSLSIICSALQWLTDRKEKR 64
Query: 87 Q--LANISHSKPDTEAVTDP 104
L SH + +P
Sbjct: 65 NSGLTEESHKVDGNDDEDEP 84
Score = 116 (45.9 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 34/99 (34%), Positives = 50/99 (50%)
Query: 667 GNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNR----AHISKWLRKSIKQ 722
G E+Y N +A+NQ+IGR IRH DY +I+L+D R+ + ++ +H S L K IK
Sbjct: 789 GKEYYENLCMKAVNQSIGRAIRHEKDYASILLVDARYSNDPSKRTSHSHPSNKLPKWIK- 847
Query: 723 YDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDH 761
D S +G R + + K +ENS H
Sbjct: 848 -DRLIYSTKGYGDVHRLLHQFFKHK---NVENSSETNQH 882
Score = 105 (42.0 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTNKYVRDKEN---IDEEC 197
+F+ SRTHSQ+SQ + E +KT + ++ + L SRK+ C N+ V N I+E C
Sbjct: 185 VFFCSRTHSQLSQFVKELRKTVFAKKLKVVCLGSRKNLCINEDVLKLGNVTRINERC 241
Score = 59 (25.8 bits), Expect = 1.1e-31, Sum P(5) = 1.1e-31
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 622 KGASFL-AVCRGKIVVGIPFPNINDIQVSLKKKY 654
+G +F ++CR ++VG+P+P+ +DI++ + K+
Sbjct: 716 EGINFSDSMCRCVVMVGLPYPSPSDIELLERIKH 749
Score = 47 (21.6 bits), Expect = 5.0e-23, Sum P(4) = 5.0e-23
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 1188 ALNFQLLN--KILFYLDRLEI--RIPESGKFKSEAKDSSPITHSAMDKVAAF 1235
+LN +N K+L Y+ I ++ G+ + P+ H M K+ +F
Sbjct: 452 SLNIDNINLVKLLAYIKESNIIHKVSGYGERVAAMLQKDPVAHEEMSKLTSF 503
Score = 45 (20.9 bits), Expect = 2.9e-30, Sum P(5) = 2.9e-30
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 620 NKKGASFLAVCRGKIVVGIPF 640
+++GA LAV GK+ GI F
Sbjct: 700 SERGAIMLAVVGGKVSEGINF 720
Score = 44 (20.5 bits), Expect = 3.2e-12, Sum P(4) = 3.2e-12
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 432 VSDYQLALQKYIKRDSKNPGG 452
++D + L +Y +D +PGG
Sbjct: 130 LNDQEFLLDEYESQDESSPGG 150
Score = 41 (19.5 bits), Expect = 1.2e-09, Sum P(4) = 1.2e-09
Identities = 6/27 (22%), Positives = 17/27 (62%)
Query: 766 DQCKEVTKQNTQELNKSDHSGQNVQSI 792
++C ++ K+ +++K + G NV+ +
Sbjct: 239 ERCLDLQKKKISQVSKKKNLGANVRIV 265
Score = 40 (19.1 bits), Expect = 2.6e-22, Sum P(4) = 2.6e-22
Identities = 8/45 (17%), Positives = 25/45 (55%)
Query: 758 DVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQK 802
++D+++ + + + N ++K G+ V ++ + DP +H++
Sbjct: 454 NIDNINLVKLLAYIKESNI--IHKVSGYGERVAAMLQKDPVAHEE 496
>RGD|1306675 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000922 "spindle pole" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0007062 "sister chromatid cohesion"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 RGD:1306675
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677 GO:GO:0000790
GO:GO:0004003 GO:GO:0030496 GO:GO:0000922 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 GO:GO:0007062
OrthoDB:EOG4B5P4M IPI:IPI00765140 Ensembl:ENSRNOT00000016536
UCSC:RGD:1306675 Uniprot:D3ZT96
Length = 882
Score = 198 (74.8 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 56/202 (27%), Positives = 96/202 (47%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ + ++ W +TG +RL+ +K +F EPK SQ E VL Y I+ C+
Sbjct: 684 YEYLRQVHAHWDKTGLLARLSVRKKIFQEPKRASQ--VEQVLTAYSTCIAS---CSHSEG 738
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY- 658
G L+ + + + + L C ++VG+P+PNI ++ K Y D
Sbjct: 739 HLT---GALLLSVVGGKMSEGINFSDDLGRC--VVMVGMPYPNIKSPELQEKMAYLDQTI 793
Query: 659 -RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
R+ G N +A+NQ+IGR IRH+ D+ +I+LLD R+ A + W+R
Sbjct: 794 PRTHGQPPPGTVLIENLCMKAINQSIGRAIRHQKDFASIVLLDHRYARPSILAKLPAWIR 853
Query: 718 KSIKQYDSFDASLEGLKSFFRD 739
++ +F + ++ F R+
Sbjct: 854 DRVEVKATFGPAFAAMRKFHRE 875
Score = 134 (52.2 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 36/105 (34%), Positives = 51/105 (48%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
+GGI FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 MGGIHFPFPFPPYPIQKDFMAELYKVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPST 124
++ + K A P + P ++G + S P T
Sbjct: 63 RDFEQKKLQAEAGLLAP----ASGPTSSGRNSVLSSSSCQEPSDT 103
Score = 89 (36.4 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 568 SLKFLLLNPAVHFAQVVKECRALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVI 627
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L +I +GP N L +Y+ + ++ME+ LCN
Sbjct: 628 PPD-NILPLIICSGPSNQQLEFTYQRRELPQMMEETGRILCN 668
Score = 85 (35.0 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTNKYVR 188
I+Y SRTHSQ++Q + E +K+ + + L SR+ C N+ V+
Sbjct: 201 IYYCSRTHSQLAQFVREVQKSPFGKETRLVSLGSRQSLCVNEDVK 245
Score = 71 (30.1 bits), Expect = 3.7e-31, Sum P(5) = 3.7e-31
Identities = 24/94 (25%), Positives = 38/94 (40%)
Query: 230 EVHDIEDLVNVGQVVRGCSYYAARSMADDAQ--LVFCPYSYIINPVIRGAMEVDIKGAIL 287
EV D+E LV +G+ + C YY +R AQ LV ++ + + +G
Sbjct: 304 EVKDMEQLVALGKEAQACPYYGSRFAIPAAQQVLVILLLRAVLTWMSLLYVGAXXQGQXX 363
Query: 288 ILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
I DE H D + + L + +L Q
Sbjct: 364 IXDEXHXXXDXXXNIXQXQVCGKQLCQAHSQLLQ 397
Score = 40 (19.1 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 423 YFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDV 472
Y+ SR S QLA ++++ K+P G T +SL V +DV
Sbjct: 202 YYCSRTHS-----QLA--QFVREVQKSPFGKETRLVSLGSRQSLCVNEDV 244
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(5) = 1.2e-14
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 1074 VMDKTLQISCSLCRS-PLG----LPENHLYVRCSVTSSAKAHLVSLLKQRQEL 1121
+M++T +I C+LC P G LP ++ Y+R K L++ L R+++
Sbjct: 658 MMEETGRILCNLCNVVPGGMVCFLP-SYEYLRQVHAHWDKTGLLARLSVRKKI 709
Score = 37 (18.1 bits), Expect = 2.2e-23, Sum P(4) = 2.2e-23
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 151 RTHSQISQVISEYKK 165
+ HSQ+ Q + Y+K
Sbjct: 390 QAHSQLLQYMERYRK 404
>UNIPROTKB|F1SK84 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:CU861969
Ensembl:ENSSSCT00000000809 OMA:HQISKRD Uniprot:F1SK84
Length = 682
Score = 189 (71.6 bits), Expect = 5.6e-29, Sum P(4) = 5.6e-29
Identities = 54/197 (27%), Positives = 90/197 (45%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ ++ W +G +RL +K +F EPK +Q E VLK Y I C
Sbjct: 480 YEYQRQVHAHWDRSGLLARLAVRKKIFQEPKRANQ--VEQVLKEYSRCIKH---CGQAEG 534
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTY- 658
G L+ + + + + L C ++VG+P+PNI ++ K Y D
Sbjct: 535 MVT---GALLLSVVGGKMSEGINFSDSLGRC--VVMVGMPYPNIRSAELQEKMAYLDQTL 589
Query: 659 -RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLR 717
R+ G N +A+NQ+IGR IRH+ D+ +I+LLD+R+ A + W+R
Sbjct: 590 PRAPGQAAPGKALVENLCMKAVNQSIGRAIRHQKDFASIVLLDQRYARPPILAKLPAWIR 649
Query: 718 KSIKQYDSFDASLEGLK 734
++ +F + L+
Sbjct: 650 DRVEVKATFGPAFAALR 666
Score = 152 (58.6 bits), Expect = 5.6e-29, Sum P(4) = 5.6e-29
Identities = 31/89 (34%), Positives = 49/89 (55%)
Query: 233 DIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEA 292
DIE LV +G+ R C YY +R AQLV PY +++ R A + ++G ++++DEA
Sbjct: 108 DIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRLQGQVVLVDEA 167
Query: 293 HNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
HN+ D SV++ L + +L Q
Sbjct: 168 HNLMDTITGIHSVEVSGSQLCQAHSQLLQ 196
Score = 83 (34.3 bits), Expect = 5.6e-29, Sum P(4) = 5.6e-29
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I+Y SRTHSQ++Q + E +++ + + L SR++ C N VR
Sbjct: 2 IYYCSRTHSQLAQFVHEVQRSPFGKDTRLVSLGSRQNLCVNDDVR 46
Score = 83 (34.3 bits), Expect = 5.6e-29, Sum P(4) = 5.6e-29
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
+L LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 364 SLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVI 423
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L VI +GP N L +Y+ + ++M++ LCN
Sbjct: 424 PPD-NILPLVICSGPANQQLEFTYQKRELPQMMDETGRILCN 464
Score = 40 (19.1 bits), Expect = 1.5e-09, Sum P(3) = 1.5e-09
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 1074 VMDKTLQISCSLC 1086
+MD+T +I C+LC
Sbjct: 454 MMDETGRILCNLC 466
>UNIPROTKB|Q96FC9 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0030496 "midbody" evidence=IDA] [GO:0000922
"spindle pole" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IDA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=TAS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=TAS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006987
"activation of signaling protein activity involved in unfolded
protein response" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 Reactome:REACT_116125 GO:GO:0000086 GO:GO:0019048
GO:GO:0005654 GO:GO:0006987 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0051539 GO:GO:0003723
GO:GO:0000790 GO:GO:0000070 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 GO:GO:0000084 GO:GO:0003678 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
CleanEx:HS_CHL1 OMA:NLGRCVV GO:GO:0007062 HOVERGEN:HBG058884
OrthoDB:EOG4B5P4M EMBL:X99583 EMBL:U33833 EMBL:U75967 EMBL:U75968
EMBL:BC050069 EMBL:BC050522 IPI:IPI00012188 IPI:IPI00332293
IPI:IPI00657836 IPI:IPI00658184 IPI:IPI00942296 PIR:G02071
RefSeq:NP_001244073.1 RefSeq:NP_001244074.1 RefSeq:NP_004390.3
RefSeq:NP_689651.1 UniGene:Hs.443960 ProteinModelPortal:Q96FC9
SMR:Q96FC9 IntAct:Q96FC9 MINT:MINT-1371028 STRING:Q96FC9
PhosphoSite:Q96FC9 DMDM:74731686 PaxDb:Q96FC9 PRIDE:Q96FC9
DNASU:1663 Ensembl:ENST00000228264 Ensembl:ENST00000251758
Ensembl:ENST00000350437 Ensembl:ENST00000407793
Ensembl:ENST00000435753 Ensembl:ENST00000542838
Ensembl:ENST00000545668 GeneID:1663 KEGG:hsa:1663 UCSC:uc001rjr.1
UCSC:uc001rjs.1 UCSC:uc001rjt.1 UCSC:uc001rju.1 CTD:1663
GeneCards:GC12P031226 HGNC:HGNC:2736 MIM:601150 MIM:613398
neXtProt:NX_Q96FC9 Orphanet:280558 PharmGKB:PA27201
InParanoid:Q96FC9 PhylomeDB:Q96FC9 GenomeRNAi:1663 NextBio:6842
ArrayExpress:Q96FC9 Bgee:Q96FC9 CleanEx:HS_DDX11
Genevestigator:Q96FC9 GermOnline:ENSG00000013573 Uniprot:Q96FC9
Length = 970
Score = 161 (61.7 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 41/138 (29%), Positives = 70/138 (50%)
Query: 184 NKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQV 243
+++ + K +E+ K ++ CP F N H+ G L+ EV D+E L+ +G+
Sbjct: 291 SRHEKKKGAEEEKPKRRRQEKQAACP-FYN-HEQMG--LLRDEALAEVKDMEQLLALGKE 346
Query: 244 VRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAG 303
R C YY +R AQLV PY +++ R A + ++ ++I+DEAHN+ D
Sbjct: 347 ARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQDQVVIIDEAHNLIDTITGMH 406
Query: 304 SVDIDEDVLLKLQMELEQ 321
SV++ L + +L Q
Sbjct: 407 SVEVSGSQLCQAHSQLLQ 424
Score = 128 (50.1 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
Score = 93 (37.8 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I+Y SRTHSQ++Q + E KK+ + V + L SR++ C N+ V+
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVK 273
Score = 88 (36.0 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 32/117 (27%), Positives = 49/117 (41%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAXXXX 599
Y+ + ++ W + G RL A+K +F EPK Q E VL Y I C
Sbjct: 710 YEYLRQVHAHWEKGGLLGRLAARKKIFQEPKSAHQ--VEQVLLAYSRCIQA---CGQERG 764
Query: 600 XXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYND 656
G L+ + + + + L C ++VG+PFPNI ++ K Y D
Sbjct: 765 QVT---GALLLSVVGGKMSEGINFSDNLGRC--VVMVGMPFPNIRSAELQEKMAYLD 816
Score = 83 (34.3 bits), Expect = 3.4e-28, Sum P(5) = 3.4e-28
Identities = 30/102 (29%), Positives = 46/102 (45%)
Query: 457 TLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL----GVQFGTCLE--APHVI 510
TL LNPAV F V + P++ F +L GV+ +E HVI
Sbjct: 594 TLKFLLLNPAVHFAQVVKECRAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVI 653
Query: 511 DVDLQVLTSVISTGPDNYPLNASYKTADGYKLMEK----LCN 548
D +L VI +G N PL +++ + ++M++ LCN
Sbjct: 654 PPD-NILPLVICSGISNQPLEFTFQKRELPQMMDEVGRILCN 694
Score = 66 (28.3 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 37/175 (21%), Positives = 79/175 (45%)
Query: 687 IRHRFD--YGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSF-FRDVKGW 743
++HR Y A L E +E N +S+ + ++ + + + G + + +
Sbjct: 147 LQHRVQLKYAAKRLRQEE-EERENLLRLSREMLETGPEAERLEQLESGEEELVLAEYESD 205
Query: 744 VGKKMFNGLENSDNDVD--HVSSMDQCKEVTKQNTQ---ELNKSDHSGQNVQSISKYDPF 798
KK+ + ++ ++D++ H++ + C Q Q E+ KS G++V+ +S
Sbjct: 206 EEKKVASRVDEDEDDLEEEHITKIYYCSRTHSQLAQFVHEVKKSPF-GKDVRLVSLG--- 261
Query: 799 SHQKSQGNFEVQTSLQTDQ--NNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKK 851
S Q N +V+ SL + Q N+ C+ D++R + + K R++ K+
Sbjct: 262 SRQNLCVNEDVK-SLGSVQLINDRCV---DMQRSRHEKKKGAEEEKPKRRRQEKQ 312
Score = 37 (18.1 bits), Expect = 4.7e-23, Sum P(5) = 4.7e-23
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 744 VGKKMFNGLENSDN 757
VG KM G+ SDN
Sbjct: 775 VGGKMSEGINFSDN 788
Score = 37 (18.1 bits), Expect = 1.6e-10, Sum P(4) = 1.6e-10
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 353 KREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLS 407
K+E + ++A R+ +E + + + L+ A K +++ + L LS
Sbjct: 120 KKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
>UNIPROTKB|F1MWN6 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 IPI:IPI00905335 EMBL:DAAA02036222
Ensembl:ENSBTAT00000052120 OMA:THEKEDE Uniprot:F1MWN6
Length = 564
Score = 208 (78.3 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 51/164 (31%), Positives = 88/164 (53%)
Query: 172 MAVLASRKHYCTNKYVRDKENIDEE---CKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGC 228
+ VL SR+ C + V+ +E+ + C+ + R+ C + NV + SL++
Sbjct: 3 VCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVASRS--CHFYNNVEE----KSLEQELA 56
Query: 229 HEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILI 288
+ DIEDLV G + C YY +R++ A ++F PY+Y+++ R A +D+KG ++I
Sbjct: 57 TPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDLKGTVVI 116
Query: 289 LDEAHNIEDIARDAGSVDID-EDVLLKLQMELEQVCSVNPMIYQ 331
DEAHN+E + +A S D+ DV L + ++QV + Q
Sbjct: 117 FDEAHNVEKMCEEAASFDLTPHDVASGLDV-IDQVLEERTKVAQ 159
Score = 169 (64.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 69/229 (30%), Positives = 98/229 (42%)
Query: 488 PMNSFSSELGVQFGTCLEAPHVIDV------------DLQVLTSVISTGPDNYPL----- 530
PM SFS E+ + F CLE PHVI+ D L+S + L
Sbjct: 351 PMASFSLEMQIPFPVCLENPHVINQHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGK 410
Query: 531 ---NASYKTADG-------YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
N S G Y +MEK WR +L +KPLFVEP+ S+ F V
Sbjct: 411 VLSNISRVVPHGLLVFFPSYPVMEKSLEFWRARDFTRKLEVRKPLFVEPR--SKGGFSEV 468
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPF 640
++ +Y ++ + + L+ A+ G RG IV G+P+
Sbjct: 469 MEAFYARVAAPESSGAIFLAVCRGKASEGLDF------ADVNG-------RGVIVTGLPY 515
Query: 641 PNINDIQVSLKKKYNDTYRSSKN----LLSGNEWYCNQAFRALNQAIGR 685
P D +V LK ++ D ++ LSG++WY QA RA+NQAIGR
Sbjct: 516 PPRMDPRVLLKMQFLDEMKAQSGAGGQFLSGHDWYRQQASRAVNQAIGR 564
Score = 121 (47.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 27/78 (34%), Positives = 39/78 (50%)
Query: 458 LSLWCLNPAVVFKD-VAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQV 516
LS WC +P ++ V + PM SFS E+ + F CLE PHVI+ Q+
Sbjct: 320 LSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHVINQH-QI 378
Query: 517 LTSVISTGPDNYPLNASY 534
VI GPD L++++
Sbjct: 379 WVGVIPKGPDGAQLSSAF 396
>ASPGD|ASPL0000055138 [details] [associations]
symbol:AN9436 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] InterPro:IPR001945
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 OMA:KDVDGKC EnsemblFungi:CADANIAT00001938
Uniprot:C8VRA9
Length = 791
Score = 167 (63.8 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 64/250 (25%), Positives = 113/250 (45%)
Query: 175 LASRKHYCTNKYV-RDKEN--IDEECKLLLGD-----RNLG-----CPQFKNVHKVRGHP 221
L SRK+ C + V R+K +D C+ L + G C +N+ + H
Sbjct: 108 LTSRKNLCLHPSVKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHN 167
Query: 222 SLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVD 281
+ G V ++ L+N G+ + C Y++AR M ++ Y Y+++P I + +
Sbjct: 168 LVPPG----VFTLDGLLNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKE 223
Query: 282 I-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQV-CSVNPMIYQPLIEMTQD 339
K I++ DEAHNI+++ ++ S+DI ED L K + + + ++ +
Sbjct: 224 FSKDCIVVFDEAHNIDNVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNE 283
Query: 340 LVGWIER-RKATLAKREFQHFFSCWTGDKALRELQEANISR-QCFPILLECATKAIK--- 394
+ +E R+A A+ E Q + D L+E NI R + F L+ + +K
Sbjct: 284 YMKLVEGLREAEQARDEDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRM 343
Query: 395 EATDTESELP 404
+ T T SE P
Sbjct: 344 KVTHTISETP 353
Score = 121 (47.7 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 36/133 (27%), Positives = 66/133 (49%)
Query: 620 NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDTYRSSKNL--------LSGN 668
N +GA V RGK+ GI F + + + + +Y ++ L + N
Sbjct: 589 NGRGALLFCVARGKVSEGIDFDHHYGRAVLCIGVPFQYTESRILKARLEFLRENYRIREN 648
Query: 669 EWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---S 725
++ A R Q +GR +R + DYG ++L D RFQ++RN+ + KW+ +++ + + S
Sbjct: 649 DFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFQKKRNQ--LPKWISQALLESETNLS 706
Query: 726 FDASLEGLKSFFR 738
D ++ K+F R
Sbjct: 707 TDMAVATAKNFLR 719
Score = 116 (45.9 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 29/83 (34%), Positives = 46/83 (55%)
Query: 18 YHVGGIQVEFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+ + + V FPY + Y Q +MC + TLD GHC +LE P+GTGK+++LL +
Sbjct: 3 FFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAG---GHC--VLEMPSGTGKTVTLLSLIV 57
Query: 77 AWQQNCKLKNQLANISHSKPDTE 99
A+QQ+ +L S + + E
Sbjct: 58 AYQQHYPEHRKLIYCSRTMSEIE 80
Score = 55 (24.4 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 458 LSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQ-V 516
L CL+ A+ K V + P+ + LG F T ++ + + + +
Sbjct: 432 LHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLG--FTTVMQESYSMTLARRSF 489
Query: 517 LTSVISTGPDNYPLNASYK 535
L +++ G D +++S++
Sbjct: 490 LPMIVTRGSDQAQISSSFQ 508
Score = 50 (22.7 bits), Expect = 2.3e-24, Sum P(5) = 2.3e-24
Identities = 20/68 (29%), Positives = 34/68 (50%)
Query: 146 IFYASRTHSQISQVISEYKKTA-YRVPM--------AV-LASRKHYCTNKYV-RDKEN-- 192
+ Y SRT S+I + ++E ++ +R A+ L SRK+ C + V R+K
Sbjct: 69 LIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGLTSRKNLCLHPSVKREKSGTV 128
Query: 193 IDEECKLL 200
+D C+ L
Sbjct: 129 VDARCRSL 136
>TAIR|locus:1006230139 [details] [associations]
symbol:AT2G05635 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] EMBL:CP002685 GO:GO:0004386
IPI:IPI00528463 RefSeq:NP_973426.1 UniGene:At.51309
ProteinModelPortal:F4IHC3 EnsemblPlants:AT2G05635.1 GeneID:2745433
KEGG:ath:AT2G05635 PhylomeDB:F4IHC3 Uniprot:F4IHC3
Length = 146
Score = 286 (105.7 bits), Expect = 9.3e-24, P = 9.3e-24
Identities = 60/109 (55%), Positives = 72/109 (66%)
Query: 67 KSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNG 126
+S + CS LAWQQN K + N++HSK EA TDPL +GGGFIPE+Q P S N
Sbjct: 22 QSFNTSCSVLAWQQNYKSRLLKGNLTHSKAAPEAATDPLNHGGGFIPETQQRDTPASINV 81
Query: 127 QTAQVAMXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVL 175
+ A+ A PTI+YASRTHSQI+QVI EY+KT YRVPMAVL
Sbjct: 82 EKAETA----TKKRTKIPTIYYASRTHSQITQVIREYRKTGYRVPMAVL 126
>UNIPROTKB|F1N2P3 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0071817 "MMXD
complex" evidence=IEA] [GO:0060218 "hematopoietic stem cell
differentiation" evidence=IEA] [GO:0048820 "hair follicle
maturation" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0043388 "positive regulation of DNA
binding" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0035315 "hair cell differentiation" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0021510 "spinal cord development" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007568
"aging" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0006915
GO:GO:0043066 GO:GO:0043588 GO:GO:0007059 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
GO:GO:0043388 GO:GO:0008353 GO:GO:0009650 GO:GO:0019907
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 OMA:KDVDGKC IPI:IPI00866827 GO:GO:0033683
GO:GO:0032289 GO:GO:0048820 GeneTree:ENSGT00550000075092
EMBL:DAAA02047375 Ensembl:ENSBTAT00000002680 Uniprot:F1N2P3
Length = 759
Score = 153 (58.9 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 63/243 (25%), Positives = 114/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLGD----- 203
++ +++S Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 85 ELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 144
Query: 204 --RNLGCP--QFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
R+ P +F V G G +++++DL VG+ C Y+ AR A
Sbjct: 145 YQRDSSLPHCRFYEEFDVHGRQVPLPTG---IYNLDDLKAVGRRQGWCPYFLARYSILHA 201
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 202 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQAN 261
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L E + LV + R+A+ A+ H + D+ L+E
Sbjct: 262 LETLQKTVLRIKETDEQRLREEYRRLVEGL--REASAARETDAHLANPVLPDEVLKEAVP 319
Query: 375 ANI 377
+I
Sbjct: 320 GSI 322
Score = 118 (46.6 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 3 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 57
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 58 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLP 102
Score = 113 (44.8 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 580 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 639
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 640 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEH 699
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 700 LTDANLNLTVDEGVQVAKYFLRQM 723
Score = 62 (26.9 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 541 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 590
Score = 57 (25.1 bits), Expect = 6.7e-05, Sum P(3) = 6.7e-05
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKK--TAY------RV 170
PS G+T + M + Y SRT +I +VI E +K + Y ++
Sbjct: 42 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKL 101
Query: 171 PMAVLA--SRKHYCTNKYV---RDKENIDEECKLL 200
P LA SRK+ C + V R +++D +C L
Sbjct: 102 PFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSL 136
>UNIPROTKB|A6QLJ0 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase
II carboxy-terminal domain kinase activity" evidence=ISS]
[GO:0071817 "MMXD complex" evidence=ISS] [GO:0005819 "spindle"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISS] [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0000075 "cell cycle checkpoint" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0007059 GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0000075
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 KO:K10844 EMBL:BC147982 IPI:IPI00866827
RefSeq:NP_001096787.1 UniGene:Bt.4215 STRING:A6QLJ0 PRIDE:A6QLJ0
GeneID:100125238 KEGG:bta:100125238 CTD:2068 HOVERGEN:HBG051498
NextBio:20788783 GO:GO:0033683 Uniprot:A6QLJ0
Length = 760
Score = 153 (58.9 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 63/243 (25%), Positives = 114/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLGD----- 203
++ +++S Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 204 --RNLGCP--QFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
R+ P +F V G G +++++DL VG+ C Y+ AR A
Sbjct: 146 YQRDSSLPHCRFYEEFDVHGRQVPLPTG---IYNLDDLKAVGRRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQAN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L E + LV + R+A+ A+ H + D+ L+E
Sbjct: 263 LETLQKTVLRIKETDEQRLREEYRRLVEGL--REASAARETDAHLANPVLPDEVLKEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 118 (46.6 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLP 103
Score = 113 (44.8 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 581 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 641 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEH 700
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 701 LTDANLNLTVDEGVQVAKYFLRQM 724
Score = 62 (26.9 bits), Expect = 3.1e-22, Sum P(4) = 3.1e-22
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 542 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 591
Score = 57 (25.1 bits), Expect = 6.8e-05, Sum P(3) = 6.8e-05
Identities = 27/95 (28%), Positives = 42/95 (44%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKK--TAY------RV 170
PS G+T + M + Y SRT +I +VI E +K + Y ++
Sbjct: 43 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKL 102
Query: 171 PMAVLA--SRKHYCTNKYV---RDKENIDEECKLL 200
P LA SRK+ C + V R +++D +C L
Sbjct: 103 PFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSL 137
>ASPGD|ASPL0000038959 [details] [associations]
symbol:AN10414 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:BN001306 GO:GO:0004003
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
EnsemblFungi:CADANIAT00009590 Uniprot:C8VHC2
Length = 841
Score = 188 (71.2 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 48/123 (39%), Positives = 70/123 (56%)
Query: 631 RGKIVVGIPFPNINDIQVSLKKKYND--TYRS-------SKNL---LSGNEWYCNQAFRA 678
RG ++VG+PFPNI K KY + YR+ S+ L +G ++Y N RA
Sbjct: 713 RGVLIVGLPFPNIRSPVWQAKIKYIEQKAYRNVGSGSEESRRLSAKAAGRDFYENACMRA 772
Query: 679 LNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS-IKQYDSFDAS--LEGLKS 735
+NQ IGR IRHR DY AI+L+D+R+ + A + W+++S +K A+ L+GL
Sbjct: 773 VNQCIGRAIRHRNDYAAIVLIDKRYGKTSIEAKLPGWIKQSLVKDSALLPAATTLDGLAC 832
Query: 736 FFR 738
FFR
Sbjct: 833 FFR 835
Score = 134 (52.2 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 56/189 (29%), Positives = 78/189 (41%)
Query: 146 IFYASRTHSQISQVISEYKKTAY--------------------RVPMAVLASRKHYCTNK 185
IFY SRTHSQ+ Q SE ++ R+ L SRK+ C N
Sbjct: 197 IFYCSRTHSQLMQFASELRRVTMPSTLPESLRQGLTDEEEQGERIKHISLGSRKNLCINS 256
Query: 186 YVRDKEN---IDEECKLLLGDRN----LGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLV 238
V N I+E C L L N L C S + V DIEDL
Sbjct: 257 RVAALGNPTAINERC-LELQQPNTPAPLRCSYLPTEEDEAKTLSFRDHALATVKDIEDLG 315
Query: 239 NVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDI 298
+G+ + C YYA+R + ++ R A+ + IKG ++I+DEAHN+ D
Sbjct: 316 KLGKKLGLCPYYASRGVVSHSERS-----------ARDALNLSIKGHVVIIDEAHNLMDA 364
Query: 299 ARDAGSVDI 307
+ SV +
Sbjct: 365 ISNIHSVTV 373
Score = 74 (31.1 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLL-CSTLAWQQN 81
PY PY Q+ FM + L+ +G A+ ESPTG+G L ++ S W +N
Sbjct: 20 PYTPYDIQVRFMQSLYECLE----EGKV-AIFESPTGSGPRLQIIELSCTDWTRN 69
Score = 41 (19.5 bits), Expect = 2.7e-21, Sum P(4) = 2.7e-21
Identities = 11/50 (22%), Positives = 20/50 (40%)
Query: 447 SKNPGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSEL 496
+K PG H + L+P F+++ E PM+ + + L
Sbjct: 510 TKTPGDIQLHYM---LLDPTNHFREIVEDARAVILAGGTMSPMSDYLNHL 556
Score = 38 (18.4 bits), Expect = 7.2e-12, Sum P(3) = 7.2e-12
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 281 DIKGAILILDEAHNIEDIARDAGSV 305
DI+ ++LD ++ +I DA +V
Sbjct: 515 DIQLHYMLLDPTNHFREIVEDARAV 539
>UNIPROTKB|F1PMH9 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
OMA:KDVDGKC GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000007249 Uniprot:F1PMH9
Length = 771
Score = 150 (57.9 bits), Expect = 4.6e-21, Sum P(4) = 4.6e-21
Identities = 63/243 (25%), Positives = 114/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ ++++ Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 98 ELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQ 157
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F V G G +++++DL +GQ C Y+ AR A
Sbjct: 158 YQQDSSLPHCRFYEEFDVHGRQVPLPAG---IYNLDDLKALGQRQGWCPYFLARYSILHA 214
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV+I L + Q
Sbjct: 215 NVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGN 274
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L E + LV + R+A+ A+ H + D+ L+E
Sbjct: 275 LETLQKTVLRIKETDEQRLREEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 332
Query: 375 ANI 377
+I
Sbjct: 333 GSI 335
Score = 120 (47.3 bits), Expect = 4.6e-21, Sum P(4) = 4.6e-21
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 14 PLNAYHVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLL 72
P +V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL
Sbjct: 11 PAARLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLL 65
Query: 73 CSTLAWQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+A+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 66 ALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLP 115
Score = 103 (41.3 bits), Expect = 4.6e-21, Sum P(4) = 4.6e-21
Identities = 37/145 (25%), Positives = 64/145 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPN-INDIQVSLKKKYNDTYRSSKNLLSGNE 669
+E + A N +GA L+V RGK+ GI F + + Y Y S+ L + E
Sbjct: 593 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPY--VYTQSRILKARLE 650
Query: 670 WYCNQ-----------AFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRK 718
+ +Q A R Q +G IR + DYG ++ D+RF R + +W+++
Sbjct: 651 YLRDQFQIRNDFLTLDAMRHAAQCVGGAIRGKTDYGLMVFADKRFARADKRGKLPRWIQE 710
Query: 719 SIKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 711 HLTDANLNLTVDEGVQVAKYFLRQM 735
Score = 62 (26.9 bits), Expect = 4.6e-21, Sum P(4) = 4.6e-21
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 554 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 603
Score = 56 (24.8 bits), Expect = 0.00094, Sum P(3) = 0.00094
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTA--Y------RV 170
PS G+T + M + Y SRT +I +VI E +K Y ++
Sbjct: 55 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKL 114
Query: 171 PMAVLA--SRKHYCTNKYV---RDKENIDEECKLL 200
P LA SRK+ C + V R +++D +C L
Sbjct: 115 PFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSL 149
>UNIPROTKB|Q60452 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:10029 "Cricetulus griseus"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005819 "spindle" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0006979
"response to oxidative stress" evidence=ISS] [GO:0007059
"chromosome segregation" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISS] [GO:0035315 "hair cell
differentiation" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0071817 "MMXD complex" evidence=ISS] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0007059
GO:GO:0006979 GO:GO:0006917 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0047485
GO:GO:0000075 GO:GO:0005675 GO:GO:0006283 TIGRFAMs:TIGR00604
GO:GO:0035315 GO:GO:0043139 CTD:2068 HOVERGEN:HBG051498
GO:GO:0033683 EMBL:U04968 EMBL:U04967 PIR:A55732
RefSeq:NP_001231320.1 GeneID:100689272 Uniprot:Q60452
Length = 760
Score = 140 (54.3 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 59/243 (24%), Positives = 113/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ +++S Y++ ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F G G +++++DL +GQ C Y+ AR A
Sbjct: 146 YQQDASLPHCRFYEEFDAHGRQVPLPAG---IYNLDDLKALGQRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
L+ V + Q L + + LV + R+A+ A+ H + D+ L+E
Sbjct: 263 LDTLQKTVLRIKETDEQRLRDEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 118 (46.6 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIVA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLP 103
Score = 113 (44.8 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 581 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 641 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEH 700
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 701 LTDSNLNLTVDEGVQVAKYFLRQM 724
Score = 62 (26.9 bits), Expect = 7.8e-21, Sum P(4) = 7.8e-21
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 542 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 591
Score = 55 (24.4 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 22/68 (32%), Positives = 35/68 (51%)
Query: 146 IFYASRTHSQISQVISEYKK--TAY------RVPMAVLA--SRKHYCTNKYV---RDKEN 192
+ Y SRT +I +VI E +K + Y ++P LA SRK+ C + V R ++
Sbjct: 70 LIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKD 129
Query: 193 IDEECKLL 200
+D +C L
Sbjct: 130 VDGKCHSL 137
>UNIPROTKB|P18074 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0021510 "spinal cord
development" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030282 "bone mineralization"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043249 "erythrocyte maturation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0048820 "hair
follicle maturation" evidence=IEA] [GO:0060218 "hematopoietic stem
cell differentiation" evidence=IEA] [GO:0000441 "SSL2-core TFIIH
complex" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA;TAS] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;NAS;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0005675 "holo TFIIH complex" evidence=IDA;TAS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IMP]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035315 "hair cell differentiation" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007059
"chromosome segregation" evidence=IMP] [GO:0071817 "MMXD complex"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0009650 "UV protection" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=TAS] [GO:0006361 "transcription initiation from
RNA polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006468 "protein
phosphorylation" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0006915 GO:GO:0019048 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0016032 GO:GO:0006979
GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
GO:GO:0007568 GO:GO:0001701 GO:GO:0001666 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0030198 GO:GO:0006468 EMBL:CH471126
GO:GO:0040016 GO:GO:0051539 GO:GO:0009791 GO:GO:0060218
GO:GO:0004003 GO:GO:0035264 GO:GO:0006368 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0006367 GO:GO:0000075
Reactome:REACT_1788 GO:GO:0043388 GO:GO:0009650 GO:GO:0005675
GO:GO:0006370 GO:GO:0000718 GO:GO:0050434 GO:GO:0006363
GO:GO:0006362 GO:GO:0006361 GO:GO:0006283 GO:GO:0008094
eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 Orphanet:1466 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683 EMBL:X52221
EMBL:X52222 EMBL:L47234 EMBL:AY092780 EMBL:BT006883 EMBL:BC108255
EMBL:BC110523 IPI:IPI00029728 IPI:IPI00984321 PIR:S10888
RefSeq:NP_000391.1 RefSeq:NP_001124339.1 UniGene:Hs.487294
ProteinModelPortal:P18074 DIP:DIP-644N STRING:P18074
PhosphoSite:P18074 DMDM:119540 PaxDb:P18074 PRIDE:P18074 DNASU:2068
Ensembl:ENST00000391940 Ensembl:ENST00000391942
Ensembl:ENST00000391945 GeneID:2068 KEGG:hsa:2068 UCSC:uc002pbj.2
GeneCards:GC19M045854 HGNC:HGNC:3434 HPA:CAB005375 MIM:126340
MIM:278730 MIM:601675 MIM:610756 neXtProt:NX_P18074 Orphanet:231256
Orphanet:453 Orphanet:670 Orphanet:276258 Orphanet:220295
PharmGKB:PA27848 InParanoid:P18074 OrthoDB:EOG4BVRT2
PhylomeDB:P18074 ChiTaRS:ERCC2 GenomeRNAi:2068 NextBio:8409
ArrayExpress:P18074 Bgee:P18074 CleanEx:HS_ERCC2
Genevestigator:P18074 GermOnline:ENSG00000104884 GO:GO:0000441
GO:GO:0032289 GO:GO:0048820 Uniprot:P18074
Length = 760
Score = 138 (53.6 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 59/243 (24%), Positives = 113/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ ++++ Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F G G +++++DL +G+ C Y+ AR A
Sbjct: 146 YQHDTSLPHCRFYEEFDAHGREVPLPAG---IYNLDDLKALGRRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L + + LV + R+A+ A+ H + D+ L+E
Sbjct: 263 LETLQKTVLRIKETDEQRLRDEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 116 (45.9 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMRELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLP 103
Score = 112 (44.5 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 581 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 640
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 641 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEH 700
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 701 LTDANLNLTVDEGVQVAKYFLRQM 724
Score = 62 (26.9 bits), Expect = 2.6e-20, Sum P(4) = 2.6e-20
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 542 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 591
Score = 56 (24.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTA--Y------RV 170
PS G+T + M + Y SRT +I +VI E +K Y ++
Sbjct: 43 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKL 102
Query: 171 PMAVLA--SRKHYCTNKYV---RDKENIDEECKLL 200
P LA SRK+ C + V R +++D +C L
Sbjct: 103 PFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSL 137
>MGI|MGI:95413 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent
repair deficiency, complementation group 2" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISO]
[GO:0006289 "nucleotide-excision repair" evidence=ISO;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO;IMP] [GO:0007059
"chromosome segregation" evidence=ISO] [GO:0007568 "aging"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0009650 "UV
protection" evidence=ISO;IMP] [GO:0009791 "post-embryonic
development" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0021510 "spinal cord development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=IMP] [GO:0030198
"extracellular matrix organization" evidence=IMP] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0032289 "central nervous system
myelin formation" evidence=IMP] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IMP] [GO:0035315 "hair cell
differentiation" evidence=ISO;IMP] [GO:0040016 "embryonic cleavage"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO] [GO:0043249 "erythrocyte maturation" evidence=IMP]
[GO:0043388 "positive regulation of DNA binding" evidence=IMP]
[GO:0043588 "skin development" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0048820 "hair follicle maturation" evidence=IMP]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0060218
"hematopoietic stem cell differentiation" evidence=IMP] [GO:0071817
"MMXD complex" evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:95413 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0001666 GO:GO:0045944 GO:GO:0030198
GO:GO:0040016 GO:GO:0051539 GO:GO:0006366 GO:GO:0009791
GO:GO:0060218 GO:GO:0004003 GO:GO:0035264 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0000075 GO:GO:0043388
GO:GO:0008353 GO:GO:0009650 GO:GO:0005675 GO:GO:0019907
GO:GO:0006283 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 EMBL:CH466639 HOGENOM:HOG000205390
KO:K10844 OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
EMBL:U97572 EMBL:AK004652 EMBL:AK082761 IPI:IPI00310721
RefSeq:NP_031975.2 UniGene:Mm.36524 ProteinModelPortal:O08811
SMR:O08811 STRING:O08811 PhosphoSite:O08811 PaxDb:O08811
PRIDE:O08811 Ensembl:ENSMUST00000062831 GeneID:13871 KEGG:mmu:13871
GeneTree:ENSGT00550000075092 InParanoid:Q8C487 NextBio:284788
Bgee:O08811 Genevestigator:O08811 GermOnline:ENSMUSG00000030400
Uniprot:O08811
Length = 760
Score = 146 (56.5 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 59/243 (24%), Positives = 115/243 (47%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ +++S Y++ ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F + G G +++++DL +GQ C Y+ AR A
Sbjct: 146 YQQDASLPHCRFYEEFDIHGRQMPLPAG---IYNLDDLKALGQRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
L+ V + Q L + + LV + R+A++A+ H + D+ L+E
Sbjct: 263 LDTLQKTVLRIKETDEQRLRDEYRRLVEGL--REASVARETDAHLANPVLPDEVLQEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 118 (46.6 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIVA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLP 103
Score = 114 (45.2 bits), Expect = 8.2e-20, Sum P(3) = 8.2e-20
Identities = 68/357 (19%), Positives = 136/357 (38%)
Query: 402 ELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPG-GNWTHTLSL 460
E+ L+ S +TL F++L +++ + + ++ + D + P N L
Sbjct: 387 EIADLADFSPLTLLANFATLVSTYAKG------FTIIIEPF---DDRTPTIAN--PVLHF 435
Query: 461 WCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTS- 519
C++ ++ K V E P++ + L F A + + L
Sbjct: 436 SCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKIL--DFHPVTMATFTMTLARVCLCPM 493
Query: 520 VISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEI 579
+I G D +++ ++T + ++ N E ++A P + S + E
Sbjct: 494 IIGRGNDQVAISSKFETREDIAVIRNYGNLLLE------MSAVVPDGIVAFFTSYQYMES 547
Query: 580 VLKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENA--NKKGASFLAVCRGKIVVG 637
+ +Y + +G +E + A N +GA L+V RGK+ G
Sbjct: 548 TVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEG 607
Query: 638 IPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEWYCNQAFRALNQAIGRC 686
I F + I + Y + Y + + N++ A R Q +GR
Sbjct: 608 IDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRA 667
Query: 687 IRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---SFDASLEGLKSFFRDV 740
IR + DYG ++ D+RF R + +W+++ + + + D ++ K F R +
Sbjct: 668 IRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYFLRQM 724
>RGD|1309109 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent repair
deficiency, complementation group 2" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000441 "SSL2-core TFIIH complex" evidence=IDA] [GO:0001666
"response to hypoxia" evidence=IEP] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006917 "induction of apoptosis" evidence=IEA;ISO] [GO:0006979
"response to oxidative stress" evidence=IEA;ISO] [GO:0007059
"chromosome segregation" evidence=IEA;ISO] [GO:0007568 "aging"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA;ISO] [GO:0009411 "response to
UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0009791 "post-embryonic development" evidence=IEA;ISO]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0021510 "spinal cord
development" evidence=IEA;ISO] [GO:0022405 "hair cycle process"
evidence=ISO] [GO:0030198 "extracellular matrix organization"
evidence=IEA;ISO] [GO:0030282 "bone mineralization"
evidence=IEA;ISO] [GO:0032289 "central nervous system myelin
formation" evidence=IEA;ISO] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA;ISO] [GO:0035264 "multicellular
organism growth" evidence=IEA;ISO] [GO:0035315 "hair cell
differentiation" evidence=IEA;ISO] [GO:0040016 "embryonic cleavage"
evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IEA;ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA;ISO] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA;ISO] [GO:0043588 "skin development" evidence=IEA;ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0047485
"protein N-terminus binding" evidence=IEA;ISO] [GO:0048820 "hair
follicle maturation" evidence=IEA;ISO] [GO:0060218 "hematopoietic
stem cell differentiation" evidence=IEA;ISO] [GO:0071817 "MMXD
complex" evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 RGD:1309109 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0008283 GO:GO:0007568 GO:GO:0001701
GO:GO:0001666 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
EMBL:CH473979 GO:GO:0043388 GO:GO:0008353 GO:GO:0009650
GO:GO:0019907 GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 KO:K10844 CTD:2068 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
GeneTree:ENSGT00550000075092 IPI:IPI00367025 RefSeq:NP_001166280.1
UniGene:Rn.41871 Ensembl:ENSRNOT00000024246 GeneID:308415
KEGG:rno:308415 NextBio:658821 Uniprot:D3ZEG9
Length = 760
Score = 140 (54.3 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 59/243 (24%), Positives = 113/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ +++S Y++ ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F G G +++++DL +GQ C Y+ AR A
Sbjct: 146 YQQDASLPHCRFYEEFDTHGRQVPLPAG---IYNLDDLKALGQRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 203 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQSN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
L+ V + Q L + + LV + R+A+ A+ H + D+ L+E
Sbjct: 263 LDTLQKTVLRIKETDEQRLRDEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 118 (46.6 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIVA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLP 103
Score = 114 (45.2 bits), Expect = 3.6e-19, Sum P(3) = 3.6e-19
Identities = 67/356 (18%), Positives = 135/356 (37%)
Query: 402 ELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLW 461
E+ L+ S +TL F++L +++ + + ++ + D + P L
Sbjct: 387 EIADLADFSPLTLLANFATLVSTYAKG------FTIIIEPF---DDRTPTIT-NPILHFS 436
Query: 462 CLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVIDVDLQVLTS-V 520
C++ ++ K V E P++ + L F A + + L +
Sbjct: 437 CMDASLAIKPVFERFQSVIITSGTLSPLDIYPKIL--DFHPVTMATFTMTLARVCLCPMI 494
Query: 521 ISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIV 580
I G D +++ ++T + ++ N E ++A P + S + E
Sbjct: 495 IGRGNDQVAISSKFETREDIAVIRNYGNLLLE------MSAVVPDGIVAFFTSYQYMEST 548
Query: 581 LKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENA--NKKGASFLAVCRGKIVVGI 638
+ +Y + +G +E + A N +GA L+V RGK+ GI
Sbjct: 549 VASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGI 608
Query: 639 PFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEWYCNQAFRALNQAIGRCI 687
F + I + Y + Y + + N++ A R Q +GR I
Sbjct: 609 DFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAI 668
Query: 688 RHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---SFDASLEGLKSFFRDV 740
R + DYG ++ D+RF R + +W+++ + + + D ++ K F R +
Sbjct: 669 RGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAKYFLRQM 724
>SGD|S000000973 [details] [associations]
symbol:RAD3 "5' to 3' DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0000439 "core TFIIH complex"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0000990 "core RNA polymerase
binding transcription factor activity" evidence=IC] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IMP] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
SGD:S000000973 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0046872
GO:GO:0003684 GO:GO:0051539 GO:GO:0006366 EMBL:BK006939 EMBL:U18922
RefSeq:NP_011098.3 GeneID:856918 KEGG:sce:YER171W GO:GO:0070816
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC GO:GO:0033683
GO:GO:0043141 GeneTree:ENSGT00550000075092 GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0000019 OrthoDB:EOG4G1QQH
EMBL:X02368 EMBL:K03293 PIR:A23308 RefSeq:NP_011102.3
ProteinModelPortal:P06839 DIP:DIP-2425N IntAct:P06839
MINT:MINT-617451 STRING:P06839 PaxDb:P06839 PeptideAtlas:P06839
EnsemblFungi:YER171W GeneID:856922 KEGG:sce:YER175C CYGD:YER171w
NextBio:983374 Genevestigator:P06839 GermOnline:YER171W
Uniprot:P06839
Length = 778
Score = 133 (51.9 bits), Expect = 4.8e-19, Sum P(5) = 4.8e-19
Identities = 44/189 (23%), Positives = 87/189 (46%)
Query: 619 ANKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSG 667
+N +GA L+V RGK+ GI F + + + + +Y ++ + +
Sbjct: 591 SNGRGAILLSVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRE 650
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD--- 724
N++ A R Q +GR +R + DYG ++L D RF R R+ + KW+ + + D
Sbjct: 651 NDFLSFDAMRHAAQCLGRVLRGKDDYGVMVLADRRFS--RKRSQLPKWIAQGLSDADLNL 708
Query: 725 SFDASLEGLKSFFRDVKGWVGKKMFNGLE--NSDNDVDHVSSM-DQCKEVTKQNTQELNK 781
S D ++ K F R + K G+ + ++ + H +S DQ + +N +E +
Sbjct: 709 STDMAISNTKQFLRTMAQPTDPKDQEGVSVWSYEDLIKHQNSRKDQGGFIENEN-KEGEQ 767
Query: 782 SDHSGQNVQ 790
+ ++++
Sbjct: 768 DEDEDEDIE 776
Score = 131 (51.2 bits), Expect = 4.8e-19, Sum P(5) = 4.8e-19
Identities = 40/154 (25%), Positives = 74/154 (48%)
Query: 175 LASRKHYCTNKYV-RDKEN--IDEECKLLLGD---RNLG---------CPQFKNVHKVRG 219
L SRK+ C + V ++++ +DE+C+ + R L C +N++ +
Sbjct: 108 LTSRKNLCLHPEVSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEV 167
Query: 220 HPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAME 279
L KG V E L+ + C Y+ R M ++ Y Y+++P I +
Sbjct: 168 EDYLPKG----VFSFEKLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVS 223
Query: 280 VDI-KGAILILDEAHNIEDIARDAGSVDIDEDVL 312
++ K +I+I DEAHNI+++ ++ S+D+ D L
Sbjct: 224 NEVSKDSIVIFDEAHNIDNVCIESLSLDLTTDAL 257
Score = 108 (43.1 bits), Expect = 4.8e-19, Sum P(5) = 4.8e-19
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 18 YHVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+++ + V FPY Y Q +MC + TLD G+ ++LE P+GTGK++SLL T+
Sbjct: 3 FYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVG---GN--SILEMPSGTGKTVSLLSLTI 57
Query: 77 AWQQNCKLKNQLANISHSKPDTEAVTDPLAN 107
A+Q + ++ S + + E L N
Sbjct: 58 AYQMHYPEHRKIIYCSRTMSEIEKALVELEN 88
Score = 54 (24.1 bits), Expect = 1.8e-11, Sum P(5) = 1.8e-11
Identities = 48/195 (24%), Positives = 81/195 (41%)
Query: 146 IFYASRTHSQISQVISE------Y--KKTAYRVPMAVLA--SRKHYCTNKYV-RDKEN-- 192
I Y SRT S+I + + E Y K+ Y+ L SRK+ C + V ++++
Sbjct: 69 IIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEVSKERKGTV 128
Query: 193 IDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNV---GQVVRGC-S 248
+DE+C+ + Q K K+ P C E H E+L N+ + +G S
Sbjct: 129 VDEKCRRMTNG------QAKR--KLEEDPEANVELC-EYH--ENLYNIEVEDYLPKGVFS 177
Query: 249 YYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDID 308
+ ++ L CPY +I+ +I + I +LD I + R + V D
Sbjct: 178 FEKLLKYCEEKTL--CPY-FIVRRMI-SLCNIIIYSYHYLLDP--KIAE--RVSNEVSKD 229
Query: 309 EDVLLKLQMELEQVC 323
V+ ++ VC
Sbjct: 230 SIVIFDEAHNIDNVC 244
Score = 51 (23.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/50 (32%), Positives = 24/50 (48%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSL 71
G+ V FP Y +V M + + LD + H L+E+P SL+L
Sbjct: 536 GMVVFFPSYLYMESIVSMWQTMGILDEVWK--HKLILVETPDAQETSLAL 583
Score = 43 (20.2 bits), Expect = 4.8e-19, Sum P(5) = 4.8e-19
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 502 TCLEAPHVIDVDLQVLTSVISTG----P-DNYPLNASYKT 536
TCL+A I + +SVI T P D YP ++KT
Sbjct: 438 TCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKT 477
Score = 43 (20.2 bits), Expect = 4.8e-19, Sum P(5) = 4.8e-19
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y ME + + W+ G + K + VE +QE + L+ Y + S G
Sbjct: 544 YLYMESIVSMWQTMGILDEVWKHKLILVETPD-AQET-SLALETYRKACSNG 593
>POMBASE|SPAC1D4.12 [details] [associations]
symbol:rad15 "transcription factor TFIIH complex subunit
Rad15" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IGI]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IGI]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
PomBase:SPAC1D4.12 INTERPRO:IPR013020 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
eggNOG:COG1199 TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC GO:GO:0043141 GO:GO:0000717 GO:GO:0000439 GO:GO:0000112
EMBL:X64583 EMBL:X60499 PIR:S22660 RefSeq:NP_593025.1
ProteinModelPortal:P26659 IntAct:P26659 STRING:P26659
EnsemblFungi:SPAC1D4.12.1 GeneID:2542203 KEGG:spo:SPAC1D4.12
OrthoDB:EOG4G1QQH NextBio:20803273 Uniprot:P26659
Length = 772
Score = 163 (62.4 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 59/223 (26%), Positives = 98/223 (43%)
Query: 175 LASRKHYCTNKYVRDKEN---IDEECKLLLG-----DRNLG-----CPQFKNVHKVRGHP 221
L SRK+ C + VR ++N +D C+ L R G C N+ + H
Sbjct: 108 LTSRKNLCLHPSVRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHS 167
Query: 222 SLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVD 281
+ G V ++D+ G+ C Y+ R M ++ Y Y+++P I + +
Sbjct: 168 LISNG----VWTLDDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRE 223
Query: 282 I-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQ---MELEQ-VCSVNPMIYQPLIEM 336
+ K I++ DEAHNI+++ ++ S+D+ E L K + LEQ V V + L +
Sbjct: 224 LSKDCIVVFDEAHNIDNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDE 283
Query: 337 TQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEANISR 379
Q LV ++ A A E Q + + L+E NI R
Sbjct: 284 YQKLVRGLQ--DANAANDEDQFMANPVLPEDVLKEAVPGNIRR 324
Score = 107 (42.7 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 35/134 (26%), Positives = 62/134 (46%)
Query: 619 ANKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--YRSSKNLLSGN----- 668
+N +GA L+V RGK+ G+ F + I + +Y ++ ++ L
Sbjct: 588 SNGRGAVLLSVARGKVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFLRDTYQIRE 647
Query: 669 -EWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD--- 724
++ A R Q +GR +R + D+G ++L D+R+ R + KW+++ I +
Sbjct: 648 ADFLTFDAMRHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKLPKWIQQYITEGATNL 707
Query: 725 SFDASLEGLKSFFR 738
S D SL K F R
Sbjct: 708 STDMSLALAKKFLR 721
Score = 96 (38.9 bits), Expect = 1.2e-18, Sum P(3) = 1.2e-18
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 18 YHVGGIQVEFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+++ + + FPY + Y Q +MC + +LD G ALLE P+GTGK++SLL +
Sbjct: 3 FYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAG---GI--ALLEMPSGTGKTISLLSLIV 57
Query: 77 AWQQN 81
++QQ+
Sbjct: 58 SYQQH 62
Score = 70 (29.7 bits), Expect = 6.2e-09, Sum P(3) = 6.2e-09
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 146 IFYASRTHSQISQVISEYKKT-AYRV-------PMAVLA--SRKHYCTNKYVRDKEN--- 192
+ Y SRT S+I + ++E K+ AYR P L SRK+ C + VR ++N
Sbjct: 69 LIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSVRREKNGNV 128
Query: 193 IDEECKLL 200
+D C+ L
Sbjct: 129 VDARCRSL 136
>ZFIN|ZDB-GENE-040426-997 [details] [associations]
symbol:ercc2 "excision repair cross-complementing
rodent repair deficiency, complementation group 2" species:7955
"Danio rerio" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 ZFIN:ZDB-GENE-040426-997
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
GO:GO:0006289 TIGRFAMs:TIGR00604 GeneTree:ENSGT00550000075092
EMBL:CR855332 EMBL:JN172105 IPI:IPI00495155 UniGene:Dr.5152
Ensembl:ENSDART00000141618 Uniprot:F1Q5E7
Length = 760
Score = 129 (50.5 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 27/91 (29%), Positives = 53/91 (58%)
Query: 231 VHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILIL 289
+++++DL + G+ C Y+ AR A +V Y Y+++P I + ++ K ++++
Sbjct: 174 IYNLDDLKDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVF 233
Query: 290 DEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
DEAHNI+++ D+ SV+I L + Q +E
Sbjct: 234 DEAHNIDNVCIDSMSVNITRRTLDRCQTNVE 264
Score = 119 (46.9 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 84/426 (19%), Positives = 165/426 (38%)
Query: 334 IEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALREL-QEANISRQCFPILLECATKA 392
I + VG+++R L R H + + L+++ ++ I R+ P+ CA +
Sbjct: 323 IRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKDIFEKVCIDRK--PLRF-CAER- 378
Query: 393 IKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPG- 451
++ T E+ ++ S ITL F++L +S+ + + ++ + + K P
Sbjct: 379 LRSLLRT-LEIADIADFSPITLISHFATLVSTYSKG------FTIIIEPF---EDKTPTI 428
Query: 452 GNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVID 511
N L C++P++ K V P++ + L F A +
Sbjct: 429 AN--PVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRIL--DFRPVTMASFTMT 484
Query: 512 VDLQVLTS-VISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPK 570
+ L ++ G D + + ++T + + ++ N E ++A P +
Sbjct: 485 LARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLE------MSAIVPDGIVAF 538
Query: 571 GGSQEDFE-IVLKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENA-NKKGASFLA 628
S E IV Y I + + + + QE N +GA L+
Sbjct: 539 FTSYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLS 598
Query: 629 VCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEWYCNQAFR 677
V RGK+ GI F + I + Y + Y + + N++ A R
Sbjct: 599 VARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMR 658
Query: 678 ALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---SFDASLEGLK 734
Q +GR IR + DYG +I D+R+ R + +W+++ + + D +++ K
Sbjct: 659 HAAQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSK 718
Query: 735 SFFRDV 740
F R +
Sbjct: 719 HFLRQM 724
Score = 115 (45.5 bits), Expect = 3.4e-18, Sum P(3) = 3.4e-18
Identities = 32/89 (35%), Positives = 49/89 (55%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
++ G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NIDGLLVYFPYDYIYPEQYSYMLELKRTLDAK---GH--GVLEMPSGTGKTISLLSLIVA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPL 105
+Q+ L+ +L S + P+ E V + L
Sbjct: 59 YQKTYPLEVTKLVYCSRTVPEIEKVVEEL 87
Score = 48 (22.0 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 20/68 (29%), Positives = 31/68 (45%)
Query: 146 IFYASRTHSQISQVISEYKKTA--YRVPMAV--------LASRKHYCTNKYV---RDKEN 192
+ Y SRT +I +V+ E +K Y V L+SRK+ C + V R +
Sbjct: 70 LVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPEVSSLRFGKE 129
Query: 193 IDEECKLL 200
+D +C L
Sbjct: 130 VDGKCHSL 137
>UNIPROTKB|A8MX75 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 HOVERGEN:HBG051498
EMBL:L47234 HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00442420
ProteinModelPortal:A8MX75 STRING:A8MX75 PRIDE:A8MX75
Ensembl:ENST00000391941 ArrayExpress:A8MX75 Bgee:A8MX75
Uniprot:A8MX75
Length = 706
Score = 138 (53.6 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 59/243 (24%), Positives = 113/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ ++++ Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 62 ELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 121
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F G G +++++DL +G+ C Y+ AR A
Sbjct: 122 YQHDTSLPHCRFYEEFDAHGREVPLPAG---IYNLDDLKALGRRQGWCPYFLARYSILHA 178
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 179 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGN 238
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L + + LV + R+A+ A+ H + D+ L+E
Sbjct: 239 LETLQKTVLRIKETDEQRLRDEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 296
Query: 375 ANI 377
+I
Sbjct: 297 GSI 299
Score = 112 (44.5 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 557 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 616
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 617 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEH 676
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 677 LTDANLNLTVDEGVQVAKYFLRQM 700
Score = 93 (37.8 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 52 DGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLK-NQLANISHSKPDTEAVTDPLANGGG 110
D H +LE P+GTGK++SLL +A+Q+ L+ +L S + P+ E V + L
Sbjct: 9 DAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLN 68
Query: 111 FIPESQPSTIP 121
F + + +P
Sbjct: 69 FYEKQEGEKLP 79
Score = 62 (26.9 bits), Expect = 3.7e-18, Sum P(4) = 3.7e-18
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 518 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 567
Score = 56 (24.8 bits), Expect = 8.3e-05, Sum P(3) = 8.3e-05
Identities = 27/95 (28%), Positives = 41/95 (43%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTA--Y------RV 170
PS G+T + M + Y SRT +I +VI E +K Y ++
Sbjct: 19 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKL 78
Query: 171 PMAVLA--SRKHYCTNKYV---RDKENIDEECKLL 200
P LA SRK+ C + V R +++D +C L
Sbjct: 79 PFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSL 113
>CGD|CAL0002854 [details] [associations]
symbol:RAD3 species:5476 "Candida albicans" [GO:0003678 "DNA
helicase activity" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
CGD:CAL0002854 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 EMBL:AACQ01000024 GO:GO:0003678
GO:GO:0006289 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K10844
RefSeq:XP_720409.1 RefSeq:XP_888639.1 ProteinModelPortal:Q5AFE9
STRING:Q5AFE9 GeneID:3638014 GeneID:3704106 KEGG:cal:CaO19.7119
KEGG:cal:CaO19_7119 Uniprot:Q5AFE9
Length = 765
Score = 129 (50.5 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 37/136 (27%), Positives = 66/136 (48%)
Query: 619 ANKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDTYRSSKNL--------LSG 667
+N +GA L+V RGK+ GI F + + + + +Y ++ L +
Sbjct: 590 SNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKE 649
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD--- 724
N++ A R Q +GR +R + DYG ++L D RF ++N+ + KW+ +++ D
Sbjct: 650 NDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFARKKNQ--LPKWIAQALNDSDTNL 707
Query: 725 SFDASLEGLKSFFRDV 740
S D +L K F R +
Sbjct: 708 STDMALATAKKFLRSL 723
Score = 120 (47.3 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 36/156 (23%), Positives = 77/156 (49%)
Query: 175 LASRKHYCTNKYV-RDKENI--DEECKLLLGDR-----NLGCP------QF-KNVHKVRG 219
L SRK+ C + + ++++ + DE+C+ + + G P F + ++ +
Sbjct: 108 LTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEP 167
Query: 220 HPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAME 279
H + G V+ + L+ + C Y+ R M ++ Y Y+++P I +
Sbjct: 168 HNLVPPG----VYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVS 223
Query: 280 VDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLK 314
++ K +I+I DEAHNI+++ ++ S+D+ ++ L K
Sbjct: 224 RELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKK 259
Score = 111 (44.1 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 18 YHVGGIQVEFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+ + + V FPY + Y Q +MC + TLD G+C +LE P+GTGK++SLL T+
Sbjct: 3 FFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVG---GNC--ILEMPSGTGKTVSLLSLTV 57
Query: 77 AWQQNCKLKNQLANISHSKPDTE 99
A+Q + ++ S + + E
Sbjct: 58 AYQMHYPEHRKIVYCSRTMSEIE 80
Score = 59 (25.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 17/99 (17%), Positives = 42/99 (42%)
Query: 711 HISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKE 770
H ++ L + ++ D + + + F R K + K + L +SD ++ ++ K+
Sbjct: 660 HAAQCLGRVLRGKDDYGIMVLADRRFARK-KNQLPKWIAQALNDSDTNLSTDMALATAKK 718
Query: 771 VTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEV 809
+ Q N D G ++ +I + + Q + ++
Sbjct: 719 FLRSLAQPTNPKDSEGVSIWNIEQLQEYQQQFQKDEMDI 757
Score = 47 (21.6 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 146 IFYASRTHSQISQVISE-YKKTAYRVPMAV---------LASRKHYCTNKYV-RDKENI- 193
I Y SRT S+I + + E +K +R L SRK+ C + + ++++ +
Sbjct: 69 IVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVV 128
Query: 194 -DEECK 198
DE+C+
Sbjct: 129 VDEKCR 134
Score = 45 (20.9 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y ME + + W+ G + K + VE +QE + L+ Y + S G
Sbjct: 543 YLYMESIISMWQSMGVLDEVWKHKLILVETPD-AQET-SLALETYRKACSNG 592
>UNIPROTKB|Q5AFE9 [details] [associations]
symbol:RAD3 "Putative uncharacterized protein RAD3"
species:237561 "Candida albicans SC5314" [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 CGD:CAL0002854 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
EMBL:AACQ01000024 GO:GO:0003678 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 RefSeq:XP_720409.1 RefSeq:XP_888639.1
ProteinModelPortal:Q5AFE9 STRING:Q5AFE9 GeneID:3638014
GeneID:3704106 KEGG:cal:CaO19.7119 KEGG:cal:CaO19_7119
Uniprot:Q5AFE9
Length = 765
Score = 129 (50.5 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 37/136 (27%), Positives = 66/136 (48%)
Query: 619 ANKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDTYRSSKNL--------LSG 667
+N +GA L+V RGK+ GI F + + + + +Y ++ L +
Sbjct: 590 SNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKE 649
Query: 668 NEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD--- 724
N++ A R Q +GR +R + DYG ++L D RF ++N+ + KW+ +++ D
Sbjct: 650 NDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFARKKNQ--LPKWIAQALNDSDTNL 707
Query: 725 SFDASLEGLKSFFRDV 740
S D +L K F R +
Sbjct: 708 STDMALATAKKFLRSL 723
Score = 120 (47.3 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 36/156 (23%), Positives = 77/156 (49%)
Query: 175 LASRKHYCTNKYV-RDKENI--DEECKLLLGDR-----NLGCP------QF-KNVHKVRG 219
L SRK+ C + + ++++ + DE+C+ + + G P F + ++ +
Sbjct: 108 LTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEP 167
Query: 220 HPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAME 279
H + G V+ + L+ + C Y+ R M ++ Y Y+++P I +
Sbjct: 168 HNLVPPG----VYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVS 223
Query: 280 VDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLK 314
++ K +I+I DEAHNI+++ ++ S+D+ ++ L K
Sbjct: 224 RELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKK 259
Score = 111 (44.1 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 28/83 (33%), Positives = 46/83 (55%)
Query: 18 YHVGGIQVEFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+ + + V FPY + Y Q +MC + TLD G+C +LE P+GTGK++SLL T+
Sbjct: 3 FFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVG---GNC--ILEMPSGTGKTVSLLSLTV 57
Query: 77 AWQQNCKLKNQLANISHSKPDTE 99
A+Q + ++ S + + E
Sbjct: 58 AYQMHYPEHRKIVYCSRTMSEIE 80
Score = 59 (25.8 bits), Expect = 7.2e-11, Sum P(4) = 7.2e-11
Identities = 17/99 (17%), Positives = 42/99 (42%)
Query: 711 HISKWLRKSIKQYDSFDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKE 770
H ++ L + ++ D + + + F R K + K + L +SD ++ ++ K+
Sbjct: 660 HAAQCLGRVLRGKDDYGIMVLADRRFARK-KNQLPKWIAQALNDSDTNLSTDMALATAKK 718
Query: 771 VTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEV 809
+ Q N D G ++ +I + + Q + ++
Sbjct: 719 FLRSLAQPTNPKDSEGVSIWNIEQLQEYQQQFQKDEMDI 757
Score = 47 (21.6 bits), Expect = 1.3e-10, Sum P(4) = 1.3e-10
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 146 IFYASRTHSQISQVISE-YKKTAYRVPMAV---------LASRKHYCTNKYV-RDKENI- 193
I Y SRT S+I + + E +K +R L SRK+ C + + ++++ +
Sbjct: 69 IVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVV 128
Query: 194 -DEECK 198
DE+C+
Sbjct: 129 VDEKCR 134
Score = 45 (20.9 bits), Expect = 6.4e-18, Sum P(4) = 6.4e-18
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y ME + + W+ G + K + VE +QE + L+ Y + S G
Sbjct: 543 YLYMESIISMWQSMGVLDEVWKHKLILVETPD-AQET-SLALETYRKACSNG 592
>UNIPROTKB|Q91941 [details] [associations]
symbol:ERCC2/XPD "ERCC2/XPD protein" species:8083
"Xiphophorus maculatus" [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006917 "induction of
apoptosis" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0006917 GO:GO:0003677 GO:GO:0004003
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0043139 HOVERGEN:HBG051498
EMBL:U17896 PIR:I51720 ProteinModelPortal:Q91941 Uniprot:Q91941
Length = 760
Score = 126 (49.4 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 26/91 (28%), Positives = 53/91 (58%)
Query: 231 VHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILIL 289
+++++DL + G+ C YY AR A +V Y Y+++P I + ++ K ++++
Sbjct: 174 IYNLDDLKDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVF 233
Query: 290 DEAHNIEDIARDAGSVDIDEDVLLKLQMELE 320
DEAHNI+++ D+ SV+I + + Q ++
Sbjct: 234 DEAHNIDNVCIDSMSVNITRRTVDRCQNNVD 264
Score = 122 (48.0 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 85/428 (19%), Positives = 164/428 (38%)
Query: 334 IEMTQDLVGWIERRKATL-AKREFQHFFSCWTGDKALREL-QEANISRQCFPILLECATK 391
I + VG++ R L A+ QH + + L+++ + I R+ P+ CA +
Sbjct: 323 IRTAEHFVGFLRRFLEYLKARLRVQHVVQ-ESAPQFLKDIFDKVCIDRK--PLRF-CAER 378
Query: 392 AIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSK--N 449
+ E+ ++ S +TL F++L +S+ + + ++ + R N
Sbjct: 379 L--QCLLRTLEIADIADFSAVTLISNFATLVSTYSQG------FTIIIEPFEDRTPTIAN 430
Query: 450 PGGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHV 509
P L C++P++ K V + P++ + L F A
Sbjct: 431 P------VLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRIL--DFRPVTMASFT 482
Query: 510 IDVDLQVLTS-VISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVE 568
+ + L ++ G D L++ ++T + + ++ N E ++A P +
Sbjct: 483 MTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLE------MSAVVPDGIV 536
Query: 569 PKGGSQEDFE-IVLKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENA-NKKGASF 626
S E IV Y I + + + + QE N +GA
Sbjct: 537 AFFTSYVYMENIVASWYEQGILENIQKNKLIFIETQDAAETSMALEKYQEACENGRGAIL 596
Query: 627 LAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEWYCNQA 675
L+V RGK+ GI F + I + Y + Y + + N++ A
Sbjct: 597 LSVARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDA 656
Query: 676 FRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---SFDASLEG 732
R Q +GR IR + DYG +I D+R+ R + +W+++ I + D +++
Sbjct: 657 MRHAAQCLGRAIRGKTDYGLMIFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQL 716
Query: 733 LKSFFRDV 740
K F R +
Sbjct: 717 SKHFLRQM 724
Score = 109 (43.4 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
Identities = 32/89 (35%), Positives = 48/89 (53%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
++ G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NIEGLLVYFPYDYIYPEQYSYMLELKRTLDAK---GH--GVLEMPSGTGKTISLLSLIVA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPL 105
+Q+ L +L S + P+ E V + L
Sbjct: 59 YQRAFPLDVTKLIYCSRTVPEIEKVVEEL 87
Score = 48 (22.0 bits), Expect = 2.3e-11, Sum P(3) = 2.3e-11
Identities = 21/68 (30%), Positives = 33/68 (48%)
Query: 146 IFYASRTHSQISQVISE-------YKKTAYRVP--MAV-LASRKHYCTNKYV---RDKEN 192
+ Y SRT +I +V+ E Y K V +A+ L+SRK+ C + V R +
Sbjct: 70 LIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPEVSSLRFGKE 129
Query: 193 IDEECKLL 200
+D +C L
Sbjct: 130 VDGKCHSL 137
Score = 38 (18.4 bits), Expect = 4.9e-09, Sum P(3) = 4.9e-09
Identities = 18/83 (21%), Positives = 31/83 (37%)
Query: 910 CCEASSMPFSNEDPELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSV 969
C + + F E + LL T + D ++ +S ST Q T +
Sbjct: 366 CIDRKPLRFCAERLQCLL--RTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEPFED 423
Query: 970 HSQSLTNPVRVPSSAQPEMVVTP 992
+ ++ NPV S P + + P
Sbjct: 424 RTPTIANPVLHFSCMDPSIAIKP 446
>FB|FBgn0261850 [details] [associations]
symbol:Xpd "Xeroderma pigmentosum D" species:7227 "Drosophila
melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS;IDA] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISS;IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0009411 "response to UV" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0000439 "core TFIIH complex"
evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0007088
"regulation of mitosis" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 EMBL:AE013599
GO:GO:0005524 GO:GO:0005737 GO:GO:0007088 GO:GO:0009411
GO:GO:0003677 GO:GO:0006367 GO:GO:0006289 GO:GO:0051983
GO:GO:0005675 GO:GO:0005703 GO:GO:0010972 GO:GO:0005705
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC GO:GO:0043141
GeneTree:ENSGT00550000075092 GO:GO:0000439 FlyBase:FBgn0261850
RefSeq:NP_726036.2 UniGene:Dm.718 ProteinModelPortal:Q7KVP9
STRING:Q7KVP9 PRIDE:Q7KVP9 EnsemblMetazoa:FBtr0071576 GeneID:37414
KEGG:dme:Dmel_CG9433 UCSC:CG9433-RA CTD:37414 InParanoid:Q7KVP9
OrthoDB:EOG4FTTFK PhylomeDB:Q7KVP9 GenomeRNAi:37414 NextBio:803510
ArrayExpress:Q7KVP9 Bgee:Q7KVP9 Uniprot:Q7KVP9
Length = 769
Score = 126 (49.4 bits), Expect = 2.2e-17, Sum P(4) = 2.2e-17
Identities = 35/127 (27%), Positives = 62/127 (48%)
Query: 183 TNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQ 242
T Y+R++ +D E + C F+ + G S G V+ I+DL G+
Sbjct: 138 TASYIRERHEMDTETPI--------CQYFEGF-SLEGKESTLPVG---VYSIDDLKEYGR 185
Query: 243 VVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARD 301
C Y+ AR A +V Y Y+++P I + ++ + + ++ DEAHNI+++ D
Sbjct: 186 SRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCID 245
Query: 302 AGSVDID 308
+ SV I+
Sbjct: 246 SMSVKIN 252
Score = 124 (48.7 bits), Expect = 2.2e-17, Sum P(4) = 2.2e-17
Identities = 72/354 (20%), Positives = 138/354 (38%)
Query: 391 KAIKEATDTESELPHLSGMSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNP 450
K ++ + S L +S +T G + +T+F + ++ + + ++ + D K P
Sbjct: 370 KPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPF---DDKTP 426
Query: 451 GGNWTHTLSLWCLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGTCLEAPHVI 510
+ L CL+ ++ V PM+ + L F + + +
Sbjct: 427 TVS-NPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKIL--DFDPVVMSSFTM 483
Query: 511 DVDLQ-VLTSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKK-PLFVE 568
+ +L ++S G D +++ ++T + ++ R GQ AK P +
Sbjct: 484 TLARPCLLPMIVSKGNDQVTISSKFETREDTAVI-------RNYGQLLVEVAKTVPDGIV 536
Query: 569 PKGGSQEDFEIVLKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANK-----KG 623
S E V+ +Y+ QG E ++ T + N K +G
Sbjct: 537 CFFTSYLYLESVVASWYD---QGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRG 593
Query: 624 ASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEWYC 672
A LAV RGK+ G+ F + + + Y + Y + + N++
Sbjct: 594 AVLLAVARGKVSEGVDFDHHYGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDFLT 653
Query: 673 NQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYDSF 726
A R Q +GR +R + DYG +I D+RF R+ + KW+++ + DSF
Sbjct: 654 FDAMRHAAQCVGRALRGKTDYGIMIFADKRFSRHDKRSRLPKWIQEHL--VDSF 705
Score = 112 (44.5 bits), Expect = 2.2e-17, Sum P(4) = 2.2e-17
Identities = 36/107 (33%), Positives = 54/107 (50%)
Query: 20 VGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAW 78
V G+ V FPY+ Y Q +M + +LD GHC LLE P+GTGK+ +LL +A+
Sbjct: 5 VDGLLVYFPYEYIYPEQYAYMLELKRSLDAK---GHC--LLEMPSGTGKTATLLSLIVAY 59
Query: 79 Q-QNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPST 124
++ + +L S + P+ E V L N + P+ PP T
Sbjct: 60 MVEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNP-PPFT 105
Score = 59 (25.8 bits), Expect = 4.4e-12, Sum P(4) = 4.4e-12
Identities = 26/92 (28%), Positives = 42/92 (45%)
Query: 122 PSTNGQTAQVAMXXXXXXXXMTPTI---FYASRTHSQISQVISE-------YKKTAYRVP 171
PS G+TA + T+ Y SRT +I +VI+E Y++ P
Sbjct: 43 PSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPP 102
Query: 172 M---AVLASRKHYCTNKYV-RDKEN--IDEEC 197
VL+SRK+ C + V +++E +D +C
Sbjct: 103 PFTGLVLSSRKNMCIHPEVSKEREGKAVDGKC 134
Score = 38 (18.4 bits), Expect = 2.2e-17, Sum P(4) = 2.2e-17
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 884 EFVQLDRVSS-CKDYINTQCSLQKSSRCCEASSMPFSNED 922
+++Q V S C ++T+ ++Q + R + PF+ ED
Sbjct: 695 KWIQEHLVDSFCN--LSTEEAVQLARRWLRRMAQPFTRED 732
>TAIR|locus:2014525 [details] [associations]
symbol:UVH6 "ULTRAVIOLET HYPERSENSITIVE 6" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0009408
"response to heat" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0006457 "protein folding" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010286 "heat acclimation" evidence=RCA] [GO:0042542 "response
to hydrogen peroxide" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009411 "response to UV" evidence=IMP] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0005634 GO:GO:0009411 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 GO:GO:0009408 GO:GO:0004003 GO:GO:0006289
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:AY090788 EMBL:AF188623
EMBL:AC005278 EMBL:AY062471 EMBL:AY090915 EMBL:BT010344
IPI:IPI00543586 PIR:C86163 RefSeq:NP_171818.1 RefSeq:NP_849584.1
UniGene:At.10863 ProteinModelPortal:Q8W4M7 SMR:Q8W4M7 IntAct:Q8W4M7
STRING:Q8W4M7 PaxDb:Q8W4M7 PRIDE:Q8W4M7 EnsemblPlants:AT1G03190.1
EnsemblPlants:AT1G03190.2 GeneID:839557 KEGG:ath:AT1G03190
GeneFarm:4445 TAIR:At1g03190 HOGENOM:HOG000205390 InParanoid:Q8W4M7
KO:K10844 OMA:KDVDGKC PhylomeDB:Q8W4M7 ProtClustDB:CLSN2679645
Genevestigator:Q8W4M7 GermOnline:AT1G03190 Uniprot:Q8W4M7
Length = 758
Score = 153 (58.9 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 49/183 (26%), Positives = 88/183 (48%)
Query: 143 TPTIFYASRTHSQISQVISEYKK----TAYRVPMAVLASRKHYCTNKYVRDKEN---IDE 195
T T+ +T ++ +++ +Y+ T ++ L+SRK+ C N V EN +D
Sbjct: 74 TRTVHEMEKTLGEL-KLLHDYQVRHLGTQAKILALGLSSRKNLCVNTKVLAAENRDSVDA 132
Query: 196 ECKL-------LLGDRNLG---CPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVR 245
C+ L N C F+N K + L G V+ +EDL G+
Sbjct: 133 ACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPG----VYTLEDLRAFGKNRG 188
Query: 246 GCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGS 304
C Y+ AR M A ++ Y Y+++P + G + ++ K ++++ DEAHNI+++ +A S
Sbjct: 189 WCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNIDNVCIEALS 248
Query: 305 VDI 307
V +
Sbjct: 249 VSV 251
Score = 103 (41.3 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 37/146 (25%), Positives = 60/146 (41%)
Query: 622 KGASFLAVCRGKIVVGIPFPNIND---------IQVSLKK--KYNDTYRSSKNLLSGNEW 670
+GA F +V RGK+ GI F Q +L K + Y + ++
Sbjct: 592 RGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDF 651
Query: 671 YCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---SFD 727
A R Q +GR IR + DYG +I D+R+ R+ + W+ ++ S D
Sbjct: 652 LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTD 711
Query: 728 ASLEGLKSFFR------DVKGWVGKK 747
++ + F R D G +G+K
Sbjct: 712 MAIHIAREFLRKMAQPYDKAGTMGRK 737
Score = 91 (37.1 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 18 YHVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLL 72
+ + + V FPY Y Q +M + LD GHC LLE PTGTGK+++LL
Sbjct: 3 FKIEDVTVYFPYDNIYPEQYEYMVELKRALDAK---GHC--LLEMPTGTGKTIALL 53
Score = 48 (22.0 bits), Expect = 4.4e-17, Sum P(4) = 4.4e-17
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVE 568
Y M+ + W ETG + +K +F+E
Sbjct: 542 YSYMDGIIATWNETGILKEIMQQKLVFIE 570
Score = 46 (21.3 bits), Expect = 7.0e-11, Sum P(3) = 7.0e-11
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 999 DTSNLPPERDSSLSSSVNSHTQKRRKTM 1026
DT N+ E S SS+NS +KT+
Sbjct: 345 DTENVEKESPVSFVSSLNSQAGIEQKTL 372
Score = 40 (19.1 bits), Expect = 1.3e-05, Sum P(4) = 1.3e-05
Identities = 28/101 (27%), Positives = 36/101 (35%)
Query: 377 ISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSLTY-FFSRNGSHVSDY 435
+SR PI L T+ + E T EL L V L L SR V+
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 436 QLALQKYIKRDS--KNPGGNWTHTLSLWCLNPAVVFKDVAE 474
LA + D+ + +W LS NP V D E
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTE--NPNVELCDFFE 159
>UNIPROTKB|E7EVE9 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604 EMBL:L47234
HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00745781
ProteinModelPortal:E7EVE9 Ensembl:ENST00000391944 UCSC:uc010ejz.2
ArrayExpress:E7EVE9 Bgee:E7EVE9 Uniprot:E7EVE9
Length = 682
Score = 116 (45.9 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMRELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLP 103
Score = 112 (44.5 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 36/144 (25%), Positives = 64/144 (44%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YR 659
+E + A N +GA L+V RGK+ GI F + I + Y + Y
Sbjct: 503 LEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYL 562
Query: 660 SSKNLLSGNEWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKS 719
+ + N++ A R Q +GR IR + DYG ++ D+RF R + +W+++
Sbjct: 563 RDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEH 622
Query: 720 IKQYD---SFDASLEGLKSFFRDV 740
+ + + D ++ K F R +
Sbjct: 623 LTDANLNLTVDEGVQVAKYFLRQM 646
Score = 99 (39.9 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 33/124 (26%), Positives = 62/124 (50%)
Query: 259 AQLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQM 317
A +V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 318 ELEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQ 373
LE V + Q L + + LV + R+A+ A+ H + D+ L+E
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAV 241
Query: 374 EANI 377
+I
Sbjct: 242 PGSI 245
Score = 62 (26.9 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 464 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 513
Score = 48 (22.0 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 22/74 (29%), Positives = 31/74 (41%)
Query: 122 PSTNGQTAQVA---MXXXXXXXXMTPTIFYASRTHSQISQVISEYKKTA--Y------RV 170
PS G+T + M + Y SRT +I +VI E +K Y ++
Sbjct: 43 PSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKL 102
Query: 171 PMAVLA--SRKHYC 182
P LA SRK+ C
Sbjct: 103 PFLGLALSSRKNLC 116
Score = 38 (18.4 bits), Expect = 1.1e-08, Sum P(4) = 1.1e-08
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 258 DAQLVFCPYSYI 269
D LV+ PY YI
Sbjct: 6 DGLLVYFPYDYI 17
>DICTYBASE|DDB_G0267414 [details] [associations]
symbol:repD "transcription factor IIH component"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IEP] [GO:0043141 "ATP-dependent
5'-3' DNA helicase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex portion
of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core TFIIH
complex portion of NEF3 complex" evidence=ISS] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 dictyBase:DDB_G0267414
INTERPRO:IPR013020 GO:GO:0005524 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0000287 GO:GO:0003677 EMBL:AAFI02000003
GO:GO:0051539 GO:GO:0006366 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC EMBL:U77066
RefSeq:XP_647302.1 ProteinModelPortal:Q55G81 STRING:Q55G81
EnsemblProtists:DDB0191272 GeneID:8616111 KEGG:ddi:DDB_G0267414
ProtClustDB:CLSZ2431526 GO:GO:0000443 GO:GO:0000442 GO:GO:0043141
Uniprot:Q55G81
Length = 776
Score = 169 (64.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 72/277 (25%), Positives = 121/277 (43%)
Query: 100 AVTDPLANGGGFIPESQPSTIPPSTNGQTAQV-AMXXXXXXXXMTPTIFYASRTHSQISQ 158
A+ L NGG I E PS G+T + ++ + + Y SRT +I Q
Sbjct: 27 ALKRSLDNGGPCILEM------PSGTGKTVSLLSLISSYQVKNPSIKLIYCSRTVPEIEQ 80
Query: 159 VISEYKKTA-YR-------VPMAV---LASRKHYCTNKYV---RDKENIDEECKLLLGDR 204
E ++ YR P + ++SR++ C V RD + +D C+ L
Sbjct: 81 ATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQPRVSEERDGKVVDALCRELTSSW 140
Query: 205 NLGCPQFKNVHKVRGHPSLQKGGCHE-VHDIEDLVNVGQVVRGCSYYAARSMADDAQLVF 263
N P + S K E V+ +EDL G + C Y+ +R M + A +V
Sbjct: 141 NRESPTSEKCKFFENFESNGKEILLEGVYSLEDLKEYGLKHQMCPYFLSRHMLNFANIVI 200
Query: 264 CPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVL-------LKL 315
Y Y+++P I + +I++ DEAHNI+++ +A S++ID +L K+
Sbjct: 201 FSYQYLLDPKIASLISSSFPSNSIVVFDEAHNIDNVCINALSINIDNKLLDTSSKNIAKI 260
Query: 316 QMELEQVCSVNPMIYQPLIEMTQDLVGWIERRKATLA 352
++E + V+ + L + Q LV + R +T A
Sbjct: 261 NKQIEDIKKVDE---KRLKDEYQRLVNGLARSGSTRA 294
Score = 116 (45.9 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 43/171 (25%), Positives = 74/171 (43%)
Query: 622 KGASFLAVCRGKIVVGIPFPN-------------INDIQVSLKKKYNDTYRSSKNLLSGN 668
+GA L+V RGK+ GI F N IN L+ + + + + N
Sbjct: 585 RGAVLLSVARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLRARLE--FLRDRYQIREN 642
Query: 669 EWYCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIKQYD---S 725
E+ A R +Q +GR IR + DYG +I D+R+ R + +W+ + + S
Sbjct: 643 EFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLS 702
Query: 726 FDASLEGLKSFFRDVKGWVGKKMFNGLENSDNDVDHVSSMDQCKEVTKQNT 776
D ++ K+F R++ ++ L S ++HV K +QN+
Sbjct: 703 TDMAISLSKTFLREMGQPFSRE--EQLGKSLWSLEHVEKQSTSKPPQQQNS 751
Score = 94 (38.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 29/88 (32%), Positives = 47/88 (53%)
Query: 18 YHVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTL 76
+++ + V FPY Y Q +M + +LD G C +LE P+GTGK++SLL
Sbjct: 3 FYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNG---GPC--ILEMPSGTGKTVSLLSLIS 57
Query: 77 AWQ-QNCKLKNQLANISHSKPDTEAVTD 103
++Q +N +K L S + P+ E T+
Sbjct: 58 SYQVKNPSIK--LIYCSRTVPEIEQATE 83
Score = 58 (25.5 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y ME++ + W E G + + K +FVE ++ + L++Y + G
Sbjct: 535 YSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAES--ALALQNYKKACDSG 584
Score = 40 (19.1 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 23/148 (15%), Positives = 60/148 (40%)
Query: 822 IEYI-DLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEV 880
+E++ D ++ + + D+ + +++ + + + G + + +Y+ N L +
Sbjct: 630 LEFLRDRYQIRENEFLTFDAMRTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQW 689
Query: 881 EVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKETPAMDDNNTM 940
+Q F Q ++ ++T ++ S PFS E+ + ++ +T
Sbjct: 690 ILQ-FCQPQHLN-----LSTDMAISLSKTFLREMGQPFSREEQLGKSLWSLEHVEKQSTS 743
Query: 941 ASPGSLSKDGNSSSTIFQASTQSPDQLS 968
P + NS+ T +T + +S
Sbjct: 744 KPPQQQNSAINSTITTSTTTTTTTSTIS 771
>UNIPROTKB|J9NWT1 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000044333 Uniprot:J9NWT1
Length = 707
Score = 150 (57.9 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 63/243 (25%), Positives = 114/243 (46%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ ++++ Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 86 ELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPLRFGKDVDGKCHSLTASYVRAQ 145
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F V G G +++++DL +GQ C Y+ AR A
Sbjct: 146 YQQDSSLPHCRFYEEFDVHGRQVPLPAG---IYNLDDLKALGQRQGWCPYFLARYSILHA 202
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV+I L + Q
Sbjct: 203 NVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCIDSMSVNITRRTLDRCQGN 262
Query: 319 LEQ----VCSVNPMIYQPLIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQE 374
LE V + Q L E + LV + R+A+ A+ H + D+ L+E
Sbjct: 263 LETLQKTVLRIKETDEQRLREEYRRLVEGL--REASAARETDAHLANPVLPDEVLQEAVP 320
Query: 375 ANI 377
+I
Sbjct: 321 GSI 323
Score = 118 (46.6 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLP 103
Score = 62 (26.9 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQG 591
Y+ ME W E G + K LF+E + G++ + L+ Y + G
Sbjct: 542 YQYMESTVASWYEQGILENIQRNKLLFIETQDGAETS--VALEKYQEACENG 591
Score = 54 (24.1 bits), Expect = 1.0e-13, Sum P(4) = 1.0e-13
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 613 IESQENA--NKKGASFLAVCRGKIVVGIPF 640
+E + A N +GA L+V RGK+ GI F
Sbjct: 581 LEKYQEACENGRGAILLSVARGKVSEGIDF 610
Score = 38 (18.4 bits), Expect = 1.6e-14, Sum P(4) = 1.6e-14
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 965 DQLSVHSQSLTNPVRVPSSAQPEMVVTP 992
DQ + + +T+ + +P + QP + V P
Sbjct: 642 DQFQI--REMTSSLWMPCATQPSVWVVP 667
>GENEDB_PFALCIPARUM|MAL13P1.134 [details] [associations]
symbol:MAL13P1.134 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 121 (47.7 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 233 DIEDLVNV--GQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILD 290
DIED+ ++ + + C YY ++ +A ++ PY I+N IR ++++IK I+I D
Sbjct: 349 DIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINIKNNIVIFD 408
Query: 291 EAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
E+ NI + SV I +L ++ L +
Sbjct: 409 ESQNIIENINSCNSVSISNHHILFCKIILNE 439
Score = 90 (36.7 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 146 IFYASRTHSQISQVISEYKKTA------YRVPMAVLASRKHYCTNK-YVRDKENIDE 195
IF SRT SQ++Q E KK + + M ++ SRKH C N+ +++ +NI+E
Sbjct: 224 IFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINEAFLKKYKNINE 280
Score = 84 (34.6 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 675 AFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI--------KQYDSF 726
A + +NQ IGR +RH D+ + LD RF ++ ++ +++ I K YD
Sbjct: 980 AMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHINDIDNIIYKNYDDT 1039
Query: 727 DASLEGLKSFFRD 739
+ S +K F+D
Sbjct: 1040 ENSYIKIKEHFQD 1052
Score = 64 (27.6 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 56 HALLESPTGTGKSLSLLCSTLAW 78
H + E TG+GKSL+LL S + W
Sbjct: 87 HIICEMKTGSGKSLTLLTSLIYW 109
Score = 54 (24.1 bits), Expect = 1.5e-09, Sum P(6) = 1.5e-09
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 798 FSHQKSQGNFEVQTSLQTDQNNS-CIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYD 856
F+ + + N S+ + N S IE+ + MN + NHS + G+ K+ + + S D
Sbjct: 547 FTQKLIKSNLYDYVSIHYNDNYSPTIEHSENNLMN-QINHSTRTLNGNNCKDEQNIFSTD 605
Query: 857 NSGQKLHSSVKYDSFPGLNLLD 878
K+ + + + GL +D
Sbjct: 606 CDIDKIKNKKRIMTSHGLTPVD 627
Score = 49 (22.3 bits), Expect = 2.2e-09, Sum P(5) = 2.2e-09
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 638 IPFPNINDIQ---VSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQ 681
I + N +D + + +K+ + DTY + K+ + C F+ ++Q
Sbjct: 1031 IIYKNYDDTENSYIKIKEHFQDTYANIKHFYTNQMSSCGFNFQPISQ 1077
Score = 45 (20.9 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 27 FPYQPYGSQLVFM 39
FP++PY QL FM
Sbjct: 13 FPFEPYKIQLNFM 25
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(5) = 1.0e-08
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 642 NINDIQVSLKKKYNDTYRS 660
+INDI + K Y+DT S
Sbjct: 1024 HINDIDNIIYKNYDDTENS 1042
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(6) = 1.9e-08
Identities = 37/158 (23%), Positives = 65/158 (41%)
Query: 823 EYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEV 882
EYI + N NN++I K N L S+ + Q L + KY L++L+ +
Sbjct: 439 EYIKKYK-NVLNNNNIIMIKQIIVYCNLLLESFTSIQQNLININKYTLLSKLDVLNLNNI 497
Query: 883 QEFVQLDRVSSCKDY-INTQCSLQ---KSSRCCEASSMPFSNEDPELLLVKETPAMDDNN 938
F L+ C+ I T+ + K+ + +S P +L + T + +N
Sbjct: 498 SNF--LNNSMFCRKIKIFTESLMSTYFKNIKKYLHASFPIFKTTAIYILNEFTQKLIKSN 555
Query: 939 TMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTN 976
+ S+ + N S TI + +Q++ HS N
Sbjct: 556 -LYDYVSIHYNDNYSPTIEHSENNLMNQIN-HSTRTLN 591
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 522 STGPDNYPLNASYKTADGYKLMEKLCN 548
S+ N N +T D Y L+ KL N
Sbjct: 318 SSCSSNSSENEDIETIDNYILITKLIN 344
Score = 37 (18.1 bits), Expect = 1.5e-09, Sum P(6) = 1.5e-09
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1155 IWCEEDGCVYNTLFC 1169
+ C+ C+ NT C
Sbjct: 660 VMCKRSNCINNTQKC 674
>UNIPROTKB|Q8IE72 [details] [associations]
symbol:MAL13P1.134 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 121 (47.7 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 27/91 (29%), Positives = 49/91 (53%)
Query: 233 DIEDLVNV--GQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDIKGAILILD 290
DIED+ ++ + + C YY ++ +A ++ PY I+N IR ++++IK I+I D
Sbjct: 349 DIEDIKDICKNEHIEICPYYLSKENIKNADIILLPYICILNENIRNNLKINIKNNIVIFD 408
Query: 291 EAHNIEDIARDAGSVDIDEDVLLKLQMELEQ 321
E+ NI + SV I +L ++ L +
Sbjct: 409 ESQNIIENINSCNSVSISNHHILFCKIILNE 439
Score = 90 (36.7 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 146 IFYASRTHSQISQVISEYKKTA------YRVPMAVLASRKHYCTNK-YVRDKENIDE 195
IF SRT SQ++Q E KK + + M ++ SRKH C N+ +++ +NI+E
Sbjct: 224 IFICSRTQSQLNQYFHELKKIEKKMGEDFSINMIIIGSRKHLCINEAFLKKYKNINE 280
Score = 84 (34.6 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 21/73 (28%), Positives = 36/73 (49%)
Query: 675 AFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSI--------KQYDSF 726
A + +NQ IGR +RH D+ + LD RF ++ ++ +++ I K YD
Sbjct: 980 AMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHINDIDNIIYKNYDDT 1039
Query: 727 DASLEGLKSFFRD 739
+ S +K F+D
Sbjct: 1040 ENSYIKIKEHFQD 1052
Score = 64 (27.6 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 56 HALLESPTGTGKSLSLLCSTLAW 78
H + E TG+GKSL+LL S + W
Sbjct: 87 HIICEMKTGSGKSLTLLTSLIYW 109
Score = 54 (24.1 bits), Expect = 1.5e-09, Sum P(6) = 1.5e-09
Identities = 20/82 (24%), Positives = 38/82 (46%)
Query: 798 FSHQKSQGNFEVQTSLQTDQNNS-CIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYD 856
F+ + + N S+ + N S IE+ + MN + NHS + G+ K+ + + S D
Sbjct: 547 FTQKLIKSNLYDYVSIHYNDNYSPTIEHSENNLMN-QINHSTRTLNGNNCKDEQNIFSTD 605
Query: 857 NSGQKLHSSVKYDSFPGLNLLD 878
K+ + + + GL +D
Sbjct: 606 CDIDKIKNKKRIMTSHGLTPVD 627
Score = 49 (22.3 bits), Expect = 2.2e-09, Sum P(5) = 2.2e-09
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 638 IPFPNINDIQ---VSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQ 681
I + N +D + + +K+ + DTY + K+ + C F+ ++Q
Sbjct: 1031 IIYKNYDDTENSYIKIKEHFQDTYANIKHFYTNQMSSCGFNFQPISQ 1077
Score = 45 (20.9 bits), Expect = 8.9e-13, Sum P(5) = 8.9e-13
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 27 FPYQPYGSQLVFM 39
FP++PY QL FM
Sbjct: 13 FPFEPYKIQLNFM 25
Score = 42 (19.8 bits), Expect = 1.0e-08, Sum P(5) = 1.0e-08
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 642 NINDIQVSLKKKYNDTYRS 660
+INDI + K Y+DT S
Sbjct: 1024 HINDIDNIIYKNYDDTENS 1042
Score = 42 (19.8 bits), Expect = 1.9e-08, Sum P(6) = 1.9e-08
Identities = 37/158 (23%), Positives = 65/158 (41%)
Query: 823 EYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPGLNLLDEVEV 882
EYI + N NN++I K N L S+ + Q L + KY L++L+ +
Sbjct: 439 EYIKKYK-NVLNNNNIIMIKQIIVYCNLLLESFTSIQQNLININKYTLLSKLDVLNLNNI 497
Query: 883 QEFVQLDRVSSCKDY-INTQCSLQ---KSSRCCEASSMPFSNEDPELLLVKETPAMDDNN 938
F L+ C+ I T+ + K+ + +S P +L + T + +N
Sbjct: 498 SNF--LNNSMFCRKIKIFTESLMSTYFKNIKKYLHASFPIFKTTAIYILNEFTQKLIKSN 555
Query: 939 TMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTN 976
+ S+ + N S TI + +Q++ HS N
Sbjct: 556 -LYDYVSIHYNDNYSPTIEHSENNLMNQIN-HSTRTLN 591
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(5) = 0.00012
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 522 STGPDNYPLNASYKTADGYKLMEKLCN 548
S+ N N +T D Y L+ KL N
Sbjct: 318 SSCSSNSSENEDIETIDNYILITKLIN 344
Score = 37 (18.1 bits), Expect = 1.5e-09, Sum P(6) = 1.5e-09
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 1155 IWCEEDGCVYNTLFC 1169
+ C+ C+ NT C
Sbjct: 660 VMCKRSNCINNTQKC 674
>UNIPROTKB|J3KS24 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
GO:GO:0016817 Ensembl:ENST00000577913 Uniprot:J3KS24
Length = 69
Score = 174 (66.3 bits), Expect = 8.1e-12, P = 8.1e-12
Identities = 35/64 (54%), Positives = 46/64 (71%)
Query: 18 YHVGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
Y +GG+++ FPY+ Y SQL M ++ L+ Q HC LLESPTG+GKSL+LLCS LA
Sbjct: 8 YTIGGVKIYFPYKAYPSQLAMMNSILRGLNSKQ---HC--LLESPTGSGKSLALLCSALA 62
Query: 78 WQQN 81
WQQ+
Sbjct: 63 WQQS 66
>UNIPROTKB|F1N0S0 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 GeneTree:ENSGT00530000063199 GO:GO:0016817
IPI:IPI00840795 EMBL:DAAA02036220 EMBL:DAAA02036222
EMBL:DAAA02036221 EMBL:DAAA02036223 Ensembl:ENSBTAT00000045108
Uniprot:F1N0S0
Length = 1250
Score = 159 (61.0 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 22 GIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQN 81
G+ V+FP+QPY Q +M +V+ L + +LESPTGTGK+L LLCSTLAW+++
Sbjct: 8 GVTVDFPFQPYKCQEEYMSKVLECLQEK-----VNGILESPTGTGKTLCLLCSTLAWREH 62
Query: 82 CKLKNQLANISHSKPDTEAVTD-PLANGGGFIPE 114
+ I+ + E D LA+ G IPE
Sbjct: 63 LRDAVSARRIAE-RASGELFPDRTLASWGNAIPE 95
Score = 102 (41.0 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 144 PTIFYASRTHSQISQVISEYKKTAYRVPMAVLAS 177
P I YASRTHSQ++QVISE + T+YR P ++ S
Sbjct: 106 PKIIYASRTHSQLTQVISELRNTSYRPPDGLVHS 139
Score = 52 (23.4 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
Identities = 12/50 (24%), Positives = 21/50 (42%)
Query: 948 KDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMVVTPEKEVT 997
+DG + + Q ++P S H L P+ P S+ M + +T
Sbjct: 563 QDGETPCIVTQDIPRTPAHSSPHLPGLVTPLLSPGSSTASMAPSRRSRIT 612
Score = 39 (18.8 bits), Expect = 4.1e-11, Sum P(3) = 4.1e-11
Identities = 20/84 (23%), Positives = 38/84 (45%)
Query: 954 STIFQASTQSPDQLSVHSQS---LTN------PVRVPSSAQPEMVVTPEKEVTGDTSNLP 1004
S +F AS +S + S++ LT+ P + +SA+ + P GD S
Sbjct: 806 SVVFPASDKSSTGVCGRSRAQECLTSGTSRSVPCCLTTSAEANLTCWPLLAAFGDPSRTR 865
Query: 1005 PERDSSLSSSVNSHTQKRRKTMVS 1028
P R + ++ ++ T + + MV+
Sbjct: 866 PARHPEVPAA-STDTGRAKLFMVA 888
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(4) = 1.2e-11
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 1073 PVMDKTLQISCSLCRSPLGLPEN-HLYVRCSVTSSAKAHL 1111
P DK+ C R+ L V C +T+SA+A+L
Sbjct: 810 PASDKSSTGVCGRSRAQECLTSGTSRSVPCCLTTSAEANL 849
>UNIPROTKB|H0YFY8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] InterPro:IPR006555
InterPro:IPR027076 Pfam:PF13307 SMART:SM00491 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 Ensembl:ENST00000539702 Uniprot:H0YFY8
Length = 172
Score = 161 (61.7 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 33/108 (30%), Positives = 59/108 (54%)
Query: 634 IVVGIPFPNINDIQVSLKKKYNDTY--RSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRF 691
++VG+PFPNI ++ K Y D R+ G N +A+NQ+IGR IRH+
Sbjct: 60 VMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQK 119
Query: 692 DYGAIILLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRD 739
D+ +++LLD+R+ A + W+R ++ +F ++ ++ F R+
Sbjct: 120 DFASVVLLDQRYARPPVLAKLPAWIRARVEVKATFGPAIAAVQKFHRE 167
>UNIPROTKB|K7EIT8 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 INTERPRO:IPR013020 TIGRFAMs:TIGR00604
EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586131 Uniprot:K7EIT8
Length = 292
Score = 133 (51.9 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 46/182 (25%), Positives = 89/182 (48%)
Query: 155 QISQVISEYKKT-AYRVPMAVLA--SRKHYCTNKYV---RDKENIDEECKLLLG------ 202
++ ++++ Y+K ++P LA SRK+ C + V R +++D +C L
Sbjct: 62 ELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRAQ 121
Query: 203 ---DRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDA 259
D +L +F G G +++++DL +G+ C Y+ AR A
Sbjct: 122 YQHDTSLPHCRFYEEFDAHGREVPLPAG---IYNLDDLKALGRRQGWCPYFLARYSILHA 178
Query: 260 QLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQME 318
+V Y Y+++P I + ++ + A+++ DEAHNI+++ D+ SV++ L + Q
Sbjct: 179 NVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGN 238
Query: 319 LE 320
LE
Sbjct: 239 LE 240
Score = 93 (37.8 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 52 DGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLK-NQLANISHSKPDTEAVTDPLANGGG 110
D H +LE P+GTGK++SLL +A+Q+ L+ +L S + P+ E V + L
Sbjct: 9 DAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLN 68
Query: 111 FIPESQPSTIP 121
F + + +P
Sbjct: 69 FYEKQEGEKLP 79
>UNIPROTKB|J3QKX0 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
SMART:SM00491 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
Ensembl:ENST00000584322 Uniprot:J3QKX0
Length = 180
Score = 159 (61.0 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 540 YKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSIS-QGSKCAXXX 598
YKL+EKL RW TG W L K + VEP+GG + +F+ +L+ YY++I +G K
Sbjct: 26 YKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALL 85
Query: 599 XXXXXXEGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVS 649
+ + L+ S +NA R I +GIPFPN+ D+Q++
Sbjct: 86 VAVCRGKVSEGLDF--SDDNA-----------RAVITIGIPFPNVKDLQLT 123
>UNIPROTKB|F5H235 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI01012139
ProteinModelPortal:F5H235 SMR:F5H235 Ensembl:ENST00000539049
ArrayExpress:F5H235 Bgee:F5H235 Uniprot:F5H235
Length = 297
Score = 128 (50.1 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
Score = 93 (37.8 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I+Y SRTHSQ++Q + E KK+ + V + L SR++ C N+ V+
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVK 273
Score = 37 (18.1 bits), Expect = 0.00046, Sum P(2) = 0.00046
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 353 KREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLS 407
K+E + ++A R+ +E + + + L+ A K +++ + L LS
Sbjct: 120 KKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
>UNIPROTKB|C9K0E8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 PROSITE:PS51193 SMART:SM00488 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 HOGENOM:HOG000070023 IPI:IPI01012155
ProteinModelPortal:C9K0E8 SMR:C9K0E8 STRING:C9K0E8
Ensembl:ENST00000438391 UCSC:uc001qvo.2 ArrayExpress:C9K0E8
Bgee:C9K0E8 Uniprot:C9K0E8
Length = 302
Score = 128 (50.1 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
Score = 93 (37.8 bits), Expect = 8.9e-10, Sum P(2) = 8.9e-10
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVR 188
I+Y SRTHSQ++Q + E KK+ + V + L SR++ C N+ V+
Sbjct: 200 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVK 244
Score = 65 (27.9 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 38/167 (22%), Positives = 78/167 (46%)
Query: 698 LLDE-RFQEERNRAHISKWLRKSIKQYDSFDASLEGLKS-----FFRDVKGWVGKKMFNG 751
L+D + QEE R ++ + R+ ++ + LE L+S + + KK+ +
Sbjct: 126 LVDRLKRQEEEERENLLRLSREMLETGPEAER-LEQLESGEEELVLAEYESDEEKKVASR 184
Query: 752 LENSDNDVD--HVSSMDQCKEVTKQNTQ---ELNKSDHSGQNVQSISKYDPFSHQKSQGN 806
++ ++D++ H++ + C Q Q E+ KS G++V+ +S S Q N
Sbjct: 185 VDEDEDDLEEEHITKIYYCSRTHSQLAQFVHEVKKSPF-GKDVRLVSLG---SRQNLCVN 240
Query: 807 FEVQTSLQTDQ--NNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKK 851
+V+ SL + Q N+ C+ D++R + + K R++ K+
Sbjct: 241 EDVK-SLGSVQLINDRCV---DMQRSRHEKKKGAEEEKPKRRRQEKQ 283
>WB|WBGene00021752 [details] [associations]
symbol:Y50D7A.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0000003
EMBL:FO081772 GO:GO:0004003 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC
GeneTree:ENSGT00550000075092 RefSeq:NP_497182.2 UniGene:Cel.30456
ProteinModelPortal:Q9N3L2 STRING:Q9N3L2 PaxDb:Q9N3L2
EnsemblMetazoa:Y50D7A.2 GeneID:175190 KEGG:cel:CELE_Y50D7A.2
UCSC:Y50D7A.2 CTD:175190 WormBase:Y50D7A.2 InParanoid:Q9N3L2
NextBio:887130 Uniprot:Q9N3L2
Length = 606
Score = 131 (51.2 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 52/185 (28%), Positives = 84/185 (45%)
Query: 205 NLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFC 264
NL KN K P L K C EDL ++G+ + C Y+ AR + A +V
Sbjct: 3 NLVVETLKNTKKT---PILMKF-CPNFQ--EDLRSLGREKKICPYFTARQAINRAHIVVY 56
Query: 265 PYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVC 323
Y YI++P I + D + ++++ DEAHNI+++ ++ SV I + + EL+ +
Sbjct: 57 SYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNVCIESMSVAISQKNADRALQELQSLE 116
Query: 324 SV-NPMIYQPLIEMTQDLVGWIERRKATLAKR-EFQHFFSCWTGDKALRELQEANISRQC 381
V N M ++ + +E K T +R + + D+ L E NI RQ
Sbjct: 117 GVVNRMKSSNSEKLQSEYDKLVEGLKRTERERANDERLANPVLPDQILHEAVPGNI-RQA 175
Query: 382 FPILL 386
LL
Sbjct: 176 NHFLL 180
Score = 104 (41.7 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 27/111 (24%), Positives = 52/111 (46%)
Query: 622 KGASFLAVCRGKIVVGIPFPNIND---IQVSLKKKYNDT--------YRSSKNLLSGNEW 670
+GA +V RGK+ GI F + I + + Y ++ Y + + N++
Sbjct: 437 RGAVLFSVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDF 496
Query: 671 YCNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRAHISKWLRKSIK 721
A R Q +GR +R + DYG ++ D+RF R + +W+++ ++
Sbjct: 497 LTFDAMRHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLE 547
Score = 38 (18.4 bits), Expect = 1.9e-09, Sum P(3) = 1.9e-09
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 439 LQKYIKRDSKNPG--GNWTHTLSLWCLNPAVV 468
L+ Y K +P ++T TL+ CL+P VV
Sbjct: 309 LEMYPKVLDFDPSVIASFTMTLARPCLSPLVV 340
>UNIPROTKB|B4DMS8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
UniGene:Hs.443960 HGNC:HGNC:2736 EMBL:AC008013 EMBL:AK297607
IPI:IPI00909981 SMR:B4DMS8 STRING:B4DMS8 Ensembl:ENST00000542129
HOGENOM:HOG000070023 HOVERGEN:HBG104020 Uniprot:B4DMS8
Length = 304
Score = 128 (50.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
Score = 74 (31.1 bits), Expect = 8.3e-08, Sum P(2) = 8.3e-08
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRK 179
I+Y SRTHSQ++Q + E KK+ + V + L SR+
Sbjct: 229 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQ 264
Score = 37 (18.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 353 KREFQHFFSCWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLS 407
K+E + ++A R+ +E + + + L+ A K +++ + L LS
Sbjct: 120 KKEERDLVDRLKAEQARRKQREERLQQLQHRVQLKYAAKRLRQEEEERENLLRLS 174
>UNIPROTKB|F1SK82 [details] [associations]
symbol:F1SK82 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
GeneTree:ENSGT00530000063199 GO:GO:0016817 EMBL:CU861969
Ensembl:ENSSSCT00000000811 OMA:CAVAKHP Uniprot:F1SK82
Length = 210
Score = 145 (56.1 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 38/104 (36%), Positives = 54/104 (51%)
Query: 21 GGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQ 80
GGI FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W +
Sbjct: 9 GGIHFPFPFTPYPIQKDFMAALYQVLE-AGKIG----IFESPTGTGKSLSLICGALSWLR 63
Query: 81 NCKLKNQLANISHSKPDTEAVTDPLANGGG--FIPESQPSTIPP 122
+ + K + + EA PL+NG +P + T+ P
Sbjct: 64 DFEQKKRQEEARLL--EAEATAAPLSNGKDPLLLPLASQGTLGP 105
>UNIPROTKB|F5GYY1 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010700 ProteinModelPortal:F5GYY1 SMR:F5GYY1
Ensembl:ENST00000542244 ArrayExpress:F5GYY1 Bgee:F5GYY1
Uniprot:F5GYY1
Length = 171
Score = 128 (50.1 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 8 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 62
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 63 RDFEQKKR 70
>UNIPROTKB|F6WZM0 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
HGNC:HGNC:2736 EMBL:AC008013 IPI:IPI00943235
ProteinModelPortal:F6WZM0 SMR:F6WZM0 Ensembl:ENST00000540935
ArrayExpress:F6WZM0 Bgee:F6WZM0 Uniprot:F6WZM0
Length = 288
Score = 94 (38.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 23/71 (32%), Positives = 41/71 (57%)
Query: 146 IFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVRDKENIDEECKLLLGD 203
I+Y SRTHSQ++Q + E KK+ + V + L SR++ C N+ V+ ++ L+ D
Sbjct: 203 IYYCSRTHSQLAQFVHEVKKSPFGKDVRLVSLGSRQNLCVNEDVKSLGSVQ-----LIND 257
Query: 204 RNLGCPQFKNV 214
R + + ++V
Sbjct: 258 RCVDMQRSRHV 268
Score = 91 (37.1 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 58 LLESPTGTGKSLSLLCSTLAWQQNCKLKNQ 87
+ ESPTGTGKSLSL+C L+W ++ + K +
Sbjct: 15 IFESPTGTGKSLSLICGALSWLRDFEQKKR 44
>UNIPROTKB|F5GXL6 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] InterPro:IPR014013
PROSITE:PS51193 HGNC:HGNC:2736 GO:GO:0016817 EMBL:AC008013
IPI:IPI01010239 ProteinModelPortal:F5GXL6 SMR:F5GXL6
Ensembl:ENST00000535317 ArrayExpress:F5GXL6 Bgee:F5GXL6
Uniprot:F5GXL6
Length = 192
Score = 128 (50.1 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 20 VGGIQVEFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQ 79
VG I FP+ PY Q FM + L+ A + G + ESPTGTGKSLSL+C L+W
Sbjct: 44 VGAIHFPFPFTPYSIQEDFMAELYRVLE-AGKIG----IFESPTGTGKSLSLICGALSWL 98
Query: 80 QNCKLKNQ 87
++ + K +
Sbjct: 99 RDFEQKKR 106
>UNIPROTKB|B4E0F6 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 EMBL:L47234
UniGene:Hs.487294 HGNC:HGNC:3434 ChiTaRS:ERCC2 EMBL:AK303358
IPI:IPI01014366 SMR:B4E0F6 STRING:B4E0F6 Ensembl:ENST00000221481
Ensembl:ENST00000591309 Uniprot:B4E0F6
Length = 127
Score = 116 (45.9 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 35/105 (33%), Positives = 54/105 (51%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMRELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIP 121
+Q+ L+ +L S + P+ E V + L F + + +P
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLP 103
>DICTYBASE|DDB_G0275733 [details] [associations]
symbol:med26 "putative mediator complex subunit 26"
species:44689 "Dictyostelium discoideum" [GO:0016592 "mediator
complex" evidence=ISS] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=ISS] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR017923 Pfam:PF08711 dictyBase:DDB_G0275733
GO:GO:0006355 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006367 GO:GO:0016592 Gene3D:1.20.930.10
SUPFAM:SSF47676 RefSeq:XP_643556.2 ProteinModelPortal:Q552X2
EnsemblProtists:DDB0266833 GeneID:8620139 KEGG:ddi:DDB_G0275733
eggNOG:NOG149746 OMA:KMSNACK Uniprot:Q552X2
Length = 2073
Score = 154 (59.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 85/405 (20%), Positives = 170/405 (41%)
Query: 753 ENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTS 812
+N ++D+++ ++ + N N ++++ N + K ++ N + T
Sbjct: 832 KNINDDINNNNNNNNSNNNNNNNNNNNNNNNNNNTNTNNEIKK---TNNDISTNLSMPTV 888
Query: 813 LQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYD-NSGQKLHSSVKYDSF 871
+ + +N+ L N NN++ +SS G + NS N K VK +S
Sbjct: 889 VDLNSSNNITSSTFLLNPNINNNNNNNSSGGGGSSSSSNSNSSSPNIPNKPKKPVKSNSK 948
Query: 872 PGLNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLLVKET 931
++LL++ + D S ++ S SS ++S S++D + K+
Sbjct: 949 KVIDLLEDNDSDSSDSSDSSDSSDSSDSSDSSDSDSSDSSDSSD---SSDDEKKKKPKK- 1004
Query: 932 PAMDDNNTMASPGSL-SKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPEMV- 989
P ++ N + + S SKD +ST +T + + +Q T+ ++ PSS P
Sbjct: 1005 PIVNKKNLVKTNTSTNSKDSKPASTATSTTTTTTNSKPSITQP-TSKIK-PSSTIPSQPT 1062
Query: 990 -VTPEKEVTGDTSNLPPERDSSL-SSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEF 1047
+T +K+ T++LP SS S++V + KT+ +P+ L +S A
Sbjct: 1063 SITTKKKPENSTTSLPASTSSSSPSNTVIKSSPPISKTLPTPTSTTSLSSSSSATVNKPI 1122
Query: 1048 NSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCS-LCRSPLGLPENHLYVRCSVTSS 1106
T K S +NN ++ +S+ ++K S S L LG P N+ ++ +
Sbjct: 1123 PPTTK--KPISTINNNTLNNNTNSS--INKIASNSTSTLGNKNLGTPSNYNNNNNNIGAE 1178
Query: 1107 AKAHLVSLLKQRQELCANVTSIPVIMTDISSVDQLLTNQSFGGAS 1151
K L + Q N +P + I+ ++++ + + G +
Sbjct: 1179 KKKEKALTLTESQ--LTNEKELPSLTDYIAQLNKIKKSNTTSGVT 1221
Score = 44 (20.5 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 605 EGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNL 664
+GNN+ N + N N +S + + NIND ++ N++ ++ N
Sbjct: 796 KGNNNNNNNKINNNNNTSSSSSITIPINNTTSSPINKNIND-DINNNNNNNNSNNNNNNN 854
Query: 665 LSGN 668
+ N
Sbjct: 855 NNNN 858
>UNIPROTKB|I3LNA6 [details] [associations]
symbol:I3LNA6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR014013 PROSITE:PS51193 GO:GO:0005634
GO:GO:0006915 GO:GO:0043066 GO:GO:0043588 GO:GO:0006979
GO:GO:0008283 GO:GO:0007568 GO:GO:0001701 GO:GO:0030198
GO:GO:0040016 GO:GO:0009791 GO:GO:0060218 GO:GO:0035264
GO:GO:0021510 GO:GO:0030282 GO:GO:0006289 GO:GO:0043388
GO:GO:0009650 GO:GO:0035315 GO:GO:0043249 GO:GO:0032289
GO:GO:0048820 GeneTree:ENSGT00550000075092 GO:GO:0016817
Ensembl:ENSSSCT00000028846 OMA:QAYPLEV Uniprot:I3LNA6
Length = 90
Score = 111 (44.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 32/86 (37%), Positives = 48/86 (55%)
Query: 19 HVGGIQVEFPYQP-YGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLA 77
+V G+ V FPY Y Q +M + TLD GH +LE P+GTGK++SLL +A
Sbjct: 4 NVDGLLVYFPYDYIYPEQFSYMLELKRTLDAK---GH--GVLEMPSGTGKTVSLLALIMA 58
Query: 78 WQQNCKLK-NQLANISHSKPDTEAVT 102
+Q+ L+ +L S + P+ E V+
Sbjct: 59 YQRAYPLEVTKLIYCSRTVPEIEKVS 84
>UNIPROTKB|Q724Q2 [details] [associations]
symbol:LMOf2365_0172 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AE017262 GenomeReviews:AE017262_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS RefSeq:YP_012782.1
ProteinModelPortal:Q724Q2 STRING:Q724Q2 GeneID:2798762
KEGG:lmf:LMOf2365_0172 PATRIC:20321523 ProtClustDB:CLSK2518435
Uniprot:Q724Q2
Length = 779
Score = 104 (41.7 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 31/104 (29%), Positives = 49/104 (47%)
Query: 632 GKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEW-YCNQAFRALNQAIGRCIRHR 690
G VVG+ +N +K YN+T + G ++ Y + QA+GR IR
Sbjct: 677 GAAVVGVGLAQLNHESDLIKDYYNET------IGQGFDYAYQIPGMNKVLQAVGRVIRGE 730
Query: 691 FDYGAIILLDERFQEERNRAHI-SKWLR-KSIKQYDSFDASLEG 732
D G ++L++ERF +R RA + W K++K D + G
Sbjct: 731 SDRGVVLLIEERFSADRYRALFPTHWNHAKTVKSTDDISREVAG 774
Score = 79 (32.9 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 22/98 (22%), Positives = 47/98 (47%)
Query: 247 CSYYAARSMADDAQLVFCPYSYIINPVI---RGAMEVDIKGAILILDEAHNIEDIARDAG 303
C + + +A ++ C Y+Y+ +PV+ R E K L+ DE HN+ D AR
Sbjct: 328 CPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLV-DEVHNLVDRARSMY 386
Query: 304 SVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLV 341
S + + +++++ L+ N + + M ++++
Sbjct: 387 SATLKKSTVMQVKRGLDS--KKNKRLLNAINVMNKEMI 422
Score = 54 (24.1 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 24 QVEFPYQPYGS-QLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLL 72
++ FPY Y S Q V T+ ++ C E+PTG GK++S L
Sbjct: 179 ELTFPYDNYRSGQRELAIAVYRTIS-SEESLFC----EAPTGIGKTMSTL 223
Score = 40 (19.1 bits), Expect = 4.4e-05, Sum P(4) = 4.4e-05
Identities = 9/41 (21%), Positives = 18/41 (43%)
Query: 462 CLNPAVVFKDVAEXXXXXXXXXXXXXPMNSFSSELGVQFGT 502
CL+PA + + + P++ +++ LG Q T
Sbjct: 510 CLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDT 550
>UNIPROTKB|Q4KBT0 [details] [associations]
symbol:PFL_3198 "DEAD 2 domain protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0004003 eggNOG:COG1199
RefSeq:YP_260303.1 ProteinModelPortal:Q4KBT0 STRING:Q4KBT0
GeneID:3478111 KEGG:pfl:PFL_3198 PATRIC:19875717
HOGENOM:HOG000183657 OMA:YLAFFSS ProtClustDB:CLSK866841
BioCyc:PFLU220664:GIX8-3213-MONOMER Uniprot:Q4KBT0
Length = 758
Score = 93 (37.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 23/84 (27%), Positives = 39/84 (46%)
Query: 632 GKIVVGIPFPNINDIQVSLKKKYNDTYRSSKNLLSGNEWYCNQAFRALNQAIGRCIRHRF 691
G V + P +N + +K++ + S + Y + + QA GR IR +
Sbjct: 670 GAFVATLGLPQLNPLNEQMKQRMAALFGSGYDYT-----YLYPGLQKVVQAAGRVIRGQS 724
Query: 692 DYGAIILLDERFQEERNRAHISKW 715
D G ++L+D+RF E R R + W
Sbjct: 725 DRGVLVLIDDRFAEPRVRQLLPSW 748
Score = 93 (37.8 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 35/138 (25%), Positives = 62/138 (44%)
Query: 188 RDK--ENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVR 245
RDK E++D+ C G+ CP K + R + Q + D + L V +
Sbjct: 271 RDKACEHLDKACH---GE---SCPLAKGFYD-RLPAARQAASQVPLLDRQALREVALEHQ 323
Query: 246 GCSYYAARSMADDAQLVFCPYSYIIN--PVIRGAMEVDIKGAILILDEAHNIEDIARDAG 303
C YY ++ MA + LV Y+Y + ++ G + + +++DEAHN+ + R
Sbjct: 324 VCPYYLSQEMARWSDLVVADYNYYFDFSALLFGLAQANQWQVAVLVDEAHNLVERGRGMY 383
Query: 304 SVDIDEDVLLKLQMELEQ 321
S +D+ L ++ Q
Sbjct: 384 SASLDQQQLASVRSSAPQ 401
Score = 47 (21.6 bits), Expect = 6.5e-05, Sum P(3) = 6.5e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 48 RAQRDGHCHALLESPTGTGKSLSLL 72
+A G C L ++PTG GK+L +
Sbjct: 196 KAVSTGRC-LLAQAPTGIGKTLGTI 219
>CGD|CAL0003874 [details] [associations]
symbol:PGA55 species:5476 "Candida albicans" [GO:0009986
"cell surface" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0003874 GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1
GeneID:3645784 KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 136 (52.9 bits), Expect = 0.00011, P = 0.00011
Identities = 76/344 (22%), Positives = 153/344 (44%)
Query: 752 LENSDNDVDHVSSMDQCKEVTKQNTQELNKSDH---SGQNVQSISKYDPFSHQKSQGNFE 808
+ +S V S + EV+ ++ E++ S S + V S S+ S + + E
Sbjct: 209 VSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE 266
Query: 809 VQTSLQTDQNNSCIEYI-DLERMNDKNNHSIDSSKGSTRKENKKLNSYD---NSGQKLHS 864
V +S + ++S + ++ ++ ++ S SS ++ ++S + +S + + S
Sbjct: 267 VSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSS 326
Query: 865 SVKYDSFPGLNLLDEV--EVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNED 922
S + S ++ EV E VSS + +++ + SS +SS S+
Sbjct: 327 SSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSE-VSSSSQVTSSSEIVSSSSEVSSSSS 385
Query: 923 PELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQAS-TQSPDQLSVHSQSLTNPVRVP 981
+ E + + + +S S S + +SSS + +S S ++S SQ +++ V
Sbjct: 386 EVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVS 445
Query: 982 SSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKT-MVSPSVDLMLMASRE 1040
SS++ V+ EV +S + + S SS V+S +Q + +VS S ++ +S
Sbjct: 446 SSSE----VSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV 501
Query: 1041 ANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCS 1084
+ E +S + V + S+ S++ S SS+ V + IS S
Sbjct: 502 VSSSSEVSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVISSS 543
Score = 130 (50.8 bits), Expect = 0.00048, P = 0.00048
Identities = 89/401 (22%), Positives = 177/401 (44%)
Query: 754 NSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSL 813
+S ++V S + EV+ ++ E++ S + Q IS + S EV +S
Sbjct: 275 SSSSEVSSSSEVSSSSEVS--SSSEVSSSSEVSSSSQVISSSEVVSSSS-----EVVSS- 326
Query: 814 QTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPG 873
+ + +S E + ++ SS+ S+ E + +S + + SS + S
Sbjct: 327 -SSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSS 385
Query: 874 LNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNE-DPELLLVKETP 932
+ EV ++ VSS + +++ + SS +S + S+E ++ +
Sbjct: 386 EVVSSSSEVSSSSEV--VSSSSE-VSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSE 442
Query: 933 AMDDNNTMASPG---SLSKDGNSSSTIFQAS-TQSPDQLSVHSQSLTNPVRVPSSAQPEM 988
+ ++ ++S S S + +SSS + +S S Q++ S+ +++ V SS+ E+
Sbjct: 443 VVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSS-EV 501
Query: 989 V-----VTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKT-MVSPSVDLMLMASREAN 1042
V V+ EV +S + + S SS V+S +Q + +VS S ++ +S +
Sbjct: 502 VSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS 561
Query: 1043 RRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCS-LCRSPLGLPENHLYVRC 1101
E +S + V + S+ S++ S SS+ V + IS S + S + + V
Sbjct: 562 SSSEVSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSS 619
Query: 1102 S--VTSSAKAHLVSLLKQRQELCAN--VTSIPVIMTDISSV 1138
S V+SS++ S + E+ ++ VTS I++ S V
Sbjct: 620 SSEVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEV 660
>UNIPROTKB|Q59SG9 [details] [associations]
symbol:PGA55 "Flocculin-like protein" species:237561
"Candida albicans SC5314" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0009986 "cell surface" evidence=ISS] CGD:CAL0003874
GO:GO:0009986 EMBL:AACQ01000152 RefSeq:XP_712591.1 GeneID:3645784
KEGG:cal:CaO19.207 Uniprot:Q59SG9
Length = 1404
Score = 136 (52.9 bits), Expect = 0.00011, P = 0.00011
Identities = 76/344 (22%), Positives = 153/344 (44%)
Query: 752 LENSDNDVDHVSSMDQCKEVTKQNTQELNKSDH---SGQNVQSISKYDPFSHQKSQGNFE 808
+ +S V S + EV+ ++ E++ S S + V S S+ S + + E
Sbjct: 209 VSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVTSSSEIVSSSSEVSSSSSEVVSSSSE 266
Query: 809 VQTSLQTDQNNSCIEYI-DLERMNDKNNHSIDSSKGSTRKENKKLNSYD---NSGQKLHS 864
V +S + ++S + ++ ++ ++ S SS ++ ++S + +S + + S
Sbjct: 267 VSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVSSSSEVVSS 326
Query: 865 SVKYDSFPGLNLLDEV--EVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNED 922
S + S ++ EV E VSS + +++ + SS +SS S+
Sbjct: 327 SSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSE-VSSSSQVTSSSEIVSSSSEVSSSSS 385
Query: 923 PELLLVKETPAMDDNNTMASPGSLSKDGNSSSTIFQAS-TQSPDQLSVHSQSLTNPVRVP 981
+ E + + + +S S S + +SSS + +S S ++S SQ +++ V
Sbjct: 386 EVVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSEVVS 445
Query: 982 SSAQPEMVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKT-MVSPSVDLMLMASRE 1040
SS++ V+ EV +S + + S SS V+S +Q + +VS S ++ +S
Sbjct: 446 SSSE----VSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSSEV 501
Query: 1041 ANRRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCS 1084
+ E +S + V + S+ S++ S SS+ V + IS S
Sbjct: 502 VSSSSEVSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVISSS 543
Score = 130 (50.8 bits), Expect = 0.00048, P = 0.00048
Identities = 89/401 (22%), Positives = 177/401 (44%)
Query: 754 NSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTSL 813
+S ++V S + EV+ ++ E++ S + Q IS + S EV +S
Sbjct: 275 SSSSEVSSSSEVSSSSEVS--SSSEVSSSSEVSSSSQVISSSEVVSSSS-----EVVSS- 326
Query: 814 QTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVKYDSFPG 873
+ + +S E + ++ SS+ S+ E + +S + + SS + S
Sbjct: 327 -SSEVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSS 385
Query: 874 LNLLDEVEVQEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNE-DPELLLVKETP 932
+ EV ++ VSS + +++ + SS +S + S+E ++ +
Sbjct: 386 EVVSSSSEVSSSSEV--VSSSSE-VSSSSEVSSSSEVSSSSEVSSSSEVSSSSQVISSSE 442
Query: 933 AMDDNNTMASPG---SLSKDGNSSSTIFQAS-TQSPDQLSVHSQSLTNPVRVPSSAQPEM 988
+ ++ ++S S S + +SSS + +S S Q++ S+ +++ V SS+ E+
Sbjct: 443 VVSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEVSSSSS-EV 501
Query: 989 V-----VTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKT-MVSPSVDLMLMASREAN 1042
V V+ EV +S + + S SS V+S +Q + +VS S ++ +S +
Sbjct: 502 VSSSSEVSSSSEVVSSSSEVSSSSEVSSSSEVSSSSQVISSSEIVSSSSEVSSSSSEVVS 561
Query: 1043 RRIEFNSETNYVKNKSKTSNNCAESHLSSTPVMDKTLQISCS-LCRSPLGLPENHLYVRC 1101
E +S + V + S+ S++ S SS+ V + IS S + S + + V
Sbjct: 562 SSSEVSSSSEVVSSSSEVSSSSEVS--SSSEVSSSSQVISSSEVVSSSSEVVSSSSEVSS 619
Query: 1102 S--VTSSAKAHLVSLLKQRQELCAN--VTSIPVIMTDISSV 1138
S V+SS++ S + E+ ++ VTS I++ S V
Sbjct: 620 SSEVSSSSEVSSSSEVSSSSEVSSSSQVTSSSEIVSSSSEV 660
>FB|FBgn0036203 [details] [associations]
symbol:Muc68D "Mucin 68D" species:7227 "Drosophila
melanogaster" [GO:0016490 "structural constituent of peritrophic
membrane" evidence=ISS] [GO:0005576 "extracellular region"
evidence=IEA] [GO:0008061 "chitin binding" evidence=IEA]
[GO:0006030 "chitin metabolic process" evidence=IEA] [GO:0031012
"extracellular matrix" evidence=ISM] [GO:0005201 "extracellular
matrix structural constituent" evidence=ISM] InterPro:IPR002557
Pfam:PF01607 PROSITE:PS50940 SMART:SM00494 GO:GO:0005576
EMBL:AE014296 eggNOG:NOG12793 GO:GO:0031012 GO:GO:0008061
GO:GO:0005201 CAZy:CBM14 Gene3D:2.170.140.10 SUPFAM:SSF57625
GO:GO:0006030 GeneTree:ENSGT00700000104174 EMBL:AY075323
RefSeq:NP_648504.2 UniGene:Dm.20068 SMR:Q9VTN2 MINT:MINT-900668
STRING:Q9VTN2 EnsemblMetazoa:FBtr0076119 GeneID:39326
KEGG:dme:Dmel_CG6004 UCSC:CG6004-RB CTD:39326 FlyBase:FBgn0036203
InParanoid:Q9VTN2 OMA:STESSQD OrthoDB:EOG4WSTSF GenomeRNAi:39326
NextBio:813085 Uniprot:Q9VTN2
Length = 1514
Score = 138 (53.6 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 69/326 (21%), Positives = 132/326 (40%)
Query: 753 ENSDNDVDHVSSMDQCKEVTKQNTQELNKSDHSGQNVQSISKYDPFSHQKSQGNFEVQTS 812
+ S + + S + E T +++ + D + Q S S P S + S +S
Sbjct: 440 QESSSSTEGPLSTESSTEATNESSSTESSQDSTTQESSS-STEGPLSTESSTEATNESSS 498
Query: 813 LQTDQNNSCIEYIDLERMNDKNNHSIDSSKGSTRKENKKLNSYDNSGQKLHSSVK--YDS 870
++ Q+++ E + + S +SS +T + + +S D++ Q+ SS + +
Sbjct: 499 TESSQDSTTQE----SSSSSEGPLSTESSTEATNESSSTESSQDSTTQESSSSTESPLST 554
Query: 871 FPGL--NLLDEVEV-QEFVQLDRVSSCKDYINTQCSLQKSSRCCEASSMPFSNEDPELLL 927
P N E Q+ + SS +D ++T+ S + ++ S S E
Sbjct: 555 EPSTEANESSSTESSQDSTTQESSSSTEDPLSTESSTEATNESSSTESSQDSTTQ-ESSS 613
Query: 928 VKETPAMDDNNTMASPGSLSKDGNSSSTIFQASTQSPDQLSVHSQSLTNPVRVPSSAQPE 987
E P +++T S S S + + ST ++S+ + LS + N S+Q
Sbjct: 614 STEGPLSTESSTEGSNESSSTESSQDSTTQKSSSSTESPLSTEPSTEANESSSTESSQDS 673
Query: 988 MVVTPEKEVTGDTSNLPPERDSSLSSSVNSHTQKRRKTMVSPSVDLMLMASREANRRIEF 1047
G S P + SS+ +S +++ S L +S EAN E
Sbjct: 674 TTQESSSSTEGPLSTEPSTEANESSSTESSQDSTTQESSSSSEGPLSTESSTEAN---ES 730
Query: 1048 NSETNYVKNKSKTSNNCAESHLSSTP 1073
+S + + ++ S++ ES LS+ P
Sbjct: 731 SSTESSQDSTTQESSSSTESPLSTEP 756
Score = 50 (22.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 21/109 (19%), Positives = 46/109 (42%)
Query: 518 TSVISTGPD-NYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKKPLFVEPKGGSQED 576
T++IS+ + ++ + S ++ G K+ L Q S +++ P+ EP G+ +D
Sbjct: 233 TTIISSSTEGSWESHISTDSSIGSKVESLLIEALYSLIQESSSSSESPVSNEPSTGATDD 292
Query: 577 FEIVLKHYYNSISQGSKCAXXXXXXXXXEGNNDLNTIESQENANKKGAS 625
++ S E N+ ++ ES N++ + +S
Sbjct: 293 SSSTESLPDSTQESSSSSESPVSFELSTEATNESSSSESLPNSSTQDSS 341
Score = 49 (22.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 373 QEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSS 420
QE++ S + P+ E +T+A E++ TES + S + EG S+
Sbjct: 406 QESSSSTEG-PLSTESSTEATNESSSTESSQDSTTQESSSSTEGPLST 452
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.130 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1269 1239 0.00079 124 3 11 23 0.43 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 111
No. of states in DFA: 627 (67 KB)
Total size of DFA: 573 KB (2258 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 135.29u 0.10s 135.39t Elapsed: 00:00:06
Total cpu time: 135.33u 0.11s 135.44t Elapsed: 00:00:06
Start: Tue May 21 12:08:54 2013 End: Tue May 21 12:09:00 2013
WARNINGS ISSUED: 1