Query 000815
Match_columns 1269
No_of_seqs 226 out of 311
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 16:27:53 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000815.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_586-590//hhsearch_pdb/000815hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1s_A PINS, partner of inscut 1.0 1 1 54.2 19.3 62 480-541 267-328 (411)
2 3sf4_A G-protein-signaling mod 1.0 1 1 53.2 21.1 202 338-541 89-332 (406)
3 2ifu_A Gamma-SNAP; membrane fu 1.0 1 1 53.1 18.2 187 336-543 36-222 (307)
4 3ulq_A Response regulator aspa 1.0 1 1 52.1 19.4 182 341-541 108-289 (383)
5 3ro2_A PINS homolog, G-protein 1.0 1 1 51.7 19.6 66 476-541 263-328 (338)
6 4a1s_A PINS, partner of inscut 1.0 1 1 51.4 21.0 202 338-541 128-368 (411)
7 3q15_A PSP28, response regulat 1.0 1 1 50.2 18.8 182 340-541 105-286 (378)
8 3sf4_A G-protein-signaling mod 1.0 1 1 49.4 21.1 202 337-541 48-292 (406)
9 1qqe_A Vesicular transport pro 1.0 1 1 48.1 19.5 187 337-543 38-226 (292)
10 3ro2_A PINS homolog, G-protein 1.0 1 1 47.5 19.8 62 480-541 227-288 (338)
No 1
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=54.24 Aligned_cols=62 Identities=13% Similarity=0.163 Sum_probs=29.6
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999887279942899999999986159994114878999999999991899999999999
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~ 541 (1269)
..-|.-|.+.|+...|+.+|..++..+...+-......++..+|..+..+|+.+.|+.++.+
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99999999876899999999999999987698799999999999999981889999999999
No 2
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=53.24 Aligned_cols=202 Identities=13% Similarity=0.044 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCC------------HHH-------HHH
Q ss_conf 8987565998722799999999998642036510101010188999999823489------------357-------999
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQS------------RKE-------AEY 398 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~------------~~~-------~~~ 398 (1269)
....+|..++.+|+|+.|...|+.+.+-+.........+.+.-..|.++...+.. ..+ +..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999988479999999999999999865321006899999999999739744444310000104667899999999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHCCCC----
Q ss_conf 9999999986409884245899999999999832756999999998808-----6731568989999975410799----
Q 000815 399 CMENAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKP---- 469 (1269)
Q Consensus 399 ~le~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~-----e~~l~sAlllEqaA~c~l~~~~---- 469 (1269)
+++.|+..+.... ......++....+.++...|.+++|...+-++.. .+....+..+...|.+|.....
T Consensus 169 ~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 169 FYEENLSLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHCC--CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999998556--74778999999999999836899999999999999986278589999999999999884996999
Q ss_pred --------------CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf --------------988216888999999887279942899999999986159994114878999999999991899999
Q 000815 470 --------------PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIA 535 (1269)
Q Consensus 470 --------------p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~A 535 (1269)
+.....+..+..-|.-|.+.|+...|+.+|..++......+-......++..+|..+..+|+.+.|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999998857676489999999999999837699999999999999985578578999999999999986999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q 000815 536 VAHMLE 541 (1269)
Q Consensus 536 v~hll~ 541 (1269)
+.++.+
T Consensus 327 ~~~~~~ 332 (406)
T 3sf4_A 327 MHFAEK 332 (406)
T ss_dssp HHHHHH
T ss_pred HHHHHH
T ss_conf 999999
No 3
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=1.00 E-value=1 Score=53.11 Aligned_cols=187 Identities=13% Similarity=-0.010 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 78898756599872279999999999864203651010101018899999982348935799999999999864098842
Q 000815 336 ESQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQ 415 (1269)
Q Consensus 336 E~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~ 415 (1269)
-....++|..+...++|+.|...|+.+..-+...+.....|.+...+|.++..++. ..++..+++.|+..|...+. .
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~--~ 112 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGT--P 112 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTC--H
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCC--H
T ss_conf 99999999999986888999999999999999869979999999999999986799-99999999999999998599--8
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 45899999999999832756999999998808673156898999997541079998821688899999988727994289
Q 000815 416 QNATRCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHA 495 (1269)
Q Consensus 416 ~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~A 495 (1269)
..+.++....+.++.. |.+.+|...+-++... +-. ....+..+--+.-.|.-|.+.|+...|
T Consensus 113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~---------------~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A 174 (307)
T 2ifu_A 113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV---------------FEN--EERLRQAAELIGKASRLLVRQQKFDEA 174 (307)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH---------------HHH--TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH---------------HHH--CCCHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 9999999999999873-8999999999999999---------------984--798547999999999999981889999
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 999999998615999411487899999999999189999999999960
Q 000815 496 IRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLEKT 543 (1269)
Q Consensus 496 lrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~~~ 543 (1269)
+.+|..++.++...+........+..+|.....+|+.+.|+.++.+..
T Consensus 175 ~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 175 AASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 999999999999867854799999999999997398899999999973
No 4
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=52.14 Aligned_cols=182 Identities=18% Similarity=0.160 Sum_probs=119.3
Q ss_pred HHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 75659987227999999999986420365101010101889999998234893579999999999986409884245899
Q 000815 341 ILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNATR 420 (1269)
Q Consensus 341 rLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~R 420 (1269)
.+|.+++..|+|+.|...|+.+.+-+.........|.+.-..|.+.+.++. ...+..+++.|+..+.+.... .....+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~-~~~~~~ 185 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAY-NIRLLQ 185 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTT-HHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCCC-HHHHHH
T ss_conf 999999986699999999999999986099899999999999999998088-799999999999999867664-377998
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999999983275699999999880867315689899999754107999882168889999998872799428999999
Q 000815 421 CGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTYR 500 (1269)
Q Consensus 421 ~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~ 500 (1269)
+....+.++...|.+++|...+.++....+ ..+..+..+.-+..-|.-|.+.|+...|+.+|.
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----------------~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAE-----------------AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-----------------HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999999985489999999999999998-----------------749827899999999999987799999999999
Q ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99986159994114878999999999991899999999999
Q 000815 501 SAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 501 ~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~ 541 (1269)
.|+.+++..+-..-.-..++.+|..+..+|+.+.|..++.+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 289 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK 289 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 99998986165513999999999999887997999999999
No 5
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=1.00 E-value=1 Score=51.74 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 888999999887279942899999999986159994114878999999999991899999999999
Q 000815 476 GFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 476 Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~ 541 (1269)
+..+..-|.-|.+.|+...|+.+|..++......+-......++..+|+.+..+|+.+.|..++.+
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (338)
T 3ro2_A 263 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 328 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999999999999865899999999999999872389579999999999999986885899999999
No 6
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=51.44 Aligned_cols=202 Identities=9% Similarity=-0.025 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCC---------CHHH-------HHHHHH
Q ss_conf 898756599872279999999999864203651010101018899999982348---------9357-------999999
Q 000815 338 QIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQ---------SRKE-------AEYCME 401 (1269)
Q Consensus 338 q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~---------~~~~-------~~~~le 401 (1269)
....+|..++.+++|+.|...|+.+.+-+.........+.+.-..|.++..++. ...+ +..+++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998789999999999999999871044889999999999999837611133310011210699999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHCCCC-------
Q ss_conf 99999864098842458999999999998327569999999988086-----731568989999975410799-------
Q 000815 402 NAFTTYAKIGSSGQQNATRCGLWWVEMLKARHQYKDAATVYFRICGE-----EPLHSAVMLEQASYCYLLSKP------- 469 (1269)
Q Consensus 402 ~A~~~Y~~~~~~~~~~A~R~~ll~~e~l~~~~~~~eaa~~l~r~~~e-----~~l~sAlllEqaA~c~l~~~~------- 469 (1269)
.|+..+..... ......+....+.++...|.+++|...+-++... +....+..+...|.+|.....
T Consensus 208 ~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 208 ENLKLMRDLGD--RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 99999997388--7999999999999999858829999999999999985199678999999999999987689999999
Q ss_pred -----------CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf -----------988216888999999887279942899999999986159994114878999999999991899999999
Q 000815 470 -----------PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAH 538 (1269)
Q Consensus 470 -----------p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~h 538 (1269)
+.....+..+..-|..|.+.|+...|+.+|..++......+-......++..+|+.+..+|+.+.|+.+
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999876987999999999999999818899999999999999998798588999999999999980569999999
Q ss_pred HHH
Q ss_conf 999
Q 000815 539 MLE 541 (1269)
Q Consensus 539 ll~ 541 (1269)
+.+
T Consensus 366 ~~~ 368 (411)
T 4a1s_A 366 AEQ 368 (411)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 7
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=50.19 Aligned_cols=182 Identities=14% Similarity=0.119 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 87565998722799999999998642036510101010188999999823489357999999999998640988424589
Q 000815 340 RILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQNAT 419 (1269)
Q Consensus 340 RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~~A~ 419 (1269)
-.+|.+++..|+|+.|...|+.+.+-+.........|.+.-..|.+.+.++. ...+..+++.|+..+.+.... .....
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~-~~~~~ 182 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLY-SIRTI 182 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTC-HHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHCCCC-HHHHH
T ss_conf 9999999997789999999999999986588918999999999999998199-099999999999999867883-06699
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 99999999998327569999999988086731568989999975410799988216888999999887279942899999
Q 000815 420 RCGLWWVEMLKARHQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHAIRTY 499 (1269)
Q Consensus 420 R~~ll~~e~l~~~~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~AlrCy 499 (1269)
.|....+.++...|.+++|...+.++.... - ..+..+..+.-+..-|.-|...|+...|+.+|
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~---------------~--~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELA---------------M--DIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------H--HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---------------H--HCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_conf 999999999998578999999999999999---------------9--86987789999998999998789999999999
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 999986159994114878999999999991899999999999
Q 000815 500 RSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 500 ~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~ 541 (1269)
..|+..++..+-+.. ...++.+|+.++.+|+.+.|+.++.+
T Consensus 246 ~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 246 QKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHH-HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_conf 999998876088569-99999999999988998999999999
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=49.38 Aligned_cols=202 Identities=15% Similarity=0.095 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 88987565998722799999999998642036510101010188999999823489357999999999998640988424
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
.....||..++..++|+.|...|+.+..-+.........+.+.-..|.+++..+. ..++..+++.|+..+..... ..
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~--~~ 124 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN-FDEAIVCCQRHLDISRELND--KV 124 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTC--HH
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 9999999999980689999999999999998626667899999999999988479-99999999999999986532--10
Q ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHCCCC--
Q ss_conf 589999999999983275--------------------6999999998808-----6731568989999975410799--
Q 000815 417 NATRCGLWWVEMLKARHQ--------------------YKDAATVYFRICG-----EEPLHSAVMLEQASYCYLLSKP-- 469 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~~~--------------------~~eaa~~l~r~~~-----e~~l~sAlllEqaA~c~l~~~~-- 469 (1269)
...++....+.++...|. +.+|...+-+... .+....+..+-..|.+|.....
T Consensus 125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 204 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHH
T ss_conf 06899999999999739744444310000104667899999999999999999855674778999999999999836899
Q ss_pred ----------------CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHH
Q ss_conf ----------------9882168889999998872799428999999999861599941148789999999999918999
Q 000815 470 ----------------PMLHKYGFHLVLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHD 533 (1269)
Q Consensus 470 ----------------p~~RK~Af~~vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~ 533 (1269)
+...-.+..+..-|.-|.+.|+...|+.+|..++..+...+-......++..+|..+..+|+.+
T Consensus 205 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 284 (406)
T 3sf4_A 205 DAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYE 284 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999998627858999999999999988499699999999999998857676489999999999999837699
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q 000815 534 IAVAHMLE 541 (1269)
Q Consensus 534 ~Av~hll~ 541 (1269)
.|+.++..
T Consensus 285 ~A~~~~~~ 292 (406)
T 3sf4_A 285 KAIDYHLK 292 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
T ss_conf 99999999
No 9
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=48.10 Aligned_cols=187 Identities=12% Similarity=-0.002 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf 88987565998722799999999998642036510101010188999999823489357999999999998640988424
Q 000815 337 SQIRILGDYAFMLRDYELALSNYRLISTDYKLDKAWKRYAGVQEMMGLTYFMLDQSRKEAEYCMENAFTTYAKIGSSGQQ 416 (1269)
Q Consensus 337 ~q~RrLADlaFml~DY~~A~s~Y~~l~~Df~~Dkaw~~~A~a~EM~ais~ll~~~~~~~~~~~le~A~~~Y~~~~~~~~~ 416 (1269)
....+.|..+...|+|+.|...|+.+..-+.........|.+..-+|.++.-++ ...++..+++.|+..|...+. ..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~Al~l~~~~g~--~~ 114 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG-NSVNAVDSLENAIQIFTHRGQ--FR 114 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTC--HH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCC--HH
T ss_conf 999999999998689999999999999999981999999999999999998779-999999999999999998698--89
Q ss_pred HHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 5899999999999832-756999999998808673156898999997541079998821688899999988727994289
Q 000815 417 NATRCGLWWVEMLKAR-HQYKDAATVYFRICGEEPLHSAVMLEQASYCYLLSKPPMLHKYGFHLVLSGDRYKKCDQINHA 495 (1269)
Q Consensus 417 ~A~R~~ll~~e~l~~~-~~~~eaa~~l~r~~~e~~l~sAlllEqaA~c~l~~~~p~~RK~Af~~vLAg~ry~kagq~~~A 495 (1269)
.+..+..-.+.++... |.+++|...+-++..-.+ . .+.....+-.+...|.-|.+.|+...|
T Consensus 115 ~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~---------------~--~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYA---------------Q--DQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH---------------H--TTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH---------------H--CCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999999999862479999999999999988---------------4--898678999999999999980889999
Q ss_pred HHHHHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHHCCHHHHHHHHHHHC
Q ss_conf 99999999861599941-1487899999999999189999999999960
Q 000815 496 IRTYRSAVSVYKGSTWS-HIKDHVHFHIGQWYAVLGMHDIAVAHMLEKT 543 (1269)
Q Consensus 496 lrCy~~a~~vY~~~~W~-~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~~~ 543 (1269)
+.+|..++......+.. ...-..++.+|.....+|+.+.|+.++-+..
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998736974517999999999999987299999999999998
No 10
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=1.00 E-value=1 Score=47.55 Aligned_cols=62 Identities=15% Similarity=0.214 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99999887279942899999999986159994114878999999999991899999999999
Q 000815 480 VLSGDRYKKCDQINHAIRTYRSAVSVYKGSTWSHIKDHVHFHIGQWYAVLGMHDIAVAHMLE 541 (1269)
Q Consensus 480 vLAg~ry~kagq~~~AlrCy~~a~~vY~~~~W~~i~dhi~~~Lgrqa~~Lg~~~~Av~hll~ 541 (1269)
..-|.-|.+.|+...|..+|..++..+...+-......++..+|+.+..+|+.+.|+.++..
T Consensus 227 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (338)
T 3ro2_A 227 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLK 288 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf 99999999818899999999999999985035658999999999999986589999999999
Done!