Query 000814
Match_columns 1269
No_of_seqs 205 out of 1740
Neff 5.7
Searched_HMMs 29240
Date Tue Mar 26 15:55:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000814.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_586-590//hhsearch_pdb/000814hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 1.0 1 1 673.5 34.8 562 29-742 2-614 (620)
2 3crv_A XPD/RAD3 related DNA he 1.0 1 1 563.1 34.7 495 29-723 2-544 (551)
3 2vl7_A XPD; helicase, unknown 1.0 1 1 504.7 18.6 496 27-716 4-536 (540)
4 3tbk_A RIG-I helicase domain; 1.0 1 1 89.1 12.9 137 28-297 2-141 (555)
5 4gl2_A Interferon-induced heli 1.0 1 1 89.1 8.2 137 28-295 5-148 (699)
6 3fe2_A Probable ATP-dependent 1.0 1 1 88.7 14.4 156 12-298 25-191 (242)
7 4a2p_A RIG-I, retinoic acid in 1.0 1 1 88.3 11.3 139 26-297 3-144 (556)
8 1qde_A EIF4A, translation init 1.0 1 1 88.1 11.2 158 3-297 1-169 (224)
9 1fuu_A Yeast initiation factor 1.0 1 1 87.6 10.9 135 27-297 39-176 (394)
10 3ber_A Probable ATP-dependent 1.0 1 1 86.9 14.4 138 26-298 60-201 (249)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=1.00 E-value=1 Score=673.49 Aligned_cols=562 Identities=21% Similarity=0.303 Sum_probs=382.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998999999999999985210796108997778984468999999999998110110001247999852235767799
Q 000814 29 YQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANG 108 (1269)
Q Consensus 29 y~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~~ 108 (1269)
|+|||+|++||.+|++++.++ +++++|||||||||+++|+|++.|+..
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~-----~~~~~~apTGtGKT~a~l~p~l~~~~~--------------------------- 49 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKS-----YGVALESPTGSGKTIMALKSALQYSSE--------------------------- 49 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHS-----SEEEEECCTTSCHHHHHHHHHHHHHHH---------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHHHHH---------------------------
T ss_conf 989878999999999999769-----988998899997799999999986660---------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCCEEEECCCCCCCC-CC
Q ss_conf 998888899999999960357885210011136999499964554469999999983079--866799802444334-10
Q 000814 109 GGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCT-NK 185 (1269)
Q Consensus 109 ~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~--rvk~~vL~SR~~lCi-n~ 185 (1269)
..++|+|+||||+|..|+++|++++.. .+++++|+||++||| |+
T Consensus 50 ---------------------------------~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~~~~l~gr~~lC~~~~ 96 (620)
T 4a15_A 50 ---------------------------------RKLKVLYLVRTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCILYR 96 (620)
T ss_dssp ---------------------------------HTCEEEEEESSHHHHHHHHHHHHHHHHHSCCCEEECCCHHHHCSSHH
T ss_pred ---------------------------------CCCEEEEECCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCH
T ss_conf ---------------------------------49769998887999999999999986005847999977876434575
Q ss_pred CCCCC--CCHHH---HHHHHHCC----CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 00023--37089---99975159----99999200113311199876779888646735688604356674899999981
Q 000814 186 YVRDK--ENIDE---ECKLLLGD----RNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMA 256 (1269)
Q Consensus 186 ~v~~~--e~i~e---~C~~L~~~----~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~ 256 (1269)
.+... ...++ .|+.+.++ ....|+||.+..+....... ...++.|++++++.|+.++.||||++|+.+
T Consensus 97 ~~~~~~~~~~~~~~~~C~~l~~~~~~~~~~~C~~~~~~~~~gd~~~~---l~~~~~die~l~~~~~~~~~CPy~~aR~~~ 173 (620)
T 4a15_A 97 MVDDLHEINAESLAKFCNMKKREVMAGNEAACPYFNFKIRSDETKRF---LFDELPTAEEFYDYGERNNVCPYESMKAAL 173 (620)
T ss_dssp HHCCCSSCCHHHHHHHHHHHHHHHHTTCTTSSTTCSGGGGCHHHHHH---HHHHCCCHHHHHHHHHHTTCCHHHHHHHHG
T ss_pred HHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCCCHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 65540531034678887877741135787879765355732125677---505799999999975646979029999776
Q ss_pred CCCCEEEECCCCCCCHHHHHH----HCCCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 149599801642135865532----1039786389860412479999872365029999999999999750059402689
Q 000814 257 DDAQLVFCPYSYIINPVIRGA----MEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQP 332 (1269)
Q Consensus 257 ~~ADIII~nYnyLldp~iR~~----l~Idl~~~ivIfDEAHNLeDva~d~~S~~LS~~~Le~l~~EL~~l~~~~~~i~~~ 332 (1269)
..|||||+||||||++.+|+. +++++++.+|||||||||+|+|++++|.+++..+|..+.+++.............
T Consensus 174 ~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~~~S~~ls~~~l~~~~~~l~~~~~~~~~~~~~ 253 (620)
T 4a15_A 174 PDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRSIGSFRISVESLNRADREAQAYGDPELSQKIH 253 (620)
T ss_dssp GGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHHHHCEEEEHHHHHHHHHHHHHTTCCEEETTEE
T ss_pred HCCCEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 55989995825644899999888861457677089997877659899886254508999999999999987653223689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHC-CCCCHHHHHHHHHHH---HHHHHHHCCCCCCCCCCC
Q ss_conf 9999999999999999876443210001256347999999980-223001799999999---999984102566676577
Q 000814 333 LIEMTQDLVGWIERRKATLAKREFQHFFSCWTGDKALRELQEA-NISRQCFPILLECAT---KAIKEATDTESELPHLSG 408 (1269)
Q Consensus 333 L~e~~~~L~~~L~~~k~~l~k~~~~~~~~~~~g~~~l~~L~e~-~i~~~~f~~Lle~l~---~~I~~~~~~e~~~~~ls~ 408 (1269)
+...+..+...+......+... .. . ....+.++..+... +.....+..++..+. +.+........ ... .
T Consensus 254 ~~~~~~~~~~~l~~~~~~~~~~-~~--~-~~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~--~~~-~ 326 (620)
T 4a15_A 254 VSDLIEMIRSALQSMVSERCGK-GD--V-RIRFQEFMEYMRIMNKRSEREIRSLLNYLYLFGEYVENEKEKVG--KVP-F 326 (620)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSS-SC--E-EECTHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTT--SCC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHCC-CC--C-CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC--CCC-C
T ss_conf 9999999999999999986054-56--6-77859999999875152679999999999999999974022235--430-0
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 53999999999989988407996414688755310128999999752079999249789899998503809996444788
Q 000814 409 MSVITLEGLFSSLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSP 488 (1269)
Q Consensus 409 ~s~~~Le~l~~sL~~~~s~~g~~i~dy~~~l~r~i~kd~~~~~~~~~~~L~l~cLdPs~~l~~Ll~~~~SVILTSGTLSP 488 (1269)
. .+..+...+..| ..... .++ ..|+++. + ...|+++|++|+..|+ ++ .++++|||||||+|
T Consensus 327 ~---~~~~~~~fl~~~-~~~~~--~~~----~~~~~~~-----~--~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p 387 (620)
T 4a15_A 327 S---YCSSVASRIIAF-SDQDE--EKY----AAILSPE-----D--GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDP 387 (620)
T ss_dssp C---HHHHHHHHHHHH-HTSCT--TTE----EEEEECG-----G--GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCS
T ss_pred C---HHHHHHHHHHHH-HHCCC--CCE----EEEEEEC-----C--CCEEEEEECCHHHHHH-HH-HCCEEEEECCCCCC
T ss_conf 3---999999999997-51677--887----9999857-----9--8479999898899999-98-47948998408974
Q ss_pred HHHHHHHHCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCC-CC--------------------CCCCCHHHHHHHHH
Q ss_conf 3766875379888300079766878819999754698885555-55--------------------44652499999999
Q 000814 489 MNSFSSELGVQFGTCLEAPHVIDVDLQVLTSVISTGPDNYPLN-AS--------------------YKTADGYKLMEKLC 547 (1269)
Q Consensus 489 ldsF~~~LGl~f~~~Le~phvi~~e~Qilv~vIs~gP~ny~l~-~S--------------------y~~~dsY~lLe~i~ 547 (1269)
+++|...||++ ...++.+|+|+++++. +.++..-|..|... .. ....++|.+|+++.
T Consensus 388 ~~~~~~~lGl~-~~~~~~~spf~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~ 465 (620)
T 4a15_A 388 FDFYSDITGFE-IPFKKIGEIFPPENRY-IAYYDGVSSKYDTLDEKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVE 465 (620)
T ss_dssp HHHHHHHHCCC-CCEEECCCCSCGGGEE-EEEECCC-------CHHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHT
T ss_pred HHHHHHHHCCC-CEEEECCCCCCHHHEE-EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHH
T ss_conf 89999981997-5653468998889907-998479997677889899999999999999858998899907999999999
Q ss_pred HHHHHCCCCCHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEE
Q ss_conf 99998083101106886999069999789999999999986217712366554330038887412355320055782899
Q 000814 548 NRWRETGQWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFL 627 (1269)
Q Consensus 548 ~~w~e~g~~~rI~~~K~IFiE~rg~s~~~~~svL~~f~~si~~g~~~~~~~~~~~kk~~~~~~~~~e~~~~~~~~GAVLf 627 (1269)
+.|+. + ..+ |++|++..+.+.+++.|. ++|+|||
T Consensus 466 ~~l~~------~--~~~---~~q~~~~~~~~~ll~~f~-----------------------------------~~~~vL~ 499 (620)
T 4a15_A 466 NRVSF------E--HMK---EYRGIDQKELYSMLKKFR-----------------------------------RDHGTIF 499 (620)
T ss_dssp SSCCS------C--CEE---CCTTCCSHHHHHHHHHHT-----------------------------------TSCCEEE
T ss_pred HHHHH------C--CHH---CCCCCCHHHHHHHHHHHC-----------------------------------CCCCEEE
T ss_conf 99985------0--511---068997668999999861-----------------------------------6885899
Q ss_pred EEECCCEEECCCCCCCCCEEEEE-ECCCC--CHHHHHCC----CCCCCCC---HHHHHHHHHHHHCCCCCCCCCCEEEEE
Q ss_conf 86326301002479997219998-02220--03542102----4799711---399999999981595322699839999
Q 000814 628 AVCRGKIVVGIPFPNINDIQVSL-KKKYN--DTYRSSKN----LLSGNEW---YCNQAFRALNQAIGRCIRHRFDYGAII 697 (1269)
Q Consensus 628 AV~rGKlSEGIDF~gd~lR~VII-K~~y~--d~~~~~k~----~~~G~~W---Y~~~AiRaVnQAIGRvIRhk~DyGvII 697 (1269)
||+||+|||||||+|+.+|+||| +.||. ++...++. ..+|++| |..+|+++++||+||+|||++|||+|+
T Consensus 500 ~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~ 579 (620)
T 4a15_A 500 AVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACV 579 (620)
T ss_dssp EETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEE
T ss_pred EEECCCEECCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEEE
T ss_conf 97257400132489986279999768989889999999999998538980587699999999998575655778669999
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 981244413567699999996335678734569999999998320
Q 000814 698 LLDERFQEERNRAHISKWLRKSIKQYDSFDASLEGLKSFFRDVKG 742 (1269)
Q Consensus 698 LLD~Rf~~~~~~~~LpkWir~~i~~~~~f~~~~~~lr~FF~~~k~ 742 (1269)
|+|+|| ++|++.||+ ++..+. ..+++..||.+...
T Consensus 580 llD~R~--~~~~~~LP~-~~~~~~-------~~~~~~~f~~~~~~ 614 (620)
T 4a15_A 580 ILDKRA--GQFRKFIPD-MKKTSD-------PASDIYNFFISAQA 614 (620)
T ss_dssp EECGGG--GGGGGGSTT-CEEESC-------HHHHHHHHHHHHHT
T ss_pred EECCCH--HHHHHHCCC-HHHHCC-------CHHHHHHHHHCHHH
T ss_conf 981456--999876871-453068-------48999999838265
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=1.00 E-value=1 Score=563.13 Aligned_cols=495 Identities=20% Similarity=0.273 Sum_probs=336.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99998999999999999985210796108997778984468999999999998110110001247999852235767799
Q 000814 29 YQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLANG 108 (1269)
Q Consensus 29 y~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~~ 108 (1269)
|++||.|.+||..|++++..+ .++++|||||||||+++|+|++.+
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~-----~~~~~~a~TGtGKT~~~l~p~l~~------------------------------ 46 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNN-----FLVALNAPTGSGKTLFSLLVSLEV------------------------------ 46 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT-----CEEEEECCTTSSHHHHHHHHHHHH------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHC------------------------------
T ss_conf 988889999999999999739-----968998899950899999999967------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCC--CCCCEEEECCCCCCCCCCC
Q ss_conf 99888889999999996035788521001113699949996455446999999998307--9866799802444334100
Q 000814 109 GGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTA--YRVPMAVLASRKHYCTNKY 186 (1269)
Q Consensus 109 ~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~--~rvk~~vL~SR~~lCin~~ 186 (1269)
.++|+|+|+|+.+..|+.+|++++. ..+++++++||++||+++.
T Consensus 47 ----------------------------------~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~gr~~~c~~~~ 92 (551)
T 3crv_A 47 ----------------------------------KPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLVGKPSSCLYAE 92 (551)
T ss_dssp ----------------------------------CSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECCCHHHHCTTBC
T ss_pred ----------------------------------CCEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCH
T ss_conf ----------------------------------9829999188899999999999986524852799726412476830
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH----CCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 002337089999751599999920011331119987677988864673568860----4356674899999981149599
Q 000814 187 VRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNV----GQVVRGCSYYAARSMADDAQLV 262 (1269)
Q Consensus 187 v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~----g~~~~~CPYy~sR~~~~~ADII 262 (1269)
+. .......|+ .|+||.+..+.. ...+++++++. |+.++.||||.+|+.+..||||
T Consensus 93 ~~-~~~~~~~c~--------~c~~~~~~~~~g-----------~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIV 152 (551)
T 3crv_A 93 KG-AESEDIPCK--------YCELKGSIVEVK-----------TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVI 152 (551)
T ss_dssp TT-CCGGGCCGG--------GCTTTTCCCCCC-----------CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEE
T ss_pred HC-CCCCCCCCC--------CCCCCCCCCCCC-----------CCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCEE
T ss_conf 02-788543359--------999966654124-----------6699999999999749717828359999664269999
Q ss_pred EECCCCCCCHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 80164213586553210397863898604124799998723650299999999999997500594026899999999999
Q 000814 263 FCPYSYIINPVIRGAMEVDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDLVG 342 (1269)
Q Consensus 263 I~nYnyLldp~iR~~l~Idl~~~ivIfDEAHNLeDva~d~~S~~LS~~~Le~l~~EL~~l~~~~~~i~~~L~e~~~~L~~ 342 (1269)
|+||+|||++.++..+++.++..+|||||||||++ |++++|.+|+...+..+..++...... ..+..+..
T Consensus 153 V~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~---------~~l~~l~~ 222 (551)
T 3crv_A 153 ALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESR---------RILSKLLN 222 (551)
T ss_dssp EEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHH---------HHHHHHHH
T ss_pred EECCHHHCCHHHHHHCCCCCCCEEEEEECCCCHHH-HHHHHCEECCHHHHHHHHHHHHHHHHH---------HHHHHHHH
T ss_conf 96806745899998617785770999965456577-877644323799999999999987779---------99999999
Q ss_pred HHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999987644321000125-63479999999802230017999999999999841025666765775399999999998
Q 000814 343 WIERRKATLAKREFQHFFSC-WTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFSSL 421 (1269)
Q Consensus 343 ~L~~~k~~l~k~~~~~~~~~-~~g~~~l~~L~e~~i~~~~f~~Lle~l~~~I~~~~~~e~~~~~ls~~s~~~Le~l~~sL 421 (1269)
.+... +...+ .+... ...+...+.+. .+.+.+.+......... +.. .. .+..+...+
T Consensus 223 ~l~~~---~~~~~--~~~~~~~~~~~~~~~l~----------~l~~~l~~~~~~~~~~~---~~~-~~---~~~~l~~~~ 280 (551)
T 3crv_A 223 QLREV---VLPDE--KYIKVENVPKLSKEELE----------ILADDYEDIRKDSLKQG---KVN-KI---HIGSILRFF 280 (551)
T ss_dssp HHTTS---CCSCS--SCEECSCCCCCCHHHHH----------HHHHHHHHHHHHHHHTT---CBC-CC---HHHHHHHHH
T ss_pred HHHHH---HHCCC--CCCCCCCCHHHHHHHHH----------HHHHHHHHHHHHHHHCC---CCC-CC---HHHHHHHHH
T ss_conf 99998---63135--43146568078899999----------99999999998664338---866-53---699999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCC-CEEEEECCCCCCHHHHHHHHCCCC
Q ss_conf 9988407996414688755310128999999752079999249789899998503-809996444788376687537988
Q 000814 422 TYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELS-LSIILTSGTLSPMNSFSSELGVQF 500 (1269)
Q Consensus 422 ~~~~s~~g~~i~dy~~~l~r~i~kd~~~~~~~~~~~L~l~cLdPs~~l~~Ll~~~-~SVILTSGTLSPldsF~~~LGl~f 500 (1269)
..|.. .+ .+ + ... + . .|+++|++|+..|+ ++..+ +++|||||||+|+++|...||+++
T Consensus 281 ~~~~~-~~----~~---v---~~~------~--~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~ 339 (551)
T 3crv_A 281 SLLSI-GS----FI---P---FSY------S--K-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKR 339 (551)
T ss_dssp HHHHH-SS----CE---E---EEE------T--T-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCS
T ss_pred HHHHC-CC----CE---E---ECC------C--C-EEEEEECCHHHHHH-HHHCCCCEEEEEEECCCCHHHHHHHHCCCC
T ss_conf 99844-69----85---9---646------9--9-89999799799999-986058569997127896799999858997
Q ss_pred CC-----EEECCCCCCCCCCEEEEECCCCCCCCCCC-CC--------------------CCCCCHHHHHHHHHHHHHHCC
Q ss_conf 83-----00079766878819999754698885555-55--------------------446524999999999999808
Q 000814 501 GT-----CLEAPHVIDVDLQVLTSVISTGPDNYPLN-AS--------------------YKTADGYKLMEKLCNRWRETG 554 (1269)
Q Consensus 501 ~~-----~Le~phvi~~e~Qilv~vIs~gP~ny~l~-~S--------------------y~~~dsY~lLe~i~~~w~e~g 554 (1269)
+. .+..+||| .+ |..+.+...-|..+... .. ....++|.+|+++.+.
T Consensus 340 ~~~~~~~~~~~~spf-~~-~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----- 412 (551)
T 3crv_A 340 NMLYLDVEREIQKRV-SG-SYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR----- 412 (551)
T ss_dssp CEEEEEHHHHTTSCC-SC-EEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----
T ss_pred CCCCCCCEEECCCCC-CC-CEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHH-----
T ss_conf 633222035527757-77-52799957878742327989999999999999972899779996499999999986-----
Q ss_pred CCCHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCE
Q ss_conf 31011068869990699997899999999999862177123665543300388874123553200557828998632630
Q 000814 555 QWSRLNAKKPLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKI 634 (1269)
Q Consensus 555 ~~~rI~~~K~IFiE~rg~s~~~~~svL~~f~~si~~g~~~~~~~~~~~kk~~~~~~~~~e~~~~~~~~GAVLfAV~rGKl 634 (1269)
..+++|+|+++++. +.+++.|. .. +++|||||+||+|
T Consensus 413 ------~~~~v~~q~~~~~~---~~~~~~~~---------------------------------~~-~~~vl~~v~gg~~ 449 (551)
T 3crv_A 413 ------ISLPKYVESEDSSV---EDLYSAIS---------------------------------AN-NKVLIGSVGKGKL 449 (551)
T ss_dssp ------CCSSEEECCSSCCH---HHHHHHTT---------------------------------SS-SSCEEEEESSCCS
T ss_pred ------CCCCEEECCCCCCH---HHHHHHHH---------------------------------HC-CCEEEEEEECCEE
T ss_conf ------19858986999988---99999997---------------------------------26-9839999855620
Q ss_pred EECCCCC---CCCCEEEEE-ECCCC--CHHHHHCC-----CCCCCCC---HHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
Q ss_conf 1002479---997219998-02220--03542102-----4799711---399999999981595322699839999981
Q 000814 635 VVGIPFP---NINDIQVSL-KKKYN--DTYRSSKN-----LLSGNEW---YCNQAFRALNQAIGRCIRHRFDYGAIILLD 700 (1269)
Q Consensus 635 SEGIDF~---gd~lR~VII-K~~y~--d~~~~~k~-----~~~G~~W---Y~~~AiRaVnQAIGRvIRhk~DyGvIILLD 700 (1269)
||||||+ |+.+|+||| +.||. |+...++. ..++++| |..+|+++++||+||+|||++|||+|+|+|
T Consensus 450 ~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD 529 (551)
T 3crv_A 450 AEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLD 529 (551)
T ss_dssp CCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEES
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEE
T ss_conf 36645555677653499998379999899999999999986487416888788999999997256736888528999960
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 24441356769999999633567
Q 000814 701 ERFQEERNRAHISKWLRKSIKQY 723 (1269)
Q Consensus 701 ~Rf~~~~~~~~LpkWir~~i~~~ 723 (1269)
+||.+ +|++..++++
T Consensus 530 ~R~~~--------~~~~~~~~~~ 544 (551)
T 3crv_A 530 KRFES--------LYWKKNLKCL 544 (551)
T ss_dssp GGGGS--------HHHHHHTTCT
T ss_pred HHCCC--------CHHHHHCEEC
T ss_conf 01052--------0345404527
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=1.00 E-value=1 Score=504.74 Aligned_cols=496 Identities=18% Similarity=0.242 Sum_probs=308.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 88999989999999999999852107961089977789844689999999999981101100012479998522357677
Q 000814 27 FPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLA 106 (1269)
Q Consensus 27 FPy~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~ 106 (1269)
.+|+|||.|.++|..|+.++.++ .++++|||||||||+++|+|++.+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~-----~~~~~~a~TGtGKT~~~l~~~~~~---------------------------- 50 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHG-----KTLLLNAKPGLGKTVFVEVLGMQL---------------------------- 50 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-----CEEEEECCTTSCHHHHHHHHHHHH----------------------------
T ss_pred CCCCCCHHHHHHHHHHHHHHHCC-----CCEEEECCCCCCHHHHHHHHHHHC----------------------------
T ss_conf 78998989999999999999829-----978998589986789999999957----------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCC
Q ss_conf 99998888899999999960357885210011136999499964554469999999983079866799802444334100
Q 000814 107 NGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYRVPMAVLASRKHYCTNKY 186 (1269)
Q Consensus 107 ~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~rvk~~vL~SR~~lCin~~ 186 (1269)
.++|+|+|+|+++..|+++|++++ .+++++++||+++|+++.
T Consensus 51 ------------------------------------~~~~~~~~~t~~l~~q~~~~~~~l--~~~~~~l~gr~~lC~~~~ 92 (540)
T 2vl7_A 51 ------------------------------------KKKVLIFTRTHSQLDSIYKNAKLL--GLKTGFLIGKSASCIYAQ 92 (540)
T ss_dssp ------------------------------------TCEEEEEESCHHHHHHHHHHHGGG--TCCEEEC-----------
T ss_pred ------------------------------------CCCEEEECCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCCCCH
T ss_conf ------------------------------------993899928899999999999854--983798527765257801
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECC
Q ss_conf 00233708999975159999992001133111998767798886467356886043566748999999811495998016
Q 000814 187 VRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPY 266 (1269)
Q Consensus 187 v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII~nY 266 (1269)
+.... .+..|. .|+++.+...... ..+.+.+..++...+.||||.+|+.+..|||||+||
T Consensus 93 ~~~~~-~~~~c~--------~c~~~~~~~~~gd-----------~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~ 152 (540)
T 2vl7_A 93 GDEEP-DEINCS--------KCRLKDKIKTIED-----------KEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTY 152 (540)
T ss_dssp ------------------------------------------------------------------CTTGGGCSEEEEET
T ss_pred HCCCC-CCCCCC--------CCCCHHCCCCCCC-----------CCCHHHHHHHHHHCCCCHHHHHHHHHHCCCEEEECH
T ss_conf 12365-455789--------8873000440136-----------781899999746548990899998741599999882
Q ss_pred CCCCCHHHHHHHC------CCCCCCEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 4213586553210------3978638986041247999987236502999999999999975005940268999999999
Q 000814 267 SYIINPVIRGAME------VDIKGAILILDEAHNIEDIARDAGSVDIDEDVLLKLQMELEQVCSVNPMIYQPLIEMTQDL 340 (1269)
Q Consensus 267 nyLldp~iR~~l~------Idl~~~ivIfDEAHNLeDva~d~~S~~LS~~~Le~l~~EL~~l~~~~~~i~~~L~e~~~~L 340 (1269)
+|||++..++.++ +.++..+|||||||||++ +++++|.+++...+..+..++.............+...+..+
T Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l 231 (540)
T 2vl7_A 153 PYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLL 231 (540)
T ss_dssp HHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHCCHHHHHHHCCCCCCCCCCCCCEEEEECCCCHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 7965888997607443333376788899975045788-998746500799999999999998722454599999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999998764432100012-5634799999998022300179999999999998410256667657753999999999
Q 000814 341 VGWIERRKATLAKREFQHFFS-CWTGDKALRELQEANISRQCFPILLECATKAIKEATDTESELPHLSGMSVITLEGLFS 419 (1269)
Q Consensus 341 ~~~L~~~k~~l~k~~~~~~~~-~~~g~~~l~~L~e~~i~~~~f~~Lle~l~~~I~~~~~~e~~~~~ls~~s~~~Le~l~~ 419 (1269)
..++.... .......+.. .+.....+ +.+...+....+.... . ... . .++.+
T Consensus 232 ~~~l~~~~---~~~~~~~~~~~~~~~~~~l-----------------~~l~~~~~~~~~~~~~-~-~~~-~--~l~~~-- 284 (540)
T 2vl7_A 232 IDYMSKLI---KDGRCHELSLMPLPDRETN-----------------GELIVVTRAYLNIDEG-P-VKK-S--SLKSL-- 284 (540)
T ss_dssp HHHHHTSC---CSSSEEEESCCCCCCHHHH-----------------HHHHHHHHHHHTTCCS-S-SCC-C--HHHHH--
T ss_pred HHHHHHHH---CCCCCCCHHHCCCCCHHHH-----------------HHHHHHHHHHHHHHCC-C-CCH-H--HHHHH--
T ss_conf 99999861---6565012654254237899-----------------9999999999976406-7-208-9--99999--
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHEECCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCEEEEECCCCCCH----HHH---
Q ss_conf 9899884079964146887553101289999997520799992497898999985038099964447883----766---
Q 000814 420 SLTYFFSRNGSHVSDYQLALQKYIKRDSKNPGGNWTHTLSLWCLNPAVVFKDVAELSLSIILTSGTLSPM----NSF--- 492 (1269)
Q Consensus 420 sL~~~~s~~g~~i~dy~~~l~r~i~kd~~~~~~~~~~~L~l~cLdPs~~l~~Ll~~~~SVILTSGTLSPl----dsF--- 492 (1269)
+.++ ..++ . ..|. . + .|.+.|.+....+.+.+....++|||||||+|+ +.|
T Consensus 285 -l~~~-~~~~-~--------~~~~--~-----~----~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~~~ 342 (540)
T 2vl7_A 285 -LKFV-EMKG-D--------LYNC--N-----G----SLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYKIV 342 (540)
T ss_dssp -HHHH-HSCC-E--------EEEE--T-----T----EEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEEEE
T ss_pred -HHHH-HHCC-C--------EEEE--C-----C----EEEEEHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHCCCC
T ss_conf -9999-8579-7--------8988--8-----8----5998059999999971486678489710389871221230886
Q ss_pred -HHHHCCCCC-CEEECCCCCCCCCCEE-------EEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCC
Q ss_conf -875379888-3000797668788199-------9975469888555555446524999999999999808310110688
Q 000814 493 -SSELGVQFG-TCLEAPHVIDVDLQVL-------TSVISTGPDNYPLNASYKTADGYKLMEKLCNRWRETGQWSRLNAKK 563 (1269)
Q Consensus 493 -~~~LGl~f~-~~Le~phvi~~e~Qil-------v~vIs~gP~ny~l~~Sy~~~dsY~lLe~i~~~w~e~g~~~rI~~~K 563 (1269)
...+|.... .....+++|++..+.+ ..++...|+++.+ ..++|.+|+++.+.|. .+
T Consensus 343 ~~~~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~~~g~~lv-----ff~S~~~~~~v~~~l~----------~~ 407 (540)
T 2vl7_A 343 VNESYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYENSSKSVLV-----FFPSYEMLESVRIHLS----------GI 407 (540)
T ss_dssp CCCC-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHTCSSEEEE-----EESCHHHHHHHHTTCT----------TS
T ss_pred HHHEECCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE-----EECCHHHHHHHHHHHC----------CC
T ss_conf 24223577612315558975564678999999999999738998999-----9189999999999964----------67
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCCEEEEEECCCEEECCCCCCC
Q ss_conf 69990699997899999999999862177123665543300388874123553200557828998632630100247999
Q 000814 564 PLFVEPKGGSQEDFEIVLKHYYNSISQGSKCAVVRKKRVKREGNNDLNTIESQENANKKGASFLAVCRGKIVVGIPFPNI 643 (1269)
Q Consensus 564 ~IFiE~rg~s~~~~~svL~~f~~si~~g~~~~~~~~~~~kk~~~~~~~~~e~~~~~~~~GAVLfAV~rGKlSEGIDF~gd 643 (1269)
++|+|+++.+ ++.+++.|. . ++++||+|++|+|||||||+|+
T Consensus 408 ~~~~q~~~~~---~~~~l~~f~----------------------------------~-~~~il~~V~~~~~~EGiD~~~~ 449 (540)
T 2vl7_A 408 PVIEENKKTR---HEEVLELMK----------------------------------T-GKYLVMLVMRAKESEGVEFREK 449 (540)
T ss_dssp CEEESTTTCC---HHHHHHHHH----------------------------------T-SCCEEEEEC-------------
T ss_pred CEEECCCCCC---HHHHHHHHH----------------------------------C-CCEEEEEEECCCEECCEECCCC
T ss_conf 5686699886---999999973----------------------------------6-9918999705742156101797
Q ss_pred --CCEEEEE-ECCCCC---HHHHHCC----CCCCCCC--H-HHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCHHHHH
Q ss_conf --7219998-022200---3542102----4799711--3-999999999815953226998399999812444135676
Q 000814 644 --NDIQVSL-KKKYND---TYRSSKN----LLSGNEW--Y-CNQAFRALNQAIGRCIRHRFDYGAIILLDERFQEERNRA 710 (1269)
Q Consensus 644 --~lR~VII-K~~y~d---~~~~~k~----~~~G~~W--Y-~~~AiRaVnQAIGRvIRhk~DyGvIILLD~Rf~~~~~~~ 710 (1269)
.+|+||| +.||.. +...++. ..++++| | .+.++++++||+||+|||++|||+|+|+|+||.+.+|+.
T Consensus 450 ~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~ 529 (540)
T 2vl7_A 450 ENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADL 529 (540)
T ss_dssp --CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTT
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCHHHC
T ss_conf 45433799988998999998999999999985289725778999999999871876367885379999744437542321
Q ss_pred HH-HHHH
Q ss_conf 99-9999
Q 000814 711 HI-SKWL 716 (1269)
Q Consensus 711 ~L-pkWi 716 (1269)
.| |+|+
T Consensus 530 ~l~~~~~ 536 (540)
T 2vl7_A 530 GISEKEI 536 (540)
T ss_dssp TCCTTTC
T ss_pred CCCHHHC
T ss_conf 5595451
No 4
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=89.14 Aligned_cols=137 Identities=15% Similarity=0.252 Sum_probs=88.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999899999999999998521079610899777898446899999999999811011000124799985223576779
Q 000814 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLAN 107 (1269)
Q Consensus 28 Py~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~ 107 (1269)
||+|||.|.+.+..+. ++ .++++.+|||+|||++++.+++......+
T Consensus 2 ~~~~~~~Q~~~i~~~~----~~-----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~------------------------ 48 (555)
T 3tbk_A 2 PLKPRNYQLELALPAK----KG-----KNTIICAPTGCGKTFVSLLICEHHLKKFP------------------------ 48 (555)
T ss_dssp CCCCCHHHHHHHHHHH----TT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCC------------------------
T ss_pred CCCCCHHHHHHHHHHH----CC-----CCEEEEECCCCHHHHHHHHHHHHHHHHCC------------------------
T ss_conf 9887699999999996----79-----98899959998399999999999998466------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCCEEEECCCCCCCCCC
Q ss_conf 9998888899999999960357885210011136999499964554469999999983079--86679980244433410
Q 000814 108 GGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCTNK 185 (1269)
Q Consensus 108 ~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~--rvk~~vL~SR~~lCin~ 185 (1269)
....++++|.+.|..-..|+.+++++... .+++..+.|...
T Consensus 49 --------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~----- 91 (555)
T 3tbk_A 49 --------------------------------CGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATS----- 91 (555)
T ss_dssp --------------------------------SSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTG-----
T ss_pred --------------------------------CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEECCCCC-----
T ss_conf --------------------------------6789879999688899999999999870538947999759974-----
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 00023370899997515999999200113311199876779888646735688604356674899999981149599801
Q 000814 186 YVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCP 265 (1269)
Q Consensus 186 ~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII~n 265 (1269)
. ... .+.....++|+|++
T Consensus 92 ------------------------------~--------------~~~------------------~~~~~~~~~i~v~T 109 (555)
T 3tbk_A 92 ------------------------------D--------------SVS------------------VQHIIEDNDIIILT 109 (555)
T ss_dssp ------------------------------G--------------GSC------------------HHHHHHHCSEEEEC
T ss_pred ------------------------------C--------------HHH------------------HHHHHCCCCEEEEC
T ss_conf ------------------------------0--------------122------------------89873699999978
Q ss_pred CCCCCCHHHHHHHCCCC-CCCEEEECCCCCHHH
Q ss_conf 64213586553210397-863898604124799
Q 000814 266 YSYIINPVIRGAMEVDI-KGAILILDEAHNIED 297 (1269)
Q Consensus 266 YnyLldp~iR~~l~Idl-~~~ivIfDEAHNLeD 297 (1269)
+..|.+........ .+ .-..|||||||.+.+
T Consensus 110 ~~~l~~~~~~~~~~-~~~~~~~vViDEah~~~~ 141 (555)
T 3tbk_A 110 PQILVNNLNNGAIP-SLSVFTLMIFDECHNTSK 141 (555)
T ss_dssp HHHHHHHHHTSSSC-CGGGCSEEEETTGGGCST
T ss_pred HHHHHHHHHCCCCC-CCCCCCEEEEECCCCCCC
T ss_conf 99999998607634-401077899977545687
No 5
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=1.00 E-value=1 Score=89.05 Aligned_cols=137 Identities=12% Similarity=0.149 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 89999899999999999998521079610899777898446899999999999811011000124799985223576779
Q 000814 28 PYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPLAN 107 (1269)
Q Consensus 28 Py~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~ 107 (1269)
+|+|||.|.+.+..+.+ + .++++.+|||+|||++++.+++......+..
T Consensus 5 ~~~l~~~Q~~~i~~il~----g-----~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~---------------------- 53 (699)
T 4gl2_A 5 MLQLRPYQMEVAQPALE----G-----KNIIICLPTGCGKTRVAVYIAKDHLDKKKKA---------------------- 53 (699)
T ss_dssp --CCCHHHHHHHHHHHS----S-----CCEEECCCTTSCHHHHHHHHHHHHHHHHHHH----------------------
T ss_pred CCCCCHHHHHHHHHHHH----C-----CCEEEECCCCCCHHHHHHHHHHHHHHHCCCC----------------------
T ss_conf 77724889999999983----7-----9999986999868999999999999846455----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHH-HHHHHHCCCC-CCEEEECCCCCCCCCC
Q ss_conf 9998888899999999960357885210011136999499964554469999-9999830798-6679980244433410
Q 000814 108 GGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQV-ISEYKKTAYR-VPMAVLASRKHYCTNK 185 (1269)
Q Consensus 108 ~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQv-I~ELRkl~~r-vk~~vL~SR~~lCin~ 185 (1269)
....+++|.+.|.+-..|. .+++++..-. ++++.+.|....
T Consensus 54 ---------------------------------~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~v~~~~g~~~~---- 96 (699)
T 4gl2_A 54 ---------------------------------SEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQL---- 96 (699)
T ss_dssp ---------------------------------TCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSCEEEEC----C----
T ss_pred ---------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCH----
T ss_conf ---------------------------------7888099997999999999999999971767149998578322----
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEC
Q ss_conf 00023370899997515999999200113311199876779888646735688604356674899999981149599801
Q 000814 186 YVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVFCP 265 (1269)
Q Consensus 186 ~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII~n 265 (1269)
. ... +.....++|+|++
T Consensus 97 -------------------------------------------~--~~~------------------~~~~~~~~Ilv~T 113 (699)
T 4gl2_A 97 -------------------------------------------K--ISF------------------PEVVKSCDIIIST 113 (699)
T ss_dssp -------------------------------------------C--CCH------------------HHHHHSCSEEEEE
T ss_pred -------------------------------------------H--HHH------------------HHHHCCCCEEEEC
T ss_conf -------------------------------------------1--577------------------7652379999989
Q ss_pred CCCCCCHHHHH----HHCCCC-CCCEEEECCCCCH
Q ss_conf 64213586553----210397-8638986041247
Q 000814 266 YSYIINPVIRG----AMEVDI-KGAILILDEAHNI 295 (1269)
Q Consensus 266 YnyLldp~iR~----~l~Idl-~~~ivIfDEAHNL 295 (1269)
+..|++...+. ...+.+ .-..|||||||++
T Consensus 114 p~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~ 148 (699)
T 4gl2_A 114 AQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 148 (699)
T ss_dssp HHHHHHHTC--------CCCGGGCSEEEEESGGGC
T ss_pred HHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCC
T ss_conf 89999997434334335121254768999773114
No 6
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=1.00 E-value=1 Score=88.73 Aligned_cols=156 Identities=16% Similarity=0.183 Sum_probs=95.3
Q ss_pred CCCCCCEEECCEEE-------CCCCC-CCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99987301189242-------18899-99899999999999998521079610899777898446899999999999811
Q 000814 12 RKPLNAYHVGGIQV-------EFPYQ-PYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCK 83 (1269)
Q Consensus 12 ~~~~~~f~i~GI~v-------~FPy~-pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k 83 (1269)
|++-..|.--|+.- .+.|. |++.|.+.+..+. ++ .++++.+|||+|||++++.|++......+
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~g-----~~~l~~apTGsGKT~~~~l~~l~~l~~~~ 95 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL----SG-----LDMVGVAQTGSGKTLSYLLPAIVHINHQP 95 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH----HT-----CCEEEEECTTSCHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH----CC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 9765887536999999999997799999889999999994----79-----98899889968789999999999997331
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 01100012479998522357677999988888999999999603578852100111369994999645544699999999
Q 000814 84 LKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEY 163 (1269)
Q Consensus 84 ~~~~~~~v~~~k~~~~~~~~p~~~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~EL 163 (1269)
.. .+...++++|.+.|..-..|+.+++
T Consensus 96 ~~-----------------------------------------------------~~~~~~~~lil~Pt~~L~~Q~~~~~ 122 (242)
T 3fe2_A 96 FL-----------------------------------------------------ERGDGPICLVLAPTRELAQQVQQVA 122 (242)
T ss_dssp CC-----------------------------------------------------CTTCCCSEEEECSSHHHHHHHHHHH
T ss_pred CC-----------------------------------------------------CCCCCCEEEEEECCHHHHHHHHHHH
T ss_conf 00-----------------------------------------------------0479977999967599999999999
Q ss_pred HHCCC--CCCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHC
Q ss_conf 83079--8667998024443341000023370899997515999999200113311199876779888646735688604
Q 000814 164 KKTAY--RVPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVG 241 (1269)
Q Consensus 164 Rkl~~--rvk~~vL~SR~~lCin~~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g 241 (1269)
++... .++...+.|..
T Consensus 123 ~~~~~~~~~~~~~~~g~~-------------------------------------------------------------- 140 (242)
T 3fe2_A 123 AEYCRACRLKSTCIYGGA-------------------------------------------------------------- 140 (242)
T ss_dssp HHHHHHTTCCEEEECTTS--------------------------------------------------------------
T ss_pred HHHHHHCCCEEEEEECCC--------------------------------------------------------------
T ss_conf 999844693289997897--------------------------------------------------------------
Q ss_pred CCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC-CCCEEEECCCCCHHHH
Q ss_conf 35667489999998114959980164213586553210397-8638986041247999
Q 000814 242 QVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDI 298 (1269)
Q Consensus 242 ~~~~~CPYy~sR~~~~~ADIII~nYnyLldp~iR~~l~Idl-~~~ivIfDEAHNLeDv 298 (1269)
-.....+.....++|+|++...|++...+... .+ .-..+||||||.+.+.
T Consensus 141 -----~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~--~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 141 -----PKGPQIRDLERGVEICIATPGRLIDFLECGKT--NLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp -----CHHHHHHHHHHCCSEEEECHHHHHHHHHHTSC--CCTTCCEEEETTHHHHHHT
T ss_pred -----CHHHHHHHHCCCCCEEEECHHHHHHHHHCCCC--CCCCCCEEEEECHHHHHHH
T ss_conf -----76789998457999999898999999983997--7264519999688998550
No 7
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=88.34 Aligned_cols=139 Identities=14% Similarity=0.191 Sum_probs=88.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 18899998999999999999985210796108997778984468999999999998110110001247999852235767
Q 000814 26 EFPYQPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPL 105 (1269)
Q Consensus 26 ~FPy~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~ 105 (1269)
..+++|+|.|.+.+..+ .++ .++++.+|||+|||++++.+++......+
T Consensus 3 ~~~~~~~~~Q~~~i~~~----~~~-----~~~l~~~~tGsGKT~~~~~~~~~~~~~~~---------------------- 51 (556)
T 4a2p_A 3 METKKARSYQIELAQPA----ING-----KNALICAPTGSGKTFVSILICEHHFQNMP---------------------- 51 (556)
T ss_dssp -----CCHHHHHHHHHH----HTT-----CCEEEECCTTSCHHHHHHHHHHHHHHTCC----------------------
T ss_pred CCCCCCCHHHHHHHHHH----HCC-----CCEEEECCCCCHHHHHHHHHHHHHHHHCC----------------------
T ss_conf 78778779999999999----749-----98999819997189999999999998374----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCC--CCCEEEECCCCCCCC
Q ss_conf 799998888899999999960357885210011136999499964554469999999983079--866799802444334
Q 000814 106 ANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAY--RVPMAVLASRKHYCT 183 (1269)
Q Consensus 106 ~~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~--rvk~~vL~SR~~lCi 183 (1269)
....++++|.+.|.+-..|+.+++++... .+++..+.|..
T Consensus 52 ----------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~---- 93 (556)
T 4a2p_A 52 ----------------------------------AGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGEN---- 93 (556)
T ss_dssp ----------------------------------SSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----
T ss_pred ----------------------------------CCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEECCC----
T ss_conf ----------------------------------567986999928899999999999987240694599982898----
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 10000233708999975159999992001133111998767798886467356886043566748999999811495998
Q 000814 184 NKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVF 263 (1269)
Q Consensus 184 n~~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII 263 (1269)
.. -.. .+.....++|+|
T Consensus 94 -------------------------------~~--------------~~~------------------~~~~~~~~~i~v 110 (556)
T 4a2p_A 94 -------------------------------FS--------------NVS------------------VEKVIEDSDIIV 110 (556)
T ss_dssp -------------------------------------------------C------------------HHHHHHHCSEEE
T ss_pred -------------------------------CC--------------CHH------------------HHHHHCCCCEEE
T ss_conf -------------------------------74--------------222------------------898617999999
Q ss_pred ECCCCCCCHHHHHHHCCCC-CCCEEEECCCCCHHH
Q ss_conf 0164213586553210397-863898604124799
Q 000814 264 CPYSYIINPVIRGAMEVDI-KGAILILDEAHNIED 297 (1269)
Q Consensus 264 ~nYnyLldp~iR~~l~Idl-~~~ivIfDEAHNLeD 297 (1269)
+++..|++...++... .+ .-..|||||||.+.+
T Consensus 111 ~T~~~l~~~~~~~~~~-~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 111 VTPQILVNSFEDGTLT-SLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp ECHHHHHHHHHSSSCC-CSTTCSEEEEETGGGCST
T ss_pred ECHHHHHHHHHHCCCC-CCCCCCEEEEECCCCCCC
T ss_conf 8899999999837502-503077999988753588
No 8
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=1.00 E-value=1 Score=88.14 Aligned_cols=158 Identities=18% Similarity=0.226 Sum_probs=100.7
Q ss_pred CCCCCCCCCCCCCCCEEECCEEE-------CCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHH
Q ss_conf 66899999999987301189242-------1889-999899999999999998521079610899777898446899999
Q 000814 3 SEANPNPNYRKPLNAYHVGGIQV-------EFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCS 74 (1269)
Q Consensus 3 ~~~~~~~~~~~~~~~f~i~GI~v-------~FPy-~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~s 74 (1269)
+|.+...+++.+...|.--++.- .+.| .||+.|.+.+..+ .++ .++++.+|||+|||++++.+
T Consensus 1 ~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~----~~~-----~~~lv~~pTGsGKT~~~~~~ 71 (224)
T 1qde_A 1 EESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPI----IEG-----HDVLAQAQSGTGKTGTFSIA 71 (224)
T ss_dssp ----CCBSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHH----HTT-----CCEEEECCTTSSHHHHHHHH
T ss_pred CCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----HCC-----CCEEEECCCCCCHHHHHHHH
T ss_conf 986544566763578644699999999999879999969999999999----659-----98999898989679999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHH
Q ss_conf 99999981101100012479998522357677999988888999999999603578852100111369994999645544
Q 000814 75 TLAWQQNCKLKNQLANISHSKPDTEAVTDPLANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHS 154 (1269)
Q Consensus 75 ALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~~~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHS 154 (1269)
++.+.... ...++++|.+.|..
T Consensus 72 ~l~~l~~~----------------------------------------------------------~~~~~~lil~Pt~~ 93 (224)
T 1qde_A 72 ALQRIDTS----------------------------------------------------------VKAPQALMLAPTRE 93 (224)
T ss_dssp HHHHCCTT----------------------------------------------------------CCSCCEEEECSSHH
T ss_pred HHHHHHCC----------------------------------------------------------CCCCEEEEEECCHH
T ss_conf 99998625----------------------------------------------------------79854999978799
Q ss_pred HHHHHHHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 699999999830798--667998024443341000023370899997515999999200113311199876779888646
Q 000814 155 QISQVISEYKKTAYR--VPMAVLASRKHYCTNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVH 232 (1269)
Q Consensus 155 QLsQvI~ELRkl~~r--vk~~vL~SR~~lCin~~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~ 232 (1269)
-..|+.+++++.... ++...+.|.. ... .
T Consensus 94 L~~q~~~~~~~~~~~~~~~~~~~~g~~---------------------------------~~~----------------~ 124 (224)
T 1qde_A 94 LALQIQKVVMALAFHMDIKVHACIGGT---------------------------------SFV----------------E 124 (224)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEEECC-------------------------------------------------------
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEECCC---------------------------------CHH----------------H
T ss_conf 999999999998552583499996786---------------------------------657----------------7
Q ss_pred CHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCC-CCCEEEECCCCCHHH
Q ss_conf 73568860435667489999998114959980164213586553210397-863898604124799
Q 000814 233 DIEDLVNVGQVVRGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIED 297 (1269)
Q Consensus 233 DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII~nYnyLldp~iR~~l~Idl-~~~ivIfDEAHNLeD 297 (1269)
+ ......++|+|+++..|++...+... .+ .-..+||||||.+.+
T Consensus 125 ~-------------------~~~~~~~~iiv~Tp~~l~~~~~~~~~--~~~~~~~iViDEah~~~~ 169 (224)
T 1qde_A 125 D-------------------AEGLRDAQIVVGTPGRVFDNIQRRRF--RTDKIKMFILDEADEMLS 169 (224)
T ss_dssp -----------------------CTTCSEEEECHHHHHHHHHTTSS--CCTTCCEEEEETHHHHHH
T ss_pred H-------------------HHCCCCCCEEEECHHHHHHHHHHCCC--CHHHCCEEEECCHHHHHH
T ss_conf 8-------------------85178998999898999999972881--550285999838568765
No 9
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=1.00 E-value=1 Score=87.62 Aligned_cols=135 Identities=18% Similarity=0.229 Sum_probs=87.5
Q ss_pred CCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 889-9998999999999999985210796108997778984468999999999998110110001247999852235767
Q 000814 27 FPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDPL 105 (1269)
Q Consensus 27 FPy-~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p~ 105 (1269)
+.| +|||.|.+....+. ++ .++++.+|||+|||++++.+++.+...
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~-----~~~lv~~~TGsGKT~~~~~~~~~~l~~------------------------ 85 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EG-----HDVLAQAQSGTGKTGTFSIAALQRIDT------------------------ 85 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HT-----CCEEECCCSSHHHHHHHHHHHHHHCCT------------------------
T ss_pred CCCCCCCHHHHHHHHHHH----CC-----CCEEEECCCCCHHHHHHHHHHHHHHHC------------------------
T ss_conf 599999889999999983----79-----978998899973999999999998643------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC--CCEEEECCCCCCCC
Q ss_conf 7999988888999999999603578852100111369994999645544699999999830798--66799802444334
Q 000814 106 ANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYCT 183 (1269)
Q Consensus 106 ~~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~r--vk~~vL~SR~~lCi 183 (1269)
....++++|.+.|..-..|+.+++++.... ++...+.|..
T Consensus 86 ----------------------------------~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~---- 127 (394)
T 1fuu_A 86 ----------------------------------SVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGT---- 127 (394)
T ss_dssp ----------------------------------TCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSC----
T ss_pred ----------------------------------CCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCC----
T ss_conf ----------------------------------578987899849899999999999998553781499996788----
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEEE
Q ss_conf 10000233708999975159999992001133111998767798886467356886043566748999999811495998
Q 000814 184 NKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLVF 263 (1269)
Q Consensus 184 n~~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADIII 263 (1269)
+. .........++|+|
T Consensus 128 -------------------------------------------------~~---------------~~~~~~~~~~~i~v 143 (394)
T 1fuu_A 128 -------------------------------------------------SF---------------VEDAEGLRDAQIVV 143 (394)
T ss_dssp -------------------------------------------------CH---------------HHHHHHHHHCSEEE
T ss_pred -------------------------------------------------CH---------------HHHHHHCCCCCEEE
T ss_conf -------------------------------------------------66---------------88896467999999
Q ss_pred ECCCCCCCHHHHHHHCCCCCCCEEEECCCCCHHH
Q ss_conf 0164213586553210397863898604124799
Q 000814 264 CPYSYIINPVIRGAMEVDIKGAILILDEAHNIED 297 (1269)
Q Consensus 264 ~nYnyLldp~iR~~l~Idl~~~ivIfDEAHNLeD 297 (1269)
+++..|++...+.... ...-.++||||||.+.+
T Consensus 144 ~T~~~l~~~~~~~~~~-~~~~~~vIiDEah~~~~ 176 (394)
T 1fuu_A 144 GTPGRVFDNIQRRRFR-TDKIKMFILDEADEMLS 176 (394)
T ss_dssp ECHHHHHHHHHTTSSC-CTTCCEEEEETHHHHHH
T ss_pred ECHHHHHHHHHHCCCC-HHHCCEEEEECHHHHHC
T ss_conf 7879999999818815-61375999978678657
No 10
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=1.00 E-value=1 Score=86.90 Aligned_cols=138 Identities=14% Similarity=0.178 Sum_probs=88.5
Q ss_pred CCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 1889-999899999999999998521079610899777898446899999999999811011000124799985223576
Q 000814 26 EFPY-QPYGSQLVFMCRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSTLAWQQNCKLKNQLANISHSKPDTEAVTDP 104 (1269)
Q Consensus 26 ~FPy-~pYp~Q~e~M~~V~~aL~~~~~~G~~~allESPTGTGKTLALL~sALa~~~~~k~~~~~~~v~~~k~~~~~~~~p 104 (1269)
.+.| .|++.|.+.+..+ .++ .++++.+|||+|||++++.+++......
T Consensus 60 ~~g~~~~~~~Q~~~i~~i----~~~-----~~~lv~a~TGsGKT~~~~~~il~~l~~~---------------------- 108 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLA----LQG-----RDIIGLAETGSGKTGAFALPILNALLET---------------------- 108 (249)
T ss_dssp HTTCCSCCHHHHHHHHHH----HTT-----CCEEEECCTTSCHHHHHHHHHHHHHHHS----------------------
T ss_pred HCCCCCCCHHHHHHHHHH----HCC-----CCEEEECCCCCCCHHHHHHHHHHHHHCC----------------------
T ss_conf 859998899999999999----579-----9889985899971567489999998627----------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCCC--CCEEEECCCCCCC
Q ss_conf 77999988888999999999603578852100111369994999645544699999999830798--6679980244433
Q 000814 105 LANGGGFIPESQPSTIPPSTNGQTAQVAMNNKNVKKKMTPTIFYASRTHSQISQVISEYKKTAYR--VPMAVLASRKHYC 182 (1269)
Q Consensus 105 ~~~~~~~~~e~~~St~~~t~~lq~~~~~~~~~~~~~~~~pkIiYaSRTHSQLsQvI~ELRkl~~r--vk~~vL~SR~~lC 182 (1269)
...++++|.+.|..-..|+.+++++.... ++...+.|
T Consensus 109 ------------------------------------~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g----- 147 (249)
T 3ber_A 109 ------------------------------------PQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVG----- 147 (249)
T ss_dssp ------------------------------------CCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECT-----
T ss_pred ------------------------------------CCCCEEEEEECCHHHHHHHHHHHHHHHCCCCEEEEEEEC-----
T ss_conf ------------------------------------888249999688999999999999984437766999978-----
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHCCCCEE
Q ss_conf 41000023370899997515999999200113311199876779888646735688604356674899999981149599
Q 000814 183 TNKYVRDKENIDEECKLLLGDRNLGCPQFKNVHKVRGHPSLQKGGCHEVHDIEDLVNVGQVVRGCSYYAARSMADDAQLV 262 (1269)
Q Consensus 183 in~~v~~~e~i~e~C~~L~~~~~~~C~yy~~~~k~~~~p~l~~~~~~~v~DIEDLv~~g~~~~~CPYy~sR~~~~~ADII 262 (1269)
+. +. ....+.....++|+
T Consensus 148 ------------------------------~~------------------~~--------------~~~~~~~~~~~~I~ 165 (249)
T 3ber_A 148 ------------------------------GI------------------DS--------------MSQSLALAKKPHII 165 (249)
T ss_dssp ------------------------------TS------------------CH--------------HHHHHHHHTCCSEE
T ss_pred ------------------------------CC------------------CH--------------HHHHHHHCCCCCEE
T ss_conf ------------------------------98------------------83--------------89999856899999
Q ss_pred EECCCCCCCHHHHHHHCCCC-CCCEEEECCCCCHHHH
Q ss_conf 80164213586553210397-8638986041247999
Q 000814 263 FCPYSYIINPVIRGAMEVDI-KGAILILDEAHNIEDI 298 (1269)
Q Consensus 263 I~nYnyLldp~iR~~l~Idl-~~~ivIfDEAHNLeDv 298 (1269)
|+++..|++...+.. ...+ .-.++||||||.+.+.
T Consensus 166 v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 166 IATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp EECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHT
T ss_pred EECHHHHHHHHHCCC-CCCCCCCCEEEECCHHHHHCC
T ss_conf 988899999997279-827054678998170553024
Done!