Query 000815
Match_columns 1269
No_of_seqs 220 out of 311
Neff 6.6
Searched_HMMs 46136
Date Tue Apr 2 00:02:17 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1938 Protein with predicted 100.0 9E-106 2E-110 968.9 22.2 910 141-1220 1-960 (960)
2 PF12739 TRAPPC-Trs85: ER-Golg 100.0 1.4E-79 3E-84 731.2 33.9 361 160-520 1-414 (414)
3 PF08626 TRAPPC9-Trs120: Trans 100.0 5.3E-30 1.1E-34 339.6 75.2 747 329-1220 235-1185(1185)
4 KOG1953 Targeting complex (TRA 99.9 1.4E-19 3.1E-24 218.9 29.8 412 511-997 557-1034(1235)
5 KOG1938 Protein with predicted 99.7 2.4E-19 5.1E-24 219.8 -1.7 499 8-518 151-772 (960)
6 PF07919 Gryzun: Gryzun, putat 99.4 5.5E-09 1.2E-13 130.6 47.9 496 615-1233 17-552 (554)
7 PF06159 DUF974: Protein of un 98.0 0.00064 1.4E-08 76.6 21.9 182 785-997 9-210 (249)
8 PF14938 SNAP: Soluble NSF att 97.8 0.00058 1.3E-08 78.4 16.3 151 350-541 29-180 (282)
9 COG1470 Predicted membrane pro 97.1 0.035 7.5E-07 66.0 20.1 177 619-890 278-465 (513)
10 KOG1840 Kinesin light chain [C 96.4 0.2 4.3E-06 61.9 20.2 191 334-541 197-392 (508)
11 PF14938 SNAP: Soluble NSF att 96.4 0.095 2.1E-06 60.3 16.6 182 336-540 35-220 (282)
12 KOG1586 Protein required for f 96.0 0.11 2.4E-06 57.1 13.6 92 351-446 29-120 (288)
13 PF11817 Foie-gras_1: Foie gra 95.9 0.027 5.9E-07 63.6 9.1 88 452-541 156-243 (247)
14 PRK11447 cellulose synthase su 95.8 0.25 5.3E-06 67.9 19.2 190 334-541 302-520 (1157)
15 KOG1840 Kinesin light chain [C 95.8 0.9 2E-05 56.4 21.8 199 339-540 244-474 (508)
16 KOG1585 Protein required for f 95.5 0.15 3.2E-06 56.5 12.0 131 349-541 44-175 (308)
17 PF13429 TPR_15: Tetratricopep 95.4 0.034 7.3E-07 63.5 7.4 167 337-541 45-239 (280)
18 TIGR02917 PEP_TPR_lipo putativ 95.1 1.1 2.4E-05 58.4 20.8 182 333-539 54-250 (899)
19 PRK11788 tetratricopeptide rep 95.0 1.1 2.4E-05 53.3 18.9 192 333-541 67-274 (389)
20 TIGR03302 OM_YfiO outer membra 94.8 3 6.5E-05 46.0 20.7 188 338-541 35-228 (235)
21 TIGR00990 3a0801s09 mitochondr 94.7 0.94 2E-05 58.0 18.5 58 478-541 510-567 (615)
22 TIGR02521 type_IV_pilW type IV 94.7 2.5 5.4E-05 45.0 19.1 180 338-538 33-225 (234)
23 TIGR02917 PEP_TPR_lipo putativ 94.6 0.87 1.9E-05 59.3 18.2 51 483-539 844-894 (899)
24 PRK11788 tetratricopeptide rep 94.6 1.4 3.1E-05 52.3 18.6 164 338-541 143-307 (389)
25 PF10633 NPCBM_assoc: NPCBM-as 94.1 0.16 3.4E-06 46.9 7.0 74 787-895 2-78 (78)
26 PF00927 Transglut_C: Transglu 94.0 0.36 7.9E-06 47.2 9.8 75 620-723 10-84 (107)
27 PF07705 CARDB: CARDB; InterP 94.0 0.29 6.3E-06 46.5 9.0 85 773-895 2-86 (101)
28 PRK15174 Vi polysaccharide exp 93.5 2.8 6.2E-05 54.1 19.3 53 483-541 291-343 (656)
29 TIGR00990 3a0801s09 mitochondr 93.4 2 4.3E-05 55.1 17.4 174 349-541 307-492 (615)
30 KOG2625 Uncharacterized conser 93.2 0.24 5.2E-06 53.4 7.2 314 785-1237 10-332 (348)
31 PF14874 PapD-like: Flagellar- 93.0 0.76 1.6E-05 44.3 10.0 86 773-896 2-90 (102)
32 PRK11447 cellulose synthase su 92.8 5.8 0.00013 54.8 21.8 184 338-541 114-328 (1157)
33 KOG1941 Acetylcholine receptor 92.8 6.5 0.00014 46.1 18.2 188 334-541 159-356 (518)
34 KOG1586 Protein required for f 91.7 0.86 1.9E-05 50.4 9.2 106 433-541 28-139 (288)
35 cd05804 StaR_like StaR_like; a 91.2 6 0.00013 46.4 16.8 170 334-542 42-212 (355)
36 KOG2076 RNA polymerase III tra 90.9 5.3 0.00011 51.6 16.2 166 334-541 136-305 (895)
37 PRK09782 bacteriophage N4 rece 90.9 6.8 0.00015 52.9 18.4 103 431-541 588-702 (987)
38 PRK15174 Vi polysaccharide exp 90.9 8 0.00017 50.1 18.7 159 340-541 216-377 (656)
39 KOG1155 Anaphase-promoting com 90.8 4.2 9.1E-05 49.1 14.3 161 338-541 264-457 (559)
40 PRK04841 transcriptional regul 90.2 17 0.00038 48.5 21.7 181 341-541 457-637 (903)
41 KOG1126 DNA-binding cell divis 90.2 6.6 0.00014 49.3 15.9 197 337-541 354-616 (638)
42 PF13525 YfiO: Outer membrane 89.7 34 0.00074 37.4 19.8 185 334-535 3-197 (203)
43 PF13424 TPR_12: Tetratricopep 88.9 0.9 2E-05 41.2 5.7 62 480-541 9-71 (78)
44 PRK10049 pgaA outer membrane p 88.4 13 0.00028 49.1 18.1 181 335-541 237-418 (765)
45 PF12895 Apc3: Anaphase-promot 87.6 1.7 3.6E-05 40.2 6.8 51 484-541 33-83 (84)
46 PRK12370 invasion protein regu 87.5 14 0.00031 46.8 17.1 176 350-541 275-466 (553)
47 KOG1173 Anaphase-promoting com 87.1 11 0.00023 46.7 14.5 65 473-543 452-516 (611)
48 PRK04841 transcriptional regul 86.9 31 0.00066 46.2 20.7 145 395-542 591-757 (903)
49 cd05804 StaR_like StaR_like; a 86.2 63 0.0014 37.8 20.7 191 338-541 116-332 (355)
50 PF13432 TPR_16: Tetratricopep 86.2 1.9 4.1E-05 37.6 5.9 55 481-541 2-56 (65)
51 PRK10747 putative protoheme IX 85.4 23 0.0005 42.9 16.7 112 420-542 264-387 (398)
52 PRK10370 formate-dependent nit 85.3 24 0.00051 38.6 15.2 90 424-541 78-169 (198)
53 PRK10049 pgaA outer membrane p 84.1 42 0.00091 44.4 19.5 56 486-541 320-384 (765)
54 PF09976 TPR_21: Tetratricopep 83.1 26 0.00057 35.9 13.7 96 416-540 45-142 (145)
55 TIGR00540 hemY_coli hemY prote 82.7 64 0.0014 39.2 19.0 191 335-540 117-359 (409)
56 PRK15179 Vi polysaccharide bio 82.1 13 0.00029 48.2 13.4 116 419-541 86-213 (694)
57 KOG2002 TPR-containing nuclear 81.8 27 0.0006 45.8 15.4 64 479-546 274-337 (1018)
58 PF09986 DUF2225: Uncharacteri 81.7 12 0.00026 41.5 11.2 99 350-460 98-207 (214)
59 TIGR02795 tol_pal_ybgF tol-pal 81.7 21 0.00046 34.1 11.8 93 426-541 9-101 (119)
60 PF13414 TPR_11: TPR repeat; P 81.2 3.4 7.5E-05 36.3 5.5 57 479-541 6-63 (69)
61 KOG1125 TPR repeat-containing 80.9 14 0.00029 46.0 11.9 193 341-543 290-525 (579)
62 TIGR03302 OM_YfiO outer membra 80.7 36 0.00079 37.4 14.7 48 338-388 72-119 (235)
63 KOG2002 TPR-containing nuclear 80.5 24 0.00053 46.3 14.4 194 337-545 271-481 (1018)
64 KOG1130 Predicted G-alpha GTPa 80.4 22 0.00048 42.5 12.8 59 483-541 242-300 (639)
65 PRK11189 lipoprotein NlpI; Pro 78.4 82 0.0018 36.5 17.2 25 517-541 237-261 (296)
66 cd00189 TPR Tetratricopeptide 78.2 19 0.00041 31.3 9.6 87 426-541 7-93 (100)
67 TIGR02521 type_IV_pilW type IV 78.0 56 0.0012 34.5 14.8 115 420-541 66-194 (234)
68 PRK15359 type III secretion sy 77.6 14 0.0003 38.1 9.5 87 426-541 31-117 (144)
69 PRK11189 lipoprotein NlpI; Pro 77.5 29 0.00064 40.2 13.2 154 333-506 96-266 (296)
70 PF05753 TRAP_beta: Translocon 77.2 19 0.00042 38.9 10.6 93 772-897 20-115 (181)
71 CHL00033 ycf3 photosystem I as 76.9 23 0.00049 37.2 11.1 95 423-539 39-136 (168)
72 TIGR00540 hemY_coli hemY prote 76.6 1E+02 0.0023 37.4 18.2 192 333-541 185-395 (409)
73 KOG2041 WD40 repeat protein [G 76.2 64 0.0014 41.1 15.5 32 510-541 1015-1046(1189)
74 KOG2003 TPR repeat-containing 76.0 17 0.00037 43.6 10.3 186 329-536 413-612 (840)
75 KOG4626 O-linked N-acetylgluco 75.9 51 0.0011 41.6 14.5 58 479-542 357-414 (966)
76 PF13424 TPR_12: Tetratricopep 75.7 12 0.00026 33.7 7.5 69 338-407 7-76 (78)
77 KOG1173 Anaphase-promoting com 75.5 16 0.00035 45.3 10.4 182 337-543 245-441 (611)
78 PLN03088 SGT1, suppressor of 75.4 21 0.00045 42.7 11.4 85 428-541 11-95 (356)
79 TIGR02795 tol_pal_ybgF tol-pal 74.5 30 0.00065 33.0 10.5 102 338-448 4-105 (119)
80 PF13429 TPR_15: Tetratricopep 74.2 16 0.00035 41.6 9.8 176 336-538 78-270 (280)
81 PRK02603 photosystem I assembl 73.9 14 0.00029 39.1 8.5 67 472-542 32-98 (172)
82 PF13414 TPR_11: TPR repeat; P 72.4 13 0.00027 32.7 6.6 61 338-404 5-65 (69)
83 PRK15179 Vi polysaccharide bio 71.4 63 0.0014 42.2 15.1 135 336-508 86-220 (694)
84 PF01345 DUF11: Domain of unkn 71.3 16 0.00034 33.3 7.1 52 769-820 20-71 (76)
85 KOG4626 O-linked N-acetylgluco 71.1 7.6 0.00016 48.3 6.2 164 341-506 121-316 (966)
86 PF10300 DUF3808: Protein of u 70.9 78 0.0017 39.4 15.3 68 472-541 263-330 (468)
87 PRK09782 bacteriophage N4 rece 70.7 97 0.0021 42.2 17.1 56 480-541 613-668 (987)
88 PF12569 NARP1: NMDA receptor- 70.7 1.1E+02 0.0024 38.6 16.5 189 335-541 37-253 (517)
89 PRK10866 outer membrane biogen 70.7 1.9E+02 0.0041 32.7 18.8 185 336-537 32-233 (243)
90 PRK10747 putative protoheme IX 70.5 1.8E+02 0.0039 35.3 18.1 190 334-541 116-353 (398)
91 PF09295 ChAPs: ChAPs (Chs5p-A 70.2 58 0.0013 39.6 13.5 85 425-538 206-290 (395)
92 TIGR02552 LcrH_SycD type III s 69.8 39 0.00085 33.5 10.4 91 422-541 20-110 (135)
93 PF14559 TPR_19: Tetratricopep 69.8 9.5 0.00021 33.2 5.2 49 487-541 2-50 (68)
94 PF10602 RPN7: 26S proteasome 69.3 38 0.00083 36.4 10.6 106 333-446 33-140 (177)
95 PF09986 DUF2225: Uncharacteri 69.3 21 0.00046 39.6 8.9 68 474-541 116-190 (214)
96 COG2956 Predicted N-acetylgluc 68.9 2.4E+02 0.0053 33.4 17.1 166 336-541 141-307 (389)
97 PF10633 NPCBM_assoc: NPCBM-as 68.8 28 0.0006 32.0 8.2 67 622-724 2-72 (78)
98 PF00635 Motile_Sperm: MSP (Ma 68.6 15 0.00033 35.5 6.8 54 789-881 17-70 (109)
99 PF11817 Foie-gras_1: Foie gra 68.5 12 0.00026 42.4 6.9 67 334-400 176-242 (247)
100 KOG2003 TPR repeat-containing 68.2 54 0.0012 39.6 12.1 50 477-532 661-710 (840)
101 smart00809 Alpha_adaptinC2 Ada 67.9 44 0.00094 32.2 9.8 74 789-897 17-90 (104)
102 PF07705 CARDB: CARDB; InterP 67.4 61 0.0013 30.4 10.7 68 619-725 13-81 (101)
103 PF12895 Apc3: Anaphase-promot 66.8 43 0.00092 30.8 9.2 82 349-444 2-83 (84)
104 PRK14574 hmsH outer membrane p 66.8 2.5E+02 0.0055 37.6 19.4 181 338-541 36-228 (822)
105 PF12688 TPR_5: Tetratrico pep 66.6 80 0.0017 31.9 11.6 98 421-541 3-100 (120)
106 PF13371 TPR_9: Tetratricopept 64.6 20 0.00043 31.7 6.3 52 484-541 3-54 (73)
107 PRK12370 invasion protein regu 64.1 1.8E+02 0.0039 36.9 17.0 178 340-541 299-501 (553)
108 KOG3617 WD40 and TPR repeat-co 61.4 1E+02 0.0022 40.2 13.2 25 340-364 804-828 (1416)
109 PRK10370 formate-dependent nit 60.8 93 0.002 34.0 11.8 114 333-462 71-189 (198)
110 PLN03088 SGT1, suppressor of 59.9 57 0.0012 39.0 10.8 97 338-449 4-100 (356)
111 KOG3616 Selective LIM binding 59.7 1.6E+02 0.0035 37.8 14.3 61 481-541 666-731 (1636)
112 PF09976 TPR_21: Tetratricopep 59.5 77 0.0017 32.4 10.4 90 342-444 54-143 (145)
113 PRK10803 tol-pal system protei 59.1 2E+02 0.0042 33.1 14.5 104 336-448 143-246 (263)
114 cd00189 TPR Tetratricopeptide 58.8 26 0.00057 30.4 6.1 55 481-541 5-59 (100)
115 KOG0547 Translocase of outer m 58.4 1.6E+02 0.0035 36.5 13.7 155 343-541 401-562 (606)
116 PRK15359 type III secretion sy 58.3 57 0.0012 33.5 9.2 93 339-447 27-120 (144)
117 PLN03218 maturation of RBCL 1; 57.7 4.2E+02 0.0091 36.7 19.4 24 340-363 476-499 (1060)
118 PF13174 TPR_6: Tetratricopept 57.5 11 0.00025 27.7 2.9 28 340-367 4-31 (33)
119 PF13584 BatD: Oxygen toleranc 56.8 3.8E+02 0.0083 33.3 17.8 99 700-805 188-303 (484)
120 PF13176 TPR_7: Tetratricopept 56.4 14 0.00031 28.6 3.3 22 340-361 3-24 (36)
121 PLN03077 Protein ECB2; Provisi 56.4 3.7E+02 0.0079 36.1 18.7 63 473-541 588-650 (857)
122 KOG2076 RNA polymerase III tra 56.4 93 0.002 40.9 12.1 59 476-541 208-266 (895)
123 PF14646 MYCBPAP: MYCBP-associ 55.5 71 0.0015 39.3 10.8 91 774-896 236-327 (426)
124 PRK10803 tol-pal system protei 55.0 1.1E+02 0.0024 35.2 11.6 87 399-510 165-251 (263)
125 CHL00033 ycf3 photosystem I as 53.5 56 0.0012 34.2 8.4 61 479-542 38-98 (168)
126 PF07719 TPR_2: Tetratricopept 53.4 22 0.00048 26.3 3.9 27 339-365 4-30 (34)
127 PLN03077 Protein ECB2; Provisi 53.1 3.6E+02 0.0078 36.2 17.8 48 484-541 532-579 (857)
128 PLN03218 maturation of RBCL 1; 52.6 2.9E+02 0.0062 38.2 16.6 56 481-541 689-744 (1060)
129 PF13584 BatD: Oxygen toleranc 52.3 1.7E+02 0.0037 36.4 13.7 86 705-803 71-156 (484)
130 PF00927 Transglut_C: Transglu 52.1 27 0.00059 34.0 5.3 74 783-886 8-82 (107)
131 KOG3060 Uncharacterized conser 52.0 4E+02 0.0087 30.7 14.7 155 334-507 50-222 (289)
132 PF03896 TRAP_alpha: Transloco 52.0 2.1E+02 0.0045 33.4 13.1 86 783-899 92-182 (285)
133 PF14796 AP3B1_C: Clathrin-ada 50.9 69 0.0015 33.5 8.2 37 777-814 73-109 (145)
134 PF13181 TPR_8: Tetratricopept 50.9 21 0.00045 26.7 3.4 26 339-364 4-29 (34)
135 PF00515 TPR_1: Tetratricopept 50.7 20 0.00044 26.9 3.3 25 340-364 5-29 (34)
136 KOG2300 Uncharacterized conser 50.0 4.9E+02 0.011 32.5 15.9 153 378-536 325-505 (629)
137 PRK02603 photosystem I assembl 49.8 1.2E+02 0.0025 32.0 10.2 85 421-531 37-121 (172)
138 TIGR01451 B_ant_repeat conserv 48.8 37 0.00081 29.1 5.0 38 784-821 6-43 (53)
139 PF12584 TRAPPC10: Trafficking 47.6 76 0.0016 33.0 8.1 35 698-732 80-114 (147)
140 PLN03081 pentatricopeptide (PP 47.5 2.9E+02 0.0064 36.0 15.3 51 482-541 366-416 (697)
141 KOG1174 Anaphase-promoting com 46.8 6.4E+02 0.014 31.0 17.2 57 479-542 441-497 (564)
142 PF09478 CBM49: Carbohydrate b 46.6 54 0.0012 30.5 6.1 25 790-814 17-41 (80)
143 PF07719 TPR_2: Tetratricopept 46.4 38 0.00082 25.0 4.2 27 481-507 6-32 (34)
144 PF12735 Trs65: TRAPP traffick 46.0 2.1E+02 0.0047 33.6 12.3 128 1091-1234 156-288 (306)
145 KOG1129 TPR repeat-containing 45.9 3E+02 0.0065 32.6 12.8 192 265-541 192-383 (478)
146 PF13428 TPR_14: Tetratricopep 45.9 23 0.00049 28.7 3.1 38 339-376 4-42 (44)
147 PF14874 PapD-like: Flagellar- 44.7 95 0.0021 29.7 7.8 68 618-722 13-81 (102)
148 PLN03081 pentatricopeptide (PP 44.3 4E+02 0.0086 34.8 15.8 55 482-541 331-385 (697)
149 PRK14720 transcript cleavage f 43.4 4.6E+02 0.0099 35.5 15.8 201 328-539 24-246 (906)
150 KOG1155 Anaphase-promoting com 42.8 55 0.0012 40.0 6.7 56 480-541 436-491 (559)
151 PRK15363 pathogenicity island 42.4 1.1E+02 0.0024 32.4 8.3 88 338-441 37-125 (157)
152 TIGR02552 LcrH_SycD type III s 42.3 85 0.0018 31.0 7.3 60 476-541 17-76 (135)
153 PF06030 DUF916: Bacterial pro 41.8 2.8E+02 0.0061 28.0 10.8 84 621-718 23-106 (121)
154 COG1361 S-layer domain [Cell e 41.5 8.1E+02 0.017 30.7 25.1 133 780-947 157-295 (500)
155 KOG1156 N-terminal acetyltrans 41.3 6.1E+02 0.013 32.7 15.4 183 337-541 220-430 (700)
156 PLN03098 LPA1 LOW PSII ACCUMUL 40.6 70 0.0015 39.3 7.3 58 482-543 81-139 (453)
157 PF12690 BsuPI: Intracellular 39.9 2E+02 0.0043 27.1 8.7 73 627-724 2-81 (82)
158 KOG0550 Molecular chaperone (D 39.4 1.8E+02 0.0038 35.5 10.0 186 345-536 92-307 (486)
159 PF13525 YfiO: Outer membrane 39.1 3.3E+02 0.0071 29.7 11.8 54 333-390 40-93 (203)
160 PF12742 Gryzun-like: Gryzun, 38.7 59 0.0013 28.5 4.5 41 1191-1231 15-55 (57)
161 KOG3060 Uncharacterized conser 38.4 6.8E+02 0.015 28.9 15.6 153 368-541 48-216 (289)
162 PF13181 TPR_8: Tetratricopept 37.4 59 0.0013 24.2 4.0 25 517-541 2-26 (34)
163 PF13176 TPR_7: Tetratricopept 36.2 39 0.00085 26.1 2.9 27 481-507 4-30 (36)
164 PF14559 TPR_19: Tetratricopep 36.0 38 0.00082 29.4 3.2 40 332-372 22-61 (68)
165 PF00515 TPR_1: Tetratricopept 35.9 43 0.00094 25.0 3.1 28 480-507 5-32 (34)
166 KOG1125 TPR repeat-containing 35.8 35 0.00075 42.6 3.8 98 333-447 428-526 (579)
167 PF12690 BsuPI: Intracellular 35.8 64 0.0014 30.3 4.8 21 1114-1134 2-22 (82)
168 PF02883 Alpha_adaptinC2: Adap 35.4 2.4E+02 0.0053 27.6 9.2 76 788-898 22-102 (115)
169 COG5159 RPN6 26S proteasome re 35.1 1.6E+02 0.0035 34.1 8.5 94 349-450 219-316 (421)
170 PF08626 TRAPPC9-Trs120: Trans 34.9 7.8E+02 0.017 34.6 16.9 36 783-818 644-681 (1185)
171 KOG3785 Uncharacterized conser 34.9 4.4E+02 0.0096 31.5 12.0 107 351-470 338-444 (557)
172 PF11614 FixG_C: IG-like fold 34.3 1.6E+02 0.0034 29.3 7.7 31 864-894 68-102 (118)
173 COG4783 Putative Zn-dependent 34.1 8.1E+02 0.018 30.6 14.6 92 423-520 378-471 (484)
174 PF13432 TPR_16: Tetratricopep 33.8 1E+02 0.0022 26.6 5.5 57 341-404 2-58 (65)
175 PF10300 DUF3808: Protein of u 32.2 1.1E+02 0.0024 38.1 7.5 57 343-404 312-374 (468)
176 PF07919 Gryzun: Gryzun, putat 32.1 1.6E+02 0.0035 37.2 9.1 73 618-726 478-550 (554)
177 PF05753 TRAP_beta: Translocon 31.6 2.6E+02 0.0057 30.4 9.2 82 618-730 31-112 (181)
178 COG3898 Uncharacterized membra 31.0 1E+03 0.022 29.2 14.3 154 332-507 115-294 (531)
179 KOG3620 Uncharacterized conser 29.8 3.4E+02 0.0075 37.1 11.1 36 615-650 690-725 (1626)
180 TIGR03079 CH4_NH3mon_ox_B meth 29.4 1.8E+02 0.0039 34.7 7.9 77 787-881 279-355 (399)
181 COG1729 Uncharacterized protei 29.4 9.3E+02 0.02 27.8 15.1 107 335-450 140-246 (262)
182 PRK15363 pathogenicity island 29.0 1.2E+02 0.0025 32.3 5.8 66 419-507 69-134 (157)
183 KOG1585 Protein required for f 28.8 2E+02 0.0044 32.8 7.8 67 451-519 28-95 (308)
184 PRK13202 ureB urease subunit b 28.3 1.6E+02 0.0035 28.9 6.1 72 782-878 11-84 (104)
185 COG3063 PilF Tfp pilus assembl 28.1 2.1E+02 0.0046 32.3 7.9 57 479-541 72-128 (250)
186 PF04744 Monooxygenase_B: Mono 27.6 1.9E+02 0.004 34.7 7.7 87 775-880 249-335 (381)
187 smart00769 WHy Water Stress an 27.6 2E+02 0.0043 27.7 6.9 30 623-652 13-42 (100)
188 PF12688 TPR_5: Tetratrico pep 27.5 2.4E+02 0.0052 28.5 7.6 58 481-541 6-63 (120)
189 KOG0439 VAMP-associated protei 27.5 2.3E+02 0.005 31.2 8.3 70 790-898 25-98 (218)
190 PF10602 RPN7: 26S proteasome 27.3 1.3E+02 0.0028 32.4 6.1 57 482-541 42-98 (177)
191 PF06030 DUF916: Bacterial pro 27.1 5.6E+02 0.012 25.9 10.2 32 859-890 82-116 (121)
192 PRK10153 DNA-binding transcrip 26.7 5.5E+02 0.012 32.6 12.3 68 426-517 427-495 (517)
193 PTZ00128 cytochrome c oxidase 26.6 1.5E+02 0.0032 33.4 6.4 27 785-811 133-159 (232)
194 KOG3617 WD40 and TPR repeat-co 26.0 1.7E+03 0.038 29.8 15.9 49 333-381 900-957 (1416)
195 PF07721 TPR_4: Tetratricopept 25.8 1.1E+02 0.0023 22.1 3.5 23 517-539 2-24 (26)
196 PF13374 TPR_10: Tetratricopep 25.7 1.2E+02 0.0025 23.3 4.1 31 479-509 5-35 (42)
197 PF05506 DUF756: Domain of unk 25.5 2.2E+02 0.0048 26.8 6.7 21 1115-1135 21-41 (89)
198 KOG0553 TPR repeat-containing 25.5 1.6E+02 0.0034 34.4 6.5 45 469-518 145-189 (304)
199 KOG2376 Signal recognition par 25.3 7.2E+02 0.015 31.8 12.3 120 338-465 378-505 (652)
200 KOG3785 Uncharacterized conser 24.6 80 0.0017 37.4 4.0 42 341-382 62-104 (557)
201 PF03704 BTAD: Bacterial trans 24.3 3.3E+02 0.0071 27.6 8.2 56 480-541 66-121 (146)
202 COG3175 COX11 Cytochrome oxida 24.3 3.2E+02 0.007 29.6 8.0 26 786-811 89-114 (195)
203 KOG1130 Predicted G-alpha GTPa 24.2 1.5E+02 0.0032 36.0 6.0 64 472-537 13-76 (639)
204 PF10440 WIYLD: Ubiquitin-bind 23.6 2.7E+02 0.0058 25.3 6.2 49 478-527 10-59 (65)
205 KOG4162 Predicted calmodulin-b 23.3 6.5E+02 0.014 33.1 11.7 109 383-505 656-783 (799)
206 PF03168 LEA_2: Late embryogen 23.1 4.3E+02 0.0093 24.6 8.3 51 630-713 1-51 (101)
207 PF13598 DUF4139: Domain of un 23.1 3.7E+02 0.008 31.3 9.4 80 1107-1223 236-316 (317)
208 COG4783 Putative Zn-dependent 23.0 2.4E+02 0.0052 35.0 7.7 62 474-541 338-399 (484)
209 PF04212 MIT: MIT (microtubule 21.7 1.4E+02 0.0031 26.6 4.4 33 475-507 4-36 (69)
210 COG1729 Uncharacterized protei 21.7 4.3E+02 0.0092 30.5 9.0 83 402-509 162-248 (262)
211 COG5010 TadD Flp pilus assembl 21.7 7.1E+02 0.015 28.6 10.6 53 484-542 142-194 (257)
212 PF13428 TPR_14: Tetratricopep 21.6 1.4E+02 0.0029 24.1 3.8 30 480-509 5-34 (44)
213 KOG0686 COP9 signalosome, subu 21.3 4.2E+02 0.0092 32.3 9.0 106 333-445 147-255 (466)
214 PF04184 ST7: ST7 protein; In 21.1 1.1E+03 0.024 29.7 12.7 124 378-510 194-345 (539)
215 KOG4648 Uncharacterized conser 20.9 1.3E+02 0.0028 35.5 4.7 31 479-509 100-130 (536)
216 PF04425 Bul1_N: Bul1 N termin 20.7 4.9E+02 0.011 32.2 9.8 117 763-882 135-272 (438)
217 KOG3865 Arrestin [Signal trans 20.7 2.4E+02 0.0053 32.9 6.7 70 785-881 205-277 (402)
218 PF00502 Phycobilisome: Phycob 20.4 4.6E+02 0.0099 27.7 8.5 134 259-405 10-154 (157)
219 PF13371 TPR_9: Tetratricopept 20.4 1.1E+02 0.0024 26.8 3.4 26 342-367 1-26 (73)
No 1
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=9.3e-106 Score=968.91 Aligned_cols=910 Identities=27% Similarity=0.372 Sum_probs=700.6
Q ss_pred cCCCCCcccccceEEEEEEeCCCCChhhHHHhhhccCCCCccccCCCCCcCCceEEEEEecCCCCChHHHHHHHHHHHhh
Q 000815 141 VSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVHDNQDGPSEKASKILTEMRST 220 (1269)
Q Consensus 141 ~~~s~hEtf~HPva~llvvSs~~~~pie~~~~L~~~~~~P~~~~~~~~d~~il~~yvLlHD~~~~~~~~a~~ll~~mK~~ 220 (1269)
+.+++||++| +||+++.| ++ +.+|. |+.|++|||||||||+++|+. +++++|++||++
T Consensus 1 ~~~sdhe~~~--------~ss~~~~p------~~--~s~pk-----w~~p~~l~~yvllhd~~~~~~-r~~~~~~~m~s~ 58 (960)
T KOG1938|consen 1 MIQSDHEFYN--------TSSTDMEP------QH--NSLPK-----WFAPNTLKHYVLLHDSSSGDS-RADELLEEMKST 58 (960)
T ss_pred CCccchhhhh--------cccccccc------cc--cCCcc-----cccccccceeEEEecCCCcch-hHHHHHHHHHHH
Confidence 4679999999 89999999 33 34888 566799999999999999998 999999999999
Q ss_pred cCCCceEEEEecCCCCCCCcCCCCCCCCCCCCCCCCCCCcccC-----ChhhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000815 221 FGPNDCQLLCINSSEDGRIERQDNPWASHKSDASPSKHLGSFL-----NNDDFSEIKDVMQELASKHIIPYMEQKIRVLN 295 (1269)
Q Consensus 221 fG~~~c~lL~inS~~~~~~~~~~d~w~~~~~~~~~~~~~~~~L-----~~~D~~~ir~fv~e~v~~~liP~mEr~I~~ln 295 (1269)
||.++|+||+|||... ....+|||.+++...+-. +.+|.| +..|.++|++|+++|..++++||||+.+|.++
T Consensus 59 ~g~~~c~ll~~ns~~~--~~~~~~~w~~~~~~~~~~-~~~~~~~g~d~~~~d~~~i~~ilq~f~~r~lipy~E~~vr~l~ 135 (960)
T KOG1938|consen 59 YGNDNCQLLQINSDSE--SAEMPDPWAEFDEFNSVL-HSTPGLNGADSTVFDYEHIMDILQHFANRALIPYIEKAVRILL 135 (960)
T ss_pred hCCCceeEEEecCcch--hhhcCChHHHHhhccchh-hccCCCCCccchhhhHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 9999999999999865 678999999987654322 111223 45667999999999999999999999999999
Q ss_pred HhhhccCcCchhhh--hHhhhcCCCCCCCCCCCCCCccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchh
Q 000815 296 QQVSATRKGFRNQL--KNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWK 373 (1269)
Q Consensus 296 e~v~~~RKgi~~~l--~~~w~r~~k~~~~~~~~~~~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~ 373 (1269)
|+|.+ |||+++.| ++.||.. +...+++..+.+|+.++.|+|+||+||++||+|+|..|+..|+..++||++|+||.
T Consensus 136 e~i~~-~KGvs~sf~~~~rwfig-s~y~p~~~~~ilys~ds~e~q~Rk~aD~~~~f~h~~~a~~~y~stkrd~~nd~am~ 213 (960)
T KOG1938|consen 136 EQIAQ-KKGVSSSFSATKRWFIG-STYAPDNTLGILYSFDSGEFQTRKGADLLFMFGHPNLAFDAYHSTKRDFNNDKAMV 213 (960)
T ss_pred Hhhhc-cccchhchhHHHHHHhc-CccCCCCcceeEecccchHHhhhhccchhhhhccccchhhhhhhhhcchhhhhHHh
Confidence 99996 99999994 4567643 33445566889999999999999999999999999999999999999999999999
Q ss_pred hhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hh
Q 000815 374 RYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LH 452 (1269)
Q Consensus 374 ~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~ 452 (1269)
|+||++||+++++|++++..+.+.+|||+|+.+|...+++ ++.|.||+++++|+++.+|.|.|||..++|++++++ ++
T Consensus 214 ~~a~alEm~sls~Fvq~~a~q~~sqyme~a~~~~~~i~k~-~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~ 292 (960)
T KOG1938|consen 214 YYAGALEMRSLSAFVQPDATQFPSQYMENAFPLYRLILKN-YQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLL 292 (960)
T ss_pred HhhhhhhhhhhhhhcCCcchhhHHHHHhhhhHHHHHHHhh-ccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhh
Confidence 9999999999999999988877889999999999988877 689999999999999999999999999999999886 99
Q ss_pred hHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCH
Q 000815 453 SAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH 532 (1269)
Q Consensus 453 sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~ 532 (1269)
+||++||||+||..++|+|.||++||+||||+||.+|||+.||+|||++|+++|+++.|..+++|++|++++ .|.+-+.
T Consensus 293 ~allleqaal~f~~tkp~m~~ktffHpVLal~r~s~anqp~ha~R~y~~ai~v~~~~~ws~~edh~~f~i~~-~y~l~~~ 371 (960)
T KOG1938|consen 293 SALLLEQAALCFGSTKPPMPRKTFFHPVLALIRFSSANQPKHALRCYRQAIPVLKKPTWSFAEDHLYFTILH-VYLLCQE 371 (960)
T ss_pred hHHHHHHHHHHhhcCCCCccchhhcceeehhhhcccCCChhHHHHHHHHHhhhcCCCCcchhHHhHHHhHHH-hhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 6776666
Q ss_pred HHHH---HHHHH----------------------hcCCCCccCCCC-ccEEeeCceEEEecCC--CCccccccchh----
Q 000815 533 DIAV---AHMLE----------------------KTGKTFEVVKPR-LPIINISSLKVIFEDH--RTYASAEAANV---- 580 (1269)
Q Consensus 533 ~~Av---~hll~----------------------~~~~~~~~~~Lp-LP~I~~~~irV~~~~~--~~~~~~~~~~~---- 580 (1269)
|+|. +|++. ...+..++++++ +|.++.+.++|++++. ++++......+
T Consensus 372 D~a~~~f~~~i~~~~kqS~~~q~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~~t~~e~~~at~~~~~ 451 (960)
T KOG1938|consen 372 DDADEEFSKLIADCMKQSKGLQTEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTRSTDAEALPATHQYLV 451 (960)
T ss_pred hhHHHHHHHHHhhhhhcChHHHHHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCCCcchhhhhhhhhhcc
Confidence 6554 33333 123344788888 9999999999999984 44444333333
Q ss_pred hHHhhHhhhhhccccccccccchhHhhhhhh-hhhcccCCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCccc
Q 000815 581 RESLWRSLEEDMIPSLSTARSNWLELQSKLI-MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM 659 (1269)
Q Consensus 581 ~~~~W~~lEe~lv~s~~~~~~~w~~~~~~~~-~k~~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~ 659 (1269)
.+.+|..||++.+..++.+..+|...+-... ..+..+.+++|+||++++.|+++|||++++.+++++|+|++...+. .
T Consensus 452 sd~~w~~lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~-s 530 (960)
T KOG1938|consen 452 SDNIWPSLERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNL-S 530 (960)
T ss_pred ccccchhHHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhcccccc-c
Confidence 6679999999976555555555533222111 2344568999999999999999999999999999999999976322 2
Q ss_pred ccCCCCCccccccccccccccccccCCCCCCceeeeeeeEEEcCCceEEEEEEEEeCceeEEEEEEEEEEE------ccc
Q 000815 660 ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGS 733 (1269)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v~L~~~P~~~G~L~I~Gv~~~L------~~~ 733 (1269)
..++..+... ..|..+ +. .....+.+.+.|.+++.|...|+..|.++|.|..++. .+.
T Consensus 531 ~~~Na~s~~~-------~~Pe~~-----~~----s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as 594 (960)
T KOG1938|consen 531 GSSNAYSHSQ-------SSPELI-----DD----SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAAS 594 (960)
T ss_pred cccccccccc-------cChhhh-----hh----hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhh
Confidence 2222211000 001000 00 1123688999999999999999999999999999999 567
Q ss_pred eeeeecccccchhhhhcccC-ccccCCCCCceEEEEecCCCeEEEEEccCCccccCCcEEEEEEEEEecCccccceEEEE
Q 000815 734 LVGVYNFESNLVKKKIAKGR-RKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMK 812 (1269)
Q Consensus 734 v~g~~~F~~~g~rl~~tk~r-~~~~~~pd~rL~~~V~~~~P~Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~ 812 (1269)
+.|...|+++|+|++.++++ .+.++++|.||.+.+.+.+|.|+++|+++|..+||||++++.|+++|.|.+|+.+|+++
T Consensus 595 ~yg~~~le~qgirl~~~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a 674 (960)
T KOG1938|consen 595 VYGACSLEIQGIRLNNTKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLA 674 (960)
T ss_pred hhcccchhhhhcchhhhcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHH
Confidence 88999999999999888754 47899999999998899999999999999999999999999999999999999999999
Q ss_pred ecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEE
Q 000815 813 VSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITI 892 (1269)
Q Consensus 813 ~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~Lf 892 (1269)
+++|+| . ..+...+.+...+ ..++...... +.......+.++.|.+|+++++++|+|++..+. -+
T Consensus 675 ~s~~~~-~-----~l~n~s~~~~~~~-~a~i~~~~t~---r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~ 739 (960)
T KOG1938|consen 675 ASWPYF-A-----VLENESHRKGKMN-AANISQQETT---RFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KP 739 (960)
T ss_pred hcChhh-h-----hcccccccccccC-Hhhhhhhhhh---hhccccCCCcccccCCCceeeeeeeEecccccc-----cc
Confidence 999977 1 1111122333222 1111110000 111222345678999999999999999997660 11
Q ss_pred EEecCCCcccceEEEEEEEEEEEEecceeEEEEEEeeccccceEEEEEEEEeCCCCccEEEEEEEeeecceeEeecCCCC
Q 000815 893 YYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFD 972 (1269)
Q Consensus 893 yYe~~~~~~~~~~R~~R~~~~l~V~pSL~vs~~~~~s~s~~~e~~v~v~V~N~~~~e~f~l~qvs~vS~~W~l~~l~~~~ 972 (1269)
+++ +.+++. .+..-|.....-..+++++.++-.|.....+.-.
T Consensus 740 w~r------------------------------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~ 782 (960)
T KOG1938|consen 740 WLR------------------------------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSEN 782 (960)
T ss_pred hHH------------------------------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhh
Confidence 211 011110 1122222222236777777777778888777655
Q ss_pred ccCCcccccccceEEEEEEEeecCCCCCCCCCCCCCCccccCceee--cCCCcccccccCCcchhhhHHHhhhhhcccCC
Q 000815 973 SIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVSQDD 1050 (1269)
Q Consensus 973 ~~~~~~~~~~~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l--~~~~~~~~~~s~~p~~~f~~~~~~~~~~~~~~ 1050 (1269)
+..|+.....++.++++++.+.+...++..++. .+.-+.+ .+.....++.+++|.+.|+ ...+
T Consensus 783 ~dvpsa~~~~~~~ls~~~~~~~~~~~~~e~e~~------i~~~~~~~s~~~~~~~~~~~st~~~~~~---------~~~~ 847 (960)
T KOG1938|consen 783 TDVPSAFTPSGKNLSRTSVSFIGRAVEIESEQP------IVARLVPLSQGETIKFFWLTSTTEVTPP---------AEIQ 847 (960)
T ss_pred ccCccccCccccccceeeeccccccccccccCC------cccceeeccCCcchhhhhhccccccCCC---------hhhc
Confidence 566777788899999999988887665532331 2222333 2122333445555555444 1112
Q ss_pred CCcceEEEEecccccCCCCCCCCCccccceeeecccccccCceEEEEecCceeeccCCCcceeEeEEEEEEcCCCccEeE
Q 000815 1051 TNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFV 1130 (1269)
Q Consensus 1051 ~~~~~~i~~w~~~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~~~h~f~~~~c~v~~~l~l~N~s~~~~~~ 1130 (1269)
...=+|.+.|+|.+++| ||+.. .+-++-+++|.|....|.+..++.+.|.++..-+
T Consensus 848 ~~~~~i~~~w~a~vv~~------------eg~~~-----------~~g~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~- 903 (960)
T KOG1938|consen 848 STMDTIVILWKANVVND------------EGVTR-----------FIGPFVKLKKLFKTDSCLSSLRISCETTSKEISH- 903 (960)
T ss_pred cChhhHHHhcccccccc------------cceee-----------ecCCcceehhhccCCcccccchhhhhhhhhhcch-
Confidence 22234889999998877 12111 1127889999999999999999999999985432
Q ss_pred EEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccccccccCCccccccCCccCcCCceEEeccccceeEecCCc
Q 000815 1131 RVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMS 1210 (1269)
Q Consensus 1131 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~g~~~~~~~l~p~~ 1210 (1269)
|.+.-.. -+.+....+|+-||.+|+....- . .|.|.++|++|++++|
T Consensus 904 ---t~~~~~~--------~p~t~~~~n~~~~~~~v~~~~~~--------------------~--~w~~~~~~k~q~~~~~ 950 (960)
T KOG1938|consen 904 ---TADHLCE--------LPITLLISNNDLAWRPVSVSIEE--------------------S--SWIGRPVYKQQIGILE 950 (960)
T ss_pred ---hhhhhhc--------ccchhhhcCCcccccccchhhhh--------------------h--cccCCcceeeeecccc
Confidence 3332222 13445678899999988655441 1 1999999999999999
Q ss_pred eeeEeeEEEE
Q 000815 1211 TTDIAMKVCL 1220 (1269)
Q Consensus 1211 ~~~~~L~~~~ 1220 (1269)
.++++|++|+
T Consensus 951 ~~~~~m~~~~ 960 (960)
T KOG1938|consen 951 EASLEMKWKI 960 (960)
T ss_pred cceeeeEecC
Confidence 9999999986
No 2
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=100.00 E-value=1.4e-79 Score=731.20 Aligned_cols=361 Identities=45% Similarity=0.731 Sum_probs=314.4
Q ss_pred eCCCCChhhHHHhhhccCCCCcccc---CCCCC-c-CCceEEEEEecC-CCCChHHHHHHHHHHHhhcCCCceEEEEecC
Q 000815 160 SSEDEQPINRFIDLFNTNKLPSLLN---DGAMD-P-KILKHYLLVHDN-QDGPSEKASKILTEMRSTFGPNDCQLLCINS 233 (1269)
Q Consensus 160 Ss~~~~pie~~~~L~~~~~~P~~~~---~~~~d-~-~il~~yvLlHD~-~~~~~~~a~~ll~~mK~~fG~~~c~lL~inS 233 (1269)
||+++||+++|++|+++.+.++... +.|++ + |+++|||||||+ ..++.++++++|++||++||.++|++|+|||
T Consensus 1 Ss~~~~pi~~~~~L~~~~~~~~~~~~~~P~w~~~~~d~l~~yvllhD~~~~~~~~~~~~~~~~~k~~~g~~~c~lL~ins 80 (414)
T PF12739_consen 1 SSSDPDPIESFRKLYQSQKNPPFNSPQLPKWLNGPMDILKYYVLLHDESDGDDEEDAQALFESMKSTFGVCNCHLLRINS 80 (414)
T ss_pred CCCCCchHHHHHHHHHhhcCCCcccccCcchhcCCCccceEEEEEEcCCCcchhHHHHHHHHHHHHHcCCCcceEEEecc
Confidence 7899999999999998765433322 45774 4 699999999999 4555789999999999999998899999998
Q ss_pred CCCCC--------CcCCCCCCCCCCCCCCC----CCCCcccCChhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhcc
Q 000815 234 SEDGR--------IERQDNPWASHKSDASP----SKHLGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSAT 301 (1269)
Q Consensus 234 ~~~~~--------~~~~~d~w~~~~~~~~~----~~~~~~~L~~~D~~~ir~fv~e~v~~~liP~mEr~I~~lne~v~~~ 301 (1269)
...+. .+.++|+|+++.+.... ....+++|+.+|++.||.||+||+.++|||||||+|+.|||||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~L~~~d~~~i~~fv~efv~~~liP~mEr~i~~lnd~v~~~ 160 (414)
T PF12739_consen 81 SRSPSNAPGDDDSVPLPPDPWSSALEELYRISSSSISHGCCLSEEDVNSIRDFVREFVTQSLIPHMERKIRQLNDQVASP 160 (414)
T ss_pred cCCCccccccccccCCCCCcccchhhhhcccccccCcccccCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhh
Confidence 76432 23468999998765332 2345667999999999999999999999999999999999999999
Q ss_pred CcCchhhhh---HhhhcCCCCCCC----------CCCCCCCccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhcc
Q 000815 302 RKGFRNQLK---NLWWRKGKEETS----------DSPNGPMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKL 368 (1269)
Q Consensus 302 RKgi~~~l~---~~w~r~~k~~~~----------~~~~~~~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~ 368 (1269)
||||+|+|+ |+||++++.+.. .++.+++|.++|+|+||||||||+|||||||+||++|+++|+||++
T Consensus 161 RKgi~~~l~~~skk~f~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~S~E~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~ 240 (414)
T PF12739_consen 161 RKGITNRLFSASKKWFGSSKSSSSSSSSSPSSSSYNPSQNYYSADSPEAQMRRLADLAFMLRDYELAYSTYRLLKKDFKN 240 (414)
T ss_pred cccchhhHHHHHHHhccCCCCCccccccccccCCCCcccCccCCCChHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh
Confidence 999999996 567776554322 1224579999999999999999999999999999999999999999
Q ss_pred ccchhhhhchHHHHHHHHHhccCChh------HHHHHHHHHHHHHhhcCC---CchhhHHHHHHHHHHHHHhcCchHHHH
Q 000815 369 DKAWKRYAGVQEMMGLTYFMLDQSRK------EAEYCMENAFTTYAKIGS---SGQQNATRCGLWWVEMLKARHQYKDAA 439 (1269)
Q Consensus 369 Dkaw~~~A~a~EM~als~ll~~~~~~------~~~~~le~A~~~Y~~~~~---~~~~~A~R~~ll~~e~l~~~~~~~eaa 439 (1269)
||||+|+|||+||+|+|+||++++.. ++++|||+|+++|.+++. +...+|+||+++.+|+++++|.|.+|+
T Consensus 241 Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~ 320 (414)
T PF12739_consen 241 DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAA 320 (414)
T ss_pred chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHH
Confidence 99999999999999999999987643 789999999999999432 234699999999999999999999999
Q ss_pred HHHHHHhCc--Cc-hh---hHHHHHHHHHhh--hcCC-C-CC---CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 000815 440 TVYFRICGE--EP-LH---SAVMLEQASYCY--LLSK-P-PM---LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 506 (1269)
Q Consensus 440 ~~l~r~~~e--~~-l~---sAlllEqaA~c~--l~~~-~-p~---~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY 506 (1269)
.+++|..++ +. ++ +|||+||||+|| +... + ++ +||||||+|||||+|.+|||++||+|||.+|+.+|
T Consensus 321 ~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY 400 (414)
T PF12739_consen 321 DQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVY 400 (414)
T ss_pred HHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 999998877 53 77 999999999999 7763 3 56 89999999999999999999999999999999999
Q ss_pred cCCCccchHHHHHH
Q 000815 507 KGSTWSHIKDHVHF 520 (1269)
Q Consensus 507 ~~~~W~~i~dhi~~ 520 (1269)
++.+|..++|||+|
T Consensus 401 ~~~~W~~~~dhl~f 414 (414)
T PF12739_consen 401 EGKGWSLIEDHLHF 414 (414)
T ss_pred CCCCCCCcccccCC
Confidence 99999999999986
No 3
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=100.00 E-value=5.3e-30 Score=339.63 Aligned_cols=747 Identities=18% Similarity=0.145 Sum_probs=441.8
Q ss_pred CccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCC----------------
Q 000815 329 MYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS---------------- 392 (1269)
Q Consensus 329 ~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~---------------- 392 (1269)
.+.....-.+...+|||++|.|.|..|+..|..+..-.++-..|.|+|+|+|.+++|++|....
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~ 314 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPI 314 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCC
Confidence 4455567778889999999999999999999999988888889999999999999999985210
Q ss_pred ---------------------------------------hhHHHHHHHHHHHHHhhcC------CCchhh---HHHHHHH
Q 000815 393 ---------------------------------------RKEAEYCMENAFTTYAKIG------SSGQQN---ATRCGLW 424 (1269)
Q Consensus 393 ---------------------------------------~~~~~~~le~A~~~Y~~~~------~~~~~~---A~R~~ll 424 (1269)
...+....++|++.|.++. .+...| .+|++=+
T Consensus 315 ~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~ 394 (1185)
T PF08626_consen 315 SSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARF 394 (1185)
T ss_pred CCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHH
Confidence 0012346889999998875 121122 3666666
Q ss_pred HHHHHH-------------hcC---chHHHHHHHHHHhCc-----CchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 000815 425 WVEMLK-------------ARH---QYKDAATVYFRICGE-----EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSG 483 (1269)
Q Consensus 425 ~~e~l~-------------~~~---~~~eaa~~l~r~~~e-----~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg 483 (1269)
.+.+.. ... .-.|++.++.|+..- +..-.+.++.-.|..|- .-++.||.||.+.+++
T Consensus 395 l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~--~lG~~RK~AFvlR~l~ 472 (1185)
T PF08626_consen 395 LVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYG--SLGFHRKKAFVLRELA 472 (1185)
T ss_pred HHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHH--hcchhHHHHHHHHHHH
Confidence 665550 000 334777777776642 12334455555666553 5678999999999999
Q ss_pred HHHHhC-CCchHHHH-HHHHHHHhhcC---------------CC-ccchHHHHHHHHHHHHHHhCCHHHHHHHHHH---h
Q 000815 484 DRYKKC-DQINHAIR-TYRSAVSVYKG---------------ST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE---K 542 (1269)
Q Consensus 484 ~ry~ka-gq~~~Alr-Cy~~a~~vY~~---------------~~-W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~---~ 542 (1269)
..+... .++...+| .+......|.= .+ |..++-+|+..+-..+..+||.+.+++|... .
T Consensus 473 ~~~~~~l~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~~ 552 (1185)
T PF08626_consen 473 VQLVPGLIHWHQSYRSLLEELCKGYGISLDPESSSEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLRT 552 (1185)
T ss_pred HHhccccCCcchHHHHHHHHHhccCcccCCccccccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999753 33333333 33445566642 12 9999999999999999999999999876543 0
Q ss_pred -------------------cCC--CCccCCCCccEEeeCceEEE-ecCC-CCccccc-cchhhHHhhHhhhhhccccccc
Q 000815 543 -------------------TGK--TFEVVKPRLPIINISSLKVI-FEDH-RTYASAE-AANVRESLWRSLEEDMIPSLST 598 (1269)
Q Consensus 543 -------------------~~~--~~~~~~LpLP~I~~~~irV~-~~~~-~~~~~~~-~~~~~~~~W~~lEe~lv~s~~~ 598 (1269)
... ......+.+|..+.--+|-+ +... |.. ... ........|.. ...+.
T Consensus 553 ~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~-~~i~~~~~~~~~~~~------~~~~~ 625 (1185)
T PF08626_consen 553 YSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLK-PDILPPHPRKSEASS------QSINK 625 (1185)
T ss_pred HhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCc-cchhhhhhhhhhhcc------cCCCC
Confidence 000 01222333443322222222 1110 110 000 00000111111 01111
Q ss_pred c--ccchhHhhhhhhhhhcccCCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCcccccccccc
Q 000815 599 A--RSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEES 676 (1269)
Q Consensus 599 ~--~~~w~~~~~~~~~k~~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1269)
+ ..+|.. +...+......++|+||+++|.|+|+||++++|.|++|+|.+++.+
T Consensus 626 ~pFYnPf~k---~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~---------------------- 680 (1185)
T PF08626_consen 626 GPFYNPFSK---KSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVP---------------------- 680 (1185)
T ss_pred CCcCChhhc---CCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCc----------------------
Confidence 1 122221 0001122347899999999999999999999999999999998753
Q ss_pred ccccccccCCCCCCceeeeeeeEEE-cCCceEEEEEEEEeCceeEEEEEEEEEEEccceeeeeccc------ccchhhhh
Q 000815 677 KLLTTTGEMNSDTSSFTLSEVDISL-GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE------SNLVKKKI 749 (1269)
Q Consensus 677 ~~~~~~~~~~~~~~~f~~~~~~i~L-~p~Etk~v~L~~~P~~~G~L~I~Gv~~~L~~~v~g~~~F~------~~g~rl~~ 749 (1269)
|+....++.| +|.+++.|+|.++|+.+|.|+|+|+.+++.|....+.... ++++..+.
T Consensus 681 ---------------fes~~~s~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~~~~~~~~~~~k~~~~~~ 745 (1185)
T PF08626_consen 681 ---------------FESYPVSIVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFFPIFKSEWGSIKGKKLKD 745 (1185)
T ss_pred ---------------cccceeeeEecCCCcceEEEEEEEECccceEEEEEEEEEEcccccceecccCcccchhhhhhccc
Confidence 1122345665 9999999999999999999999999999998654332111 11222211
Q ss_pred c--ccCccccCC--------CCCceEEEEecCCCeEEEEEc---cCCccccCCcEEEEEEEEEecCccccceEEEEecCC
Q 000815 750 A--KGRRKVKSS--------PSNDLKFIVIKSLPKLEGLIH---PLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHP 816 (1269)
Q Consensus 750 t--k~r~~~~~~--------pd~rL~~~V~~~~P~Lev~~~---~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P 816 (1269)
. ++++..+.. ....++++|+|++|.|++.+. +.+.+||+||.+.++|+|+|.|++||+.|.+.+.+.
T Consensus 746 ~~~~~~~~~~~~~~l~~~~~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS 825 (1185)
T PF08626_consen 746 KFRKGSRLDKPSPPLESESPKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDS 825 (1185)
T ss_pred ccccccccccccccccccccccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEec
Confidence 1 111111111 124699999999999999987 444699999999999999999999999999997632
Q ss_pred c--eEE-eCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCCCCeEEEEEEEEecC--CceeEEEEE
Q 000815 817 R--FLS-IGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV--PGKISLSIT 891 (1269)
Q Consensus 817 ~--~~~-~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~--~G~~~l~~L 891 (1269)
. .+. ...+.++. +..+ + ++.. ...+. ..+.+.....|+||++.++++.+.|.. .+-+...+.
T Consensus 826 ~~~~~~~~l~~k~l~---~~e~-y----elE~---~l~~~--~~~~i~~~~~I~Pg~~~~~~~~~~~~~~~~~~~~~~i~ 892 (1185)
T PF08626_consen 826 TIEPLQKALSNKDLS---PDEL-Y----ELEW---QLFKL--PAFRILNKPPIPPGESATFTVEVDGKPGPIQLTYADIQ 892 (1185)
T ss_pred cHHHHhhhhhcccCC---hhhh-h----hhhh---hhhcC--cceeecccCccCCCCEEEEEEEecCcccccceeeeeEE
Confidence 1 100 00000000 0000 0 0000 00001 113332222899999999999998763 357778888
Q ss_pred EEEecC-CCcccceEEEEEEEEEEEEecceeEEEE-EEeec------------------------cccceEEEEEEEEeC
Q 000815 892 IYYEMG-DVSSVIKYRLLRMHYNLEVLPSLNVSFQ-ISPWS------------------------SRLQQYLVRMDVVNQ 945 (1269)
Q Consensus 892 fyYe~~-~~~~~~~~R~~R~~~~l~V~pSL~vs~~-~~~s~------------------------s~~~e~~v~v~V~N~ 945 (1269)
+.|... +.....=.|-+..-.+++|.||++|.-. +.|-. ......+|-|||.|.
T Consensus 893 l~y~~~~~~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~clL~lDlrNs 972 (1185)
T PF08626_consen 893 LEYGYSGEDSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLNSDSVSSNSDSWISYITSLKSDVNDDSSDYCLLLLDLRNS 972 (1185)
T ss_pred EEecccCCCCCCCeeEEEEEEEEEEEeceEEEeeeeEEecccccccccCcchhhhhhhhcccccCCCCCeEEEEEEEEec
Confidence 888742 2234455688889999999999998753 22220 122346788899998
Q ss_pred CCCccEEEEEEEeeecceeEeecCCCCccCCcccccccceEEEEEEEeecCCCCCCC--CCCCCC--CccccCceeecCC
Q 000815 946 TSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSS--DDTSSP--SRLLGSDVSLQGT 1021 (1269)
Q Consensus 946 ~~~e~f~l~qvs~vS~~W~l~~l~~~~~~~~~~~~~~~q~~~~~f~~~~~~~~~~~~--~~~~~~--~~~~~~d~~l~~~ 1021 (1269)
...+ +.+ +|... .+.......|.||++.+..+-++|+.-.+..- ....+. +|..... .+.
T Consensus 973 w~~~-~~v-~l~~~-----------~~~~~~~~~I~pg~t~Ri~vPi~Ri~l~~~~~~~~pip~l~~~rqfv~s-k~s-- 1036 (1185)
T PF08626_consen 973 WPNP-LSV-NLHYD-----------EDFSSSEITIEPGHTSRIIVPIKRIYLEDPDFSFKPIPSLSRNRQFVVS-KLS-- 1036 (1185)
T ss_pred CCCc-eEE-EEEec-----------cCccccceEECCCCeEEEEEEecccccCCcccccCcCCCcccCceeEEC-CCC--
Confidence 7664 221 01110 01111234789999999999999985322100 011111 1110011 110
Q ss_pred CcccccccCCcchhhhHHHhhhhhcccCCCCcceEEEEecccccCCCCCCCCCccccceeeecc-c-------ccccCce
Q 000815 1022 ADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHC-S-------ILGKTPI 1093 (1269)
Q Consensus 1022 ~~~~~~~s~~p~~~f~~~~~~~~~~~~~~~~~~~~i~~w~~~~~~~~~~~~~~~~~g~~h~~~~-~-------~~~~~~i 1093 (1269)
.+ .....-.-|..+|.+-. .+=..|+..... .|...+... . .....+|
T Consensus 1037 ~e----ee~~~re~FW~RE~ll~----------~l~~~W~~~~~~----------~G~i~lR~~irLt~~mv~~L~~~~i 1092 (1185)
T PF08626_consen 1037 EE----EERAMRELFWYREELLS----------RLKGTWKESSNS----------SGEIDLRGIIRLTPRMVDILRLDPI 1092 (1185)
T ss_pred HH----HHHHHHHHHHHHHHHHh----------hcceEEEcCCCC----------cEEEEcccccccCHHHHHhhccCcc
Confidence 00 00112223555555542 133678763221 233333222 0 1112345
Q ss_pred EEEE--ecCceee---cc--CCC-cceeEeEEEEEEcCCCccEeEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccc
Q 000815 1094 TWLV--DGPRTLH---HN--FNA-SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDV 1165 (1269)
Q Consensus 1094 ~~~l--~~p~~~~---h~--f~~-~~c~v~~~l~l~N~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1165 (1269)
.|.+ .....-. +. +.- ---.+++++++.|.+..++.+.....-...+..
T Consensus 1093 ~i~~~l~~~~~~~~~~~~~~~~v~~~~f~~l~v~i~N~s~~~i~l~~~~~~~~~~~~----------------------- 1149 (1185)
T PF08626_consen 1093 QIDFSLSDDSDSVKVGESSKFSVQVDEFYTLRVTITNRSSRPISLRLQPSLDHQNGN----------------------- 1149 (1185)
T ss_pred ceEEEEcccccccccCcceeEEEecCCcEEEEEEeecCCCCceeeEeeeeccCCCcc-----------------------
Confidence 4444 2222111 00 000 011268899999999999883322211111100
Q ss_pred cccccccccccCCccccccCCccCcCCceEEeccccceeE-ecCCceeeEeeEEEE
Q 000815 1166 PVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCL 1220 (1269)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~ 1220 (1269)
..+.....+.|.|..+..+. |+|++++++.+.+||
T Consensus 1150 --------------------~~~~~~~ril~~G~Lq~~l~~l~p~~~~~~~~~lif 1185 (1185)
T PF08626_consen 1150 --------------------VALDLDRRILWNGSLQQPLPELEPGESTEHELSLIF 1185 (1185)
T ss_pred --------------------cccCcCCeEEEEccCcccccccCCCceEEEEEEEEC
Confidence 12455788999999999977 999999999999987
No 4
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.4e-19 Score=218.87 Aligned_cols=412 Identities=17% Similarity=0.099 Sum_probs=241.4
Q ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHH---h------cC-------------C-CCccCCCCccEEeeCceEEEec
Q 000815 511 WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE---K------TG-------------K-TFEVVKPRLPIINISSLKVIFE 567 (1269)
Q Consensus 511 W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~---~------~~-------------~-~~~~~~LpLP~I~~~~irV~~~ 567 (1269)
|+.++--+++.+-..+.++||++.|++|+.. . .+ . ...+..+--|++... ..|+.+
T Consensus 557 w~~LQ~kvL~eii~~a~ragd~~aa~~~~s~Ll~~yypll~sS~q~~Lfk~l~n~~~~~~s~ts~~~~i~~~d-~~iild 635 (1235)
T KOG1953|consen 557 WSNLQFKVLNEIISLADRAGDYRAALLLISLLLLTYYPLLSSSQQISLFKALRNTYLFASSATSYWDPIHIND-PVIILD 635 (1235)
T ss_pred chhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHhHHhhcccccccccceEecC-ccEecC
Confidence 9999999999999999999999999876544 0 00 0 001122222333222 223333
Q ss_pred CCCCc-----cccccch-----hhHHhhHhhhhhccccccccccchhHhhhhhhhhhcc--cCCccccCceEEEEEEEEC
Q 000815 568 DHRTY-----ASAEAAN-----VRESLWRSLEEDMIPSLSTARSNWLELQSKLIMKKFE--ESNICVAGEPVKVDIEFKN 635 (1269)
Q Consensus 568 ~~~~~-----~~~~~~~-----~~~~~W~~lEe~lv~s~~~~~~~w~~~~~~~~~k~~~--~~~~~vvgE~i~V~V~L~N 635 (1269)
..+.. .+++... ..+..|+..|. .+|+-.+-.. +... ..-++|||||++|.|+++|
T Consensus 636 ~~~lt~fPliss~~vlel~~Nrart~~pn~~e~----------spFiytpfsk--~~dN~~~~LvwVvdepvef~v~v~N 703 (1235)
T KOG1953|consen 636 PFMLTDFPLISSSEVLELIHNRARTGLPNSIEK----------SPFIYTPFSK--RQDNNQSKLVWVVDEPVEFSVYVRN 703 (1235)
T ss_pred cccccccccccChhHHHHHhcccccCCCccccc----------CceEeccccc--cccCccceEEEEeCCceEEEEEEcC
Confidence 33221 1111100 01122333331 1343333211 1111 1348999999999999999
Q ss_pred cccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeEEEcCCce-EEEEEEEE
Q 000815 636 PLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAET-ILVQLMVT 714 (1269)
Q Consensus 636 PL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Et-k~v~L~~~ 714 (1269)
|+.+++.+.+|+|..+++. |.....++.+.|... ++++|.++
T Consensus 704 p~~fdl~V~Di~L~~egvn-------------------------------------F~~~~vs~~~Ppns~~e~Irl~g~ 746 (1235)
T KOG1953|consen 704 PLSFDLEVQDIHLETEGVN-------------------------------------FKCSHVSFTMPPNSIAERIRLTGT 746 (1235)
T ss_pred ccceeEEEeeEEEEecccc-------------------------------------ceeeeeeeecCcccccceEEEecc
Confidence 9999999999999987642 333345899999987 99999999
Q ss_pred eCceeEEEEEEEEEEEccceeeeecccccchhhhh-cccCc---c-ccCCCCCceEEEEecCCCeEEEE----EccCCcc
Q 000815 715 PKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI-AKGRR---K-VKSSPSNDLKFIVIKSLPKLEGL----IHPLPER 785 (1269)
Q Consensus 715 P~~~G~L~I~Gv~~~L~~~v~g~~~F~~~g~rl~~-tk~r~---~-~~~~pd~rL~~~V~~~~P~Lev~----~~~~P~~ 785 (1269)
|...|.|.|+|++.+.+|...-.+.|...|-+-++ ..... . ..| .++.+.|.|++|-+... -.+..-.
T Consensus 747 P~e~gpl~i~gy~v~cfg~~~~lq~f~~~gd~~~s~~v~~e~~kl~~vy---l~~~i~ilP~~P~~~l~~d~k~~s~~~i 823 (1235)
T KOG1953|consen 747 PTETGPLHIVGYRVKCFGCEPILQYFYEAGDKHKSLHVYLEKSKLVNVY---LRSLITILPLWPYFPLKKDLKTKSFDCI 823 (1235)
T ss_pred ccccCceeeeeEEEEEeeechHHHHHHhcccccCCccceeccchhheee---cccccccCCCcccchhhhcccCCCccEE
Confidence 99999999999999999976656777777654211 11111 1 122 24567899999955542 2344458
Q ss_pred ccCCcEEEEEEEEEecCccccceEEEEecC------CceEEeCCCCCCCccchhhhhcccccccc-cc-----------C
Q 000815 786 AYAGDLRHLVLELKNQSDFSVKNLKMKVSH------PRFLSIGNRDDMTKEFPACLQKMTNAEQS-VA-----------G 847 (1269)
Q Consensus 786 ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~------P~~~~~g~~~~~~~~~p~~l~~~~~~~~~-~~-----------~ 847 (1269)
+|+||...+.|+++|.|.+|+....+.+.. +...++...++..-.++.|..+..-..+- .+ -
T Consensus 824 vy~Gq~~d~~Itv~N~s~~pin~~~v~~~~~i~q~~~p~~~~~~~e~~s~~~e~~~l~~~l~ai~~~P~is~n~~~el~~ 903 (1235)
T KOG1953|consen 824 VYAGQPTDLSITVQNLSSGPINFAEVETGELIYQMLIPNTSFVEAEHISVLFEDSSLKAFLQAIADKPVISANRLYELQF 903 (1235)
T ss_pred EEcCCcceEEEEEEecCccceEEEEEeeccchhhcCCCceeecCchhhHhhccCccchhHHHHHHhCCCCCcchhhhhhh
Confidence 999999999999999999999999999987 44455554433211222221111100000 00 0
Q ss_pred CCCCCCCCceeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEecCCCccc---ceEEEEEEEEEEEEecceeEEE
Q 000815 848 GNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSV---IKYRLLRMHYNLEVLPSLNVSF 924 (1269)
Q Consensus 848 ~~~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~LfyYe~~~~~~~---~~~R~~R~~~~l~V~pSL~vs~ 924 (1269)
++.+-+.-.+.+++ ..+.+++.-+.-+.+|++-.| .-|...|.++-+... .. |=+|.-.-+.+.|+.++++
T Consensus 904 ~et~vP~fT~~sll--ip~s~s~~de~~Ipl~~~l~~---~efilrrs~eip~~D~e~fe-r~~~~p~~i~i~p~v~~~a 977 (1235)
T KOG1953|consen 904 EETNVPTFTVESLL--IPLSPSERDEIHIPLRAPLSQ---EEFILRRSVEIPEDDIEFFE-RRLRIPVSINISPRVDLKA 977 (1235)
T ss_pred hccCCCCccccccc--CCCCCCCCceEEEEeecccCc---ceeEEEeeecCcccchHHHH-HhhcCcceEEecccccchh
Confidence 00000111122333 278899999999999997432 234455555433222 11 3345556677778777777
Q ss_pred EEEeeccccceEEEEEEEEeCCCCccEEEEEEEeeecceeEeecCCCCccCCcccccccceEEEEEEEeecCC
Q 000815 925 QISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGE 997 (1269)
Q Consensus 925 ~~~~s~s~~~e~~v~v~V~N~~~~e~f~l~qvs~vS~~W~l~~l~~~~~~~~~~~~~~~q~~~~~f~~~~~~~ 997 (1269)
.-.----..+..+|.|++.|....+-+...+ -.+.. +..+.|..+.+.-+.++++..
T Consensus 978 ws~lp~ddpf~~lv~v~~~ns~~~dl~v~~~--ds~~~--------------~~~V~pk~t~RIliplk~~~~ 1034 (1235)
T KOG1953|consen 978 WSALPEDDPFYCLVLVNFYNSFSEDLFVTVK--DSSTD--------------SVLVKPKATNRILIPLKRFIM 1034 (1235)
T ss_pred cccCCCCCceEEEEEEecccccCCccceeec--cCCCc--------------eEEEcccccceEEEEeccccc
Confidence 5331111235677777777776544332222 11110 122345556666777777764
No 5
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=2.4e-19 Score=219.80 Aligned_cols=499 Identities=17% Similarity=0.119 Sum_probs=312.8
Q ss_pred hhHhhhhhcCCcE--EEEEcChhHHHHHHhcCCChhHhh-cccccCCCCCceeeCCCC------CcEEeccceEE-Eeec
Q 000815 8 PLGKMLLDEITPV--VMVLRTPLVEESCGKNGISLLQML-SPFCNFSNIDVPVRTASD------QPYRLHKFKLR-LVYE 77 (1269)
Q Consensus 8 ~~~~~i~~~fsP~--V~Vl~S~~ae~~~~~nglsf~eLL-rPF~~~~~~~v~~R~~~~------~~~~~~~f~vR-F~~~ 77 (1269)
..+.+|+..++|. +.|+++.|++++-.|+|.++.-++ +|+.......-..||..+ .....+.-.++ |+..
T Consensus 151 ~~rwfigs~y~p~~~~~ilys~ds~e~q~Rk~aD~~~~f~h~~~a~~~y~stkrd~~nd~am~~~a~alEm~sls~Fvq~ 230 (960)
T KOG1938|consen 151 TKRWFIGSTYAPDNTLGILYSFDSGEFQTRKGADLLFMFGHPNLAFDAYHSTKRDFNNDKAMVYYAGALEMRSLSAFVQP 230 (960)
T ss_pred HHHHHhcCccCCCCcceeEecccchHHhhhhccchhhhhccccchhhhhhhhhcchhhhhHHhHhhhhhhhhhhhhhcCC
Confidence 4577889999999 999999999999999998866666 666666555555555433 12223444455 5532
Q ss_pred CCCCCCChHHHHHHHHHHHhhh--ccccccccCC---CCccc-----------cccc--cCCCC-CCChHHHHHHHHHHh
Q 000815 78 SDIRHPNLEVAKEQLKQVITRT--GEKELSELGS---DPTEI-----------SDVV--GRSES-EILPSWFQLFNKELM 138 (1269)
Q Consensus 78 ~~i~~~~~~~~~~~l~~vv~~~--~~~~~~~~~~---~~~~~-----------~~~~--~~~~~-~~tP~Wf~~~~~~~l 138 (1269)
+..+ ...+.++..+..+ ..+......+ ...++ +.+. ...+. -..|...+....+|.
T Consensus 231 ~a~q-----~~sqyme~a~~~~~~i~k~~~~A~rc~l~~aei~k~~~lh~eaa~~~~r~~see~dl~~allleqaal~f~ 305 (960)
T KOG1938|consen 231 DATQ-----FPSQYMENAFPLYRLILKNYQDANRCVLNSAEILKFLGLHKEAAEALARETSEEGDLLSALLLEQAALCFG 305 (960)
T ss_pred cchh-----hHHHHHhhhhHHHHHHHhhccchhhhccCchHHHHHHHHHHHHHHHHHHhhCcCchhhhHHHHHHHHHHhh
Confidence 2211 0112222211100 0111000000 00000 0000 11122 135556777888888
Q ss_pred cccCCCCCcccccceEEEEEEeCCCCChhhHHHhhhccCCCCccccCCCCCcCCceEEEEEe-c----CCCCChHHHHHH
Q 000815 139 HTVSFSEHEAFDHPVACLLVVSSEDEQPINRFIDLFNTNKLPSLLNDGAMDPKILKHYLLVH-D----NQDGPSEKASKI 213 (1269)
Q Consensus 139 ~~~~~s~hEtf~HPva~llvvSs~~~~pie~~~~L~~~~~~P~~~~~~~~d~~il~~yvLlH-D----~~~~~~~~a~~l 213 (1269)
.+.++.+||+|.|||++++++|+.+. |.++++.+.+. +|.+-...|.-++++-||.++| + .++.+.+-+..+
T Consensus 306 ~tkp~m~~ktffHpVLal~r~s~anq-p~ha~R~y~~a--i~v~~~~~ws~~edh~~f~i~~~y~l~~~D~a~~~f~~~i 382 (960)
T KOG1938|consen 306 STKPPMPRKTFFHPVLALIRFSSANQ-PKHALRCYRQA--IPVLKKPTWSFAEDHLYFTILHVYLLCQEDDADEEFSKLI 382 (960)
T ss_pred cCCCCccchhhcceeehhhhcccCCC-hhHHHHHHHHH--hhhcCCCCcchhHHhHHHhHHHhhhhhcchhHHHHHHHHH
Confidence 99999999999999999999999999 99999999874 3333334577788888999998 3 223344556789
Q ss_pred HHHHHhhcCCCceEEEEecCCCCC------C-CcCCCCCCCCCCCCCCCCCCCcccCChhhHHHHHHHHHHHHHhhhhhH
Q 000815 214 LTEMRSTFGPNDCQLLCINSSEDG------R-IERQDNPWASHKSDASPSKHLGSFLNNDDFSEIKDVMQELASKHIIPY 286 (1269)
Q Consensus 214 l~~mK~~fG~~~c~lL~inS~~~~------~-~~~~~d~w~~~~~~~~~~~~~~~~L~~~D~~~ir~fv~e~v~~~liP~ 286 (1269)
+..||++.|.+ .+.||.-+.... + .+.+.-||....+.........| ..|-+..-.+.++++...+.|.
T Consensus 383 ~~~~kqS~~~q-~~FLRl~~~~~s~~~~~t~v~~l~~lp~l~~e~~~vi~~~~~~---~t~~e~~~at~~~~~sd~~w~~ 458 (960)
T KOG1938|consen 383 ADCMKQSKGLQ-TEFLRLYSNKDSFIYDHTPVVQLPQLPMLSMEERLVILSEPTR---STDAEALPATHQYLVSDNIWPS 458 (960)
T ss_pred hhhhhcChHHH-HHHHHHHHHHhhcccccCCccccCCcchhhhhHHHHHhcCCCC---Ccchhhhhhhhhhccccccchh
Confidence 99999999996 677776554321 1 11222344332111000011111 0122223334489999999999
Q ss_pred HHHHHHHHHHhhhcc-CcCchhhhhHhhhcCCCC----------------------CCC---------C--CCCCCCcc-
Q 000815 287 MEQKIRVLNQQVSAT-RKGFRNQLKNLWWRKGKE----------------------ETS---------D--SPNGPMYT- 331 (1269)
Q Consensus 287 mEr~I~~lne~v~~~-RKgi~~~l~~~w~r~~k~----------------------~~~---------~--~~~~~~Y~- 331 (1269)
|||++..|-....++ |+.-.......|.-+.+. .++ + ....+.|.
T Consensus 459 lEr~~s~~~~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~ 538 (960)
T KOG1938|consen 459 LERKSSHILFAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSH 538 (960)
T ss_pred HHHHHHHHHhcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhccccccccccccccc
Confidence 999999887777766 432222111111100000 000 0 00112232
Q ss_pred -CCChHH---------HHHHhhhHHHHhhCHHHHHHHHHHHhhhhcc---c--cchhhhhchHHHHHHHHHhccCChhH-
Q 000815 332 -FSSIES---------QIRILGDYAFMLRDYELALSNYRLISTDYKL---D--KAWKRYAGVQEMMGLTYFMLDQSRKE- 395 (1269)
Q Consensus 332 -~~S~E~---------q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~---D--kaw~~~A~a~EM~als~ll~~~~~~~- 395 (1269)
..+||+ +.+..||+.|||+||..|+..|+.++.+|.. | ++|.|-|.+.||.++++.++...++.
T Consensus 539 ~~~~Pe~~~~s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~~~~~~~s~ 618 (960)
T KOG1938|consen 539 SQSSPELIDDSAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNNTKLDVTSS 618 (960)
T ss_pred cccChhhhhhhhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhhhccccccc
Confidence 234554 4566999999999999999999999999998 7 99999999999999999998653211
Q ss_pred -------HHHHHHHHHHHHhhcCC--CchhhH--HHHHHHHHHHHHhcCc--hHHHHHHHHHHh--Cc--C--chhhHHH
Q 000815 396 -------AEYCMENAFTTYAKIGS--SGQQNA--TRCGLWWVEMLKARHQ--YKDAATVYFRIC--GE--E--PLHSAVM 456 (1269)
Q Consensus 396 -------~~~~le~A~~~Y~~~~~--~~~~~A--~R~~ll~~e~l~~~~~--~~eaa~~l~r~~--~e--~--~l~sAll 456 (1269)
...+...-+..|..+-- +-..|| +|++++-.+.+..... ...|+.|.-+.. .+ + .+..|.+
T Consensus 619 ~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n~s~~~~~~~~a~i 698 (960)
T KOG1938|consen 619 KLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLENESHRKGKMNAANI 698 (960)
T ss_pred ccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhcccccccccccCHhhh
Confidence 11122223333332211 112488 9999988777755544 457887763321 11 1 2456677
Q ss_pred HHHHHHhhhcC---------CCCCCchhHHHHHHHHHH---HHhCCCchHHHHHHHHHHHhhcCCCccchHHHH
Q 000815 457 LEQASYCYLLS---------KPPMLHKYGFHLVLSGDR---YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHV 518 (1269)
Q Consensus 457 lEqaA~c~l~~---------~~p~~RK~Af~~vLAg~r---y~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi 518 (1269)
--|..+-+... .+.+.||+|||+.+++.. |..+-|+..+..|...|-..|...+|-...+++
T Consensus 699 ~~~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~~~w~r~~~~r~~~~~~n~a~~~y~~i~~~~~s~~~ 772 (960)
T KOG1938|consen 699 SQQETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEASKPWLRQRQWRRASWCLNTAKSTYSKIHWLSLSECI 772 (960)
T ss_pred hhhhhhhhccccCCCcccccCCCceeeeeeeEecccccccchHHhhhhhhhhhhhhccccceeeeeeeehhhhh
Confidence 76666655442 245889999999999999 999999999999999999999999999999998
No 6
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=99.42 E-value=5.5e-09 Score=130.61 Aligned_cols=496 Identities=16% Similarity=0.186 Sum_probs=266.1
Q ss_pred cccCCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceee
Q 000815 615 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL 694 (1269)
Q Consensus 615 ~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 694 (1269)
.+......+||++.+.|.|++.+..||.|++|++..+....+-....+.. +.....+ ..+...-..
T Consensus 17 ~F~~~~~~~~~~~~~ql~i~S~~~~pi~~s~l~V~fs~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~~ 82 (554)
T PF07919_consen 17 AFSQSEGKVGEPVQFQLSIRSNAPSPIRFSSLKVNFSGSLYPIVISHSDA--------DASSADS------STSSGSPLS 82 (554)
T ss_pred EEccCCccCCCeEEEEEEEEcCCCCCEEeeEEEEEeeCCCCCceEecccc--------ccccccC------ccccccccc
Confidence 34555778999999999999999999999999999765322111111110 0000000 000001112
Q ss_pred eeeeEEEcCCceEEEEEEEEeCc---eeEEEEEEEEEEEccc---eeeeecccccchh----hhhc-ccCccccCCCC-C
Q 000815 695 SEVDISLGGAETILVQLMVTPKV---EGILKIVGVRWRLSGS---LVGVYNFESNLVK----KKIA-KGRRKVKSSPS-N 762 (1269)
Q Consensus 695 ~~~~i~L~p~Etk~v~L~~~P~~---~G~L~I~Gv~~~L~~~---v~g~~~F~~~g~r----l~~t-k~r~~~~~~pd-~ 762 (1269)
...++.|.|+++|.+.+.+.|++ .|+++|.+|...+... ......++....+ .... +..+......+ .
T Consensus 83 ~~~~L~l~p~~~kv~~~~~~~~~~~~~g~~~i~sv~L~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 162 (554)
T PF07919_consen 83 GSADLTLSPGQTKVFSFKFVPREQDVSGELEITSVTLQLGSDKFDLTLSWSFESSSSSSSFWWWQSSDGPKSRPIRKPRD 162 (554)
T ss_pred CccceEEeecceEEEEEEEeccccccCCcEEEEEEEEEEecCeEEEEEEeccccccccccccccccCCcceeeeccCCCC
Confidence 33589999999999999999999 9999999999999731 1111112100000 0000 00000011111 3
Q ss_pred ceEEEEecCCCeEEEEE-ccCCccccCCcEEEEEEEEEecCccccceEEEEec-CCceEEeCCCCCCCccchhhhhcccc
Q 000815 763 DLKFIVIKSLPKLEGLI-HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVS-HPRFLSIGNRDDMTKEFPACLQKMTN 840 (1269)
Q Consensus 763 rL~~~V~~~~P~Lev~~-~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s-~P~~~~~g~~~~~~~~~p~~l~~~~~ 840 (1269)
.-.+.|.|+-|++++.+ .+.++. |.||...+.|+|.|.+....+....... +|...........+ ...
T Consensus 163 ~~~i~I~p~pp~v~I~~~~~~~~~-l~gE~~~i~i~I~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------- 232 (554)
T PF07919_consen 163 QSSIRILPRPPKVSIKLPNHKPPA-LTGEFYPIPITISNNEDEEASGVLEVRLLHPSQLGVSSEETED--LSQ------- 232 (554)
T ss_pred CCEEEEECCCCCeEEEeCCCCCCe-EcCCEEEEEEEEEcCCCccceeEEEEEEecccccccccccCcc--cee-------
Confidence 46788999999999999 555555 9999999999999999877654333222 22221111111100 000
Q ss_pred ccccccCCCCCCCCCc-eeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEec--CCCcccceEEEEEEEEEEEEe
Q 000815 841 AEQSVAGGNFNKMPQA-VFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM--GDVSSVIKYRLLRMHYNLEVL 917 (1269)
Q Consensus 841 ~~~~~~~~~~~~~~~~-v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~LfyYe~--~~~~~~~~~R~~R~~~~l~V~ 917 (1269)
.+ .+..+.+.. ....+. +.|++|++.+.+++++...+|...|.+-++|.. .+......+. ..+..+.+.
T Consensus 233 ~~-----~~~~~~~~~~~~~~~l-g~l~~~~s~~~~l~i~~~~~~~~~L~i~~~Y~l~~~~~~~~~i~~--~~~~~l~~~ 304 (554)
T PF07919_consen 233 VN-----WDSDKDDEPLFLGIPL-GELAPGSSITVTLYIRTSRPGEYELSISVSYHLDVESDPETPISK--TKTVQLPVI 304 (554)
T ss_pred cc-----cccccccchhccCccc-ccCCCCCcEEEEEEEEeCCceeEEEEEEEEEEEecCCCCceeEEE--eEEEeeeEE
Confidence 00 000001111 111222 379999999999999988999999999999975 3322222333 233678888
Q ss_pred cceeEEEEEEe----eccc-cceEEEEEEEE----e-----------CCCCcc-EEEEEEEeeecceeEeecCCCCccCC
Q 000815 918 PSLNVSFQISP----WSSR-LQQYLVRMDVV----N-----------QTSSEN-FQIHQLSSVGHQWEISLLQPFDSIFP 976 (1269)
Q Consensus 918 pSL~vs~~~~~----s~s~-~~e~~v~v~V~----N-----------~~~~e~-f~l~qvs~vS~~W~l~~l~~~~~~~~ 976 (1269)
.+|+++..+.+ ..-. ..-+.+...-. | ....+. +...++.+.++ |.|.-
T Consensus 305 ~PF~~~y~~~~~~~~~~~~~p~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~s~a~-~~L~I--------- 374 (554)
T PF07919_consen 305 NPFEANYDFSPRFHPDPWDMPSPFDVDGSSDFQTLNPEPLTRDGILSVGLNQPWCLNSDIESFAP-EPLEI--------- 374 (554)
T ss_pred cCEEeeeeEEeeeccCCccCCcccccccccccccccccccccccccccccCCCeEEEccceecCC-CceEE---------
Confidence 99966654433 2220 00011110000 0 111122 33344555555 54432
Q ss_pred cccccccceEEEEEEEeecCCCCCCCCCCCCCCccccCceeecCC--CcccccccCCcchhhhHHHhhhhhcccCCCCcc
Q 000815 977 SESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGT--ADTLFDISGSPLADFHAHERLLQRVSQDDTNTV 1054 (1269)
Q Consensus 977 ~~~~~~~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~--~~~~~~~s~~p~~~f~~~~~~~~~~~~~~~~~~ 1054 (1269)
..+-|.+.........+ ......+---.+..+..+ .+..++.. +..+++.-..........
T Consensus 375 ---------~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~f~~~-------~~~~~~~~~~~~~~~~~g 437 (554)
T PF07919_consen 375 ---------EDISLEVLSSNGGASCD-VSSEDSSSPESGTVLQPGECREDQFCLR-------LDVQKLSLDDRRNVTLLG 437 (554)
T ss_pred ---------EEEEEEEecCCCceeee-eccccccCCCccceeCcccccccccccc-------ccccccccccCccceeEE
Confidence 11111221111100000 000000000001111100 00000000 111111111112233347
Q ss_pred eEEEEecccccCCCCCCCCCccccceeeecccccccCceEEEEecCceeeccCCCcceeEeEEEEEEcCCCccEeEEEEe
Q 000815 1055 DFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT 1134 (1269)
Q Consensus 1055 ~~i~~w~~~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l~~p~~~~h~f~~~~c~v~~~l~l~N~s~~~~~~~i~~ 1134 (1269)
.+.+.|+-...++ ++.......-+-.. .....|++-.++.|.... --.-+.++.+|.|.+.+...+.+..
T Consensus 438 ~~~I~WrR~~~~s----~~~~~~t~l~lP~~-~v~~~~~~v~~~~p~~~~-----~~~~~~l~~~I~N~T~~~~~~~~~m 507 (554)
T PF07919_consen 438 SLVIKWRRNSSNS----SDPVVTTPLPLPRV-NVPSSPLRVLASVPPSAI-----VGEPFTLSYTIENPTNHFQTFELSM 507 (554)
T ss_pred EEEEEEEECCCCC----CCceEEEEeecCce-EccCCCcEEEEecCCccc-----cCcEEEEEEEEECCCCccEEEEEEE
Confidence 8999999821111 01011111111111 345678888888765333 2345889999999999888888765
Q ss_pred cCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccccccccCCccccccCCccCcCCceEEeccccceeEecCCceeeE
Q 000815 1135 FDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDI 1214 (1269)
Q Consensus 1135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~W~g~~~~~~~l~p~~~~~~ 1214 (1269)
-. ...|+..|.-+..++|-|.+...+
T Consensus 508 e~------------------------------------------------------s~~F~fsG~k~~~~~llP~s~~~~ 533 (554)
T PF07919_consen 508 EP------------------------------------------------------SDDFMFSGPKQTTFSLLPFSRHTV 533 (554)
T ss_pred cc------------------------------------------------------CCCEEEECCCcCceEECCCCcEEE
Confidence 10 122999999999999999999999
Q ss_pred eeEEEEecCceeccCccEE
Q 000815 1215 AMKVCLFSPGTYDLSNYAL 1233 (1269)
Q Consensus 1215 ~L~~~~~~~G~y~l~~~~~ 1233 (1269)
.....-+..|..-|=+++|
T Consensus 534 ~y~l~pl~~G~~~lP~l~v 552 (554)
T PF07919_consen 534 RYNLLPLVAGWWILPRLKV 552 (554)
T ss_pred EEEEEEccCCcEECCcEEE
Confidence 9999999999998766555
No 7
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins.
Probab=98.01 E-value=0.00064 Score=76.62 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=124.8
Q ss_pred cccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCc
Q 000815 785 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 864 (1269)
Q Consensus 785 ~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~ 864 (1269)
.+|.||...+.|.+.|.+..+|+++.+++. +.-.+.. ...++.. .. ... -| ..
T Consensus 9 ~iylGEtF~~~l~~~N~s~~~v~~v~ikve----mqT~s~~-~r~~L~~---------------~~--~~~----~~-~~ 61 (249)
T PF06159_consen 9 SIYLGETFSCYLSVNNDSNKPVRNVRIKVE----MQTPSQS-LRLPLSD---------------NE--NSD----SP-VA 61 (249)
T ss_pred CEeecCCEEEEEEeecCCCCceEEeEEEEE----EeCCCCC-ccccCCC---------------Cc--ccc----cc-cc
Confidence 689999999999999999999999999886 2211110 0000100 00 000 01 13
Q ss_pred ccCCCCeEEEEEEEEecCCceeEEEEEEEEecC-C-CcccceEEEEEEEEEEEEecceeEEEEEEeeccc-----cceEE
Q 000815 865 SIQGETPLLWPLWYRAAVPGKISLSITIYYEMG-D-VSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSR-----LQQYL 937 (1269)
Q Consensus 865 ~L~pGes~~~plwlra~~~G~~~l~~LfyYe~~-~-~~~~~~~R~~R~~~~l~V~pSL~vs~~~~~s~s~-----~~e~~ 937 (1269)
.|.||++++.-+=..=-..|.|.|.+.+.|... + .+. -|+.|-.+.+.|.++|+|...+...... ...+.
T Consensus 62 ~L~p~~~l~~iv~~~lkE~G~h~L~c~VsY~~~~~~~g~---~~tfRK~ykF~v~~PL~VktK~~~~~~~~~~~~~~~~~ 138 (249)
T PF06159_consen 62 SLAPGESLDFIVSHELKELGNHTLVCTVSYTDPTETSGE---RRTFRKFYKFQVLNPLSVKTKVYNLEDDSSLSPRERVF 138 (249)
T ss_pred ccCCCCeEeEEEEEEeeecCceEEEEEEEEecCcccCCc---cceEeeeeEEeCCCCcEEEEEEEecCCccccccceeEE
Confidence 699999977766555557999999999955443 1 122 2667888999999999999998777642 23789
Q ss_pred EEEEEEeCCCCccEEEEEEEee-ecceeEeecCCCCcc---C---------CcccccccceEEEEEEEeecCC
Q 000815 938 VRMDVVNQTSSENFQIHQLSSV-GHQWEISLLQPFDSI---F---------PSESLFAGQALSCFFMLKNRGE 997 (1269)
Q Consensus 938 v~v~V~N~~~~e~f~l~qvs~v-S~~W~l~~l~~~~~~---~---------~~~~~~~~q~~~~~f~~~~~~~ 997 (1269)
|.+.|+|.+ ..++.|..|..- ++.|+...+...... . ....|.|+..-...|++++...
T Consensus 139 LEaqlqN~s-~~pl~Le~v~lep~~~~~~~~ln~~~~~~~~~~~~~~~~~~~~~~L~P~d~~qylF~l~~~~~ 210 (249)
T PF06159_consen 139 LEAQLQNIS-SGPLFLEKVKLEPSPGFKVTDLNWEPSGESSDGEFGGISSGSRPYLQPGDVRQYLFCLTPKPE 210 (249)
T ss_pred EEEEEEecC-CCceEEEEEEeecCCCceeEecccccccccccccccccccCCcceeCCCCEEEEEEEEEECCc
Confidence 999999999 555888887764 456877766521111 0 1235799998888999988765
No 8
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.75 E-value=0.00058 Score=78.44 Aligned_cols=151 Identities=24% Similarity=0.290 Sum_probs=104.7
Q ss_pred hCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH
Q 000815 350 RDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEML 429 (1269)
Q Consensus 350 ~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l 429 (1269)
.||+.|...|+.+-+-|+..+.|...+-|.+-+|-+..-. .........+++|...|.+.. +.-|+++.--..+++
T Consensus 29 ~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~-~~~~~Aa~~~~~Aa~~~k~~~---~~~Ai~~~~~A~~~y 104 (282)
T PF14938_consen 29 PDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL-GDKFEAAKAYEEAANCYKKGD---PDEAIECYEKAIEIY 104 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888887777666542 223333444555555555441 234455554445555
Q ss_pred HhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhC-CCchHHHHHHHHHHHhhcC
Q 000815 430 KARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKC-DQINHAIRTYRSAVSVYKG 508 (1269)
Q Consensus 430 ~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~ka-gq~~~AlrCy~~a~~vY~~ 508 (1269)
...|.+. .+|-.+.-+|..|.+. |....|+.+|.+|..+|+.
T Consensus 105 ~~~G~~~-------------------------------------~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 105 REAGRFS-------------------------------------QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHCT-HH-------------------------------------HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HhcCcHH-------------------------------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 5444444 4444455556677777 8899999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 509 STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 509 ~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.+-..-...+...++..+..+|++++|+..+-+
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~ 180 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEE 180 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 998888888889999999999999999988865
No 9
>COG1470 Predicted membrane protein [Function unknown]
Probab=97.11 E-value=0.035 Score=65.99 Aligned_cols=177 Identities=16% Similarity=0.144 Sum_probs=107.5
Q ss_pred CccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceee---e
Q 000815 619 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTL---S 695 (1269)
Q Consensus 619 ~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~---~ 695 (1269)
.....++.+.+.|.+.|--+.+.+. .|...+-+++..- .|+. .
T Consensus 278 ~~i~~~~t~sf~V~IeN~g~~~d~y---~Le~~g~pe~w~~-------------------------------~Fteg~~~ 323 (513)
T COG1470 278 LEISPSTTASFTVSIENRGKQDDEY---ALELSGLPEGWTA-------------------------------EFTEGELR 323 (513)
T ss_pred eEEccCCceEEEEEEccCCCCCcee---EEEeccCCCCcce-------------------------------EEeeCceE
Confidence 3445678888888888887776543 4444433332210 1221 1
Q ss_pred eeeEEEcCCceEEEEEEEEeCce---eEEEEEEEEEEEccceeeeecccccchhhhhcccCccccCCCCCceEEEEecCC
Q 000815 696 EVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSL 772 (1269)
Q Consensus 696 ~~~i~L~p~Etk~v~L~~~P~~~---G~L~I~Gv~~~L~~~v~g~~~F~~~g~rl~~tk~r~~~~~~pd~rL~~~V~~~~ 772 (1269)
..++.|.|+|+|.+.|++.|... |...+.=.+-.=+ .+.- ...++++++..+
T Consensus 324 vt~vkL~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s~s-~v~~------------------------e~~lki~~~g~~ 378 (513)
T COG1470 324 VTSVKLKPGEEKDVTLEVYPSLNATPGTYNVTITASSSS-GVTR------------------------ELPLKIKNTGSY 378 (513)
T ss_pred EEEEEecCCCceEEEEEEecCCCCCCCceeEEEEEeccc-ccee------------------------eeeEEEEecccc
Confidence 24799999999999999999975 6655431110000 0000 011333333333
Q ss_pred CeEEEEEccCC--ccccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCC
Q 000815 773 PKLEGLIHPLP--ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNF 850 (1269)
Q Consensus 773 P~Lev~~~~~P--~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~ 850 (1269)
-.. +.+..-| ..+-.||-..+.+.+.|.|++|++||.+.+..|.- .+. .+
T Consensus 379 ~~~-v~l~~g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~Pqg-----Wei-----------------~V----- 430 (513)
T COG1470 379 NEL-VKLDNGPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQG-----WEI-----------------EV----- 430 (513)
T ss_pred cee-EEccCCcEEEEecCCccceEEEEEEecCCCccceeeEEecCCcc-----ceE-----------------EE-----
Confidence 222 3333323 25688999999999999999999999999998722 110 00
Q ss_pred CCCCCceeccCCCcccCCCCeEEEEEEEEecC---CceeEEEE
Q 000815 851 NKMPQAVFSFPEGISIQGETPLLWPLWYRAAV---PGKISLSI 890 (1269)
Q Consensus 851 ~~~~~~v~~~p~~~~L~pGes~~~plwlra~~---~G~~~l~~ 890 (1269)
+..+ +| .|+||+..++++.+|+|. .|+..+.+
T Consensus 431 ---d~~~--I~---sL~pge~~tV~ltI~vP~~a~aGdY~i~i 465 (513)
T COG1470 431 ---DEST--IP---SLEPGESKTVSLTITVPEDAGAGDYRITI 465 (513)
T ss_pred ---Cccc--cc---ccCCCCcceEEEEEEcCCCCCCCcEEEEE
Confidence 0112 33 689999999999999994 45444444
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.37 E-value=0.2 Score=61.95 Aligned_cols=191 Identities=13% Similarity=0.065 Sum_probs=123.3
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhcccc--chhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcC
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDK--AWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIG 411 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dk--aw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~ 411 (1269)
..-.-.|.||+.++--|+|+.|...++.+-++-..-+ -...+|+++..+|..+.-++ .-.++.++++.|+..+..+.
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~ 275 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREEVF 275 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhc
Confidence 3344678899999999999999999998887743111 12345555554444444322 12467789999999998765
Q ss_pred CCchhhHHHHHH-HHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCC
Q 000815 412 SSGQQNATRCGL-WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCD 490 (1269)
Q Consensus 412 ~~~~~~A~R~~l-l~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kag 490 (1269)
..+ .-+.=.++ -.+.++-..|+++||...+-|+.. +.|+ .+. ...-+-+-.+...|..+...+
T Consensus 276 G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~--------I~~~---~~~----~~~~~v~~~l~~~~~~~~~~~ 339 (508)
T KOG1840|consen 276 GED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALE--------IYEK---LLG----ASHPEVAAQLSELAAILQSMN 339 (508)
T ss_pred CCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHH--------HHHH---hhc----cChHHHHHHHHHHHHHHHHhc
Confidence 432 12222222 236677788999999877765542 0011 000 011122222444455666667
Q ss_pred CchHHHHHHHHHHHhhcCC-C-ccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 491 QINHAIRTYRSAVSVYKGS-T-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 491 q~~~AlrCy~~a~~vY~~~-~-W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
....|..-|+.++.+|... + -.....++.-.||+.++++|++++|...+-+
T Consensus 340 ~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 340 EYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred chhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 7888999999999999832 2 2236678999999999999999999876655
No 11
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.36 E-value=0.095 Score=60.31 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=124.9
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCch
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
=....+.|..+=+.++|+.|...|..+..=+..-+.....|.+.+-++.++-.. ...++..+++.|+..|...+..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~--~~~~Ai~~~~~A~~~y~~~G~~-- 110 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG--DPDEAIECYEKAIEIYREAGRF-- 110 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHCT-H--
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHHHHHhcCcH--
Confidence 347788999999999999999999988877765555667788888888777654 4456778999999999998753
Q ss_pred hhHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchH
Q 000815 416 QNATRCGLWWVEMLKAR-HQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINH 494 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~-~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~ 494 (1269)
..|.++..-.++++... |.+++|...+-++. ..|-... ..+.++-.+.-+|.-+.+.|+...
T Consensus 111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~---------------~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAA---------------ELYEQEG--SPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHH---------------HHHHHTT---HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------HHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHH
Confidence 78999999999999988 89998876655543 3332211 223333345556677788888999
Q ss_pred HHHHHHHHHHhhcCC---CccchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 000815 495 AIRTYRSAVSVYKGS---TWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 540 (1269)
Q Consensus 495 AlrCy~~a~~vY~~~---~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll 540 (1269)
|+.+|..+...+... .|. +.++ .+..+-+....|+...|-+.+-
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~-~~~~-~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYS-AKEY-FLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHH-HHHH-HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccchh-HHHH-HHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888876543 332 3333 3344456666788877755553
No 12
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.11 Score=57.10 Aligned_cols=92 Identities=22% Similarity=0.238 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 000815 351 DYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLK 430 (1269)
Q Consensus 351 DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~ 430 (1269)
.|+.|...|..+.+-|+--|.|-...-|..=+|=+++= .+++-+.....-.|.+.|-+.. +..|.+|+-...+|+.
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k-~~skhDaat~YveA~~cykk~~---~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLK-AGSKHDAATTYVEAANCYKKVD---PEEAVNCLEKAIEIYT 104 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh-cCCchhHHHHHHHHHHHhhccC---hHHHHHHHHHHHHHHH
Confidence 47778888888888888888887666666655555543 4466665444446889998874 3899999999999999
Q ss_pred hcCchHHHHHHHHHHh
Q 000815 431 ARHQYKDAATVYFRIC 446 (1269)
Q Consensus 431 ~~~~~~eaa~~l~r~~ 446 (1269)
-+|.+.-||+.-+.+.
T Consensus 105 ~~Grf~~aAk~~~~ia 120 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIA 120 (288)
T ss_pred hhhHHHHHHhhhhhHH
Confidence 9999999998877664
No 13
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=95.92 E-value=0.027 Score=63.59 Aligned_cols=88 Identities=16% Similarity=0.178 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCC
Q 000815 452 HSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGM 531 (1269)
Q Consensus 452 ~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~ 531 (1269)
...-+|+.|-..|...+. .|....-.+.-|..|.+.|+...|+.+|..+...|+..||..+...+...|.++++.+|+
T Consensus 156 ~iI~lL~~A~~~f~~~~~--~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~ 233 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQ--NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGD 233 (247)
T ss_pred HHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCC
Confidence 345677788887775544 566666688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 000815 532 HDIAVAHMLE 541 (1269)
Q Consensus 532 ~~~Av~hll~ 541 (1269)
.+.++...++
T Consensus 234 ~~~~l~~~le 243 (247)
T PF11817_consen 234 VEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.80 E-value=0.25 Score=67.92 Aligned_cols=190 Identities=16% Similarity=0.160 Sum_probs=115.7
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccc---cchhhhhchHHHH-----HHHHHhccCChhHHHHHHHHHHH
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLD---KAWKRYAGVQEMM-----GLTYFMLDQSRKEAEYCMENAFT 405 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~D---kaw~~~A~a~EM~-----als~ll~~~~~~~~~~~le~A~~ 405 (1269)
.++. ...||..++..|||+.|...|+.+.+-...+ ..|.-+.....+. |..++- .....++..+++.|+.
T Consensus 302 ~~~a-~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~-~g~~~eA~~~~~~Al~ 379 (1157)
T PRK11447 302 DSEA-LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALK-ANNLAQAERLYQQARQ 379 (1157)
T ss_pred CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3444 5679999999999999999999877644332 2343222221111 111111 1122334445555544
Q ss_pred HHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHHHHHHHHhhhcC-----------CCCCCc
Q 000815 406 TYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLS-----------KPPMLH 473 (1269)
Q Consensus 406 ~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAlllEqaA~c~l~~-----------~~p~~R 473 (1269)
.. +. .. .+.+..+.++...|.+++|...+-+++..++ -..| +...+.+|... -++..+
T Consensus 380 ~~----P~-~~---~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a--~~~L~~l~~~~~~~~A~~~l~~l~~~~~ 449 (1157)
T PRK11447 380 VD----NT-DS---YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNA--VRGLANLYRQQSPEKALAFIASLSASQR 449 (1157)
T ss_pred hC----CC-CH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH--HHHHHHHHHhcCHHHHHHHHHhCCHHHH
Confidence 32 11 11 2334457888889999999999888775443 1111 22233333221 111111
Q ss_pred hh---------HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 474 KY---------GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 474 K~---------Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+. ...+..-|..|.+.|+...|+.+|.+++.......| +++.||+.+..+|+.++|++.+-+
T Consensus 450 ~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~------~~~~LA~~~~~~G~~~~A~~~l~~ 520 (1157)
T PRK11447 450 RSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVW------LTYRLAQDLRQAGQRSQADALMRR 520 (1157)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 10 011233567788999999999999999999987766 678999999999999999877655
No 15
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=95.76 E-value=0.9 Score=56.36 Aligned_cols=199 Identities=19% Similarity=0.172 Sum_probs=132.0
Q ss_pred HHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchh--hhhchHHHHHHHHHhccCCh-hHHHHHHHHHHHHHhhcC-CCc
Q 000815 339 IRILGDYAFMLRDYELALSNYRLISTDYKLDKAWK--RYAGVQEMMGLTYFMLDQSR-KEAEYCMENAFTTYAKIG-SSG 414 (1269)
Q Consensus 339 ~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~--~~A~a~EM~als~ll~~~~~-~~~~~~le~A~~~Y~~~~-~~~ 414 (1269)
+-.+|+++.-++.|+.|.-+|+-+-..+..-.=-. .+|.+++=.|+++ ..+.+ .++..|+++|+..|.+.- .+.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly--~~~GKf~EA~~~~e~Al~I~~~~~~~~~ 321 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLY--YKQGKFAEAEEYCERALEIYEKLLGASH 321 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH--hccCChHHHHHHHHHHHHHHHHhhccCh
Confidence 33689999999999999999997776666322222 3444444444444 34443 678899999999998731 111
Q ss_pred hhhHHHHHHHHHHHHHhcCchHHHHHHHHHH-------hCcCchhhHHHHHHHHHhhhcCCCC-----CCchh-------
Q 000815 415 QQNATRCGLWWVEMLKARHQYKDAATVYFRI-------CGEEPLHSAVMLEQASYCYLLSKPP-----MLHKY------- 475 (1269)
Q Consensus 415 ~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~-------~~e~~l~sAlllEqaA~c~l~~~~p-----~~RK~------- 475 (1269)
...+..- .-.+-++.+.+.+++|..++-+. .+++...-|=+-.+.|-+|+.+.+- +.+|+
T Consensus 322 ~~v~~~l-~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 322 PEVAAQL-SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred HHHHHHH-HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 1222222 22234556788899887766433 3455566778888999999887541 11111
Q ss_pred --------HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccc-hHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 000815 476 --------GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH-IKDHVHFHIGQWYAVLGMHDIAVAHML 540 (1269)
Q Consensus 476 --------Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~-i~dhi~~~Lgr~~~~Lg~~~~Av~hll 540 (1269)
+.++-.-|..|.+.+.+..|.+.|..+..+++..|=.+ =-...+..|+..|..+|+++.|++..-
T Consensus 401 ~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~ 474 (508)
T KOG1840|consen 401 LGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE 474 (508)
T ss_pred ccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 34455556677999999999999999999996554222 233456789999999999999986543
No 16
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.48 E-value=0.15 Score=56.46 Aligned_cols=131 Identities=18% Similarity=0.168 Sum_probs=86.7
Q ss_pred hhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHH
Q 000815 349 LRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVE 427 (1269)
Q Consensus 349 l~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~-~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e 427 (1269)
-.+|+.|-....-+.+-|.+.++|.|.|=+.|-+|. ++..-+ -.|+..++|.|+.-|..++.+.
T Consensus 44 Ak~feKakdcLlkA~~~yEnnrslfhAAKayEqaam--Lake~~klsEvvdl~eKAs~lY~E~Gspd------------- 108 (308)
T KOG1585|consen 44 AKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAM--LAKELSKLSEVVDLYEKASELYVECGSPD------------- 108 (308)
T ss_pred hccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHhCCcc-------------
Confidence 345555555555555666677777777777774432 222111 1356667777777777776441
Q ss_pred HHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 428 MLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 428 ~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.+|+-||+||-. .+.-.+..|+..|.+++.|++
T Consensus 109 ------------------------tAAmaleKAak~-----------------------lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 109 ------------------------TAAMALEKAAKA-----------------------LENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred ------------------------hHHHHHHHHHHH-----------------------hhcCCHHHHHHHHHHHHHHHh
Confidence 245666777753 233456789999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 508 GSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 508 ~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..+=....--+...++|.+..+..+++|-..+++
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 8887777777777888888888899888777766
No 17
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.40 E-value=0.034 Score=63.53 Aligned_cols=167 Identities=22% Similarity=0.302 Sum_probs=55.7
Q ss_pred HHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchh
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
.-.|.+||++-.++||+.|...|+.+.. .+++ ....+..+..++......++..+++. .|.+...+
T Consensus 45 ~~~~~~a~La~~~~~~~~A~~ay~~l~~---~~~~-----~~~~~~~l~~l~~~~~~~~A~~~~~~---~~~~~~~~--- 110 (280)
T PF13429_consen 45 EYWRLLADLAWSLGDYDEAIEAYEKLLA---SDKA-----NPQDYERLIQLLQDGDPEEALKLAEK---AYERDGDP--- 110 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc---cccc-----cccccccccccccccccccccccccc---cccccccc---
Confidence 4557788888888888888888887654 3343 12222223333222222222233333 34333211
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHH
Q 000815 417 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 496 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~Al 496 (1269)
+.....++++...+.++++...+-++... + .....+..++..|.-|.+.|+...|+
T Consensus 111 ---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~--------------------~-~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 111 ---RYLLSALQLYYRLGDYDEAEELLEKLEEL--------------------P-AAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH---------------------T----T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ---chhhHHHHHHHHHhHHHHHHHHHHHHHhc--------------------c-CCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 22333445566667777766555443211 1 11234444666777888899999999
Q ss_pred HHHHHHHHhhcCC-------CccchH---------------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 497 RTYRSAVSVYKGS-------TWSHIK---------------------DHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 497 rCy~~a~~vY~~~-------~W~~i~---------------------dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+||++|+....+. .|.+++ .-+...+|..+..+|+.+.|+.++.+
T Consensus 167 ~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~ 239 (280)
T PF13429_consen 167 RDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK 239 (280)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence 9999999888752 232221 11334667777888888888877765
No 18
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=95.06 E-value=1.1 Score=58.40 Aligned_cols=182 Identities=17% Similarity=0.131 Sum_probs=87.9
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
+.++... .||..++..|||+.|...|+.+.+.... .. .+.-..|-+++.++. .+.|+..+.....
T Consensus 54 ~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-----~~~~~~a~~~~~~g~--------~~~a~~~~~~~~~ 118 (899)
T TIGR02917 54 NDAEARF-LLGKIYLALGDYAAAEKELRKALSLGYP-KN-----QVLPLLARAYLLQGK--------FQQVLDELPGKTL 118 (899)
T ss_pred CCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCC-hh-----hhHHHHHHHHHHCCC--------HHHHHHhhccccc
Confidence 4566544 5899999999999999999977653221 11 111222333333321 2233333322211
Q ss_pred CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCC---------------CCCCchhHH
Q 000815 413 SGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSK---------------PPMLHKYGF 477 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~---------------~p~~RK~Af 477 (1269)
.......+.....+.++...|.+++|..++-++...++-... .+-..|.++.... .|... -
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---~ 194 (899)
T TIGR02917 119 LDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY-AKLGLAQLALAENRFDEARALIDEVLTADPGNV---D 194 (899)
T ss_pred CCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh-hHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh---H
Confidence 111233344444555555566666666666655543321000 1111222222211 11111 1
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 000815 478 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 539 (1269)
Q Consensus 478 ~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hl 539 (1269)
-..+.|+-+.+.|....|+.+|.+++....+. ..+.+.++..+...|+++.|...+
T Consensus 195 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~ 250 (899)
T TIGR02917 195 ALLLKGDLLLSLGNIELALAAYRKAIALRPNN------PAVLLALATILIEAGEFEEAEKHA 250 (899)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence 12334566666777777777777776653321 234445555555555555554433
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.99 E-value=1.1 Score=53.29 Aligned_cols=192 Identities=14% Similarity=0.047 Sum_probs=99.5
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
+.++. ...||.+++..|+|+.|...|+.+.+.-..+.. ..+.+..+.|.+++-++. ...+..+++.+... .
T Consensus 67 ~~~~~-~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~--~~~~~~~~La~~~~~~g~-~~~A~~~~~~~l~~----~- 137 (389)
T PRK11788 67 ETVEL-HLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE--QRLLALQELGQDYLKAGL-LDRAEELFLQLVDE----G- 137 (389)
T ss_pred ccHHH-HHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcC----C-
Confidence 34444 456899999999999999999977763221111 122234444555443331 22233344433221 1
Q ss_pred CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc--h--hhHHHHHHHHHhhhcCCCC------------CCchhH
Q 000815 413 SGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP--L--HSAVMLEQASYCYLLSKPP------------MLHKYG 476 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~--l--~sAlllEqaA~c~l~~~~p------------~~RK~A 476 (1269)
....++....+.++...|.+++|...+-++...++ . ..+.++=..|.+|+..... ......
T Consensus 138 ---~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 214 (389)
T PRK11788 138 ---DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV 214 (389)
T ss_pred ---cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH
Confidence 12233344455677778999998877766553321 1 1111111122222221110 011122
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 477 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 477 f~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-..+-|.-|.+.|+...|+..|..++..... -...+...|+..+..+|+++.|++.+.+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPE-----YLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 22344566677777777777777777654211 1123345667777777777777766544
No 20
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=94.85 E-value=3 Score=46.02 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=108.1
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
..=.+|-.++-.|+|+.|...|+.+.+.+..+. | ..-+.-..|.+++-++ ...++...++.++..+-+.... ...
T Consensus 35 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~-~--~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~-~~a 109 (235)
T TIGR03302 35 ELYEEAKEALDSGDYTEAIKYFEALESRYPFSP-Y--AEQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDA-DYA 109 (235)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-h--HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCch-HHH
Confidence 445667778899999999999999988776442 1 1122333445555432 1223344444444333221100 001
Q ss_pred HHHHHHHHHHH----HHhcCchHHHHHHHHHHhCcCc--hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCC
Q 000815 418 ATRCGLWWVEM----LKARHQYKDAATVYFRICGEEP--LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQ 491 (1269)
Q Consensus 418 A~R~~ll~~e~----l~~~~~~~eaa~~l~r~~~e~~--l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq 491 (1269)
-...+....+. ....|.+++|...+-++....+ ....-.+-+++..+. ..+-+...-|..|.+.|+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~--------~~~~~~~~~a~~~~~~g~ 181 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRN--------RLAGKELYVARFYLKRGA 181 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHcCC
Confidence 12222222221 1122567778777777665432 222222222222111 011112244567999999
Q ss_pred chHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 492 INHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 492 ~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
...|+.-|..++..|.+..| ..-.++.+|+.+..+|+.++|+.++..
T Consensus 182 ~~~A~~~~~~al~~~p~~~~---~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 182 YVAAINRFETVVENYPDTPA---TEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred hHHHHHHHHHHHHHCCCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999987533 345678999999999999999986643
No 21
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=94.73 E-value=0.94 Score=57.96 Aligned_cols=58 Identities=12% Similarity=-0.026 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 478 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 478 ~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
++-.|+-.|...|....|+.+|..|+...... ...+..||+.+..+|++++|++.|-+
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~------~~a~~~la~~~~~~g~~~eAi~~~e~ 567 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPEC------DIAVATMAQLLLQQGDVDEALKLFER 567 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34445555666688888999998888875322 23567899999999999999988755
No 22
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=94.70 E-value=2.5 Score=45.03 Aligned_cols=180 Identities=17% Similarity=0.025 Sum_probs=94.7
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
..-.+|..++..|+|+.|...|+.+.+....+ +.+.-..|..++.++ ...++..+++.|+...- ..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~~----~~--- 98 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPDD------YLAYLALALYYQQLG-ELEKAEDSFRRALTLNP----NN--- 98 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC----CC---
Confidence 45568999999999999999999776543221 223333444444433 22334445555544321 11
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHHHHHHHHhhhcCCCC------------CCchhHHHHHHHHH
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPP------------MLHKYGFHLVLSGD 484 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAlllEqaA~c~l~~~~p------------~~RK~Af~~vLAg~ 484 (1269)
.......+.++...|.+++|...+-++..... -.....+...|.||...... ........+..-|.
T Consensus 99 -~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~ 177 (234)
T TIGR02521 99 -GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAE 177 (234)
T ss_pred -HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHH
Confidence 12333445666778899999888877654211 11111122223333322110 00001112334456
Q ss_pred HHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHH
Q 000815 485 RYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 538 (1269)
Q Consensus 485 ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~h 538 (1269)
-|.+.|+...|..++..+...+.. .......+++.+...|+.+.|...
T Consensus 178 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 178 LYYLRGQYKDARAYLERYQQTYNQ------TAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhhHHHHHHH
Confidence 666677777777777777766321 223334566666667777766543
No 23
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=94.63 E-value=0.87 Score=59.32 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=32.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHH
Q 000815 483 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHM 539 (1269)
Q Consensus 483 g~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hl 539 (1269)
|.-|...|+...|+.+|++|+..-.. ...+.+.++..+...|+.++|++.+
T Consensus 844 ~~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~ 894 (899)
T TIGR02917 844 GWLLVEKGEADRALPLLRKAVNIAPE------AAAIRYHLALALLATGRKAEARKEL 894 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44456667777777777777765543 2345566677777777777776544
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=94.62 E-value=1.4 Score=52.33 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=104.4
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccC-ChhHHHHHHHHHHHHHhhcCCCchh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQ-SRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~-~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
-...||.++...|+|+.|...|+.+.+....+ .+...+.. .+.++..+... ...++..+++.++...-
T Consensus 143 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~--~~~la~~~~~~~~~~~A~~~~~~al~~~p-------- 211 (389)
T PRK11788 143 ALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIAHF--YCELAQQALARGDLDAARALLKKALAADP-------- 211 (389)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHhHCc--------
Confidence 45678999999999999999999887644322 11111111 22233222222 22345556666554321
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHH
Q 000815 417 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 496 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~Al 496 (1269)
...++.+..+.++...|.+++|..++-++...++-.... .+...+.-|.+.|+...|+
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~----------------------~~~~l~~~~~~~g~~~~A~ 269 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE----------------------VLPKLMECYQALGDEAEGL 269 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH----------------------HHHHHHHHHHHcCCHHHHH
Confidence 113455566788888999999988887776433211111 1123355678889999999
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 497 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 497 rCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.++..+....... .+...+++.+...|+++.|++.+.+
T Consensus 270 ~~l~~~~~~~p~~-------~~~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 270 EFLRRALEEYPGA-------DLLLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred HHHHHHHHhCCCc-------hHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999998886432 2347889999999999999988865
No 25
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=94.13 E-value=0.16 Score=46.89 Aligned_cols=74 Identities=18% Similarity=0.348 Sum_probs=47.3
Q ss_pred cCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCccc
Q 000815 787 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 866 (1269)
Q Consensus 787 l~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L 866 (1269)
-.||...++++++|.|..++.++.+.++.|+-...... +.. ++ .|
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-----------------------------~~~---~~---~l 46 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-----------------------------PAS---VP---SL 46 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-----------------------------EEE---E-----B
T ss_pred CCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-----------------------------ccc---cc---cC
Confidence 36999999999999999999999999987643220000 001 11 68
Q ss_pred CCCCeEEEEEEEEecC---CceeEEEEEEEEe
Q 000815 867 QGETPLLWPLWYRAAV---PGKISLSITIYYE 895 (1269)
Q Consensus 867 ~pGes~~~plwlra~~---~G~~~l~~LfyYe 895 (1269)
.||++.++.+-|+.|. +|...|.+...|.
T Consensus 47 ~pG~s~~~~~~V~vp~~a~~G~y~v~~~a~y~ 78 (78)
T PF10633_consen 47 PPGESVTVTFTVTVPADAAPGTYTVTVTARYT 78 (78)
T ss_dssp -TTSEEEEEEEEEE-TT--SEEEEEEEEEE--
T ss_pred CCCCEEEEEEEEECCCCCCCceEEEEEEEEeC
Confidence 9999999999999983 7999999988773
No 26
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=94.03 E-value=0.36 Score=47.18 Aligned_cols=75 Identities=21% Similarity=0.336 Sum_probs=48.1
Q ss_pred ccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeE
Q 000815 620 ICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI 699 (1269)
Q Consensus 620 ~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i 699 (1269)
..++|+++.|.|.++||+..+|.==++.|.+.-..-++ .. . ..+......+
T Consensus 10 ~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~ytG-------~~----------~------------~~~~~~~~~~ 60 (107)
T PF00927_consen 10 DPVVGQDFTVSVSFTNPSSEPLRNVSLNLCAFTVEYTG-------LT----------R------------DQFKKEKFEV 60 (107)
T ss_dssp EEBTTSEEEEEEEEEE-SSS-EECEEEEEEEEEEECTT-------TE----------E------------EEEEEEEEEE
T ss_pred CccCCCCEEEEEEEEeCCcCccccceeEEEEEEEEECC-------cc----------c------------ccEeEEEcce
Confidence 45699999999999999999866544444433221101 00 0 0123344579
Q ss_pred EEcCCceEEEEEEEEeCceeEEEE
Q 000815 700 SLGGAETILVQLMVTPKVEGILKI 723 (1269)
Q Consensus 700 ~L~p~Etk~v~L~~~P~~~G~L~I 723 (1269)
.|.|++++.+.+.++|...|.-++
T Consensus 61 ~l~p~~~~~~~~~i~p~~yG~~~~ 84 (107)
T PF00927_consen 61 TLKPGETKSVEVTITPSQYGPKQL 84 (107)
T ss_dssp EE-TTEEEEEEEEE-HHSHEEECC
T ss_pred eeCCCCEEEEEEEEEceeEecchh
Confidence 999999999999999999998443
No 27
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=94.02 E-value=0.29 Score=46.47 Aligned_cols=85 Identities=14% Similarity=0.244 Sum_probs=58.0
Q ss_pred CeEEEEEccCCccccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCC
Q 000815 773 PKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 852 (1269)
Q Consensus 773 P~Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 852 (1269)
|-|.|.....|..+..|+..+++++++|.|..+..++.+.+- .++... ..
T Consensus 2 pDL~v~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~------~~~~~~--------------~~---------- 51 (101)
T PF07705_consen 2 PDLTVSITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLY------LDGNSV--------------ST---------- 51 (101)
T ss_dssp --EEE-EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEE------ETTEEE--------------EE----------
T ss_pred CCEEEEEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEE------ECCcee--------------cc----------
Confidence 677787777788899999999999999999999988888742 111110 00
Q ss_pred CCCceeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEe
Q 000815 853 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYE 895 (1269)
Q Consensus 853 ~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~LfyYe 895 (1269)
.. + ..|.||++.++.+-+..+..|.+.+.+.+-++
T Consensus 52 --~~---i---~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~~ 86 (101)
T PF07705_consen 52 --VT---I---PSLAPGESETVTFTWTPPSPGSYTIRVVIDPD 86 (101)
T ss_dssp --EE---E---SEB-TTEEEEEEEEEE-SS-CEEEEEEEESTT
T ss_pred --EE---E---CCcCCCcEEEEEEEEEeCCCCeEEEEEEEeeC
Confidence 01 1 27899999999999999999999998888553
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.53 E-value=2.8 Score=54.15 Aligned_cols=53 Identities=13% Similarity=0.099 Sum_probs=31.4
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 483 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 483 g~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|.-+.+.|+...|+.+|++++...... ..++..||+.+..+|++++|+.++.+
T Consensus 291 g~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 291 ADALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556666667777777777766664431 23344566666666666666655543
No 29
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=93.35 E-value=2 Score=55.06 Aligned_cols=174 Identities=12% Similarity=0.012 Sum_probs=106.5
Q ss_pred hhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 000815 349 LRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEM 428 (1269)
Q Consensus 349 l~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~ 428 (1269)
.++|+.|...|+.+.+-.. .....|.+..+.|.+++.++. ..++..+++.|+...- .+ ..+-+..+.+
T Consensus 307 ~~~y~~A~~~~~~al~~~~---~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~kal~l~P-------~~-~~~~~~la~~ 374 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGK---LGEKEAIALNLRGTFKCLKGK-HLEALADLSKSIELDP-------RV-TQSYIKRASM 374 (615)
T ss_pred hhhHHHHHHHHHHHHhcCC---CChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCC-------Cc-HHHHHHHHHH
Confidence 3689999999997665221 122456667888888876552 2234445555543321 11 1223334556
Q ss_pred HHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCC------------CCCchhHHHHHHHHHHHHhCCCchHHH
Q 000815 429 LKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKP------------PMLHKYGFHLVLSGDRYKKCDQINHAI 496 (1269)
Q Consensus 429 l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~------------p~~RK~Af~~vLAg~ry~kagq~~~Al 496 (1269)
+...|.+++|...+-+++..++-. +-++...|.+|..... ....+..+....-|.-|.+.|+...|+
T Consensus 375 ~~~~g~~~eA~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 375 NLELGDPDKAEEDFDKALKLNSED-PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHH
Confidence 667889999888877766544311 1122233333333211 011223344555677888899999999
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 497 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 497 rCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..|..++..+... ..++..+|..+..+|++++|++.+-.
T Consensus 454 ~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 454 ATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred HHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999887643 33567789999999999999988766
No 30
>KOG2625 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.24 Score=53.39 Aligned_cols=314 Identities=16% Similarity=0.231 Sum_probs=161.3
Q ss_pred cccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCc
Q 000815 785 RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGI 864 (1269)
Q Consensus 785 ~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~ 864 (1269)
.+|.||...+.|.+.|-++..+++|-++..-. .+.....+|.+.... .
T Consensus 10 niflgetfs~yinv~nds~k~v~~i~lk~dlq-------tssqrl~l~~s~~~~-------------------------a 57 (348)
T KOG2625|consen 10 NIFLGETFSFYINVHNDSEKTVKDILLKADLQ-------TSSQRLNLPASNAAA-------------------------A 57 (348)
T ss_pred ceeeccceEEEEEEecchhhhhhhheeeeccc-------ccceeeccccchhhh-------------------------h
Confidence 47999999999999999999999999887621 011001111111000 0
Q ss_pred ccCCCCeEEEEEEEEec-CCceeEEEEEEEEecCCCcccceEEEEEEEEEEEEecceeEEEEEEeecccc----ceEEEE
Q 000815 865 SIQGETPLLWPLWYRAA-VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRL----QQYLVR 939 (1269)
Q Consensus 865 ~L~pGes~~~plwlra~-~~G~~~l~~LfyYe~~~~~~~~~~R~~R~~~~l~V~pSL~vs~~~~~s~s~~----~e~~v~ 939 (1269)
.|+|... +-.+.-|-. ..|+|-+-.-+.|.-.. +..|-|| -...+.|..+++|.+.+....|++ .+..|.
T Consensus 58 ei~~~~c-~~~vi~hevkeig~hilicavny~tq~-ge~myfr---kffkf~v~kpidvktkfynaesdlssv~~dvfle 132 (348)
T KOG2625|consen 58 EIEPDCC-EDDVIHHEVKEIGQHILICAVNYKTQA-GEKMYFR---KFFKFPVLKPIDVKTKFYNAESDLSSVNDDVFLE 132 (348)
T ss_pred hcCcccc-chhhhhHHHHhhccEEEEEEEeeeccC-ccchhHH---hhccccccccccccceeecccccccccchhhhhh
Confidence 1111100 001111112 36888888888887544 4446564 567899999999999988776654 344455
Q ss_pred EEEEeCCCCccEEEEEEEe-eecceeEeecCCCCccCCcccccccceEEEEEEEeecCCCCCCCCCCCCCCccccCceee
Q 000815 940 MDVVNQTSSENFQIHQLSS-VGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSL 1018 (1269)
Q Consensus 940 v~V~N~~~~e~f~l~qvs~-vS~~W~l~~l~~~~~~~~~~~~~~~q~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~l 1018 (1269)
-.++|++.+..| +..|+. -|-++.++.+...+. .|+-++. ..+-..|
T Consensus 133 aqien~s~a~mf-lekv~ldps~~ynvt~i~~~~e--------~gdcvst-----------------------fg~~~~l 180 (348)
T KOG2625|consen 133 AQIENMSNANMF-LEKVELDPSIHYNVTEIAHEDE--------AGDCVST-----------------------FGSGALL 180 (348)
T ss_pred hhhhcccccchh-hhhhccCchheecceeecchhh--------ccccccc-----------------------ccccccc
Confidence 566777654321 111100 011111111100000 0000000 0011111
Q ss_pred cCCCcccccccCCcchhhhHHHhhhhhcccCCCCc-ceEEEEecccccCCCCCCCCCccccceeeecccccccCceEEEE
Q 000815 1019 QGTADTLFDISGSPLADFHAHERLLQRVSQDDTNT-VDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLV 1097 (1269)
Q Consensus 1019 ~~~~~~~~~~s~~p~~~f~~~~~~~~~~~~~~~~~-~~~i~~w~~~~~~~~~~~~~~~~~g~~h~~~~~~~~~~~i~~~l 1097 (1269)
...+..+|--.-.|-+||++.--+-. +... =-+=+.|+....|. | ++ |.-...+-.-+-..++.++
T Consensus 181 kp~d~rq~l~cl~pk~d~~~~~gi~k-----~lt~igkldi~wktnlgek--g-----rl-qts~lqriapgygdvrlsl 247 (348)
T KOG2625|consen 181 KPKDIRQFLFCLKPKADFAEKAGIIK-----DLTSIGKLDISWKTNLGEK--G-----RL-QTSALQRIAPGYGDVRLSL 247 (348)
T ss_pred CccchhhheeecCchHHHHHhhcccc-----ccceeeeeEEEeecccccc--c-----cc-hHHHHHhhcCCCCceEEEe
Confidence 11222223333344455544322110 1111 01235687755443 1 10 0000011011223455555
Q ss_pred e-cCceeeccCCCcceeEeEEEEEEcCCCccEeEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCccccccccccccccc
Q 000815 1098 D-GPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQ 1176 (1269)
Q Consensus 1098 ~-~p~~~~h~f~~~~c~v~~~l~l~N~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1176 (1269)
+ -|..+... .+ ..+.-.|.|||+-.+|+..++-...
T Consensus 248 e~~p~~vdle--ep---f~iscki~ncseraldl~l~l~~~n-------------------------------------- 284 (348)
T KOG2625|consen 248 EAIPACVDLE--EP---FEISCKITNCSERALDLQLELCNPN-------------------------------------- 284 (348)
T ss_pred eccccccccC--CC---eEEEEEEcccchhhhhhhhhhcCCC--------------------------------------
Confidence 3 23333322 11 1234467899999988877753221
Q ss_pred CCccccccCCccCcCCceEEeccccceeE-ecCCceeeEeeEEEEecCceeccCccEEEEEE
Q 000815 1177 LPLNQVKRSSLLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALNWKL 1237 (1269)
Q Consensus 1177 ~~~~~~~~~~~~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~~~~G~y~l~~~~~~~~~ 1237 (1269)
..-..|||.+-.++- |.|-+..++.|.+-=..-|.-.+|..|++=++
T Consensus 285 --------------nrhi~~c~~sg~qlgkl~ps~~l~~al~l~~~~~giqsisgiritdtf 332 (348)
T KOG2625|consen 285 --------------NRHIHFCGISGRQLGKLHPSQHLCFALNLFPSTQGIQSISGIRITDTF 332 (348)
T ss_pred --------------CceeEEeccccccccCCCCcceeeeEEeeccchhcceeecceEeehhh
Confidence 334789999999997 99999999999988888888888888887544
No 31
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=93.03 E-value=0.76 Score=44.32 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=57.9
Q ss_pred CeEEEEEccCCc-cccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCC
Q 000815 773 PKLEGLIHPLPE-RAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFN 851 (1269)
Q Consensus 773 P~Lev~~~~~P~-~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~ 851 (1269)
|.|++.-..+.. .+..|+.....|+|+|.|..|++ .++.. |.- ..
T Consensus 2 P~l~v~P~~ldFG~v~~g~~~~~~v~l~N~s~~p~~-f~v~~--~~~-----~~-------------------------- 47 (102)
T PF14874_consen 2 PTLEVSPKELDFGNVFVGQTYSRTVTLTNTSSIPAR-FRVRQ--PES-----LS-------------------------- 47 (102)
T ss_pred CEEEEeCCEEEeeEEccCCEEEEEEEEEECCCCCEE-EEEEe--CCc-----CC--------------------------
Confidence 555554433333 57999999999999999997742 22222 210 00
Q ss_pred CCCCceec-cCCCcccCCCCeEEEEEEEEec-CCceeEEEEEEEEec
Q 000815 852 KMPQAVFS-FPEGISIQGETPLLWPLWYRAA-VPGKISLSITIYYEM 896 (1269)
Q Consensus 852 ~~~~~v~~-~p~~~~L~pGes~~~plwlra~-~~G~~~l~~LfyYe~ 896 (1269)
..|. .|..+.|.||++.++.+-+.++ ..|..+-.+.+..|.
T Consensus 48 ----~~~~v~~~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l~i~~e~ 90 (102)
T PF14874_consen 48 ----SFFSVEPPSGFLAPGESVELEVTFSPTKPLGDYEGSLVITTEG 90 (102)
T ss_pred ----CCEEEECCCCEECCCCEEEEEEEEEeCCCCceEEEEEEEEECC
Confidence 0111 1233589999999999999955 689999999887764
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=92.84 E-value=5.8 Score=54.80 Aligned_cols=184 Identities=17% Similarity=0.024 Sum_probs=110.0
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
|.-.+|.+++..|+|+.|...|+.+.+.-- .+.. -+.|........ .....++...++.+...|-..
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p---~~~~--la~~y~~~~~~~-~g~~~~A~~~L~~ll~~~P~~------- 180 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAP---PELD--LAVEYWRLVAKL-PAQRPEAINQLQRLNADYPGN------- 180 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCC---CChH--HHHHHHHHHhhC-CccHHHHHHHHHHHHHhCCCC-------
Confidence 346678899999999999999998765322 2211 123332222211 112234445555544443111
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc--hhhHHHH-HHH------------HHhhhcCCC--CCCchhHHH--
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVML-EQA------------SYCYLLSKP--PMLHKYGFH-- 478 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~--l~sAlll-Eqa------------A~c~l~~~~--p~~RK~Af~-- 478 (1269)
.+..+..+.++...|.+++|...|-++....+ ...+.++ +++ -..|+..-+ +..+++...
T Consensus 181 -~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~ 259 (1157)
T PRK11447 181 -TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLA 259 (1157)
T ss_pred -HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 23344567777778889998888877654321 2222222 111 011111111 111111111
Q ss_pred ------------HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 479 ------------LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 479 ------------~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..+.|..+.+.|+...|+.+|++++...... ..+++.||..+...|+.++|+.+|.+
T Consensus 260 ~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~l~~ 328 (1157)
T PRK11447 260 EQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKD------SEALGALGQAYSQQGDRARAVAQFEK 328 (1157)
T ss_pred HHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1234788889999999999999999997643 46789999999999999999988766
No 33
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.75 E-value=6.5 Score=46.09 Aligned_cols=188 Identities=21% Similarity=0.201 Sum_probs=132.3
Q ss_pred ChHHHHH-HhhhHHHHhhCHHHHHHH----HHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHh
Q 000815 334 SIESQIR-ILGDYAFMLRDYELALSN----YRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYA 408 (1269)
Q Consensus 334 S~E~q~R-rLADlaFml~DY~~A~s~----Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~ 408 (1269)
+.|.|+- -|+.|.-.++||+.|.-+ |++.+.=--.|-.-+|.+.++==+||++=|++. --++..+.|+|+.--+
T Consensus 159 ~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~-LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 159 MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR-LGDAMECCEEAMKLAL 237 (518)
T ss_pred eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHH
Confidence 5666654 589999999999998764 555554333455558999999889999998762 2356678888888777
Q ss_pred hcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHH---H-HhCcCc-hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 000815 409 KIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYF---R-ICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSG 483 (1269)
Q Consensus 409 ~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~---r-~~~e~~-l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg 483 (1269)
..+- +..-.||++..+.|++.+|+.+.|-+.+- + |.+-++ ++.-..+--+|-|.-..
T Consensus 238 ~~Gd--ra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~---------------- 299 (518)
T KOG1941|consen 238 QHGD--RALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETL---------------- 299 (518)
T ss_pred HhCC--hHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH----------------
Confidence 7662 35568999999999999999876644442 2 233333 66666666677764321
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|-..-++.=.|+..-.++++|-+..|-...---||-.|+-.|..+|.-++.-.|+.+
T Consensus 300 -r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r 356 (518)
T KOG1941|consen 300 -RLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR 356 (518)
T ss_pred -HHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 222223335567777777777777787777777888888888888888887777766
No 34
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.70 E-value=0.86 Score=50.40 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=74.9
Q ss_pred CchHHHHHHHHHHhCcC----c-hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 433 HQYKDAATVYFRICGEE----P-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 433 ~~~~eaa~~l~r~~~e~----~-l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
+.|+||+..+.|+.+.- + =-++-...+||.|++.. ....-+|=.+|-|++-|.|. ++..|.+|+..|.++|-
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~--~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt 104 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKA--GSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYT 104 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc--CCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHH
Confidence 35889998888766421 1 12345556788877643 45677889999999999998 99999999999999998
Q ss_pred CCCccchHHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 000815 508 GSTWSHIKDHVHFHIGQWYAV-LGMHDIAVAHMLE 541 (1269)
Q Consensus 508 ~~~W~~i~dhi~~~Lgr~~~~-Lg~~~~Av~hll~ 541 (1269)
..|=-.+----|..||..+.+ |.+++.||.|+-.
T Consensus 105 ~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~ 139 (288)
T KOG1586|consen 105 DMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQ 139 (288)
T ss_pred hhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHH
Confidence 877433333335667766654 3667777766543
No 35
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=91.23 E-value=6 Score=46.39 Aligned_cols=170 Identities=16% Similarity=0.095 Sum_probs=104.8
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhcccc-chhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDK-AWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dk-aw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
..|... ..|-.+++.|||+.|...|+.+-..+-.|. +| -+ ++.++..+...... ..+..++.. . ..
T Consensus 42 ~~e~~~-~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~-------~~-~~~~~~~~~~~~~~-~~~~~~l~~-~--~~ 108 (355)
T cd05804 42 ERERAH-VEALSAWIAGDLPKALALLEQLLDDYPRDLLAL-------KL-HLGAFGLGDFSGMR-DHVARVLPL-W--AP 108 (355)
T ss_pred HHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHH-------HH-hHHHHHhcccccCc-hhHHHHHhc-c--Cc
Confidence 445544 457788999999999999998777655443 11 11 33344333211111 112222222 1 11
Q ss_pred CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCc
Q 000815 413 SGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQI 492 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~ 492 (1269)
.. ..........+.++...|.+++|...+-+..... |.. +.....-|+-|...|+.
T Consensus 109 ~~-~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-------------------p~~----~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 109 EN-PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-------------------PDD----AWAVHAVAHVLEMQGRF 164 (355)
T ss_pred CC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------------CCC----cHHHHHHHHHHHHcCCH
Confidence 11 1222333344566777889998877766654321 111 22234458888999999
Q ss_pred hHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 493 NHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 493 ~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
..|..+|..++...... +...-|.+..+++.+...|+.++|++.+-+.
T Consensus 165 ~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 165 KEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999887642 2345577889999999999999999888653
No 36
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=90.90 E-value=5.3 Score=51.63 Aligned_cols=166 Identities=16% Similarity=0.167 Sum_probs=104.5
Q ss_pred ChHH-HHHHhhhHHHHhhCHHHHHHHHH-HHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcC
Q 000815 334 SIES-QIRILGDYAFMLRDYELALSNYR-LISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIG 411 (1269)
Q Consensus 334 S~E~-q~RrLADlaFml~DY~~A~s~Y~-~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~ 411 (1269)
++|. ||=..|-..|.-||++.|.-+.. .+|.|=+++-||.++|=+.|--| +. +.|++..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG-----------d~----eK~l~~~l--- 197 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG-----------DI----EKALNFWL--- 197 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc-----------cH----HHHHHHHH---
Confidence 6754 78889999999999999999986 77888888888877777776221 22 22222222
Q ss_pred CCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcC--CCCCCchhHHHHHHHHHHHHhC
Q 000815 412 SSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLS--KPPMLHKYGFHLVLSGDRYKKC 489 (1269)
Q Consensus 412 ~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~--~~p~~RK~Af~~vLAg~ry~ka 489 (1269)
+++-+- .+.++...++.......+ .++||.+||.+. -.|+.+|+-. ==+.-|.+-
T Consensus 198 ------------lAAHL~--p~d~e~W~~ladls~~~~------~i~qA~~cy~rAI~~~p~n~~~~~---ers~L~~~~ 254 (895)
T KOG2076|consen 198 ------------LAAHLN--PKDYELWKRLADLSEQLG------NINQARYCYSRAIQANPSNWELIY---ERSSLYQKT 254 (895)
T ss_pred ------------HHHhcC--CCChHHHHHHHHHHHhcc------cHHHHHHHHHHHHhcCCcchHHHH---HHHHHHHHh
Confidence 111111 122222222222211111 134556666542 2344444422 223467888
Q ss_pred CCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 490 DQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 490 gq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|+.+.|++||.++++.-....|..+++-|.. .++.....++-+.|++.|..
T Consensus 255 G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~-~~~~~~~~~~~e~a~~~le~ 305 (895)
T KOG2076|consen 255 GDLKRAMETFLQLLQLDPPVDIERIEDLIRR-VAHYFITHNERERAAKALEG 305 (895)
T ss_pred ChHHHHHHHHHHHHhhCCchhHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999998899999888854 45666777777888776655
No 37
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=90.87 E-value=6.8 Score=52.90 Aligned_cols=103 Identities=10% Similarity=-0.117 Sum_probs=65.5
Q ss_pred hcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCC------------CCchhHHHHHHHHHHHHhCCCchHHHHH
Q 000815 431 ARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP------------MLHKYGFHLVLSGDRYKKCDQINHAIRT 498 (1269)
Q Consensus 431 ~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p------------~~RK~Af~~vLAg~ry~kagq~~~AlrC 498 (1269)
..|.+++|..++-++...+|- +-.+-..|.++...... ..-..+......|..+.+.|+...|+.+
T Consensus 588 ~~Gr~~eAl~~~~~AL~l~P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 588 IPGQPELALNDLTRSLNIAPS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 448888888887777654431 11222233333322110 0011122344556777888899999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 499 YRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 499 y~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|..|+....+. -.+++.||..+..+|++++|++++.+
T Consensus 666 l~~AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~ 702 (987)
T PRK09782 666 LERAHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARL 702 (987)
T ss_pred HHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99998886533 36788999999999999999888766
No 38
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=90.87 E-value=8 Score=50.08 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=90.3
Q ss_pred HHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChh---HHHHHHHHHHHHHhhcCCCchh
Q 000815 340 RILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRK---EAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~---~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
..++..++-.|+|+.|...|+.+.+....+ +.+....|.+++.++.... .+..+++.|+... + .
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~----P---~ 282 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN----S---D 282 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC----C---C
Confidence 455666677777777777777665532211 3334445555554443211 1233344333221 1 1
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHH
Q 000815 417 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAI 496 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~Al 496 (1269)
-.+.....+.++...|.+++|...+-++...++ ..-- . ...-|.-|.+.|+...|+
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P--------------------~~~~--a-~~~La~~l~~~G~~~eA~ 338 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATHP--------------------DLPY--V-RAMYARALRQVGQYTAAS 338 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------------------CCHH--H-HHHHHHHHHHCCCHHHHH
Confidence 123444456667777777777766655543222 1111 1 112356677889999999
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 497 RTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 497 rCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.+|..++..-... -..+..+|..+..+|+.++|++++.+
T Consensus 339 ~~l~~al~~~P~~------~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 339 DEFVQLAREKGVT------SKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred HHHHHHHHhCccc------hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9998888764321 12344567788889999999887766
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=90.78 E-value=4.2 Score=49.05 Aligned_cols=161 Identities=18% Similarity=0.240 Sum_probs=94.6
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCC-hhHHHHHHHHHH--HHHh--hcCC
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAF--TTYA--KIGS 412 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~-~~~~~~~le~A~--~~Y~--~~~~ 412 (1269)
..-+.|-.+.-.+||+.|.+.++-++| +|.- -- -.|--.|..|---+ ++....+-++++ ..|. +||-
T Consensus 264 i~~~~A~~~y~~rDfD~a~s~Feei~k---nDPY---Rl--~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCi 335 (559)
T KOG1155|consen 264 IKTQIAAASYNQRDFDQAESVFEEIRK---NDPY---RL--DDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCI 335 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHh---cCCC---cc--hhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceee
Confidence 344567778888999999999998887 4431 11 13333443331111 111111112221 1222 4442
Q ss_pred CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCc
Q 000815 413 SGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQI 492 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~ 492 (1269)
.+-+| ..|+.++.|+.++-|++.-+ +|++---+|.||.|..-.-.
T Consensus 336 IaNYY------------Slr~eHEKAv~YFkRALkLN-----------------------p~~~~aWTLmGHEyvEmKNt 380 (559)
T KOG1155|consen 336 IANYY------------SLRSEHEKAVMYFKRALKLN-----------------------PKYLSAWTLMGHEYVEMKNT 380 (559)
T ss_pred ehhHH------------HHHHhHHHHHHHHHHHHhcC-----------------------cchhHHHHHhhHHHHHhccc
Confidence 22233 34567777877777765322 34544466777777777777
Q ss_pred hHHHHHHHHHHHhhcC--CCccch--------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 493 NHAIRTYRSAVSVYKG--STWSHI--------------------------KDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 493 ~~AlrCy~~a~~vY~~--~~W~~i--------------------------~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-|+.||++|..+-.. ++|-.+ +.-+...||.++-.++++++|++.+-+
T Consensus 381 ~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 381 HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7777777777776542 233221 233678999999999999999988866
No 40
>PRK04841 transcriptional regulator MalT; Provisional
Probab=90.22 E-value=17 Score=48.53 Aligned_cols=181 Identities=12% Similarity=-0.033 Sum_probs=112.1
Q ss_pred HhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHH
Q 000815 341 ILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATR 420 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R 420 (1269)
.+|-.+++.|||+.|...++.+...+..+. +...+.+.-+.|.++...+ ...+...+++.|...+...+.. ....+
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~lg~~~~~~G-~~~~A~~~~~~al~~~~~~g~~--~~~~~ 532 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTW-YYSRIVATSVLGEVHHCKG-ELARALAMMQQTEQMARQHDVY--HYALW 532 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHhhhcch--HHHHH
Confidence 356778899999999999998776543322 2222333334455544433 2234556778887776665432 34455
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHH
Q 000815 421 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 500 (1269)
Q Consensus 421 ~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~ 500 (1269)
+....+.++...|.+++|...+-+.... .++.. .+...-....+. +.|.-+...|+...|..++.
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~--------~~~~~------~~~~~~~~~~~~-~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQL--------IEEQH------LEQLPMHEFLLR-IRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--------HHHhc------cccccHHHHHHH-HHHHHHHHhcCHHHHHHHHH
Confidence 6667788888899999987766544210 00000 000000111122 23444555699999999999
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 501 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 501 ~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.++.+++..+ ....-..+..+|+.+...|+.+.|.+++.+
T Consensus 598 ~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 598 KGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999987544 223345566789999999999999877655
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=90.19 E-value=6.6 Score=49.28 Aligned_cols=197 Identities=19% Similarity=0.255 Sum_probs=111.1
Q ss_pred HHHHHhhhHHHHhhCHHHHHHHHHHHhhhhc---------cccchhhhhchHHHHHHHHHhc---cCChhHHH-------
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYK---------LDKAWKRYAGVQEMMGLTYFML---DQSRKEAE------- 397 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~---------~Dkaw~~~A~a~EM~als~ll~---~~~~~~~~------- 397 (1269)
+-+-+||=.+|=|+||+.|..+++.+|+-.. +.--| | -++-+++|+|-+ .+.+..++
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-H---Lq~~v~Ls~Laq~Li~~~~~sPesWca~GN 429 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-H---LQDEVALSYLAQDLIDTDPNSPESWCALGN 429 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-H---HHhhHHHHHHHHHHHhhCCCCcHHHHHhcc
Confidence 7788899999999999999999999997321 11112 1 133344555433 22221111
Q ss_pred -----HHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhH-----HH------HHHH
Q 000815 398 -----YCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSA-----VM------LEQA 460 (1269)
Q Consensus 398 -----~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sA-----ll------lEqa 460 (1269)
.--|.|+..+.+.-..+..+|.=.+|++.|... +..++.|.+.+-.++..++ -..| ++ +|.|
T Consensus 430 cfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~A 508 (638)
T KOG1126|consen 430 CFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFA 508 (638)
T ss_pred hhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHH
Confidence 113456666665554555677777787777664 3456666655433332221 0011 00 1111
Q ss_pred HHhhhc--CCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC----------------------------
Q 000815 461 SYCYLL--SKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST---------------------------- 510 (1269)
Q Consensus 461 A~c~l~--~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~---------------------------- 510 (1269)
=+-|-. ...|.-+- -++-+|.-|.+.|+...|++.|.+|...=....
T Consensus 509 e~~fqkA~~INP~nsv---i~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 509 EFHFQKAVEINPSNSV---ILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHhhhcCCccchh---HHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 111110 01222222 256678888889999999999888865422110
Q ss_pred ccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 511 WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 511 W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-..-+--+++.||+.+..+|+.+.|+.||.-
T Consensus 586 ~vP~es~v~~llgki~k~~~~~~~Al~~f~~ 616 (638)
T KOG1126|consen 586 LVPQESSVFALLGKIYKRLGNTDLALLHFSW 616 (638)
T ss_pred hCcchHHHHHHHHHHHHHHccchHHHHhhHH
Confidence 1112334677888888888888888888765
No 42
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=89.68 E-value=34 Score=37.36 Aligned_cols=185 Identities=16% Similarity=0.173 Sum_probs=111.8
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCC
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSS 413 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~ 413 (1269)
.++..+=..|--+|--|||+.|...|+.+.+.|-... +..-|+-|+|-+.+..+. -.++...++.-+..|=+....
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~---~a~~A~l~la~a~y~~~~-y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSP---YAPQAQLMLAYAYYKQGD-YEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST---THHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-TT-TTH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh---HHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcch
Confidence 3444555678888999999999999999999987644 566777888888887642 112233444434444333211
Q ss_pred chhhH-HHHHHHHHHHHHh-----cCc--hHHHHHHHHHHhCc--CchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHH
Q 000815 414 GQQNA-TRCGLWWVEMLKA-----RHQ--YKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSG 483 (1269)
Q Consensus 414 ~~~~A-~R~~ll~~e~l~~-----~~~--~~eaa~~l~r~~~e--~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg 483 (1269)
-+| .+-++-.+..... ++. ..+|...+-..... ++-.+.-..++.+.|- .+-|-|-+..|
T Consensus 79 --~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~--------~~la~~e~~ia 148 (203)
T PF13525_consen 79 --DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELR--------NRLAEHELYIA 148 (203)
T ss_dssp --HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHH--------HHHHHHHHHHH
Confidence 122 2222222222221 111 23344333333322 2334444455555532 56777788899
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHH
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA 535 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~A 535 (1269)
..|.+-|...-|+.-|..++.-|.+..|. +--...|++.+..||..+.|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~---~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENYPDTPAA---EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHSTTSHHH---HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCCchH---HHHHHHHHHHHHHhCChHHH
Confidence 99999999999999999999999988763 33778899999999998855
No 43
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=88.86 E-value=0.9 Score=41.17 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=48.9
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCC-ccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGST-WSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~-W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-.-|..|...|+...|+.+|.+|+.+++..| ....--..+..||..+..+|++++|++++.+
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3446678899999999999999999976554 3323356789999999999999999988754
No 44
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=88.39 E-value=13 Score=49.07 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=106.6
Q ss_pred hHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCc
Q 000815 335 IESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSG 414 (1269)
Q Consensus 335 ~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~ 414 (1269)
...++.+|+-+ +..++|+.|...|+.+.++...+..+ +..+.|..++-++ ...++..+++.++.. ....
T Consensus 237 ~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~-----a~~~la~~yl~~g-~~e~A~~~l~~~l~~----~p~~ 305 (765)
T PRK10049 237 QRARIDRLGAL-LARDRYKDVISEYQRLKAEGQIIPPW-----AQRWVASAYLKLH-QPEKAQSILTELFYH----PETI 305 (765)
T ss_pred HHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCCCCHH-----HHHHHHHHHHhcC-CcHHHHHHHHHHhhc----CCCC
Confidence 34455568877 57799999999999998874322322 2333444444333 233444555554421 1110
Q ss_pred -hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCch
Q 000815 415 -QQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQIN 493 (1269)
Q Consensus 415 -~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~ 493 (1269)
........-+ +.++...|.+++|..++-++....|-...++- +....|--.+... ..+.|..+...|+..
T Consensus 306 ~~~~~~~~~~L-~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~-------~~~~~p~~~~~~a-~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 306 ADLSDEELADL-FYSLLESENYPGALTVTAHTINNSPPFLRLYG-------SPTSIPNDDWLQG-QSLLSQVAKYSNDLP 376 (765)
T ss_pred CCCChHHHHHH-HHHHHhcccHHHHHHHHHHHhhcCCceEeecC-------CCCCCCCchHHHH-HHHHHHHHHHcCCHH
Confidence 0001111111 22345678899999888877654431100000 0011222122211 346666777889999
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 494 HAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 494 ~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.|+.+|..++....+.. .+...+|..+...|+++.|++.+-+
T Consensus 377 eA~~~l~~al~~~P~n~------~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 377 QAEMRARELAYNAPGNQ------GLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred HHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999999887654 4888999999999999999988765
No 45
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=87.63 E-value=1.7 Score=40.20 Aligned_cols=51 Identities=14% Similarity=0.215 Sum_probs=32.8
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-|.+.|+...|+..+.. ..+..-...+++.+|+.++.+|+.++|+++|-+
T Consensus 33 ~~~~~~~~y~~A~~~~~~-------~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 33 QCYFQQGKYEEAIELLQK-------LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHTTHHHHHHHHHHC-------HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHH-------hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 334455555666665554 233333345566779999999999999998853
No 46
>PRK12370 invasion protein regulator; Provisional
Probab=87.55 E-value=14 Score=46.75 Aligned_cols=176 Identities=12% Similarity=-0.017 Sum_probs=91.1
Q ss_pred hCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCC-hhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 000815 350 RDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS-RKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEM 428 (1269)
Q Consensus 350 ~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~-~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~ 428 (1269)
.+++.|...|+.+.+- |.. ++.+.-+.|.|++..+.. ..+...-++.|...|.+.-...+..+ .+....+.+
T Consensus 275 ~~~~~A~~~~~~Al~l---dP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~-~a~~~lg~~ 347 (553)
T PRK12370 275 YSLQQALKLLTQCVNM---SPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNP-QALGLLGLI 347 (553)
T ss_pred HHHHHHHHHHHHHHhc---CCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCH-HHHHHHHHH
Confidence 5688999999866642 221 122333444444422110 00111123444444443221111111 222333556
Q ss_pred HHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCC---------------CCCCchhHHHHHHHHHHHHhCCCch
Q 000815 429 LKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSK---------------PPMLHKYGFHLVLSGDRYKKCDQIN 493 (1269)
Q Consensus 429 l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~---------------~p~~RK~Af~~vLAg~ry~kagq~~ 493 (1269)
+...|.+++|...+-++...+|-. +..+-..|.+|.... .|..-.+ ++.+++. +...|+..
T Consensus 348 ~~~~g~~~~A~~~~~~Al~l~P~~-~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~--~~~~~~~-~~~~g~~e 423 (553)
T PRK12370 348 NTIHSEYIVGSLLFKQANLLSPIS-ADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA--GITKLWI-TYYHTGID 423 (553)
T ss_pred HHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh--HHHHHHH-HHhccCHH
Confidence 667889999998888776544311 111122233333221 2332222 2333433 44478889
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 494 HAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 494 ~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.|+.+|+.++...... ....+..+|..+..+|+.++|..++.+
T Consensus 424 eA~~~~~~~l~~~~p~-----~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 424 DAIRLGDELRSQHLQD-----NPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHhcccc-----CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999988664211 122457789888899999999988755
No 47
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=11 Score=46.75 Aligned_cols=65 Identities=26% Similarity=0.344 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q 000815 473 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKT 543 (1269)
Q Consensus 473 RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~~ 543 (1269)
++..=-...=||.|.|++....|+-||++|+..-. +. --.|-++|=.+..+|+++.|+.||=+.+
T Consensus 452 ~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~-k~-----~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 452 IFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSP-KD-----ASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred cchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCC-Cc-----hhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 33333367789999999999999999999998744 33 3467899999999999999999986643
No 48
>PRK04841 transcriptional regulator MalT; Provisional
Probab=86.90 E-value=31 Score=46.23 Aligned_cols=145 Identities=17% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHh---CcCchhhHHHHH--H----------
Q 000815 395 EAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRIC---GEEPLHSAVMLE--Q---------- 459 (1269)
Q Consensus 395 ~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~---~e~~l~sAlllE--q---------- 459 (1269)
++..+++.|...+.... . .....+....+.+...+|.+.+|...+-++. ...........+ .
T Consensus 591 ~A~~~~~~al~~~~~~~-~--~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQ-P--QQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred HHHHHHHHhHHhhhccC-c--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 34455666655544332 1 2334566667778888999998877664432 111100000000 0
Q ss_pred ---HHHhhhc-CCCCCCchh---HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCH
Q 000815 460 ---ASYCYLL-SKPPMLHKY---GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH 532 (1269)
Q Consensus 460 ---aA~c~l~-~~~p~~RK~---Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~ 532 (1269)
+|.-++. ...+..... .......|.-+...|+...|...|..++...+..+...-.-.++..+|..+..+|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 1111111 011110110 111346677788999999999999999999888777666666778899999999999
Q ss_pred HHHHHHHHHh
Q 000815 533 DIAVAHMLEK 542 (1269)
Q Consensus 533 ~~Av~hll~~ 542 (1269)
+.|..++.+.
T Consensus 748 ~~A~~~L~~A 757 (903)
T PRK04841 748 SEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHH
Confidence 9999888773
No 49
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=86.23 E-value=63 Score=37.80 Aligned_cols=191 Identities=13% Similarity=-0.008 Sum_probs=113.1
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
-...+|-.++..|+|+.|..+|+.+.+--..+ +| +.-+.|..+...+. ..+...+++.++..+-.. ...
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~-~~-----~~~~la~i~~~~g~-~~eA~~~l~~~l~~~~~~----~~~ 184 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDD-AW-----AVHAVAHVLEMQGR-FKEGIAFMESWRDTWDCS----SML 184 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-cH-----HHHHHHHHHHHcCC-HHHHHHHHHhhhhccCCC----cch
Confidence 34467888999999999999999776532222 22 23334444444331 234455666555443221 123
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc----h----hhHHHHHH---------------HHHhhhcCCCCCCch
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP----L----HSAVMLEQ---------------ASYCYLLSKPPMLHK 474 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~----l----~sAlllEq---------------aA~c~l~~~~p~~RK 474 (1269)
...+.+..+.++..+|.+++|...+-++....+ + ..+.++.+ ++..... ..+. .-
T Consensus 185 ~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~-~~~~-~~ 262 (355)
T cd05804 185 RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAW-HFPD-HG 262 (355)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHh-hcCc-cc
Confidence 344555667778889999998888766542221 1 11111111 1110000 0000 11
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC---CCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG---STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~---~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..|.-+..+--+...|+...|.+-...+...-+. .+|....-.+....+-.++..|+.+.|++.|.+
T Consensus 263 ~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~ 332 (355)
T cd05804 263 LAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGP 332 (355)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2233344555556778888888888887777766 677777777777788888999999999988866
No 50
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=86.16 E-value=1.9 Score=37.61 Aligned_cols=55 Identities=15% Similarity=0.130 Sum_probs=47.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-|..|.+.|+...|+.+|.+++..+.+ ....++.+|+.++.+|++++|+..+.+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3577899999999999999999999854 677889999999999999999977755
No 51
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=85.41 E-value=23 Score=42.91 Aligned_cols=112 Identities=10% Similarity=-0.023 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHHHHHH---------HHh--hhcCCCCCCchhHHHHHHHHHHHH
Q 000815 420 RCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQA---------SYC--YLLSKPPMLHKYGFHLVLSGDRYK 487 (1269)
Q Consensus 420 R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAlllEqa---------A~c--~l~~~~p~~RK~Af~~vLAg~ry~ 487 (1269)
...+..+..+...|..++|...+.+.....+ -..++++-++ ..+ ++... | .-+--.+.-|.-+.
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~-P---~~~~l~l~lgrl~~ 339 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQH-G---DTPLLWSTLGQLLM 339 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhC-C---CCHHHHHHHHHHHH
Confidence 3445567778888999998888877665332 2222222111 000 11111 1 12233566688888
Q ss_pred hCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 488 KCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 488 kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
+.+++..|...|..++..-. .+..+..|++....+|+.+.|..++.+.
T Consensus 340 ~~~~~~~A~~~le~al~~~P-------~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQRP-------DAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HCCCHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988743 2333457999999999999998887653
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=85.25 E-value=24 Score=38.59 Aligned_cols=90 Identities=11% Similarity=0.003 Sum_probs=65.8
Q ss_pred HHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCC--chHHHHHHHH
Q 000815 424 WWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQ--INHAIRTYRS 501 (1269)
Q Consensus 424 l~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq--~~~AlrCy~~ 501 (1269)
..+.++...|.+++|...+-++..- . .....++.-+|.-.|...|+ ...|..+|..
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l-------------------~---P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQL-------------------R---GENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-------------------C---CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3356777788888887666554321 1 14555566666666777776 4899999999
Q ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 502 AVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 502 a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
++..-.+. -..++.||..++.+|++++|+.++-+
T Consensus 136 al~~dP~~------~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 136 ALALDANE------VTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHhCCCC------hhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99987643 35779999999999999999988765
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=84.13 E-value=42 Score=44.39 Aligned_cols=56 Identities=7% Similarity=-0.206 Sum_probs=37.9
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCCccc---------hHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 486 YKKCDQINHAIRTYRSAVSVYKGSTWSH---------IKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 486 y~kagq~~~AlrCy~~a~~vY~~~~W~~---------i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+.+.|+...|+.-|..+...-....+.. -.......++..+...|+.+.|++.|-+
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4677888888888887776643211111 1123567788888899999999887665
No 54
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=83.06 E-value=26 Score=35.86 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=58.5
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc--CchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCch
Q 000815 416 QNATRCGLWWVEMLKARHQYKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQIN 493 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e--~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~ 493 (1269)
.|+..+.|..+.++-..|.+++|...|-.+... ++-...+..=+.|.+++ ..|+..
T Consensus 45 ~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~----------------------~~~~~d 102 (145)
T PF09976_consen 45 PYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL----------------------QQGQYD 102 (145)
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------------------HcCCHH
Confidence 699999999999999999999998888776643 23223344445555544 334444
Q ss_pred HHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHH
Q 000815 494 HAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHML 540 (1269)
Q Consensus 494 ~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll 540 (1269)
.|+.-+.. -.+..|. ...+..+|..+...|+.+.|+..+.
T Consensus 103 ~Al~~L~~----~~~~~~~---~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 103 EALATLQQ----IPDEAFK---ALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHh----ccCcchH---HHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 44443322 1223333 3345566666677777766665543
No 55
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=82.72 E-value=64 Score=39.21 Aligned_cols=191 Identities=9% Similarity=0.009 Sum_probs=109.5
Q ss_pred hHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCc
Q 000815 335 IESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSG 414 (1269)
Q Consensus 335 ~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~ 414 (1269)
|+.-.=..|..+.-.|||+.|...|+.+.+.+..+.. +.++...-+.|.......+...++.....+ +..
T Consensus 117 ~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l------~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~----P~~ 186 (409)
T TIGR00540 117 PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI------LVEIARTRILLAQNELHAARHGVDKLLEMA----PRH 186 (409)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCC
Confidence 4444447789999999999999999998877765441 125443333443322223333444333222 211
Q ss_pred hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc---C--ch-------hhHHHHHHHHH--------hhhcCCCCCCch
Q 000815 415 QQNATRCGLWWVEMLKARHQYKDAATVYFRICGE---E--PL-------HSAVMLEQASY--------CYLLSKPPMLHK 474 (1269)
Q Consensus 415 ~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e---~--~l-------~sAlllEqaA~--------c~l~~~~p~~RK 474 (1269)
. ....+.+.++...|+|++|...+-+.... + .. ..+++ .++.. -+....|...|+
T Consensus 187 -~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l-~~~~~~~~~~~L~~~~~~~p~~~~~ 261 (409)
T TIGR00540 187 -K---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL-DEAMADEGIDGLLNWWKNQPRHRRH 261 (409)
T ss_pred -H---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-HHHHHhcCHHHHHHHHHHCCHHHhC
Confidence 2 33445666777788998887776554421 1 11 11111 11111 011112223333
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC---------------------------ccch---HH--HHHHHH
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGST---------------------------WSHI---KD--HVHFHI 522 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~---------------------------W~~i---~d--hi~~~L 522 (1269)
-.--.+.-|..+.++|+...|..-+..++....... |-.. .- .++.+|
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL 341 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL 341 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence 333334445589999999999999988888654321 2111 11 567789
Q ss_pred HHHHHHhCCHHHHHHHHH
Q 000815 523 GQWYAVLGMHDIAVAHML 540 (1269)
Q Consensus 523 gr~~~~Lg~~~~Av~hll 540 (1269)
|+.++..|+++.|.++|-
T Consensus 342 g~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHHHHcccHHHHHHHHH
Confidence 999999999999999886
No 56
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=82.15 E-value=13 Score=48.25 Aligned_cols=116 Identities=12% Similarity=-0.019 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHH------------hhhcCCCCCCchhHHHHHHHHHHH
Q 000815 419 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASY------------CYLLSKPPMLHKYGFHLVLSGDRY 486 (1269)
Q Consensus 419 ~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~------------c~l~~~~p~~RK~Af~~vLAg~ry 486 (1269)
..+.++.+++...+|.++||..++-+.+...|-..+.....|-. ++-+.-+ .--..+-+..+-|.-+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~-~~p~~~~~~~~~a~~l 164 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS-GGSSSAREILLEAKSW 164 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh-cCCCCHHHHHHHHHHH
Confidence 56677889999999999999999988887554222222222221 1111101 1112334466677889
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 487 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 487 ~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.+.|+...|..||++++. .+. -..+.+..+|..+-.+|+.++|+.-|..
T Consensus 165 ~~~g~~~~A~~~y~~~~~--~~p----~~~~~~~~~a~~l~~~G~~~~A~~~~~~ 213 (694)
T PRK15179 165 DEIGQSEQADACFERLSR--QHP----EFENGYVGWAQSLTRRGALWRARDVLQA 213 (694)
T ss_pred HHhcchHHHHHHHHHHHh--cCC----CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999999999998 433 2467788999999999999999877665
No 57
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=81.76 E-value=27 Score=45.84 Aligned_cols=64 Identities=22% Similarity=0.251 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCCC
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGKT 546 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~~~~~ 546 (1269)
+.||.|-|.|-.. . +|...|.......-=..+.-+=.|.|||.++..|+++.|.+++++.....
T Consensus 274 ~~LAn~fyfK~dy-~---~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 274 NHLANHFYFKKDY-E---RVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHHHhhcccH-H---HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 6677777776532 2 23333444433333344556667999999999999999999999866543
No 58
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=81.67 E-value=12 Score=41.52 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=60.2
Q ss_pred hCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhc----cCCh-hHHHHHHHHHHHHHhhc----CC-CchhhHH
Q 000815 350 RDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFML----DQSR-KEAEYCMENAFTTYAKI----GS-SGQQNAT 419 (1269)
Q Consensus 350 ~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~----~~~~-~~~~~~le~A~~~Y~~~----~~-~~~~~A~ 419 (1269)
.-|++|+-+|+....+.. +++.+|+=+. .... ..-..++..|...|.++ .. ....-..
T Consensus 98 ~~YkLAll~~~~~~~~~s------------~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 98 ESYKLALLCAQIKKEKPS------------KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred HHHHHHHHHHHHhCCCHH------------HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 346666666665554332 5555655442 1111 22234677777666533 11 1123457
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhCcCchh-hHHHHHHH
Q 000815 420 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLH-SAVMLEQA 460 (1269)
Q Consensus 420 R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~-sAlllEqa 460 (1269)
+.+.|.+|+.+-.|.+++|.+|+-|+.+..... -+.+.|+|
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~A 207 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMA 207 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHH
Confidence 889999999999999999999999988754322 24555554
No 59
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=81.65 E-value=21 Score=34.10 Aligned_cols=93 Identities=16% Similarity=0.176 Sum_probs=64.2
Q ss_pred HHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000815 426 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 505 (1269)
Q Consensus 426 ~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~v 505 (1269)
+..+...|.+++|...+.++.... |..... +--....|..|.+.|+...|+.+|..++..
T Consensus 9 ~~~~~~~~~~~~A~~~~~~~~~~~-------------------~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 68 (119)
T TIGR02795 9 ALLVLKAGDYADAIQAFQAFLKKY-------------------PKSTYA-PNAHYWLGEAYYAQGKYADAAKAFLAVVKK 68 (119)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-------------------CCcccc-HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 444555677888776665553211 111111 111345677889999999999999999999
Q ss_pred hcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 506 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 506 Y~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|.+..+. ..+++.+|+.+..+|+.+.|++++-+
T Consensus 69 ~p~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 69 YPKSPKA---PDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred CCCCCcc---cHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 8754422 34578999999999999999988765
No 60
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=81.18 E-value=3.4 Score=36.28 Aligned_cols=57 Identities=18% Similarity=0.261 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLG-MHDIAVAHMLE 541 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg-~~~~Av~hll~ 541 (1269)
...-|..|.+.|+...|+.+|.+|+..-.. ..-+++.+|..+..+| +.++|++++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 456788888999999999999999998542 3448899999999999 79999988754
No 61
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=80.94 E-value=14 Score=46.01 Aligned_cols=193 Identities=19% Similarity=0.250 Sum_probs=113.9
Q ss_pred HhhhHHHHhhCHHHHHHHHH-HHhhhhccccchhhhhchH-----HHHHHHHHhccCC--hhHHHHHHHHHHHHHhhcCC
Q 000815 341 ILGDYAFMLRDYELALSNYR-LISTDYKLDKAWKRYAGVQ-----EMMGLTYFMLDQS--RKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~-~l~~Df~~Dkaw~~~A~a~-----EM~als~ll~~~~--~~~~~~~le~A~~~Y~~~~~ 412 (1269)
+-|+..|=-||-..|.=.|+ .+++|=..-.||+++.=++ |-.||++|+-... +...+-+|.-| .+|.+-+.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLA-VSytNeg~ 368 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALA-VSYTNEGL 368 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHH-HHHhhhhh
Confidence 44666666799888988898 5677777778999988543 5688888874311 12233344333 45655542
Q ss_pred CchhhHHHHHHHHHHHH------Hhc---Cc------------hHHHHHHHHHHh---C--cCc-hhhH--HH------H
Q 000815 413 SGQQNATRCGLWWVEML------KAR---HQ------------YKDAATVYFRIC---G--EEP-LHSA--VM------L 457 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l------~~~---~~------------~~eaa~~l~r~~---~--e~~-l~sA--ll------l 457 (1269)
+.-|++|.==|++.- ... +. +......+.-+. + .++ +.++ +| .
T Consensus 369 --q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 369 --QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred --HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 245666655443321 110 00 011112222222 2 333 3333 33 4
Q ss_pred HHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHH
Q 000815 458 EQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 537 (1269)
Q Consensus 458 EqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~ 537 (1269)
+||..||-..-.-..--|.+|=-|-| ......+...|+-.|.+|++++.+ .....+.||-.|-++|.+++|++
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGA-tLAN~~~s~EAIsAY~rALqLqP~------yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGA-TLANGNRSEEAISAYNRALQLQPG------YVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhH-HhcCCcccHHHHHHHHHHHhcCCC------eeeeehhhhhhhhhhhhHHHHHH
Confidence 77888875532212234444444433 233445888899999999999875 12234899999999999999999
Q ss_pred HHHHhc
Q 000815 538 HMLEKT 543 (1269)
Q Consensus 538 hll~~~ 543 (1269)
|||+.+
T Consensus 520 hlL~AL 525 (579)
T KOG1125|consen 520 HLLEAL 525 (579)
T ss_pred HHHHHH
Confidence 999843
No 62
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=80.66 E-value=36 Score=37.42 Aligned_cols=48 Identities=13% Similarity=-0.053 Sum_probs=36.1
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFM 388 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll 388 (1269)
..-.+|+.++..++|+.|...|+.+.+.+.++... .-+..+.|.+.+-
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---~~a~~~~g~~~~~ 119 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA---DYAYYLRGLSNYN 119 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---HHHHHHHHHHHHH
Confidence 35678999999999999999999998877655432 2245667777653
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=80.51 E-value=24 Score=46.27 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=114.3
Q ss_pred HHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchh
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
.-+-.||-..|.-+||+.+.+.++.+.+--.+ + -|.+=|.+.++-+. -..--+|.|+..|..+-.-...
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~-~---------~~~aes~Y~~gRs~-Ha~Gd~ekA~~yY~~s~k~~~d 339 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTEN-K---------SIKAESFYQLGRSY-HAQGDFEKAFKYYMESLKADND 339 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh-h---------HHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHccCCC
Confidence 45678999999999999999999866542111 1 22333333222100 0111356777777644211111
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHHHHHHHHhhhcC-CCCCCchhHHHH---------------
Q 000815 417 NATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLS-KPPMLHKYGFHL--------------- 479 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAlllEqaA~c~l~~-~~p~~RK~Af~~--------------- 479 (1269)
+-+-..+=.+.++-.+|.+++|..-+.++....+ ..-.+-+ .+..|... +.++.|+-|+-+
T Consensus 340 ~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~i--LG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~ 417 (1018)
T KOG2002|consen 340 NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKI--LGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW 417 (1018)
T ss_pred CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHH--HHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH
Confidence 1111111223444456777777666665553221 1111111 12222222 333333333322
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHhcCC
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKTGK 545 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~~~~ 545 (1269)
+.=|..|.+.+++.+ +-.|..|..++...+=. +.--++..+|-..|.+|++..|..||....++
T Consensus 418 l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 418 LELAQLLEQTDPWAS-LDAYGNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGK 481 (1018)
T ss_pred HHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhh
Confidence 333456777788887 99999999999988766 88889999999999999999999999887665
No 64
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=80.40 E-value=22 Score=42.51 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=49.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 483 GDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 483 g~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|+.|.--|+...|..-|+.++-+-...|=...+-.--+.||..++.+.+++.||.+..+
T Consensus 242 gN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 242 GNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred chhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 55666678899999999988888777777778888899999999999999999966554
No 65
>PRK11189 lipoprotein NlpI; Provisional
Probab=78.38 E-value=82 Score=36.51 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 517 HVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 517 hi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-.++.||+.+..+|+.++|+.+|-+
T Consensus 237 ea~~~Lg~~~~~~g~~~~A~~~~~~ 261 (296)
T PRK11189 237 ETYFYLAKYYLSLGDLDEAAALFKL 261 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3689999999999999999998865
No 66
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=78.20 E-value=19 Score=31.28 Aligned_cols=87 Identities=16% Similarity=0.211 Sum_probs=57.9
Q ss_pred HHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000815 426 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 505 (1269)
Q Consensus 426 ~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~v 505 (1269)
+.++...|.+.+|..++-++....+-.. . .....|.-|...|....|+.+|..++..
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~----------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELDPDNA-D----------------------AYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcCCccH-H----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444556778888777666544322100 1 1223344444557788899999999888
Q ss_pred hcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 506 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 506 Y~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..... .+++.+|..+...|+.+.|..++.+
T Consensus 64 ~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 93 (100)
T cd00189 64 DPDNA------KAYYNLGLAYYKLGKYEEALEAYEK 93 (100)
T ss_pred CCcch------hHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 76544 5678899999999999999888755
No 67
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=77.96 E-value=56 Score=34.50 Aligned_cols=115 Identities=13% Similarity=0.056 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCC--------------CCCchhHHHHHHHHHH
Q 000815 420 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKP--------------PMLHKYGFHLVLSGDR 485 (1269)
Q Consensus 420 R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~--------------p~~RK~Af~~vLAg~r 485 (1269)
++....+.++...|.+++|...+-+....++- ....+-..+.+|..... +......-.+..-|.-
T Consensus 66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 144 (234)
T TIGR02521 66 LAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC 144 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34445566777788898888777665543220 00111122222222111 0011111123334778
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 486 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 486 y~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
|.+.|+...|..+|..++...... .-.+..+|+.++..|+.+.|+.++-+
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999887543 23567899999999999999987755
No 68
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.64 E-value=14 Score=38.12 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=62.2
Q ss_pred HHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000815 426 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 505 (1269)
Q Consensus 426 ~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~v 505 (1269)
+..+..+|.+++|...+-+++..++- .+..| ..-|.-+.+.|+...|+.||.+|+..
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~P~----------------------~~~a~-~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQPW----------------------SWRAH-IALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC----------------------cHHHH-HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 45566789999988777766543331 11122 22344566788889999999999986
Q ss_pred hcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 506 YKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 506 Y~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
=. + ....++.+|..+..+|+.++|+..+..
T Consensus 88 ~p--~----~~~a~~~lg~~l~~~g~~~eAi~~~~~ 117 (144)
T PRK15359 88 DA--S----HPEPVYQTGVCLKMMGEPGLAREAFQT 117 (144)
T ss_pred CC--C----CcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33 2 345678999999999999999988766
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=77.48 E-value=29 Score=40.19 Aligned_cols=154 Identities=10% Similarity=0.135 Sum_probs=84.5
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhh-hhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLIST-DYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIG 411 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~-Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~ 411 (1269)
+.++. .-.+|.++..+|||+.|...|+.+.+ +=.... +.-..|++++-++ ...++...++.|+. ..
T Consensus 96 ~~~~a-~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~-------a~~~lg~~l~~~g-~~~eA~~~~~~al~----~~ 162 (296)
T PRK11189 96 DMADA-YNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-------AYLNRGIALYYGG-RYELAQDDLLAFYQ----DD 162 (296)
T ss_pred CCHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCC-CHHHHHHHHHHHHH----hC
Confidence 34444 46799999999999999999997764 222122 3344455555433 22344455555543 22
Q ss_pred CCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc---CchhhHH------------HHHHHHHhhhcCCCC-CCchh
Q 000815 412 SSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE---EPLHSAV------------MLEQASYCYLLSKPP-MLHKY 475 (1269)
Q Consensus 412 ~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e---~~l~sAl------------llEqaA~c~l~~~~p-~~RK~ 475 (1269)
+. ...|. ++..+....+.+++|...+.+.... +...-++ .++++-..+ ...+ ...+.
T Consensus 163 P~---~~~~~--~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~--~~~~~l~~~~ 235 (296)
T PRK11189 163 PN---DPYRA--LWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGA--TDNTELAERL 235 (296)
T ss_pred CC---CHHHH--HHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcC--CCcHHHHHHH
Confidence 22 22342 3344455667788888887554422 1111111 111111111 0000 01112
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 506 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY 506 (1269)
+--...-|..|.+.|....|+.+|++|+...
T Consensus 236 ~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 236 CETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2224455888999999999999999999875
No 70
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=77.20 E-value=19 Score=38.90 Aligned_cols=93 Identities=11% Similarity=0.069 Sum_probs=64.6
Q ss_pred CCeEEEEEccCCccccCCcEEEEEEEEEecCccccceEEEEecC--CceEEeCCCCCCCccchhhhhccccccccccCCC
Q 000815 772 LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSH--PRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGN 849 (1269)
Q Consensus 772 ~P~Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~--P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~ 849 (1269)
-|+|-++=.-++..+..|+-..++++|.|.|..++.+|.+.=+. |+.|.+-+. .
T Consensus 20 ~a~llv~K~il~~~~v~g~~v~V~~~iyN~G~~~A~dV~l~D~~fp~~~F~lvsG------------------------~ 75 (181)
T PF05753_consen 20 PARLLVSKQILNKYLVEGEDVTVTYTIYNVGSSAAYDVKLTDDSFPPEDFELVSG------------------------S 75 (181)
T ss_pred CcEEEEEEeeccccccCCcEEEEEEEEEECCCCeEEEEEEECCCCCccccEeccC------------------------c
Confidence 46666655556677889999999999999999999999886421 011111100 0
Q ss_pred CCCCCCceeccCCCcccCCCCeEEEEEEEEecCCceeEE-EEEEEEecC
Q 000815 850 FNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISL-SITIYYEMG 897 (1269)
Q Consensus 850 ~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l-~~LfyYe~~ 897 (1269)
.+. ....|.||+.++..+-||+-..|.+.+ ...+-|...
T Consensus 76 -----~s~----~~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY~~~ 115 (181)
T PF05753_consen 76 -----LSA----SWERIPPGENVSHSYVVRPKKSGYFNFTPAVVTYRDS 115 (181)
T ss_pred -----eEE----EEEEECCCCeEEEEEEEeeeeeEEEEccCEEEEEECC
Confidence 000 124899999999999999989999988 555555443
No 71
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=76.89 E-value=23 Score=37.18 Aligned_cols=95 Identities=15% Similarity=0.067 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhCc--CchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHH
Q 000815 423 LWWVEMLKARHQYKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 500 (1269)
Q Consensus 423 ll~~e~l~~~~~~~eaa~~l~r~~~e--~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~ 500 (1269)
+..+.++...|.+++|..++-++... ++...+.. ..--|.-|.+.|+...|+.+|.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~----------------------~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYI----------------------LYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHH----------------------HHHHHHHHHHcCCHHHHHHHHH
Confidence 33445666678899988888776532 11111111 2223566777899999999999
Q ss_pred HHHHhhcCCCcc-chHHHHHHHHHHHHHHhCCHHHHHHHH
Q 000815 501 SAVSVYKGSTWS-HIKDHVHFHIGQWYAVLGMHDIAVAHM 539 (1269)
Q Consensus 501 ~a~~vY~~~~W~-~i~dhi~~~Lgr~~~~Lg~~~~Av~hl 539 (1269)
+|+.+....+.. ...-.++..+|+.+..+|+++.|+..+
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHH
Confidence 999986654322 222456777888888999988776544
No 72
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=76.56 E-value=1e+02 Score=37.37 Aligned_cols=192 Identities=9% Similarity=-0.050 Sum_probs=100.4
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
+++ .-++.++..+.-.|||+.|...++.+.+--..+.. .+... ++.+...++...........++.+ ...-+
T Consensus 185 ~~~-~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~--~~~~l-~~~a~~~~l~~~~~~~~~~~L~~~----~~~~p 256 (409)
T TIGR00540 185 RHK-EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE--EFADL-EQKAEIGLLDEAMADEGIDGLLNW----WKNQP 256 (409)
T ss_pred CCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH--HHHHH-HHHHHHHHHHHHHHhcCHHHHHHH----HHHCC
Confidence 344 35788899999999999999998888875322221 11111 112222222100000001122222 21111
Q ss_pred CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhH--HHHHHHHHhh--------------hcCCCCCCchh
Q 000815 413 SGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSA--VMLEQASYCY--------------LLSKPPMLHKY 475 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sA--lllEqaA~c~--------------l~~~~p~~RK~ 475 (1269)
.......+..+..+..+...|.+++|...+-+.....+ -... .++.++..+- +. ..|.-..
T Consensus 257 ~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk-~~p~~~~- 334 (409)
T TIGR00540 257 RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK-NVDDKPK- 334 (409)
T ss_pred HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH-hCCCChh-
Confidence 00112345556667788899999999888877765432 1110 1222222211 11 1122222
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHH--HHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYR--SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~--~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+..+..-|.-+.+.|++..|...|. .++.... ...++..||..+..+|+.+.|.++..+
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-------~~~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-------DANDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1233344566667777777777666 3544432 122344789999999999999877655
No 73
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.23 E-value=64 Score=41.08 Aligned_cols=32 Identities=19% Similarity=0.138 Sum_probs=24.4
Q ss_pred CccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 510 TWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 510 ~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-|.-++-+=.+-|+++-..-|.++.|++-.+.
T Consensus 1015 ~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 1015 TWRGAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred hhhhHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 58888877777788877888888888865543
No 74
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=76.02 E-value=17 Score=43.63 Aligned_cols=186 Identities=17% Similarity=0.175 Sum_probs=93.8
Q ss_pred CccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHH--H
Q 000815 329 MYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFT--T 406 (1269)
Q Consensus 329 ~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~--~ 406 (1269)
.|..-..|.-|-|.+.+ +--|||+.|..+.+.+-+ .|.- .--|+|.-.|++-.+-.+..-.++.+|-|.|++ .
T Consensus 413 ~~~~la~dlei~ka~~~-lk~~d~~~aieilkv~~~---kdnk-~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr 487 (840)
T KOG2003|consen 413 QHAELAIDLEINKAGEL-LKNGDIEGAIEILKVFEK---KDNK-TASAAANNLCALRFLQGGKDFADAQQYADIALNIDR 487 (840)
T ss_pred hhhhhhhhhhhhHHHHH-HhccCHHHHHHHHHHHHh---ccch-hhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc
Confidence 35556777778887764 567999999999886654 2221 235677777766444333333566777777764 2
Q ss_pred HhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHH-----------HHHHHHhhhcCCCCCCch
Q 000815 407 YAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVM-----------LEQASYCYLLSKPPMLHK 474 (1269)
Q Consensus 407 Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAll-----------lEqaA~c~l~~~~p~~RK 474 (1269)
|.-.. ..--.-+--+.|.++.|+..+-.++.-+. +-.||+ ||+|-.||+.... -.|.
T Consensus 488 yn~~a----------~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~-il~n 556 (840)
T KOG2003|consen 488 YNAAA----------LTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA-ILLN 556 (840)
T ss_pred cCHHH----------hhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH-HHHh
Confidence 32110 00001111123445555544444443332 333332 3445555543211 1233
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHH
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 536 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av 536 (1269)
.+--++.-|+-|..-....+|+..|.++..+-.. .-.|+..||..+-.-|+-..|.
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~------dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPN------DPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC------CHHHHHHHHHHhhcccchhhhh
Confidence 3334445555555555555555555555555432 2344555555555555544444
No 75
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.88 E-value=51 Score=41.57 Aligned_cols=58 Identities=24% Similarity=0.323 Sum_probs=36.6
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
|---|+-|...|....|.|.|+.|+.+|.+- .. -+..||-.+-..|++++||.|+-+.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~p~~--aa----a~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVFPEF--AA----AHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhChhh--hh----hhhhHHHHHHhcccHHHHHHHHHHH
Confidence 4444666777777777777777777776532 11 2345666666677777777777663
No 76
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=75.71 E-value=12 Score=33.71 Aligned_cols=69 Identities=19% Similarity=0.139 Sum_probs=47.3
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhcccc-chhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHH
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDK-AWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTY 407 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dk-aw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y 407 (1269)
.+..||..++.+|+|+.|..+|+.+.+-++... .....|-+.-.+|.+...++. ..++..+++.|+..+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD-YEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhh
Confidence 567899999999999999999997765443322 334567777777777776542 234556777776654
No 77
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=75.53 E-value=16 Score=45.27 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=97.4
Q ss_pred HHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHH---HHHHhhcCCC
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENA---FTTYAKIGSS 413 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A---~~~Y~~~~~~ 413 (1269)
-.++-.||-+|-..+|+.- |++.-.+|..|. ++..|.=....|+.+.+..++ ++.-+ ...|=...-
T Consensus 245 dll~~~ad~~y~~c~f~~c---~kit~~lle~dp---fh~~~~~~~ia~l~el~~~n~----Lf~lsh~LV~~yP~~a~- 313 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKEC---LKITEELLEKDP---FHLPCLPLHIACLYELGKSNK----LFLLSHKLVDLYPSKAL- 313 (611)
T ss_pred HHHHHHHHHHHHcChHHHH---HHHhHHHHhhCC---CCcchHHHHHHHHHHhcccch----HHHHHHHHHHhCCCCCc-
Confidence 4677889999999999965 455666666665 344444444446666554332 11111 112222111
Q ss_pred chhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-hhhHHH-----------HHHHHHhhhcCCCCCCchhHHHHHH
Q 000815 414 GQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-LHSAVM-----------LEQASYCYLLSKPPMLHKYGFHLVL 481 (1269)
Q Consensus 414 ~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-l~sAll-----------lEqaA~c~l~~~~p~~RK~Af~~vL 481 (1269)
.-+|.=| .+-+.|.+++|-+.+-+.+..|+ .+-|-+ .|||-.||-.... -+++.-.=++.
T Consensus 314 -sW~aVg~------YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar-l~~G~hlP~LY 385 (611)
T KOG1173|consen 314 -SWFAVGC------YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR-LMPGCHLPSLY 385 (611)
T ss_pred -chhhHHH------HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH-hccCCcchHHH
Confidence 1333322 23334788888888887776554 222211 2344444432110 11122222444
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHhc
Q 000815 482 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKT 543 (1269)
Q Consensus 482 Ag~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~~ 543 (1269)
-|-.|..-+-.++|-+.|.+|+.+... ..-+.+.+|-.+|+.+.+..|+++|....
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~------Dplv~~Elgvvay~~~~y~~A~~~f~~~l 441 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPS------DPLVLHELGVVAYTYEEYPEALKYFQKAL 441 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCC------cchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence 455666666666666666666666543 23455667777777777777877776643
No 78
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=75.42 E-value=21 Score=42.75 Aligned_cols=85 Identities=12% Similarity=0.042 Sum_probs=59.6
Q ss_pred HHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 428 MLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 428 ~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.+...|.|.+|...+-+++..++-. +..+..-|..|.+.|....|+.+|.+|+.+..
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~-----------------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P 67 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNN-----------------------AELYADRAQANIKLGNFTEAVADANKAIELDP 67 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC-----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3344567777777776665443311 11123345556677889999999999999876
Q ss_pred CCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 508 GSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 508 ~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.. ...++.+|..++.+|++++|+.+|.+
T Consensus 68 ~~------~~a~~~lg~~~~~lg~~~eA~~~~~~ 95 (356)
T PLN03088 68 SL------AKAYLRKGTACMKLEEYQTAKAALEK 95 (356)
T ss_pred CC------HHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 32 33578999999999999999988766
No 79
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=74.46 E-value=30 Score=33.02 Aligned_cols=102 Identities=13% Similarity=0.114 Sum_probs=66.7
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
..-.+|...+-.|+|+.|...|+.+.+.+..+. +.+-+.-+.|.+++-.+. -..+..+++.+...|-. ..+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~-----~~~ 74 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPK-----SPK 74 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCC-----CCc
Confidence 346788999999999999999999987654332 334445556666655432 23344556555544421 123
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCc
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGE 448 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e 448 (1269)
...+.+..+.++...|.+++|...+-++...
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 3455666777788889999998888776643
No 80
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=74.18 E-value=16 Score=41.61 Aligned_cols=176 Identities=14% Similarity=0.017 Sum_probs=68.0
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCch
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
...+.+|+.+ ...+||+.|..+++..-+-+.+ ..++..+.+ + +........+...++.+.. ....
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~---~~~l~~~l~---~--~~~~~~~~~~~~~l~~~~~-~~~~----- 142 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERDGD---PRYLLSALQ---L--YYRLGDYDEAEELLEKLEE-LPAA----- 142 (280)
T ss_dssp --------------------------------------------H------HHHTT-HHHHHHHHHHHHH--T-------
T ss_pred cccccccccc-cccccccccccccccccccccc---cchhhHHHH---H--HHHHhHHHHHHHHHHHHHh-ccCC-----
Confidence 3456778888 7899999999887654333322 222222222 1 1222223445556665442 1111
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc----hhhHHHHHHHHHhhhcCCCC-------------CCchhHHH
Q 000815 416 QNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP----LHSAVMLEQASYCYLLSKPP-------------MLHKYGFH 478 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~----l~sAlllEqaA~c~l~~~~p-------------~~RK~Af~ 478 (1269)
....+..+..++++...|.+++|.+.+-+++..+| +..++++ .++..... ...-..+|
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~-----~li~~~~~~~~~~~l~~~~~~~~~~~~~~ 217 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAW-----LLIDMGDYDEAREALKRLLKAAPDDPDLW 217 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHH-----HHCTTCHHHHHHHHHHHHHHH-HTSCCHC
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH-----HHHHCCChHHHHHHHHHHHHHCcCHHHHH
Confidence 23356666777888889999999888877664332 4333332 22211100 00111244
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHH
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 538 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~h 538 (1269)
..+ |..|.+.|+...|+.+|..++....+ .--++..+|..+...|+.++|.+.
T Consensus 218 ~~l-a~~~~~lg~~~~Al~~~~~~~~~~p~------d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 218 DAL-AAAYLQLGRYEEALEYLEKALKLNPD------DPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp HHH-HHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT-----------
T ss_pred HHH-HHHhcccccccccccccccccccccc------cccccccccccccccccccccccc
Confidence 444 66788889999999999999987652 233456778888888999988753
No 81
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=73.89 E-value=14 Score=39.12 Aligned_cols=67 Identities=16% Similarity=0.202 Sum_probs=52.1
Q ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 472 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 472 ~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
.+++.. +..-|..|.+.|+...|+.||..++.......| ...+++.+|..+..+|+.+.|++++.+.
T Consensus 32 ~~~a~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 32 AKEAFV-YYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred hhhHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344433 455566778889999999999999998765543 2357899999999999999999988763
No 82
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=72.44 E-value=13 Score=32.65 Aligned_cols=61 Identities=28% Similarity=0.290 Sum_probs=42.7
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHH
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAF 404 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~ 404 (1269)
....+|..+|..|||+.|...|+.+.+- |+ ..+.+.-++|++++.++....++..+++.|+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~---~p---~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL---DP---NNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH---ST---THHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC---CCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 4678999999999999999999976652 11 2345677888888876532334445555554
No 83
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.39 E-value=63 Score=42.24 Aligned_cols=135 Identities=13% Similarity=0.017 Sum_probs=85.5
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCch
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
..-+|.||+...-+|.|+.|...|+.+.. |.-|. .++-..++ ..|.. ...+|+|...+.+.-...
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~-~~Pd~----~~a~~~~a---~~L~~------~~~~eeA~~~~~~~l~~~- 150 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ-RFPDS----SEAFILML---RGVKR------QQGIEAGRAEIELYFSGG- 150 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh-hCCCc----HHHHHHHH---HHHHH------hccHHHHHHHHHHHhhcC-
Confidence 45689999999999999999999998775 22222 22222211 11211 123444444333221111
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHH
Q 000815 416 QNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHA 495 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~A 495 (1269)
..-.....+.+.+|...|.|++|...+-|++.+++-.... ++-=|+.+.+-|+...|
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~-----------------------~~~~a~~l~~~G~~~~A 207 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENG-----------------------YVGWAQSLTRRGALWRA 207 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHH-----------------------HHHHHHHHHHcCCHHHH
Confidence 1223455666788888999999998888876544311111 33447788889999999
Q ss_pred HHHHHHHHHhhcC
Q 000815 496 IRTYRSAVSVYKG 508 (1269)
Q Consensus 496 lrCy~~a~~vY~~ 508 (1269)
..+|+.|+.....
T Consensus 208 ~~~~~~a~~~~~~ 220 (694)
T PRK15179 208 RDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHhhCc
Confidence 9999999998764
No 84
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=71.27 E-value=16 Score=33.33 Aligned_cols=52 Identities=19% Similarity=0.240 Sum_probs=41.0
Q ss_pred ecCCCeEEEEEccCCccccCCcEEEEEEEEEecCccccceEEEEecCCceEE
Q 000815 769 IKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLS 820 (1269)
Q Consensus 769 ~~~~P~Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~ 820 (1269)
...-+.+.+.-..-+..+.-||....+|+++|.|..++.++.+.=.-|.-+.
T Consensus 20 ~~~~~~~~~~k~~~~~~~~~Gd~v~ytitvtN~G~~~a~nv~v~D~lp~g~~ 71 (76)
T PF01345_consen 20 VVAIPDLSITKTVNPSTANPGDTVTYTITVTNTGPAPATNVVVTDTLPAGLT 71 (76)
T ss_pred ccCCCCEEEEEecCCCcccCCCEEEEEEEEEECCCCeeEeEEEEEcCCCCCE
Confidence 3444666666666677889999999999999999999999998876554433
No 85
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.12 E-value=7.6 Score=48.35 Aligned_cols=164 Identities=19% Similarity=0.117 Sum_probs=79.2
Q ss_pred HhhhHHHHhhCHHHHHHHHHHH-hhhhccccchhhhhchHHHH-----HHHHHh---c-cCC----hhH------HHHHH
Q 000815 341 ILGDYAFMLRDYELALSNYRLI-STDYKLDKAWKRYAGVQEMM-----GLTYFM---L-DQS----RKE------AEYCM 400 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~~l-~~Df~~Dkaw~~~A~a~EM~-----als~ll---~-~~~----~~~------~~~~l 400 (1269)
.||...=--|++..|+..|+.. +.+=+.-.||.-+|+|+--. |+-.+. + ++. +.+ .+-.+
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl 200 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRL 200 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhccc
Confidence 3555555567888889999843 33333336887777665321 111111 1 110 111 22346
Q ss_pred HHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc-----------Cc-hhhHHHHHHHHHhhhcCC
Q 000815 401 ENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE-----------EP-LHSAVMLEQASYCYLLSK 468 (1269)
Q Consensus 401 e~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e-----------~~-l~sAlllEqaA~c~l~~~ 468 (1269)
++|...|++.-...+.+|+--. -.+-.+...|..-+|...+..+..- ++ +..|....+|-.||++.-
T Consensus 201 ~ea~~cYlkAi~~qp~fAiaws-nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl 279 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWS-NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRAL 279 (966)
T ss_pred chhHHHHHHHHhhCCceeeeeh-hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHH
Confidence 7788888765321112221100 0112334444444444444333321 23 455667778888887631
Q ss_pred CCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhh
Q 000815 469 PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVY 506 (1269)
Q Consensus 469 ~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY 506 (1269)
.-+ --+|.-.---|--|...|+..+|++||++|+.+=
T Consensus 280 ~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 280 NLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred hcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 100 0111101111225667778888888888887763
No 86
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=70.88 E-value=78 Score=39.40 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=61.3
Q ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 472 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 472 ~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-+.++|++.+|..+...|+...|+.+|..|.. ....|..+..-..+.+|-.+..+++.++|..++.+
T Consensus 263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~--~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIE--SQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhcc--chhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 358999999999999999999999999998883 24679999988899999999999999999988776
No 87
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=70.66 E-value=97 Score=42.23 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=38.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
...|.-+.+.|....|+.+|.+++..-.+.. .++..||..+..+|+.++|+.++-+
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~------~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEPNNS------NYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3445677777777777777777777765422 4667777777777777777776654
No 88
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=70.66 E-value=1.1e+02 Score=38.59 Aligned_cols=189 Identities=15% Similarity=0.128 Sum_probs=106.3
Q ss_pred hHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCc
Q 000815 335 IESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSG 414 (1269)
Q Consensus 335 ~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~ 414 (1269)
-..-+-+.|++++-||+++.|..+|+.|-+. |...|.||.|-.+-.++-.-+..........++++--..|-++.
T Consensus 37 k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~--- 111 (517)
T PF12569_consen 37 KLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSD--- 111 (517)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcccc---
Confidence 3456788899999999999999999966553 44678899888886665552211122233344444444443332
Q ss_pred hhhHHHHHHHHHHHHHhcCchHHHHH-HHHHHhCc--------------CchhhHHHHHHHHHhhhcCC--CC-------
Q 000815 415 QQNATRCGLWWVEMLKARHQYKDAAT-VYFRICGE--------------EPLHSAVMLEQASYCYLLSK--PP------- 470 (1269)
Q Consensus 415 ~~~A~R~~ll~~e~l~~~~~~~eaa~-~l~r~~~e--------------~~l~sAlllEqaA~c~l~~~--~p------- 470 (1269)
..-|..|.... -..+.+.+. ++.+.+.. ++-. +-++|++..-|...- .+
T Consensus 112 --~~~rl~L~~~~----g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K-~~~i~~l~~~~~~~l~~~~~~~~~~~ 184 (517)
T PF12569_consen 112 --APRRLPLDFLE----GDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK-AAIIESLVEEYVNSLESNGSFSNGDD 184 (517)
T ss_pred --chhHhhcccCC----HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH-HHHHHHHHHHHHHhhcccCCCCCccc
Confidence 11222221111 011333222 22222211 1111 223444444444321 00
Q ss_pred ---CCchhHHH-HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 471 ---MLHKYGFH-LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 471 ---~~RK~Af~-~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
..-....| +.+.|..|...|+...|+.....|+..=. -.--++...||.+-..|+++.|.+.+-.
T Consensus 185 ~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~ 253 (517)
T PF12569_consen 185 EEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDE 253 (517)
T ss_pred cccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 11122222 44567778889999999999988887632 2234788899999999999998765543
No 89
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=70.65 E-value=1.9e+02 Score=32.68 Aligned_cols=185 Identities=10% Similarity=0.064 Sum_probs=117.2
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCch
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
+...=..|--++.-|||+.|...|+.+.+.|... . +..-++=|.|.+++-++. -.++..+++..+..|=+....
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~--~a~~a~l~la~ayy~~~~-y~~A~~~~e~fi~~~P~~~~~-- 105 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-P--YSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNI-- 105 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-h--HHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCcCCCch--
Confidence 3334346777788899999999999999988744 3 344446678888886543 223445666666666444322
Q ss_pred hhHHH-HHHHHHHHH----H---h-----cCc--hHHHHHHHHHHhCc--CchhhHHHHHHHHHhhhcCCCCCCchhHHH
Q 000815 416 QNATR-CGLWWVEML----K---A-----RHQ--YKDAATVYFRICGE--EPLHSAVMLEQASYCYLLSKPPMLHKYGFH 478 (1269)
Q Consensus 416 ~~A~R-~~ll~~e~l----~---~-----~~~--~~eaa~~l~r~~~e--~~l~sAlllEqaA~c~l~~~~p~~RK~Af~ 478 (1269)
-+|.- -++-..++- . . ++. ..+|...+-+.... ++-......++...|. .+-|-|
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~--------~~la~~ 177 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLK--------DRLAKY 177 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHH--------HHHHHH
Confidence 22211 111111110 0 0 011 12333444444433 2233445555555542 466677
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHH
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 537 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~ 537 (1269)
-+..|.-|.+-|...-|+.=++.++.-|.+... .+-..+.|+..+..+|..+.|-.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~---~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQA---TRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHHcCChHHHHH
Confidence 778899999999999999999999999998875 66677889999999999999854
No 90
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=70.53 E-value=1.8e+02 Score=35.28 Aligned_cols=190 Identities=9% Similarity=0.032 Sum_probs=104.1
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCC
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSS 413 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~ 413 (1269)
.|-...--.|..+...|||+.|..+|+.+.+...... + +.++.+.-..+.......+...++.+ .+..+.
T Consensus 116 ~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-~-----~~~l~~a~l~l~~g~~~~Al~~l~~~----~~~~P~ 185 (398)
T PRK10747 116 QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-L-----PVEITRVRIQLARNENHAARHGVDKL----LEVAPR 185 (398)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-H-----HHHHHHHHHHHHCCCHHHHHHHHHHH----HhcCCC
Confidence 4555566668888999999999999998887554332 1 12333222222222222233333332 222211
Q ss_pred chhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc-----hh----hH--HHHHHHHH--------hhhcCCCCCCch
Q 000815 414 GQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP-----LH----SA--VMLEQASY--------CYLLSKPPMLHK 474 (1269)
Q Consensus 414 ~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~-----l~----sA--lllEqaA~--------c~l~~~~p~~RK 474 (1269)
...+++ +.++++...|+|++|...|-++..... +. .+ .++.+++. -+...-|...|+
T Consensus 186 -~~~al~---ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 186 -HPEVLR---LAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred -CHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 133333 335666777999998877665543211 11 11 11211111 111112223344
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccc----hH-------------------------HHHHHHHHHH
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSH----IK-------------------------DHVHFHIGQW 525 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~----i~-------------------------dhi~~~Lgr~ 525 (1269)
..--.+..|..+.++|+...|..-...++.. .|.. +. -.++..+||.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR----QYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4444566788899999999999988887762 2221 00 1246677888
Q ss_pred HHHhCCHHHHHHHHHH
Q 000815 526 YAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 526 ~~~Lg~~~~Av~hll~ 541 (1269)
+...|+++.|.++|-.
T Consensus 338 ~~~~~~~~~A~~~le~ 353 (398)
T PRK10747 338 LMKHGEWQEASLAFRA 353 (398)
T ss_pred HHHCCCHHHHHHHHHH
Confidence 8888888888777754
No 91
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=70.22 E-value=58 Score=39.59 Aligned_cols=85 Identities=15% Similarity=0.176 Sum_probs=53.3
Q ss_pred HHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000815 425 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVS 504 (1269)
Q Consensus 425 ~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~ 504 (1269)
.+.++...+.-.+|.+.+-+.+.+.+-.+.||.+||.+ +.+.++...|+.+.++|..
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f-----------------------Ll~k~~~~lAL~iAk~av~ 262 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF-----------------------LLSKKKYELALEIAKKAVE 262 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----------------------HHhcCCHHHHHHHHHHHHH
Confidence 34444444444455555444443333334455555555 3444556889999999999
Q ss_pred hhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHH
Q 000815 505 VYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 538 (1269)
Q Consensus 505 vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~h 538 (1269)
..... ---.+.|++.+..+|++++|+.-
T Consensus 263 lsP~~------f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 263 LSPSE------FETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred hCchh------HHHHHHHHHHHHhcCCHHHHHHH
Confidence 87643 22347899999999999999843
No 92
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=69.84 E-value=39 Score=33.50 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=61.1
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHH
Q 000815 422 GLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRS 501 (1269)
Q Consensus 422 ~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~ 501 (1269)
.+..+..+...|.+.+|..++.++...++ .. .-.....|..|.+.|+...|..+|.+
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--------------------~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP--------------------YN---SRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC--------------------Cc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556667888888777655543222 10 11122345566666778889999999
Q ss_pred HHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 502 AVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 502 a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
++..... ....++.+|..+..+|+.+.|++++..
T Consensus 77 ~~~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~ 110 (135)
T TIGR02552 77 AAALDPD------DPRPYFHAAECLLALGEPESALKALDL 110 (135)
T ss_pred HHhcCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9887543 344557899999999999999988765
No 93
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=69.81 E-value=9.5 Score=33.25 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=41.2
Q ss_pred HhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 487 KKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 487 ~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.+.|+...|+..|..++..+.+ ...+.+.|++.+...|+++.|.+.+-.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~ 50 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD------NPEARLLLAQCYLKQGQYDEAEELLER 50 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3578889999999999999876 566778999999999999999887754
No 94
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.34 E-value=38 Score=36.42 Aligned_cols=106 Identities=23% Similarity=0.203 Sum_probs=68.2
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
+++=.-++.|||++.=.||++.|...|.-++..-.+.+ ..+--+.-++-++.++.+ ...+..+++.|-..-...+.
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~--~~id~~l~~irv~i~~~d--~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG--HKIDMCLNVIRVAIFFGD--WSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH--HHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHhccch
Confidence 46667788999999999999999999999665332222 123345566678888753 23455677777655555431
Q ss_pred CchhhHHHHHHHHHHHH--HhcCchHHHHHHHHHHh
Q 000815 413 SGQQNATRCGLWWVEML--KARHQYKDAATVYFRIC 446 (1269)
Q Consensus 413 ~~~~~A~R~~ll~~e~l--~~~~~~~eaa~~l~r~~ 446 (1269)
...|.-|-.++.+ -..+.|.+||..++...
T Consensus 109 ----~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 109 ----WERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred ----HHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 3333333333333 34678999999988654
No 95
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.30 E-value=21 Score=39.61 Aligned_cols=68 Identities=18% Similarity=0.105 Sum_probs=50.3
Q ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC-------CCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 474 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-------STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 474 K~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~-------~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+.|.-++-.|.-|...|......+++..|+..|.. ..=..-+.-|.+-+|-..+.+|+.++|++.|.+
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~ 190 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSR 190 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 44555556667777777777777777777776653 223445567899999999999999999999976
No 96
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=68.88 E-value=2.4e+02 Score=33.35 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=98.0
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhH-HHHHHHHHHHHHhhcCCCc
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKE-AEYCMENAFTTYAKIGSSG 414 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~-~~~~le~A~~~Y~~~~~~~ 414 (1269)
|.-+|.|.-+|=--+||+.|..+-+-+-+- ++--...-=||-.|=++.-....+.-+ +...+..|...=-
T Consensus 141 ~~AlqqLl~IYQ~treW~KAId~A~~L~k~---~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~------ 211 (389)
T COG2956 141 EGALQQLLNIYQATREWEKAIDVAERLVKL---GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK------ 211 (389)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHc---CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc------
Confidence 445666666777777777777776633321 111111222333333333322211111 1223333322221
Q ss_pred hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchH
Q 000815 415 QQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINH 494 (1269)
Q Consensus 415 ~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~ 494 (1269)
.-.|+.++...+....|.|..|...+-++...++-.-..++|....||- +.|+...
T Consensus 212 --~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~----------------------~lg~~~~ 267 (389)
T COG2956 212 --KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA----------------------QLGKPAE 267 (389)
T ss_pred --cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH----------------------HhCCHHH
Confidence 2369999999999999999999999999998888666788898888875 4566777
Q ss_pred HHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 495 AIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 495 AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
++-.++.+.+.|.|.. +...|.+......=.+.|...+-+
T Consensus 268 ~~~fL~~~~~~~~g~~-------~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 268 GLNFLRRAMETNTGAD-------AELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHHHHHHHHccCCcc-------HHHHHHHHHHHhhChHHHHHHHHH
Confidence 7888888888887654 233344443334444455444433
No 97
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=68.77 E-value=28 Score=31.97 Aligned_cols=67 Identities=27% Similarity=0.392 Sum_probs=40.3
Q ss_pred ccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeE-E
Q 000815 622 VAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDI-S 700 (1269)
Q Consensus 622 vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i-~ 700 (1269)
..||.+.+.+.++|.-..++ .+++|.++. ++.... ......+ .
T Consensus 2 ~~G~~~~~~~tv~N~g~~~~--~~v~~~l~~-P~GW~~---------------------------------~~~~~~~~~ 45 (78)
T PF10633_consen 2 TPGETVTVTLTVTNTGTAPL--TNVSLSLSL-PEGWTV---------------------------------SASPASVPS 45 (78)
T ss_dssp -TTEEEEEEEEEE--SSS-B--SS-EEEEE---TTSE------------------------------------EEEEE--
T ss_pred CCCCEEEEEEEEEECCCCce--eeEEEEEeC-CCCccc---------------------------------cCCcccccc
Confidence 36999999999999987764 677777665 432210 0111122 7
Q ss_pred EcCCceEEEEEEEEeCce---eEEEEE
Q 000815 701 LGGAETILVQLMVTPKVE---GILKIV 724 (1269)
Q Consensus 701 L~p~Etk~v~L~~~P~~~---G~L~I~ 724 (1269)
|.|++++.+.+.++|... |...|.
T Consensus 46 l~pG~s~~~~~~V~vp~~a~~G~y~v~ 72 (78)
T PF10633_consen 46 LPPGESVTVTFTVTVPADAAPGTYTVT 72 (78)
T ss_dssp B-TTSEEEEEEEEEE-TT--SEEEEEE
T ss_pred CCCCCEEEEEEEEECCCCCCCceEEEE
Confidence 999999999999999864 887764
No 98
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=68.55 E-value=15 Score=35.53 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=35.0
Q ss_pred CcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCC
Q 000815 789 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 868 (1269)
Q Consensus 789 GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~p 868 (1269)
+......|.|+|.+..++. .++++++|..+.+ -|..+.|.|
T Consensus 17 ~~~~~~~l~l~N~s~~~i~-fKiktt~~~~y~v--------------------------------------~P~~G~i~p 57 (109)
T PF00635_consen 17 NKQQSCELTLTNPSDKPIA-FKIKTTNPNRYRV--------------------------------------KPSYGIIEP 57 (109)
T ss_dssp SS-EEEEEEEEE-SSSEEE-EEEEES-TTTEEE--------------------------------------ESSEEEE-T
T ss_pred CceEEEEEEEECCCCCcEE-EEEEcCCCceEEe--------------------------------------cCCCEEECC
Confidence 6679999999999986543 3555555433221 244468999
Q ss_pred CCeEEEEEEEEec
Q 000815 869 ETPLLWPLWYRAA 881 (1269)
Q Consensus 869 Ges~~~plwlra~ 881 (1269)
|+++++.|++++.
T Consensus 58 ~~~~~i~I~~~~~ 70 (109)
T PF00635_consen 58 GESVEITITFQPF 70 (109)
T ss_dssp TEEEEEEEEE-SS
T ss_pred CCEEEEEEEEEec
Confidence 9999999999985
No 99
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=68.45 E-value=12 Score=42.39 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=55.2
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHH
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCM 400 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~l 400 (1269)
......-.||..+|.+|||+.|...|+.+...|..++=|.-.+.+..+..-|....+.....+...+
T Consensus 176 ~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 176 MASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 4455677999999999999999999999999999999888888889999999888765444443333
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.24 E-value=54 Score=39.59 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCH
Q 000815 477 FHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMH 532 (1269)
Q Consensus 477 f~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~ 532 (1269)
-|.+|-|.-|.+.|..+.|+..|++.+.-|. .=.|.+.| |.|.+..||..
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfp-----edldclkf-lvri~~dlgl~ 710 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFP-----EDLDCLKF-LVRIAGDLGLK 710 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCc-----cchHHHHH-HHHHhccccch
Confidence 5888899999999999999998888887664 33455544 66777777743
No 101
>smart00809 Alpha_adaptinC2 Adaptin C-terminal domain. Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. Gamma-adaptin is a subunit of the golgi adaptor. Alpha adaptin is a heterotetramer that regulates clathrin-bud formation. The carboxyl-terminal appendage of the alpha subunit regulates translocation of endocytic accessory proteins to the bud site. This Ig-fold domain is found in alpha, beta and gamma adaptins and consists of a beta-sandwich containing 7 strands in 2 beta-sheets in a greek-key topology PUBMED:10430869, PUBMED:12176391. The adaptor appendage contains an additional N-terminal strand.
Probab=67.85 E-value=44 Score=32.16 Aligned_cols=74 Identities=16% Similarity=0.225 Sum_probs=54.9
Q ss_pred CcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCC
Q 000815 789 GDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQG 868 (1269)
Q Consensus 789 GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~p 868 (1269)
+...++.+.+.|.+..+++++.+.+.-|.++.+-- .-+.+..|.|
T Consensus 17 ~~~~~i~~~~~N~s~~~it~f~~~~avpk~~~l~l-----------------------------------~~~s~~~l~p 61 (104)
T smart00809 17 PGLIRITLTFTNKSPSPITNFSFQAAVPKSLKLQL-----------------------------------QPPSSPTLPP 61 (104)
T ss_pred CCeEEEEEEEEeCCCCeeeeEEEEEEcccceEEEE-----------------------------------cCCCCCccCC
Confidence 44578999999999999999999887665432110 0112236889
Q ss_pred CCeEEEEEEEEecCCceeEEEEEEEEecC
Q 000815 869 ETPLLWPLWYRAAVPGKISLSITIYYEMG 897 (1269)
Q Consensus 869 Ges~~~plwlra~~~G~~~l~~LfyYe~~ 897 (1269)
|+.++..+.+.++..+...+++.+.|.-+
T Consensus 62 ~~~i~q~~~i~~~~~~~~~~~~~vsy~~~ 90 (104)
T smart00809 62 GGQITQVLKVENPGKFPLRLRLRLSYLLG 90 (104)
T ss_pred CCCEEEEEEEECCCCCCEEEEEEEEEEEC
Confidence 99999999999988777788888877654
No 102
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=67.39 E-value=61 Score=30.36 Aligned_cols=68 Identities=29% Similarity=0.351 Sum_probs=45.1
Q ss_pred CccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeee
Q 000815 619 NICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVD 698 (1269)
Q Consensus 619 ~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 698 (1269)
.....|+++.|.+.++|-=... ..++.+.+.... . ......
T Consensus 13 ~~~~~g~~~~i~~~V~N~G~~~--~~~~~v~~~~~~--~-----------------------------------~~~~~~ 53 (101)
T PF07705_consen 13 SNVVPGEPVTITVTVKNNGTAD--AENVTVRLYLDG--N-----------------------------------SVSTVT 53 (101)
T ss_dssp SEEETTSEEEEEEEEEE-SSS---BEEEEEEEEETT--E-----------------------------------EEEEEE
T ss_pred CcccCCCEEEEEEEEEECCCCC--CCCEEEEEEECC--c-----------------------------------eeccEE
Confidence 3556899999999999976665 555555543311 0 012235
Q ss_pred E-EEcCCceEEEEEEEEeCceeEEEEEE
Q 000815 699 I-SLGGAETILVQLMVTPKVEGILKIVG 725 (1269)
Q Consensus 699 i-~L~p~Etk~v~L~~~P~~~G~L~I~G 725 (1269)
| .|.|++++++.+.+++..+|..+|.-
T Consensus 54 i~~L~~g~~~~v~~~~~~~~~G~~~i~~ 81 (101)
T PF07705_consen 54 IPSLAPGESETVTFTWTPPSPGSYTIRV 81 (101)
T ss_dssp ESEB-TTEEEEEEEEEE-SS-CEEEEEE
T ss_pred ECCcCCCcEEEEEEEEEeCCCCeEEEEE
Confidence 6 89999999999999999999888653
No 103
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=66.83 E-value=43 Score=30.75 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=49.0
Q ss_pred hhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHH
Q 000815 349 LRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEM 428 (1269)
Q Consensus 349 l~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~ 428 (1269)
-|+|+.|...|+.+...-..+. -....-+.|.|++.++. .+.|+..+.+.. .. ..-.++..+.+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~----~~~~~~~la~~~~~~~~--------y~~A~~~~~~~~-~~-~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP----NSAYLYNLAQCYFQQGK--------YEEAIELLQKLK-LD-PSNPDIHYLLARC 67 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH----HHHHHHHHHHHHHHTTH--------HHHHHHHHHCHT-HH-HCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCCh----hHHHHHHHHHHHHHCCC--------HHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Confidence 4899999999998776554321 12234567888887652 233433342211 11 1124555566899
Q ss_pred HHhcCchHHHHHHHHH
Q 000815 429 LKARHQYKDAATVYFR 444 (1269)
Q Consensus 429 l~~~~~~~eaa~~l~r 444 (1269)
+-..|.|++|...|-+
T Consensus 68 ~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHTT-HHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhc
Confidence 9999999999887755
No 104
>PRK14574 hmsH outer membrane protein; Provisional
Probab=66.82 E-value=2.5e+02 Score=37.60 Aligned_cols=181 Identities=10% Similarity=-0.049 Sum_probs=107.1
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
+.+-.|=+.|--|||+.|+..|+.+-+...+..+ ++.+++.+...+ ....++..+++.|. .. . ..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~-----av~dll~l~~~~--G~~~~A~~~~eka~----~p-~---n~ 100 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSG-----QVDDWLQIAGWA--GRDQEVIDVYERYQ----SS-M---NI 100 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchh-----hHHHHHHHHHHc--CCcHHHHHHHHHhc----cC-C---CC
Confidence 5566667788889999999999988876654321 122444444333 22234555666554 11 1 23
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCC------------CCCchhHHHHHHHHHH
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKP------------PMLHKYGFHLVLSGDR 485 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~------------p~~RK~Af~~vLAg~r 485 (1269)
..+..+..+.+++..|+|++|...+-+++..+|=-..+++.. |..|+.... +..-+ ..+.++-+.-
T Consensus 101 ~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gL-a~~y~~~~q~~eAl~~l~~l~~~dp~-~~~~l~layL 178 (822)
T PRK14574 101 SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGM-IMTQADAGRGGVVLKQATELAERDPT-VQNYMTLSYL 178 (822)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHhhcCCHHHHHHHHHHhcccCcc-hHHHHHHHHH
Confidence 345555567788888999999999988887654212222222 343443321 11111 2223444555
Q ss_pred HHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 486 YKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 486 y~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+...+....|+..|++++....+. .-+...+.+.+..+|-...|.+++..
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n------~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTS------EEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 555565555999999998887643 34455666677777777777665543
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=66.58 E-value=80 Score=31.86 Aligned_cols=98 Identities=12% Similarity=0.106 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHH
Q 000815 421 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 500 (1269)
Q Consensus 421 ~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~ 500 (1269)
+.+-.+..+.+.|..++|...+-+....+ + .+..|+-+ ++--|.-|...|+...|+.-+.
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g-L-----------------~~~~~~~a--~i~lastlr~LG~~deA~~~L~ 62 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAG-L-----------------SGADRRRA--LIQLASTLRNLGRYDEALALLE 62 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C-----------------CchHHHHH--HHHHHHHHHHcCCHHHHHHHHH
Confidence 34455677888899889888887765422 1 01112222 3456677889999999999999
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 501 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 501 ~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.+..-|.+..|... +..-++-..+++|+.++|+..++.
T Consensus 63 ~~~~~~p~~~~~~~---l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 63 EALEEFPDDELNAA---LRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHCCCccccHH---HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999988887543 334466688999999999998876
No 106
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=64.58 E-value=20 Score=31.72 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=44.5
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+.|.+.++...|+.|+..++..... .-.+++..|..++.+|+++.|++.|-.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~ 54 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLER 54 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHH
Confidence 5678899999999999999999765 455677899999999999999877655
No 107
>PRK12370 invasion protein regulator; Provisional
Probab=64.07 E-value=1.8e+02 Score=36.91 Aligned_cols=178 Identities=9% Similarity=-0.073 Sum_probs=92.8
Q ss_pred HHhhhHHHHhh---------CHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhc
Q 000815 340 RILGDYAFMLR---------DYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKI 410 (1269)
Q Consensus 340 RrLADlaFml~---------DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~ 410 (1269)
..||..++.++ +++.|...|+.+-+--- +.++ +.-+.|..+...+ ...++..+++.|+..
T Consensus 299 ~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~-----a~~~lg~~~~~~g-~~~~A~~~~~~Al~l---- 367 (553)
T PRK12370 299 CALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQ-----ALGLLGLINTIHS-EYIVGSLLFKQANLL---- 367 (553)
T ss_pred HHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHH-----HHHHHHHHHHHcc-CHHHHHHHHHHHHHh----
Confidence 56777666543 48899999886654221 1121 2223344444433 223445556655432
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchh--hHHHH----------HHHHHhhhcC---CCCCCchh
Q 000815 411 GSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLH--SAVML----------EQASYCYLLS---KPPMLHKY 475 (1269)
Q Consensus 411 ~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~--sAlll----------EqaA~c~l~~---~~p~~RK~ 475 (1269)
.++ .+ .+....+.++...|.+++|..++-++...+|.. ....+ |.|..+|... .+|..
T Consensus 368 ~P~---~~-~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~--- 440 (553)
T PRK12370 368 SPI---SA-DIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDN--- 440 (553)
T ss_pred CCC---CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccC---
Confidence 221 11 122334666777899999999998877655421 11110 2222222211 11111
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHH-HHHHHH
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA-VAHMLE 541 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~A-v~hll~ 541 (1269)
.....+.|.-|...|+...|...|..+...... .......|+..+..+|+-..+ ++.+++
T Consensus 441 ~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~a~~~l~~ll~ 501 (553)
T PRK12370 441 PILLSMQVMFLSLKGKHELARKLTKEISTQEIT------GLIAVNLLYAEYCQNSERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch------hHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 223455677788999999999998876555321 222335556665666643222 445544
No 108
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=61.43 E-value=1e+02 Score=40.22 Aligned_cols=25 Identities=28% Similarity=0.138 Sum_probs=22.8
Q ss_pred HHhhhHHHHhhCHHHHHHHHHHHhh
Q 000815 340 RILGDYAFMLRDYELALSNYRLIST 364 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~~ 364 (1269)
-|.|=|+.-||-.+.|...|+.++|
T Consensus 804 akvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 804 AKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 4788899999999999999999987
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=60.81 E-value=93 Score=33.97 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=67.3
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhc-cCC-hhHHHHHHHHHHHHHhhc
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFML-DQS-RKEAEYCMENAFTTYAKI 410 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~-~~~-~~~~~~~le~A~~~Y~~~ 410 (1269)
+.+| .-..||.++..+|+|+.|...|+.+.+-.-.+ +- +.=..|.+++.. ++. ..++..+++.|+ +.
T Consensus 71 ~~~~-~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-~~-----~~~~lA~aL~~~~g~~~~~~A~~~l~~al----~~ 139 (198)
T PRK10370 71 QNSE-QWALLGEYYLWRNDYDNALLAYRQALQLRGEN-AE-----LYAALATVLYYQAGQHMTPQTREMIDKAL----AL 139 (198)
T ss_pred CCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH-----HHHHHHHHHHHhcCCCCcHHHHHHHHHHH----Hh
Confidence 4455 35678999999999999999999777643322 21 111223333222 322 245555565553 33
Q ss_pred CCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc---CchhhHHHHHHHHH
Q 000815 411 GSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE---EPLHSAVMLEQASY 462 (1269)
Q Consensus 411 ~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e---~~l~sAlllEqaA~ 462 (1269)
.+. -.++..+.+-.+...|.|++|...+-+++.. +.=|.+++ |.+..
T Consensus 140 dP~----~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~ 189 (198)
T PRK10370 140 DAN----EVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV-ESINM 189 (198)
T ss_pred CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH-HHHHH
Confidence 221 1244455566666789999999988887653 23455555 65554
No 110
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=59.91 E-value=57 Score=39.05 Aligned_cols=97 Identities=14% Similarity=0.014 Sum_probs=60.0
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
.+.+.|.-+|.-|||+.|...|+.+.+-.-.+ +.+.-..|.+++.++ ...++..+++.|+...-. .
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g-~~~eAl~~~~~Al~l~P~---~---- 69 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLG-NFTEAVADANKAIELDPS---L---- 69 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcC---C----
Confidence 46788999999999999999999887644332 223344455555443 223444555555543211 1
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcC
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEE 449 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~ 449 (1269)
..+.+..+.++...|.|++|...+-+++..+
T Consensus 70 -~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 70 -AKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred -HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 1122333456667899999998887776543
No 111
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=59.71 E-value=1.6e+02 Score=37.81 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=37.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcC-----CCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYKG-----STWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~~-----~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-||+-|.|-.....|+.||+.--..-+. -.++.---.++..-|--....||++.||.||.+
T Consensus 666 kagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 666 KAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred hhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 3677777777777888887643222111 012222233444555555667999999999988
No 112
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=59.54 E-value=77 Score=32.40 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=52.2
Q ss_pred hhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHH
Q 000815 342 LGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRC 421 (1269)
Q Consensus 342 LADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~ 421 (1269)
||+.+|-.|||+.|...|+.+..+- .|..++..|- -..|-+++-++ + .|.|+..+..... ..+.-..
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~-~d~~l~~~a~--l~LA~~~~~~~----~----~d~Al~~L~~~~~--~~~~~~~ 120 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANA-PDPELKPLAR--LRLARILLQQG----Q----YDEALATLQQIPD--EAFKALA 120 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC-CCHHHHHHHH--HHHHHHHHHcC----C----HHHHHHHHHhccC--cchHHHH
Confidence 7888899999999999999888766 4454433221 11121111111 1 2334444333221 2344556
Q ss_pred HHHHHHHHHhcCchHHHHHHHHH
Q 000815 422 GLWWVEMLKARHQYKDAATVYFR 444 (1269)
Q Consensus 422 ~ll~~e~l~~~~~~~eaa~~l~r 444 (1269)
..+-+.++...|++++|...+-+
T Consensus 121 ~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 121 AELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Confidence 66778888888888888765543
No 113
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=59.09 E-value=2e+02 Score=33.13 Aligned_cols=104 Identities=11% Similarity=0.125 Sum_probs=71.0
Q ss_pred HHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCch
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
.......-++.+.-|||+.|...|+.+.+.|-++. |.+.|+.|.|-+++-.+. ..++..+++.++..|-...
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~---~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~---- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDST---YQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSP---- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCc---chHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCc----
Confidence 34455555666667999999999999999887543 677888999999987542 2344456666666664432
Q ss_pred hhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCc
Q 000815 416 QNATRCGLWWVEMLKARHQYKDAATVYFRICGE 448 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e 448 (1269)
.+--+.+..+.++...|++++|...+-++...
T Consensus 215 -~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 215 -KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred -chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33334444556676789999998887766543
No 114
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=58.84 E-value=26 Score=30.38 Aligned_cols=55 Identities=18% Similarity=0.280 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-|..|.+.|....|+.++..++..+.... .+++.+|..+...|+++.|++++..
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~ 59 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEK 59 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667778899999999999999876542 5778899999999999999998865
No 115
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.37 E-value=1.6e+02 Score=36.49 Aligned_cols=155 Identities=24% Similarity=0.338 Sum_probs=94.2
Q ss_pred hhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCCh-hHHHHHHHHHHHHHhhcCCCchhhHHHH
Q 000815 343 GDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSR-KEAEYCMENAFTTYAKIGSSGQQNATRC 421 (1269)
Q Consensus 343 ADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~-~~~~~~le~A~~~Y~~~~~~~~~~A~R~ 421 (1269)
|-+.|+|++|+.|..-|+-+.+ .|... -||-+ -+|.++-.+.+ .+....++++...+=+|. -|
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~---L~pe~-~~~~i----Ql~~a~Yr~~k~~~~m~~Fee~kkkFP~~~--------Ev 464 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAIS---LDPEN-AYAYI----QLCCALYRQHKIAESMKTFEEAKKKFPNCP--------EV 464 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh---cChhh-hHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--------hH
Confidence 4456889999999988886654 22211 12222 23333323322 234455555555554443 23
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHhCcCc------hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHH
Q 000815 422 GLWWVEMLKARHQYKDAATVYFRICGEEP------LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHA 495 (1269)
Q Consensus 422 ~ll~~e~l~~~~~~~eaa~~l~r~~~e~~------l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~A 495 (1269)
--+.+|+|.-+++++.|...+-....-++ +..+. ...|+.+ |+ +|. +....|
T Consensus 465 y~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p---------------lV~Ka~l--~~---qwk--~d~~~a 522 (606)
T KOG0547|consen 465 YNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP---------------LVHKALL--VL---QWK--EDINQA 522 (606)
T ss_pred HHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh---------------hhhhhHh--hh---chh--hhHHHH
Confidence 34678999999999999988765443221 22222 2233331 11 244 556778
Q ss_pred HHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 496 IRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 496 lrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+...+.|.++= .-.|.-.-+||..-...|+.++||..|-.
T Consensus 523 ~~Ll~KA~e~D------pkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 523 ENLLRKAIELD------PKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred HHHHHHHHccC------chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888773 34667778899999999999999987754
No 116
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=58.32 E-value=57 Score=33.55 Aligned_cols=93 Identities=14% Similarity=0.020 Sum_probs=53.8
Q ss_pred HHHhhhHHHHhhCHHHHHHHHHHHh-hhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhh
Q 000815 339 IRILGDYAFMLRDYELALSNYRLIS-TDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQN 417 (1269)
Q Consensus 339 ~RrLADlaFml~DY~~A~s~Y~~l~-~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~ 417 (1269)
...+|..++..|+|+.|...|+.+. .|-.+-.+|.. .|.++..++ -++.|+..|.+.-...+ .
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-------lg~~~~~~g--------~~~~A~~~y~~Al~l~p-~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIA-------LAGTWMMLK--------EYTTAINFYGHALMLDA-S 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH-------HHHHHHHHh--------hHHHHHHHHHHHHhcCC-C
Confidence 3457999999999999999999654 44433344432 233333322 23344444543321111 1
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICG 447 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~ 447 (1269)
-.....-.+.++...|.+++|...+-+.+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 123333445567778999999888877664
No 117
>PLN03218 maturation of RBCL 1; Provisional
Probab=57.72 E-value=4.2e+02 Score=36.65 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=14.1
Q ss_pred HHhhhHHHHhhCHHHHHHHHHHHh
Q 000815 340 RILGDYAFMLRDYELALSNYRLIS 363 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~ 363 (1269)
--|-+.+.-.|+++.|...|+...
T Consensus 476 nsLI~~y~k~G~vd~A~~vf~eM~ 499 (1060)
T PLN03218 476 TTLISTCAKSGKVDAMFEVFHEMV 499 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHH
Confidence 445555556666666666666544
No 118
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=57.48 E-value=11 Score=27.69 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.2
Q ss_pred HHhhhHHHHhhCHHHHHHHHHHHhhhhc
Q 000815 340 RILGDYAFMLRDYELALSNYRLISTDYK 367 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~~Df~ 367 (1269)
=++|..++.+|||+.|..+|+.+.++|-
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 3689999999999999999999998874
No 119
>PF13584 BatD: Oxygen tolerance
Probab=56.81 E-value=3.8e+02 Score=33.30 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=52.0
Q ss_pred EEcCCceEEEE---EEEEeCceeEEEEEEEEEEEccce-eeee-cccccchhhhhcccCccccCCCCCceEEEEe--cC-
Q 000815 700 SLGGAETILVQ---LMVTPKVEGILKIVGVRWRLSGSL-VGVY-NFESNLVKKKIAKGRRKVKSSPSNDLKFIVI--KS- 771 (1269)
Q Consensus 700 ~L~p~Etk~v~---L~~~P~~~G~L~I~Gv~~~L~~~v-~g~~-~F~~~g~rl~~tk~r~~~~~~pd~rL~~~V~--~~- 771 (1269)
.+.+..-..+. ..++|.++|.|+|.+..+.+.-.. .+.. -|.....+ .+..... ...++++|. |.
T Consensus 188 ~i~G~~y~~~~~~~~~l~P~ksG~l~I~~~~~~~~~~~~~~~~~~fg~~~~~-----~~~~~~~--s~~~~i~V~plP~~ 260 (484)
T PF13584_consen 188 RINGRRYRVIELRRYALFPQKSGTLTIPPATFEVTVSDPSGRRDFFGGNFGR-----SRPVSIS--SEPLTITVKPLPAE 260 (484)
T ss_pred EECCEEEEEEEEEEEEEEeCCceeEEecCEEEEEEEecccCccCcccccccc-----ceeEEec--CCCeEEEeccCCcc
Confidence 45554444444 689999999999998888774321 1111 11111000 0000011 122455553 22
Q ss_pred ------CCe---EEEEEccCCccccCCcEEEEEEEEEecCccc
Q 000815 772 ------LPK---LEGLIHPLPERAYAGDLRHLVLELKNQSDFS 805 (1269)
Q Consensus 772 ------~P~---Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~p 805 (1269)
.|. +++...--|..+-.||-...+|+|+=.|..+
T Consensus 261 ~~p~~f~~aVg~f~l~~~~~~~~~~~Ge~vt~ti~i~g~Gn~~ 303 (484)
T PF13584_consen 261 GAPADFSGAVGNFSLSQSWDPTEVKVGEPVTRTITISGEGNLP 303 (484)
T ss_pred cCCCCcccceeEEEEEEEcCcccccCCCeEEEEEEEEEEcchh
Confidence 122 3333322356788999999999888777633
No 120
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=56.37 E-value=14 Score=28.63 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.6
Q ss_pred HHhhhHHHHhhCHHHHHHHHHH
Q 000815 340 RILGDYAFMLRDYELALSNYRL 361 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~ 361 (1269)
-.||++++-+|||+.|.++|+.
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 4799999999999999999996
No 121
>PLN03077 Protein ECB2; Provisional
Probab=56.36 E-value=3.7e+02 Score=36.09 Aligned_cols=63 Identities=10% Similarity=0.056 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 473 HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 473 RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-...|..++.| |.++|....|.+.|..+...|.-... ...+..|...+.+.|++++|.+.+-+
T Consensus 588 d~~T~~~ll~a--~~~~g~v~ea~~~f~~M~~~~gi~P~----~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 588 DEVTFISLLCA--CSRSGMVTQGLEYFHSMEEKYSITPN----LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred CcccHHHHHHH--HhhcChHHHHHHHHHHHHHHhCCCCc----hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34556677765 88999999999999988877764442 23457788888889999999876643
No 122
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=56.35 E-value=93 Score=40.89 Aligned_cols=59 Identities=24% Similarity=0.322 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-||..+ |+...+.|....|.-||.+|++. +...|..+.+.. ..+-++|+...|..-++.
T Consensus 208 e~W~~l-adls~~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers-----~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 208 ELWKRL-ADLSEQLGNINQARYCYSRAIQA-NPSNWELIYERS-----SLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred HHHHHH-HHHHHhcccHHHHHHHHHHHHhc-CCcchHHHHHHH-----HHHHHhChHHHHHHHHHH
Confidence 555444 56788899999999999999986 556688876653 356678888888765554
No 123
>PF14646 MYCBPAP: MYCBP-associated protein family
Probab=55.55 E-value=71 Score=39.27 Aligned_cols=91 Identities=10% Similarity=0.012 Sum_probs=57.1
Q ss_pred eEEEEEccCCccccCCcEEEEEEE-EEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCC
Q 000815 774 KLEGLIHPLPERAYAGDLRHLVLE-LKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNK 852 (1269)
Q Consensus 774 ~Lev~~~~~P~~ll~GEi~~~~l~-L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~ 852 (1269)
.+.+.|.. ..||...=.|. |.|.|+..|.-=|.....+ -.+++.. . ..
T Consensus 236 ~~~l~Fe~-----~p~e~~~~~v~~l~N~Gt~~I~y~W~~~~~~--~~~~~~~----------~--------------~~ 284 (426)
T PF14646_consen 236 SIRLTFEC-----HPGERVSKEVVRLENNGTTAIYYSWRRVPFF--KNFGSLF----------R--------------AQ 284 (426)
T ss_pred ceEEEEEc-----ccCceeeEEEEEEecCCceEEEEEEEecccc--cccchhc----------c--------------cc
Confidence 34455544 67888888888 9999998776555555422 1111100 0 00
Q ss_pred CCCceeccCCCcccCCCCeEEEEEEEEecCCceeEEEEEEEEec
Q 000815 853 MPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEM 896 (1269)
Q Consensus 853 ~~~~v~~~p~~~~L~pGes~~~plwlra~~~G~~~l~~LfyYe~ 896 (1269)
...-.|.- ..+.|.||++..++||++...+|...=.|.+.-.+
T Consensus 285 ~~~F~Fd~-~~gvilPGe~~~~~~~F~s~~~Gif~E~W~L~t~P 327 (426)
T PF14646_consen 285 DQRFYFDT-SSGVILPGETRNFPFMFKSRKVGIFKERWELRTFP 327 (426)
T ss_pred CCeEEEeC-CCCEECCCceEEEEEEEeCCCceEEEEEEEEEEec
Confidence 01123332 23589999999999999999999777777666543
No 124
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=55.05 E-value=1.1e+02 Score=35.16 Aligned_cols=87 Identities=15% Similarity=0.222 Sum_probs=57.1
Q ss_pred HHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHH
Q 000815 399 CMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFH 478 (1269)
Q Consensus 399 ~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~ 478 (1269)
.++..+..|=+. .|+--+-.+.++++...|.+++|...+-++... -|...|..--
T Consensus 165 af~~fl~~yP~s-----~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--------------------yP~s~~~~dA 219 (263)
T PRK10803 165 AFQNFVKKYPDS-----TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--------------------YPKSPKAADA 219 (263)
T ss_pred HHHHHHHHCcCC-----cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------------CCCCcchhHH
Confidence 444444444322 455556678889999999999988776666532 1222333333
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCC
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGST 510 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~ 510 (1269)
+...|.-|.+.|+...|...|..+...|.+..
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 44445566778899999999999999998653
No 125
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=53.50 E-value=56 Score=34.22 Aligned_cols=61 Identities=15% Similarity=0.171 Sum_probs=48.2
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
+..-|..+...|+...|+.+|+.|+.+..+.. ....+++.||..+..+|+.+.|++.+...
T Consensus 38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~---~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY---DRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhccccch---hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34446678888999999999999998864321 22347899999999999999999887653
No 126
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.38 E-value=22 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.262 Sum_probs=22.6
Q ss_pred HHHhhhHHHHhhCHHHHHHHHHHHhhh
Q 000815 339 IRILGDYAFMLRDYELALSNYRLISTD 365 (1269)
Q Consensus 339 ~RrLADlaFml~DY~~A~s~Y~~l~~D 365 (1269)
...||..++.+|+|+.|...|+.+.+=
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 568999999999999999999977653
No 127
>PLN03077 Protein ECB2; Provisional
Probab=53.08 E-value=3.6e+02 Score=36.17 Aligned_cols=48 Identities=21% Similarity=0.232 Sum_probs=35.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+.|.|||+...|.+.|..+ .-....+..|...+...|+.++|++.|-+
T Consensus 532 ~~y~k~G~~~~A~~~f~~~----------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 532 DLYVRCGRMNYAWNQFNSH----------EKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHHHcCCHHHHHHHHHhc----------CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6788888888887766654 12344566777888888999999887754
No 128
>PLN03218 maturation of RBCL 1; Provisional
Probab=52.63 E-value=2.9e+02 Score=38.23 Aligned_cols=56 Identities=9% Similarity=-0.070 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
.-.+.|.++|....|...|..+... ++. -....+..|...+...|++++|++.|-+
T Consensus 689 sLI~ay~k~G~~eeA~~lf~eM~~~----g~~-PdvvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 689 SLMGACSNAKNWKKALELYEDIKSI----KLR-PTVSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3346788999999999888877542 111 1335577888888889999999877654
No 129
>PF13584 BatD: Oxygen tolerance
Probab=52.26 E-value=1.7e+02 Score=36.40 Aligned_cols=86 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred ceEEEEEEEEeCceeEEEEEEEEEEEccceeeeecccccchhhhhcccCccccCCCCCceEEEEecCCCeEEEEEccCCc
Q 000815 705 ETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPE 784 (1269)
Q Consensus 705 Etk~v~L~~~P~~~G~L~I~Gv~~~L~~~v~g~~~F~~~g~rl~~tk~r~~~~~~pd~rL~~~V~~~~P~Lev~~~~~P~ 784 (1269)
......+.+.|+++|.++|-.+.+++.|...-...+.++-.. ........ .......-.|++.+ -+.
T Consensus 71 ~~~~~~~~l~p~~~G~~~IP~~~v~v~Gk~~~S~pi~i~V~~-----~~~~~~~~------~~~~~~~~~l~~~v--~~~ 137 (484)
T PF13584_consen 71 SSTTYTYTLQPKKTGTFTIPPFTVEVDGKTYKSQPITIEVSK-----ASQSPSQP------PSNADDDVFLEAEV--SKK 137 (484)
T ss_pred EEEEEEEEEEecccceEEEceEEEEECCEEEeecCEEEEEEe-----cccCCccc------cccccccEEEEEEe--CCC
Confidence 567888999999999999999999997742212222221111 00000000 00011111223333 245
Q ss_pred cccCCcEEEEEEEEEecCc
Q 000815 785 RAYAGDLRHLVLELKNQSD 803 (1269)
Q Consensus 785 ~ll~GEi~~~~l~L~N~g~ 803 (1269)
.+|.||-..++++|.=...
T Consensus 138 ~~Yvge~v~lt~~ly~~~~ 156 (484)
T PF13584_consen 138 SVYVGEPVILTLRLYTRNN 156 (484)
T ss_pred ceecCCcEEEEEEEEEecC
Confidence 7899999999998876654
No 130
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=52.08 E-value=27 Score=33.98 Aligned_cols=74 Identities=8% Similarity=0.074 Sum_probs=46.8
Q ss_pred CccccCCcEEEEEEEEEecCccccceEEEEecCCceEEe-CCCCCCCccchhhhhccccccccccCCCCCCCCCceeccC
Q 000815 783 PERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSI-GNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 861 (1269)
Q Consensus 783 P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~-g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p 861 (1269)
+..+.-|+-..+.++++|.+..+++++.+.+.- +++ +..-.. .+. ....
T Consensus 8 ~~~~~vG~d~~v~v~~~N~~~~~l~~v~~~l~~---~~v~ytG~~~-----~~~------------------~~~~---- 57 (107)
T PF00927_consen 8 PGDPVVGQDFTVSVSFTNPSSEPLRNVSLNLCA---FTVEYTGLTR-----DQF------------------KKEK---- 57 (107)
T ss_dssp ESEEBTTSEEEEEEEEEE-SSS-EECEEEEEEE---EEEECTTTEE-----EEE------------------EEEE----
T ss_pred CCCccCCCCEEEEEEEEeCCcCccccceeEEEE---EEEEECCccc-----ccE------------------eEEE----
Confidence 445568999999999999999999998888751 222 221100 000 0001
Q ss_pred CCcccCCCCeEEEEEEEEecCCcee
Q 000815 862 EGISIQGETPLLWPLWYRAAVPGKI 886 (1269)
Q Consensus 862 ~~~~L~pGes~~~plwlra~~~G~~ 886 (1269)
....|.||++.++.+-+.....|..
T Consensus 58 ~~~~l~p~~~~~~~~~i~p~~yG~~ 82 (107)
T PF00927_consen 58 FEVTLKPGETKSVEVTITPSQYGPK 82 (107)
T ss_dssp EEEEE-TTEEEEEEEEE-HHSHEEE
T ss_pred cceeeCCCCEEEEEEEEEceeEecc
Confidence 1247999999999999998888773
No 131
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.02 E-value=4e+02 Score=30.66 Aligned_cols=155 Identities=17% Similarity=0.136 Sum_probs=91.7
Q ss_pred ChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHH-HHHhccCChhHHHHHHHHHHHHHhhcCC
Q 000815 334 SIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGL-TYFMLDQSRKEAEYCMENAFTTYAKIGS 412 (1269)
Q Consensus 334 S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~al-s~ll~~~~~~~~~~~le~A~~~Y~~~~~ 412 (1269)
-.-..+-+++=-++=-+...+|..+|+.+++.|-+.+ -|..+ ++++ ++...-+.|+..|.+.-.
T Consensus 50 e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~---------RV~~lkam~l------Ea~~~~~~A~e~y~~lL~ 114 (289)
T KOG3060|consen 50 EIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSK---------RVGKLKAMLL------EATGNYKEAIEYYESLLE 114 (289)
T ss_pred hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCh---------hHHHHHHHHH------HHhhchhhHHHHHHHHhc
Confidence 3445666777677777899999999999999995443 23222 2232 222233344444432210
Q ss_pred -CchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHh----C-cCc---h----hhHHHHHHHHHhhhcC--CCCCCchhHH
Q 000815 413 -SGQQNATRCGLWWVEMLKARHQYKDAATVYFRIC----G-EEP---L----HSAVMLEQASYCYLLS--KPPMLHKYGF 477 (1269)
Q Consensus 413 -~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~----~-e~~---l----~sAlllEqaA~c~l~~--~~p~~RK~Af 477 (1269)
.....++|- .-..++++.|+-.+|.+-+..-+ + .+. | -+-=..|+||+||-.. ..| --...
T Consensus 115 ddpt~~v~~K--RKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P--~n~l~ 190 (289)
T KOG3060|consen 115 DDPTDTVIRK--RKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP--FNPLY 190 (289)
T ss_pred cCcchhHHHH--HHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC--CcHHH
Confidence 112345554 34457788888777765554322 1 111 1 1223457899998653 333 44566
Q ss_pred HHHHHHHHHHhCC--CchHHHHHHHHHHHhhc
Q 000815 478 HLVLSGDRYKKCD--QINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 478 ~~vLAg~ry~kag--q~~~AlrCy~~a~~vY~ 507 (1269)
|..+|--+|..+| ....|..-|.+|+.+-.
T Consensus 191 f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 191 FQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 7888888999888 55567777788877754
No 132
>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane [].; GO: 0005783 endoplasmic reticulum
Probab=52.02 E-value=2.1e+02 Score=33.38 Aligned_cols=86 Identities=17% Similarity=0.335 Sum_probs=55.5
Q ss_pred CccccCCcEEEEEEEEEecCccccc--eEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceecc
Q 000815 783 PERAYAGDLRHLVLELKNQSDFSVK--NLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSF 860 (1269)
Q Consensus 783 P~~ll~GEi~~~~l~L~N~g~~pv~--~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~ 860 (1269)
...+..|+..++-|.++|.|..++. .|.-.+..| .+ +....+ ++ -..
T Consensus 92 ~~~l~aG~~~~~LvgftN~g~~~~~V~~i~aSl~~p--------~d----~~~~iq------------Nf-------Ta~ 140 (285)
T PF03896_consen 92 TKKLPAGEPVKFLVGFTNKGSEPFTVESIEASLRYP--------QD----YSYYIQ------------NF-------TAV 140 (285)
T ss_pred cccccCCCeEEEEEEEEeCCCCCEEEEEEeeeecCc--------cc----cceEEE------------ee-------ccc
Confidence 3568999999999999999985532 222222212 01 000011 00 012
Q ss_pred CCCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEecCCC
Q 000815 861 PEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDV 899 (1269)
Q Consensus 861 p~~~~L~pGes~~~plwlra~---~~G~~~l~~LfyYe~~~~ 899 (1269)
+-+..+.||++.++|-.+... .++...|.+.++|+..++
T Consensus 141 ~y~~~V~pg~~aT~~YsF~~~~~l~pr~f~L~i~l~y~d~~g 182 (285)
T PF03896_consen 141 RYNREVPPGEEATFPYSFTPSEELAPRPFGLVINLIYEDSDG 182 (285)
T ss_pred ccCcccCCCCeEEEEEEEecchhcCCcceEEEEEEEEEeCCC
Confidence 234689999999999999975 477889999999986543
No 133
>PF14796 AP3B1_C: Clathrin-adaptor complex-3 beta-1 subunit C-terminal
Probab=50.95 E-value=69 Score=33.48 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.9
Q ss_pred EEEccCCccccCCcEEEEEEEEEecCccccceEEEEec
Q 000815 777 GLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVS 814 (1269)
Q Consensus 777 v~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s 814 (1269)
..|..=|. ++..-.+.+.|.|+|.+..++++|++.-.
T Consensus 73 Y~F~RqP~-~~s~~mvsIql~ftN~s~~~i~~I~i~~k 109 (145)
T PF14796_consen 73 YRFSRQPS-LYSPSMVSIQLTFTNNSDEPIKNIHIGEK 109 (145)
T ss_pred EEEccCCc-CCCCCcEEEEEEEEecCCCeecceEECCC
Confidence 34444332 38888899999999999999999998755
No 134
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=50.92 E-value=21 Score=26.65 Aligned_cols=26 Identities=31% Similarity=0.257 Sum_probs=22.6
Q ss_pred HHHhhhHHHHhhCHHHHHHHHHHHhh
Q 000815 339 IRILGDYAFMLRDYELALSNYRLIST 364 (1269)
Q Consensus 339 ~RrLADlaFml~DY~~A~s~Y~~l~~ 364 (1269)
.-.+|+.+..+|||+.|...|+.+.+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34689999999999999999997764
No 135
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=50.65 E-value=20 Score=26.85 Aligned_cols=25 Identities=40% Similarity=0.473 Sum_probs=20.8
Q ss_pred HHhhhHHHHhhCHHHHHHHHHHHhh
Q 000815 340 RILGDYAFMLRDYELALSNYRLIST 364 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~~ 364 (1269)
-.+|..++.+++|+.|...|+.+-+
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4689999999999999999987654
No 136
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.03 E-value=4.9e+02 Score=32.51 Aligned_cols=153 Identities=14% Similarity=0.085 Sum_probs=88.7
Q ss_pred hHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHH-----HhcCchHHHHHHHHHHh---CcC
Q 000815 378 VQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEML-----KARHQYKDAATVYFRIC---GEE 449 (1269)
Q Consensus 378 a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l-----~~~~~~~eaa~~l~r~~---~e~ 449 (1269)
-+||++.|-+..+.. -++.+-+-.+.+-..+... ..-+|.---..+++ .+-+.|++|+..++.++ ++.
T Consensus 325 ~LE~iv~c~lv~~~~-~~al~~i~dm~~w~~r~p~---~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~ 400 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDY-VEALEEIVDMKNWCTRFPT---PLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI 400 (629)
T ss_pred HHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHhCCc---hHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH
Confidence 468888888876532 2222222222232333321 23333322222222 23456788998876544 444
Q ss_pred chhhHHHHHHHHHhhhcCC-------------CCCC-------chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 450 PLHSAVMLEQASYCYLLSK-------------PPML-------HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 450 ~l~sAlllEqaA~c~l~~~-------------~p~~-------RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
++ -|++.-.+|..||+.. ++.. -|+++.++.+=+.| +.|....|.|..+..++.-+..
T Consensus 401 dl-~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf-~qn~lnEaK~~l~e~Lkmanae 478 (629)
T KOG2300|consen 401 DL-QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAF-KQNDLNEAKRFLRETLKMANAE 478 (629)
T ss_pred HH-HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhcchh
Confidence 45 6777788899999743 2222 23334344333333 4567778888888888887777
Q ss_pred CccchHHHHHHHHHHHHHHhCCHHHHH
Q 000815 510 TWSHIKDHVHFHIGQWYAVLGMHDIAV 536 (1269)
Q Consensus 510 ~W~~i~dhi~~~Lgr~~~~Lg~~~~Av 536 (1269)
+...+-..=+.-||.....+|+..++-
T Consensus 479 d~~rL~a~~LvLLs~v~lslgn~~es~ 505 (629)
T KOG2300|consen 479 DLNRLTACSLVLLSHVFLSLGNTVESR 505 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 776666666777888888888877664
No 137
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=49.76 E-value=1.2e+02 Score=31.98 Aligned_cols=85 Identities=18% Similarity=0.129 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHH
Q 000815 421 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 500 (1269)
Q Consensus 421 ~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~ 500 (1269)
+....+..+...|.+++|...+-++....+ .+ ...+.-....|..|.+.|+...|+.+|.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----------------~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~ 96 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEE-----------------DP---NDRSYILYNMGIIYASNGEHDKALEYYH 96 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----------------cc---chHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555666777899998877766553211 00 0011123455777888899999999999
Q ss_pred HHHHhhcCCCccchHHHHHHHHHHHHHHhCC
Q 000815 501 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGM 531 (1269)
Q Consensus 501 ~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~ 531 (1269)
.++.......+. +..+|..+..+|+
T Consensus 97 ~al~~~p~~~~~------~~~lg~~~~~~g~ 121 (172)
T PRK02603 97 QALELNPKQPSA------LNNIAVIYHKRGE 121 (172)
T ss_pred HHHHhCcccHHH------HHHHHHHHHHcCC
Confidence 999987654222 2344555555554
No 138
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=48.81 E-value=37 Score=29.07 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=31.2
Q ss_pred ccccCCcEEEEEEEEEecCccccceEEEEecCCceEEe
Q 000815 784 ERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSI 821 (1269)
Q Consensus 784 ~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~ 821 (1269)
..+.-|+....+|+++|.|..++.++.+.=.-|.-+.|
T Consensus 6 ~~~~~Gd~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~ 43 (53)
T TIGR01451 6 TVATIGDTITYTITVTNNGNVPATNVVVTDILPSGTTF 43 (53)
T ss_pred cccCCCCEEEEEEEEEECCCCceEeEEEEEcCCCCCEE
Confidence 34578999999999999999999999888766654444
No 139
>PF12584 TRAPPC10: Trafficking protein particle complex subunit 10, TRAPPC10; InterPro: IPR022233 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. This entry represents a domain which forms part of the TRAPP complex for mediating vesicle docking and fusion in the Golgi apparatus. The fungal version is referred to as Trs130, and an alternative vertebrate alias is TMEM1 [, ].
Probab=47.64 E-value=76 Score=33.04 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=30.2
Q ss_pred eEEEcCCceEEEEEEEEeCceeEEEEEEEEEEEcc
Q 000815 698 DISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG 732 (1269)
Q Consensus 698 ~i~L~p~Etk~v~L~~~P~~~G~L~I~Gv~~~L~~ 732 (1269)
.|.+..+++.++.|.++|.+.|.|..-.|..+-..
T Consensus 80 ~f~~~~~~~~~~~l~LIPL~~G~L~lP~V~i~~~~ 114 (147)
T PF12584_consen 80 VFSLSDGSEHEIPLTLIPLRAGYLPLPKVEIRPYD 114 (147)
T ss_pred eEEecCCCeEEEEEEEEecccceecCCEEEEEecc
Confidence 57778999999999999999999998888776644
No 140
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=47.48 E-value=2.9e+02 Score=36.03 Aligned_cols=51 Identities=16% Similarity=0.035 Sum_probs=37.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 482 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 482 Ag~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-.+.|.|+|....|.+.|..+.. -....+..|...+...|+.++|++.|-+
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34689999999998888876542 1233467788888889999999877655
No 141
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.75 E-value=6.4e+02 Score=30.98 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
.++-|+-....|..+.++-.++.++..|. ++-+|..||........+++|+.|+-..
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~~~-------D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLIIFP-------DVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhhcc-------ccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 45567777888999999999999999986 6778999999999999999999988763
No 142
>PF09478 CBM49: Carbohydrate binding domain CBM49; InterPro: IPR019028 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This domain is found at the C-terminal of cellulases and in vitro binding studies have shown it to binds to crystalline cellulose []. ; GO: 0030246 carbohydrate binding, 0005576 extracellular region
Probab=46.59 E-value=54 Score=30.46 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=23.0
Q ss_pred cEEEEEEEEEecCccccceEEEEec
Q 000815 790 DLRHLVLELKNQSDFSVKNLKMKVS 814 (1269)
Q Consensus 790 Ei~~~~l~L~N~g~~pv~~l~l~~s 814 (1269)
...+..+.|+|.|..||+++.+.++
T Consensus 17 ~y~qy~v~I~N~~~~~I~~~~i~~~ 41 (80)
T PF09478_consen 17 TYTQYDVTITNNGSKPIKSLKISID 41 (80)
T ss_pred EEEEEEEEEEECCCCeEEEEEEEEC
Confidence 4678999999999999999999987
No 143
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=46.45 E-value=38 Score=25.04 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=14.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.-|.-|.+.|+...|+.||.+++.++.
T Consensus 6 ~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 6 YLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 345555566666666666666655543
No 144
>PF12735 Trs65: TRAPP trafficking subunit Trs65; InterPro: IPR024662 This family is one of the subunits of the TRAPP Golgi trafficking complex []. TRAPP subunits are found in two different sized complexes, TRAPP I and TRAPP II. While both complexes contain the same seven subunits, Bet3p, Bet5p, Trs20p, Trs23p, Trs31p, Trs33p and Trs85p, with TRAPPC human equivalents, TRAPP II has the additional three subunits ,Trs65p, Trs120p and Trs130p []. While it has been implicated in cell wall biogenesis and stress response, the role of Trs65 in TRAPP II is supported by the findings that the protein co-localises with Trs130p, and deletion of TRS65 in yeast leads to a conditional lethal phenotype if either one of the other TRAPP II-specific subunits is modified []. Furthermore, the trs65 mutant has reduced Ypt31/32p guanine nucleotide exchange, GEF, activity []. Trs65 is also known as killer toxin-resistance protein 11.
Probab=46.00 E-value=2.1e+02 Score=33.55 Aligned_cols=128 Identities=17% Similarity=0.199 Sum_probs=72.7
Q ss_pred CceEEEEecCceeeccCCCcceeEeEEEEEEcCCCccEeEEEEecCCCCCCCCCcccCCCCCCCCCCCCCC-cc--cccc
Q 000815 1091 TPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAG-WH--DVPV 1167 (1269)
Q Consensus 1091 ~~i~~~l~~p~~~~h~f~~~~c~v~~~l~l~N~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~ 1167 (1269)
+-|+.+..+|..|+ .......++.+-|.|+.+.++.+-...+......-+ ....+...+..++++ +. ++..
T Consensus 156 ~gv~~sF~gp~~V~-----~Ge~F~w~v~ivN~S~~~r~L~l~~~~~r~~~~~~~-~~~~~~~~~s~~~~~~~~~~~v~~ 229 (306)
T PF12735_consen 156 SGVTFSFSGPSSVK-----VGEPFSWKVFIVNRSSSPRKLALYVPPRRRRNDERS-NSPPPNPSSSSNLNNKQIADAVTD 229 (306)
T ss_pred cCeEEEEeCCceEe-----cCCeEEEEEEEEECCCCCeeEEEEecCccccccccc-cCCCCCccccccccccccccccee
Confidence 45677777775554 345677899999999999998888766433222110 001111111111111 11 1122
Q ss_pred cccccccccCCccccccCC-ccCcCCceEEeccccceeE-ecCCceeeEeeEEEEecCceeccCccEEE
Q 000815 1168 LTDIKVTSQLPLNQVKRSS-LLESVSPFIWSGSSASSVR-LQPMSTTDIAMKVCLFSPGTYDLSNYALN 1234 (1269)
Q Consensus 1168 ~~~~~~~~~~~~~~~~~~~-~~~~~~~f~W~g~~~~~~~-l~p~~~~~~~L~~~~~~~G~y~l~~~~~~ 1234 (1269)
+|-+ |...-. +.+...-.++. ...++|= |.|+++..+-|+-.-+++|+|+|..-||.
T Consensus 230 en~~---------~~~~~~~~~~~~~gli~L-snDiriGpL~P~~c~~~eL~fi~l~~G~~~L~~lkvv 288 (306)
T PF12735_consen 230 ENIV---------QAMQKYSSVEESTGLICL-SNDIRIGPLAPGACYSVELRFIALSPGVHNLEGLKVV 288 (306)
T ss_pred hhHH---------HHhhhhcccccCCceEEe-cccccccccCCCceEEEEEEEEEeccceEeecceEEE
Confidence 2221 111000 00002235666 3466774 99999999999999999999999987664
No 145
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=45.88 E-value=3e+02 Score=32.64 Aligned_cols=192 Identities=15% Similarity=0.151 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccCcCchhhhhHhhhcCCCCCCCCCCCCCCccCCChHHHHHHhhh
Q 000815 265 NDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSSIESQIRILGD 344 (1269)
Q Consensus 265 ~~D~~~ir~fv~e~v~~~liP~mEr~I~~lne~v~~~RKgi~~~l~~~w~r~~k~~~~~~~~~~~Y~~~S~E~q~RrLAD 344 (1269)
++|++.+.. .++..+.-+++.+- |=.+.++..||+. .+|-
T Consensus 192 enDv~~aH~---------------~~~~~~~~~~a~~s-~~~~~~~dwwWk~------------------------Q~gk 231 (478)
T KOG1129|consen 192 ENDVQKAHS---------------LCQAVLEVERAKPS-GSTGCTLDWWWKQ------------------------QMGK 231 (478)
T ss_pred hhhHHHHHH---------------HHHHHHHHHhcccc-ccccchHhHHHHH------------------------HHHH
Q ss_pred HHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHH
Q 000815 345 YAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLW 424 (1269)
Q Consensus 345 laFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll 424 (1269)
-++-||-|..|-...++.-+.|+.-..+.+++-+.- .+++=+ .|+..|-..-.. ..+-.-..+=
T Consensus 232 CylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~--------------ridQP~-~AL~~~~~gld~-fP~~VT~l~g 295 (478)
T KOG1129|consen 232 CYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ--------------RIDQPE-RALLVIGEGLDS-FPFDVTYLLG 295 (478)
T ss_pred HHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH--------------HhccHH-HHHHHHhhhhhc-CCchhhhhhh
Q ss_pred HHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Q 000815 425 WVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVS 504 (1269)
Q Consensus 425 ~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~ 504 (1269)
.+.++...+++++|+.++-+.+..++. .--|.-+|-.|+.| .|++..|+|.|++.++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~---------------------nvEaiAcia~~yfY--~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPI---------------------NVEAIACIAVGYFY--DNNPEMALRYYRRILQ 352 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCc---------------------cceeeeeeeecccc--CCChHHHHHHHHHHHH
Q ss_pred hhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 505 VYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 505 vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
. ..-...+...||-++.--+|+|-++..|.+
T Consensus 353 m------G~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 353 M------GAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred h------cCCChHHHhhHHHHHHhhcchhhhHHHHHH
No 146
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.86 E-value=23 Score=28.66 Aligned_cols=38 Identities=18% Similarity=-0.018 Sum_probs=28.5
Q ss_pred HHHhhhHHHHhhCHHHHHHHHHHHhhhhcc-ccchhhhh
Q 000815 339 IRILGDYAFMLRDYELALSNYRLISTDYKL-DKAWKRYA 376 (1269)
Q Consensus 339 ~RrLADlaFml~DY~~A~s~Y~~l~~Df~~-Dkaw~~~A 376 (1269)
...||..+.-+|+++.|...|+.+-+..-. -.+|..+|
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 356899999999999999999966654433 34565554
No 147
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=44.74 E-value=95 Score=29.66 Aligned_cols=68 Identities=18% Similarity=0.230 Sum_probs=47.9
Q ss_pred CCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeee
Q 000815 618 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 697 (1269)
Q Consensus 618 ~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 697 (1269)
...+.+|+.....|+|+|--.++..+. ++ . +... ...|.+...
T Consensus 13 FG~v~~g~~~~~~v~l~N~s~~p~~f~-v~----~-~~~~-------------------------------~~~~~v~~~ 55 (102)
T PF14874_consen 13 FGNVFVGQTYSRTVTLTNTSSIPARFR-VR----Q-PESL-------------------------------SSFFSVEPP 55 (102)
T ss_pred eeEEccCCEEEEEEEEEECCCCCEEEE-EE----e-CCcC-------------------------------CCCEEEECC
Confidence 446679999999999999999997764 22 1 1100 013555555
Q ss_pred eEEEcCCceEEEEEEEEe-CceeEEE
Q 000815 698 DISLGGAETILVQLMVTP-KVEGILK 722 (1269)
Q Consensus 698 ~i~L~p~Etk~v~L~~~P-~~~G~L~ 722 (1269)
.-.|.|+++..+.+.+.| +..|.+.
T Consensus 56 ~g~l~PG~~~~~~V~~~~~~~~g~~~ 81 (102)
T PF14874_consen 56 SGFLAPGESVELEVTFSPTKPLGDYE 81 (102)
T ss_pred CCEECCCCEEEEEEEEEeCCCCceEE
Confidence 667999999999999994 5556543
No 148
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=44.33 E-value=4e+02 Score=34.82 Aligned_cols=55 Identities=9% Similarity=0.059 Sum_probs=36.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 482 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 482 Ag~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
....|.+.|....|...+..+... |+ .....++..|...+.+.|++++|.+.|-+
T Consensus 331 ll~a~~~~g~~~~a~~i~~~m~~~----g~-~~d~~~~~~Li~~y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 331 MIRIFSRLALLEHAKQAHAGLIRT----GF-PLDIVANTALVDLYSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHHhccchHHHHHHHHHHHHh----CC-CCCeeehHHHHHHHHHCCCHHHHHHHHHh
Confidence 344567777777777777666543 21 12445667788888888888888877643
No 149
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=43.45 E-value=4.6e+02 Score=35.50 Aligned_cols=201 Identities=12% Similarity=-0.052 Sum_probs=117.1
Q ss_pred CCccCCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHH--------HHHHHHHhccCChhHHHHH
Q 000815 328 PMYTFSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQE--------MMGLTYFMLDQSRKEAEYC 399 (1269)
Q Consensus 328 ~~Y~~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~E--------M~als~ll~~~~~~~~~~~ 399 (1269)
+.|.++-.+... +|++.+--.++|+.|..+.+...+.+.+.-.+.|+-|-.- |+.+ -++..- +.+. .+
T Consensus 24 ~~~~p~n~~a~~-~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-~~l~~~-~~~~-~~ 99 (906)
T PRK14720 24 NNYSLSKFKELD-DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-NLIDSF-SQNL-KW 99 (906)
T ss_pred ccCCcchHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-hhhhhc-cccc-ch
Confidence 346666666654 5777888899999999999988887776666555433211 0111 110000 0000 00
Q ss_pred HHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHH
Q 000815 400 MENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHL 479 (1269)
Q Consensus 400 le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~ 479 (1269)
+++..|..|- ......-++..-.+++|...|.+++|-..+-|++.-+ ..-+.++-+.||.|... -..||--..
T Consensus 100 --~~ve~~~~~i-~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~---dL~KA~~m~ 172 (906)
T PRK14720 100 --AIVEHICDKI-LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE---DKEKAITYL 172 (906)
T ss_pred --hHHHHHHHHH-HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh---hHHHHHHHH
Confidence 1111111110 1112223455567889999999999988888877654 44678888999987665 456666666
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhh-cC-CCccchHHHHHHHHH------------HHHHHhCCHHHHHHHH
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVY-KG-STWSHIKDHVHFHIG------------QWYAVLGMHDIAVAHM 539 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY-~~-~~W~~i~dhi~~~Lg------------r~~~~Lg~~~~Av~hl 539 (1269)
--|-.+|....|...++--+......= .. .-+-.++.-|...+| ..+....++++++..|
T Consensus 173 ~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 173 KKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred HHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 667778888877777666443322211 11 123445555555555 5556667777776444
No 150
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=42.76 E-value=55 Score=40.04 Aligned_cols=56 Identities=20% Similarity=0.308 Sum_probs=48.6
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+.-|+-|+|-++...|+.||++|...=. .+.-++..||+.+.++++..+|...+..
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~d------te~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLGD------TEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhccc------cchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4458999999999999999999988744 4778999999999999999999877654
No 151
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=42.44 E-value=1.1e+02 Score=32.39 Aligned_cols=88 Identities=13% Similarity=0.028 Sum_probs=58.2
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHH-HHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchh
Q 000815 338 QIRILGDYAFMLRDYELALSNYR-LISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~-~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
.+=.+|-..+-.|+|+.|.+.|+ +++-|+.+-..|.-+|.|.-.. .-++.|+..|.++.... .
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~---------------g~~~~AI~aY~~A~~L~-~ 100 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQ---------------KHWGEAIYAYGRAAQIK-I 100 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHhcC-C
Confidence 34456777788899999999999 5668888877776655544311 13556777777654322 2
Q ss_pred hHHHHHHHHHHHHHhcCchHHHHHH
Q 000815 417 NATRCGLWWVEMLKARHQYKDAATV 441 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~eaa~~ 441 (1269)
.--|...-.++++...|+...|.+-
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHH
Confidence 2346666677777777777665443
No 152
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=42.26 E-value=85 Score=31.04 Aligned_cols=60 Identities=5% Similarity=-0.026 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+..+..-|..|.+.|+...|+++|..+...... ....++.+|..++.+|+++.|+..+..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY------NSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888899999999999999999887643 346778999999999999999987755
No 153
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=41.80 E-value=2.8e+02 Score=28.04 Aligned_cols=84 Identities=12% Similarity=0.204 Sum_probs=47.9
Q ss_pred cccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeEE
Q 000815 621 CVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDIS 700 (1269)
Q Consensus 621 ~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~ 700 (1269)
+..|+..+++|.+.|.-+=++.+. +.+.--.+..++.+....... ..|.. +...-..+...+..|+
T Consensus 23 ~~P~q~~~l~v~i~N~s~~~~tv~-v~~~~A~Tn~nG~I~Y~~~~~----~~d~s---------l~~~~~~~v~~~~~Vt 88 (121)
T PF06030_consen 23 VKPGQKQTLEVRITNNSDKEITVK-VSANTATTNDNGVIDYSQNNP----KKDKS---------LKYPFSDLVKIPKEVT 88 (121)
T ss_pred eCCCCEEEEEEEEEeCCCCCEEEE-EEEeeeEecCCEEEEECCCCc----ccCcc---------cCcchHHhccCCcEEE
Confidence 447899999999999988888773 333333333333332211100 00000 0000111222233599
Q ss_pred EcCCceEEEEEEEEeCce
Q 000815 701 LGGAETILVQLMVTPKVE 718 (1269)
Q Consensus 701 L~p~Etk~v~L~~~P~~~ 718 (1269)
|.|+|+|.|.+.++-...
T Consensus 89 l~~~~sk~V~~~i~~P~~ 106 (121)
T PF06030_consen 89 LPPNESKTVTFTIKMPKK 106 (121)
T ss_pred ECCCCEEEEEEEEEcCCC
Confidence 999999999999987775
No 154
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=41.46 E-value=8.1e+02 Score=30.65 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=84.8
Q ss_pred ccCCccccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceec
Q 000815 780 HPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFS 859 (1269)
Q Consensus 780 ~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~ 859 (1269)
...|..+.-|+...+++.|+|.|+.+++++.+...+|.-.. +.-.+ . +.
T Consensus 157 ~~~~~~i~~G~~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~-~~i~~----------------------~-----~~--- 205 (500)
T COG1361 157 VSSPEAIIPGETNTLTLTIKNPGEGPAKNVSLSLESPTSYL-GPIYS----------------------A-----ND--- 205 (500)
T ss_pred ecCccccCCCCccEEEEEEEeCCcccccceEEEEeCCccee-ccccc----------------------c-----cc---
Confidence 34577899999999999999999999999999987531100 00000 0 00
Q ss_pred cCCCcccCCCCeEEEEEEEEec---CCceeEEEEEEEEecCCCcccceEEEEEEEEEEEEecceeEEEEEEeec---ccc
Q 000815 860 FPEGISIQGETPLLWPLWYRAA---VPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWS---SRL 933 (1269)
Q Consensus 860 ~p~~~~L~pGes~~~plwlra~---~~G~~~l~~LfyYe~~~~~~~~~~R~~R~~~~l~V~pSL~vs~~~~~s~---s~~ 933 (1269)
.+--..|.||++..+++-+-+- ..|...+++.+-|...+... +.-.-...+.+.+...++.+..... -..
T Consensus 206 ~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~~~~----~~~~~~~~i~~~~~~~~~is~v~~~p~~~~~ 281 (500)
T COG1361 206 TPYIGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEEGSV----KSPTITIGIVVVGEPKLDISNVKFDPGVIPL 281 (500)
T ss_pred ceeeeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCCccc----cccceEEEEecCCceeEEEEEEEecCCeecc
Confidence 0011478999999999999887 59999999999999844321 2223334455555555555432221 123
Q ss_pred ceEEEEEEEEeCCC
Q 000815 934 QQYLVRMDVVNQTS 947 (1269)
Q Consensus 934 ~e~~v~v~V~N~~~ 947 (1269)
....+.+.+.+.+.
T Consensus 282 ~~~~i~~~~~~~~~ 295 (500)
T COG1361 282 GGVSIEITITIENS 295 (500)
T ss_pred ceeEEEEEEEEEec
Confidence 44556666655544
No 155
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=41.30 E-value=6.1e+02 Score=32.73 Aligned_cols=183 Identities=17% Similarity=0.157 Sum_probs=104.0
Q ss_pred HHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchh
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
+-.-.-||+++-++.+|.|..+|+.+..-+- ..|.||-+.+.-.+ ...+.. .....++...-+.|-++..+
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP--dn~~Yy~~l~~~lg---k~~d~~-~~lk~ly~~ls~~y~r~e~p--- 290 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLERNP--DNLDYYEGLEKALG---KIKDML-EALKALYAILSEKYPRHECP--- 290 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc--hhHHHHHHHHHHHH---HHhhhH-HHHHHHHHHHhhcCcccccc---
Confidence 3445669999999999999999997776554 56778766665444 111100 11223344444455444332
Q ss_pred hHHHHHHHHHHHHHhcCchHHH-HHHHHHH--------------hCcCchhhHHHHHHHHHhhhcCCCC--CC-------
Q 000815 417 NATRCGLWWVEMLKARHQYKDA-ATVYFRI--------------CGEEPLHSAVMLEQASYCYLLSKPP--ML------- 472 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~~~ea-a~~l~r~--------------~~e~~l~sAlllEqaA~c~l~~~~p--~~------- 472 (1269)
.|..+-..+- ..+.+. ..+|.+. +-+++...+ ++|+.+.-|.+...+ ++
T Consensus 291 --~Rlplsvl~~----eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 291 --RRLPLSVLNG----EELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred --hhccHHHhCc----chhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccc
Confidence 2332211111 112222 2233222 234455566 999999988875332 11
Q ss_pred ----chhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 473 ----HKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 473 ----RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
--.+......+..|.+.|+.+-|+--...|..--. -.--++..-+|.+-..|+++.|...|=+
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTP------TliEly~~KaRI~kH~G~l~eAa~~l~e 430 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTP------TLIELYLVKARIFKHAGLLDEAAAWLDE 430 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCc------hHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 12234456677788888888888665555543211 1122345678899999999998877655
No 156
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=40.63 E-value=70 Score=39.31 Aligned_cols=58 Identities=9% Similarity=0.020 Sum_probs=48.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHH-HHHHHHHHHHHHhCCHHHHHHHHHHhc
Q 000815 482 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKD-HVHFHIGQWYAVLGMHDIAVAHMLEKT 543 (1269)
Q Consensus 482 Ag~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~d-hi~~~Lgr~~~~Lg~~~~Av~hll~~~ 543 (1269)
-|..|.+.|....|+.||++|+.+-.+. .+- +.++.+|-.+..+|+.++|+.++.+..
T Consensus 81 LG~AL~~lGryeEAIa~f~rALeL~Pd~----aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 81 LGLSLFSKGRVKDALAQFETALELNPNP----DEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3778889999999999999999997653 222 567999999999999999999887743
No 157
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=39.86 E-value=2e+02 Score=27.06 Aligned_cols=73 Identities=16% Similarity=0.152 Sum_probs=38.6
Q ss_pred EEEEEEEECcccCcEEeE-----EEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeEEE
Q 000815 627 VKVDIEFKNPLQIPISIS-----NISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISL 701 (1269)
Q Consensus 627 i~V~V~L~NPL~ipL~ls-----~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L 701 (1269)
+.+.++++|+-.-++.|+ ...+.+... .+. . -=.+++...|+....+.+|
T Consensus 2 v~~~l~v~N~s~~~v~l~f~sgq~~D~~v~d~--~g~----------------~-------vwrwS~~~~FtQal~~~~l 56 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPSGQRYDFVVKDK--EGK----------------E-------VWRWSDGKMFTQALQEETL 56 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESSS--EEEEEE-T--T------------------E-------EEETTTT-------EEEEE
T ss_pred EEEEEEEEeCCCCeEEEEeCCCCEEEEEEECC--CCC----------------E-------EEEecCCchhhheeeEEEE
Confidence 678899999999888876 122222111 000 0 0123444567766779999
Q ss_pred cCCceEEEEEEEEeCc--eeEEEEE
Q 000815 702 GGAETILVQLMVTPKV--EGILKIV 724 (1269)
Q Consensus 702 ~p~Etk~v~L~~~P~~--~G~L~I~ 724 (1269)
.|+|+++....+-... +|..++.
T Consensus 57 ~pGe~~~~~~~~~~~~~~~G~Y~~~ 81 (82)
T PF12690_consen 57 EPGESLTYEETWDLKDLSPGEYTLE 81 (82)
T ss_dssp -TT-EEEEEEEESS----SEEEEEE
T ss_pred CCCCEEEEEEEECCCCCCCceEEEe
Confidence 9999999999888877 7888764
No 158
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=39.37 E-value=1.8e+02 Score=35.47 Aligned_cols=186 Identities=18% Similarity=0.130 Sum_probs=103.7
Q ss_pred HHHHhhCHHHHHHHHHHH---hhhhccccchhhhhchHHHHHHHHHhccCCh-hHHH-HHHHHHHHHHhhcCCCch--hh
Q 000815 345 YAFMLRDYELALSNYRLI---STDYKLDKAWKRYAGVQEMMGLTYFMLDQSR-KEAE-YCMENAFTTYAKIGSSGQ--QN 417 (1269)
Q Consensus 345 laFml~DY~~A~s~Y~~l---~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~-~~~~-~~le~A~~~Y~~~~~~~~--~~ 417 (1269)
-.+||+.|+.|..-|+.- +.+|. |+-...+=|.+ +++.++..+.. ++.+ +-.-+|+.++.+.-.... .-
T Consensus 92 ~~m~~~~~~~a~~dar~~~r~kd~~~--k~~~r~~~c~~--a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pa 167 (486)
T KOG0550|consen 92 TLMMLGRFEEALGDARQSVRLKDGFS--KGQLREGQCHL--ALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPA 167 (486)
T ss_pred HHHHHHhHhhcccchhhheecCCCcc--ccccchhhhhh--hhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCch
Confidence 457788899888777533 33333 23333332222 23333322110 0111 122334444443321110 22
Q ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc------------------hhhHHHHHHHHH-----hhhcCCCCCCch
Q 000815 418 ATRCGLWWVEMLKARHQYKDAATVYFRICGEEP------------------LHSAVMLEQASY-----CYLLSKPPMLHK 474 (1269)
Q Consensus 418 A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~------------------l~sAlllEqaA~-----c~l~~~~p~~RK 474 (1269)
-.+.-++.+++|-..|.+++|....+++.-+++ .--|...+|=|. |+-..+.-|.-|
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 378889999999999999988766665554332 222333333332 000001113445
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHH
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAV 536 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av 536 (1269)
..--+-.-|+.-.|.|..+.|-.||..|+.+=.. =....-|++...+.....||++++||
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~--n~~~naklY~nra~v~~rLgrl~eai 307 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS--NKKTNAKLYGNRALVNIRLGRLREAI 307 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc--ccchhHHHHHHhHhhhcccCCchhhh
Confidence 5555667788888999999999999999988654 23445566666666777788888876
No 159
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=39.06 E-value=3.3e+02 Score=29.69 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=40.8
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhcc
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLD 390 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~ 390 (1269)
-.++.++ .||+-+|..+||+.|...|+...+.|-+.. +..-|.=|.|+|.+.+.
T Consensus 40 ~a~~A~l-~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 40 YAPQAQL-MLAYAYYKQGDYEEAIAAYERFIKLYPNSP---KADYALYMLGLSYYKQI 93 (203)
T ss_dssp THHHHHH-HHHHHHHHTT-HHHHHHHHHHHHHH-TT-T---THHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhhHHHHHHHHHHHhC
Confidence 3566666 689999999999999999999999887654 45567778888877653
No 160
>PF12742 Gryzun-like: Gryzun, putative Golgi trafficking
Probab=38.70 E-value=59 Score=28.51 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=37.3
Q ss_pred CCceEEeccccceeEecCCceeeEeeEEEEecCceeccCcc
Q 000815 1191 VSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNY 1231 (1269)
Q Consensus 1191 ~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~G~y~l~~~ 1231 (1269)
...|+=+|..+.++++.|++.++|+-+-.=+..|-|-|=+.
T Consensus 15 n~~F~v~G~~~~~~~~~~~~~~~i~~~Fipl~aG~~~LP~I 55 (57)
T PF12742_consen 15 NDNFIVCGPKKMNFHMWPGQKFEIPYNFIPLTAGFLKLPKI 55 (57)
T ss_pred CCceEEEccceeEEEEccCceEEEEEEEEEeehheecCccc
Confidence 67799999999999999999999999999999998887543
No 161
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.38 E-value=6.8e+02 Score=28.91 Aligned_cols=153 Identities=13% Similarity=0.146 Sum_probs=92.5
Q ss_pred cccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 000815 368 LDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG 447 (1269)
Q Consensus 368 ~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~ 447 (1269)
.|.-|. ..||.+|+++=.++. -.+..++..--..+ ...-|...+-+-.|-+.|.|++|..++-++++
T Consensus 48 g~e~w~----l~EqV~IAAld~~~~-~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ 114 (289)
T KOG3060|consen 48 GDEIWT----LYEQVFIAALDTGRD-DLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE 114 (289)
T ss_pred CchHHH----HHHHHHHHHHHhcch-HHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc
Confidence 345564 459988888854311 11223333222222 12358888888889999999999999999999
Q ss_pred cCchhhHHHHHHHHHhhhcCCCC-------------CCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccch
Q 000815 448 EEPLHSAVMLEQASYCYLLSKPP-------------MLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHI 514 (1269)
Q Consensus 448 e~~l~sAlllEqaA~c~l~~~~p-------------~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i 514 (1269)
+||.-.+.--=.+|..=...+.- |.---|. .-+++-|..-|+...|..||..++-+=. .
T Consensus 115 ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW--~eLaeiY~~~~~f~kA~fClEE~ll~~P------~ 186 (289)
T KOG3060|consen 115 DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAW--HELAEIYLSEGDFEKAAFCLEELLLIQP------F 186 (289)
T ss_pred cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHH--HHHHHHHHhHhHHHHHHHHHHHHHHcCC------C
Confidence 88765544443444421111110 1111121 2457888889999999999988876632 2
Q ss_pred HHHHHHHHHHHHHHhCCHHH---HHHHHHH
Q 000815 515 KDHVHFHIGQWYAVLGMHDI---AVAHMLE 541 (1269)
Q Consensus 515 ~dhi~~~Lgr~~~~Lg~~~~---Av~hll~ 541 (1269)
.--.+..||...|++|..++ |-+|+.+
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22345678888888886554 4455544
No 162
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=37.40 E-value=59 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 517 HVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 517 hi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
++++.+|..+..+|+.+.|+++|-+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~ 26 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEK 26 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4688999999999999999988765
No 163
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=36.16 E-value=39 Score=26.13 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.=|+-|.+.|.+..|+.||.+++.+-+
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 457889999999999999999886543
No 164
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=35.99 E-value=38 Score=29.39 Aligned_cols=40 Identities=10% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccch
Q 000815 332 FSSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAW 372 (1269)
Q Consensus 332 ~~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw 372 (1269)
++.++..+ .||..++..|+|+.|..+++.+.+....+..|
T Consensus 22 p~~~~~~~-~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 22 PDNPEARL-LLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTSHHHHH-HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred CCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 34566655 69999999999999999999888887765444
No 165
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=35.91 E-value=43 Score=25.01 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
..=|.-|.+.|+...|+.||.+|+++..
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3457889999999999999999998754
No 166
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.78 E-value=35 Score=42.60 Aligned_cols=98 Identities=14% Similarity=0.103 Sum_probs=62.0
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhh-hccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcC
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTD-YKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIG 411 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~D-f~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~ 411 (1269)
.+|+-|. -||=|+-|.|+|+.|..+|+.+-.+ =++..-|..+.+++= +..+. ++|+..|.++-
T Consensus 428 ~DpdvQ~-~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA---------N~~~s------~EAIsAY~rAL 491 (579)
T KOG1125|consen 428 IDPDVQS-GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA---------NGNRS------EEAISAYNRAL 491 (579)
T ss_pred CChhHHh-hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc---------CCccc------HHHHHHHHHHH
Confidence 5666665 5899999999999999999976643 233357988776643 33222 46777777653
Q ss_pred CCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhC
Q 000815 412 SSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG 447 (1269)
Q Consensus 412 ~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~ 447 (1269)
..- ..-+|+=--.+..+-..|.|+||+..|++++.
T Consensus 492 qLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 492 QLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred hcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 210 11122222223333457899999999887754
No 167
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=35.78 E-value=64 Score=30.32 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=16.8
Q ss_pred EeEEEEEEcCCCccEeEEEEe
Q 000815 1114 VNLKMTIYNSSDAAMFVRVNT 1134 (1269)
Q Consensus 1114 v~~~l~l~N~s~~~~~~~i~~ 1134 (1269)
|.++|++.|.++.++.+.+.+
T Consensus 2 v~~~l~v~N~s~~~v~l~f~s 22 (82)
T PF12690_consen 2 VEFTLTVTNNSDEPVTLQFPS 22 (82)
T ss_dssp EEEEEEEEE-SSS-EEEEESS
T ss_pred EEEEEEEEeCCCCeEEEEeCC
Confidence 679999999999999988765
No 168
>PF02883 Alpha_adaptinC2: Adaptin C-terminal domain; InterPro: IPR008152 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. AP (adaptor protein) complexes are found in coated vesicles and clathrin-coated pits. AP complexes connect cargo proteins and lipids to clathrin at vesicle budding sites, as well as binding accessory proteins that regulate coat assembly and disassembly (such as AP180, epsins and auxilin). There are different AP complexes in mammals. AP1 is responsible for the transport of lysosomal hydrolases between the TGN and endosomes []. AP2 associates with the plasma membrane and is responsible for endocytosis []. AP3 is responsible for protein trafficking to lysosomes and other related organelles []. AP4 is less well characterised. AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). For example, in AP1 these subunits are gamma-1-adaptin, beta-1-adaptin, mu-1 and sigma-1, while in AP2 they are alpha-adaptin, beta-2-adaptin, mu-2 and sigma-2. Each subunit has a specific function. Adaptins recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal ear (appendage) domains. Mu recognises tyrosine-based sorting signals within the cytoplasmic domains of transmembrane cargo proteins []. One function of clathrin and AP2 complex-mediated endocytosis is to regulate the number of GABA(A) receptors available at the cell surface []. GGAs (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) are a family of monomeric clathrin adaptor proteins that are conserved from yeasts to humans. GGAs regulate clathrin-mediated the transport of proteins (such as mannose 6-phosphate receptors) from the TGN to endosomes and lysosomes through interactions with TGN-sorting receptors, sometimes in conjunction with AP-1 [, ]. GGAs bind cargo, membranes, clathrin and accessory factors. GGA1, GGA2 and GGA3 all contain a domain homologous to the ear domain of gamma-adaptin. GGAs are composed of a single polypeptide with four domains: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The VHS domain is responsible for endocytosis and signal transduction, recognising transmembrane cargo through the ACLL sequence in the cytoplasmic domains of sorting receptors []. The GAT domain (also found in Tom1 proteins) interacts with ARF (ADP-ribosylation factor) to regulate membrane trafficking [], and with ubiquitin for receptor sorting []. The hinge region contains a clathrin box for recognition and binding to clathrin, similar to that found in AP adaptins. The GAE domain is similar to the AP gamma-adaptin ear domain, and is responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. This entry represents a beta-sandwich structural motif found in the appendage (ear) domain of alpha-, beta- and gamma-adaptin from AP clathrin adaptor complexes, and the GAE (gamma-adaptin ear) domain of GGA adaptor proteins. These domains have an immunoglobulin-like beta-sandwich fold containing 7 or 8 strands in 2 beta-sheets in a Greek key topology [, ]. Although these domains share a similar fold, there is little sequence identity between the alpha/beta-adaptins and gamma-adaptin/GAE. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030131 clathrin adaptor complex; PDB: 3MNM_B 3ZY7_B 1GYU_A 1GYW_B 2A7B_A 1GYV_A 2E9G_A 1E42_B 2G30_A 2IV9_B ....
Probab=35.44 E-value=2.4e+02 Score=27.56 Aligned_cols=76 Identities=13% Similarity=0.283 Sum_probs=52.0
Q ss_pred CCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccC
Q 000815 788 AGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQ 867 (1269)
Q Consensus 788 ~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~ 867 (1269)
.|...++.+.+.|.+..+++++.+.+.-|..+.+. +.+ +.+..|.
T Consensus 22 ~~~~~~i~~~f~N~s~~~it~f~~q~avpk~~~l~----------------------------------l~~-~s~~~i~ 66 (115)
T PF02883_consen 22 NPNQGRIKLTFGNKSSQPITNFSFQAAVPKSFKLQ----------------------------------LQP-PSSSTIP 66 (115)
T ss_dssp ETTEEEEEEEEEE-SSS-BEEEEEEEEEBTTSEEE----------------------------------EEE-SS-SSB-
T ss_pred CCCEEEEEEEEEECCCCCcceEEEEEEeccccEEE----------------------------------EeC-CCCCeeC
Confidence 67888999999999999999999987543111110 111 1235788
Q ss_pred CCCeEEEEEEEEe-----cCCceeEEEEEEEEecCC
Q 000815 868 GETPLLWPLWYRA-----AVPGKISLSITIYYEMGD 898 (1269)
Q Consensus 868 pGes~~~plwlra-----~~~G~~~l~~LfyYe~~~ 898 (1269)
||+.++..+-+.+ +......+++.+.|.-++
T Consensus 67 p~~~i~Q~~~v~~~~~~~~~~~~l~~~~~vsy~~~g 102 (115)
T PF02883_consen 67 PGQQITQVIKVENSPFSEPTPKPLKPRLRVSYNVGG 102 (115)
T ss_dssp TTTEEEEEEEEEESS-BSTTSSTTEEEEEEEEEETT
T ss_pred CCCeEEEEEEEEEeecccCCCCCcCeEEEEEEEECC
Confidence 8999999999988 555566788888887765
No 169
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.11 E-value=1.6e+02 Score=34.08 Aligned_cols=94 Identities=23% Similarity=0.242 Sum_probs=59.6
Q ss_pred hhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHH--HHHHHHhhcCCCchhhHHHHHHHHH
Q 000815 349 LRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCME--NAFTTYAKIGSSGQQNATRCGLWWV 426 (1269)
Q Consensus 349 l~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le--~A~~~Y~~~~~~~~~~A~R~~ll~~ 426 (1269)
-+||+.|+|++=-+-.-|.+-+.-.-.-..+-.+.+|-.|.+ .+.++...|. .+..+|.. ..+|+++--+
T Consensus 219 d~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN-~~~evk~vl~~K~t~~~y~~-------r~I~am~ava 290 (421)
T COG5159 219 DRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLN-RREEVKAVLRNKNTLKHYDD-------RMIRAMLAVA 290 (421)
T ss_pred cccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHh-hHHHHHHHHccchhHhhhhh-------hhHHHHHHHH
Confidence 379999999987777777765543334445566778888864 3345555552 22333432 3478888889
Q ss_pred HHHHhcCc--hHHHHHHHHHHhCcCc
Q 000815 427 EMLKARHQ--YKDAATVYFRICGEEP 450 (1269)
Q Consensus 427 e~l~~~~~--~~eaa~~l~r~~~e~~ 450 (1269)
|.+-.|+. |+.|-+.+-.-+..|+
T Consensus 291 ea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 291 EAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 99877765 6777776655444444
No 170
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=34.88 E-value=7.8e+02 Score=34.62 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=28.5
Q ss_pred CccccCCcEEEEEEEEEecCccc--cceEEEEecCCce
Q 000815 783 PERAYAGDLRHLVLELKNQSDFS--VKNLKMKVSHPRF 818 (1269)
Q Consensus 783 P~~ll~GEi~~~~l~L~N~g~~p--v~~l~l~~s~P~~ 818 (1269)
+..+..||...+.|+|+|.=... |.+|.+.+..-.|
T Consensus 644 ~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~f 681 (1185)
T PF08626_consen 644 EPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVPF 681 (1185)
T ss_pred CccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCcc
Confidence 34568999999999999988665 5789988875433
No 171
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=4.4e+02 Score=31.53 Aligned_cols=107 Identities=19% Similarity=0.300 Sum_probs=57.9
Q ss_pred CHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHH
Q 000815 351 DYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLK 430 (1269)
Q Consensus 351 DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~ 430 (1269)
+-|.|.+.++++-.--. ----.+|-|-|++ +.||.- .-.++.-|| +++.+|-.-. ..+ .+-.+....
T Consensus 338 HlKiAqqffqlVG~Sa~---ecDTIpGRQsmAs-~fFL~~-qFddVl~Yl-nSi~sYF~Nd---D~F----n~N~AQAk~ 404 (557)
T KOG3785|consen 338 HLKIAQQFFQLVGESAL---ECDTIPGRQSMAS-YFFLSF-QFDDVLTYL-NSIESYFTND---DDF----NLNLAQAKL 404 (557)
T ss_pred HHHHHHHHHHHhccccc---ccccccchHHHHH-HHHHHH-HHHHHHHHH-HHHHHHhcCc---chh----hhHHHHHHH
Confidence 36677777776654211 1123566666654 333321 122344444 3445554321 111 123344555
Q ss_pred hcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCC
Q 000815 431 ARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPP 470 (1269)
Q Consensus 431 ~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p 470 (1269)
+-|.|.||...++|+.+++-=-..+-.-..|-||++.+.|
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCc
Confidence 6789999999999999876222223344468888876654
No 172
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=34.31 E-value=1.6e+02 Score=29.25 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=23.7
Q ss_pred cccCCCCeEEEEEEEEecC----CceeEEEEEEEE
Q 000815 864 ISIQGETPLLWPLWYRAAV----PGKISLSITIYY 894 (1269)
Q Consensus 864 ~~L~pGes~~~plwlra~~----~G~~~l~~LfyY 894 (1269)
..|.||++.++|+.+++|. .|.+.+.|-+.+
T Consensus 68 i~v~~g~~~~~~v~v~~p~~~~~~~~~~i~f~v~~ 102 (118)
T PF11614_consen 68 ITVPPGETREVPVFVTAPPDALKSGSTPITFTVTD 102 (118)
T ss_dssp EEE-TT-EEEEEEEEEE-GGG-SSSEEEEEEEEEE
T ss_pred eEECCCCEEEEEEEEEECHHHccCCCeeEEEEEEE
Confidence 4789999999999999983 477888888884
No 173
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=34.09 E-value=8.1e+02 Score=30.60 Aligned_cols=92 Identities=14% Similarity=0.130 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHH
Q 000815 423 LWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSA 502 (1269)
Q Consensus 423 ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a 502 (1269)
+..+..|-..|.+.||.+.|-+.+..++- .+..|-..|-.|-.... |+-+ ..-=|+.|.-+|-++.|+-.+.+|
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~---~~~a--~~A~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGN---RAEA--LLARAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCc---hHHH--HHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34577777788889998888887765442 23456666666654432 3332 344567888889999999999999
Q ss_pred HHhhcC--CCccchHHHHHH
Q 000815 503 VSVYKG--STWSHIKDHVHF 520 (1269)
Q Consensus 503 ~~vY~~--~~W~~i~dhi~~ 520 (1269)
.+-++. ..|..+++-|+.
T Consensus 452 ~~~~~~~~~~~aR~dari~~ 471 (484)
T COG4783 452 SQQVKLGFPDWARADARIDQ 471 (484)
T ss_pred HHhccCCcHHHHHHHHHHHH
Confidence 988854 358777777764
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=33.83 E-value=1e+02 Score=26.55 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=36.6
Q ss_pred HhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHH
Q 000815 341 ILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAF 404 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~ 404 (1269)
.+|..++-.|||+.|...|+.+.+.+-. .+-+.-+.|.+++.++. ..++..+++.++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~-~~~A~~~~~~a~ 58 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGR-YDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT--HHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 3688899999999999999988876643 22334555666665432 223334555444
No 175
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=32.19 E-value=1.1e+02 Score=38.14 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=37.1
Q ss_pred hhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCC------hhHHHHHHHHHH
Q 000815 343 GDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS------RKEAEYCMENAF 404 (1269)
Q Consensus 343 ADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~------~~~~~~~le~A~ 404 (1269)
|-.+++++||+.|+.++..+.++=+--||+.+ =|+|.|++|.+.. +.++..+|.++-
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~-----Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLKESKWSKAFYA-----YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHhccccHHHHHH-----HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 44477899999999999999984333344433 3567888887644 133445555443
No 176
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function. The region in question is approximately 150 residues long.
Probab=32.06 E-value=1.6e+02 Score=37.16 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=50.7
Q ss_pred CCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeee
Q 000815 618 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 697 (1269)
Q Consensus 618 ~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 697 (1269)
.+...+|+++++.++|+||=...++++ +..+ ++.+..-++. ...
T Consensus 478 p~~~~~~~~~~l~~~I~N~T~~~~~~~---~~me--~s~~F~fsG~-------------------------------k~~ 521 (554)
T PF07919_consen 478 PPSAIVGEPFTLSYTIENPTNHFQTFE---LSME--PSDDFMFSGP-------------------------------KQT 521 (554)
T ss_pred CCccccCcEEEEEEEEECCCCccEEEE---EEEc--cCCCEEEECC-------------------------------CcC
Confidence 345668999999999999988877763 2222 2111111100 023
Q ss_pred eEEEcCCceEEEEEEEEeCceeEEEEEEE
Q 000815 698 DISLGGAETILVQLMVTPKVEGILKIVGV 726 (1269)
Q Consensus 698 ~i~L~p~Etk~v~L~~~P~~~G~L~I~Gv 726 (1269)
.+.|.|.++++++..+.|...|.++.-.+
T Consensus 522 ~~~llP~s~~~~~y~l~pl~~G~~~lP~l 550 (554)
T PF07919_consen 522 TFSLLPFSRHTVRYNLLPLVAGWWILPRL 550 (554)
T ss_pred ceEECCCCcEEEEEEEEEccCCcEECCcE
Confidence 78999999999999999999998865443
No 177
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=31.58 E-value=2.6e+02 Score=30.36 Aligned_cols=82 Identities=20% Similarity=0.136 Sum_probs=54.4
Q ss_pred CCccccCceEEEEEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeee
Q 000815 618 SNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV 697 (1269)
Q Consensus 618 ~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 697 (1269)
....+.|+.++|.+++.|-=+- ...||+|.=..-+.++ .+ +.++.... .
T Consensus 31 ~~~~v~g~~v~V~~~iyN~G~~--~A~dV~l~D~~fp~~~----------------F~---------lvsG~~s~----~ 79 (181)
T PF05753_consen 31 NKYLVEGEDVTVTYTIYNVGSS--AAYDVKLTDDSFPPED----------------FE---------LVSGSLSA----S 79 (181)
T ss_pred cccccCCcEEEEEEEEEECCCC--eEEEEEEECCCCCccc----------------cE---------eccCceEE----E
Confidence 4566789999999999998766 4456666521111100 00 00111011 1
Q ss_pred eEEEcCCceEEEEEEEEeCceeEEEEEEEEEEE
Q 000815 698 DISLGGAETILVQLMVTPKVEGILKIVGVRWRL 730 (1269)
Q Consensus 698 ~i~L~p~Etk~v~L~~~P~~~G~L~I~Gv~~~L 730 (1269)
-=.|.|++..+..+.++|++.|.+.+.....+.
T Consensus 80 ~~~i~pg~~vsh~~vv~p~~~G~f~~~~a~VtY 112 (181)
T PF05753_consen 80 WERIPPGENVSHSYVVRPKKSGYFNFTPAVVTY 112 (181)
T ss_pred EEEECCCCeEEEEEEEeeeeeEEEEccCEEEEE
Confidence 137999999999999999999999998887776
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=31.04 E-value=1e+03 Score=29.17 Aligned_cols=154 Identities=20% Similarity=0.212 Sum_probs=95.8
Q ss_pred CCChHHHHHHhh-hHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHH--HHHHHHhcc-CC---hhHHHHHHHHHH
Q 000815 332 FSSIESQIRILG-DYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEM--MGLTYFMLD-QS---RKEAEYCMENAF 404 (1269)
Q Consensus 332 ~~S~E~q~RrLA-DlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM--~als~ll~~-~~---~~~~~~~le~A~ 404 (1269)
.+..|..+|.|. --+++-|||+.|-+-|+....|= || .|+=-||.. +- +.-..+|-|.|
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------------EtRllGLRgLyleAqr~GareaAr~yAe~A- 180 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------------ETRLLGLRGLYLEAQRLGAREAARHYAERA- 180 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------------HHHHHhHHHHHHHHHhcccHHHHHHHHHHH-
Confidence 346777888874 45677799999998888766542 66 455444432 21 22346777766
Q ss_pred HHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHH-----HHhCcC--c-hhhHHHHHHHHHhhhcCCCCCCchhH
Q 000815 405 TTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYF-----RICGEE--P-LHSAVMLEQASYCYLLSKPPMLHKYG 476 (1269)
Q Consensus 405 ~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~-----r~~~e~--~-l~sAlllEqaA~c~l~~~~p~~RK~A 476 (1269)
|.+... ..+|.|++| |-....|+|+.|.+++- ++.+.+ . .+++||--.|.. -+...+..-|-.|
T Consensus 181 --a~~Ap~--l~WA~~AtL---e~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s-~ldadp~~Ar~~A 252 (531)
T COG3898 181 --AEKAPQ--LPWAARATL---EARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS-LLDADPASARDDA 252 (531)
T ss_pred --HhhccC--CchHHHHHH---HHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HhcCChHHHHHHH
Confidence 555432 367888876 56677899999887653 333433 2 555665555544 3434433334444
Q ss_pred HH-----------HHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 477 FH-----------LVLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 477 f~-----------~vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.+ .|+||..+.+.|..+.+--.+..++.-..
T Consensus 253 ~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 253 LEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 33 57888888888877777776666665544
No 179
>KOG3620 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.85 E-value=3.4e+02 Score=37.11 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=30.3
Q ss_pred cccCCccccCceEEEEEEEECcccCcEEeEEEEEEE
Q 000815 615 FEESNICVAGEPVKVDIEFKNPLQIPISISNISLIC 650 (1269)
Q Consensus 615 ~~~~~~~vvgE~i~V~V~L~NPL~ipL~ls~I~Ll~ 650 (1269)
....+....|..-++.++|.||-++||.|-=|=|..
T Consensus 690 ~l~FPaTalg~~~i~~iTL~NPs~vPV~lQ~iPL~l 725 (1626)
T KOG3620|consen 690 ILPFPATALGQVQIQWITLTNPSQVPVLLQYIPLVL 725 (1626)
T ss_pred CCCCchhhccceeEEEEEecCCCCCceEeeeeeecc
Confidence 344667788999999999999999999998886664
No 180
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=29.44 E-value=1.8e+02 Score=34.74 Aligned_cols=77 Identities=13% Similarity=0.181 Sum_probs=46.2
Q ss_pred cCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCccc
Q 000815 787 YAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISI 866 (1269)
Q Consensus 787 l~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L 866 (1269)
.-|-.-+++++++|.|..||.==...+.+-+|+...+-...+..+|..+-.. . +.+..+..|
T Consensus 279 VPGR~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~-----------------G-L~v~d~~pI 340 (399)
T TIGR03079 279 VPGRALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAE-----------------G-LEVDDQSAI 340 (399)
T ss_pred cCCcEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhc-----------------c-ceeCCCCCc
Confidence 4577789999999999988765455555555544311122222333322100 0 012334579
Q ss_pred CCCCeEEEEEEEEec
Q 000815 867 QGETPLLWPLWYRAA 881 (1269)
Q Consensus 867 ~pGes~~~plwlra~ 881 (1269)
.|||++++.+-.+..
T Consensus 341 ~PGETr~v~v~aqdA 355 (399)
T TIGR03079 341 APGETVEVKMEAKDA 355 (399)
T ss_pred CCCcceEEEEEEehh
Confidence 999999999988753
No 181
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.39 E-value=9.3e+02 Score=27.80 Aligned_cols=107 Identities=13% Similarity=0.112 Sum_probs=69.2
Q ss_pred hHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHHHHHHHHhccCChhHHHHHHHHHHHHHhhcCCCc
Q 000815 335 IESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSG 414 (1269)
Q Consensus 335 ~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~ 414 (1269)
++.+.=..|==+++-|||+.|.+-+..--+.|=++. |.+-|+-|.|=|.+=++.- .++...+..+...|=++..
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~---~~~nA~yWLGe~~y~qg~y-~~Aa~~f~~~~k~~P~s~K-- 213 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNST---YTPNAYYWLGESLYAQGDY-EDAAYIFARVVKDYPKSPK-- 213 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc---ccchhHHHHHHHHHhcccc-hHHHHHHHHHHHhCCCCCC--
Confidence 555555555445677888888888887777776655 7788888888888865422 2344455556566655432
Q ss_pred hhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc
Q 000815 415 QQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP 450 (1269)
Q Consensus 415 ~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~ 450 (1269)
|==+++=.+.++...|+.++|.+.|-.+..+-|
T Consensus 214 ---ApdallKlg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 214 ---APDALLKLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred ---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 223445556677777888888777766665544
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=29.03 E-value=1.2e+02 Score=32.32 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHH
Q 000815 419 TRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRT 498 (1269)
Q Consensus 419 ~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrC 498 (1269)
.+..+-.+-+++.+|.|.+|...+-++..-++ .. +.-..-||.-|.+.|+...|..|
T Consensus 69 ~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----------------dd------p~~~~~ag~c~L~lG~~~~A~~a 125 (157)
T PRK15363 69 FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----------------DA------PQAPWAAAECYLACDNVCYAIKA 125 (157)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----------------CC------chHHHHHHHHHHHcCCHHHHHHH
Confidence 34444455566667777776655555432111 11 11133466667778888888888
Q ss_pred HHHHHHhhc
Q 000815 499 YRSAVSVYK 507 (1269)
Q Consensus 499 y~~a~~vY~ 507 (1269)
++.|+..-.
T Consensus 126 F~~Ai~~~~ 134 (157)
T PRK15363 126 LKAVVRICG 134 (157)
T ss_pred HHHHHHHhc
Confidence 888887763
No 183
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.75 E-value=2e+02 Score=32.79 Aligned_cols=67 Identities=22% Similarity=0.222 Sum_probs=49.0
Q ss_pred hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcC-CCccchHHHHH
Q 000815 451 LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKG-STWSHIKDHVH 519 (1269)
Q Consensus 451 l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~-~~W~~i~dhi~ 519 (1269)
-+.|-+.|+||.||-..+.+..+|= .+.-|.+-|+...-.-||...|.+|.-+-+. ..|+.+.+.++
T Consensus 28 dgaas~yekAAvafRnAk~feKakd--cLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~e 95 (308)
T KOG1585|consen 28 DGAASLYEKAAVAFRNAKKFEKAKD--CLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYE 95 (308)
T ss_pred hhhHHHHHHHHHHHHhhccHHHHHH--HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577889999999987766555555 4677777888877888888888777666654 36777777654
No 184
>PRK13202 ureB urease subunit beta; Reviewed
Probab=28.34 E-value=1.6e+02 Score=28.93 Aligned_cols=72 Identities=17% Similarity=0.166 Sum_probs=40.3
Q ss_pred CCccccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccC
Q 000815 782 LPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFP 861 (1269)
Q Consensus 782 ~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p 861 (1269)
-+-.+..|....++|+++|.|..||. + -||=.|+ +.+. .++|.....++- =+.+|
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGDRPIQ---V-GSHyHF~---E~N~-aL~FDR~~A~G~-----------------RLdIp 65 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGDRPVQ---V-GSHVHLP---QANR-ALSFDRATAHGY-----------------RLDIP 65 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCCCceE---E-ccccchh---hcCc-ceeecHhHhcCc-----------------ccccC
Confidence 34456667567899999999997753 2 2443332 2221 123322221111 11244
Q ss_pred CC--cccCCCCeEEEEEEE
Q 000815 862 EG--ISIQGETPLLWPLWY 878 (1269)
Q Consensus 862 ~~--~~L~pGes~~~plwl 878 (1269)
.+ ...+||+++++.|-=
T Consensus 66 aGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 66 AATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCCeEEECCCCeEEEEEEE
Confidence 33 478999999998853
No 185
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=28.06 E-value=2.1e+02 Score=32.29 Aligned_cols=57 Identities=19% Similarity=0.270 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
...-|+-|.+.|+..+|-+-|++|+.+=.+.| .|+..-|-..+..|.++.|...|.+
T Consensus 72 ~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G------dVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 72 HLVRAHYYQKLGENDLADESYRKALSLAPNNG------DVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred HHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc------chhhhhhHHHHhCCChHHHHHHHHH
Confidence 34456899999999999999999999976654 6777788888888999999888877
No 186
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=27.59 E-value=1.9e+02 Score=34.68 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=44.7
Q ss_pred EEEEEccCCccccCCcEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCC
Q 000815 775 LEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMP 854 (1269)
Q Consensus 775 Lev~~~~~P~~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~ 854 (1269)
+.+.+.+.--. .-|-...++++++|.|+.|+.==...+.+-+|+...-..+ +...|..+..
T Consensus 249 V~~~v~~A~Y~-vpgR~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~-~~~~P~~l~A----------------- 309 (381)
T PF04744_consen 249 VKVKVTDATYR-VPGRTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTD-DPDYPDELLA----------------- 309 (381)
T ss_dssp EEEEEEEEEEE-SSSSEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS--S---TTTEE-----------------
T ss_pred eEEEEeccEEe-cCCcEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccC-CCCCchhhhc-----------------
Confidence 66666554334 5678889999999999999865555555555543221111 1112221110
Q ss_pred CceeccCCCcccCCCCeEEEEEEEEe
Q 000815 855 QAVFSFPEGISIQGETPLLWPLWYRA 880 (1269)
Q Consensus 855 ~~v~~~p~~~~L~pGes~~~plwlra 880 (1269)
..=+.+.....|+|||+.++.+-.+.
T Consensus 310 ~~gL~vs~~~pI~PGETrtl~V~a~d 335 (381)
T PF04744_consen 310 ERGLSVSDNSPIAPGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEES--S-B-TT-EEEEEEEEE-
T ss_pred cCcceeCCCCCcCCCceEEEEEEeeh
Confidence 00011333458999999999999874
No 187
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=27.56 E-value=2e+02 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=24.7
Q ss_pred cCceEEEEEEEECcccCcEEeEEEEEEEEe
Q 000815 623 AGEPVKVDIEFKNPLQIPISISNISLICEL 652 (1269)
Q Consensus 623 vgE~i~V~V~L~NPL~ipL~ls~I~Ll~~~ 652 (1269)
.+-.+.+.+.+.||-.+|+.+.++.-....
T Consensus 13 ~~~~~~l~l~v~NPN~~~l~~~~~~y~l~~ 42 (100)
T smart00769 13 LEIEIVLKVKVQNPNPFPIPVNGLSYDLYL 42 (100)
T ss_pred eEEEEEEEEEEECCCCCccccccEEEEEEE
Confidence 345688899999999999999999955544
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=27.51 E-value=2.4e+02 Score=28.46 Aligned_cols=58 Identities=21% Similarity=0.164 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 481 LSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 481 LAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
-.|..|...|....|+..|++|+.. |.. .....-....+|..+..+|++++|+..|-.
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL~-~~~~~~a~i~lastlr~LG~~deA~~~L~~ 63 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAA--GLS-GADRRRALIQLASTLRNLGRYDEALALLEE 63 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3566788899999999999999983 322 122334677899999999999999988865
No 189
>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.46 E-value=2.3e+02 Score=31.22 Aligned_cols=70 Identities=19% Similarity=0.241 Sum_probs=46.1
Q ss_pred cEEEEEEEEEecCccccceEEEEecCCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCceeccCCCcccCCC
Q 000815 790 DLRHLVLELKNQSDFSVKNLKMKVSHPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGE 869 (1269)
Q Consensus 790 Ei~~~~l~L~N~g~~pv~~l~l~~s~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~L~pG 869 (1269)
+.....++|+|....++ ..+|+++.|..+++. |..+.|.||
T Consensus 25 ~~~~~~l~l~N~t~~~v-aFKvktT~p~~y~Vr--------------------------------------P~~G~i~p~ 65 (218)
T KOG0439|consen 25 EQVKCSLTLKNPTKLRV-AFKVKTTAPKLYCVR--------------------------------------PNGGVIDPG 65 (218)
T ss_pred ceEEEEEEEecCCCCce-EEEEEcCCCCeEEEc--------------------------------------CCcceECCC
Confidence 57889999999955333 355666666555433 233578999
Q ss_pred CeEEEEEEEEec--CCcee--EEEEEEEEecCC
Q 000815 870 TPLLWPLWYRAA--VPGKI--SLSITIYYEMGD 898 (1269)
Q Consensus 870 es~~~plwlra~--~~G~~--~l~~LfyYe~~~ 898 (1269)
+++++++++++. .+... .-+|+|+|-...
T Consensus 66 ~t~~i~v~~q~~~~~P~d~~~r~kF~v~~~~~~ 98 (218)
T KOG0439|consen 66 STVEIEVTHQPFEKSPPDFKSRHKFLIQSLKAP 98 (218)
T ss_pred CcEEEEEEeccCccCchhhcccceEEEEEEecC
Confidence 999999988873 23333 357777765443
No 190
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=27.35 E-value=1.3e+02 Score=32.41 Aligned_cols=57 Identities=14% Similarity=0.154 Sum_probs=41.2
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 482 SGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 482 Ag~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
=|+.|.+.|....|++||.++..-.-+. .-.-++.+.+-|.+...|+......++-+
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~---~~~id~~l~~irv~i~~~d~~~v~~~i~k 98 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSP---GHKIDMCLNVIRVAIFFGDWSHVEKYIEK 98 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCH---HHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 4678999999999999999977643222 13344567888888888888876655543
No 191
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=27.12 E-value=5.6e+02 Score=25.90 Aligned_cols=32 Identities=13% Similarity=0.149 Sum_probs=24.5
Q ss_pred ccCCCcccCCCCeEEEEEEEEecC---CceeEEEE
Q 000815 859 SFPEGISIQGETPLLWPLWYRAAV---PGKISLSI 890 (1269)
Q Consensus 859 ~~p~~~~L~pGes~~~plwlra~~---~G~~~l~~ 890 (1269)
.+|..+.|.||+++++++-|..|. .|.+---|
T Consensus 82 ~~~~~Vtl~~~~sk~V~~~i~~P~~~f~G~ilGGi 116 (121)
T PF06030_consen 82 KIPKEVTLPPNESKTVTFTIKMPKKAFDGIILGGI 116 (121)
T ss_pred cCCcEEEECCCCEEEEEEEEEcCCCCcCCEEEeeE
Confidence 456568999999999999999994 56544333
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=26.67 E-value=5.5e+02 Score=32.56 Aligned_cols=68 Identities=18% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHhcCchHHHHHHHHHHhCcCchhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000815 426 VEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 505 (1269)
Q Consensus 426 ~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~v 505 (1269)
+.+....|++++|...+-|+..-+ -.++-+++-|.-|...|+...|...|.+|+..
T Consensus 427 a~~~~~~g~~~~A~~~l~rAl~L~------------------------ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 427 AVQALVKGKTDEAYQAINKAIDLE------------------------MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcC------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444455688888877766654311 13455778888999999999999999999866
Q ss_pred hcCC-CccchHHH
Q 000815 506 YKGS-TWSHIKDH 517 (1269)
Q Consensus 506 Y~~~-~W~~i~dh 517 (1269)
=... .|...+.-
T Consensus 483 ~P~~pt~~~~~~~ 495 (517)
T PRK10153 483 RPGENTLYWIENL 495 (517)
T ss_pred CCCCchHHHHHhc
Confidence 4432 24444433
No 193
>PTZ00128 cytochrome c oxidase assembly protein-like; Provisional
Probab=26.58 E-value=1.5e+02 Score=33.38 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=22.7
Q ss_pred cccCCcEEEEEEEEEecCccccceEEE
Q 000815 785 RAYAGDLRHLVLELKNQSDFSVKNLKM 811 (1269)
Q Consensus 785 ~ll~GEi~~~~l~L~N~g~~pv~~l~l 811 (1269)
.+.-||...+.-+.+|.+..|+....+
T Consensus 133 ~V~pGE~~lv~Y~a~N~sd~~i~G~A~ 159 (232)
T PTZ00128 133 EVLPGETALAFYRAKNRSDKPVIGVAT 159 (232)
T ss_pred EEcCCCeEEEEEEEECCCCCcEEEEEe
Confidence 568899999999999999877765544
No 194
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=26.03 E-value=1.7e+03 Score=29.83 Aligned_cols=49 Identities=18% Similarity=0.168 Sum_probs=31.9
Q ss_pred CChHHHHHHhhh---------HHHHhhCHHHHHHHHHHHhhhhccccchhhhhchHHH
Q 000815 333 SSIESQIRILGD---------YAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEM 381 (1269)
Q Consensus 333 ~S~E~q~RrLAD---------laFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM 381 (1269)
.+.|.-+||.-| |.=-.|+-+.|+++|++++.-|..-+--.+..-.++.
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kA 957 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKA 957 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHH
Confidence 356666666555 4445789999999999999887654443344434443
No 195
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=25.81 E-value=1.1e+02 Score=22.05 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHH
Q 000815 517 HVHFHIGQWYAVLGMHDIAVAHM 539 (1269)
Q Consensus 517 hi~~~Lgr~~~~Lg~~~~Av~hl 539 (1269)
+.++.||+.+...|+++.|.+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 35678999999999999998876
No 196
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=25.74 E-value=1.2e+02 Score=23.31 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=21.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
+-.-|..|...|+...|+.+|.+++.+++..
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3445677888889999999999998888743
No 197
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=25.48 E-value=2.2e+02 Score=26.79 Aligned_cols=21 Identities=33% Similarity=0.395 Sum_probs=18.2
Q ss_pred eEEEEEEcCCCccEeEEEEec
Q 000815 1115 NLKMTIYNSSDAAMFVRVNTF 1135 (1269)
Q Consensus 1115 ~~~l~l~N~s~~~~~~~i~~~ 1135 (1269)
.|.|+|.|.....+.|+|.-.
T Consensus 21 ~l~l~l~N~g~~~~~~~v~~~ 41 (89)
T PF05506_consen 21 NLRLTLSNPGSAAVTFTVYDN 41 (89)
T ss_pred EEEEEEEeCCCCcEEEEEEeC
Confidence 689999999999999988863
No 198
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=25.45 E-value=1.6e+02 Score=34.43 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=31.7
Q ss_pred CCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHH
Q 000815 469 PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHV 518 (1269)
Q Consensus 469 ~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi 518 (1269)
+|+.-|+.-. -|-.|...|...+|++.|+.|+.++. .|.....+|
T Consensus 145 Dp~yskay~R---LG~A~~~~gk~~~A~~aykKaLeldP--~Ne~~K~nL 189 (304)
T KOG0553|consen 145 DPHYSKAYGR---LGLAYLALGKYEEAIEAYKKALELDP--DNESYKSNL 189 (304)
T ss_pred ChHHHHHHHH---HHHHHHccCcHHHHHHHHHhhhccCC--CcHHHHHHH
Confidence 3444444333 35668889999999999999999986 566555443
No 199
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.33 E-value=7.2e+02 Score=31.84 Aligned_cols=120 Identities=13% Similarity=0.131 Sum_probs=75.0
Q ss_pred HHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhh----chHHH--HHHHHHhccCChhHHHHHHHHHHHHHhhcC
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYA----GVQEM--MGLTYFMLDQSRKEAEYCMENAFTTYAKIG 411 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A----~a~EM--~als~ll~~~~~~~~~~~le~A~~~Y~~~~ 411 (1269)
..=-+|-+.+..|+++-|..+|.... .+|++-- --.+| ++++++.....+......+++|+.-|.+..
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~------~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~ 451 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFL------ESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQ 451 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh------hhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhc
Confidence 44456788999999999999999766 3554321 11223 334455555555567789999999998664
Q ss_pred CCchhhHHHHHHHHHHHHHhc-CchHHHHHHHHHHhCcCc-hhhHHHHHHHHHhhh
Q 000815 412 SSGQQNATRCGLWWVEMLKAR-HQYKDAATVYFRICGEEP-LHSAVMLEQASYCYL 465 (1269)
Q Consensus 412 ~~~~~~A~R~~ll~~e~l~~~-~~~~eaa~~l~r~~~e~~-l~sAlllEqaA~c~l 465 (1269)
.- .-+++|++.-+.-++.| |.-.||.+.|-.+....+ --.+|.-==+|+|++
T Consensus 452 t~--s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 452 TG--SIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred cc--chHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 22 47889988776666655 445677777766664322 112222222566665
No 200
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.64 E-value=80 Score=37.35 Aligned_cols=42 Identities=24% Similarity=0.255 Sum_probs=32.2
Q ss_pred HhhhHHHHhhCHHHHHHHHHHHhh-hhccccchhhhhchHHHH
Q 000815 341 ILGDYAFMLRDYELALSNYRLIST-DYKLDKAWKRYAGVQEMM 382 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~~l~~-Df~~Dkaw~~~A~a~EM~ 382 (1269)
=+|--+|-||||+.|...|..+.. |=-..+-|.++|.|.-..
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyL 104 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYL 104 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHH
Confidence 467889999999999999998775 333446688888776543
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=24.34 E-value=3.3e+02 Score=27.56 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
...+..+...|....|++.+..++.... ..+.++..|-+.+..+|+...|++++-.
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP------~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDP------YDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHST------T-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 3345567789999999999999999976 6899999999999999999999977654
No 202
>COG3175 COX11 Cytochrome oxidase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=24.32 E-value=3.2e+02 Score=29.58 Aligned_cols=26 Identities=19% Similarity=0.241 Sum_probs=21.1
Q ss_pred ccCCcEEEEEEEEEecCccccceEEE
Q 000815 786 AYAGDLRHLVLELKNQSDFSVKNLKM 811 (1269)
Q Consensus 786 ll~GEi~~~~l~L~N~g~~pv~~l~l 811 (1269)
+.-||.-.+.-+-+|.+..|+..-.+
T Consensus 89 v~pGet~~~~y~a~N~sd~~itg~A~ 114 (195)
T COG3175 89 VRPGETNLIFYEAENLSDKPITGQAT 114 (195)
T ss_pred eccCceEEEEEEEecCCCCCceeEEe
Confidence 37799999999999999877765433
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=24.25 E-value=1.5e+02 Score=35.98 Aligned_cols=64 Identities=17% Similarity=0.194 Sum_probs=52.7
Q ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHH
Q 000815 472 LHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVA 537 (1269)
Q Consensus 472 ~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~ 537 (1269)
.-..++-+.+-|+|..|.|..+--..+++.|++|=- .=-....-|+-.||..++.|++...|++
T Consensus 13 q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~ 76 (639)
T KOG1130|consen 13 QDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALK 76 (639)
T ss_pred hhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHh
Confidence 344577789999999999999999999999999832 2123445689999999999999999986
No 204
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=23.64 E-value=2.7e+02 Score=25.30 Aligned_cols=49 Identities=10% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhCC-CchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHH
Q 000815 478 HLVLSGDRYKKCD-QINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYA 527 (1269)
Q Consensus 478 ~~vLAg~ry~kag-q~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~ 527 (1269)
.+--|-++...-| ..+......+..+.+|.+- |..|++-=+..|....+
T Consensus 10 R~daA~dam~~lG~~~~~v~~vl~~LL~lY~~n-W~lIEed~Y~~L~dai~ 59 (65)
T PF10440_consen 10 RIDAALDAMRQLGFSKKQVRPVLKNLLKLYDGN-WELIEEDNYRVLADAIF 59 (65)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-chhhhcccHHHHHHHHH
Confidence 3455666777778 5667777889999999766 99999877666665443
No 205
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=23.34 E-value=6.5e+02 Score=33.09 Aligned_cols=109 Identities=19% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHhccCChhHHHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcCc--hhhHHHHHHH
Q 000815 383 GLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEEP--LHSAVMLEQA 460 (1269)
Q Consensus 383 als~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~--l~sAlllEqa 460 (1269)
+..+++..++..++-.|+.+|...| .+.-+..-+.+-++-.+|.+.||-..+.-+..-+| +.+-.-+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Al--- 724 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTAL--- 724 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHH---
Q ss_pred HHhhhcCC-----------------CCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Q 000815 461 SYCYLLSK-----------------PPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSV 505 (1269)
Q Consensus 461 A~c~l~~~-----------------~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~v 505 (1269)
|-|++... +|..+++++.+ |+-+.+.|+.+.|..||..|++.
T Consensus 725 a~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~L---G~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 725 AELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYL---GEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHH---HHHHHHccchHHHHHHHHHHHhh
No 206
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=23.13 E-value=4.3e+02 Score=24.60 Aligned_cols=51 Identities=14% Similarity=0.095 Sum_probs=34.6
Q ss_pred EEEEECcccCcEEeEEEEEEEEeccCCcccccCCCCCccccccccccccccccccCCCCCCceeeeeeeEEEcCCceEEE
Q 000815 630 DIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILV 709 (1269)
Q Consensus 630 ~V~L~NPL~ipL~ls~I~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~i~L~p~Etk~v 709 (1269)
.|.++||=.+++.++++.....+... .++ -......+.+.++++..+
T Consensus 1 ~l~v~NPN~~~i~~~~~~~~v~~~g~-------------------~v~--------------~~~~~~~~~i~~~~~~~v 47 (101)
T PF03168_consen 1 TLSVRNPNSFGIRYDSIEYDVYYNGQ-------------------RVG--------------TGGSLPPFTIPARSSTTV 47 (101)
T ss_dssp EEEEEESSSS-EEEEEEEEEEEESSS-------------------EEE--------------EEEECE-EEESSSCEEEE
T ss_pred CEEEECCCceeEEEeCEEEEEEECCE-------------------EEE--------------CccccCCeEECCCCcEEE
Confidence 47899999999999999998876321 000 012235799999999987
Q ss_pred EEEE
Q 000815 710 QLMV 713 (1269)
Q Consensus 710 ~L~~ 713 (1269)
.+.+
T Consensus 48 ~~~v 51 (101)
T PF03168_consen 48 PVPV 51 (101)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7643
No 207
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=23.09 E-value=3.7e+02 Score=31.34 Aligned_cols=80 Identities=23% Similarity=0.229 Sum_probs=49.1
Q ss_pred CCC-cceeEeEEEEEEcCCCccEeEEEEecCCCCCCCCCcccCCCCCCCCCCCCCCcccccccccccccccCCccccccC
Q 000815 1107 FNA-SFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRS 1185 (1269)
Q Consensus 1107 f~~-~~c~v~~~l~l~N~s~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1185 (1269)
|++ .-.....++++.|.++.+++|+|.=.-+.+. ..+||+..... .++
T Consensus 236 ~~~~~~~~~~~~itv~N~~~~~v~v~v~d~iPvs~---------------------------~~~I~V~~~~~----~~~ 284 (317)
T PF13598_consen 236 FGKSQRRTYEYTITVRNNKDEPVTVTVEDQIPVSE---------------------------DEDIKVELLEP----PEP 284 (317)
T ss_pred ccccEEEEEEEEEEEECCCCCCEEEEEEeCCCCCC---------------------------CceEEEEEcCC----CCC
Confidence 344 5557788999999999999988874332211 13344333211 101
Q ss_pred CccCcCCceEEeccccceeEecCCceeeEeeEEEEecC
Q 000815 1186 SLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSP 1223 (1269)
Q Consensus 1186 ~~~~~~~~f~W~g~~~~~~~l~p~~~~~~~L~~~~~~~ 1223 (1269)
..-+..+-+.| ++.|+|++..+|.+..-+-.|
T Consensus 285 ~~~~~~g~~~W------~~~l~~g~~~~l~~~y~v~~P 316 (317)
T PF13598_consen 285 NEDEKDGILEW------KVTLPPGESRTLEFSYEVEYP 316 (317)
T ss_pred cccCCCCEEEE------EEEECCCCEEEEEEEEEEEcC
Confidence 11223555666 599999999999988665444
No 208
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=23.00 E-value=2.4e+02 Score=34.95 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=55.9
Q ss_pred hhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 000815 474 KYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 474 K~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~ 541 (1269)
+-.+.+.++++-+.++|+.+.|..-++.|+..+....| +...+|+.+..+|++++|++.+-+
T Consensus 338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPL------LQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------HHHHHHHHHHhcCChHHHHHHHHH
Confidence 66677999999999999999999999999999998866 457899999999999999998866
No 209
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=21.75 E-value=1.4e+02 Score=26.60 Aligned_cols=33 Identities=12% Similarity=0.229 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhc
Q 000815 475 YGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYK 507 (1269)
Q Consensus 475 ~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~ 507 (1269)
.|+-++--|-.+.+.|....|+.||..+...+.
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 467788889999999999999999999988763
No 210
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.72 E-value=4.3e+02 Score=30.50 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=58.1
Q ss_pred HHHHHHhhcCCCchhhHHHHHHHHHHHHHhcCchHHHHHHHHHHhCcC---c-hhhHHHHHHHHHhhhcCCCCCCchhHH
Q 000815 402 NAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGEE---P-LHSAVMLEQASYCYLLSKPPMLHKYGF 477 (1269)
Q Consensus 402 ~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~---~-l~sAlllEqaA~c~l~~~~p~~RK~Af 477 (1269)
.++..|++.-+++ .|+-++-.|..|.+-..|.|++|+..+.++..+- + ..-|||-
T Consensus 162 ~~F~~fi~~YP~s-~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK-------------------- 220 (262)
T COG1729 162 QAFQAFIKKYPNS-TYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK-------------------- 220 (262)
T ss_pred HHHHHHHHcCCCC-cccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH--------------------
Confidence 4566677665443 7888999999999999999999999888876532 1 3333332
Q ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 478 HLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 478 ~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
=|.--...|+...|-+.|+++.+-|.+.
T Consensus 221 ----lg~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 221 ----LGVSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred ----HHHHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 2233345567777888888888888764
No 211
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=21.68 E-value=7.1e+02 Score=28.62 Aligned_cols=53 Identities=17% Similarity=0.231 Sum_probs=46.6
Q ss_pred HHHHhCCCchHHHHHHHHHHHhhcCCCccchHHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 000815 484 DRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEK 542 (1269)
Q Consensus 484 ~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgr~~~~Lg~~~~Av~hll~~ 542 (1269)
--|.+.|....|-+-|.+|+++... +.-+...||-.++.-|+.+.|.+.++..
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~~~------~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELAPN------EPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhccC------CchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 3678889999999999999999874 4577889999999999999999999883
No 212
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=21.63 E-value=1.4e+02 Score=24.08 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
..-|.-|...|+...|.++|++++....+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~ 34 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDD 34 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 344778889999999999999999987654
No 213
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.34 E-value=4.2e+02 Score=32.33 Aligned_cols=106 Identities=20% Similarity=0.209 Sum_probs=66.0
Q ss_pred CChHHHHHHhhhHHHHhhCHHHHHHHHHHHhhhhccccchhhhh-chHHHHHHHHHhccCChhHHHHHHHHHHHH-Hhhc
Q 000815 333 SSIESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYA-GVQEMMGLTYFMLDQSRKEAEYCMENAFTT-YAKI 410 (1269)
Q Consensus 333 ~S~E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A-~a~EM~als~ll~~~~~~~~~~~le~A~~~-Y~~~ 410 (1269)
+|+-.-++-|||.+.+.|+...|+..|-- .|||=.. -+|.+ -|.+.+-||..|++-. .+..|...|..+ |.++
T Consensus 147 EsiRra~~Dl~dhy~~cG~l~~Alr~YsR-~RdYCTs--~khvInm~ln~i~VSI~~~nw~--hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 147 ESIRRALEDLGDHYLDCGQLDNALRCYSR-ARDYCTS--AKHVINMCLNLILVSIYMGNWG--HVLSYISKAESTPDANE 221 (466)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHhhhhh-hhhhhcc--hHHHHHHHHHHHHHHHhhcchh--hhhhHHHHHHhCchhhh
Confidence 57778899999999999999999999988 5666531 12333 4667778888886432 233344444433 1111
Q ss_pred CCC-chhhHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 000815 411 GSS-GQQNATRCGLWWVEMLKARHQYKDAATVYFRI 445 (1269)
Q Consensus 411 ~~~-~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~ 445 (1269)
... ....-++|+-=.+++.. +.|.+|++.++..
T Consensus 222 ~~~q~v~~kl~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 110 00112667665555543 4888988887653
No 214
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=21.08 E-value=1.1e+03 Score=29.69 Aligned_cols=124 Identities=16% Similarity=0.122 Sum_probs=0.0
Q ss_pred hHHH---HHHHHHhc----cCChhHHHHHHHHHHHHHhhcC--------------------CCchhhHHHHHHHHHHHHH
Q 000815 378 VQEM---MGLTYFML----DQSRKEAEYCMENAFTTYAKIG--------------------SSGQQNATRCGLWWVEMLK 430 (1269)
Q Consensus 378 a~EM---~als~ll~----~~~~~~~~~~le~A~~~Y~~~~--------------------~~~~~~A~R~~ll~~e~l~ 430 (1269)
|+|+ ||-++.++ .++..+.+.++..|+..=.... .+...|+-|- .+-+++
T Consensus 194 ALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrR---LAmCar 270 (539)
T PF04184_consen 194 ALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRR---LAMCAR 270 (539)
T ss_pred HHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHH---HHHHHH
Q ss_pred hcCchHHHHHHHHHHhCcCc-hhhHHHHHHHHHhhhcCCCCCCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 431 ARHQYKDAATVYFRICGEEP-LHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 431 ~~~~~~eaa~~l~r~~~e~~-l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
..|..+||++.+.-++-+.+ +.---+-|-...|+|- +.|=+...-+|+- |......+.|..||..|+--++..
T Consensus 271 klGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe----lq~Yad~q~lL~k--YdDi~lpkSAti~YTaALLkaRav 344 (539)
T PF04184_consen 271 KLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE----LQAYADVQALLAK--YDDISLPKSATICYTAALLKARAV 344 (539)
T ss_pred HhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh----cCCHHHHHHHHHH--hccccCCchHHHHHHHHHHHHHhh
Q ss_pred C
Q 000815 510 T 510 (1269)
Q Consensus 510 ~ 510 (1269)
+
T Consensus 345 ~ 345 (539)
T PF04184_consen 345 G 345 (539)
T ss_pred c
No 215
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=20.94 E-value=1.3e+02 Score=35.54 Aligned_cols=31 Identities=29% Similarity=0.491 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhhcCC
Q 000815 479 LVLSGDRYKKCDQINHAIRTYRSAVSVYKGS 509 (1269)
Q Consensus 479 ~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~ 509 (1269)
+---|+.|.|.|....|+.||..++.+|..-
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N 130 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHN 130 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCC
Confidence 3446899999999999999999999999743
No 216
>PF04425 Bul1_N: Bul1 N terminus; InterPro: IPR007519 This domain is the N terminus of Saccharomyces cerevisiae (Baker's yeast) Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. The C terminus is IPR007520 from INTERPRO.
Probab=20.73 E-value=4.9e+02 Score=32.21 Aligned_cols=117 Identities=11% Similarity=0.156 Sum_probs=70.5
Q ss_pred ceEEEEecCCCeEEEEEccCC---ccccCCcEEEEEEEEEecCccccc--eEEEEecCCceEEeCCCCCCCc--------
Q 000815 763 DLKFIVIKSLPKLEGLIHPLP---ERAYAGDLRHLVLELKNQSDFSVK--NLKMKVSHPRFLSIGNRDDMTK-------- 829 (1269)
Q Consensus 763 rL~~~V~~~~P~Lev~~~~~P---~~ll~GEi~~~~l~L~N~g~~pv~--~l~l~~s~P~~~~~g~~~~~~~-------- 829 (1269)
.+++.|++..|...+ =.... -+.=.|.+..-.|+|+|.+..||. =++|.+- ..+++.+......
T Consensus 135 ~I~I~~Tk~v~~~g~-p~~id~~l~Ey~qGD~I~GyvtI~N~S~~pIpFdMFyV~lE--G~~~v~~~~~~~~~~~~~~kk 211 (438)
T PF04425_consen 135 EIEIYVTKDVGKPGK-PPEIDPSLKEYTQGDIIHGYVTIENTSSKPIPFDMFYVSLE--GTISVVDSKSPSSKKPRTVKK 211 (438)
T ss_pred EEEEEEeccCCCCCC-CcccCcccccccCCCEEEEEEEEEECCCCCcccceEEEEEE--EEEEEcccccccccccHHHHH
Confidence 366777888888766 22222 266789999999999999999884 4555553 3566666521110
Q ss_pred -----cchhhhhcccccc---ccccCCCCCCCCCceeccCCCcccCCCCeEEEEEEEEecC
Q 000815 830 -----EFPACLQKMTNAE---QSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAV 882 (1269)
Q Consensus 830 -----~~p~~l~~~~~~~---~~~~~~~~~~~~~~v~~~p~~~~L~pGes~~~plwlra~~ 882 (1269)
.+.++-.+..... .....+.....++..+.+|....|+||.+-..+++++=|.
T Consensus 212 FL~M~D~sASws~~~i~~~~~~~~~~~~~Dp~Dgt~lgl~~~r~l~p~~~Yk~fF~FkiP~ 272 (438)
T PF04425_consen 212 FLRMFDFSASWSYANIDRLVGDNYCPGEVDPYDGTYLGLPNKRILEPGVKYKKFFTFKIPE 272 (438)
T ss_pred HHHhhcceecccccccccccccccCCccccCCCCeeEeCCCCceecCCCeEeceeEEeCCc
Confidence 1111111100000 0011111222345677788888999999999999999774
No 217
>KOG3865 consensus Arrestin [Signal transduction mechanisms]
Probab=20.70 E-value=2.4e+02 Score=32.91 Aligned_cols=70 Identities=17% Similarity=0.190 Sum_probs=48.7
Q ss_pred cccCCcEEEEEEEEEecCccccceEEEEec-CCceEEeCCCCCCCccchhhhhccccccccccCCCCCCCCCcee--ccC
Q 000815 785 RAYAGDLRHLVLELKNQSDFSVKNLKMKVS-HPRFLSIGNRDDMTKEFPACLQKMTNAEQSVAGGNFNKMPQAVF--SFP 861 (1269)
Q Consensus 785 ~ll~GEi~~~~l~L~N~g~~pv~~l~l~~s-~P~~~~~g~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~v~--~~p 861 (1269)
.-|.||-..+++.++|.++..|+.|++.+- +.+.+.|.... - ...|. ...
T Consensus 205 iYyHGE~isvnV~V~NNsnKtVKkIK~~V~Q~adi~Lfs~aq-y--------------------------~~~VA~~E~~ 257 (402)
T KOG3865|consen 205 IYYHGEPISVNVHVTNNSNKTVKKIKISVRQVADICLFSTAQ-Y--------------------------KKPVAMEETD 257 (402)
T ss_pred heecCCceeEEEEEecCCcceeeeeEEEeEeeceEEEEeccc-c--------------------------cceeeeeecc
Confidence 468999999999999999999999998774 34444443321 0 01121 123
Q ss_pred CCcccCCCCeEEEEEEEEec
Q 000815 862 EGISIQGETPLLWPLWYRAA 881 (1269)
Q Consensus 862 ~~~~L~pGes~~~plwlra~ 881 (1269)
++..+.||.+++-.++|-.-
T Consensus 258 eGc~v~Pgstl~Kvf~l~Pl 277 (402)
T KOG3865|consen 258 EGCPVAPGSTLSKVFTLTPL 277 (402)
T ss_pred cCCccCCCCeeeeeEEechh
Confidence 55688999999888888643
No 218
>PF00502 Phycobilisome: Phycobilisome protein; InterPro: IPR012128 Cyanobacteria and red algae harvest light through water-soluble complexes, called phycobilisomes, which are attached to the outer face of the thylakoid membrane []. These complexes are capable of transferring the absorbed energy to the photosynthetic reaction centre with greater than 95% efficiency. Phycobilisomes contain various photosynthetic light harvesting proteins known as biliproteins, and linker proteins which help assemble the structure. The two main structural elements of the complex are a core located near the photosynthetic reaction centre, and rods attached to this core. Allophycocyanin is the major component of the core, while the rods contain phycocyanins, phycoerythrins and linker proteins. The rod biliproteins harvest photons, with the excitation energy being passed through the rods into the allophycocyanin in the core. Other core biliproteins subsequently pass this energy to chlorophyll within the thylakoid membrane. This entry represents the alpha and beta subunits found in biliproteins from cyanobacteria and red algae. Structural studies indicate that the basic structural unit of most biliproteins is a heterodimer composed of these alpha and beta subunits [, , , ]. The full protein is a ring-like trimer assembly of these heterodimers. Each subunit of the heterodimer has eight helices and binds chromophores through thioester bonds formed at particular cysteine residues. These chromophores, also known as bilins, are open-chain tetrapyrroles whose number and type vary with the particular biliprotein eg R-phyocerythrin binds five phycoerythrobilins per heterodimer, while allophycocyanin binds two phycocyanobilins per heterodimer.; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2VML_I 2VJR_A 1KTP_B 3L0F_B 1JBO_B 3KVS_B 1PHN_B 3BRP_B 2C7K_B 2C7L_B ....
Probab=20.43 E-value=4.6e+02 Score=27.68 Aligned_cols=134 Identities=15% Similarity=0.181 Sum_probs=65.0
Q ss_pred CcccCChhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhccCcCchhhhhHhhhcCCCCCCCCCCCCCCccCCChHHH
Q 000815 259 LGSFLNNDDFSEIKDVMQELASKHIIPYMEQKIRVLNQQVSATRKGFRNQLKNLWWRKGKEETSDSPNGPMYTFSSIESQ 338 (1269)
Q Consensus 259 ~~~~L~~~D~~~ir~fv~e~v~~~liP~mEr~I~~lne~v~~~RKgi~~~l~~~w~r~~k~~~~~~~~~~~Y~~~S~E~q 338 (1269)
.+.||+..|++.|+.|++.--.+- +-++.++++.. .|-.+-.+..+.+ .+. -..++|+.|+..--+.-
T Consensus 10 egRyls~~EL~~l~~~~~~~~~Rl------~aa~~L~~~a~----~IV~~A~~~l~~~-~P~-l~~~gg~~y~~~~~~~C 77 (157)
T PF00502_consen 10 EGRYLSDGELQALKGYFQSANARL------EAAEKLRDNAS----EIVDQAAQKLFEK-YPD-LTQPGGNLYPSRRREAC 77 (157)
T ss_dssp TTSECEHHHHHHHHHHHHTHHHHH------HHHHHHHHTHH----HHHHHHHHHHHHH-SGG-GGSTTSTTSSHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHhHHHHH------HHHHHHHHhHH----HHHHHHHHHHHHh-ccc-cccccccccchHHHHHH
Confidence 467899999999999987654322 12222332211 2222222111221 011 11234566776666777
Q ss_pred HH------HhhhHHHHhhCHHHHHHH----HHHHhhhhccccchhhhhchHHHHHHH-HHhccCChhHHHHHHHHHHH
Q 000815 339 IR------ILGDYAFMLRDYELALSN----YRLISTDYKLDKAWKRYAGVQEMMGLT-YFMLDQSRKEAEYCMENAFT 405 (1269)
Q Consensus 339 ~R------rLADlaFml~DY~~A~s~----Y~~l~~Df~~Dkaw~~~A~a~EM~als-~ll~~~~~~~~~~~le~A~~ 405 (1269)
.| |++=++++.||-+.=-.. ++.+-+-|+-.-+| +..+-.+|-..+ ..|..+...++..|||-+++
T Consensus 78 ~RD~~~~LR~i~ya~l~gd~~~l~~~~l~~l~ei~~al~vp~~~-~v~al~~lk~~~~~~l~~e~~~~~~~yfD~~i~ 154 (157)
T PF00502_consen 78 WRDIWHYLRYITYAMLAGDTDPLDERGLNGLREIYRALGVPIDA-YVEALQCLKEAALQLLSPEAAAEIAPYFDYLIN 154 (157)
T ss_dssp HHHHHHHHHHHHHHHHHTSSHHHHHHTTTTHHHHHHHHT--HHH-HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHcCCchH-HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 77 666677777775443322 33444444332222 334444553332 33333333455667775554
No 219
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=20.40 E-value=1.1e+02 Score=26.82 Aligned_cols=26 Identities=23% Similarity=0.082 Sum_probs=21.3
Q ss_pred hhhHHHHhhCHHHHHHHHHHHhhhhc
Q 000815 342 LGDYAFMLRDYELALSNYRLISTDYK 367 (1269)
Q Consensus 342 LADlaFml~DY~~A~s~Y~~l~~Df~ 367 (1269)
|+..++..+||+.|...++.+.+-.-
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p 26 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP 26 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc
Confidence 56788999999999999997776443
Done!