BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000815
(1269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2L5|TPPC8_HUMAN Trafficking protein particle complex subunit 8 OS=Homo sapiens
GN=TRAPPC8 PE=1 SV=2
Length = 1435
Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 246/930 (26%), Positives = 401/930 (43%), Gaps = 160/930 (17%)
Query: 260 GSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQL--KNLWWRKG 317
G+ L D I+ +QE + ++P++E+ IR LN Q+ +RKG L W G
Sbjct: 337 GACLTLTDHDRIRQFIQEFTFRGLLPHIEKTIRQLNDQL-ISRKGLSRSLFSATKKWFSG 395
Query: 318 KEETSDSPN------GPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKA 371
+ S N G +Y + E QIR + D F+++ Y+LA S Y D+ D+A
Sbjct: 396 SKVPEKSINDLKNTSGLLYPPEAPELQIRKMADLCFLVQHYDLAYSCYHTAKKDFLNDQA 455
Query: 372 WKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLK 430
AG EM ++ F+ + R + M+ A TY I A RC L E+LK
Sbjct: 456 MLYAAGALEMAAVSAFLQPGAPRPYPAHYMDTAIQTYRDI-CKNMVLAERCVLLSAELLK 514
Query: 431 ARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC 489
++ +Y +AA + R+ E+ L SA++LEQA++C++ K PM+ KY FH++L+G R+ K
Sbjct: 515 SQSKYSEAAALLIRLTSEDSDLRSALLLEQAAHCFINMKSPMVRKYAFHMILAGHRFSKA 574
Query: 490 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA---HMLEKTGKT 546
Q HA+R Y A+ VYKG WS +DH++F IG+ L D AV+ H+L K
Sbjct: 575 GQKKHALRCYCQAMQVYKGKGWSLAEDHINFTIGRQSYTLRQLDNAVSAFRHILINESKQ 634
Query: 547 ------------FEVVK-----------PRLPI--INISSLKVIFEDHRTYASAEA-ANV 580
V K P+LP+ IN S+ +V F R A E A
Sbjct: 635 SAAQQGAFLREYLYVYKNVSQLSPDGPLPQLPLPYINSSATRVFFGHDRRPADGEKQAAT 694
Query: 581 RESL-----------WRSLEEDMIPSLSTA--RSNWLELQSKLIMKKFEESN---ICVAG 624
SL WR LEE ++ ++ SN+ Q + + +++ + V
Sbjct: 695 HVSLDQEYDSESSQQWRELEEQVVSVVNKGVIPSNFHPTQ--YCLNSYSDNSRFPLAVVE 752
Query: 625 EPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGE 684
EP+ V++ F+NPL++ + ++++SL+ + + D D N+E +L+T+ E
Sbjct: 753 EPITVEVAFRNPLKVLLLLTDLSLLWKFHPK-DFSGKD---------NEEVKQLVTSEPE 802
Query: 685 MNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLS-----------GS 733
M + +SE I+ G E+ + +L + P G L I+GV + L G+
Sbjct: 803 M---IGAEVISEFLIN--GEESKVARLKLFPHHIGELHILGVVYNLGTIQGSMTVDGIGA 857
Query: 734 LVGVYNFESNL---VKKK------------IAKGRRKVKSSPSNDLKFIVIKSLPKLEGL 778
L G + + +L V+ K + + VK P L I+ + +P LE
Sbjct: 858 LPGCHTGKYSLSMSVRGKQDLEIQGPRLNNTKEEKTSVKYGPDRRLDPIITEEMPLLEVF 917
Query: 779 IHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGN--------------- 823
P G++R +E N S + LK+ P F + G
Sbjct: 918 FIHFPTGLLCGEIRKAYVEFVNVSKCPLTGLKVVSKRPEFFTFGGNTAVLTPLSPSASEN 977
Query: 824 ----RDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAV-FSFPEGISIQGETPLLWPLWY 878
+ +T C +++A G P+ + P+ + + G + L P+W
Sbjct: 978 CSAYKTVVTDATSVCTALISSASSVDFGIGTGSQPEVIPVPLPDTVLLPGASVQL-PMWL 1036
Query: 879 RAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSS------ 931
R G ++ YYE I++R+LR + SLNV + +S
Sbjct: 1037 RGPDEEGVHEINFLFYYESVKKQPKIRHRILRHTAIICTSRSLNVRATVCRSNSLENEEG 1096
Query: 932 RLQQYLVRMDVVNQTSSE----NFQIHQLSSVGHQWE----ISLLQPFDSIFPS--ESLF 981
R LV +DV N +SE F I Q+SS W+ ++L + D+ S + F
Sbjct: 1097 RGGNMLVFVDVENTNTSEAGVKEFHIVQVSSSSKHWKLQKSVNLSENKDTKLASREKGKF 1156
Query: 982 AGQALSCFFMLKNRGESST-SSDDTSSPSRLLGSD---VSLQGTADTLFDISGSPLADFH 1037
+A+ C + E++T SS+ + + G++ S AD + S L
Sbjct: 1157 CFKAIRC-----EKEEAATQSSEKYTFADIIFGNEQIISSASPCADFFYRSLSSELKKPQ 1211
Query: 1038 AH-------------ERLLQRVSQDDTNTV 1054
AH RL+Q+ S+ D N V
Sbjct: 1212 AHLPVHTEKQSTEDAVRLIQKCSEVDLNIV 1241
Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 119/253 (47%), Gaps = 28/253 (11%)
Query: 11 KMLLDEITPVVMVLRTPLVEESCGKNGISLLQMLSPFCNFSNIDVPVRTASDQPYRLHKF 70
+++ D P V L + E N +S ++L PF ++ +V +R ++Q LH
Sbjct: 10 ELIPDSFVPCVAALCSDEAERLTRLNHLSFAELLKPFSRLTS-EVHMRDPNNQ---LHVI 65
Query: 71 KLRLVYESDI--RHPNLEVAKEQLKQVITRTGEKELSELGSDPTE--ISDVVGRSESEIL 126
K + S+I + P ++ L V++ GS P E +++V+ + ++
Sbjct: 66 KNLKIAVSNIVTQPPQPGAIRKLLNDVVS----------GSQPAEGLVANVITAGDYDLN 115
Query: 127 PS----WFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSL 182
S WF+ + + + ++ +HE +H +AC+LV SS + +P+ +F L
Sbjct: 116 ISATTPWFESYRETFLQSMPALDHEFLNHYLACMLVASSSEAEPVEQFSKLSQEQHRIQH 175
Query: 183 LNDGAMD----PKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGR 238
+D + P LK+Y+L+HD G ++A I EM+ +G C LL INS R
Sbjct: 176 NSDYSYPKWFIPNTLKYYVLLHDVSAGDEQRAESIYEEMKQKYGTQGCYLLKINSRTSNR 235
Query: 239 I--ERQDNPWASH 249
E+ +PW+ +
Sbjct: 236 ASDEQIPDPWSQY 248
>sp|O74748|TR852_SCHPO Transport protein particle subunit trs85-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs85-2 PE=3 SV=1
Length = 618
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 103/428 (24%), Positives = 168/428 (39%), Gaps = 48/428 (11%)
Query: 132 LFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPK 191
++ ++L+ + + E F HPVA L+VV+S + P L N+ +P L +
Sbjct: 179 VYVRQLLTGIPITPFETFSHPVAHLVVVTSHNPSPFESLRSLINS--IPYLSLPAFVFND 236
Query: 192 ILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIERQDNPWASHKS 251
I ++ VHD E + I M+ TFG DC S+ ++ + S
Sbjct: 237 INYLFVYVHDEDQHDLELSMAIFDTMKQTFG--DCGYFLRLHSQKATLDYEHTVPFPTSS 294
Query: 252 DASPSKHLGSFLNND---------DFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATR 302
S + L N D D ++ + +A I+ Y+++ +R + Q ++ R
Sbjct: 295 WLSAEERLHLLSNTDTEIRLLFESDNESLRRLSSHIAFNGIVSYLDKCVRAWDDQYASPR 354
Query: 303 KGFRNQL-----KNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALS 357
+G +L K L ++ P+ Y S E+ +R L DY+FMLRDY A
Sbjct: 355 RGITGKLLFASRKYLSSSNASTNSNYFPSSNAYRPFSPEAYLRKLADYSFMLRDYSHANQ 414
Query: 358 NYRLISTDYKLDKAWKRYAGVQEMMGLT---------YFMLDQSRKEAEYCMENAFTTYA 408
Y + S Y+ D A A EM+ +T Y L + + EY M++A Y
Sbjct: 415 IYEIASRQYENDGACLYSAASLEMIVITEHILHLKMPYMSLTNTLRINEY-MQSAMLNYL 473
Query: 409 KIGSSGQQNATRCGLWWVEMLKARHQYK-------DAATVYFRICGEEPLHSAVMLEQA- 460
+ +A RC L + L K +A +Y + G P+ A++ +Q
Sbjct: 474 NKSFNSYYHAARCFLLLGQFLSCLPAPKVDDAANWNAGLLYSKRLG--PVGRAMIFQQTH 531
Query: 461 ------SYCYLLSKPPM----LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST 510
SY S P K VL+ D + +C A A Y
Sbjct: 532 TLFKSLSYLKTESTDPFSNKRTRKAALWCVLTADAWLRCRIPFRAKPFVEEAKLFYGKID 591
Query: 511 WSHIKDHV 518
W +K+ V
Sbjct: 592 WKDLKECV 599
>sp|O94731|TR851_SCHPO Transport protein particle subunit trs85-1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs85-1 PE=3 SV=1
Length = 658
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 123/307 (40%), Gaps = 63/307 (20%)
Query: 144 SEHEAFDHPVACLLVVSSEDEQPINRFIDLF---NTNKLPSLLNDGAMDPKILKHYLLVH 200
+EHE F HPV CL+V++S + P+ + LF N P+ ++ +IL +YL +H
Sbjct: 195 AEHETFSHPVGCLIVITSHNTNPMATVMRLFKEINNAPFPNFISK-----EILHYYLFIH 249
Query: 201 DNQDGPSEKASKILTEMRSTFGPN-----------DCQLLCINSSEDGRIERQDNP---- 245
D + + +I +MR + G N + L + + I+ N
Sbjct: 250 DEDNNDLSNSKQIFQQMRRSLGANSHFIRLRSNYISAKPLDTDRYDTSSIQSLKNAPRDS 309
Query: 246 -----WASHKSDASP----SKHLGSF-------------------------LNNDDFSEI 271
+ S DA P +K+L F L ++ +
Sbjct: 310 MESESFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLYPLLPVEEVEGM 369
Query: 272 KDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQL----KNLWWRKGKEETSDS--P 325
K +Q + I P+M++ +R + ++ +L K W R + + P
Sbjct: 370 KKFVQTMLYDSIYPFMQRCVRAWEEDLTPQYGNLTTRLLFASKKYWSRNHSSHSQGNYDP 429
Query: 326 NGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLT 385
+Y+ ES R + D++FMLRDY+ A Y I + DKAW A +E+ +
Sbjct: 430 LSLIYSSEKQESIKRKMADFSFMLRDYKRAYEIYDEIRNTFSQDKAWNYLASCEEIQIIC 489
Query: 386 YFMLDQS 392
M +++
Sbjct: 490 LLMQNRN 496
>sp|P46944|TRS85_YEAST Trafficking protein particle complex III-specific subunit 85
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=TRS85 PE=1 SV=2
Length = 698
Score = 47.0 bits (110), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 87/407 (21%), Positives = 150/407 (36%), Gaps = 69/407 (16%)
Query: 129 WFQLFNKELMHTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLF--------NTNKLP 180
+ F+ + T + S +E F+HP+ L+ + + + DL NT P
Sbjct: 187 YHSFFSLAISSTNNLSPYETFNHPILSLIALDISNGEVYEDARDLLVNFKNLNHNTENFP 246
Query: 181 SLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRSTFGPNDCQLLCINSSEDGRIE 240
+N M P L L +D+ EK + +++ + + + +D I
Sbjct: 247 IFMNTNEMLPVFL---LCYNDDSQEEFEKCQALAKKLKKQLF---VESILLALWKDSFIY 300
Query: 241 RQDNPWASHKSDASPSKHLGSFLNNDD--------FSEIKDVMQELASKHIIPYMEQKIR 292
+++ H+ S + + FL + I D++ L +IP+M++K+
Sbjct: 301 DENSVIQLHQPVMSSLEEILFFLQAPTQTTLSLALINSIYDMLDYLVYDLMIPFMKRKVS 360
Query: 293 VLNQQVSATRKGFRNQLKNLWWRK--------GKEE----TSDSPNGPMYTFSSIESQIR 340
+ + RK N K +++K G + T DS + SS E +R
Sbjct: 361 FWEETILQPRKSLFNGAK--FFKKFMNKNPVNGNHQHNSLTRDSQGNEYFASSSSEFLMR 418
Query: 341 ILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS-------R 393
L D++ ML D++ A S Y + D LD K A E ++ M QS +
Sbjct: 419 KLADWSMMLSDFKTAYSTYESLMDD--LDAFPKYLASCIEWCAVSLLMGAQSIVTVKMIK 476
Query: 394 KEAEYCMENAFTTYAKI-----GSSGQQNA-----------TRCGLWWVEM---LKARHQ 434
+ +E A TY G + N+ TRC + E+ L
Sbjct: 477 NDINPLIERALATYENCSRIQRGKGKESNSLDVTEPVRSYETRCMILASELFLSLSNTWT 536
Query: 435 YKDAATVYFRI----CGEEPLHSAVMLEQASYCYLLSKPPML-HKYG 476
A Y C P ++ E+ S CY L P + H+ G
Sbjct: 537 STPYAIQYLETILDECKLGPCSQIMVWERLSDCYNLRVDPRIKHRVG 583
>sp|Q69RJ0|GLTB_ORYSJ Ferredoxin-dependent glutamate synthase, chloroplastic OS=Oryza
sativa subsp. japonica GN=GLU PE=2 SV=2
Length = 1615
Score = 41.6 bits (96), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%)
Query: 156 LLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILT 215
+L V E+ + + N +L SLLND + PK+L Y + DG +KA K+L
Sbjct: 628 ILEVGPENADQVTLSSPVLNEGELESLLNDSKLKPKVLSTYFDIRKGLDGSLDKAIKVLC 687
Query: 216 EMRSTFGPNDCQLLCIN 232
+ N QLL ++
Sbjct: 688 DEADAAVRNGSQLLVLS 704
>sp|Q8K482|EMIL2_MOUSE EMILIN-2 OS=Mus musculus GN=Emilin2 PE=1 SV=1
Length = 1074
Score = 38.5 bits (88), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 69/159 (43%), Gaps = 27/159 (16%)
Query: 237 GRIERQDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELAS-KHIIPYMEQKIRVLN 295
G + Q P + DA PS+ G + + S +KD+ ELA K + K+ L+
Sbjct: 232 GPLHPQPTPDSPLAGDAEPSQLPG--IPSSKESGMKDIKSELAEVKDTLKTKSDKLEELD 289
Query: 296 QQVSATRKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSS-------IESQIRILGDYAFM 348
+V KG+ QLK L ++ GP T ++ ++S+I L +
Sbjct: 290 GKV----KGYEGQLKQL---------QEAAQGPTVTMTTNELYQAYVDSKIDALREELME 336
Query: 349 LRDYELA-LSN---YRLISTDYKLDKAWKRYAGVQEMMG 383
D +LA L N Y+L+ + D Y GV E++G
Sbjct: 337 GMDRKLADLKNTCEYKLVGLQQQCDDYGSSYLGVIELIG 375
>sp|Q25132|LHX3_HALRO LIM/homeobox protein Lhx3 OS=Halocynthia roretzi GN=LHX3 PE=2 SV=2
Length = 692
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 7/124 (5%)
Query: 1060 SQPSKSDSDSGISDPQHLFSHHACHCSIL---GKTPITWLVDGPRTLHHNFNASFCEVNL 1116
S P S + +SD HLFS ++ H S + GK+ ++L PR ++ N N
Sbjct: 159 SSPENMTSFNPMSDSSHLFSDYSKHNSTILANGKSGTSYLTSTPRRIYDNTNMINIPEET 218
Query: 1117 KM--TIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVT 1174
K T YN ++ + FD+P SSG TSP + + + D K+
Sbjct: 219 KNIPTCYNGNNHVPSESI--FDNPLSSGANRRMTSPGHKIQPSTCSDMLFTLLAKDNKIE 276
Query: 1175 SQLP 1178
+++P
Sbjct: 277 AEIP 280
>sp|P23225|GLTB_MAIZE Ferredoxin-dependent glutamate synthase, chloroplastic OS=Zea mays
GN=GLSF PE=1 SV=1
Length = 1616
Score = 34.7 bits (78), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 156 LLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILT 215
+L V E+ + + N +L +LLND + PK+L Y + DG +K + L
Sbjct: 629 ILEVGPENADQVALSSPVLNEGELETLLNDSKLKPKVLSTYFDIRKGLDGSLDKTIQALC 688
Query: 216 EMRSTFGPNDCQLLCIN 232
E + QLL ++
Sbjct: 689 EEADAAVRSGSQLLVLS 705
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3
PE=1 SV=1
Length = 1050
Score = 34.7 bits (78), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 552 PRLPIINISSLKVIFEDHRTYASAEAANVRESLWRSLEEDMIPSLSTARSNWLELQSKLI 611
P++P I+++S +V+FE +++ + + E + S E +IP LS++ + ++ LI
Sbjct: 453 PKIPGIDLNSTRVLFEK---LMNSQHSMILEQILNSFESCLIPQLSSSPPDVEAMRIYLI 509
Query: 612 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISL 648
+ +F P+ D ++ L IP++++ + L
Sbjct: 510 LPEF----------PLLQDSKYYITLTIPLAMAILRL 536
>sp|O96006|ZBED1_HUMAN Zinc finger BED domain-containing protein 1 OS=Homo sapiens
GN=ZBED1 PE=1 SV=1
Length = 694
Score = 34.3 bits (77), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 9/120 (7%)
Query: 376 AGVQEMMGLTYF--MLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGL------WWVE 427
AG+Q+ L +L + RK EY ++A Y QQN C L WW
Sbjct: 297 AGIQQAFQLPKLGALLSRCRKLVEYFQQSAVAMYMLYEKQKQQNVAHCMLVSNRVSWWGS 356
Query: 428 MLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYG-FHLVLSGDRY 486
L + K+ V + E+ + +MLE + + + +L + +LS RY
Sbjct: 357 TLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGLVELLQPFKQVAEMLSASRY 416
>sp|P40069|IMB4_YEAST Importin subunit beta-4 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=KAP123 PE=1 SV=1
Length = 1113
Score = 34.3 bits (77), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 275 MQELA---SKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGK 318
+ ELA +H +PY+EQ ++VLN+QV + G R N W K
Sbjct: 673 LSELALGTKEHFLPYVEQSLKVLNEQVDESY-GLRETALNTIWNVVK 718
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,371,819
Number of Sequences: 539616
Number of extensions: 19533709
Number of successful extensions: 47481
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 47417
Number of HSP's gapped (non-prelim): 64
length of query: 1269
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1140
effective length of database: 121,958,995
effective search space: 139033254300
effective search space used: 139033254300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)