Your job contains 1 sequence.
>000818
MAEMRGRLQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINN
NNKQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEG
SSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRK
SKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPL
LLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASL
NDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQ
TMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDL
EALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVV
QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG
KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFL
EEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDAL
DLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAET
VKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEK
QLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG
PQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNI
VGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGD
IKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIE
REGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNS
EISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYR
QNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSF
MGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGKVKGTPVRSRKGGHFSLFVDCTKAK
KSESRLRR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000818
(1268 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065299 - symbol:STI "STICHEL" species:3702 "A... 2623 0. 3
TAIR|locus:2012497 - symbol:AT1G14460 species:3702 "Arabi... 2268 3.3e-282 4
TAIR|locus:2121934 - symbol:AT4G24790 species:3702 "Arabi... 845 5.4e-101 4
TAIR|locus:2172013 - symbol:AT5G45720 species:3702 "Arabi... 704 5.6e-80 4
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 462 1.5e-45 2
TIGR_CMR|DET_0585 - symbol:DET_0585 "DNA polymerase III, ... 486 3.1e-45 1
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 468 2.0e-44 2
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 471 1.2e-43 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 467 3.3e-43 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 466 4.3e-43 1
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 455 6.5e-42 1
UNIPROTKB|Q2GDS0 - symbol:NSE_0492 "Putative DNA polymera... 431 1.3e-41 2
TIGR_CMR|NSE_0492 - symbol:NSE_0492 "putative DNA polymer... 431 1.3e-41 2
UNIPROTKB|O83970 - symbol:TP_1005 "DNA polymerase III, su... 452 1.4e-41 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 444 9.7e-41 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 410 4.3e-37 1
TIGR_CMR|CBU_0659 - symbol:CBU_0659 "DNA polymerase III, ... 409 5.5e-37 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 425 6.2e-36 2
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 425 6.2e-36 2
TIGR_CMR|SO_2013 - symbol:SO_2013 "DNA polymerase III, ga... 420 1.6e-35 1
TIGR_CMR|APH_1348 - symbol:APH_1348 "DNA polymerase III, ... 393 2.8e-35 1
UNIPROTKB|Q0C591 - symbol:dnaX "DNA polymerase III, subun... 400 2.2e-34 2
UNIPROTKB|P06710 - symbol:dnaX species:83333 "Escherichia... 401 3.9e-34 1
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 399 1.1e-33 1
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 399 1.1e-33 1
UNIPROTKB|P63975 - symbol:dnaX "DNA polymerase III subuni... 366 1.8e-30 1
UNIPROTKB|E7DN81 - symbol:E7DN81 "DnaX DNA polymerase III... 223 6.8e-25 2
UNIPROTKB|F1NIY0 - symbol:RFC4 "Uncharacterized protein" ... 215 2.0e-14 1
UNIPROTKB|F1NEW1 - symbol:RFC4 "Uncharacterized protein" ... 215 2.1e-14 1
TIGR_CMR|BA_0028 - symbol:BA_0028 "DNA polymerase III, de... 204 2.8e-13 2
UNIPROTKB|P35249 - symbol:RFC4 "Replication factor C subu... 202 6.4e-13 1
UNIPROTKB|E2R2M6 - symbol:RFC4 "Uncharacterized protein" ... 201 8.2e-13 1
TIGR_CMR|GSU_2230 - symbol:GSU_2230 "DNA polymerase III, ... 196 1.8e-12 1
TIGR_CMR|DET_0535 - symbol:DET_0535 "DNA polymerase III, ... 195 3.0e-12 1
POMBASE|SPAC27E2.10c - symbol:rfc3 "DNA replication facto... 148 3.2e-12 2
UNIPROTKB|F1SFI3 - symbol:RFC4 "Uncharacterized protein" ... 193 6.8e-12 1
UNIPROTKB|C9JZI1 - symbol:RFC4 "Replication factor C subu... 189 1.4e-11 1
MGI|MGI:2146571 - symbol:Rfc4 "replication factor C (acti... 190 1.4e-11 1
RGD|1310142 - symbol:Rfc4 "replication factor C (activato... 190 1.4e-11 1
ZFIN|ZDB-GENE-040907-1 - symbol:rfc5 "replication factor ... 138 2.4e-11 2
ZFIN|ZDB-GENE-040824-3 - symbol:rfc4 "replication factor ... 186 3.8e-11 1
SGD|S000003829 - symbol:RFC2 "Subunit of heteropentameric... 184 6.1e-11 1
GENEDB_PFALCIPARUM|PFB0840w - symbol:PFB0840w "replicatio... 183 6.2e-11 1
UNIPROTKB|O96260 - symbol:PFB0840w "Replication factor C,... 183 6.2e-11 1
POMBASE|SPAC23D3.02 - symbol:rfc2 "DNA replication factor... 183 6.9e-11 1
ZFIN|ZDB-GENE-050306-29 - symbol:rfc2 "replication factor... 150 9.0e-11 2
WB|WBGene00018409 - symbol:F44B9.8 species:6239 "Caenorha... 183 9.0e-11 1
UNIPROTKB|Q29RS9 - symbol:RFC4 "Uncharacterized protein" ... 181 1.1e-10 1
DICTYBASE|DDB_G0286027 - symbol:rfc4 "replication factor ... 181 1.3e-10 1
GENEDB_PFALCIPARUM|PFL2005w - symbol:PFL2005w "replicatio... 134 1.4e-10 2
UNIPROTKB|Q8I512 - symbol:PFL2005w "Replication factor C ... 134 1.4e-10 2
ASPGD|ASPL0000039105 - symbol:AN2969 species:162425 "Emer... 181 1.8e-10 1
FB|FBgn0260985 - symbol:RfC4 "Replication factor C subuni... 139 2.4e-10 2
FB|FBgn0030871 - symbol:CG8142 species:7227 "Drosophila m... 177 3.8e-10 1
CGD|CAL0003213 - symbol:RCF3 species:5476 "Candida albica... 176 5.2e-10 1
DICTYBASE|DDB_G0282235 - symbol:rfc5 "replication factor ... 127 6.0e-10 2
UNIPROTKB|Q32PI3 - symbol:RFC5 "Uncharacterized protein" ... 128 6.5e-10 2
UNIPROTKB|F1RKG3 - symbol:RFC5 "Uncharacterized protein" ... 128 1.0e-09 2
SGD|S000005234 - symbol:RFC3 "Subunit of heteropentameric... 113 1.1e-09 2
UNIPROTKB|P53033 - symbol:RFC2 "Replication factor C subu... 142 1.4e-09 2
UNIPROTKB|E2QSU1 - symbol:RFC2 "Uncharacterized protein" ... 134 1.5e-09 2
MGI|MGI:1919401 - symbol:Rfc5 "replication factor C (acti... 135 1.6e-09 2
RGD|1309280 - symbol:Rfc5 "replication factor C (activato... 134 2.0e-09 2
UNIPROTKB|J9NUF8 - symbol:RFC5 "Uncharacterized protein" ... 128 2.1e-09 2
DICTYBASE|DDB_G0291868 - symbol:rfc2 "replication factor ... 128 2.2e-09 2
UNIPROTKB|F6ULR2 - symbol:RFC2 "Uncharacterized protein" ... 134 2.7e-09 2
UNIPROTKB|E2RCF4 - symbol:RFC5 "Uncharacterized protein" ... 128 2.9e-09 2
UNIPROTKB|Q05B83 - symbol:RFC2 "Replication factor C subu... 134 3.0e-09 2
FB|FBgn0032244 - symbol:RfC3 "Replication factor C subuni... 112 4.5e-09 2
RGD|621198 - symbol:Rfc2 "replication factor C (activator... 132 4.8e-09 2
UNIPROTKB|P35250 - symbol:RFC2 "Replication factor C subu... 132 5.1e-09 2
UNIPROTKB|O06363 - symbol:Rv3644c "Possible DNA polymeras... 168 5.2e-09 1
UNIPROTKB|P40937 - symbol:RFC5 "Replication factor C subu... 128 5.9e-09 2
MGI|MGI:1341868 - symbol:Rfc2 "replication factor C (acti... 131 7.8e-09 2
ASPGD|ASPL0000017750 - symbol:AN8064 species:162425 "Emer... 163 1.8e-08 1
TAIR|locus:2015233 - symbol:RFC2 "replication factor C 2"... 137 2.4e-08 2
CGD|CAL0002015 - symbol:RFC2 species:5476 "Candida albica... 161 2.4e-08 1
WB|WBGene00004340 - symbol:rfc-4 species:6239 "Caenorhabd... 157 5.5e-08 1
UNIPROTKB|P53016 - symbol:rfc-4 "Replication factor C sub... 157 5.5e-08 1
UNIPROTKB|Q9KQI3 - symbol:VC_2015 "DNA polymerase III, de... 155 1.4e-07 2
TIGR_CMR|VC_2015 - symbol:VC_2015 "DNA polymerase III, de... 155 1.4e-07 2
SGD|S000005454 - symbol:RFC4 "Subunit of heteropentameric... 141 1.6e-07 2
CGD|CAL0000922 - symbol:RFC4 species:5476 "Candida albica... 137 2.2e-07 2
POMBASE|SPAC1687.03c - symbol:rfc4 "DNA replication facto... 127 2.7e-07 2
GENEDB_PFALCIPARUM|PF14_0601 - symbol:PF14_0601 "replicat... 148 5.9e-07 1
UNIPROTKB|Q8IKK4 - symbol:PF14_0601 "Replication factor C... 148 5.9e-07 1
WB|WBGene00004338 - symbol:rfc-2 species:6239 "Caenorhabd... 127 8.0e-07 2
TAIR|locus:2204710 - symbol:RFC3 "replication factor C su... 118 1.1e-06 2
UNIPROTKB|C9J8M3 - symbol:RFC4 "Replication factor C subu... 135 3.1e-06 1
UNIPROTKB|I3LHX6 - symbol:RFC2 "Uncharacterized protein" ... 135 4.1e-06 2
TIGR_CMR|CBU_0500 - symbol:CBU_0500 "DNA polymerase III, ... 138 6.3e-06 1
UNIPROTKB|P28631 - symbol:holB "DNA polymerase III, delta... 137 9.0e-06 1
UNIPROTKB|F8W9B4 - symbol:RFC5 "Replication factor C subu... 128 4.5e-05 1
TIGR_CMR|SO_2612 - symbol:SO_2612 "DNA polymerase III, de... 129 6.2e-05 1
TIGR_CMR|SO_2308 - symbol:SO_2308 "ATPase, AAA family" sp... 104 0.00032 2
RGD|1593197 - symbol:LOC367042 "similar to Activator 1 37... 123 0.00034 1
TAIR|locus:2180315 - symbol:EMB2775 "EMBRYO DEFECTIVE 277... 123 0.00036 1
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 2623 (928.4 bits), Expect = 0., Sum P(3) = 0.
Identities = 554/935 (59%), Positives = 662/935 (70%)
Query: 82 KEKRVFLCNWKNQKSSSETSAVARNXXXXXXXXXXXXXXXXXXXXXXXXXXXXARNGGDS 141
KEK+VFL NWK QKSSSE S +A+N ARNGGDS
Sbjct: 77 KEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEDASSWTQASVNDDDDVSD-ARNGGDS 135
Query: 142 KSDTYLGENRASSI-FRCRDANLVSVATPXXXXXXXXXXXXXXHKTLS----DSLTRYQQ 196
Y E +++S+ FRCRD NL S K +S D L++YQ
Sbjct: 136 ----YRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSKKKISSSRLDCLSKYQP 191
Query: 197 KQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSGASPLLLKLKHKNWSHSSSK 255
+ I+ARN A G SDDTE+ NSED RK +GASPLLLKLK KNWS SSS+
Sbjct: 192 RDDIVARNCNA---G-------SDDTEEELSNSEDLRKVTGASPLLLKLKQKNWSRSSSR 241
Query: 256 LLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATTASXXXXXXXXXXXXXX 313
LL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD TT S
Sbjct: 242 LLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTTTSVNDGDDELDDNLDL 301
Query: 314 PGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGXXXXXXXX 373
PGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSSILCGSQ++Y
Sbjct: 302 PGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCGSQSVYRRHNRHSSGG 361
Query: 374 XXXX-MASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWS 432
+A RSAQGVLPLL+ GDGR GSS+GTG SDDELSTN+GELDLEA SRLDGRRWS
Sbjct: 362 YSKQKIACRSAQGVLPLLSYGGDGRGGSSLGTGLSDDELSTNYGELDLEAQSRLDGRRWS 421
Query: 433 SSCRSQDGLE-IXXXXXXXXXXXXXXIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGR 491
+S RSQDGLE + IRS SQKY+P+FF+ELIGQ+IVVQSL+N + R R
Sbjct: 422 TSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELIGQSIVVQSLMNAVKRSR 481
Query: 492 IAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT 551
IAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC+ECNDF+SGKS++F E+DG
Sbjct: 482 IAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDFMSGKSKDFWELDGA 541
Query: 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIF 611
NKKG D+VRY+LK+L LP S +KVFVIDECHLLPSKTWL+FLKFLE P Q+VVFIF
Sbjct: 542 NKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIF 601
Query: 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSL 671
ITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++ENL+V+ ALDLIA+NADGSL
Sbjct: 602 ITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDLHALDLIAMNADGSL 661
Query: 672 RDAETMLDQLSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSG 731
RDAETML+QLSLLGKRIT++LVN A+SSDTAETVKRAREL+D G
Sbjct: 662 RDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDTAETVKRARELLDLG 721
Query: 732 VDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAELERLKHALKLLSEAEKQ 781
DP+VLMSQLASLIMDIIAGTY + GR+LTEA++E LKHALKLLSEAEKQ
Sbjct: 722 ADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLTEADMEGLKHALKLLSEAEKQ 781
Query: 782 LRLSSERCTWFTATLLQLGSMHSPDLXXXXXXXXXXXXXXEEDPSSTSREAVVYKRMSGP 841
LR+S++R TWFTATLLQLGSM SP ++DP+S SRE + YK+ G
Sbjct: 782 LRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDPASVSREVMAYKQRIGG 841
Query: 842 QYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDA-GALAVSQNGNI 900
+ ++A SPAS+ + NGN H + SR+ +N Y S S++ ++ G++A +N +I
Sbjct: 842 LHFSKSA-SPASVIKR-NGNHSHEAKPFSRVIDNNCYKSSSSSQMIESEGSIASHEN-SI 898
Query: 901 VGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGD 960
++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+SISEVE +L+AY+AFG+ D
Sbjct: 899 ASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISEVEGILVAYIAFGEND 958
Query: 961 IKSRAERFLSSITNSIETVLRRNVEVRIILLPDGE 995
IK RAERFLSSITNSIE VLRR+VEVRIILLP+ E
Sbjct: 959 IKLRAERFLSSITNSIEMVLRRSVEVRIILLPETE 993
Score = 495 (179.3 bits), Expect = 0., Sum P(3) = 0.
Identities = 101/207 (48%), Positives = 140/207 (67%)
Query: 1069 SNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPE 1128
+N + L A+ + E+ S+ R ++PMQRIESIIREQRLETAWLQ +K PGS+ ++PE
Sbjct: 1014 NNIAGLNAETDVEVGSSVESRSKLPMQRIESIIREQRLETAWLQTADKDTPGSIIRVKPE 1073
Query: 1129 KNQVLPQEDIYRQNHMEXXXXXXX-XXQQWEDELNQELKILKLNEDRVLKKDENGKKGEN 1187
+NQ+LPQED YRQ ++ QW DELN E+K+LK+ ++ L+++ G +G++
Sbjct: 1074 RNQILPQEDTYRQTNVASAISSSGLTTHQWVDELNNEVKLLKIGDNGELQENLTGTRGQH 1133
Query: 1188 YPILPSLLHDSSFMGNFSKENQG-YESGSQAGGCSGLFCWNNTKPHKKGK---VKGTPVR 1243
P+ PSLLHD++F GN +K+N G YESGS GC+ LFCWN K ++ K VKGTPVR
Sbjct: 1134 CPLSPSLLHDTNF-GN-NKDNLGGYESGSGRVGCNILFCWNTKKTQRRSKSKQVKGTPVR 1191
Query: 1244 SRKG--GHFSLFVDCTKAKKSESRLRR 1268
SR+ FSLF C K +K+E +RR
Sbjct: 1192 SRRNRKSRFSLFNGCAKPRKAEGNIRR 1218
Score = 91 (37.1 bits), Expect = 0., Sum P(3) = 0.
Identities = 20/24 (83%), Positives = 21/24 (87%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTT 29
+L LKKELTQIRKA R LRDPGTT
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTT 34
Score = 38 (18.4 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 257 LKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSW 293
+ G R D S + L+ V R+P T SW
Sbjct: 1 MSGSRVSDLSKLHLKKELTQIRKAGRVLRDPGTTSSW 37
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 2268 (803.4 bits), Expect = 3.3e-282, Sum P(4) = 3.3e-282
Identities = 481/805 (59%), Positives = 575/805 (71%)
Query: 205 SAALGLGRDESVEQSDDTEDYCNSEDF-RKYSGASPLLLKLKHKNWSHSSSKLLKG-GRK 262
++ L + RDES D+TED+ NSE+F K S SPLLLKLK KNWS SSSK L+G ++
Sbjct: 180 ASGLSVVRDES----DETEDFSNSENFPTKVS--SPLLLKLKRKNWSRSSSKFLRGTSKR 233
Query: 263 EDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATTASXXXXXXXXXXXXXXPGRQGCGI 321
EDSS++ STPALSTSSYN Y RNPST+GSW+ GRQGCGI
Sbjct: 234 EDSSHTCNSTPALSTSSYNMYGIRNPSTVGSWE------DGDDELDDDNLDFKGRQGCGI 287
Query: 322 PCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGXXXXXXXXXXXXMASR 381
P YW+KR KHRG C SCCSPS SDTLRRKGSSILCGSQ++Y +A R
Sbjct: 288 PFYWTKRNLKHRGGCRSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHSSGRFNKQKLALR 347
Query: 382 SAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGL 441
SA+GVLPLL GD R GSSIG G SDD+LST+FGE+DLEA SRLDGRRWSS C+SQDG
Sbjct: 348 SAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGRRWSSCCKSQDG- 406
Query: 442 EIXXXXXXXXXXXXXXIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGP 501
I+SLSQKYKP+FFDELIGQ+IVVQSL+N + +GR+A VYLFQGP
Sbjct: 407 --EREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGP 464
Query: 502 RGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560
RGTGKTSTA+I SAALNC V T++ KPCGYC+EC+D++ GKSR+ +E+D K G ++VR
Sbjct: 465 RGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVR 524
Query: 561 YILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVP 620
Y+LK L P +S R+KVFVIDECHLLPS+TWL+ LKFLE P Q+ VF+ ITTD+DNVP
Sbjct: 525 YLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVP 584
Query: 621 RSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
R+IQSRCQKY+FNK++DGDIV RLRKI+++ENL+VE ALDLIALNADGSLRDAETML+Q
Sbjct: 585 RTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQ 644
Query: 681 LSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQ 740
LSL+GKRIT LVN A+SSDTAETVK+AREL+D G DP+++MSQ
Sbjct: 645 LSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLGADPILMMSQ 704
Query: 741 LASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCT 790
LASLIMDIIAG Y + R+LTEA+LERLKHALKLLSEAEKQLR+S++R T
Sbjct: 705 LASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQLRVSTDRST 764
Query: 791 WFTATLLQLGSMHSPDLXXXXXXXXXXXXXXEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
WF ATLLQLGSM SP EE S SRE + YK+ SG Q N S
Sbjct: 765 WFIATLLQLGSMPSPGTTHTGSSRRQSSRATEE---SISREVIAYKQRSGLQC--SNTAS 819
Query: 851 PASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRN 910
P S+R+ +GN + EV S S L+ ++A S + +TCRN
Sbjct: 820 PTSIRK--SGNL--VREV--------KLSSSSSEVLESDTSMA-SHDDTTASTMTLTCRN 866
Query: 911 SEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLS 970
SEKL +IW +C++RCHSKTLKQLL HGKLLSISEVE +L+AY+AFG+G+IK+RAERF+S
Sbjct: 867 SEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKARAERFVS 926
Query: 971 SITNSIETVLRRNVEVRIILLPDGE 995
SITNSIE VLRRNVEVRIILL + E
Sbjct: 927 SITNSIEMVLRRNVEVRIILLSETE 951
Score = 219 (82.2 bits), Expect = 3.3e-282, Sum P(4) = 3.3e-282
Identities = 45/99 (45%), Positives = 66/99 (66%)
Query: 1165 LKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF 1224
+K+LK+ E +++++GK+ E+ P+ PSLLH+S+F N K+N GYES S G CS LF
Sbjct: 1020 VKVLKICEMGEFQENQSGKRMEHCPVSPSLLHNSNFTNN--KDNLGYESESGRGVCSLLF 1077
Query: 1225 CWNNTKPHKKGKVKGTPVRSRKGGH--FSLFVDCTKAKK 1261
CWN K ++ K+KGT +RSR+ FSLF C + +K
Sbjct: 1078 CWNTQKSPRRTKIKGTSMRSRRSRERRFSLFSACARPRK 1116
Score = 165 (63.1 bits), Expect = 3.3e-282, Sum P(4) = 3.3e-282
Identities = 33/47 (70%), Positives = 39/47 (82%)
Query: 1091 EIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQED 1137
EIPM+RIE+II+EQRLET WLQ T PGS G L+PE+NQ+LPQED
Sbjct: 974 EIPMKRIEAIIQEQRLETEWLQKT----PGSQGRLKPERNQILPQED 1016
Score = 115 (45.5 bits), Expect = 3.3e-282, Sum P(4) = 3.3e-282
Identities = 36/95 (37%), Positives = 43/95 (45%)
Query: 7 RLQLKKELTQIRKAAR--LRDPGTTXXXXXXXXXXXXXXXXXXXXXXXXXXWKINNNNKQ 64
+L LKKELT IRK A LRDPGTT +I +NN Q
Sbjct: 11 KLHLKKELTHIRKVASKGLRDPGTTSSWKSPLTSSRFVVEPPASNNV-----EILSNN-Q 64
Query: 65 LVDEDXXXXXXXXXXXXKEKRVFLCNWKNQKSSSE 99
L + KEK+VFL NWK Q++SSE
Sbjct: 65 LDSQFPSSRVFGNNGKEKEKKVFLYNWKTQRTSSE 99
Score = 39 (18.8 bits), Expect = 3.7e-19, Sum P(3) = 3.7e-19
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 1095 QRIESIIREQRLETAWLQAT 1114
QR S E ET+W+QA+
Sbjct: 94 QRTSSEKTEGEDETSWIQAS 113
Score = 37 (18.1 bits), Expect = 3.4e-31, Sum P(4) = 3.4e-31
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 1051 SRGSFNELEGKFKGEDDHSNCS 1072
SR S L G K ED C+
Sbjct: 220 SRSSSKFLRGTSKREDSSHTCN 241
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 845 (302.5 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 182/356 (51%), Positives = 235/356 (66%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSLSQK++P FDEL+GQ +VV+ L++TI RGRI VYLF GPRGTGKTST+KIF+AALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C++ ++PCG C EC + SG+ R+ ME D +R ++K SA LP S RF
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIK--SASLPPVSSRF 356
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDEC LL +TW L L+ Q VFI +T++++ +PR++ SR QKY F+K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXX 697
DI +L KI EE ++ + A+D IA +DGSLRDAE MLDQLSLLGKRIT+SL
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 698 XXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
AMSSDT+ TV RARELM S +DPM L+SQLA++IMDIIAG
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 758 -----RSLT----EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
R LT E E+++L++ALK+LS+AEK LR S + TW T LLQL + S
Sbjct: 537 SATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDS 592
Score = 100 (40.3 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 27/84 (32%), Positives = 47/84 (55%)
Query: 909 RN-SEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAER 967
RN +E + +W + C S +LK+ L G+L S++ + V IA + F +RAE+
Sbjct: 633 RNCNETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEK 692
Query: 968 FLSSITNSIETVLRRNVEVRIILL 991
I +S ++VL NVE+++ L+
Sbjct: 693 SWKLIADSFQSVLGCNVEIQMNLV 716
Score = 59 (25.8 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 317 QGCGIPCYWSKRTPKHRG 334
+GCGI WS RTP++RG
Sbjct: 190 RGCGITYCWS-RTPRYRG 206
Score = 41 (19.5 bits), Expect = 5.4e-101, Sum P(4) = 5.4e-101
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 10 LKKELTQIRKAARLRDPGTT 29
+ + L +R+ LRDP TT
Sbjct: 13 ITRTLVALRRVRSLRDPCTT 32
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 704 (252.9 bits), Expect = 5.6e-80, Sum P(4) = 5.6e-80
Identities = 146/351 (41%), Positives = 219/351 (62%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+S +QKY P F +L+GQN+VVQ+L N I++ R+ +Y+F GP GTGKTS A++F+ ALN
Sbjct: 343 QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALN 402
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +T+Q+KPCG C C + GK+R E+ K D + K + +
Sbjct: 403 CHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPV--KSFDFENLLDK---TNIRQQQKQQL 457
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V + D+C + + W K ++ P+RVVF+ + + +D +P I SRCQK+ F K+KD
Sbjct: 458 VLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDV 517
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXX 698
DI+ L+ I+++E ++++ DAL L+A +DGSLRDAE L+QLSLLG RI+ LV
Sbjct: 518 DIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRISVPLVQEMVG 577
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
A+S+DT TVK R +M++G++P+ LMSQLA++I DI+AG+Y
Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDILAGSYDFTKD 637
Query: 758 ---------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ L++ ++E+LK ALK LSE+EKQLR+S+++ TW TA LLQL
Sbjct: 638 QCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQL 688
Score = 97 (39.2 bits), Expect = 5.6e-80, Sum P(4) = 5.6e-80
Identities = 32/101 (31%), Positives = 47/101 (46%)
Query: 907 TCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAE 966
+C+N + +IW IE L++ L GK+ SIS + + + F KS AE
Sbjct: 734 SCKNRPSVEDIWLAVIENVRVNGLREFLYKEGKIFSIS-IGSAPMVQLMFNSPIAKSTAE 792
Query: 967 RFLSSITNSIETVLRRNV--EVRIILLPD-GEASIHHGISN 1004
F I + E VL V E+R D G +S+ G+SN
Sbjct: 793 NFEEHILKAFEAVLGSPVTLEMRTESKKDLGFSSLQ-GLSN 832
Score = 59 (25.8 bits), Expect = 5.6e-80, Sum P(4) = 5.6e-80
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 319 CGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSS 354
CGIP WS+ HRG + G S +SD+ RKG +
Sbjct: 240 CGIPFNWSRI--HHRGKTFLDIAGRSLSCGISDSKGRKGEA 278
Score = 47 (21.6 bits), Expect = 5.6e-80, Sum P(4) = 5.6e-80
Identities = 24/98 (24%), Positives = 48/98 (48%)
Query: 197 KQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRK-----YSGASPLLLKLKHKNWSH 251
+ +++ + S +L RD S + ED+ +S + R+ SG+SP++ +
Sbjct: 55 RDLVVLQRSRSL---RDPSASPNLK-EDHQDSREGRRRSGLRLSGSSPIV-SFGTSKVTP 109
Query: 252 SSSKLLKGGRK----EDSSYSYSTPALSTSSYNRYVNR 285
S K + RK E+ + YS P++ + S +R +N+
Sbjct: 110 SDEKFDRSSRKSYRVEEVNEVYSVPSVKSVSKDR-INK 146
Score = 37 (18.1 bits), Expect = 6.3e-79, Sum P(4) = 6.3e-79
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 7 RLQLKKELTQIRKAARLRDPGTT 29
R L ++L ++++ LRDP +
Sbjct: 50 RSLLMRDLVVLQRSRSLRDPSAS 72
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 462 (167.7 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 108/330 (32%), Positives = 176/330 (53%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L GQ V ++L N I GRIA +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C C + +G S + +E+DG + G+D +R + +++ LPS R+K+F
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKY-LPSRL-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ +P +I SRCQ++ F +I +
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXXXX 699
VARLR I E +++ ++L ++A DGS+RD+ ++LDQ L+ G+ + V
Sbjct: 184 VARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGV 243
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTIGG 757
+ DT + + + G + +L + I+ G
Sbjct: 244 VDRRLLLEASAAVLGRDTRSVLGVVARVDEFGYNMRQFCGELIDHFRNLTIMRAVGDAGD 303
Query: 758 R-SLTEAELERLKHALK--LLSEAEKQLRL 784
L+EAEL+ ++ LL + ++ + +
Sbjct: 304 LLDLSEAELQSVREQASSALLEDLQRHMTI 333
Score = 55 (24.4 bits), Expect = 1.5e-45, Sum P(2) = 1.5e-45
Identities = 22/76 (28%), Positives = 35/76 (46%)
Query: 955 AFGD-GDIKSRAERFLSSITNSIETVLRRNVE--VRIILLPDGEASIHHGISN-ELPKGL 1010
A GD GD+ +E L S+ + L +++ + I+L DGE + H G L L
Sbjct: 297 AVGDAGDLLDLSEAELQSVREQASSALLEDLQRHMTILLRADGELA-HSGYPRLVLEMAL 355
Query: 1011 KKTETTAAIEREGKAL 1026
+ T A + G+ L
Sbjct: 356 VRMATLAPLVPVGELL 371
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 486 (176.1 bits), Expect = 3.1e-45, P = 3.1e-45
Identities = 132/433 (30%), Positives = 209/433 (48%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 66
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK P+ + +KV+
Sbjct: 67 NQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRE-LKEKVQYAPALA-NYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 125 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDM 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNXXXXX 699
+L KIS E +N+EP+AL LIA +A GS RD E +L Q++ G I+ V
Sbjct: 185 SRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGI 244
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGTYTIGGR 758
+ D ++ ++ G+D +L + I + + G
Sbjct: 245 SGDERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSL 304
Query: 759 SLTEAELERLKHA-----LKLLSEAEK---QLRLSSERCTWFTATLLQLGSMHSPDLXXX 810
LT E + L+ L+ +++A K QL SS+ + + L + + +PD
Sbjct: 305 ELTADEKKALQKVSAITNLEGITKAIKAFSQLDFSSDTASSLSFELALVDASLNPDTAPA 364
Query: 811 XXXXXXXXXXXEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASL-REPVNGNSRHLGEVL 869
+ + + S E + + Q +NA PA+ R ++ L
Sbjct: 365 TIPPQAKLPAPKTEKPAVSNEPPQKEAKAEIQDKTKNASEPAAASRTGAKESAPKLTRTA 424
Query: 870 SRIDGHNSYSKPS 882
++ Y+ P+
Sbjct: 425 IPVEEKPKYTAPA 437
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 468 (169.8 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 102/290 (35%), Positives = 160/290 (55%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G++ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID--SVRYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-LVN 694
+ D++A +R+I+ E + DAL LI A+GS RDA ++LDQ G TS+ V
Sbjct: 190 EPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGETSAEQVR 249
Query: 695 XXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ D + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEI 299
Score = 38 (18.4 bits), Expect = 2.0e-44, Sum P(2) = 2.0e-44
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 764 ELERLKHALKLLSEAEKQLRLSS 786
EL R KLL++ E LRL S
Sbjct: 450 ELIRANRDGKLLADIEMDLRLVS 472
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 471 (170.9 bits), Expect = 1.2e-43, P = 1.2e-43
Identities = 102/293 (34%), Positives = 162/293 (55%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNXX 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++
Sbjct: 181 DIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 XXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
D + + L D+G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLL 293
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 467 (169.5 bits), Expect = 3.3e-43, P = 3.3e-43
Identities = 100/320 (31%), Positives = 173/320 (54%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E++GQ +V+ L N ++ ++A YLF GPRGTGKT+TAK+ + A+NC
Sbjct: 4 ALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C + N E+D + +G+D +R + + + L A ++KV
Sbjct: 64 EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIK--LVPAQGKYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ V+FI TT+ + VP +I SRCQ++ F +I
Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXX 699
I L+ I+ +E L E +AL LIA ++G LRDA +++DQ+ + +IT
Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGF 241
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTIGG 757
++ + + E+++ G+D + + Q+ + +++I +
Sbjct: 242 VSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEV-- 299
Query: 758 RSLTEAELERLKHALKLLSE 777
L LE+L+ L E
Sbjct: 300 EELMPEVLEKLRSEAALWEE 319
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 466 (169.1 bits), Expect = 4.3e-43, P = 4.3e-43
Identities = 98/292 (33%), Positives = 158/292 (54%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXX 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 XXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 455 (165.2 bits), Expect = 6.5e-42, P = 6.5e-42
Identities = 110/325 (33%), Positives = 171/325 (52%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAVT-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGK--RITSSL-VN 694
IV R+ KI E L VE +L++IA ADG +RDA ++LDQ +S G ++ +L +
Sbjct: 182 AIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLIT 241
Query: 695 XXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
SD ET+ EL+ G DP L+ + D++
Sbjct: 242 GAVSQLYIGKLAKSLHDKNVSDALETLN---ELLQQGKDPAKLIEDMIFYFRDMLLYKTA 298
Query: 755 IGGRSLTEAELERLK--HALKLLSE 777
G E LE++K + LSE
Sbjct: 299 PG----LEGVLEKVKVDETFRELSE 319
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 431 (156.8 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 92/296 (31%), Positives = 159/296 (53%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ KY+P DE++GQ+ +V+ L +I+R +A L GP GTGKT+TA+ + +L C+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C +SG + +E+D + G++ VR +++ + P S ++K +
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEG-ALYKPLLS-KYKSY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L + A LK LEEPPQ V F TT++ +P +I SRCQ Y +++ I
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLVNXXXX 698
RL +++ +E + + DA+ IA ADGSLRDA ++L+Q++L +IT ++
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMG 243
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
++ D ++ + +L G + + + +L +LI + I T
Sbjct: 244 LVDLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLT 299
Score = 49 (22.3 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 906 ITCRNSEKLGEIWAQC-IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSR 964
+T +S K G C + +C +++++ + S++E+ + ++Y+A ++ S
Sbjct: 298 LTAEDSSKSGFF---CRLAQCMLSSIEEIKSFNCDH-SVAELAIIRMSYIA----NLPSP 349
Query: 965 AERFLSSITNSIETVLRRNVEV 986
E + +N + T+L RN E+
Sbjct: 350 GE-IIKIFSNEMRTILPRNSEI 370
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 431 (156.8 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 92/296 (31%), Positives = 159/296 (53%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ KY+P DE++GQ+ +V+ L +I+R +A L GP GTGKT+TA+ + +L C+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C +SG + +E+D + G++ VR +++ + P S ++K +
Sbjct: 66 NRTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEG-ALYKPLLS-KYKSY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L + A LK LEEPPQ V F TT++ +P +I SRCQ Y +++ I
Sbjct: 124 IVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSRVVI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLVNXXXX 698
RL +++ +E + + DA+ IA ADGSLRDA ++L+Q++L +IT ++
Sbjct: 184 AERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRNKMG 243
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
++ D ++ + +L G + + + +L +LI + I T
Sbjct: 244 LVDLSEVYMLLDSIIAGDCKTSLGKLNDLYSKGYEMLTIFMELVALINEKIQDKLT 299
Score = 49 (22.3 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
Identities = 18/82 (21%), Positives = 42/82 (51%)
Query: 906 ITCRNSEKLGEIWAQC-IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSR 964
+T +S K G C + +C +++++ + S++E+ + ++Y+A ++ S
Sbjct: 298 LTAEDSSKSGFF---CRLAQCMLSSIEEIKSFNCDH-SVAELAIIRMSYIA----NLPSP 349
Query: 965 AERFLSSITNSIETVLRRNVEV 986
E + +N + T+L RN E+
Sbjct: 350 GE-IIKIFSNEMRTILPRNSEI 370
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 452 (164.2 bits), Expect = 1.4e-41, P = 1.4e-41
Identities = 85/217 (39%), Positives = 132/217 (60%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
+Y+P F ++GQ VV +L ++ +++P YLF GP G GKTS A+I + ALNCV +
Sbjct: 9 RYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNCVQRE 68
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
++PCG C C + +G + N +E+DG + G+ VR I + + P R+KVF+ID
Sbjct: 69 ASEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEIL--FPPHGTRYKVFIID 126
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E H+L + + A LK +EEPP VVFIF TT++ +P +++SRCQ++ F + +V
Sbjct: 127 EVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVDTQTLVCA 186
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
L + + + + VE L IA + GS+RDA T+ DQ
Sbjct: 187 LAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQ 223
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 444 (161.4 bits), Expect = 9.7e-41, P = 9.7e-41
Identities = 94/223 (42%), Positives = 138/223 (61%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+++L+ KY+P FDELIGQ V SL ++ R+A YLF G RG+GKTS+A+IFS AL
Sbjct: 2 LQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRAL 61
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C PCG C+ C + GK + +E+D + +GL+ ++ +++ PS + RF
Sbjct: 62 VCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKY-TPSMA-RF 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + A LK LEEPP V FI TTD +P ++ SR Q + F +I
Sbjct: 120 KIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQ 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+I+ L++I +EN+ E +AL IA + +GSLRD T+LDQ
Sbjct: 180 SEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQ 222
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 410 (149.4 bits), Expect = 4.3e-37, P = 4.3e-37
Identities = 88/290 (30%), Positives = 160/290 (55%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
S + KY+P F +LIGQ ++V+ L N +I L G G GKT+ A+I S LNC
Sbjct: 15 SFALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNC 74
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
++ + PC C+ C + + +E+D + ++ V+ IL++ S +P +S +FKV
Sbjct: 75 ISGPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILEN-SRYMPISS-KFKV 132
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEP V FI TT++ +P +I SRCQ++ F +I
Sbjct: 133 YIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTDK 192
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITS-SLVNXXXX 698
+V L+ ++ +EN++ + +++ LIA NADGS+R+A ++L+Q ++ +I S ++
Sbjct: 193 LVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEMLG 252
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ + E + + E +S + ++++ + +I +I
Sbjct: 253 YVSRHTLLEIIEPLIIGNATEALNKFEEACNS-YNSVIILDNMLQIIYEI 301
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 409 (149.0 bits), Expect = 5.5e-37, P = 5.5e-37
Identities = 104/323 (32%), Positives = 165/323 (51%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F E+IGQ VV++L N + + + YLF G RG GKT+ ++I + LNC
Sbjct: 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C + G+ + EVD ++ ++ R +L ++ P+ RFKV+
Sbjct: 66 KGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYA-PTKG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V FI TTD +P ++ SRC ++ ++ I
Sbjct: 124 LIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNXXXXX 699
A + + EEN+ E ALDL+A A+GS+RDA ++LDQ G ++ + V
Sbjct: 184 AAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLGT 243
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + L++ GVD ++ L SL+ I A T+ +
Sbjct: 244 IEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQI-AIIQTVP-EA 301
Query: 760 LTEAELERLKHALKLLSEAEKQL 782
L E + E+L+ KLL + QL
Sbjct: 302 LIENDSEQLRQLAKLLDREDVQL 324
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 425 (154.7 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 106/327 (32%), Positives = 174/327 (53%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++K++P F E++GQ+ V+ +L N +++ R+ YLF G RG GKT+ ++F+ LNC
Sbjct: 5 ALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV
Sbjct: 65 ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQ--YKPARGRFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ I +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVEN 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXX 699
I +L K+ E ++ + AL+L+A ADGS+RDA ++ DQ LG + S +
Sbjct: 183 IQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLG 242
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII---AGTYTI 755
A+S T + V E L +GV+ L+ QL++ + I A T+
Sbjct: 243 TLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATL 302
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQL 782
+SL EA R++ K L+ + QL
Sbjct: 303 D-KSLPEAS--RIESLAKTLAPQDVQL 326
Score = 40 (19.1 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 26/108 (24%), Positives = 46/108 (42%)
Query: 1044 VNVARKVSRGSFNELEGKF-KGEDDHSNCS-PLFADGNSEISSTKGRRQEIPMQRIESII 1101
V V ++ + S N E D S S P A ++ S +RQE+ + +
Sbjct: 430 VPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRS---KRQEVQNKGADGKK 486
Query: 1102 REQRLETAWLQATEKGAPGSLG-HLRPEKN---QVLPQEDIYRQNHME 1145
+ T A E+ A + + PE+N ++ P+E+IY+ M+
Sbjct: 487 SDATSATP-ASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQ 533
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 425 (154.7 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 106/327 (32%), Positives = 174/327 (53%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++K++P F E++GQ+ V+ +L N +++ R+ YLF G RG GKT+ ++F+ LNC
Sbjct: 5 ALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV
Sbjct: 65 ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQ--YKPARGRFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ I +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPISVEN 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXX 699
I +L K+ E ++ + AL+L+A ADGS+RDA ++ DQ LG + S +
Sbjct: 183 IQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVAHMLG 242
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII---AGTYTI 755
A+S T + V E L +GV+ L+ QL++ + I A T+
Sbjct: 243 TLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQALPATL 302
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQL 782
+SL EA R++ K L+ + QL
Sbjct: 303 D-KSLPEAS--RIESLAKTLAPQDVQL 326
Score = 40 (19.1 bits), Expect = 6.2e-36, Sum P(2) = 6.2e-36
Identities = 26/108 (24%), Positives = 46/108 (42%)
Query: 1044 VNVARKVSRGSFNELEGKF-KGEDDHSNCS-PLFADGNSEISSTKGRRQEIPMQRIESII 1101
V V ++ + S N E D S S P A ++ S +RQE+ + +
Sbjct: 430 VPVTQREASHSINAPEASVVTNTDTQSQASMPALAGLRHQLRS---KRQEVQNKGADGKK 486
Query: 1102 REQRLETAWLQATEKGAPGSLG-HLRPEKN---QVLPQEDIYRQNHME 1145
+ T A E+ A + + PE+N ++ P+E+IY+ M+
Sbjct: 487 SDATSATP-ASALERIAQRAQQVQVSPERNDEDELEPEEEIYQWRPMQ 533
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 420 (152.9 bits), Expect = 1.6e-35, P = 1.6e-35
Identities = 94/315 (29%), Positives = 165/315 (52%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F++++GQ+ V+ +L N +++ R+ YLF G RG GKTS A++F+ LNC
Sbjct: 6 LARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +EVD ++ +D R +L ++ P+ RFKV+
Sbjct: 66 TGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYR-PTRG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P ++ SRC ++ + +I
Sbjct: 124 LIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQQEI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXXXX 699
+L+ I +E L E +AL L+A +A+GS+RDA ++ DQ ++ G + + V
Sbjct: 184 GTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQSMLGS 243
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG-- 757
+D ++ +++ G D ++ L L+ I +
Sbjct: 244 IDEQHVLGLLKALTDADIGALMQSCAQVLAYGADAQEVLRSLLELLHQITLTQFAPAAAQ 303
Query: 758 RSLTEAELERLKHAL 772
+SL A+++ L
Sbjct: 304 QSLYSAQIQAFAEQL 318
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 393 (143.4 bits), Expect = 2.8e-35, P = 2.8e-35
Identities = 94/287 (32%), Positives = 152/287 (52%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L+ KY+P FD+L+GQ+++V+ L N+ S G + L G G GKT+ A+I S LNC
Sbjct: 2 NLALKYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG C C + + + +E+D + +D +R IL+ S LP +S RFKV
Sbjct: 62 ENGPTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILES-SNYLPVSS-RFKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LE P Q FI TT++ VP ++ SRC + K+
Sbjct: 120 YIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPIKQ 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNXXXX 698
+ L KISA+EN+ + +L LIA N+ GS+R++ +L+Q L +I+ V
Sbjct: 180 LYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVRELLG 239
Query: 699 XXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+SSD + REL ++ P+++ + ++
Sbjct: 240 CVDKKILEGIVRDIISSDVKSAIDGFRELCNAST-PVIIFEGMQKVV 285
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 400 (145.9 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 99/318 (31%), Positives = 163/318 (51%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F++LIGQ +V++L N GRIA ++ G RG GKT+TA++ + LN
Sbjct: 32 LARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNYE 91
Query: 521 ATDQTK--------PCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA 568
K P + C+ ++ + + +E+D ++ G+ +R +L SA
Sbjct: 92 PKADAKGKKGKAAGPSIHLDPPGEHCDAIMASRHPDVLELDAASRTGVADMRDLLD--SA 149
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
S R+KV++IDE H+L + ++ A LK LEEPP + FIF TT+I VP ++ SRCQ
Sbjct: 150 RYGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRCQ 209
Query: 629 KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ---LSLLG 685
++ ++ G++ L ++ E NV +AL LIA A+GS+RD ++LDQ + G
Sbjct: 210 RFDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQTTDG 269
Query: 686 KRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+ ++ + V A+ D + RE + G DP V++ + +
Sbjct: 270 EEVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDILDIA 329
Query: 746 MDIIAGTYTIGGRSLTEA 763
DI T G T+A
Sbjct: 330 ADISVAQAT--GDDWTQA 345
Score = 41 (19.5 bits), Expect = 2.2e-34, Sum P(2) = 2.2e-34
Identities = 15/68 (22%), Positives = 33/68 (48%)
Query: 1043 PVNVARKVSRGSFNELEGKFK-GEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESII 1101
P +A ++ G+ L G+ K + +S+ + +++ S + R + +RIES
Sbjct: 470 PGKLACALAPGAPQGLLGRLKIFLETYSDLDWSVEEADTDTESVRERERREKAERIESAK 529
Query: 1102 REQRLETA 1109
++ R+ A
Sbjct: 530 QDPRVAAA 537
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 401 (146.2 bits), Expect = 3.9e-34, P = 3.9e-34
Identities = 99/325 (30%), Positives = 165/325 (50%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ P A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-P-ARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNXXXXX 699
+L I EE++ EP AL L+A A+GSLRDA ++ DQ G ++++ V+
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG--G 757
+ ++ + E G++ L+ ++ L+ I + G
Sbjct: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 303
Query: 758 RSLTEAELERLKHALKLLSEAEKQL 782
+ EL R++ + + + QL
Sbjct: 304 NDMAAIEL-RMRELARTIPPTDIQL 327
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 399 (145.5 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 88/226 (38%), Positives = 132/226 (58%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV L N +S+ R+ YLF G RG GKT+ A+IF+ +LNC
Sbjct: 6 LARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
KPCG C C D G+ + +E+D +K +D R IL ++ PS RFKV+
Sbjct: 66 LGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYA-PSRG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V FI TTD +P ++ SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
+L +I + E ++ E L L+A A GS+RD+ ++ DQ G+
Sbjct: 184 EDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQ 229
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 399 (145.5 bits), Expect = 1.1e-33, P = 1.1e-33
Identities = 88/226 (38%), Positives = 132/226 (58%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV L N +S+ R+ YLF G RG GKT+ A+IF+ +LNC
Sbjct: 6 LARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
KPCG C C D G+ + +E+D +K +D R IL ++ PS RFKV+
Sbjct: 66 LGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYA-PSRG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V FI TTD +P ++ SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALTVKQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
+L +I + E ++ E L L+A A GS+RD+ ++ DQ G+
Sbjct: 184 EDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQ 229
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 366 (133.9 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 93/295 (31%), Positives = 142/295 (48%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E++GQ V L + GRI YLF GPRG GKTS+A+I + +LNC
Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
PCG C C S + +E+D + G+D R L+ + P S R+
Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPVQS-RY 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DE H++ + + A LK +EEPP+ ++FIF TT+ + V +I+SR Y F +
Sbjct: 120 RVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---RITSSLVN 694
+ A L +I +E + V+ L+ GS RD ++LDQL L G +T +
Sbjct: 180 RTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRAL 238
Query: 695 XXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ D A ++D G DP + L D+I
Sbjct: 239 GLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLI 293
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 223 (83.6 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 58/208 (27%), Positives = 100/208 (48%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E+D + G++ VR I++ + S FKV++IDE H+L + + A LK LEEP
Sbjct: 67 IEIDAASNNGVENVRNIIE--DSRYKSMDSEFKVYIIDEVHMLSTGAFNALLKTLEEPSS 124
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN-----LNVEPDAL 660
VFI TTD +P +I SR Q++ F +I + DIV +L+ I EN + E DAL
Sbjct: 125 GTVFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYSYERDAL 184
Query: 661 DLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAET 720
I A+G +RD+ T L+++ + V+ + D ++
Sbjct: 185 SFIGKLANGGMRDSITRLEKVLDYSHHVDMEAVSNALGVPDYETFASLVEAIANYDGSKC 244
Query: 721 VKRARELMDSGVDPMVLMSQLASLIMDI 748
++ + SG D ++ ++++
Sbjct: 245 LEIVNDFHYSGKDLKLVTRNFTDFLLEV 272
Score = 131 (51.2 bits), Expect = 6.8e-25, Sum P(2) = 6.8e-25
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+L+ KY+P F+E++ Q V + L+N + G I YLF G GTGKT+TA+IF+ +N
Sbjct: 2 NLASKYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTARIFAKDVN 60
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 215 (80.7 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 86/335 (25%), Positives = 152/335 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 40 EKYRPKNVDEVAFQDEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 96
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + + +E++ ++++G+ +R +K + S S P
Sbjct: 97 ELFR----------------QRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCP 140
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I I + + SRC K+ F +
Sbjct: 141 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPL 200
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL +S +EN+ + +A+ + +DG LR A T L + L GK IT V
Sbjct: 201 SDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTV 260
Query: 694 NXXXXXXXXXXXXXXXXXAMSSDTAETVKR-ARELMDSGVDPMVLMSQLASLIMDIIAGT 752
A SS + E ++ A+ L++ G L++QL ++++ +
Sbjct: 261 TEIAGVIPRETIDGLLS-ACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVE--SED 317
Query: 753 YTIGGRSLTEAELERLKHALKLLSE-AEKQLRLSS 786
++ +S+ +E+L K L++ A++ L+L S
Sbjct: 318 FSDKQKSII---VEKLAEVDKCLADGADEYLQLIS 349
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 215 (80.7 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 86/335 (25%), Positives = 152/335 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 40 EKYRPKNVDEVAFQDEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 96
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + + +E++ ++++G+ +R +K + S S P
Sbjct: 97 ELFR----------------QRVLELNASDERGIQVIREKVKAFAQLTASGSRADGKVCP 140
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I I + + SRC K+ F +
Sbjct: 141 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPL 200
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL +S +EN+ + +A+ + +DG LR A T L + L GK IT V
Sbjct: 201 SDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTV 260
Query: 694 NXXXXXXXXXXXXXXXXXAMSSDTAETVKR-ARELMDSGVDPMVLMSQLASLIMDIIAGT 752
A SS + E ++ A+ L++ G L++QL ++++ +
Sbjct: 261 TEIAGVIPRETIDGLLS-ACSSGSFEKLETVAKNLINEGYAVAQLVNQLHDIVVE--SED 317
Query: 753 YTIGGRSLTEAELERLKHALKLLSE-AEKQLRLSS 786
++ +S+ +E+L K L++ A++ L+L S
Sbjct: 318 FSDKQKSII---VEKLAEVDKCLADGADEYLQLIS 349
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 204 (76.9 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 59/205 (28%), Positives = 99/205 (48%)
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
Q I V+ L+N+I++ RI+ YL +G +GTGK +TA + + C ++ +PC C C
Sbjct: 12 QPIGVKMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCSQRNRVEPCHVCTNCK 71
Query: 536 DFISGKSRNF--MEVDGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSKT 592
SG N ++ DG + K ++ + + S GL + KV++I+ + +
Sbjct: 72 RIDSGNHPNLHIVKPDGLSIKK-QQIHDLQEEFSKTGLEANK---KVYIIEHADRMTANA 127
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
A LKFLEEP I +T + +I SRCQ F + ++ RL+ +E
Sbjct: 128 ANALLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRLQ----DEG 183
Query: 653 LNVEPDALDLIALNADGSLRDAETM 677
+ V +L +A S +A T+
Sbjct: 184 ITV---SLSTLAAQLTNSFDEALTL 205
Score = 41 (19.5 bits), Expect = 2.8e-13, Sum P(2) = 2.8e-13
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 672 RDAETMLDQLSLLGKRITSSLVN 694
R+ + M + S KRI S+L N
Sbjct: 277 REQKEMFESFSYAQKRIVSALFN 299
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 202 (76.2 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 74/296 (25%), Positives = 127/296 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK IT ++
Sbjct: 203 SDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
Query: 694 NXXXXXXXXXXXXXXXXXAMSS--DTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
S D E V ++L+D G L++QL ++++
Sbjct: 263 TDIAGVIPAEKIDGVFAACQSGSFDKLEAV--VKDLIDEGHAATQLVNQLHDVVVE 316
>UNIPROTKB|E2R2M6 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5984 OMA:ICFRGTF
GeneTree:ENSGT00550000074917 EMBL:AAEX03017297 RefSeq:XP_535837.1
Ensembl:ENSCAFT00000021708 GeneID:478667 KEGG:cfa:478667
NextBio:20853970 Uniprot:E2R2M6
Length = 363
Score = 201 (75.8 bits), Expect = 8.2e-13, P = 8.2e-13
Identities = 84/336 (25%), Positives = 143/336 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 41 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 97
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 98 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 141
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 142 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 201
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +E++ V + + + ++G LR A T L + L GK IT ++
Sbjct: 202 SDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 261
Query: 694 NXXXXXXXXXXXXXXXXXAMSS--DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
S D E V ++L+D G +QL S D++
Sbjct: 262 TDIAGVIPAGTIDGIFAACQSGSFDKLEAV--VKDLIDEGH----AATQLVSQFHDVVVE 315
Query: 752 TYTIGGRSLTEAELERLKHALKLLSE-AEKQLRLSS 786
+ + + E+L A K L++ A++ L+L S
Sbjct: 316 NDNLSDKQKSIIT-EKLAEADKCLADGADEHLQLIS 350
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 196 (74.1 bits), Expect = 1.8e-12, P = 1.8e-12
Identities = 66/210 (31%), Positives = 93/210 (44%)
Query: 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCG 529
F ++GQ V L + G+ A YLF+G G GK +TA F A C D CG
Sbjct: 3 FSRVLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRRDDG---CG 59
Query: 530 YCRECNDF--ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHL 587
C C + + + +G K +D+VR + + LS P +P K +ID+
Sbjct: 60 SCPSCRKMAGLQHPDLHRLAPEGAFIK-IDQVRELQRELSLR-PVEAP-MKACIIDDADR 116
Query: 588 LPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKI 647
L A LK LEEPP + I +TT+ + +++SRCQ F+ + + I L
Sbjct: 117 LNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRCQLLRFSPLPERVIEEYLTDA 176
Query: 648 SAEENLNVEPDALDLIALNADGSLRDAETM 677
E P A L A A GSL A M
Sbjct: 177 GRE------PAAARLAASLAGGSLSRALEM 200
>TIGR_CMR|DET_0535 [details] [associations]
symbol:DET_0535 "DNA polymerase III, delta prime subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0470 GO:GO:0003887 KO:K02341 RefSeq:YP_181279.1
ProteinModelPortal:Q3Z920 STRING:Q3Z920 GeneID:3230147
KEGG:det:DET0535 PATRIC:21608137 HOGENOM:HOG000192593 OMA:AFIKIDQ
ProtClustDB:CLSK935628 BioCyc:DETH243164:GJNF-535-MONOMER
Uniprot:Q3Z920
Length = 339
Score = 195 (73.7 bits), Expect = 3.0e-12, P = 3.0e-12
Identities = 53/168 (31%), Positives = 86/168 (51%)
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
++IGQ+ V L N++++ ++ Y+F G G GK A F+ ALNC A + PC C
Sbjct: 3 QIIGQDKAVSFLCNSLNQDKLCHAYVFYGQSGVGKKRMALSFAQALNCQAA--SPPCQEC 60
Query: 532 RECNDFISGKSRNFMEV---------DGTNKK--GLDRVRYILKHLSAGLPSASPRFKVF 580
C ++G + + + DG K G+ +V I +H +A LP ++KVF
Sbjct: 61 PVCERIMAGNFPDVIHIELLSAEDSSDGKAKAEIGVKQVEDI-QH-AASLPPFEGKYKVF 118
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
+I + L ++ LK LEEP + +FI +T D + ++ SRCQ
Sbjct: 119 IIHQAEKLSVESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVLSRCQ 166
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 148 (57.2 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 38/147 (25%), Positives = 74/147 (50%)
Query: 534 CNDFISGKS-RN-FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
C I G + RN ME++ ++ +G+D VR +K+ ++ + FK+ ++DE +
Sbjct: 76 CARKIYGPNYRNQLMELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLA 135
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
A + +E+ + V F I I+ + +IQSRC ++ F + +I + + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 652 NLNVEPDALDLIALNADGSLRDAETML 678
+ N++PDA + + G +R A +L
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNIL 222
Score = 96 (38.9 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P ++++ ++ +L IS R+ P LF GP GTGKTST
Sbjct: 27 EKYRPANLEDVVSHKDIISTLEKFISSNRV-PHMLFYGPPGTGKTST 72
>UNIPROTKB|F1SFI3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:CU633961 Ensembl:ENSSSCT00000012916 Uniprot:F1SFI3
Length = 366
Score = 193 (73.0 bits), Expect = 6.8e-12, P = 6.8e-12
Identities = 81/338 (23%), Positives = 143/338 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------- 574
+ + +E++ ++++G+ VR +K+ + S S
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSEISGKP 142
Query: 575 -PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
P FK+ ++DE + S A + +E+ + F I + + + SRC K+ F
Sbjct: 143 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 202
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSS 691
+ D RL I+ +E++ + + + + ++G LR A T L + L GK +T
Sbjct: 203 PLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEK 262
Query: 692 LVNXXXXXXXXXXXXXXXXXAMSS--DTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++ S D E V ++L+D G ++QL D++
Sbjct: 263 MITDIAGVVPTETIDGVLAACQSGSFDKLEAV--VKDLIDEGHAATQFVNQLH----DVV 316
Query: 750 AGTYTIGGRSLTEAELERLKHALKLLSE-AEKQLRLSS 786
+ + + E+L A K L++ A++ L+L S
Sbjct: 317 VENDNLSDKQKSVIT-EKLAEADKCLADGADEHLQLIS 353
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 189 (71.6 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 64/240 (26%), Positives = 108/240 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK IT ++
Sbjct: 203 SDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
>MGI|MGI:2146571 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:2146571
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 EMBL:AK146954
EMBL:BC003335 IPI:IPI00319874 RefSeq:NP_663455.1 UniGene:Mm.386835
ProteinModelPortal:Q99J62 SMR:Q99J62 IntAct:Q99J62 STRING:Q99J62
PhosphoSite:Q99J62 PaxDb:Q99J62 PRIDE:Q99J62
Ensembl:ENSMUST00000023598 GeneID:106344 KEGG:mmu:106344
UCSC:uc007yth.1 OrthoDB:EOG4Q58PN NextBio:358165 Bgee:Q99J62
CleanEx:MM_RFC4 Genevestigator:Q99J62 GermOnline:ENSMUSG00000022881
Uniprot:Q99J62
Length = 364
Score = 190 (71.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 73/296 (24%), Positives = 126/296 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQDEVVAVLRKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK ++ ++
Sbjct: 203 SDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
Query: 694 NXXXXXXXXXXXXXXXXXAMSS--DTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
S D E V + L+D G L++QL I++
Sbjct: 263 TDIAGVIPAATIDGIFTACHSGSFDKLEAV--VKNLIDEGHAATQLVNQLHDAIIE 316
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 190 (71.9 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 74/296 (25%), Positives = 125/296 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK I+ ++
Sbjct: 203 SDKIQQKRLLDIAEKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVI 262
Query: 694 NXXXXXXXXXXXXXXXXXAMSS--DTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
S D E V + L+D G L++QL I++
Sbjct: 263 TDIAGVIPAATIEGIVTACHSGSFDKLEAV--LKNLIDEGHAATQLVNQLHDSIIE 316
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 138 (53.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 29/148 (19%), Positives = 70/148 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 82 LELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 141
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + ++ RL + +E++++ PD + I
Sbjct: 142 NTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVT 201
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R + +L + ++T V
Sbjct: 202 LSTGDMRRSLNILQSTHMAYGKVTEETV 229
Score = 98 (39.6 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P D+LI ++ ++ IS R+ P LF GP GTGKTST
Sbjct: 18 EKYRPQTLDDLISHQDILSTIQKFISEDRL-PHLLFYGPPGTGKTST 63
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 186 (70.5 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 73/295 (24%), Positives = 127/295 (43%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 37 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELYGP 93
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS----AGL-PSAS--P 575
D + + +E++ ++++G+ VR +K + AG P P
Sbjct: 94 DLYR----------------QRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCP 137
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 138 PFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 197
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLV 693
+ R+ +I +ENL + +D + ++G LR A T L + L + IT +
Sbjct: 198 ANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTI 257
Query: 694 NXXXXXXXXXXXXXXXXXAMSSDTAETVKRA-RELMDSGVDPMVLMSQLASLIMD 747
T E ++ A ++++D G L++QL +I++
Sbjct: 258 IEIAGVVPPKVIQSLLHICYKG-TFEKLEVAVKDMIDQGYAATNLLNQLHDVIIE 311
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 184 (69.8 bits), Expect = 6.1e-11, P = 6.1e-11
Identities = 79/295 (26%), Positives = 123/295 (41%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ V L T+ + P LF GP GTGKTST + L
Sbjct: 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTSTILALTKELY---- 83
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH---LSAGLPSAS----- 574
P D + KSR +E++ ++++G+ VR +K+ L+ PS
Sbjct: 84 ---GP--------DLM--KSR-ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENY 129
Query: 575 --PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
P +K+ ++DE + + A + +E F I + + + SRC K+ F
Sbjct: 130 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRF 189
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS----LLG--K 686
+ + + RLR IS +EN+ + L+ I + G LR T+L S LG K
Sbjct: 190 KALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGK 249
Query: 687 RITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
ITS+ V S D E K M SG +++QL
Sbjct: 250 NITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 183 (69.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 65/271 (23%), Positives = 106/271 (39%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++ QN V L + R + P +F GP GTGKTS A+N +A
Sbjct: 8 EKYRPKRLDDIVHQNNAVMMLKEVV-RTKNMPHLIFHGPPGTGKTS-------AINALAH 59
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ + + R + V K R+ + + P +K+ V+
Sbjct: 60 ELFGKENISERVLELNASDDRG-INVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVL 118
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE ++ A + +E FI I I + I SRC Y F I
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKE 178
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXX 702
+L I EN+++ DAL+ I +G LR A ++L S + +IT + V
Sbjct: 179 KLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD 238
Query: 703 XXXXXXXXXAMSSDTAETVKRARELMDSGVD 733
D K +++++ G D
Sbjct: 239 NIVYKIIDACKMKDLKLVEKTVQDIIEDGFD 269
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 183 (69.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 65/271 (23%), Positives = 106/271 (39%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++ QN V L + R + P +F GP GTGKTS A+N +A
Sbjct: 8 EKYRPKRLDDIVHQNNAVMMLKEVV-RTKNMPHLIFHGPPGTGKTS-------AINALAH 59
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ + + R + V K R+ + + P +K+ V+
Sbjct: 60 ELFGKENISERVLELNASDDRG-INVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVL 118
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE ++ A + +E FI I I + I SRC Y F I
Sbjct: 119 DEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKE 178
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXX 702
+L I EN+++ DAL+ I +G LR A ++L S + +IT + V
Sbjct: 179 KLLYICQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSD 238
Query: 703 XXXXXXXXXAMSSDTAETVKRARELMDSGVD 733
D K +++++ G D
Sbjct: 239 NIVYKIIDACKMKDLKLVEKTVQDIIEDGFD 269
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 183 (69.5 bits), Expect = 6.9e-11, P = 6.9e-11
Identities = 70/287 (24%), Positives = 119/287 (41%)
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL--NCVAT 522
Y+P D++ Q VQ L T+ + P LF G GTGKTST S L +
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNL-PHMLFYGSPGTGKTSTILALSRELFGPQLMK 83
Query: 523 DQTKPCGYCRECN-DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ E I K ++F + TNK +D G P P FK+ +
Sbjct: 84 SRVLELNASDERGISIIREKVKSFAKTTVTNK--VD-----------GYPC--PPFKIII 128
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE + A + +E + F I + + + SRC KY F + + ++V
Sbjct: 129 LDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMV 188
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNXXXXX 699
RL I+A++ +++EP ++ + + G +R A T L + L G IT S V
Sbjct: 189 KRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGA 248
Query: 700 XXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
A + + + +R++ G +++SQL +++
Sbjct: 249 VPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLL 295
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 150 (57.9 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 38/132 (28%), Positives = 65/132 (49%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 133 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 190
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC ++K++D I+ RL ++ +ENL+V D L+
Sbjct: 191 YSKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEA 250
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 251 IIFTAQGDMRQA 262
Score = 82 (33.9 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 70 EKYRPLKLNEIVGNEETVSRLEVFAREGNV-PNIIIAGPPGTGKTTSILCLARAL 123
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 183 (69.5 bits), Expect = 9.0e-11, P = 9.0e-11
Identities = 61/231 (26%), Positives = 99/231 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DEL+ +V++L I R P LF GP GTGKT+T + +AA +
Sbjct: 33 EKYRPSKLDELVAHEQIVKTLTKFIEN-RTLPHLLFYGPPGTGKTTT--VLAAARQMYSP 89
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
TK E N + R V T L+ S + + FK+ ++
Sbjct: 90 --TKMASMVLELN---ASDERGIDVVRNTIVNFAQTKG--LQAFSTSSNTGTVPFKLVIL 142
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + A + +E+ V F I + ++ +IQSRC ++ F + IV
Sbjct: 143 DEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVP 202
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
RL I E L + PD D + + + G +R L ++ ++ + V
Sbjct: 203 RLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAMSFDTVSENTV 253
>UNIPROTKB|Q29RS9 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917
OMA:QQLSQNC EMBL:DAAA02001847 EMBL:DAAA02001846 EMBL:BC114041
IPI:IPI00728867 RefSeq:NP_001039359.1 UniGene:Bt.102331
STRING:Q29RS9 Ensembl:ENSBTAT00000045810 GeneID:504637
KEGG:bta:504637 NextBio:20866768 Uniprot:Q29RS9
Length = 337
Score = 181 (68.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 62/240 (25%), Positives = 108/240 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +E++ + + + + ++G LR A T L + L GK +T ++
Sbjct: 203 SDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEVTEKVI 262
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 181 (68.8 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 58/231 (25%), Positives = 101/231 (43%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P D++ Q V+ +L +++ G + P LF GP GTGKTST I + A++ +
Sbjct: 15 KYRPKTVDDVSYQEDVISALKKSLNTGNL-PHLLFYGPPGTGKTST--ILAIAMDIYGPE 71
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
K E N + R +EV T K Y + + G + FK+ ++D
Sbjct: 72 LMKQ--RVLELN---ASDERG-IEVVRTKIKNF--AGYAVNKTTTGTSNPGATFKLIILD 123
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
E + + A + +E + F + I + + SRC K+ F + + R
Sbjct: 124 EADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIER 183
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
L+ IS +E + E I + ++G +R A T L +I+ ++
Sbjct: 184 LKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVI 234
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 134 (52.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 32/134 (23%), Positives = 64/134 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E++ ++ +G++ +R +K + + S P + K+ ++DE + + + + +E
Sbjct: 83 LELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYS 142
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F + + ++QSRC + K+ D ++ R+ KI EN+ D LD +
Sbjct: 143 DTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALT 202
Query: 665 LNADGSLRDAETML 678
ADG LR A L
Sbjct: 203 FIADGDLRKAVNCL 216
Score = 95 (38.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P F DE++G V+ +L + I+ G + P L G GTGKT++
Sbjct: 20 EKYRPEFLDEVVGNPFVINTLKSIITSGNM-PNLLLAGAPGTGKTTS 65
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 134 (52.2 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 32/134 (23%), Positives = 64/134 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E++ ++ +G++ +R +K + + S P + K+ ++DE + + + + +E
Sbjct: 83 LELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQSLRRIMELYS 142
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F + + ++QSRC + K+ D ++ R+ KI EN+ D LD +
Sbjct: 143 DTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKYTDDGLDALT 202
Query: 665 LNADGSLRDAETML 678
ADG LR A L
Sbjct: 203 FIADGDLRKAVNCL 216
Score = 95 (38.5 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P F DE++G V+ +L + I+ G + P L G GTGKT++
Sbjct: 20 EKYRPEFLDEVVGNPFVINTLKSIITSGNM-PNLLLAGAPGTGKTTS 65
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 181 (68.8 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 66/233 (28%), Positives = 105/233 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST----AK-IFSAAL 517
+KY+P D++ Q+ + L T+ + P LF GP GTGKTST AK +F AL
Sbjct: 38 EKYRPKTLDDVAAQDHTTKVLQRTLQASNL-PHMLFYGPPGTGKTSTILALAKSLFGPAL 96
Query: 518 ------NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
A+D+ + G RE K + F V ++ GLD Y K+ P
Sbjct: 97 YRSRILELNASDE-RGIGIVRE-------KVKGFARVQLSHPTGLD-AEYFEKY-----P 142
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
P FK+ ++DE + A + +E+ + F + + + + SRC K+
Sbjct: 143 C--PPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFR 200
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL 684
F + + RL +I+ E L++E +D + +DG LR A T L + L
Sbjct: 201 FKPLDNSAAGDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARL 253
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 139 (54.0 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 35/130 (26%), Positives = 61/130 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N++G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 83 LELNASNERGIDVVRNKIKMFAQQKVTLPRG--RHKIVILDEADSMTEGAQQALRRTMEI 140
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
F + + IQSRC F K+ D ++A+L +++ E LN D L+
Sbjct: 141 YSSTTRFALACNTSEKIIEPIQSRCAMLRFTKLSDAQVLAKLIEVAKWEKLNYTEDGLEA 200
Query: 663 IALNADGSLR 672
I A G +R
Sbjct: 201 IVFTAQGDMR 210
Score = 87 (35.7 bits), Expect = 2.4e-10, Sum P(2) = 2.4e-10
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ F E++G V L ++G AP + GP G GKT+T + + L
Sbjct: 20 EKYRPVKFKEIVGNEDTVARLSVFATQGN-APNIIIAGPPGVGKTTTIQCLARIL 73
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 177 (67.4 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 64/223 (28%), Positives = 103/223 (46%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++ Q+ VV L + G + P L GP GTGKTST AA +
Sbjct: 34 EKYRPRNVDDVVEQSEVVAVLRKCVEGGDL-PNMLLYGPPGTGKTST---ILAASRQIFG 89
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH---LSAGL--PSASP-- 575
D K D I +E++ ++++G++ VR +K+ LSA P P
Sbjct: 90 DMFK---------DRI-------LELNASDERGINVVRTKIKNFSQLSASSVRPDGKPCP 133
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + A + +E+ + F I + + I SRC K+ F +
Sbjct: 134 PFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKAL 193
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETML 678
+ ++ RL+ I E + +E DA I + G LR A T L
Sbjct: 194 GEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTL 236
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 176 (67.0 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 54/216 (25%), Positives = 100/216 (46%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +E+ GQ +V ++ + G++ P LF GP GTGKTST I + A
Sbjct: 27 EKYRPDSLEEVKGQQEIVDTVRKFVETGKL-PHLLFYGPSGTGKTST--IIALAKEIYGA 83
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
K E N + R ++V K R I + +++ +FK+ ++
Sbjct: 84 TNYK--NMILELN---ASDDRG-IDVVRNQIKNFASTRQIFTK-NTSQTASNNQFKLIIL 136
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + + + + +E+ + F + + ++ SRC ++ F I I
Sbjct: 137 DEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKD 196
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETML 678
RL + +EN+N+ P+A+D + ++G +R A +L
Sbjct: 197 RLNTVIIKENVNISPEAIDALLKLSNGDMRRALNVL 232
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 127 (49.8 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 32/156 (20%), Positives = 78/156 (50%)
Query: 542 SRNFMEVDGTNKKGLDRVRYILKHLSAGLP--SASPRFKVFVIDECHLLPSKTWLAFLKF 599
SR +E++ ++ +G+D VR +K ++ + + + +K+ ++DE + + A +
Sbjct: 87 SRMVLELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRV 146
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659
+E+ + F + + + ++QSRC ++ F+ + RL++I +EN+ V+ A
Sbjct: 147 IEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKA 206
Query: 660 LDLIALNADGSLRDAETMLDQLSL--LGKRITSSLV 693
++ + G +R +L +S+ + IT +
Sbjct: 207 MNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAI 242
Score = 97 (39.2 bits), Expect = 6.0e-10, Sum P(2) = 6.0e-10
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P D+LI + Q++ I + P LF GP GTGKTST + + L
Sbjct: 28 EKYRPKNLDDLIAHEDITQTITKLIDNNTL-PHLLFYGPPGTGKTSTIQAIARKL 81
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 128 (50.1 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 30/148 (20%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALIT 206
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 207 LSSGDMRRALNILQSTNMAFGKVTEETV 234
Score = 94 (38.1 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 458 IRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
IR+L +KY+P D+LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 16 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 68
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 128 (50.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 30/148 (20%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 102 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 161
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 162 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALIT 221
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 222 LSSGDMRRALNILQSTNMAFGKVTEETV 249
Score = 94 (38.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 458 IRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
IR+L +KY+P D+LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 31 IRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 83
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 113 (44.8 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 30/137 (21%), Positives = 63/137 (45%)
Query: 538 ISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA 595
I GK S +E++ ++ +G+D VR +K ++ S FK+ ++DE + + A
Sbjct: 70 IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNA 129
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV 655
+ +E + F + + ++ SRC ++ F + I R+ + E L +
Sbjct: 130 LRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKL 189
Query: 656 EPDALDLIALNADGSLR 672
P+A + ++G +R
Sbjct: 190 SPNAEKALIELSNGDMR 206
Score = 109 (43.4 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 22/47 (46%), Positives = 31/47 (65%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P DE+ GQN V+ ++ + G++ P LF GP GTGKTST
Sbjct: 17 EKYRPETLDEVYGQNEVITTVRKFVDEGKL-PHLLFYGPPGTGKTST 62
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 142 (55.0 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 38/132 (28%), Positives = 62/132 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 108 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 165
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D I+ARL KI +E++ D L+
Sbjct: 166 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEA 225
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 226 IIFTAQGDMRQA 237
Score = 78 (32.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ E++G V L G + P + GP GTGKT++ + AL
Sbjct: 45 EKYRPLKLCEVVGNEDTVSRLEVFAKEGNV-PNIIIAGPPGTGKTTSILCLARAL 98
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 134 (52.2 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 34/132 (25%), Positives = 60/132 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 101 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 158
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D ++ARL + +E + D L+
Sbjct: 159 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEA 218
Query: 663 IALNADGSLRDA 674
+ A G +R A
Sbjct: 219 VIFTAQGDMRQA 230
Score = 84 (34.6 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 38 EKYRPVKLNEIVGNEDTVSRLEVFAKEGNV-PNIIIAGPPGTGKTTSILCLARAL 91
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 135 (52.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 31/148 (20%), Positives = 70/148 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EEN+++ D + +
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVT 206
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 207 LSSGDMRRALNILQSTNMAFGKVTEETV 234
Score = 84 (34.6 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P +LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 23 EKYRPQTLADLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 68
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 134 (52.2 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 31/148 (20%), Positives = 70/148 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EEN+++ D + +
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVT 206
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 207 LSSGDMRRALNILQSTNMAFGKVTEETV 234
Score = 84 (34.6 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P +LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 23 EKYRPQTLADLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 68
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 128 (50.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 30/148 (20%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVT 206
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 207 LSSGDMRRALNILQSTNMAFGKVTEETV 234
Score = 89 (36.4 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 458 IRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
IR+L +KY+P ++LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 16 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 68
>DICTYBASE|DDB_G0291868 [details] [associations]
symbol:rfc2 "replication factor C subunit 2"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0006298
"mismatch repair" evidence=ISS] [GO:0006272 "leading strand
elongation" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0291868 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000155_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000186 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 OMA:IQCLARI Pfam:PF08542 RefSeq:XP_629875.1
HSSP:P40339 ProteinModelPortal:Q54E21 SMR:Q54E21 STRING:Q54E21
EnsemblProtists:DDB0232231 GeneID:8628373 KEGG:ddi:DDB_G0291868
ProtClustDB:CLSZ2728742 Uniprot:Q54E21
Length = 338
Score = 128 (50.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 48/201 (23%), Positives = 78/201 (38%)
Query: 547 EVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP 603
E++ ++ + LD VR +K + LP+ R K+ ++DE + S A + +E
Sbjct: 88 ELNASDDRTLDVVRDKIKSFAMKKVTLPAG--RHKIIILDEVDSMTSGAQQALRRIMEIY 145
Query: 604 PQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLI 663
F F + IQSRC F ++ D I+ RLR++ E + D L I
Sbjct: 146 SGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIEKVPYTDDGLAAI 205
Query: 664 ALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKR 723
A+G +R A L I + V SD E
Sbjct: 206 IFTAEGDMRQALNNLQATHSGFGLINAENVTKVCDQPHPLIIKQIIALCAKSDFKEAYPF 265
Query: 724 ARELMDSGVDPMVLMSQLASL 744
++L D G + ++S L S+
Sbjct: 266 LKKLWDDGYSSIDIISALFSI 286
Score = 90 (36.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+PI +++G V L +IS+ P + GP GTGKTS+ + AL
Sbjct: 24 EKYRPILIKDIVGNEETVSRL-ESISKDGNLPNIIISGPPGTGKTSSILCLARAL 77
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 134 (52.2 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 34/132 (25%), Positives = 60/132 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 113 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 170
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D ++ARL + +E + D L+
Sbjct: 171 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEA 230
Query: 663 IALNADGSLRDA 674
+ A G +R A
Sbjct: 231 VIFTAQGDMRQA 242
Score = 84 (34.6 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 50 EKYRPVKLNEIVGNEDTVSRLEVFAKEGNV-PNIIIAGPPGTGKTTSILCLARAL 103
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 128 (50.1 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 30/148 (20%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D VR + ++ FK+ ++DE + A + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVT 206
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 207 LSSGDMRRALNILQSTNMAFGKVTEETV 234
Score = 89 (36.4 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
Identities = 22/54 (40%), Positives = 32/54 (59%)
Query: 458 IRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
IR+L +KY+P ++LI ++ ++ IS R+ P L GP GTGKTST
Sbjct: 16 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRL-PHLLLYGPPGTGKTST 68
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 134 (52.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 101 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 158
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D I+ARL + +E + D L+
Sbjct: 159 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEA 218
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 219 IIFTAQGDMRQA 230
Score = 83 (34.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 38 EKYRPVKLNEIVGNEDTVSRLEVFAREGNV-PNIIIAGPPGTGKTTSILCLARAL 91
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 112 (44.5 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 28/133 (21%), Positives = 61/133 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+ VR + + ++ FK+ ++DE + + A + +E+
Sbjct: 79 LELNASDDRGIGIVRGQILNFASTRTIFCDTFKLIILDEADAMTNDAQNALRRIIEKYTD 138
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
V F I + + ++QSRC ++ F + ++ RL KI E + + D +
Sbjct: 139 NVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRALLT 198
Query: 666 NADGSLRDAETML 678
A G +R +L
Sbjct: 199 LAKGDMRKVLNVL 211
Score = 104 (41.7 bits), Expect = 4.5e-09, Sum P(2) = 4.5e-09
Identities = 25/64 (39%), Positives = 36/64 (56%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+LI ++ ++ ISR ++ P LF GP GTGKTST I + A +
Sbjct: 15 EKYRPSGLDDLISHEEIISTITRFISRKQL-PHLLFYGPPGTGKTST--ILACARQLYSP 71
Query: 523 DQTK 526
Q K
Sbjct: 72 QQFK 75
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 132 (51.5 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 34/132 (25%), Positives = 60/132 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 98 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 155
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D +++RL + +E + D L+
Sbjct: 156 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEA 215
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 216 IIFTAQGDMRQA 227
Score = 83 (34.3 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 35 EKYRPVKLNEIVGNEDTVSRLEVFAREGNV-PNIIIAGPPGTGKTTSILCLARAL 88
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 132 (51.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 35/132 (26%), Positives = 59/132 (44%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 103 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 160
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D I+ RL + +E + D L+
Sbjct: 161 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEA 220
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 221 IIFTAQGDMRQA 232
Score = 83 (34.3 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 40 EKYRPVKLNEIVGNEDTVSRLEVFAREGNV-PNIIIAGPPGTGKTTSILCLARAL 93
>UNIPROTKB|O06363 [details] [associations]
symbol:Rv3644c "Possible DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003593 InterPro:IPR004622 SMART:SM00382 GO:GO:0005829
GenomeReviews:AL123456_GR GO:GO:0000166 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0008408 GO:GO:0003887 KO:K02341
TIGRFAMs:TIGR00678 EMBL:AL123456 PIR:E70563 RefSeq:NP_218161.1
RefSeq:YP_006517131.1 HSSP:P28631 ProteinModelPortal:O06363
SMR:O06363 PRIDE:O06363 EnsemblBacteria:EBMYCT00000000905
GeneID:13317252 GeneID:885553 KEGG:mtu:Rv3644c KEGG:mtv:RVBD_3644c
PATRIC:18156710 TubercuList:Rv3644c HOGENOM:HOG000192594
OMA:AFKLRRI ProtClustDB:PRK07940 Uniprot:O06363
Length = 401
Score = 168 (64.2 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 44/144 (30%), Positives = 77/144 (53%)
Query: 490 GRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKP-CGYCRECNDFISGKSRNFMEV 548
G + +L GP G+G++ A F+AAL C T +P CG CR C ++G + V
Sbjct: 37 GTMTHAWLLTGPPGSGRSVAALCFAAALQC--TSGGEPGCGRCRACTTTLAGTHADVRRV 94
Query: 549 --DGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQR 606
+G + G+D +R I++ ++A P+ +++ VI++ L A LK +EEPP
Sbjct: 95 IPEGLSI-GVDEMRAIVQ-IAARRPTTG-HWQIVVIEDADRLTEGAANALLKVVEEPPPS 151
Query: 607 VVFIFITTDID--NVPRSIQSRCQ 628
VF+ +D ++ +++SRC+
Sbjct: 152 TVFLLCAPSVDPEDIAVTLRSRCR 175
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 128 (50.1 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 29/148 (19%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D +R + ++ FK+ ++DE + A + +E+ +
Sbjct: 88 LELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 147
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 148 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVT 207
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 208 LSSGDMRRALNILQSTNMAFGKVTEETV 235
Score = 86 (35.3 bits), Expect = 5.9e-09, Sum P(2) = 5.9e-09
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 458 IRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
IR+L +KY+P ++LI ++ ++ I+ R+ P L GP GTGKTST
Sbjct: 17 IRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRL-PHLLLYGPPGTGKTST 69
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 131 (51.2 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 34/132 (25%), Positives = 59/132 (44%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 98 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 155
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D ++ RL + +E + D L+
Sbjct: 156 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEA 215
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 216 IIFTAQGDMRQA 227
Score = 82 (33.9 bits), Expect = 7.8e-09, Sum P(2) = 7.8e-09
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+P+ +E++G V L G + P + GP GTGKT++ + AL
Sbjct: 35 EKYRPLKLNEIVGNEDTVSRLEVFAREGNV-PNIIIAGPPGTGKTTSILCLARAL 88
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 163 (62.4 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 51/217 (23%), Positives = 100/217 (46%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D++ G ++ ++ + ++ P L GP GTGKTST I + A +
Sbjct: 49 EKYRPNTLDDVSGHKDILATINRFVEANQL-PHLLLYGPPGTGKTST--ILALARRIYGS 105
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL-SAGLPSASPRFKVFV 581
+ E N + R ++V K + I SA S+ FK+ +
Sbjct: 106 KNMRQM--VLELN---ASDDRG-IDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLII 159
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE + S +A + +E+ F I + ++ SRC ++ F+ +K+ DI
Sbjct: 160 LDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIR 219
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETML 678
+ ++ +E++ ++P+A+D + + G +R A +L
Sbjct: 220 VLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVL 256
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 137 (53.3 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 36/130 (27%), Positives = 61/130 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E++ ++ +G+D VR +K + + P R KV ++DE + S A + +E
Sbjct: 82 LELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQALRRTIEIYS 141
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F + IQSRC F+++ D I+ RL + A E + P+ L+ I
Sbjct: 142 NSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAII 201
Query: 665 LNADGSLRDA 674
ADG +R A
Sbjct: 202 FTADGDMRQA 211
Score = 70 (29.7 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P +++G V L I+R P + GP GTGKT++
Sbjct: 19 EKYRPSKVVDIVGNEDAVSRL-QVIARDGNMPNLILSGPPGTGKTTS 64
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 161 (61.7 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 63/240 (26%), Positives = 109/240 (45%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++ Q ++ L TI G + P LF GP GTGKTST + +A
Sbjct: 28 EKYRPKSLNDVSSQEHTIKVLTQTIKSGNL-PHMLFYGPPGTGKTST-------ILALAK 79
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH---LSAGLPSAS----- 574
+ P Y KSR +E++ ++++G+ VR +K+ L+ P+
Sbjct: 80 ELYGPNLY----------KSR-VLELNASDERGISIVREKIKNFARLTISNPTKEDLQNY 128
Query: 575 --PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
P +K+ ++DE + + A + +E F+ I I + I SRC K+ F
Sbjct: 129 PCPPYKIIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRF 188
Query: 633 NKIKDGDIVARLRKISAEENLNVEPD------ALDLIALNADGSLRDAETMLDQLSLLGK 686
+ + + RL+ I +ENL E + +L+ ++ G LR A T L + L +
Sbjct: 189 KLLNNENAQLRLKYIGQQENLRFESENNEHQVIQELLKISG-GDLRKAITYLQSAAKLSE 247
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 157 (60.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 60/226 (26%), Positives = 100/226 (44%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P D++ Q+ VV L + +GR P LF GP GTGKTS AAL
Sbjct: 18 TEKYRPKTLDDIAYQDEVVTMLKGAL-QGRDLPHLLFYGPPGTGKTS------AAL---- 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR----- 576
+CR+ R ++++ ++++G+ VR ++ S S R
Sbjct: 67 -------AFCRQLFPKNIFHDR-VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK 118
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
K+ ++DE + + A + +E+ + FI I + + + SRC K+ F +
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS 682
V RLR I E + D L + ++G LR A L L+
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 157 (60.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 60/226 (26%), Positives = 100/226 (44%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P D++ Q+ VV L + +GR P LF GP GTGKTS AAL
Sbjct: 18 TEKYRPKTLDDIAYQDEVVTMLKGAL-QGRDLPHLLFYGPPGTGKTS------AAL---- 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR----- 576
+CR+ R ++++ ++++G+ VR ++ S S R
Sbjct: 67 -------AFCRQLFPKNIFHDR-VLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLK 118
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
K+ ++DE + + A + +E+ + FI I + + + SRC K+ F +
Sbjct: 119 LKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLP 178
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS 682
V RLR I E + D L + ++G LR A L L+
Sbjct: 179 AEIQVQRLRTICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLA 224
>UNIPROTKB|Q9KQI3 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 KO:K02341
TIGRFAMs:TIGR00678 HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1
ProteinModelPortal:Q9KQI3 DNASU:2613394 GeneID:2613394
KEGG:vch:VC2015 PATRIC:20083062 OMA:AMNESAS ProtClustDB:PRK06090
Uniprot:Q9KQI3
Length = 324
Score = 155 (59.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 487 ISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546
++ G+I+ L Q G G S ++ + L C ++ Q++PCG+C C SG +F
Sbjct: 22 LAAGKISSATLIQASEGVGVESLVELMARTLMCTSS-QSEPCGFCHSCGLMQSGNHPDFH 80
Query: 547 EVDGTNKKGLDRVRYILKHLS--AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
V K G ++ ++ A S +++ VI+ + + A LK LEEP
Sbjct: 81 VVK-PEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPA 139
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQK 629
+FI +T+ I ++ +I SRCQ+
Sbjct: 140 PNCLFILVTSRIKHLLPTIVSRCQR 164
Score = 42 (19.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 749 IAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRL 784
+AG +T + A LERL L S +L L
Sbjct: 275 LAGRFTYSKLHVQTASLERLMEQLNQFSGLNTELLL 310
>TIGR_CMR|VC_2015 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR008921
InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 SUPFAM:SSF48019 KO:K02341 TIGRFAMs:TIGR00678
HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1 ProteinModelPortal:Q9KQI3
DNASU:2613394 GeneID:2613394 KEGG:vch:VC2015 PATRIC:20083062
OMA:AMNESAS ProtClustDB:PRK06090 Uniprot:Q9KQI3
Length = 324
Score = 155 (59.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 41/145 (28%), Positives = 71/145 (48%)
Query: 487 ISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546
++ G+I+ L Q G G S ++ + L C ++ Q++PCG+C C SG +F
Sbjct: 22 LAAGKISSATLIQASEGVGVESLVELMARTLMCTSS-QSEPCGFCHSCGLMQSGNHPDFH 80
Query: 547 EVDGTNKKGLDRVRYILKHLS--AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
V K G ++ ++ A S +++ VI+ + + A LK LEEP
Sbjct: 81 VVK-PEKIGKSITVEQIRQMNRIAQESSQLSGYRLIVIEPADAMNESSANALLKTLEEPA 139
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQK 629
+FI +T+ I ++ +I SRCQ+
Sbjct: 140 PNCLFILVTSRIKHLLPTIVSRCQR 164
Score = 42 (19.8 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 749 IAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRL 784
+AG +T + A LERL L S +L L
Sbjct: 275 LAGRFTYSKLHVQTASLERLMEQLNQFSGLNTELLL 310
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 141 (54.7 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 36/147 (24%), Positives = 72/147 (48%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E++ ++ +G+D VR +KH + P + K+ ++DE + + A + +E
Sbjct: 76 LELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYS 135
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F F + + +QSRC ++K+ D D++ RL +I E++ D L+ I
Sbjct: 136 NSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAII 195
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSS 691
A+G +R A L Q ++ G + ++
Sbjct: 196 FTAEGDMRQAINNL-QSTVAGHGLVNA 221
Score = 57 (25.1 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P +++G + L G + P + G G GKT++
Sbjct: 13 EKYRPQVLSDIVGNKETIDRLQQIAKDGNM-PHMIISGMPGIGKTTS 58
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 137 (53.3 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 33/130 (25%), Positives = 62/130 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
ME++ ++ +G+D VR +K + S P R K+ ++DE + A + +E
Sbjct: 77 MELNASDDRGIDVVRNKIKQFAQTKISLPPGRQKIIILDEADSMTPGAQQALRRTIEIYS 136
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F F + +QSRC +N++ D +++ARL +I E++ + L +
Sbjct: 137 NTTRFAFACNQSSKIIEPLQSRCAILRYNRLSDEEVLARLLEIIKMEDVKYNTEGLQALI 196
Query: 665 LNADGSLRDA 674
A+G +R A
Sbjct: 197 FTAEGDMRQA 206
Score = 60 (26.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P ++++G V+ L + G + P + G G GKT++
Sbjct: 13 EKYRPKKLEDIVGNEETVERLKLIVQDGNM-PNMIISGLPGIGKTTS 58
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 127 (49.8 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 34/141 (24%), Positives = 66/141 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E++ ++++G+D VR +K + P R K+ ++DE + + A + +E
Sbjct: 88 LELNASDERGIDVVRNRIKAFAQKKVILPPGRHKIIILDEADSMTAGAQQALRRTMEIYS 147
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
F + + IQSRC ++++ D ++ RL I E +N D L +
Sbjct: 148 NTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALI 207
Query: 665 LNADGSLRDAETMLDQLSLLG 685
+ A+G +R A L Q ++ G
Sbjct: 208 MTAEGDMRQAVNNL-QSTVAG 227
Score = 71 (30.1 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+KY+PI D+++G + L G + P + G G GKT++ + AL
Sbjct: 25 EKYRPIVLDDIVGNEETIDRLKVIAKEGNM-PHLVISGMPGIGKTTSILCLAHAL 78
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 148 (57.2 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 50/231 (21%), Positives = 99/231 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++I V+ ++ + +G + P L GP GTGKTST I +
Sbjct: 17 EKYRPNVLNDIISHEQVISTIKRFVQKGEL-PHLLLHGPPGTGKTST--ILAV------- 66
Query: 523 DQTKPCGYCRECNDFISGKSRNF-MEVDGTNKKGLDRVRYILKHLSAG----LPSASPRF 577
C + K +F +E++ ++ +G++ +R +K +
Sbjct: 67 -----------CKELYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTL 115
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+ ++DE + A + +E + V F + ++ + +IQSRC + F +K
Sbjct: 116 KLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKK 175
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
+ + I+ EN+N+ +D + G +R L +SL K +
Sbjct: 176 EYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNL 226
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 148 (57.2 bits), Expect = 5.9e-07, P = 5.9e-07
Identities = 50/231 (21%), Positives = 99/231 (42%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++I V+ ++ + +G + P L GP GTGKTST I +
Sbjct: 17 EKYRPNVLNDIISHEQVISTIKRFVQKGEL-PHLLLHGPPGTGKTST--ILAV------- 66
Query: 523 DQTKPCGYCRECNDFISGKSRNF-MEVDGTNKKGLDRVRYILKHLSAG----LPSASPRF 577
C + K +F +E++ ++ +G++ +R +K +
Sbjct: 67 -----------CKELYGDKRSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTL 115
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+ ++DE + A + +E + V F + ++ + +IQSRC + F +K
Sbjct: 116 KLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKK 175
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
+ + I+ EN+N+ +D + G +R L +SL K +
Sbjct: 176 EYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRILNCLQVVSLSHKNL 226
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 127 (49.8 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 30/132 (22%), Positives = 63/132 (47%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ ++++G+D VR+ +K + LP R K+ ++DE + A + +E
Sbjct: 77 LELNASDERGIDVVRHRIKTFAQTKVTLPEG--RHKIIILDEADSMTDGAQQALRRTMEM 134
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F + + IQSRC + K+ ++ R+++++ E +N + L+
Sbjct: 135 YTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEA 194
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 195 ILFTAQGDMRQA 206
Score = 66 (28.3 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P +++G +V+ L G + P + GP G GKT++
Sbjct: 14 EKYRPKVLADIVGNENIVERLKVIGHEGNV-PNIVLSGPPGCGKTTS 59
>TAIR|locus:2204710 [details] [associations]
symbol:RFC3 "replication factor C subunit 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0031348 "negative regulation of defense
response" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006312 "mitotic recombination"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0009560 "embryo sac egg cell
differentiation" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0016570 "histone modification" evidence=RCA]
[GO:0031048 "chromatin silencing by small RNA" evidence=RCA]
[GO:0048449 "floral organ formation" evidence=RCA] [GO:0051567
"histone H3-K9 methylation" evidence=RCA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0031348 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 EMBL:AC010704 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:ILACARQ HSSP:Q8U4J3
EMBL:AY065452 EMBL:AY117282 IPI:IPI00521569 PIR:A96804
RefSeq:NP_177871.1 UniGene:At.28476 UniGene:At.70634
ProteinModelPortal:Q9CAQ8 SMR:Q9CAQ8 STRING:Q9CAQ8 PaxDb:Q9CAQ8
PRIDE:Q9CAQ8 EnsemblPlants:AT1G77470.1 GeneID:844083
KEGG:ath:AT1G77470 TAIR:At1g77470 InParanoid:Q9CAQ8
PhylomeDB:Q9CAQ8 ProtClustDB:CLSN2682996 ArrayExpress:Q9CAQ8
Genevestigator:Q9CAQ8 Uniprot:Q9CAQ8
Length = 369
Score = 118 (46.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 33/152 (21%), Positives = 69/152 (45%)
Query: 541 KSRNF-MEVDGTNKKGLDRVRYILKHLSA--GLPSASPRFKVFVIDECHLLPSKTWLAFL 597
K RN +E++ ++ +G+D VR ++ ++ K+ ++DE + A
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159
Query: 598 KFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEP 657
+ +E+ + F I ++ + ++QSRC ++ F + + RL+ + E L V
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219
Query: 658 DALDLIALNADGSLRDAETMLDQLSLLGKRIT 689
L + ++G +R A +L + K IT
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEIT 251
Score = 76 (31.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTST 509
+KY+P D++ ++ ++ + ++ P L GP GTGKTST
Sbjct: 43 EKYRPQSLDDVAAHRDIIDTIDRLTNENKL-PHLLLYGPPGTGKTST 88
>UNIPROTKB|C9J8M3 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 GO:GO:0017111 EMBL:AC112907 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 OrthoDB:EOG4Q58PN IPI:IPI00792595
ProteinModelPortal:C9J8M3 SMR:C9J8M3 STRING:C9J8M3
Ensembl:ENST00000418288 ArrayExpress:C9J8M3 Bgee:C9J8M3
Uniprot:C9J8M3
Length = 214
Score = 135 (52.6 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 48/182 (26%), Positives = 80/182 (43%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KD 637
D
Sbjct: 203 SD 204
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 135 (52.6 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 546 MEVDGTNKKGLDRVRYILKHLS---AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEE 602
+E++ +N +G+D VR +K + LP R K+ ++DE + A + +E
Sbjct: 44 LELNASNDRGIDVVRNKIKMFAQQKVTLPKG--RHKIIILDEADSMTDGAQQALRRTMEI 101
Query: 603 PPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDL 662
+ F D + IQSRC + K+ D I+ARL + +E + D L+
Sbjct: 102 YSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEA 161
Query: 663 IALNADGSLRDA 674
I A G +R A
Sbjct: 162 IIFTAQGDMRQA 173
Score = 48 (22.0 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 494 PVYLFQGPRGTGKTSTAKIFSAAL 517
P + GP GTGKT++ + AL
Sbjct: 11 PNIIIAGPPGTGKTTSILCLARAL 34
>TIGR_CMR|CBU_0500 [details] [associations]
symbol:CBU_0500 "DNA polymerase III, delta prime subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR015199
Pfam:PF09115 GO:GO:0003677 GO:GO:0006260 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0009360
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 RefSeq:NP_819534.1
ProteinModelPortal:Q83E34 GeneID:1208384 KEGG:cbu:CBU_0500
PATRIC:17929691 HOGENOM:HOG000192592 OMA:EMSTSAQ
ProtClustDB:PRK05707 BioCyc:CBUR227377:GJ7S-497-MONOMER
Uniprot:Q83E34
Length = 319
Score = 138 (53.6 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 46/167 (27%), Positives = 74/167 (44%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
Q ++ +GR+ L G G GK AK + + C A D CG CR C F +G
Sbjct: 11 QEILTRYRQGRLPHALLLTGSPGLGKFDFAKAVAEFILCEAQDGGV-CGSCRGCQLFRAG 69
Query: 541 KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-PRFKVFVIDECHLLPSKTWLAFLKF 599
+F ++ K ++ I + ++A +A ++V +I + AFLK
Sbjct: 70 NHPDFFKLIPEEKSKNIKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAANAFLKT 129
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646
LEEP ++ I I+ + +I SRCQ+ F + V L+K
Sbjct: 130 LEEPCGQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQWLQK 176
>UNIPROTKB|P28631 [details] [associations]
symbol:holB "DNA polymerase III, delta prime subunit"
species:83333 "Escherichia coli K-12" [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA;IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IDA] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006261 GO:GO:0008408 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 PDB:1JR3 PDB:1XXH
PDB:1XXI PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1XXH PDBsum:1XXI PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH
PDBsum:3GLI EMBL:L04577 EMBL:L01483 PIR:S35523 RefSeq:NP_415617.1
RefSeq:YP_489367.1 PDB:1A5T PDBsum:1A5T ProteinModelPortal:P28631
SMR:P28631 DIP:DIP-9932N IntAct:P28631 MINT:MINT-1239429
EnsemblBacteria:EBESCT00000003941 EnsemblBacteria:EBESCT00000017474
GeneID:12934122 GeneID:945661 KEGG:ecj:Y75_p1069 KEGG:eco:b1099
PATRIC:32117439 EchoBASE:EB1463 EcoGene:EG11500
HOGENOM:HOG000192595 KO:K02341 OMA:CHSCHLM ProtClustDB:PRK07993
BioCyc:EcoCyc:EG11500-MONOMER BioCyc:ECOL316407:JW1085-MONOMER
EvolutionaryTrace:P28631 Genevestigator:P28631 TIGRFAMs:TIGR00678
Uniprot:P28631
Length = 334
Score = 137 (53.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 47/157 (29%), Positives = 68/157 (43%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
+ LV + GR L Q G G + S L C K CG+CR C +G
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAG 71
Query: 541 KSRNFMEV---DGTNKKGLDRVRYILKHLS--AGLPSASPRFKVFVIDECHLLPSKTWLA 595
++ + G N G+D VR + + L+ A L A KV + + LL A
Sbjct: 72 THPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGA----KVVWVTDAALLTDAAANA 127
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ-KYL 631
LK LEEPP F T + + + +++SRC+ YL
Sbjct: 128 LLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYL 164
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 128 (50.1 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 29/148 (19%), Positives = 69/148 (46%)
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+E++ ++ +G+D +R + ++ FK+ ++DE + A + +E+ +
Sbjct: 3 LELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 62
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
F I + + ++QSRC ++ F + +V RL + EE +++ D + +
Sbjct: 63 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVT 122
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLV 693
+ G +R A +L ++ ++T V
Sbjct: 123 LSSGDMRRALNILQSTNMAFGKVTEETV 150
>TIGR_CMR|SO_2612 [details] [associations]
symbol:SO_2612 "DNA polymerase III, delta prime subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 RefSeq:NP_718197.1
ProteinModelPortal:Q8EDX9 DNASU:1170314 GeneID:1170314
KEGG:son:SO_2612 PATRIC:23524851 HOGENOM:HOG000290789 OMA:SSGHLCA
ProtClustDB:CLSK906797 Uniprot:Q8EDX9
Length = 318
Score = 129 (50.5 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 39/124 (31%), Positives = 59/124 (47%)
Query: 512 IFSA-ALNCVATDQTKPCGYCRECNDFISGKSRNF--MEVDGTNKKGLDRVRYILKHLSA 568
+F A A C T CG+C+ C F +G +F +E DG K +D++R + LSA
Sbjct: 50 VFMARAAMCSQPTHTGGCGFCKSCQLFDAGNHPDFYQIEADGHQIK-VDQIRELCSRLSA 108
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
+ R V +I L S + A LK LEEP + + + + + +I SRCQ
Sbjct: 109 TAQQSGRR--VAIIHHSERLNSASANALLKTLEEPGKDTLLLLHSDTPARLMATISSRCQ 166
Query: 629 KYLF 632
+ F
Sbjct: 167 RLPF 170
>TIGR_CMR|SO_2308 [details] [associations]
symbol:SO_2308 "ATPase, AAA family" species:211586
"Shewanella oneidensis MR-1" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111
HOGENOM:HOG000017623 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 RefSeq:NP_717903.2
ProteinModelPortal:Q8EER1 GeneID:1170033 KEGG:son:SO_2308
PATRIC:23524239 Uniprot:Q8EER1
Length = 443
Score = 104 (41.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 38/137 (27%), Positives = 64/137 (46%)
Query: 555 GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITT 614
G+ +R ++ A S R +FV DE H AFL F+E+ V+FI TT
Sbjct: 86 GVKDIRGAIEQAQAIAQSRGQRTLLFV-DEVHRFNKSQQDAFLPFIEDGT--VIFIGATT 142
Query: 615 DIDN--VPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN-------LNVEPDALDLIAL 665
+ + + ++ SR + YL ++ +IV + + A+ LN+ D L+ +A
Sbjct: 143 ENPSFEINNALLSRARVYLIKRLSQDEIVHIITQALADTERGLGQRALNMPTDVLNKLAQ 202
Query: 666 NADGSLRDAETMLDQLS 682
DG R A +L+ +S
Sbjct: 203 LCDGDARKALNLLELMS 219
Score = 69 (29.3 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 459 RSLSQKYKPIFFDELIGQNIVV---QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
R L+ + +P E IGQ ++ Q L + GR + L+ GP GTGKT+ A++ +
Sbjct: 13 RPLAARMRPRTIAEYIGQAHLLGEGQPLRQALEAGRAHSMMLW-GPPGTGKTTLAELIA 70
>RGD|1593197 [details] [associations]
symbol:LOC367042 "similar to Activator 1 37 kDa subunit
(Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37
kDa subunit) (RFC37)" species:10116 "Rattus norvegicus" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1593197
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000074917
OrthoDB:EOG4Q58PN IPI:IPI00780490 Ensembl:ENSRNOT00000060753
Uniprot:D4ADU1
Length = 346
Score = 123 (48.4 bits), Expect = 0.00034, P = 0.00034
Identities = 52/200 (26%), Positives = 82/200 (41%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSLE-GADLPNLLFYGPPGTGKTST--ILAAARELFG- 97
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
P + + + R +V + + R S G P P FK ++
Sbjct: 98 ----PALFRLRVLELNASDERGIQKVKNFAQLTVSGSR------SDGKPC--PSFKTVIL 145
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E+ + F + + + SR K+ F + D
Sbjct: 146 DEADSMTSAA-RALRQTMEKESKTTRFCLFCNYVSRIIEPLTSRRSKFCFTPLSDKIQQK 204
Query: 643 RLRKISAEENLNVEPDALDL 662
RL I+ +EN+ + D + +
Sbjct: 205 RLLGIAEKENVKLGDDLVTI 224
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 123 (48.4 bits), Expect = 0.00036, P = 0.00036
Identities = 55/229 (24%), Positives = 97/229 (42%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA-----KIFSAALN 518
KY+P D++I + Q L +S + P LF GP G+GK + +I+ A+
Sbjct: 6 KYRPKSLDKVIVHEDIAQKLKKLVSE-QDCPHLLFYGPSGSGKKTLIMALLKQIYGASAE 64
Query: 519 CVATDQT--KPCGYCRECN-DFISGKSRNFMEVDGTNKKGLDR--VRYILKHLSAGLP-- 571
V + K R + + + S N +E+ ++ DR V+ I+K ++ P
Sbjct: 65 KVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNRPID 124
Query: 572 -SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+KV V++E L + + + +E+ I V +I+SRC
Sbjct: 125 TKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLNV 184
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLD 679
N +IV L ++ +E+L + IA ++ SLR A L+
Sbjct: 185 RINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLE 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.378 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1268 1096 0.00087 123 3 11 23 0.44 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 97
No. of states in DFA: 630 (67 KB)
Total size of DFA: 486 KB (2227 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 91.90u 0.22s 92.12t Elapsed: 00:00:04
Total cpu time: 91.92u 0.22s 92.14t Elapsed: 00:00:04
Start: Tue May 21 12:34:23 2013 End: Tue May 21 12:34:27 2013