BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000818
(1268 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255556667|ref|XP_002519367.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
gi|223541434|gb|EEF42984.1| replication factor C / DNA polymerase III gamma-tau subunit, putative
[Ricinus communis]
Length = 1270
Score = 1607 bits (4160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 892/1290 (69%), Positives = 1026/1290 (79%), Gaps = 68/1290 (5%)
Query: 17 IRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA--WKINNNNKQLVDEDNNVS 73
+ KAAR LRDPGTTSSWKSP+SSSRS AAA AA+A+ S WK +N + + N+ S
Sbjct: 11 VGKAARVLRDPGTTSSWKSPISSSRSAAAATLAAAAAASTSAWKQFDNENVIPNGHNSNS 70
Query: 74 INNGNV--NGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVDDS 131
+ NGKEKRVFL NWK QKSSSE SA+ARND D ED S SV +SVDDS
Sbjct: 71 HMDSYFRNNGKEKRVFLYNWKTQKSSSEKSAIARNDLD-------EDYESRSVQDSVDDS 123
Query: 132 LSDARNGGDSKSDTYLGENRASS-IFRCRDANLVSVATPAMKRAMAAKRKSKRHKTLSDS 190
LSDARN DSKSDTYLG++R+SS IFRCRDANLVS P+M+RAM K+KSK+ T D
Sbjct: 124 LSDARNAADSKSDTYLGDSRSSSMIFRCRDANLVS---PSMRRAMGIKKKSKKTDTHLDI 180
Query: 191 LTRYQQKQIILAR-----NSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPLLLKLK 245
L+RYQQK+I L R S ALGLGR++SVEQSDDTEDY NSED RK SGASPLL+KLK
Sbjct: 181 LSRYQQKEINLRRLLKSHPSIALGLGREDSVEQSDDTEDYSNSEDLRKISGASPLLIKLK 240
Query: 246 HKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASLNDNDD 305
HK WSHS SKLL+ RKEDSSY+YSTPALSTSSYNRY N NPST+GSWD TTAS+ND DD
Sbjct: 241 HKRWSHSPSKLLRISRKEDSSYTYSTPALSTSSYNRYCNHNPSTVGSWDGTTASVNDGDD 300
Query: 306 AMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHG 365
+DDHLDLPGRQGCGIPCYWSKRTP+HRGVCGSCCSPSLSDT++RKG+S+LCG Q+MYH
Sbjct: 301 EVDDHLDLPGRQGCGIPCYWSKRTPRHRGVCGSCCSPSLSDTIQRKGTSMLCGRQSMYHR 360
Query: 366 RRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSR 425
R SSSV NKRR++SRSAQG+LPLLAN+ DGR GSSIGTG SDDELSTNFGELDLEALSR
Sbjct: 361 RWHSSSVYNKRRISSRSAQGLLPLLANS-DGRGGSSIGTGNSDDELSTNFGELDLEALSR 419
Query: 426 LDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLV 484
LDGRRWSS CRSQDGLEIVALNG+ EEEG ENIRSLSQKYKP+FF E+IGQNIVVQSL+
Sbjct: 420 LDGRRWSS-CRSQDGLEIVALNGDGEEEGTPENIRSLSQKYKPLFFGEVIGQNIVVQSLI 478
Query: 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544
N ISRGRIAPVYLFQGPRGTGKTSTA+IF++ALNC++T++TKPCGYCR+C+DFISGK+R+
Sbjct: 479 NAISRGRIAPVYLFQGPRGTGKTSTARIFASALNCISTEETKPCGYCRDCSDFISGKARD 538
Query: 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
EVDGTNKKG+D+VR++LK +S P+ S R+KVF+IDECHLLPSK WLAFLKFLEEPP
Sbjct: 539 LWEVDGTNKKGIDKVRHLLKKVSQWPPTGSSRYKVFLIDECHLLPSKMWLAFLKFLEEPP 598
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
QRVVFIFITTD DNVPR++QSRCQKYLFNKIKDGDIVARLRK+S+EENL+VE DALDLIA
Sbjct: 599 QRVVFIFITTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKVSSEENLDVELDALDLIA 658
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
LNADGSLRDAETMLDQLSLLGKRIT+SLVNELVGVV +EKLLELLEL+MSSDTAETVKRA
Sbjct: 659 LNADGSLRDAETMLDQLSLLGKRITTSLVNELVGVVPDEKLLELLELSMSSDTAETVKRA 718
Query: 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAELERLKHALKL 774
R+L+ SGVDP+VLMSQLASLIMDIIAGT+ + GGRSLTEAELERLKHALKL
Sbjct: 719 RDLLHSGVDPLVLMSQLASLIMDIIAGTHNVADAKYSISLFGGRSLTEAELERLKHALKL 778
Query: 775 LSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVV 834
LSEAEKQLR+SS+R TWFTATLLQLGS+ SPDLTQS SSRRQSSRTTEEDPSS SRE V
Sbjct: 779 LSEAEKQLRVSSDRSTWFTATLLQLGSVPSPDLTQSSSSRRQSSRTTEEDPSSASREVTV 838
Query: 835 YKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAV 894
YK+ S QY+ + + SPASL + +NG S H GE G NS +PSHS D+ +
Sbjct: 839 YKQKSDAQYLSRRSSSPASLYKAINGKSSHRGEF-----GFNSKLRPSHS--IDSCMSSA 891
Query: 895 SQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYV 954
S++ +V + + RN+EKL IW +CI CHS TL+QLL HGKL S+SEVE L+ YV
Sbjct: 892 SRDDELVESMPLRYRNAEKLDRIWEKCIANCHSNTLRQLLHTHGKLFSLSEVEGALVVYV 951
Query: 955 AFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNELPKGLKKTE 1014
AFGD DIK+RAERF+SSITNSIE VLR NVEVRII +PDGE S++ +EL + K+ E
Sbjct: 952 AFGDEDIKARAERFMSSITNSIEMVLRCNVEVRIIFVPDGEDSMNCVNQSEL-QIQKQVE 1010
Query: 1015 TTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFK-GEDDH----- 1068
T AIE+E KA C N + YSD+ + +RK+SRGSFN+L+ K K G D+
Sbjct: 1011 ATMAIEQEKKANCVNPVNGYSDAQQE------SRKLSRGSFNDLDSKLKGGSGDYLKSLT 1064
Query: 1069 ---------SNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAP 1119
S + L + N+E K QE+PMQRIESIIREQRLETAWLQA EKG P
Sbjct: 1065 LLDSSFQSTSLSAELLPEANTESDGVKETGQELPMQRIESIIREQRLETAWLQAAEKGTP 1124
Query: 1120 GSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKD 1179
GSL L+PEKNQVLPQED +QN MES S LSSQ WE ELN ELK+LK+ E RVL KD
Sbjct: 1125 GSLSRLKPEKNQVLPQEDC-QQNQMESASSMALSSQHWEHELNDELKVLKMEERRVLHKD 1183
Query: 1180 ENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGKVKG 1239
+ GK+ ++YPI PSLLH S+F+GN +KE+ GYES S GGCSGLFCWN K H KV G
Sbjct: 1184 QIGKRADHYPISPSLLHGSNFVGNLNKESLGYESSSAGGGCSGLFCWNANKSH---KVNG 1240
Query: 1240 TPVRSR-KGGHFSLFVDCTKAKKSESRLRR 1268
TPVR R KGG FSLF +C K KK+E+R++R
Sbjct: 1241 TPVRYRGKGGRFSLFGECGKHKKTENRIKR 1270
>gi|359486198|ref|XP_002268959.2| PREDICTED: uncharacterized protein LOC100242129 [Vitis vinifera]
Length = 1274
Score = 1535 bits (3975), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1304 (64%), Positives = 990/1304 (75%), Gaps = 90/1304 (6%)
Query: 11 KKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVDED 69
KK+LTQIRKAAR LRDPGTTSSW+SPLS++RSL+ + A ++
Sbjct: 13 KKQLTQIRKAARVLRDPGTTSSWRSPLSTARSLSLSAATPPPPQPPPPPPRPPEE----- 67
Query: 70 NNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVD 129
+RVFL NW++ +++S N+DD+ VD GSS VD
Sbjct: 68 -------------SRRVFLYNWRSASQKAKSSVNGENEDDEDGVD-----GSS-----VD 104
Query: 130 DSLSDARNGGDSKSDTYLGENR-----ASSIFRCRDANLVSVATPAMKRAMAAKRKSKRH 184
DSLSD RNG DSKSDTY+G R AS IFRCRDANLV AM R K+K
Sbjct: 105 DSLSDWRNGVDSKSDTYIGGRRHRRHHASMIFRCRDANLV-----AMGRPSGIKKKKGSK 159
Query: 185 KTLSDSLTRYQQKQIILARNSAALG---------LGRDESVEQSDDTEDYCNSEDFRKYS 235
S +L R+QQ+Q L N+A G LGRD+SVEQSDDTE+Y NSEDFR+
Sbjct: 160 NVHSIALLRHQQQQQQL--NTARSGNSKRLLEGILGRDDSVEQSDDTEEYYNSEDFRRIC 217
Query: 236 GASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDA 295
ASPLL +L+ +NWS SSS+LL+ RK+DSSYSYSTPALSTSSYN Y NRNPST+ SWD
Sbjct: 218 EASPLLSRLRQRNWSRSSSRLLRSKRKDDSSYSYSTPALSTSSYNPYGNRNPSTVESWDG 277
Query: 296 TTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKR-TPKHRGVCGS--CCSPSLSDTLRRKG 352
TTASL+D DD +DD LDLPGRQGCGIPCYWS+R TP+HRG+CGS C SPSLSDT+RRKG
Sbjct: 278 TTASLHDGDDEVDDQLDLPGRQGCGIPCYWSRRSTPRHRGICGSGSCDSPSLSDTIRRKG 337
Query: 353 SSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
SS+LCGSQT+Y R S KRR S + QG+LPLL N+ DG GSS+GTGRSDDELS
Sbjct: 338 SSMLCGSQTIYPRRHGLPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELS 397
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQKYKPIFFD 471
TNFGELDLEALSRLDGRRWSSSCRSQ+ +E+VALNGE EEEG EN+RSLSQKY+P+FFD
Sbjct: 398 TNFGELDLEALSRLDGRRWSSSCRSQEAMELVALNGEREEEGSPENVRSLSQKYRPMFFD 457
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
ELIGQNIVVQSLVN ISRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC+A +TKPCG C
Sbjct: 458 ELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGIC 517
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
REC+DFISGKSR+F E+DGTNKKG+DR+RY+LK + G PS +KVFVIDECHLLPSK
Sbjct: 518 RECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSK 577
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
TWLAFLKFLEEPP +VVFIFIT D++NVPR++ SRCQKYLFNKIK+GDIVARLRKIS +E
Sbjct: 578 TWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDE 637
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+VE DAL+LIALNADGSLRDAETMLDQLSLLGKRIT+SLVN+LVGVVS+EKLLELLEL
Sbjct: 638 NLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLEL 697
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLT 761
AMSSDTAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY I GGRSLT
Sbjct: 698 AMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHIVDAQQSDSFFGGRSLT 757
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
EAE++RLKHALKLLSEAEKQLR+SSER TWFTATLLQLGS SPD T SGSSRRQSS+TT
Sbjct: 758 EAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGS-PSPDPTLSGSSRRQSSKTT 816
Query: 822 EEDPSSTSREA-VVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSK 880
E+DPSS SR+A +V+K+ +MP+ + SP S+ + NS H G++LS +DG N +K
Sbjct: 817 EDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAK 876
Query: 881 PSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKL 940
P HS+ +++GA A S + ++GN + N++KL +IW +CIERCHSKTL+QLL HGKL
Sbjct: 877 PVHSQFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKL 936
Query: 941 LSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHH 1000
+SISE E L+AYVAF D DIK RAERFLSSITNSIE V+R NVEV+IILLPDGE S++
Sbjct: 937 VSISEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKIILLPDGEISMNM 996
Query: 1001 ---GISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNE 1057
G+ + L GLK+ ETTAA+E E KA D+ DS Q++ KVSRGSFN+
Sbjct: 997 KAVGLPDTL--GLKQRETTAAVEGERKAFSMKGIDSDLDSSHQEL-----LKVSRGSFND 1049
Query: 1058 LEGKFK-GEDDHSNCSPL----------FADGNSEISSTKGRRQEIPMQRIESIIREQRL 1106
EGK + G D SNCSPL A+G+ E SSTK R QEIPM RI+SIIREQRL
Sbjct: 1050 SEGKLRGGSRDPSNCSPLLDRTFGPTDELAEGHIERSSTKERNQEIPMHRIDSIIREQRL 1109
Query: 1107 ETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELK 1166
ETAWLQ EKG P S+ L+PEKNQ+LPQ+ YRQN +ES+ S G+ SQ+WEDELN E+K
Sbjct: 1110 ETAWLQVAEKGTPRSMSRLKPEKNQILPQDGTYRQNQVESMNSVGVPSQKWEDELNHEIK 1169
Query: 1167 ILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCW 1226
+LK+N+ R L+KD GK+ ++YPI PS LHDSSF+ NF+KE+ GYESG+ + GC+ FCW
Sbjct: 1170 VLKINDRRALQKDPVGKRVDHYPISPSSLHDSSFVANFNKESMGYESGTGSVGCNSFFCW 1229
Query: 1227 NNTKPHKKGKVKG-TPVRSRK--GGHFSLFVDCTKAKKSESRLR 1267
NN KP K+GK+K P+ S K G F F +C K++K++SR +
Sbjct: 1230 NNDKPPKRGKIKQRPPLPSPKVGRGRFPCFGECGKSRKTDSRFK 1273
>gi|395399800|gb|AFN58239.1| trichome branching-like protein [Gossypium arboreum]
Length = 1223
Score = 1535 bits (3973), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 864/1298 (66%), Positives = 1002/1298 (77%), Gaps = 105/1298 (8%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+++R RL LKKELTQIRKAAR LRDPGTTSSWKSP++SSRS+AA + + S S S
Sbjct: 1 MSDLRMPDPSRLHLKKELTQIRKAARVLRDPGTTSSWKSPINSSRSVAA-LGSESLSRS- 58
Query: 56 WKINNNNKQL--------VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARND 107
N N L V+ + + I N N N K+KRVFL NW++QKSSS D
Sbjct: 59 ----NGNAHLDLSLLPFRVESNGHGRITNSNGNEKDKRVFLYNWRSQKSSSVNVDDDGED 114
Query: 108 DDDIDVDDDEDEGSSSVIESVDD-SLSDARNGGDSKSDTYLGENR-ASSIFRCRDANLVS 165
DDD D DD D+ SS + SVD+ SLSDAR GDSKSDT LGE+R AS +FRCRDANLVS
Sbjct: 115 DDDFDDGDDGDQSSSWIQGSVDENSLSDARKCGDSKSDTCLGESRSASMLFRCRDANLVS 174
Query: 166 VATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDY 225
+ TP+ KR + A + SK++ + D +RY+QK+ G+ R+ SV+QSDDTEDY
Sbjct: 175 LVTPSAKRMLGANKNSKKNGSNFDVFSRYEQKKN---------GVNRNSSVDQSDDTEDY 225
Query: 226 CNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNR 285
NSEDFRK SGASPLLLKLK KNW H SS+LLK RKEDSSYSYSTPALSTSSYN+Y N
Sbjct: 226 SNSEDFRKISGASPLLLKLKPKNWPHPSSRLLKADRKEDSSYSYSTPALSTSSYNKYFNH 285
Query: 286 NPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLS 345
NPS +GSWDATT SLND DD +DD LDLPG+QGCGIPCYW+KRTPKHR VCGSC SPSLS
Sbjct: 286 NPSVVGSWDATTTSLNDGDDDVDDPLDLPGQQGCGIPCYWTKRTPKHRVVCGSCYSPSLS 345
Query: 346 DTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTG 405
DTLRRKGSSILCGSQ+MYH RRS S+SNKR+ A RSAQGVLPLL+N+ DGR GSSIGT
Sbjct: 346 DTLRRKGSSILCGSQSMYHRHRRSLSLSNKRKNALRSAQGVLPLLSNSADGRGGSSIGTR 405
Query: 406 RSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQK 464
SDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVA GE EEEG ENI+SLSQK
Sbjct: 406 CSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVAHTGEAEEEGTPENIKSLSQK 465
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
YKP+FFDELIGQNIVVQSL+N +S+GRIAP YLFQGPRGTGKTSTA+IFSAALNC TD
Sbjct: 466 YKPMFFDELIGQNIVVQSLMNAVSKGRIAPFYLFQGPRGTGKTSTARIFSAALNCQTTDD 525
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDE 584
KPCG C EC +F SGK R F E D TN++G+DRVRY+LK LS GL S+S R+KVFVIDE
Sbjct: 526 DKPCGCCTECTEFTSGKRREFWEFDSTNRRGIDRVRYLLKSLSTGLASSSSRYKVFVIDE 585
Query: 585 CHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
CHLLPSK WLA LKFLE+PP R+VFIFITTD+DNVPR++QSRCQKYLFNKIKD DI+ARL
Sbjct: 586 CHLLPSKIWLALLKFLEDPPPRLVFIFITTDLDNVPRTVQSRCQKYLFNKIKDCDIMARL 645
Query: 645 RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL-VGVVSEE 703
RK+SA+ENL VE DALDLIALNADGSLRDAETMLDQLSLLGKRIT+SLVNEL VGVVS+E
Sbjct: 646 RKMSADENLEVESDALDLIALNADGSLRDAETMLDQLSLLGKRITASLVNELVVGVVSDE 705
Query: 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-------- 755
KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY I
Sbjct: 706 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYNIVDSKYSHS 765
Query: 756 --GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813
GGR++TEAE+ERLK ALKLLSEAEKQLR+SSER TWFTATLLQLGS+ SPDL+QSGSS
Sbjct: 766 FFGGRAVTEAEVERLKDALKLLSEAEKQLRVSSERSTWFTATLLQLGSLPSPDLSQSGSS 825
Query: 814 RRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRID 873
RRQS++T E+D STSREA YK SG Q MP + + ASL++ VNG S GE++SRID
Sbjct: 826 RRQSAKTIEDDLQSTSREAKAYKPKSGTQRMPWKSTT-ASLQKSVNGKSTRQGELVSRID 884
Query: 874 GHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQL 933
G+ S SK S R D A + + ++ GN I+ CRNSEKL +IWA+CI +CHSKTL+QL
Sbjct: 885 GYGSNSKTSRGRYLDGSATPAACDNSLNGNMILACRNSEKLDDIWAKCINKCHSKTLRQL 944
Query: 934 LQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPD 993
L HGKLLS++E E VLIAY+AF DGDIKSRAERFLSSITNS+E V+RRNVEV+IILL D
Sbjct: 945 LLAHGKLLSLAEDEGVLIAYLAFADGDIKSRAERFLSSITNSMEIVMRRNVEVQIILLAD 1004
Query: 994 GEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRG 1053
+H +RKVS+G
Sbjct: 1005 --VDLHQE---------------------------------------------SRKVSKG 1017
Query: 1054 SFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQA 1113
SF++LEGK +G D CS A+G +I S+K RQEIPMQRIESIIREQRLETAWLQA
Sbjct: 1018 SFSDLEGKLRGVQD---CS---AEGKDDIDSSKECRQEIPMQRIESIIREQRLETAWLQA 1071
Query: 1114 TEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNED 1173
EKG PGSL L+PEKNQVLPQE +YRQ+++ S+ S+ SSQQW++ELN+ELKILK N+
Sbjct: 1072 AEKGTPGSLTRLKPEKNQVLPQE-VYRQSNLGSMDSAAFSSQQWDEELNRELKILKTNDG 1130
Query: 1174 RVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHK 1233
+ ++KD+ G++ ++YP+ PSLLH+S+ SKEN GYESGS GGCSGLFCWNN+KP +
Sbjct: 1131 QEIQKDQLGRRADHYPMSPSLLHNST----LSKEN-GYESGSGTGGCSGLFCWNNSKPRR 1185
Query: 1234 K---GKVKGTPVRSRKGGHFSLFVDCTKAKKSESRLRR 1268
+ G+VKGTPVRS + FSLF +C K+KK +++ RR
Sbjct: 1186 RAKVGQVKGTPVRSCRTRRFSLFGECGKSKKIQNKCRR 1223
>gi|224070732|ref|XP_002303217.1| predicted protein [Populus trichocarpa]
gi|222840649|gb|EEE78196.1| predicted protein [Populus trichocarpa]
Length = 1241
Score = 1504 bits (3895), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 860/1304 (65%), Positives = 993/1304 (76%), Gaps = 105/1304 (8%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+EMR RL LKKELTQIRKAAR LRDPGTTSS A + AAAS S SA
Sbjct: 1 MSEMRFSDPSRLHLKKELTQIRKAARVLRDPGTTSS--------WKSARSAAAASTSASA 52
Query: 56 WKINNNNKQL------VDEDNNVSINNG-------NVNGKEKRVFLCNWKNQKSSSETSA 102
WK N + NN S + G N NG +K+VFL NWK+QK SSE SA
Sbjct: 53 WKHFENENAIQNGGTTASHSNNSSTHLGSHFKSVLNNNGSDKKVFLYNWKSQKYSSEKSA 112
Query: 103 VARNDDDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENRASS-IFRCRDA 161
+ RND DD + S SV ES+DDSLSDARN GDSKSDTYLGE R+ + IFR RDA
Sbjct: 113 LPRNDADD-------NCESCSVQESLDDSLSDARNVGDSKSDTYLGETRSPAMIFRRRDA 165
Query: 162 NLVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILAR-------NSAALGLGRDE 214
NLVS P+M+RAM K+K K+ T D L+RYQ+K++ L R +LGLGRD
Sbjct: 166 NLVS---PSMRRAMGVKKKGKKTNTRLDVLSRYQEKEMNLRRLLKGHPSMGLSLGLGRDA 222
Query: 215 SVEQSDDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPAL 274
VEQSDDTE+Y NSED RK SGASPLLLKLKHKNWSHS SK L+ RKEDSSY +STPAL
Sbjct: 223 IVEQSDDTEEYSNSEDLRKISGASPLLLKLKHKNWSHSPSKFLRTSRKEDSSYCHSTPAL 282
Query: 275 STSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRG 334
STSS N+Y NRNPST+GSWDATT S+ND DD DHLDLPGR GCGIPCYWSKRTP++RG
Sbjct: 283 STSSCNKYRNRNPSTVGSWDATTTSMNDGDDEDGDHLDLPGRHGCGIPCYWSKRTPRYRG 342
Query: 335 VCGS-CCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANN 393
VCGS CCSPSLSDTLRRKGSS+LCGSQ+MYH R RS S+SNKRR+ SR+ Q LPLLA++
Sbjct: 343 VCGSSCCSPSLSDTLRRKGSSMLCGSQSMYHRRLRSCSLSNKRRIGSRTGQAFLPLLADS 402
Query: 394 GDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEE 452
GDG GSSIGTG SDDELSTN+GELDLEAL RLDGRRWSS CR+QDGLEIVALNG+ E+E
Sbjct: 403 GDGIGGSSIGTGHSDDELSTNYGELDLEALCRLDGRRWSS-CRNQDGLEIVALNGDGEDE 461
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
G ++NIRSLSQKYKP FF ELIGQNIVVQSL+N ISRGRIA VYLFQGPRGTGKTS A+I
Sbjct: 462 GTVQNIRSLSQKYKPAFFSELIGQNIVVQSLINAISRGRIARVYLFQGPRGTGKTSAARI 521
Query: 513 FSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
F++ALNC++T++ KPCG CRECND SGK+R+ EVDGT+KKG+D+VRY+LK +S G P
Sbjct: 522 FASALNCMSTEEIKPCGCCRECNDSSSGKTRDLWEVDGTDKKGIDKVRYLLKKISRGPPL 581
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
S R+KVF+IDECHLLPSK WLAFLKFLEEPPQRVVFIF+TTD DNVPR++QSRCQKYLF
Sbjct: 582 GSSRYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLF 641
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL 692
+KIKD DIVARLRKIS EENL+VE +ALDLIALNADGSLRDAETMLDQLSLLGK+IT+SL
Sbjct: 642 SKIKDRDIVARLRKISNEENLDVELNALDLIALNADGSLRDAETMLDQLSLLGKKITTSL 701
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
VNELVG VS+EKLLELLELAMSS+TAETVKRAR+LMDSG+DPMVLMSQLASLIMDIIAGT
Sbjct: 702 VNELVGDVSDEKLLELLELAMSSETAETVKRARDLMDSGIDPMVLMSQLASLIMDIIAGT 761
Query: 753 YT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
Y IG ++LTEAELERLKHAL+LLSEAEKQLR+SS+R TWFTATLLQLGS
Sbjct: 762 YNVVYAKHGDSLIGTQNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGST 821
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS 862
S DLT S SSRRQSSRTTEEDPSS S+E+ VYK S QY P+ + SP+SL +NG+S
Sbjct: 822 PSMDLTLSSSSRRQSSRTTEEDPSSVSKESNVYKPNSDAQYFPRRSSSPSSLYRAINGHS 881
Query: 863 RHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCI 922
H GE + +KP RL D+ N + GN + +NS+KL +IW +CI
Sbjct: 882 SHQGE-------YEFNAKP--PRLMDS-------NDEMTGNKVFRYKNSDKLDDIWEKCI 925
Query: 923 ERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRR 982
E+CHS+TL+QLL HGKLLSISEV+ L YVAF D DIK+RAERFLSSITNSIE VLR
Sbjct: 926 EKCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDEDIKARAERFLSSITNSIEIVLRC 985
Query: 983 NVEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQI 1042
NVEVRI+L+ DG S+ + +EL +G ++TETT A ER GKA S A YSD +SQ+
Sbjct: 986 NVEVRIVLVSDGLDSLIYANQSELQEGHRQTETTLANERGGKANWSGAVVGYSDLESQE- 1044
Query: 1043 PVNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIR 1102
+ K+SRGSFN D N+ G +QE+PMQRIESIIR
Sbjct: 1045 ---ESAKLSRGSFN--------------------DANA------GEKQEMPMQRIESIIR 1075
Query: 1103 EQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELN 1162
EQRLETAWLQ EKG PGSL HL+PEKNQVLPQED Y+QN MES+ S+ LSSQ+WEDELN
Sbjct: 1076 EQRLETAWLQVAEKGTPGSLSHLKPEKNQVLPQEDTYQQNQMESIDSATLSSQKWEDELN 1135
Query: 1163 QELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSG 1222
ELK+LK+ + RVL+KD+ GK + YP+ PSLLH SS++ N SKE+ GYES S GGCSG
Sbjct: 1136 HELKVLKMQDQRVLRKDQIGKMVDYYPMSPSLLHGSSYVANGSKESLGYESSSAGGGCSG 1195
Query: 1223 LFCWNNTKPHKKGKVKGTPVRSR-KGGHFSLFVDCTKAKKSESR 1265
LFCWNN++ + + K K TPV R + G FSLF +C K KKSESR
Sbjct: 1196 LFCWNNSRSN-RAKAKATPVGPRGRSGRFSLFGECAKQKKSESR 1238
>gi|449431904|ref|XP_004133740.1| PREDICTED: uncharacterized protein LOC101212356 [Cucumis sativus]
gi|449478091|ref|XP_004155220.1| PREDICTED: uncharacterized protein LOC101227259 [Cucumis sativus]
Length = 1267
Score = 1479 bits (3829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 833/1302 (63%), Positives = 991/1302 (76%), Gaps = 72/1302 (5%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
MAE+R +L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+ AA A A +G A
Sbjct: 1 MAEVRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVMAATATAVVAGGA 60
Query: 56 WKINNNNKQLVDE--------DNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARND 107
N N + D V + N N N K+K+++L NWK+ KSSSE SA +N+
Sbjct: 61 SSSLNKNLECETRRYSGQSQLDAIVPLRNENRNPKDKKIYLYNWKSHKSSSEKSATLQNE 120
Query: 108 DDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVA 167
D D + D+++ S + S+D SLSDARNGGDSKSDTYLG+ +S +FRC DANLVS +
Sbjct: 121 DHDGNDDNNDGSYSVPGV-SLDGSLSDARNGGDSKSDTYLGDLYSSMVFRCGDANLVSYS 179
Query: 168 TPAMKRAMAAKRKSKRHKTLSDSLTRYQQK--------QIILARNSAALGLGRDESVEQS 219
P+ KR A K+KSK+H + D L+R+QQK +++ S ++ +D+S+EQS
Sbjct: 180 GPSAKRTSAFKKKSKKHCSHLDVLSRHQQKGPGPLMGRKLLEGHPSLSINFSQDDSIEQS 239
Query: 220 DDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSY 279
DDTEDY NSEDFR+YS ASPLLLKLKHK++ H SSK L+ RKEDSSYSYSTPALSTSSY
Sbjct: 240 DDTEDYSNSEDFRRYSAASPLLLKLKHKSF-HPSSKFLRNSRKEDSSYSYSTPALSTSSY 298
Query: 280 NRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSC 339
NRYVNRNPST+GSWD TT S+ND DD +DD LD PGRQGCGIPCYWSKRTPKHRG+CGSC
Sbjct: 299 NRYVNRNPSTVGSWDGTTTSINDADDEVDDRLDFPGRQGCGIPCYWSKRTPKHRGICGSC 358
Query: 340 CSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAG 399
CSPSLSDTLRRKGSSIL GSQ++Y RR S S+KRR AS SA+GVLPLL N+ DG G
Sbjct: 359 CSPSLSDTLRRKGSSILFGSQSIYS--RRKSINSSKRRFASGSARGVLPLLTNSADGGVG 416
Query: 400 SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENI 458
SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRS +GLEIVALNGE E G E+
Sbjct: 417 SSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSHEGLEIVALNGEVEGGGTPEST 476
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RS SQKYKP+FF+ELIGQNIVVQSL+N ISRGRIAPVYLFQGPRGTGKT+ A+IF+AALN
Sbjct: 477 RSFSQKYKPMFFNELIGQNIVVQSLINAISRGRIAPVYLFQGPRGTGKTAAARIFAAALN 536
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+A ++ KPCGYCREC DF++GK ++ +EVDGTNKKG+D++RY LK LS+G SA R+K
Sbjct: 537 CLAPEENKPCGYCRECTDFMAGKQKDLLEVDGTNKKGIDKIRYQLKLLSSGQSSAFFRYK 596
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+F++DECHLLPSK WLAFLK EEPPQRVVFIFITTD+D+VPR+IQSRCQKYLFNKIKD
Sbjct: 597 IFLVDECHLLPSKAWLAFLKLFEEPPQRVVFIFITTDLDSVPRTIQSRCQKYLFNKIKDC 656
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D+V RL++ISA+ENL+V+ DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVG
Sbjct: 657 DMVERLKRISADENLDVDLDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVG 716
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI--- 755
+VS+EKLLELL LAMSS+TAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY I
Sbjct: 717 IVSDEKLLELLALAMSSNTAETVKRARELMDSGVDPLVLMSQLASLIMDIIAGTYNIIDT 776
Query: 756 -------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
GGRSL+EAE+ERLKHALK LSEAEKQLR+SSER TWFTATLLQLGS+ SPD T
Sbjct: 777 KDGASIFGGRSLSEAEVERLKHALKFLSEAEKQLRVSSERSTWFTATLLQLGSISSPDFT 836
Query: 809 QSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEV 868
Q+GSSRRQS +TT++DPSSTS + YK+ S Q MP N SP SL NGN + ++
Sbjct: 837 QTGSSRRQSCKTTDDDPSSTSNGTIAYKQKSFAQLMPPNLGSPTSLCNLKNGNYNNQADM 896
Query: 869 LSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSK 928
+ +D SKP+H + + + S+ + N + +NSEKL IW CIERCHSK
Sbjct: 897 VPMVDNLIYNSKPTHKQFIEGKDSSFSREDVTLRNMVFRSKNSEKLNSIWVHCIERCHSK 956
Query: 929 TLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
TL+QLL HGKLLSISE E LIAYVAF D DIKSRAERFLSSITNS+E VLR NVEVRI
Sbjct: 957 TLRQLLYAHGKLLSISESEGTLIAYVAFEDVDIKSRAERFLSSITNSMEMVLRCNVEVRI 1016
Query: 989 ILLPDGEASIHHGISNEL-PKGLKKTETTAAIE-REGKALCSNANDNYSDSDSQQIPVNV 1046
ILLPDGEAS +S + P ++T A+E ++L +A S SDS Q+P
Sbjct: 1017 ILLPDGEASTAAKLSEGVEPDKERRTSNLNAMEGYSNRSLMLDATYQ-STSDSSQLPT-- 1073
Query: 1047 ARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRL 1106
E +H N DG ++ RRQEIPMQRIESIIREQRL
Sbjct: 1074 ------------------ESNHQN------DG------SRDRRQEIPMQRIESIIREQRL 1103
Query: 1107 ETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELK 1166
ETAWLQA EKG PGSL L+PEKNQVLPQ+ Y ++ M+ + S+ SS++WEDELN+ELK
Sbjct: 1104 ETAWLQAMEKGTPGSLSRLKPEKNQVLPQDGSYYKDQMDEMNSTEDSSRKWEDELNRELK 1163
Query: 1167 ILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCW 1226
+LK+ +D + +K++ G++ + Y I PS+LHD S +GN +K+N GYES S AGGCSGLFCW
Sbjct: 1164 VLKVGDDILAQKEQVGRRADRYAISPSILHDGSMVGNSNKDNLGYESSSAAGGCSGLFCW 1223
Query: 1227 NNTKPHKKGKVKGTPVRSRKGGHFSLFVDCTKAKKSESRLRR 1268
N++KPHK+ KV+ VRSR G FSLF +C K++ S SR RR
Sbjct: 1224 NSSKPHKRAKVRANHVRSRN-GRFSLFGECGKSRNSGSRFRR 1264
>gi|356520145|ref|XP_003528725.1| PREDICTED: uncharacterized protein LOC100814391 [Glycine max]
Length = 1237
Score = 1454 bits (3765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 818/1294 (63%), Positives = 959/1294 (74%), Gaps = 99/1294 (7%)
Query: 8 LQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLV 66
L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+AA W + +++L
Sbjct: 6 LHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAA-----------WNNDTASRRLT 54
Query: 67 DEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIE 126
+ N N K+KRVFL NWKN KSSSE +D + ++++D+GSSS++
Sbjct: 55 TISQ---LGPNNTNDKDKRVFLYNWKNYKSSSEKY-------NDEEEEEEDDDGSSSLLG 104
Query: 127 SVD-DSLSDARNGGDSKSDTYLG--------ENRASSIFRCRDANLVSVATPAMKRAMAA 177
D DSLSDARNG DSKSDTYL SSIFRC DANLVS +R +
Sbjct: 105 DRDRDSLSDARNGCDSKSDTYLAAAVGGGGGGGTRSSIFRCGDANLVS------RRTVPV 158
Query: 178 KRKSKRHKTLSDSLTRYQQ----KQIILARNSAALG-----LGRDESVEQSDD-TEDYCN 227
K+KSK++ D L +YQ K+ + + + G RD+SVE SDD TEDY N
Sbjct: 159 KKKSKKNNPHFDFLAKYQHHRPGKKFVSSSKALLEGHPSPFFNRDDSVEHSDDDTEDYTN 218
Query: 228 SEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNP 287
SE R SG SPLLLKL+ KNWS SSSK L+ RKEDSSYSYSTPALSTSSYNRY +R P
Sbjct: 219 SEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYP 278
Query: 288 STIGSWDATTASLNDNDDAMDD--HLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLS 345
ST+GSWD TT S+ND D + HLDLPGRQGCGIPCYWSKRTPKHRG+CGSC SPSLS
Sbjct: 279 STLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGSCYSPSLS 338
Query: 346 DTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTG 405
DTLRRKGSS+LCGSQT+Y RRS+S S+KRR++ RSA+GV+PLL N+GD R GSS+GTG
Sbjct: 339 DTLRRKGSSMLCGSQTIYPRHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGSSVGTG 398
Query: 406 RSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQK 464
RSDDELSTNFGELDLE LSRLDGRRWSSSCRSQ+GLEIVALNGE E +G EN RS SQK
Sbjct: 399 RSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYDGTPENNRSFSQK 458
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
Y+P+FF ELIGQN+VVQSL++ +SRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC + ++
Sbjct: 459 YRPMFFGELIGQNVVVQSLISAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPNE 518
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDE 584
+KPCGYCREC DFISGKS + +EVDGTNK+G+D+ RY+LK LS G SASP++ +FVIDE
Sbjct: 519 SKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTIFVIDE 578
Query: 585 CHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
CHLLPSKTWL FLKFLEEPPQRVVFIFIT+D+DNVPR+IQSRCQKYLFNKIKDGDIV RL
Sbjct: 579 CHLLPSKTWLGFLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRL 638
Query: 645 RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEK 704
RKIS +ENL+VE DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVGVVS+EK
Sbjct: 639 RKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEK 698
Query: 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI--------- 755
LLELLELAMSSDT ETVKRARELMDSGVDPMVLMSQLA LIMDIIAG+Y +
Sbjct: 699 LLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTKPDDSF 758
Query: 756 -GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSR 814
GGRSL ++ELERLK+ALKLLSEAEKQLR SSER TWFTATLLQLGS SPDLTQS SSR
Sbjct: 759 FGGRSLNQSELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQSSSSR 818
Query: 815 RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDG 874
RQS +TTE+DPSS SR+ S PQY+P+ + AS ++ VN +S H ++ S+I+G
Sbjct: 819 RQSCKTTEDDPSSVSRDVTSCMHKSDPQYVPRKSAYTASQQKAVNESSHHQKDISSKIEG 878
Query: 875 HNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLL 934
SKPS+ + D G+ VS + +V N + C +S KL +IW CIERCHSKTL+QLL
Sbjct: 879 LK--SKPSNGPVIDDGSTVVSSDDLMVENRMFRCIDSGKLCDIWVHCIERCHSKTLRQLL 936
Query: 935 QVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDG 994
HGKL+S+ EVE VL+AYVAFGD DIK R ERFL SITNS+E VLRRNVEVRII LPDG
Sbjct: 937 HNHGKLVSVCEVEGVLVAYVAFGDADIKVRVERFLRSITNSMEMVLRRNVEVRIIHLPDG 996
Query: 995 EASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGS 1054
E + GLK+ E+T A E+E + N ++YS S
Sbjct: 997 EGENQVNL-----LGLKQAESTVAGEKEERKGHMNRTESYS------------------S 1033
Query: 1055 FNE-LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQA 1113
F L+G + + S+ + A+GN K RRQ+ PMQRIESIIREQRLETAWLQA
Sbjct: 1034 FPPLLDGNLQSTNASSD---ILAEGN----GVKERRQDNPMQRIESIIREQRLETAWLQA 1086
Query: 1114 TEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSS-QQWEDELNQELKILKLNE 1172
EKG+PGSL LRPE+NQVL Q + + MES+ S+ S Q WEDELN E+K+L L
Sbjct: 1087 VEKGSPGSLSRLRPEENQVLLQNAV---DPMESMDSTRFPSHQHWEDELNNEVKVLSLKN 1143
Query: 1173 DRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPH 1232
RV +KD+ G+K + YP+ PSLLHD+S K+N GYESGS AGGC G CWN +KP
Sbjct: 1144 GRVPQKDQIGRKADRYPMSPSLLHDNSLATISGKDNLGYESGSGAGGC-GFLCWNKSKPR 1202
Query: 1233 KKGKVK-GTPVRSRKGGHFSLFVDCTKAKKSESR 1265
+ KVK GTPVR+R+ F+LF DCTK KK E R
Sbjct: 1203 RVVKVKGGTPVRARRAATFTLFGDCTKPKKRERR 1236
>gi|356564432|ref|XP_003550458.1| PREDICTED: uncharacterized protein LOC100791561 [Glycine max]
Length = 1236
Score = 1422 bits (3680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 819/1295 (63%), Positives = 957/1295 (73%), Gaps = 98/1295 (7%)
Query: 1 MAEMR-GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKI 58
M+EMR L LKKELTQIRKAAR LRDPGTTSSWKSPLSSSRS+AA W
Sbjct: 1 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAA-----------WNK 49
Query: 59 NNNNKQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDED 118
+ +++ + N K+KRVFL NWKN KSSSE +D+ + +DD+D
Sbjct: 50 DTASRRF-------TTPNDKDKDKDKRVFLYNWKNYKSSSEKY------NDEEEEEDDDD 96
Query: 119 EGSSSVIESVD-DSLSDARNGGDSKSDTYLGENRA-----SSIFRCRDANLVSVATPAMK 172
+GSSS++ D DSLSDARNG DSKSDTYL SSIFRC DANLVS +
Sbjct: 97 DGSSSLLGDRDRDSLSDARNGCDSKSDTYLAAADGGGGARSSIFRCGDANLVS------R 150
Query: 173 RAMAAKRKSKRHKTLSDSLTRYQQKQIILARNSAALGL---------GRDESVEQSDD-T 222
RA+ K+KSK++ D L +YQ + + S++ L RD+SVE SDD T
Sbjct: 151 RAVPVKKKSKKNNPHFDFLAKYQHHRPGRKKLSSSKALLEGHPSPFFNRDDSVEHSDDDT 210
Query: 223 EDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRY 282
EDY NSE R SG SPLLLKL+ KNWS SSSK L+ RKEDSSYSYSTPALSTSSYNRY
Sbjct: 211 EDYTNSEGVRPISGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRY 270
Query: 283 VNRNPSTIGSWDATTASLNDNDDAMDD--HLDLPGRQGCGIPCYWSKRTPKHRGVCGSCC 340
+R PST+GSWD TT S+ND D + HLDLPGRQGCGIPCYWSKRTPKHR +CGSC
Sbjct: 271 GHRYPSTLGSWDGTTTSVNDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRRMCGSCY 330
Query: 341 SPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGS 400
SPSLSDTLRRKGSS+LCGSQ++Y RRS+S S+KRR++ RSA+GV+PLL N+GD R GS
Sbjct: 331 SPSLSDTLRRKGSSMLCGSQSIYPTHRRSASASHKRRLSLRSARGVIPLLTNSGDVREGS 390
Query: 401 SIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIR 459
S+GTG SDDELSTNFGELDLE LSRLDGRRWSSSCRSQ+GLEIVALNGE E E EN R
Sbjct: 391 SVGTGWSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEYESTPENNR 450
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
S SQKY+P+FF EL GQNIVVQSL+N +SRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC
Sbjct: 451 SFSQKYRPMFFGELFGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNC 510
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ D++KPCGYCREC DFISGKS + +EVDGTNK+G+D+ RY+LK LS+G SASP++ +
Sbjct: 511 ASPDESKPCGYCRECVDFISGKSSDLLEVDGTNKRGIDKARYLLKRLSSGSSSASPQYTI 570
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
FVIDECHLLPSKTWL FLKFLEEPP RVVFIFIT+D+DNVPR+IQSRCQKYLFNKIKDGD
Sbjct: 571 FVIDECHLLPSKTWLGFLKFLEEPPLRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGD 630
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
IV RLRKIS +ENL+VE DALDLIA+NADGSLRDAETML+QLSLLGKRIT+SLVNELVGV
Sbjct: 631 IVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGV 690
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI---- 755
VS+EKLLELLELAMSSDT ETVKRARELMDSGVDPMVLMSQLA LIMDIIAG+Y +
Sbjct: 691 VSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYAVIDTK 750
Query: 756 ------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQ 809
GGRSL E+ELERLK+ALKLLSEAEKQLR SSER TWFTATLLQLGS SPDLTQ
Sbjct: 751 PDDSFFGGRSLNESELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSTPSPDLTQ 810
Query: 810 SGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVL 869
S SSRRQS +TTE+DPSS SR+ S PQY+PQ + AS ++ VN NS H ++
Sbjct: 811 SSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYVPQKSAYTASQQKAVNDNSHHQKDIS 870
Query: 870 SRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKT 929
S+I+G + SKPS S + D G+ VS + +VGNT+ C +S KL IW CIERCHSKT
Sbjct: 871 SKIEGFSLKSKPSSSPVIDDGSTVVSSDDLMVGNTMFRCIDSGKLCYIWVHCIERCHSKT 930
Query: 930 LKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRII 989
L+QLL HGKL+S+ EVE VL+AYVAF D DIK R ERFL SITNS+E VLRRNVEVRII
Sbjct: 931 LRQLLHNHGKLVSVCEVEGVLVAYVAFEDADIKVRVERFLRSITNSMEMVLRRNVEVRII 990
Query: 990 LLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARK 1049
LP+GE LP GLK+ E+T A E+E + N ++YS
Sbjct: 991 HLPNGEGENQ----VNLP-GLKQAESTVAGEKEQRKSHMNGTESYS-------------- 1031
Query: 1050 VSRGSFNE-LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLET 1108
SF L+G + S+ + A+GN + RRQ+ PMQRIESIIREQRLET
Sbjct: 1032 ----SFPPLLDGNLQSTAASSD---ILAEGN----GVRERRQDNPMQRIESIIREQRLET 1080
Query: 1109 AWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSS-QQWEDELNQELKI 1167
AWLQA EKG+PGSL LRPEKNQVLPQ + + +ES+ S+ S Q WED+ N E+K+
Sbjct: 1081 AWLQAVEKGSPGSLSRLRPEKNQVLPQNGV---DPIESMDSTRFPSHQHWEDDPNDEVKV 1137
Query: 1168 LKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWN 1227
L L R+ +KD+ G+K + +P+ PSLLHD+S K+N GYESGS AGGC G CWN
Sbjct: 1138 LSLKNGRIPQKDQIGRKTDRFPMSPSLLHDNSLATISGKDNLGYESGSGAGGC-GFLCWN 1196
Query: 1228 NTKPHKKGKVK-GTPVRSRKGGHFSLFVDCTKAKK 1261
+KP + KVK GTPVR+ + F+LF DCTK K
Sbjct: 1197 KSKPRRVIKVKGGTPVRAGRAATFTLFGDCTKPNK 1231
>gi|224129822|ref|XP_002328811.1| predicted protein [Populus trichocarpa]
gi|222839109|gb|EEE77460.1| predicted protein [Populus trichocarpa]
Length = 1197
Score = 1419 bits (3674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 836/1306 (64%), Positives = 957/1306 (73%), Gaps = 147/1306 (11%)
Query: 1 MAEMR----GRLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSA 55
M+EMR RL LKKELTQIRKAAR LRDPGT+SSWKSPL+S+RS A AAA+++ ++
Sbjct: 1 MSEMRFSDPSRLHLKKELTQIRKAARVLRDPGTSSSWKSPLNSARSAATMAAAAASTSAS 60
Query: 56 -WKINNNNKQLVDEDN-----------NVSINNGNVNGKEKRVFLCNWKNQKSSSETSAV 103
WK + + + +GN +GK+KRVFL NWK+QKSSSE SA+
Sbjct: 61 AWKHFETENAIQNGGGGGSHNNNSAHLDSHFKSGNNHGKDKRVFLYNWKSQKSSSEKSAL 120
Query: 104 ARNDDDDIDVDDDEDEGSSSVIESVDDSLSDARNGGDSKSDTYLGENR-ASSIFRCRDAN 162
ARND DD D S S+ S+DDSLSDARN GDSKSDTYLGE R A+ IFRCRDAN
Sbjct: 121 ARNDADD-------DYESCSIQGSLDDSLSDARNAGDSKSDTYLGETRSAAMIFRCRDAN 173
Query: 163 LVSVATPAMKRAMAAKRKSKRHKTLSDSLTRYQQKQIILAR-------NSAALGLGRDES 215
LVS P+M+RAM K+KSK+ D L+RYQQK++ L R LGLGRD+
Sbjct: 174 LVS---PSMRRAMGIKKKSKKTNARFDVLSRYQQKEMNLRRLLKGHPSMGLGLGLGRDDV 230
Query: 216 VEQSDDTEDYCNSEDFRKYSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALS 275
VEQSDDTE+Y NSE RK SGASPLLLKLKHKN SHS SKLL+ RKEDSSYS+STPALS
Sbjct: 231 VEQSDDTEEYSNSEYLRKISGASPLLLKLKHKNRSHSPSKLLRTTRKEDSSYSHSTPALS 290
Query: 276 TSSYNRYVNRNPSTIGSWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGV 335
SSY++Y RNPS +GSWDATT S+ND DD DDHLDLPGRQGCGIPCYWSKRTP++RGV
Sbjct: 291 ASSYDKYRKRNPSNVGSWDATTTSVNDGDDEDDDHLDLPGRQGCGIPCYWSKRTPRYRGV 350
Query: 336 CGS-CCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNG 394
CGS CCSPSLSDTLRRKGSS+ CGSQ +YH RRRS S+SNKRR+ SR+ +LPLL N+G
Sbjct: 351 CGSSCCSPSLSDTLRRKGSSMFCGSQPLYHRRRRSWSISNKRRIGSRTGHALLPLLTNSG 410
Query: 395 DGRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEG 453
DG GSSIGTG SDDELSTN+GELDLEALSRLDGRRWSS CRSQDGLEIVALNG+ EEEG
Sbjct: 411 DGIGGSSIGTGLSDDELSTNYGELDLEALSRLDGRRWSS-CRSQDGLEIVALNGDGEEEG 469
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
ENI SLSQKYKP+FF ELIGQNIVVQSL N ISRGRIAPVYLFQGPRG GKTS A+IF
Sbjct: 470 TPENIGSLSQKYKPVFFSELIGQNIVVQSLTNAISRGRIAPVYLFQGPRGIGKTSAARIF 529
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
++ALNC + ++ KPCGYCREC+D ISGK+R+ EVDGT+KKG+D+VRY+LK +S P
Sbjct: 530 ASALNCTSAEEIKPCGYCRECSDSISGKTRDLWEVDGTDKKGIDKVRYLLKKISHRPPLG 589
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S +KVF+IDECHLLPSK WLAFLKFLEEPPQRVVFIF+TTD DNVPR++QSRCQKYLFN
Sbjct: 590 SSHYKVFLIDECHLLPSKMWLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFN 649
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
KIKDGDIVARLRKIS EENL+VE ALDLI+LNADGSLRDAETMLDQLSLLGK+IT+SLV
Sbjct: 650 KIKDGDIVARLRKISKEENLDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLV 709
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
NELVGVVS+EKLLELLELAMSSDTAETVKRAR+LMDSGVDPMVLMSQLASLIMDIIAGTY
Sbjct: 710 NELVGVVSDEKLLELLELAMSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTY 769
Query: 754 TI----------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+ G +LTEAELERLKHAL+LLSEAEKQLR+SS+R TWFTATLLQLGS
Sbjct: 770 NVVDAKHGDSLFGTHNLTEAELERLKHALRLLSEAEKQLRISSDRSTWFTATLLQLGSTP 829
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
S DLTQS SSRRQSSRTTEEDPSS S+E+ VYK S QY+ Q + SP SL +NG S
Sbjct: 830 SMDLTQSSSSRRQSSRTTEEDPSSASKESKVYKTKSNAQYLTQRSSSPPSLYREINGCSS 889
Query: 864 HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIE 923
GE G N +K SRL ++ + S + I GN I +NSEKL +IW +CIE
Sbjct: 890 QQGEF-----GFN--AKAPRSRLVNSRTSSTSLDDEITGNMIFRYKNSEKLDDIWEKCIE 942
Query: 924 RCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRN 983
+CHS+TL+QLL HGKLLSISEV+ L YVAF D DIK+RAERFLSSITNSIE VLRRN
Sbjct: 943 KCHSQTLRQLLHAHGKLLSISEVDGALAVYVAFEDQDIKARAERFLSSITNSIEIVLRRN 1002
Query: 984 VEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIP 1043
VEVRIIL+ D E P
Sbjct: 1003 VEVRIILITD----------EEFP------------------------------------ 1016
Query: 1044 VNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIRE 1103
K+S+GSFN+ + GE G+R E+PMQRIESIIRE
Sbjct: 1017 -----KLSKGSFNDANAENNGE---------------------GKR-EMPMQRIESIIRE 1049
Query: 1104 QRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQ 1163
QRLETAWLQA EKG PGSL L+PEKNQVLPQ+D Y+QN ELN
Sbjct: 1050 QRLETAWLQAAEKGTPGSLSCLKPEKNQVLPQDDTYQQN-----------------ELNH 1092
Query: 1164 ELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGL 1223
ELK+LK+ RV KD+ G ++YPI PSLLH SS++ N SKE+ GYES S GGCSGL
Sbjct: 1093 ELKVLKMQNRRVHHKDQIGHMVDHYPISPSLLHGSSYVVNGSKESLGYESSSAGGGCSGL 1152
Query: 1224 FCWNNTKPHKKGKVKGTPVRSR-KGGHFSLFVDCTKAKKSESRLRR 1268
CWN ++ H + KVK TPV+ R + G FSLF +C K KK +SR+ R
Sbjct: 1153 LCWNTSRSH-RAKVKETPVQPRGRSGRFSLFGECAKQKKPDSRITR 1197
>gi|297814494|ref|XP_002875130.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
gi|297320968|gb|EFH51389.1| hypothetical protein ARALYDRAFT_484163 [Arabidopsis lyrata subsp.
lyrata]
Length = 1222
Score = 1345 bits (3481), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1289 (58%), Positives = 934/1289 (72%), Gaps = 104/1289 (8%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQL 65
+L LKKELTQIRKA R LRDPGTTSSWKSPL SSRS+A AS +G +
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVAVFETPASRNGGS---------- 60
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
+ + GKEK+VFL NWK QKSSSE S +A+N ++ + ++++ +
Sbjct: 61 -SSQFPIRGESSTNRGKEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEEDASSWTQAS 119
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSI-FRCRDANLVSVATPAMKRAMAAKRKSKRH 184
+ DD +SDARNGGDSKSD+YLG+ +++S+ FRCRD NL S M+++ K K
Sbjct: 120 VNDDDDVSDARNGGDSKSDSYLGDIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSK 179
Query: 185 KTLS----DSLTRYQQKQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSGASP 239
+ +S D L++YQ ++ I+ARN A SDDTE+ NSEDFRK +GASP
Sbjct: 180 QKISSSRLDFLSKYQPREDIVARNCNA----------GSDDTEEELSNSEDFRKVTGASP 229
Query: 240 LLLKLKHKNWSHSSSKLLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATT 297
LL KLKHKNWS SSSKLL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD TT
Sbjct: 230 LLKKLKHKNWSRSSSKLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTT 289
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
SLND DD +DD+LDLPGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSSILC
Sbjct: 290 TSLNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILC 349
Query: 358 GSQTMYHGRRRSSSVSN-KRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFG 416
GSQ++Y R SS K+++A RSAQGVLPLL GDGR GSS+GTG SDDELSTN+G
Sbjct: 350 GSQSVYRRHNRHSSGGYIKQKIACRSAQGVLPLLTYGGDGRGGSSLGTGLSDDELSTNYG 409
Query: 417 ELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENIRSLSQKYKPIFFDELIG 475
ELDLEA SRLDGRRWS+S RSQDGLE VAL+GE E+G E IRS SQKY+P+FF+ELIG
Sbjct: 410 ELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEGEDGSTPETIRSFSQKYRPMFFEELIG 469
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
Q+IVVQSL+N + R RIAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC+ECN
Sbjct: 470 QSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECN 529
Query: 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA 595
+F+SGKS++F E+DG NKKG D+VRY+LK+L LP S +KVFVIDECHLLP KTWL+
Sbjct: 530 EFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPLKTWLS 589
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV 655
FLKFLE P Q+VVFIFITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++ENL+V
Sbjct: 590 FLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDV 649
Query: 656 EPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSS 715
+ ALDLIA+NADGSLRDAETML+QLSLLGKRIT++LVNELVGVVS+EKLLELLELA+SS
Sbjct: 650 DLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSS 709
Query: 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAEL 765
DTAETVKRAREL+D G DP+VLMSQLASLIMDIIAGTY + GR+LTEA++
Sbjct: 710 DTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFLDGRNLTEADM 769
Query: 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDP 825
E LKHALKLLSEAEKQLR+S++R TWFTATLLQLGSM SP T +GSSRRQSSR T++DP
Sbjct: 770 EGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDP 829
Query: 826 SSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSR 885
SS SRE + YK+ G + + A SPAS+ + NGN H + LSR+ +N Y S S+
Sbjct: 830 SSISREVMAYKQRIGGLHFSKLA-SPASVIKR-NGNHSHEAKALSRVIDNNCYKSSSSSQ 887
Query: 886 LKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISE 945
+ ++ A S ++ ++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+SISE
Sbjct: 888 VIESEASIASHENSVASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISE 947
Query: 946 VERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNE 1005
VE +L+AY+AFG+ DIK RAERFLSSITNSIE VLRR+VEVRIILLP+ E I
Sbjct: 948 VEGILVAYIAFGETDIKLRAERFLSSITNSIEMVLRRSVEVRIILLPETELLI------- 1000
Query: 1006 LPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKGE 1065
+P +K E T N S G N + G
Sbjct: 1001 VPHQTRKPEMT----------------NKS-----------------GHLNNIAG----- 1022
Query: 1066 DDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGSLGHL 1125
+ A+ + E+ S++ R ++PMQRIESIIREQRLETAWLQ +K PGS+ +
Sbjct: 1023 --------INAESDVEVGSSEESRSKLPMQRIESIIREQRLETAWLQTADKDTPGSIIRV 1074
Query: 1126 RPEKNQVLPQEDIYRQNHMESLL-SSGLSSQQWEDELNQELKILKLNEDRVLKKDENGKK 1184
+PE+NQ+LPQED YRQ ++ S + SSGL++ W DELN E+K+LK+ ++ L+++ G +
Sbjct: 1075 KPERNQILPQEDTYRQPNVASAISSSGLTTHHWVDELNNEVKLLKIGDNGELQENLTGTR 1134
Query: 1185 GENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGK---VKGTP 1241
G++ P+ PSLLHD++F GN GYESGS GC+ LFCW K ++ K VKGTP
Sbjct: 1135 GQHCPLSPSLLHDTNF-GNNKDNLGGYESGSGRVGCNILFCWKTKKTQRRSKSKQVKGTP 1193
Query: 1242 VRSRKG--GHFSLFVDCTKAKKSESRLRR 1268
VRSR+ FSLF C K +K+E +RR
Sbjct: 1194 VRSRRNRKSRFSLFNGCAKPRKAEGNIRR 1222
>gi|18395372|ref|NP_565285.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
gi|8980710|gb|AAF82285.1|AF264023_1 STICHEL [Arabidopsis thaliana]
gi|20197093|gb|AAC18938.2| similar to prokaryotic DNA polymerase III gamma subunit [Arabidopsis
thaliana]
gi|330250491|gb|AEC05585.1| AAA-type ATPase-like protein [Arabidopsis thaliana]
Length = 1218
Score = 1337 bits (3461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 761/1293 (58%), Positives = 932/1293 (72%), Gaps = 116/1293 (8%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASG---SAWKINNNN 62
+L LKKELTQIRKA R LRDPGTTSSWKSPL SSRS+A AS +G S + I +
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVALLETPASRNGGSSSQFPIRGES 70
Query: 63 KQLVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSS 122
+ N GKEK+VFL NWK QKSSSE S +A+N ++ + ++D +
Sbjct: 71 -------------STNRRGKEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEDASSWTQ 117
Query: 123 SVIESVDDSLSDARNGGDSKSDTYLGENRASSI-FRCRDANLVSVATPAMKRAMAAKRKS 181
+ + DD SDARNGGDS Y E +++S+ FRCRD NL S M+++ K
Sbjct: 118 ASVNDDDDV-SDARNGGDS----YRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKK 172
Query: 182 KRHKTLS----DSLTRYQQKQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSG 236
K K +S D L++YQ + I+ARN A SDDTE+ NSED RK +G
Sbjct: 173 KSKKKISSSRLDCLSKYQPRDDIVARNCNA----------GSDDTEEELSNSEDLRKVTG 222
Query: 237 ASPLLLKLKHKNWSHSSSKLLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWD 294
ASPLLLKLK KNWS SSS+LL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD
Sbjct: 223 ASPLLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWD 282
Query: 295 ATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSS 354
TT S+ND DD +DD+LDLPGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSS
Sbjct: 283 GTTTSVNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSS 342
Query: 355 ILCGSQTMY--HGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
ILCGSQ++Y H R S S K+++A RSAQGVLPLL+ GDGR GSS+GTG SDDELS
Sbjct: 343 ILCGSQSVYRRHNRHSSGGYS-KQKIACRSAQGVLPLLSYGGDGRGGSSLGTGLSDDELS 401
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENIRSLSQKYKPIFFD 471
TN+GELDLEA SRLDGRRWS+S RSQDGLE VAL+GEEEEG E IRS SQKY+P+FF+
Sbjct: 402 TNYGELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFE 461
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
ELIGQ+IVVQSL+N + R RIAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC
Sbjct: 462 ELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYC 521
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
+ECNDF+SGKS++F E+DG NKKG D+VRY+LK+L LP S +KVFVIDECHLLPSK
Sbjct: 522 KECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSK 581
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
TWL+FLKFLE P Q+VVFIFITTD++NVPR+IQSRCQK+LF+K+KD DIV RL+KI+++E
Sbjct: 582 TWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDE 641
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+V+ ALDLIA+NADGSLRDAETML+QLSLLGKRIT++LVNELVGVVS+EKLLELLEL
Sbjct: 642 NLDVDLHALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLEL 701
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLT 761
A+SSDTAETVKRAREL+D G DP+VLMSQLASLIMDIIAGTY + GR+LT
Sbjct: 702 ALSSDTAETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLT 761
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
EA++E LKHALKLLSEAEKQLR+S++R TWFTATLLQLGSM SP T +GSSRRQSSR T
Sbjct: 762 EADMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRAT 821
Query: 822 EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP 881
++DP+S SRE + YK+ G + ++A SPAS+ + NGN H + SR+ +N Y
Sbjct: 822 DDDPASVSREVMAYKQRIGGLHFSKSA-SPASVIKR-NGNHSHEAKPFSRVIDNNCYKSS 879
Query: 882 SHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLL 941
S S++ ++ S +I ++ R+SEKL +IW +CIERCHSKTL+QLL HGKL+
Sbjct: 880 SSSQMIESEGSIASHENSIASTMMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLI 939
Query: 942 SISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHG 1001
SISEVE +L+AY+AFG+ DIK RAERFLSSITNSIE VLRR+VEVRIILLP+ E +
Sbjct: 940 SISEVEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLRRSVEVRIILLPETELLV--- 996
Query: 1002 ISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGK 1061
+P +K E T N S G N + G
Sbjct: 997 ----VPHQTRKPEMT----------------NKS-----------------GHLNNIAG- 1018
Query: 1062 FKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAWLQATEKGAPGS 1121
L A+ + E+ S+ R ++PMQRIESIIREQRLETAWLQ +K PGS
Sbjct: 1019 ------------LNAETDVEVGSSVESRSKLPMQRIESIIREQRLETAWLQTADKDTPGS 1066
Query: 1122 LGHLRPEKNQVLPQEDIYRQNHMESLL-SSGLSSQQWEDELNQELKILKLNEDRVLKKDE 1180
+ ++PE+NQ+LPQED YRQ ++ S + SSGL++ QW DELN E+K+LK+ ++ L+++
Sbjct: 1067 IIRVKPERNQILPQEDTYRQTNVASAISSSGLTTHQWVDELNNEVKLLKIGDNGELQENL 1126
Query: 1181 NGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNTKPHKKGK---V 1237
G +G++ P+ PSLLHD++F GN GYESGS GC+ LFCWN K ++ K V
Sbjct: 1127 TGTRGQHCPLSPSLLHDTNF-GNNKDNLGGYESGSGRVGCNILFCWNTKKTQRRSKSKQV 1185
Query: 1238 KGTPVRSRKG--GHFSLFVDCTKAKKSESRLRR 1268
KGTPVRSR+ FSLF C K +K+E +RR
Sbjct: 1186 KGTPVRSRRNRKSRFSLFNGCAKPRKAEGNIRR 1218
>gi|297739441|emb|CBI29623.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 1079 bits (2791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/889 (64%), Positives = 675/889 (75%), Gaps = 84/889 (9%)
Query: 396 GRAGSSIGTGRSDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGV 454
GR G I DDELSTNFGELDLEALSRLDGRRWSSSCRSQ+ +E+VALNGE EEEG
Sbjct: 256 GRQGCGIPC-YCDDELSTNFGELDLEALSRLDGRRWSSSCRSQEAMELVALNGEREEEGS 314
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
EN+RSLSQKY+P+FFDELIGQNIVVQSLVN ISRGRIAPVYLFQGPRGTGKTSTA+IF+
Sbjct: 315 PENVRSLSQKYRPMFFDELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFT 374
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
AALNC+A +TKPCG CREC+DFISGKSR+F E+DGTNKKG+DR+RY+LK + G PS
Sbjct: 375 AALNCLAVGETKPCGICRECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPL 434
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
+KVFVIDECHLLPSKTWLAFLKFLEEPP +VVFIFIT D++NVPR++ SRCQKYLFNK
Sbjct: 435 SPYKVFVIDECHLLPSKTWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNK 494
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
IK+GDIVARLRKIS +ENL+VE DAL+LIALNADGSLRDAETMLDQLSLLGKRIT+SLVN
Sbjct: 495 IKEGDIVARLRKISDDENLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVN 554
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
+LVGVVS+EKLLELLELAMSSDTAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY
Sbjct: 555 DLVGVVSDEKLLELLELAMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYH 614
Query: 755 I----------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
I GGRSLTEAE++RLKHALKLLSEAEKQLR+SSER TWFTATLLQLGS S
Sbjct: 615 IVDAQQSDSFFGGRSLTEAEMDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGS-PS 673
Query: 805 PDLTQSGSSRRQSSRTTEEDPSSTSREA-VVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
PD T SGSSRRQSS+TTE+DPSS SR+A +V+K+ +MP+ + SP S+ + NS
Sbjct: 674 PDPTLSGSSRRQSSKTTEDDPSSASRDATIVHKQKPNAHHMPRKSFSPISMPKSAEKNST 733
Query: 864 HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIE 923
H G++ + +++GA A S + ++GN + N++KL +IW +CIE
Sbjct: 734 HQGDLF---------------QFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIE 778
Query: 924 RCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRN 983
RCHSKTL+QLL HGKL+SISE E L+AYVAF D DIK RAERFLSSITNSIE V+R N
Sbjct: 779 RCHSKTLRQLLHAHGKLVSISEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSN 838
Query: 984 VEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIP 1043
VEV+IILLPDGE S++ KA+ + D P
Sbjct: 839 VEVKIILLPDGEISMNM-----------------------KAVGGGSRD----------P 865
Query: 1044 VNVARKVSR--GSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESII 1101
N + + R G +EL A+G+ E SSTK R QEIPM RI+SII
Sbjct: 866 SNCSPLLDRTFGPTDEL-----------------AEGHIERSSTKERNQEIPMHRIDSII 908
Query: 1102 REQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDEL 1161
REQRLETAWLQ EKG P S+ L+PEKNQ+LPQ+ YRQN +ES+ S G+ SQ+WEDEL
Sbjct: 909 REQRLETAWLQVAEKGTPRSMSRLKPEKNQILPQDGTYRQNQVESMNSVGVPSQKWEDEL 968
Query: 1162 NQELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCS 1221
N E+K+LK+N+ R L+KD GK+ ++YPI PS LHDSSF+ NF+KE+ GYESG+ + GC+
Sbjct: 969 NHEIKVLKINDRRALQKDPVGKRVDHYPISPSSLHDSSFVANFNKESMGYESGTGSVGCN 1028
Query: 1222 GLFCWNNTKPHKKGKVKG-TPVRSRK--GGHFSLFVDCTKAKKSESRLR 1267
FCWNN KP K+GK+K P+ S K G F F +C K++K++SR +
Sbjct: 1029 SFFCWNNDKPPKRGKIKQRPPLPSPKVGRGRFPCFGECGKSRKTDSRFK 1077
Score = 233 bits (594), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 167/329 (50%), Positives = 193/329 (58%), Gaps = 91/329 (27%)
Query: 11 KKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVDED 69
KK+LTQIRKAAR LRDPGTTSSW+S ++S
Sbjct: 13 KKQLTQIRKAARVLRDPGTTSSWRSASQKAKS---------------------------- 44
Query: 70 NNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVD 129
+VNG+ N+DD+ VD GS SVD
Sbjct: 45 --------SVNGE-----------------------NEDDEDGVD-----GS-----SVD 63
Query: 130 DSLSDARNGGDSKSDTYLGENR-----ASSIFRCRDANLVSVATPAMKRAMAAKRKSKRH 184
DSLSD RNG DSKSDTY+G R AS IFRCRDANLV AM R K+K
Sbjct: 64 DSLSDWRNGVDSKSDTYIGGRRHRRHHASMIFRCRDANLV-----AMGRPSGIKKKKGSK 118
Query: 185 KTLSDSLTRYQQKQIILARNSAALG---------LGRDESVEQSDDTEDYCNSEDFRKYS 235
S +L R+QQ+Q L N+A G LGRD+SVEQSDDTE+Y NSEDFR+
Sbjct: 119 NVHSIALLRHQQQQQQL--NTARSGNSKRLLEGILGRDDSVEQSDDTEEYYNSEDFRRIC 176
Query: 236 GASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDA 295
ASPLL +L+ +NWS SSS+LL+ RK+DSSYSYSTPALSTSSYN Y NRNPST+ SWD
Sbjct: 177 EASPLLSRLRQRNWSRSSSRLLRSKRKDDSSYSYSTPALSTSSYNPYGNRNPSTVESWDG 236
Query: 296 TTASLNDNDDAMDDHLDLPGRQGCGIPCY 324
TTASL+D DD +DD LDLPGRQGCGIPCY
Sbjct: 237 TTASLHDGDDEVDDQLDLPGRQGCGIPCY 265
>gi|297849856|ref|XP_002892809.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
gi|297338651|gb|EFH69068.1| hypothetical protein ARALYDRAFT_888824 [Arabidopsis lyrata subsp.
lyrata]
Length = 1130
Score = 1055 bits (2729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 605/1011 (59%), Positives = 727/1011 (71%), Gaps = 78/1011 (7%)
Query: 7 RLQLKKELTQIRKAAR--LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQ 64
+L LKKELTQIRK A LRDPGTTSSWKSPL+SSRS VA + +I NN Q
Sbjct: 11 KLHLKKELTQIRKVAAKGLRDPGTTSSWKSPLTSSRS----VAEPPVTSKNVEILCNN-Q 65
Query: 65 LVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSV 124
L D+ + G KEK+VFL NWK QK+SSE S D ++G+SS+
Sbjct: 66 L---DSQFPSSRGFGKEKEKKVFLYNWKTQKTSSEKS--------------DGEDGTSSI 108
Query: 125 IESV--DDSLSDARNGGDSKSDTYLGENR-ASSIFRCRDANLVSVATPAMKRAMAAKRKS 181
+ DD +SDARNGG D+ LGE R AS IF CRD NLVS ++ +K+KS
Sbjct: 109 QAGLNDDDDVSDARNGG---GDSCLGETRSASMIFSCRDTNLVSPGFSKFRKNGFSKKKS 165
Query: 182 KRHKTLSDSLTRYQQKQIILARNSAALGLGRDE----SVEQSDDTEDYCNSEDFRKYSGA 237
K +S +Q K+ I ++ A S E SD+TED+ NSE+ K S
Sbjct: 166 KELDLISP--YHHQPKEAIFRSSAKARKFPSHHLHAASAEVSDETEDFSNSENPTKVS-- 221
Query: 238 SPLLLKLKHKNWSHSSSKLLKG-GRKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDA 295
SPLL KLKHKNWS SSSK L+ ++EDSS + STPALSTSSYN Y RNPST+GSW+
Sbjct: 222 SPLLSKLKHKNWSRSSSKFLRATSKREDSSLTCNSTPALSTSSYNMYGIRNPSTVGSWED 281
Query: 296 TTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSI 355
L+D++ GRQGCGIP YW+KR KHRG C SCCSPS SDTLRRKGSSI
Sbjct: 282 GDDELDDDNLDFK------GRQGCGIPFYWTKRNLKHRGGCRSCCSPSFSDTLRRKGSSI 335
Query: 356 LCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNF 415
LCGSQ+ Y R S+ NK+++A RS +GVLPLL GD R GSSIG G SDD+LST+F
Sbjct: 336 LCGSQSAYRRHRHSNGRYNKQKLALRSVKGVLPLLKYGGDSRGGSSIGIGCSDDDLSTDF 395
Query: 416 GELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIG 475
GELDLEA SRLDGRRWS+ C+SQD EEE E+I+SLSQKYKP+FFDELIG
Sbjct: 396 GELDLEAQSRLDGRRWSTCCKSQD---GEGEEEEEEGSTPESIQSLSQKYKPMFFDELIG 452
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCREC 534
Q+IVVQSL++ + +GRIA VYLFQGPRGTGKTSTA+I SAALNC V T++ KPCGYC+EC
Sbjct: 453 QSIVVQSLMSAVKKGRIAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKEC 512
Query: 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWL 594
+D++ GKSR+ +E+D K G ++VRY+LK L P +SPR+KVFVIDECHLLPS TWL
Sbjct: 513 SDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSPRYKVFVIDECHLLPSMTWL 572
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN 654
+ LKFLE P Q+VVFI ITTD+DNVPR+IQSRCQKYLFNK++DGDIV RLRKI+ +ENL+
Sbjct: 573 SLLKFLENPLQKVVFICITTDLDNVPRTIQSRCQKYLFNKVRDGDIVVRLRKIALDENLD 632
Query: 655 VEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMS 714
VE ALDLIALNADGSLRDAETML+QLSL+GKRIT LVNELVGVVS++KLLELLELA+S
Sbjct: 633 VESQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALS 692
Query: 715 SDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAE 764
SDTAETVK+AREL+D G DP+++MSQLASLIMDIIAG Y + R+LTEA+
Sbjct: 693 SDTAETVKKARELLDLGADPVLMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEAD 752
Query: 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEED 824
LERLKHALKLLSEAEKQLR+S++R TWF ATLLQLGS+ SP T +GSSRRQSSR T+E
Sbjct: 753 LERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSVPSPGTTHTGSSRRQSSRATDE- 811
Query: 825 PSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHS 884
S SRE + YK+ SG Q N+ SP S+R+ +GN H EV S S
Sbjct: 812 --SISREVIAYKQRSGLQC--SNSASPTSMRK--SGNLVH--EV--------KLSSSSRE 855
Query: 885 RLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSIS 944
L+ ++A S + + +TCRNSEKL +IW +C++RCHSKTLKQLL HGKLLSIS
Sbjct: 856 VLESETSIA-SHDDTTTSSMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSIS 914
Query: 945 EVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGE 995
EVE +L+AY+AFG+ +IK+RAERF+SSITNSIE VLRRNVEVRIILL + E
Sbjct: 915 EVEGILVAYIAFGEREIKARAERFVSSITNSIEMVLRRNVEVRIILLSETE 965
Score = 127 bits (319), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 90/150 (60%), Gaps = 30/150 (20%)
Query: 1091 EIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSS 1150
EIPM+RIE+II+EQRLET WLQ PGS G L+PE+NQ+LPQED
Sbjct: 988 EIPMKRIEAIIQEQRLETEWLQKI----PGSQGRLKPERNQILPQED------------- 1030
Query: 1151 GLSSQQWEDELNQELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQG 1210
+K+LK+ E K+++ GK+ E+ P+ PSLLH+S+F N K+N G
Sbjct: 1031 -----------TNGVKVLKICEMGEFKENQTGKRMEHCPVSPSLLHNSNFTNN--KDNLG 1077
Query: 1211 YESGSQAGGCSGLFCWNNTKPHKKGKVKGT 1240
YES S G CS LFCWN K ++ K+KGT
Sbjct: 1078 YESESGRGVCSLLFCWNTQKSPRRTKIKGT 1107
>gi|30683811|ref|NP_172898.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332191046|gb|AEE29167.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1116
Score = 1024 bits (2648), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1009 (57%), Positives = 709/1009 (70%), Gaps = 88/1009 (8%)
Query: 7 RLQLKKELTQIRKAAR--LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQ 64
+L LKKELT IRK A LRDPGTTSSWKSPL+SSR V AS + ++NN
Sbjct: 11 KLHLKKELTHIRKVASKGLRDPGTTSSWKSPLTSSR----FVVEPPASNNVEILSNNQLD 66
Query: 65 LVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDE----- 119
+ V NNG KEK+VFL NWK Q++SSE + + EDE
Sbjct: 67 SQFPSSRVFGNNGK--EKEKKVFLYNWKTQRTSSEKT-------------EGEDETSWIQ 111
Query: 120 GSSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKR 179
S + + DD +SDARNGGDS L E R++S+ R + + + + ++ K
Sbjct: 112 ASLNDDDDDDDDVSDARNGGDS----CLEETRSASMIR--KSGFIKKKSKELDLSIGRKS 165
Query: 180 KSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASP 239
+K S L ++ L + RDES D+TED+ NSE+F +SP
Sbjct: 166 TAKARNFPSHHL-----------HVASGLSVVRDES----DETEDFSNSENF-PTKVSSP 209
Query: 240 LLLKLKHKNWSHSSSKLLKG-GRKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATT 297
LLLKLK KNWS SSSK L+G ++EDSS++ STPALSTSSYN Y RNPST+GSW+
Sbjct: 210 LLLKLKRKNWSRSSSKFLRGTSKREDSSHTCNSTPALSTSSYNMYGIRNPSTVGSWEDGD 269
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
L+D++ GRQGCGIP YW+KR KHRG C SCCSPS SDTLRRKGSSILC
Sbjct: 270 DELDDDNLD------FKGRQGCGIPFYWTKRNLKHRGGCRSCCSPSFSDTLRRKGSSILC 323
Query: 358 GSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGE 417
GSQ++Y R SS NK+++A RSA+GVLPLL GD R GSSIG G SDD+LST+FGE
Sbjct: 324 GSQSVYRRHRHSSGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGE 383
Query: 418 LDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQN 477
+DLEA SRLDGRRWSS C+SQDG EE E+I+SLSQKYKP+FFDELIGQ+
Sbjct: 384 IDLEAQSRLDGRRWSSCCKSQDG---EREEEEEGGSTPESIQSLSQKYKPMFFDELIGQS 440
Query: 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECND 536
IVVQSL+N + +GR+A VYLFQGPRGTGKTSTA+I SAALNC V T++ KPCGYC+EC+D
Sbjct: 441 IVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSD 500
Query: 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAF 596
++ GKSR+ +E+D K G ++VRY+LK L P +S R+KVFVIDECHLLPS+TWL+
Sbjct: 501 YMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSL 560
Query: 597 LKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE 656
LKFLE P Q+ VF+ ITTD+DNVPR+IQSRCQKY+FNK++DGDIV RLRKI+++ENL+VE
Sbjct: 561 LKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVE 620
Query: 657 PDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
ALDLIALNADGSLRDAETML+QLSL+GKRIT LVNELVGVVS++KLLELLELA+SSD
Sbjct: 621 SQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSD 680
Query: 717 TAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELE 766
TAETVK+AREL+D G DP+++MSQLASLIMDIIAG Y + R+LTEA+LE
Sbjct: 681 TAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLE 740
Query: 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPS 826
RLKHALKLLSEAEKQLR+S++R TWF ATLLQLGSM SP T +GSSRRQSSR TEE
Sbjct: 741 RLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPSPGTTHTGSSRRQSSRATEE--- 797
Query: 827 STSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRL 886
S SRE + YK+ SG Q N SP S+R+ N S + S SH
Sbjct: 798 SISREVIAYKQRSGLQC--SNTASPTSIRKSGNLVREVKLSSSSSEVLESDTSMASH--- 852
Query: 887 KDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEV 946
+ +TCRNSEKL +IW +C++RCHSKTLKQLL HGKLLSISEV
Sbjct: 853 ----------DDTTASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEV 902
Query: 947 ERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGE 995
E +L+AY+AFG+G+IK+RAERF+SSITNSIE VLRRNVEVRIILL + E
Sbjct: 903 EGILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEVRIILLSETE 951
Score = 128 bits (321), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 92/150 (61%), Gaps = 30/150 (20%)
Query: 1091 EIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSS 1150
EIPM+RIE+II+EQRLET WLQ T PGS G L+PE+NQ+LPQED
Sbjct: 974 EIPMKRIEAIIQEQRLETEWLQKT----PGSQGRLKPERNQILPQED------------- 1016
Query: 1151 GLSSQQWEDELNQELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQG 1210
+K+LK+ E +++++GK+ E+ P+ PSLLH+S+F N K+N G
Sbjct: 1017 -----------TNGVKVLKICEMGEFQENQSGKRMEHCPVSPSLLHNSNFTNN--KDNLG 1063
Query: 1211 YESGSQAGGCSGLFCWNNTKPHKKGKVKGT 1240
YES S G CS LFCWN K ++ K+KGT
Sbjct: 1064 YESESGRGVCSLLFCWNTQKSPRRTKIKGT 1093
>gi|7262689|gb|AAF43947.1|AC012188_24 Contains similarity to DNA Pol III Gamma and Tau from Chlamydia
trachomatis gb|AE001306.1 and contains an AAA (ATPase)
PF|00004 domain [Arabidopsis thaliana]
Length = 1071
Score = 1018 bits (2633), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 583/1016 (57%), Positives = 706/1016 (69%), Gaps = 95/1016 (9%)
Query: 7 RLQLKKELTQIRKAAR--LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQ 64
+L LKKELT IRK A LRDPGTTSSWKSPL+SSR V AS + ++NN
Sbjct: 11 KLHLKKELTHIRKVASKGLRDPGTTSSWKSPLTSSR----FVVEPPASNNVEILSNNQLD 66
Query: 65 LVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDE----- 119
+ V NNG KEK+VFL NWK Q++SSE + + EDE
Sbjct: 67 SQFPSSRVFGNNGK--EKEKKVFLYNWKTQRTSSEKT-------------EGEDETSWIQ 111
Query: 120 GSSSVIESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKR 179
S + + DD +SDARNGGDS L E R++S+ R + + + + ++ K
Sbjct: 112 ASLNDDDDDDDDVSDARNGGDS----CLEETRSASMIR--KSGFIKKKSKELDLSIGRKS 165
Query: 180 KSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASP 239
+K S L ++ L + RDES D+TED+ NSE+F +SP
Sbjct: 166 TAKARNFPSHHL-----------HVASGLSVVRDES----DETEDFSNSENF-PTKVSSP 209
Query: 240 LLLKLKHKNWSHSSSKLLKG-GRKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATT 297
LLLKLK KNWS SSSK L+G ++EDSS++ STPALSTSSYN Y RNPST+GSW+
Sbjct: 210 LLLKLKRKNWSRSSSKFLRGTSKREDSSHTCNSTPALSTSSYNMYGIRNPSTVGSWEDGD 269
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
L+D++ GRQGCGIP YW+KR KHRG C SCCSPS SDTLRRKGSSILC
Sbjct: 270 DELDDDNLD------FKGRQGCGIPFYWTKRNLKHRGGCRSCCSPSFSDTLRRKGSSILC 323
Query: 358 GSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGE 417
GSQ++Y R SS NK+++A RSA+GVLPLL GD R GSSIG G SDD+LST+FGE
Sbjct: 324 GSQSVYRRHRHSSGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGE 383
Query: 418 LDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQN 477
+DLEA SRLDGRRWSS C+SQDG EE E+I+SLSQKYKP+FFDELIGQ+
Sbjct: 384 IDLEAQSRLDGRRWSSCCKSQDG---EREEEEEGGSTPESIQSLSQKYKPMFFDELIGQS 440
Query: 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-VATDQTKPCGYCRECND 536
IVVQSL+N + +GR+A VYLFQGPRGTGKTSTA+I SAALNC V T++ KPCGYC+EC+D
Sbjct: 441 IVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSD 500
Query: 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAF 596
++ GKSR+ +E+D K G ++VRY+LK L P +S R+KVFVIDECHLLPS+TWL+
Sbjct: 501 YMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSL 560
Query: 597 LKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE 656
LKFLE P Q+ VF+ ITTD+DNVPR+IQSRCQKY+FNK++DGDIV RLRKI+++ENL+VE
Sbjct: 561 LKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVE 620
Query: 657 PDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
ALDLIALNADGSLRDAETML+QLSL+GKRIT LVNELVGVVS++KLLELLELA+SSD
Sbjct: 621 SQALDLIALNADGSLRDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSD 680
Query: 717 TAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR-----------------S 759
TAETVK+AREL+D G DP+++MSQLASLIMDIIAG Y
Sbjct: 681 TAETVKKARELLDLGADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNCEYLKLQ 740
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSR 819
+TEA+LERLKHALKLLSEAEKQLR+S++R TWF ATLLQLGSM SP T +GSSRRQSSR
Sbjct: 741 MTEADLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQLGSMPSPGTTHTGSSRRQSSR 800
Query: 820 TTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYS 879
TEE S SRE + YK+ SG Q N SP S+R+ N S + S
Sbjct: 801 ATEE---SISREVIAYKQRSGLQC--SNTASPTSIRKSGNLVREVKLSSSSSEVLESDTS 855
Query: 880 KPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGK 939
SH + +TCRNSEKL +IW +C++RCHSKTLKQLL HGK
Sbjct: 856 MASH-------------DDTTASTMTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGK 902
Query: 940 LLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGE 995
LLSISEVE +L+AY+AFG+G+IK+RAERF+SSITNSIE VLRRNVEVRIILL + E
Sbjct: 903 LLSISEVEGILVAYIAFGEGEIKARAERFVSSITNSIEMVLRRNVEVRIILLSETE 958
Score = 73.2 bits (178), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 39/47 (82%), Gaps = 4/47 (8%)
Query: 1091 EIPMQRIESIIREQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQED 1137
EIPM+RIE+II+EQRLET WLQ T PGS G L+PE+NQ+LPQED
Sbjct: 981 EIPMKRIEAIIQEQRLETEWLQKT----PGSQGRLKPERNQILPQED 1023
>gi|147856456|emb|CAN80768.1| hypothetical protein VITISV_013865 [Vitis vinifera]
Length = 785
Score = 965 bits (2495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/764 (68%), Positives = 601/764 (78%), Gaps = 52/764 (6%)
Query: 11 KKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVDED 69
KK+LTQIRKAAR LRDPGTTSSW+SPLS++RSL+ + A ++
Sbjct: 13 KKQLTQIRKAARVLRDPGTTSSWRSPLSTARSLSLSAATPPPPQPPPPPPRPPEE----- 67
Query: 70 NNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIESVD 129
KRVFL NW++ +++S N+DD+ VD GSS VD
Sbjct: 68 -------------SKRVFLYNWRSASQKAKSSVNGENEDDEDGVD-----GSS-----VD 104
Query: 130 DSLSDARNGGDSKSDTYLGENR-----ASSIFRCRDANLVSVATPAMKRAMAAKRKSKRH 184
DSLSD RNG DSKSDTY+G R AS IFRCRDANLV AM R K+K
Sbjct: 105 DSLSDWRNGVDSKSDTYIGGRRHRRHHASMIFRCRDANLV-----AMGRPSGIKKKKGSK 159
Query: 185 KTLSDSLTRYQQKQIILARNSAALG---------LGRDESVEQSDDTEDYCNSEDFRKYS 235
S +L R+QQ+Q N+A G LGRD+SVEQSDDTE+Y NSEDFR+
Sbjct: 160 NVHSIALLRHQQQQQQQQLNTARSGNSKRLLEGILGRDDSVEQSDDTEEYYNSEDFRRIC 219
Query: 236 GASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDA 295
ASPLL +L+ +NWS SSS+LL+ RK+DSSYSYSTPALSTSSYN Y NRNPST+ SWD
Sbjct: 220 EASPLLSRLRQRNWSRSSSRLLRSKRKDDSSYSYSTPALSTSSYNPYGNRNPSTVESWDG 279
Query: 296 TTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKR-TPKHRGVCGS--CCSPSLSDTLRRKG 352
TTASL+D DD +DD LDLPGRQGCGIPCYWS+R TP+HRG+CGS C SPSLSDT+RRKG
Sbjct: 280 TTASLHDGDDEVDDQLDLPGRQGCGIPCYWSRRSTPRHRGICGSGSCDSPSLSDTIRRKG 339
Query: 353 SSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
SS+LCGSQT+Y R S KRR S + QG+LPLL N+ DG GSS+GTGRSDDELS
Sbjct: 340 SSMLCGSQTIYPRRHGLPLGSKKRRSVSMTPQGLLPLLTNSCDGHGGSSMGTGRSDDELS 399
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGE-EEEGVLENIRSLSQKYKPIFFD 471
TNFGELDLEALSRLDGRRWSSSCRSQ+ +E+VALNGE EEEG EN+RSLSQKY+P+FFD
Sbjct: 400 TNFGELDLEALSRLDGRRWSSSCRSQEAMELVALNGEREEEGSPENVRSLSQKYRPMFFD 459
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
ELIGQNIVVQSLVN ISRGRIAPVYLFQGPRGTGKTSTA+IF+AALNC+A +TKPCG C
Sbjct: 460 ELIGQNIVVQSLVNAISRGRIAPVYLFQGPRGTGKTSTARIFTAALNCLAVGETKPCGIC 519
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
REC+DFISGKSR+F E+DGTNKKG+DR+RY+LK + G PS +KVFVIDECHLLPSK
Sbjct: 520 RECSDFISGKSRHFREIDGTNKKGMDRMRYLLKTMPFGTPSPLSPYKVFVIDECHLLPSK 579
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
TWLAFLKFLEEPP +VVFIFIT D++NVPR++ SRCQKYLFNKIK+GDIVARLRKIS +E
Sbjct: 580 TWLAFLKFLEEPPPQVVFIFITPDLENVPRTVLSRCQKYLFNKIKEGDIVARLRKISDDE 639
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+VE DAL+LIALNADGSLRDAETMLDQLSLLGKRIT+SLVN+LVGVVS+EKLLELLEL
Sbjct: 640 NLDVESDALELIALNADGSLRDAETMLDQLSLLGKRITTSLVNDLVGVVSDEKLLELLEL 699
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
AMSSDTAETVKRARELMDSGVDP+VLMSQLASLIMDIIAGTY I
Sbjct: 700 AMSSDTAETVKRARELMDSGVDPIVLMSQLASLIMDIIAGTYHI 743
>gi|242058891|ref|XP_002458591.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
gi|241930566|gb|EES03711.1| hypothetical protein SORBIDRAFT_03g036320 [Sorghum bicolor]
Length = 1176
Score = 940 bits (2429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 600/1266 (47%), Positives = 777/1266 (61%), Gaps = 133/1266 (10%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNN--NKQL 65
L LKKEL +RKA LRDP T SSW+SPLSS L + IN+N L
Sbjct: 14 LHLKKELIALRKARFLRDPETCSSWRSPLSSKSFLTTSGV----------INHNEIGSSL 63
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
++ + K K V+L NW++ + S S V +D DD +
Sbjct: 64 SEKHTEPAAAPPKSEKKRKNVYLYNWRHHSNKSSESGV------KLDADDRQ-------- 109
Query: 126 ESVDDSLSDA--RNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMA------A 177
S D SL NG DS+SDT L SI+ + +N TP + +
Sbjct: 110 ASADCSLESPCISNGMDSRSDTCL--EVPVSIYSVQGSN---SCTPVKRTVRRVRRSSFS 164
Query: 178 KRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRK---- 233
K+ + R+ T+S K + L NS EQS+DTE+Y NSE +
Sbjct: 165 KKGAMRNSTVS--------KLLDLHVNSG----------EQSEDTENY-NSETHEQLQKV 205
Query: 234 --YSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIG 291
+S ++ L S + SKLL+ R+E SS+S TP +STSSY RY RNPST+G
Sbjct: 206 GYFSRSTSPLFAASGCFSSTNPSKLLRVPRREGSSFS-CTP-VSTSSYYRYKGRNPSTVG 263
Query: 292 SWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRK 351
SWD TTA+ D+D + +L Q CGIPCYWSKR+ KH+G SC SPSLSDTLRRK
Sbjct: 264 SWDGTTAASLDDDGL--NQPELLTNQRCGIPCYWSKRS-KHKGSERSC-SPSLSDTLRRK 319
Query: 352 GSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDEL 411
GSS+LCGSQT+ HGR++SS SNK +S+QGV PLL GD + + DE+
Sbjct: 320 GSSLLCGSQTI-HGRKKSSG-SNKYGYFKKSSQGV-PLL---GDSSHFAYSSFDSASDEV 373
Query: 412 STNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFD 471
ST FGELDLEALSRLDGRRWSS C+SQDG +AL+ + V+ + RSLSQKY+P F
Sbjct: 374 STIFGELDLEALSRLDGRRWSS-CKSQDG---IALSVSGADHVVSDHRSLSQKYRPRSFL 429
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
E++GQN VVQSL N I+R RIAP YLF GPRGTGKTS+A+I SAAL+C AT +TKPCG C
Sbjct: 430 EIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALSCTATGETKPCGVC 489
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
EC+DF +G N +EVD TN+KG++RVR++++++ A + S R+KVFV+DECH++ SK
Sbjct: 490 TECSDFFTGNGINLIEVDATNRKGINRVRHLIENIPAS--ATSSRYKVFVVDECHMVSSK 547
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
W AF+KFL+EP RVVFIFIT D +N+PRS+ SRCQKY+F+KIKD DIV RLRKI+ +E
Sbjct: 548 VWSAFMKFLDEPLPRVVFIFITIDPENLPRSVVSRCQKYMFSKIKDIDIVCRLRKIAMKE 607
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+VE ALDLIALN+DGSLRDAETMLDQL LLGK+IT SLVN+LVGVVSEEKLL+LLE+
Sbjct: 608 NLDVELAALDLIALNSDGSLRDAETMLDQLCLLGKKITPSLVNDLVGVVSEEKLLDLLEI 667
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLT 761
AMSSDTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T
Sbjct: 668 AMSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGGDGIGGRNIT 727
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
+AELERL+ AL++LS+AEKQ+RLSSER TWFTA LLQLGS H+ ++TQS SS +QS++ T
Sbjct: 728 DAELERLQQALRILSDAEKQIRLSSERSTWFTAALLQLGSGHNSEITQSRSSSKQSAKAT 787
Query: 822 EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS-RHLGEVLSRIDGHNSYSK 880
E RE+ + S ++ L+ +S + L + SR+ N
Sbjct: 788 SETMMEAVRESSASRTTSHHLSTFPDSKKIVDLKTTSGHSSPQGLASLSSRMRP-NENMI 846
Query: 881 PSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKL 940
+ R D L +Q G + C S+ L IW +CIE CHSKTL+QLL HGKL
Sbjct: 847 YAECRSVDRALLESAQTGISSEQKAMNCGISDNLTRIWRKCIENCHSKTLRQLLYDHGKL 906
Query: 941 LSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHH 1000
S+ E E ++A++AF D DIK RA+RF+SSI NS+ETVL+ NVEVRI L+
Sbjct: 907 ASVKECEGTIVAFIAFEDNDIKFRAQRFISSIRNSMETVLKCNVEVRICLM--------- 957
Query: 1001 GISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEG 1060
E G K ET D ++SD N R+ +GS N L G
Sbjct: 958 ---QEFLAGGLKHETYP--------------DETAESDVLSCSTNSERR--KGSLN-LSG 997
Query: 1061 KFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIE-SIIREQRLETAWLQATEKGAP 1119
G SN + +D NS + T+G Q++ +++++ S + EQRLE+AWLQA EK P
Sbjct: 998 --AGAVQSSNVPMIISDENSGMHRTRG--QDVSVEQLKLSALDEQRLESAWLQAAEKPTP 1053
Query: 1120 GSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKD 1179
G L RPE+NQ+LPQ Q+H S +++ + S+ + +L+ ELK LK+++ K
Sbjct: 1054 GMLSQARPERNQILPQNG--GQHHGRSSMATIVPSKHVDKDLSNELKALKISDSHGPHKG 1111
Query: 1180 ENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKGKVK 1238
+N + Y I PSLLH ++ + N E+ ESG A GC GLF CW K ++
Sbjct: 1112 QNVQMENGYAISPSLLHRNNHLANCDNESVVSESG--APGCHGLFPCWKTEKTKRRKGKG 1169
Query: 1239 GTPVRS 1244
T +RS
Sbjct: 1170 QTRLRS 1175
>gi|414880241|tpg|DAA57372.1| TPA: hypothetical protein ZEAMMB73_111215 [Zea mays]
Length = 1220
Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 596/1269 (46%), Positives = 779/1269 (61%), Gaps = 141/1269 (11%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNN--NKQL 65
L LKKEL +RKA LRDP T SSW+SPLSS L S SG IN+N L
Sbjct: 60 LHLKKELIALRKARFLRDPETCSSWRSPLSSKSFL-------STSGV---INHNEVGSSL 109
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
++ + K K V+L NW++ + S S V +DVDD +
Sbjct: 110 SEKRTEPAAAPVKSEKKRKNVYLYNWRHHSNKSSESGV------KLDVDDRQ-------- 155
Query: 126 ESVDDSLSDA--RNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMA------A 177
SVD SL NG DS+SDT L SI+ + +N TP + +
Sbjct: 156 ASVDCSLESPCISNGMDSRSDTCL--EVPVSIYSVQGSN---SCTPVKRTVRRVRRSSFS 210
Query: 178 KRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRK---- 233
K+ + R+ T+S K + L NSA EQS+DTE+Y NSE
Sbjct: 211 KKGAMRNSTVS--------KLLDLHVNSA----------EQSEDTENY-NSETHEHLQKV 251
Query: 234 --YSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIG 291
+S ++ L S + SKLL+ R+E SS+S TP +STSSY RY RNPST+G
Sbjct: 252 GYFSHSTSPLFAASGCFSSTNPSKLLRVPRREGSSFS-CTP-VSTSSYYRYKGRNPSTVG 309
Query: 292 SWDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRK 351
SWD TTA+ D+D + +L Q CGIPCYWSKR+ KH+G SC SPSLSDTLRRK
Sbjct: 310 SWDGTTAASLDDDGL--NQPELLTNQRCGIPCYWSKRS-KHKGSERSC-SPSLSDTLRRK 365
Query: 352 GSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDEL 411
G+S+LCGSQTM HGR++SS SNK +S+QGV PLL GD + + DE+
Sbjct: 366 GTSLLCGSQTM-HGRKKSSG-SNKYGYLKKSSQGV-PLL---GDSSHFAYSSFDSASDEV 419
Query: 412 STNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFD 471
ST FGELDLEALSRLDGRRWSS C+SQDG +AL+ + V+ + RSLSQKY+P F
Sbjct: 420 STIFGELDLEALSRLDGRRWSS-CKSQDG---IALSVSGADHVVSDHRSLSQKYRPRSFL 475
Query: 472 ELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYC 531
E++GQN VVQSL N I+R RIAP YLF GPRGTGKTS+A+I SAAL+C AT +TKPCG C
Sbjct: 476 EIVGQNFVVQSLSNAIARERIAPAYLFHGPRGTGKTSSARILSAALSCTATGETKPCGVC 535
Query: 532 RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSK 591
EC+DF +G N +EVD TN+KG++RVR++++++ A + S R+KVFV+DECH++ SK
Sbjct: 536 TECSDFFTGNGTNLIEVDATNRKGINRVRHLIENIPAS--ATSSRYKVFVVDECHMVSSK 593
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
W AF+KFL+EP RVVFIFIT D +N+PRS+ SRCQKY+F+KIKD DIV RLRKI+ +E
Sbjct: 594 VWSAFMKFLDEPLPRVVFIFITIDPENLPRSVVSRCQKYMFSKIKDIDIVCRLRKIAMKE 653
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
NL+VE ALDLIALN+DGSLRDAETMLDQL LLGK+IT SLVN+LVGVVSEEKLL+LLE+
Sbjct: 654 NLDVELAALDLIALNSDGSLRDAETMLDQLCLLGKKITPSLVNDLVGVVSEEKLLDLLEI 713
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLT 761
AMSS+TAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T
Sbjct: 714 AMSSNTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGGDGIGGRNIT 773
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
+AELERL+ AL++LS+AEKQ+RLSSER TWFTA LLQLGS H+ ++TQS SS +QS++ T
Sbjct: 774 DAELERLQQALRILSDAEKQIRLSSERSTWFTAALLQLGSGHNSEITQSRSSSKQSAKAT 833
Query: 822 EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP 881
E RE+ + + ++ L+ +G+S + SR+ + +
Sbjct: 834 SETMMEAMRESSASRSTAHHLSTFPDSKKIVDLKT-TSGHSSPHASLSSRMRHNENMIYA 892
Query: 882 SHSR----LKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
H L D+ ++S + + I S+ L IW +CIE CHSKTL+QLL H
Sbjct: 893 EHMSVDRALLDSAQTSISSEQKGMHSGI-----SDNLTRIWMKCIENCHSKTLRQLLYDH 947
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS 997
GKL S+ E E ++A++AF D DIK RA+RF+SSI NS+ETVL+ NVEVRI L+
Sbjct: 948 GKLTSVKECEGTIVAFIAFEDNDIKFRAQRFISSIRNSMETVLKCNVEVRICLM------ 1001
Query: 998 IHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNE 1057
E G K ET D ++SD N R+ +G N
Sbjct: 1002 ------QEFLAGGLKHETYP--------------DETAESDVLSCSTNSERR--KGVLN- 1038
Query: 1058 LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIE-SIIREQRLETAWLQATEK 1116
L G G +N + ++ S + T+G Q++ +++++ S EQRLE+AWLQA EK
Sbjct: 1039 LSG--AGGVQPNNVPMIISEETSGMHRTRG--QDVSIEQLKVSAFDEQRLESAWLQAAEK 1094
Query: 1117 GAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVL 1176
PG L RPE+NQ+LPQ Q+H S +++ + S+ + +L+ ELK LK+++
Sbjct: 1095 PMPGMLNQGRPERNQILPQNG--GQHHGRSSMATVVPSRHVDKDLSNELKALKISDSHGP 1152
Query: 1177 KKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKG 1235
++ + Y I PSLLH ++ + N E+ ESG A GC GLF CW K ++
Sbjct: 1153 HNGQDVQMESGYAISPSLLHRNNHLANCDNESVVSESG--APGCHGLFPCWKTEKTKRRK 1210
Query: 1236 KVKGTPVRS 1244
T +RS
Sbjct: 1211 GKGQTRLRS 1219
>gi|326528909|dbj|BAJ97476.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1263 (46%), Positives = 756/1263 (59%), Gaps = 142/1263 (11%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNN--KQL 65
L LKKELT +RKA LRDP T SSW+ PLSS + ++ IN+N L
Sbjct: 14 LHLKKELTALRKARFLRDPETCSSWRGPLSSRSCMTSSSI----------INHNEIVSNL 63
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
+ N S+ K K V+L NW+N + S S I+ D D+ S I
Sbjct: 64 TQKYNEPSVGPLKSEKKRKNVYLYNWRNHSNKSSESG--------INFDQDDRSLESPCI 115
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPA------MKRAMAAKR 179
+V D +SDT L SI+ + +N TP ++R+ +K+
Sbjct: 116 SNV----------MDCRSDTCL--EVPVSIYSVQGSN---SGTPVKRTIRRVRRSSFSKK 160
Query: 180 KSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFR------K 233
+ R+ T+S K + L NS EQS+DTE Y NSE+
Sbjct: 161 GAMRNSTVS--------KLLDLHANSG----------EQSEDTETY-NSENHELLQKGGY 201
Query: 234 YSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSW 293
+S ++ L S + SKLLK R+E SS+S TP +STSSY R+ RNPST+GSW
Sbjct: 202 FSRSTSPLFAASGCLSSSNPSKLLKMARREGSSFS-CTP-VSTSSYYRHRGRNPSTVGSW 259
Query: 294 DATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGS 353
DATTA+ D DD ++ L Q CGIP YWSK + K R CSPSLSDTLRRKGS
Sbjct: 260 DATTAASLD-DDGLNQQAPLRS-QRCGIP-YWSKGS-KQRS-----CSPSLSDTLRRKGS 310
Query: 354 SILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELST 413
S+LCGSQTM+ RR+ SS SNK +S+QG PLL GD S + + +ST
Sbjct: 311 SLLCGSQTMH--RRKRSSGSNKCGYLKKSSQGE-PLL---GDSCHFSYSSFDSASEGVST 364
Query: 414 NFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDEL 473
FGELDLEALSRLDGRRWSS C+SQDG +AL + + + RSLSQKY+P + E+
Sbjct: 365 IFGELDLEALSRLDGRRWSS-CKSQDG---IALPSSGADHAVSDQRSLSQKYRPRSYHEI 420
Query: 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533
+GQN VVQSL N I R RIAP YLF GPRGTGKTS A+IFSAAL+C A + KPCG C E
Sbjct: 421 VGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCTANGENKPCGVCME 480
Query: 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW 593
CNDF SG N +EVD +NKKG++R+R++++++ A + S R+KVFV+DECH++ SK W
Sbjct: 481 CNDFFSGNGINLIEVDASNKKGINRIRHLIENIPAS--ATSSRYKVFVVDECHMVSSKVW 538
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL 653
AF+KFL+EP VVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI+ +E L
Sbjct: 539 SAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKETL 598
Query: 654 NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAM 713
++E ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEE LL+LLE+AM
Sbjct: 599 DIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEENLLDLLEIAM 658
Query: 714 SSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------IGGRSLTEAE 764
SSDTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T+AE
Sbjct: 659 SSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGEGIGGRNITDAE 718
Query: 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEED 824
LERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS H ++T S SS +QS++ T E
Sbjct: 719 LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHDSEITHSRSSSKQSAKATSET 778
Query: 825 PSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRH-LGEVLSRIDGHNSYSKPSH 883
RE+ + +S P + + + R +S + L + SR+ +PS
Sbjct: 779 MLEAVRESSASRSVSHPLFTIRGSRKTLDHRTASGRSSPNDLASLSSRM-------RPSD 831
Query: 884 S------RLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
+ R D L +Q N I S L +IW +CI+ CHSKTL+QLL H
Sbjct: 832 NLIYGDCRSVDRVLLDSAQASNSTEQKPII-NGSSDLIQIWRKCIDNCHSKTLQQLLSDH 890
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS 997
GKL SI E E L+A+++F D I SRA+RF+SSI NS+ET LR NVEVR+
Sbjct: 891 GKLASIKEFEGYLVAFISFEDSKIMSRAQRFVSSIRNSMETALRCNVEVRV--------- 941
Query: 998 IHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNE 1057
G+ +E G K E E L + N SD + +N R S G E
Sbjct: 942 ---GLMSEFLAGRLKLEVDLEERAEPDVLSCSTN-----SDRLKGILNAPR--SLGYSEE 991
Query: 1058 LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESI-IREQRLETAWLQATEK 1116
+E K + + S +E ++ + R Q +P +R +++ + EQRLE+AWLQA EK
Sbjct: 992 IEKKLEKYSNTSAAGGGVQPDVTEGNAGRARGQGVPAERSKTVTVEEQRLESAWLQAVEK 1051
Query: 1117 GAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVL 1176
PG+ RPEK Q +PQ Q H +S L+S + S+ + +L+ LK LK++E
Sbjct: 1052 HTPGA----RPEKYQAVPQTG-GGQYHKKSSLASVVPSRNIDKDLSNGLKALKISESHGS 1106
Query: 1177 KKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKG 1235
+K N + I PSLLH ++ + N E+ ESG A GC GLF CW T+ K+G
Sbjct: 1107 QKGPNVGIENGFVISPSLLHSNNELANCDNESVVSESG--APGCHGLFPCW-KTEKSKRG 1163
Query: 1236 KVK 1238
K K
Sbjct: 1164 KAK 1166
>gi|326498857|dbj|BAK02414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1174
Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 585/1263 (46%), Positives = 756/1263 (59%), Gaps = 142/1263 (11%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNN--KQL 65
L LKKELT +RKA LRDP T SSW+ PLSS + ++ IN+N L
Sbjct: 14 LHLKKELTALRKARFLRDPETCSSWRGPLSSRSCMTSSSI----------INHNEIVSNL 63
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
+ N S+ K K V+L NW+N + S S I+ D D+ S I
Sbjct: 64 TQKYNEPSVGPLKSEKKRKNVYLYNWRNHSNKSSESG--------INFDQDDRSLESPCI 115
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPA------MKRAMAAKR 179
+V D +SDT L SI+ + +N TP ++R+ +K+
Sbjct: 116 SNV----------MDCRSDTCL--EVPVSIYSVQGSN---SGTPVKRTIRRVRRSSFSKK 160
Query: 180 KSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFR------K 233
+ R+ T+S K + L NS EQS+DTE Y NSE+
Sbjct: 161 GAMRNSTVS--------KLLDLHVNSG----------EQSEDTETY-NSENHELLQKGGY 201
Query: 234 YSGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSW 293
+S ++ L S + SKLLK R+E SS+S TP +STSSY R+ RNPST+GSW
Sbjct: 202 FSRSTSPLFAASGCLSSSNPSKLLKMARREGSSFS-CTP-VSTSSYYRHRGRNPSTVGSW 259
Query: 294 DATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGS 353
DATTA+ D DD ++ L Q CGIP YWSK + K R CSPSLSDTLRRKGS
Sbjct: 260 DATTAASLD-DDGLNQQAPLRS-QRCGIP-YWSKGS-KQRS-----CSPSLSDTLRRKGS 310
Query: 354 SILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELST 413
S+LCGSQTM+ RR+ SS SNK +S+QG PLL GD S + + +ST
Sbjct: 311 SLLCGSQTMH--RRKRSSGSNKCGYLKKSSQGE-PLL---GDSCHFSYSSFDSASEGVST 364
Query: 414 NFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDEL 473
FGELDLEALSRLDGRRWSS C+SQDG +AL + + + RSLSQKY+P + E+
Sbjct: 365 IFGELDLEALSRLDGRRWSS-CKSQDG---IALPSSGADHAVSDQRSLSQKYRPRSYHEI 420
Query: 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533
+GQN VVQSL N I R RIAP YLF GPRGTGKTS A+IFSAAL+C A + KPCG C E
Sbjct: 421 VGQNFVVQSLSNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCTANGENKPCGVCME 480
Query: 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW 593
CNDF SG N +EVD +NKKG++R+R++++++ A + S R+KVFV+DECH++ SK W
Sbjct: 481 CNDFFSGNGINLIEVDASNKKGINRIRHLIENIPAS--ATSSRYKVFVVDECHMVSSKVW 538
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL 653
AF+KFL+EP VVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI+ +E L
Sbjct: 539 SAFMKFLDEPLPHVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKETL 598
Query: 654 NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAM 713
++E ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEE LL+LLE+AM
Sbjct: 599 DIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEENLLDLLEIAM 658
Query: 714 SSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------IGGRSLTEAE 764
SSDTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T+AE
Sbjct: 659 SSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGEGIGGRNITDAE 718
Query: 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEED 824
LERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS H ++T S SS +QS++ T E
Sbjct: 719 LERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHDSEITHSRSSSKQSAKATSET 778
Query: 825 PSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRH-LGEVLSRIDGHNSYSKPSH 883
RE+ + +S P + + + R +S + L + SR+ +PS
Sbjct: 779 MLEAVRESSASRSVSHPLFTIRGSRKTLDHRTASGRSSPNDLASLSSRM-------RPSD 831
Query: 884 S------RLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
+ R D L +Q N I S L +IW +CI+ CHSKTL+QLL H
Sbjct: 832 NLIYGDCRSVDRVLLDSAQASNSTEQKPII-NGSSDLIQIWRKCIDNCHSKTLQQLLSDH 890
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS 997
GKL SI E E L+A+++F D I SRA+RF+SSI NS+ET LR NVEVR+
Sbjct: 891 GKLASIKEFEGYLVAFISFEDSKIMSRAQRFVSSIRNSMETALRCNVEVRV--------- 941
Query: 998 IHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNE 1057
G+ +E G K E E L + N SD + +N R S G E
Sbjct: 942 ---GLMSEFLAGRLKLEVDLEERAEPDVLSCSTN-----SDRLKGILNAPR--SLGYSEE 991
Query: 1058 LEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESI-IREQRLETAWLQATEK 1116
+E K + + S +E ++ + R Q +P +R +++ + EQRLE+AWLQA EK
Sbjct: 992 IEKKLEKYSNTSAAGGGVQPDVTEGNAGRARGQGVPAERSKTVTVEEQRLESAWLQAVEK 1051
Query: 1117 GAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVL 1176
PG+ RPEK Q +PQ Q H +S L+S + S+ + +L+ LK LK++E
Sbjct: 1052 HTPGA----RPEKYQAVPQTG-GGQYHKKSSLASVVPSRNIDKDLSNGLKALKISESHGS 1106
Query: 1177 KKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKG 1235
+K N + I PSLLH ++ + N E+ ESG A GC GLF CW T+ K+G
Sbjct: 1107 QKGPNVGIENGFVISPSLLHSNNELANCDNESVVSESG--APGCHGLFPCW-KTEKSKRG 1163
Query: 1236 KVK 1238
K K
Sbjct: 1164 KAK 1166
>gi|357157005|ref|XP_003577650.1| PREDICTED: uncharacterized protein LOC100846453 [Brachypodium
distachyon]
Length = 1180
Score = 859 bits (2220), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 579/1264 (45%), Positives = 770/1264 (60%), Gaps = 138/1264 (10%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNK---Q 64
L LKKELT +RKA LRDP T SSW+ P+SS + + I N+N+
Sbjct: 14 LHLKKELTALRKARFLRDPETCSSWRGPMSSRSCMTTS-----------SIINHNEIVGN 62
Query: 65 LVDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSV 124
L ++ ++ K K V+L NW+ + S S + D+ E + S+
Sbjct: 63 LTQKNMEPAVVPPKSEKKRKNVYLYNWRQHSNKSSESG--------MKFDEGERQASADW 114
Query: 125 -IESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMA------A 177
+ES S N DS+SD L SI+ + +N TP + +
Sbjct: 115 GLESPCIS-----NVMDSRSDICL--EVPVSIYSVQGSN---SGTPVRRTVRRVKRSSFS 164
Query: 178 KRKSKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSG- 236
K+ + R+ T+S K + L NS EQS+DTE Y + + G
Sbjct: 165 KKGAMRNSTVS--------KLLDLHVNSG----------EQSEDTETYSEDNELLQKGGY 206
Query: 237 ----ASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGS 292
SPL + S + SKLLK R+E SS+S TP +STSSY RY RNPST+GS
Sbjct: 207 FSRSTSPLFAASGCLS-SSNPSKLLKMARREGSSFS-CTP-VSTSSYYRYRGRNPSTVGS 263
Query: 293 WDATTASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKG 352
WDATTA+ D D + Q G+P YWSKR+ KH+G SC SPSLSDTLRRKG
Sbjct: 264 WDATTAASIDEDGL--NQSAQSRSQRFGLP-YWSKRS-KHKGSERSC-SPSLSDTLRRKG 318
Query: 353 SSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
SS+LCGSQT++ RR+ SS SN+ +S+QG PLL GD S + D +S
Sbjct: 319 SSLLCGSQTIH--RRKRSSGSNRCGYLKKSSQGE-PLL---GDSCHFSYSSFDSASDGVS 372
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDE 472
T FGELDLEALSRLDGRRWSS C+SQDG +AL + + + RSLSQKY+P + E
Sbjct: 373 TIFGELDLEALSRLDGRRWSS-CKSQDG---IALPVSGSDLAVSDKRSLSQKYRPRSYHE 428
Query: 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532
++GQN V+QSL N I R RIAP YLF GPRGTGKTS A+IFSAAL+CVA + KPCG C
Sbjct: 429 IVGQNFVIQSLTNAIIRERIAPAYLFHGPRGTGKTSVARIFSAALSCVANGENKPCGICT 488
Query: 533 ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT 592
EC DF +G N +EVD +N+KG++R+R +++++ A + S R+KVFV+DECH++ SK
Sbjct: 489 ECTDFFTGNGTNLIEVDASNRKGINRIRQLIENIPAS--ATSSRYKVFVVDECHMVSSKV 546
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
W AF+KFL+EP RVVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI+ +EN
Sbjct: 547 WSAFMKFLDEPLPRVVFIFITIDPENIPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKEN 606
Query: 653 LNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712
L++E ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+A
Sbjct: 607 LDIELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIA 666
Query: 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------IGGRSLTEA 763
MSSDTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T+A
Sbjct: 667 MSSDTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGEGIGGRNITDA 726
Query: 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEE 823
ELERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS H ++TQS SS ++S++TT +
Sbjct: 727 ELERLQQALKILSDAEKQIRLSSERATWFTAALLQLGSGHDSEVTQSRSSSKKSAKTTSD 786
Query: 824 DPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSY----S 879
RE+ + S P + + + AS +G L SR+ + + S
Sbjct: 787 AVLEAVRESSASRTTSHPLFTIRGSRRTASGHSTPHG----LASSSSRLRPNENLIYGES 842
Query: 880 KPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGK 939
+ + L D+ + S + I+ + S+ L +IW CIE+CHSKTL+QLL HGK
Sbjct: 843 RSADRVLPDSAQTSNSDDQPIIIGS------SDNLVKIWRNCIEKCHSKTLQQLLSDHGK 896
Query: 940 LLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS-- 997
L SI E E L+A++AF D IKSRA+RF+SSI NS+ETVLR NVEV + L+P+ AS
Sbjct: 897 LASIKECEGYLLAFIAFEDSTIKSRAQRFVSSIRNSMETVLRCNVEVIVGLMPEFLASRL 956
Query: 998 -IHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFN 1056
+ G+ ++ + T + ER + L Y S++I N+ + S +
Sbjct: 957 KLEVGMDEKVESDVLSCLTNS--ERRKEILNPPRCSGY----SEEIEKNLEKCSSASAAG 1010
Query: 1057 ELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESI-IREQRLETAWLQATE 1115
G+F+ + +GN+E+ T+G QE+ + R + + I EQRLE+AWL+A E
Sbjct: 1011 ---GEFRRD---------ITEGNTEMRRTRG--QEVLVGRSKPVTIEEQRLESAWLEAVE 1056
Query: 1116 KGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRV 1175
K PG +RPEKNQV+PQ Q H +S +++ + S+ + +L+ LK LK+++
Sbjct: 1057 KHTPG----VRPEKNQVVPQIG-GGQYHRKSSMATVVPSRNIDKDLSNGLKALKISDSHG 1111
Query: 1176 LKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKK 1234
+K +N + + I PSLLH ++ N E+ ESG A GC GLF CW K K+
Sbjct: 1112 PQKGQNVQIENGFVISPSLLHSNNESANCDNESVVSESG--APGCHGLFPCWKTDK-SKR 1168
Query: 1235 GKVK 1238
K K
Sbjct: 1169 NKAK 1172
>gi|357154954|ref|XP_003576959.1| PREDICTED: uncharacterized protein LOC100826587 [Brachypodium
distachyon]
Length = 1204
Score = 824 bits (2129), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 571/1271 (44%), Positives = 755/1271 (59%), Gaps = 160/1271 (12%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAA--VAAASASGSAWKINNNNKQL 65
L L+KELT +RKA L+DP T S+W+SPLSS +A + + + GS L
Sbjct: 14 LHLRKELTALRKARFLQDPETCSTWRSPLSSRSPVATSNIIHGSEVGGS----------L 63
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
+ S K+V+L NW+ + S S + D+++ + E SS
Sbjct: 64 ASKHTESSSAQPKSEKTSKKVYLYNWRQYSNKSSESGIKL--DEELPANFKEIPCSS--- 118
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRKSKRHK 185
NG SK +T L + +SI+ + + + TP KR ++R +
Sbjct: 119 -----------NGVRSKRETCL--DIPTSIYSNQSS---TSCTPV-------KRVARRRR 155
Query: 186 TLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNS--EDFRKYSG-----AS 238
LS QK I ++ L +S Q++DTE+ CNS ++ + G S
Sbjct: 156 GLSS------QKGTIRNPTTSELLDIHIKSGNQTEDTEN-CNSKSQELFQEGGLFSHLTS 208
Query: 239 PLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTA 298
PL + S + SKLLK R++ SS+S TP +STSSY R+ N ST+GSW AT+
Sbjct: 209 PLFAGCGCVS-SSNPSKLLKMDRRDGSSFS-CTP-VSTSSYYRHGRGNNSTVGSWTATSF 265
Query: 299 SLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCG 358
D D++ + L RQ +PC SKR KH+G GS SPSLSDTLRRKGSS+LCG
Sbjct: 266 ---DGDES--NQSALWRRQRSRVPCNSSKRG-KHKGSRGSNYSPSLSDTLRRKGSSLLCG 319
Query: 359 SQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGEL 418
SQT+ +R SS S K A +SAQG +PLL GD S S DELSTN GEL
Sbjct: 320 SQTLRSKKR--SSASMKWVHAKKSAQG-MPLL---GDSCDFGSSSFDSSSDELSTNVGEL 373
Query: 419 DLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNI 478
DLEALSRLDGRRWSS C+SQDG+EI ++ + + RSLSQKY+P F E++GQ+I
Sbjct: 374 DLEALSRLDGRRWSS-CKSQDGIEIAVHAADQ---AMSDKRSLSQKYRPSIFSEIVGQDI 429
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538
VVQSL N+I R RIAP YL QGPRGTGKTS A+IFSAAL+C AT KPCG C+EC +F
Sbjct: 430 VVQSLSNSIIRERIAPAYLLQGPRGTGKTSVARIFSAALSCAATGDNKPCGTCKECTEFF 489
Query: 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA-SPRFKVFVIDECHLLPSKTWLAFL 597
SG N +EVD +N+K ++R++++L+++ PSA S R+KVFV+DECH++ SK W AF+
Sbjct: 490 SGNGINLIEVDASNRKSINRIKHLLENIP---PSATSSRYKVFVVDECHMVSSKVWSAFV 546
Query: 598 KFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEP 657
KFL+E RVVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI +ENL+VE
Sbjct: 547 KFLDEQLPRVVFIFITIDPNNLPRAVISRCQKYIFSKIKDIDIVCRLRKICMKENLDVEL 606
Query: 658 DALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDT 717
ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMSSDT
Sbjct: 607 AALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSSDT 666
Query: 718 AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELER 767
AETVKR+RELMDSG+DP+ LMSQLA LIMDIIAGTY IGGRSLT ELER
Sbjct: 667 AETVKRSRELMDSGIDPIALMSQLAGLIMDIIAGTYKLADSTCNGVGIGGRSLTAGELER 726
Query: 768 LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSS 827
L+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS HS ++ Q +S + ++ + +
Sbjct: 727 LQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHSSNMNQPRNSTGEHPKSANDAVTE 786
Query: 828 TSREAV-------------VYKRMSGP-----QYMPQNAVSPASLREPVNGNSRHLGEVL 869
RE+ V K+ P Q PQ A+S S R +NG S + GE
Sbjct: 787 AGRESSSSRTASNSLSAFGVSKKTLDPKINSGQSSPQ-ALSSYSSRPRLNGISAY-GECR 844
Query: 870 SRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKT 929
S Y++ + + Q + G NS+ L +IW +CIE CHSK
Sbjct: 845 SVDRIRQDYTEMN---------ICSEQRALVTG-------NSDNLAQIWMRCIENCHSKI 888
Query: 930 LKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRII 989
L+QLL HGKL+S + E IA++AF D I SR +RFLSSITNS+ETVLR NVEVR+
Sbjct: 889 LQQLLFDHGKLVSTRQCEGRTIAFIAFEDRGIMSRVQRFLSSITNSMETVLRCNVEVRVG 948
Query: 990 LLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARK 1049
LL + I G+ E L++ E+ CS S+SD + +N +R+
Sbjct: 949 LLHE---LISAGLILEAVPKLRRAESDVLS-------CS------SNSDRLRGALNTSRR 992
Query: 1050 VSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIE-SIIREQRLET 1108
S +E++ + + ++S +G E+P Q + S++ EQRLE+
Sbjct: 993 -SLDYSDEVKRELG-----------LQSASRSVNSARG--LEVPTQISKTSMVDEQRLES 1038
Query: 1109 AWLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKIL 1168
AWLQA EK PG + RP+K+QVL Q + +S ++ + S Q +++L E+K L
Sbjct: 1039 AWLQAVEKYTPGMISKSRPDKDQVLTQ-GVGSPYQRKSSMALVVPSSQADEDLAHEIKAL 1097
Query: 1169 KLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWN 1227
K+ + +KD ++ +N I PS LH +M N E+ E G GC GLF CW
Sbjct: 1098 KIVDSYGSRKDHR-EQCQNDTISPSKLHGIDYMENCDNESMCSEPGRP--GCHGLFRCWR 1154
Query: 1228 NTKPHKKGKVK 1238
KP K+ +VK
Sbjct: 1155 TQKP-KRLQVK 1164
>gi|115487814|ref|NP_001066394.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|77553354|gb|ABA96150.1| ATPase, AAA family protein, expressed [Oryza sativa Japonica Group]
gi|113648901|dbj|BAF29413.1| Os12g0209300 [Oryza sativa Japonica Group]
gi|125578827|gb|EAZ19973.1| hypothetical protein OsJ_35564 [Oryza sativa Japonica Group]
Length = 1174
Score = 820 bits (2117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 549/1241 (44%), Positives = 739/1241 (59%), Gaps = 156/1241 (12%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVD 67
L L+KELT +RKA LRDP T+S+W+SPL S R LAAA S N +
Sbjct: 14 LHLRKELTALRKARFLRDPETSSTWRSPLDS-RPLAAASNIVHNS-------NGVGDSIA 65
Query: 68 EDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIES 127
+ S K+K+V+L NW+ + S S + D+DI+++ +
Sbjct: 66 PKHTESPTPSKGEKKQKKVYLYNWRQYSNKSSESGMKL--DEDINLESPHNS-------- 115
Query: 128 VDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRKSKRHKTL 187
NG KS+ C+D + + KR ++R + L
Sbjct: 116 ---------NGVGLKSNA------------CQDDPVNIYNFQSSTSCTPIKRVARRSRVL 154
Query: 188 SDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPLLLKLKHK 247
L++ AR+ A L D V ++ TED NSE SPL
Sbjct: 155 ---LSKKGT-----ARDPAVSKL-LDLHVNSTEQTEDTENSEVGYFSRPTSPLFAACGCV 205
Query: 248 NWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASLNDNDDAM 307
+ S++S +LLK GR+E SS+S TP +ST SY ++ N STIGSWD TA+ D D++
Sbjct: 206 SASNTS-RLLKVGRREGSSFS-CTP-ISTRSYYKHGRANSSTIGSWDGRTATSFDGDESN 262
Query: 308 DDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRR 367
L R +P Y SKR K +G S SPSLSD LRRKGS +LCGSQT++ R+
Sbjct: 263 QSTLWRSRRSH--VPGYSSKRN-KCKGSKRSY-SPSLSDILRRKGSGLLCGSQTLH--RK 316
Query: 368 RSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDD-ELSTNFGELDLEALSRL 426
+ S S K + SA G+ L DG + S ELSTN GELDLEALSRL
Sbjct: 317 KRSFGSLKWGHSKTSAHGMSLL-----DGSCDFGSSSFDSSSDELSTNVGELDLEALSRL 371
Query: 427 DGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNT 486
DGRRWSS C+SQDG++ A++G + + + RSLSQKY+P F E++GQ+IV QSL N
Sbjct: 372 DGRRWSS-CKSQDGVD-PAVHGADL--AMADRRSLSQKYRPKLFSEIVGQHIVAQSLSNA 427
Query: 487 ISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546
I+R +IAP YLFQGPRGTGKTSTA+IFS L+C+A + KPCG C+EC DF+SG N +
Sbjct: 428 ITREKIAPAYLFQGPRGTGKTSTARIFSMGLSCLAPGENKPCGICKECTDFLSGNGTNLI 487
Query: 547 EVDGTNKKGLDRVRYILKHLSAGLPSA-SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
EVD +N+K ++R++ +L+++ PSA S R+K+FV+DECH++ SK W AF+KFL+EP
Sbjct: 488 EVDASNRKSINRIKNLLENIP---PSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLP 544
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
RVVF+FIT D DN+PR++ SRCQKY+F+KIKD DIV RLR+I +ENL+VE ALDLIAL
Sbjct: 545 RVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDIVCRLRRICVKENLDVELAALDLIAL 604
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR 725
N+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMSSDTAETVKR+R
Sbjct: 605 NSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSSDTAETVKRSR 664
Query: 726 ELMDSGVDPMVLMSQLASLIMDIIAGTY----------TIGGRSLTEAELERLKHALKLL 775
ELMDSG+DPM LMSQLA LIMDIIAGTY +GGRSLT+ ELERL+ ALK+L
Sbjct: 665 ELMDSGIDPMALMSQLAGLIMDIIAGTYKLADSTANDMAVGGRSLTDGELERLQQALKIL 724
Query: 776 SEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAV-- 833
S+AEKQ+RLSSER TWFTA LLQL HS ++ Q+ SS + ++ + + RE+
Sbjct: 725 SDAEKQIRLSSERSTWFTAALLQLSCGHSSEMNQARSSTTECHKSMNDAVTEAGRESSSS 784
Query: 834 -----------VYKRMSGPQYM-----PQNAVSPASLREPVNGNSRHLGEVLSRIDGHNS 877
V K++ P+ PQ A++ S R +NGN + GE +S
Sbjct: 785 RAASHSISAFGVSKKLLDPKATSLHSSPQ-ALASHSSRSRLNGNFAYGGECMS------- 836
Query: 878 YSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
+ L+D+ +Q N ++ N E L IW +CIE CHSKTL+QLL H
Sbjct: 837 ----ADRFLQDS-----TQRSNYSEQKVLVNGNLESLAHIWMRCIENCHSKTLQQLLFDH 887
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS 997
GKL+ + + E ++A++AF D I+SRAERFLSSITNSIETVLR VEVR+ LLPD AS
Sbjct: 888 GKLVCVRQCEGCVLAFIAFEDSSIRSRAERFLSSITNSIETVLRCTVEVRMGLLPDFIAS 947
Query: 998 IHHGISNELPKGLKKTE------TTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVS 1051
G+++E+ +++ E ++ + +G S+ N +YSD +V
Sbjct: 948 ---GLTSEMGPNVRRAESDVLSCSSNSDRLKGTLNTSSRNFDYSD------------EVK 992
Query: 1052 RGSFNELEG-KFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAW 1110
+G LE KF D S NS G+ + M +I S+I EQRLE+AW
Sbjct: 993 KG----LEQFKFASAGDERLQSASVTSVNS------GKTKATHMSKI-SMIDEQRLESAW 1041
Query: 1111 LQATEKGAPGSLGHLRPEKNQVLPQ--EDIYRQNHMESLLSSGLSSQQWEDELNQELKIL 1168
LQA EK PG + RP+++QV+PQ R++ M ++ SG Q +++L+ +K +
Sbjct: 1042 LQAAEKHTPGMVNQTRPDRHQVVPQIVSPYERRSSMALVVPSG----QEDEDLSHGIKAM 1097
Query: 1169 KLNEDRVLKKDENGKKGENYPILPSLLH-DSSFMGNFSKEN 1208
K+ + ++KD+NG+ + PS LH D +M N KE+
Sbjct: 1098 KIVDSYGVQKDQNGRNVNRNVVSPSKLHSDDYYMENCDKES 1138
>gi|413916697|gb|AFW56629.1| hypothetical protein ZEAMMB73_394019 [Zea mays]
Length = 1174
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 561/1279 (43%), Positives = 745/1279 (58%), Gaps = 155/1279 (12%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVD 67
L L+KELT ++KA L+DP T S+W+SPLSS RSL A G I++N L
Sbjct: 14 LHLRKELTALQKARCLQDPDTCSTWRSPLSS-RSLVATSRITYNGG----ISSN---LAP 65
Query: 68 EDNNVSINNGNVNGKEKRVFLCNWK-NQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIE 126
+ N N + K ++V+L NW+ N SSE+ + +D+D + S +
Sbjct: 66 KHNESPCAPPNTDKKRRKVYLYNWRQNSYKSSESG---------MKIDEDVKQPSGDL-- 114
Query: 127 SVDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRK---SKR 183
S+D NG SK D YL + +SI+ + + + TP + +A +R SK+
Sbjct: 115 SLDSPCKS--NGVKSKGDAYL--DPPASIYNVQSS---TSCTPVKR--IARRRNGVLSKK 165
Query: 184 HKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDF----RKY--SGA 237
+ ++ + Q+ S E S+DTE+ CNSE R Y A
Sbjct: 166 GAVRNQAIPKLSDLQV--------------NSGEPSEDTEN-CNSEALEILRRGYLSHPA 210
Query: 238 SPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATT 297
SPL + S + SKLLK GR+E SS+S TP +STSSY R+V RN ST+GSWDA T
Sbjct: 211 SPLFAACGCVS-SSNPSKLLKIGRREGSSFS-CTP-VSTSSYYRHVRRNTSTVGSWDART 267
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
A+ D D++ + + Q +PCY SKR KH+G GS SPSLS LRRKGSS++C
Sbjct: 268 ATSLDGDES--NQSAVLRSQRSHVPCYVSKRR-KHQGSEGSNYSPSLSAILRRKGSSLIC 324
Query: 358 GSQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGE 417
GSQTM+ +++ S S K + +SAQG +PLL N+ S S D+LSTN GE
Sbjct: 325 GSQTMH--KKKKSFGSMKWAHSKKSAQG-MPLLGNSC---DFGSSSFDSSSDDLSTNIGE 378
Query: 418 LDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQN 477
LD+EA SRLDG+RWSS CRSQDG+++ + E + RSLSQKY+P F E++ QN
Sbjct: 379 LDMEASSRLDGKRWSS-CRSQDGMDLSVHCADLHES---DPRSLSQKYRPRAFPEIVSQN 434
Query: 478 IVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537
I VQSL N I+R RIAP YLFQGPRGTGKTSTA+IFSAALNC+ T KPCG C C DF
Sbjct: 435 IAVQSLSNAITRERIAPAYLFQGPRGTGKTSTARIFSAALNCLTTGDNKPCGVCNHCTDF 494
Query: 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP--RFKVFVIDECHLLPSKTWLA 595
SGK+ N EVD +N+K + I+KHL LP ++P R+KVFV+DECH++PSK W A
Sbjct: 495 FSGKASNIKEVDASNRKSIG----IIKHLLENLPPSAPLSRYKVFVVDECHMIPSKLWSA 550
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV 655
F+KFL+EP VVFIFIT D +NVPR++ SRCQKY+F+KIKD D V RLRKI +ENL+V
Sbjct: 551 FMKFLDEPFPYVVFIFITIDPNNVPRAVVSRCQKYVFSKIKDIDTVCRLRKICVKENLDV 610
Query: 656 EPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSS 715
E ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMS
Sbjct: 611 ELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSG 670
Query: 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-----------TIGGRSLTEAE 764
DTAETVKR+RELMDSG DPM LMSQLA LIMDIIAGTY +GGRSLTEAE
Sbjct: 671 DTAETVKRSRELMDSGTDPMALMSQLAGLIMDIIAGTYKLADVACCNGSAVGGRSLTEAE 730
Query: 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEED 824
LERL+ ALK+LS+AEKQ+ LSSER TWFTA LLQLG HS D+ Q S ++ + +
Sbjct: 731 LERLQQALKILSDAEKQISLSSERPTWFTAALLQLGCGHSSDVNQQKGSTQEHHKVANDA 790
Query: 825 PSSTSREA---VVYKRMSG----PQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNS 877
S +RE+ +S + + +S S + + +S L R++ +
Sbjct: 791 MSEIARESSSRTFSHSLSAFGISKRTLDSKTISVHSSPQVLASHSSRL-----RLNDNLV 845
Query: 878 YSKPSHSRLKDAGALAVSQ-NGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQV 936
Y + R D L +Q NGN + S+ L ++W +CIE CHSKTL+ LL
Sbjct: 846 YGE---CRSVDRVPLNSNQLNGNCSQQRALVNGISDSLAQVWIRCIENCHSKTLQHLLLD 902
Query: 937 HGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI---ILLPD 993
HGKL+SI + E A++A D IKSRA+RFLSSITNS+ETVL+ NVEV+I L D
Sbjct: 903 HGKLVSIRQFEGHATAFIAIEDCGIKSRAQRFLSSITNSLETVLKCNVEVKIGPLAELMD 962
Query: 994 GEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRG 1053
GE ++ G +++ E+ CS+ +D
Sbjct: 963 GEVTLEAG------PNVRRYESDVLS-------CSSNSD--------------------- 988
Query: 1054 SFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRI-ESIIREQRLETAWLQ 1112
+ KG D S + E+ + K E+P+Q E I +QRLE+AWLQ
Sbjct: 989 -------RLKGALDSRRSSGHPDEVKKELETYK----EVPIQTTKEPTIDDQRLESAWLQ 1037
Query: 1113 ATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNE 1172
TEK PG + +++QVL Q Q+ +S +S + S +++L +++ LK+ +
Sbjct: 1038 VTEKHTPGLVDQALHDQHQVLSQFS-GNQHQRKSSMSLVVPSSHVDEDLAHQIEALKIVD 1096
Query: 1173 DRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKP 1231
+K ++G+ + + PS +H M + KE+ E G C GLF CW + KP
Sbjct: 1097 SYGSQKHQSGRSESGFSVSPSRMHRKDDMVDCDKESVCSELGKSR--CHGLFPCWKSQKP 1154
Query: 1232 HKKGKVKGTPVRSRKGGHF 1250
+ V+S G
Sbjct: 1155 RGVKTKRHMRVKSSSSGRL 1173
>gi|125536092|gb|EAY82580.1| hypothetical protein OsI_37801 [Oryza sativa Indica Group]
Length = 1174
Score = 816 bits (2108), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/1241 (44%), Positives = 738/1241 (59%), Gaps = 156/1241 (12%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVD 67
L L+KELT +RKA LRDP T+S+W+SPL S R LAAA S N +
Sbjct: 14 LHLRKELTALRKARFLRDPETSSTWRSPLDS-RPLAAASNIVHNS-------NGVGDSIA 65
Query: 68 EDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIES 127
+ S K+K+V+L NW+ + S S + D+DI+++ +
Sbjct: 66 PKHTESPTPSKGEKKQKKVYLYNWRQYSNKSSESGMKL--DEDINLESPHNS-------- 115
Query: 128 VDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRKSKRHKTL 187
NG KS+ C+D + + KR ++R + L
Sbjct: 116 ---------NGVGLKSNA------------CQDDPVNIYNFQSSTSCTPIKRVARRSRVL 154
Query: 188 SDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFRKYSGASPLLLKLKHK 247
L++ AR+ A L D V ++ TED NS+ SPL
Sbjct: 155 ---LSKKGT-----ARDPAVSKL-LDLHVNSTEQTEDTENSQVGYFSRPTSPLFAACGCV 205
Query: 248 NWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTASLNDNDDAM 307
+ S++S +LLK GR+E SS+S TP +ST SY ++ N STIGSWD TA+ D D++
Sbjct: 206 SASNTS-RLLKVGRREGSSFS-CTP-ISTRSYYKHGRANSSTIGSWDGRTATSFDGDESN 262
Query: 308 DDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRR 367
L R +P Y SKR K +G S SPSLSD LRRKGS +LCGSQT++ R+
Sbjct: 263 QSTLWRSRRSH--VPGYSSKRN-KCKGSKRSY-SPSLSDILRRKGSGLLCGSQTLH--RK 316
Query: 368 RSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDD-ELSTNFGELDLEALSRL 426
+ S S K + SA G+ L DG + S ELSTN GELDLEALSRL
Sbjct: 317 KRSFGSLKWGHSKTSAHGMSLL-----DGSCDFGSSSFDSSSDELSTNVGELDLEALSRL 371
Query: 427 DGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNT 486
DGRRWSS C+SQDG++ A++G + + + RSLSQKY+P F E++GQ+IV QSL N
Sbjct: 372 DGRRWSS-CKSQDGVD-PAVHGADL--AMADRRSLSQKYRPKLFSEIVGQHIVAQSLSNA 427
Query: 487 ISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546
I+R +IAP YLFQGPRGTGKTSTA+IFS L+C+A + KPCG C+EC DF+SG N +
Sbjct: 428 ITREKIAPAYLFQGPRGTGKTSTARIFSMGLSCLAPGENKPCGICKECTDFLSGNGTNLI 487
Query: 547 EVDGTNKKGLDRVRYILKHLSAGLPSA-SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
EVD +N+K ++R++ +L+++ PSA S R+K+FV+DECH++ SK W AF+KFL+EP
Sbjct: 488 EVDASNRKSINRIKNLLENIP---PSATSSRYKLFVVDECHMVSSKLWSAFMKFLDEPLP 544
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
RVVF+FIT D DN+PR++ SRCQKY+F+KIKD DIV RLR+I +ENL+VE ALDLIAL
Sbjct: 545 RVVFVFITIDPDNLPRAVISRCQKYVFSKIKDIDIVCRLRRICVKENLDVELAALDLIAL 604
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR 725
N+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMSSDTAETVKR+R
Sbjct: 605 NSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSSDTAETVKRSR 664
Query: 726 ELMDSGVDPMVLMSQLASLIMDIIAGTY----------TIGGRSLTEAELERLKHALKLL 775
ELMDSG+DPM LMSQLA LIMDIIAGTY +GGRSLT ELERL+ ALK+L
Sbjct: 665 ELMDSGIDPMALMSQLAGLIMDIIAGTYKLADSTANDMAVGGRSLTGGELERLQQALKIL 724
Query: 776 SEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAV-- 833
S+AEKQ+RLSSER TWFTA LLQL HS ++ Q+ SS + ++ + + RE+
Sbjct: 725 SDAEKQIRLSSERSTWFTAALLQLSCGHSSEMNQARSSTTECHKSMNDAVTEAGRESSSS 784
Query: 834 -----------VYKRMSGPQYM-----PQNAVSPASLREPVNGNSRHLGEVLSRIDGHNS 877
V K++ P+ PQ A++ S R +NGN + GE +S
Sbjct: 785 RAASHSISAFGVSKKLLDPKATSLHSSPQ-ALASHSSRSRLNGNFAYGGECMS------- 836
Query: 878 YSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
+ L+D+ +Q N ++ N E L IW +CIE CHSKTL+QLL H
Sbjct: 837 ----ADRFLQDS-----TQRSNYSEQKVLVNGNLESLAHIWMRCIENCHSKTLQQLLFDH 887
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEAS 997
GKL+ + + E ++A++AF D I+SRAERFLSSITNSIETVLR VEVR+ LLPD AS
Sbjct: 888 GKLVCVRQCEGCVLAFIAFEDRSIRSRAERFLSSITNSIETVLRCTVEVRMGLLPDFIAS 947
Query: 998 IHHGISNELPKGLKKTE------TTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVS 1051
G+++E+ +++ E ++ + +G S+ N +YSD +V
Sbjct: 948 ---GLTSEMGPKVRRAESDVLSCSSNSDRLKGTLNTSSRNFDYSD------------EVK 992
Query: 1052 RGSFNELEG-KFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQRLETAW 1110
+G LE KF D S NS G+ + M +I S+I EQRLE+AW
Sbjct: 993 KG----LEQFKFASAGDERLQSASVTSVNS------GKTKATHMSKI-SMIDEQRLESAW 1041
Query: 1111 LQATEKGAPGSLGHLRPEKNQVLPQ--EDIYRQNHMESLLSSGLSSQQWEDELNQELKIL 1168
LQA EK PG + RP+++QV+PQ R++ M ++ SG Q +++L+ +K +
Sbjct: 1042 LQAAEKHTPGMVNQTRPDRHQVVPQIVSPYERRSSMALVVPSG----QEDEDLSHGIKAM 1097
Query: 1169 KLNEDRVLKKDENGKKGENYPILPSLLH-DSSFMGNFSKEN 1208
K+ + ++KD+NG+ + PS LH D +M N KE+
Sbjct: 1098 KIVDSYGVQKDQNGRNVNRNVVSPSKLHSDDYYMENCDKES 1138
>gi|218185516|gb|EEC67943.1| hypothetical protein OsI_35669 [Oryza sativa Indica Group]
Length = 860
Score = 750 bits (1937), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/891 (49%), Positives = 584/891 (65%), Gaps = 57/891 (6%)
Query: 366 RRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSR 425
RR+ SS S+K ++S+QG PLL ++ A SS + + DE+ST FGELDLEALSR
Sbjct: 3 RRKRSSGSSKCAYLTKSSQGT-PLL-DDSCHFAYSSFDS--TSDEVSTIFGELDLEALSR 58
Query: 426 LDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVN 485
LDGRRWSS C+SQDG +AL + + + RSLSQKY+P F+EL+GQ+ VVQSL N
Sbjct: 59 LDGRRWSS-CKSQDG---IALPMSGADHAVSDQRSLSQKYRPRSFNELVGQSFVVQSLNN 114
Query: 486 TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545
I R RIAP YLF GPRGTGKTS A+IFSAAL+CVA + KPCG C EC DF +G N
Sbjct: 115 AIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCVAIGENKPCGACMECTDFFTGNGINL 174
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+EVD +N+K ++R+R++++++ A + S R+KVFV+DECH++ SK W AF+KFL+EP
Sbjct: 175 IEVDASNRKSINRIRHLIENIPAS--ATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLP 232
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
RVVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI+ +ENL+VE ALDLIAL
Sbjct: 233 RVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKENLDVELAALDLIAL 292
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR 725
N+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMS+DTAETVKR+R
Sbjct: 293 NSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSADTAETVKRSR 352
Query: 726 ELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLL 775
ELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T+AELERL+ ALK+L
Sbjct: 353 ELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGGEGIGGRNITDAELERLQQALKIL 412
Query: 776 SEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVY 835
S+AEKQ+RLSSER TWFTA LLQLGS H+ ++ QS SS +QS++ T E RE+
Sbjct: 413 SDAEKQIRLSSERSTWFTAALLQLGSGHNSEMIQSRSSSKQSAKATSEIVMDAVRESSAS 472
Query: 836 KRMSGPQYMPQNAVSPASLREPVNGNSRHLG--EVLSRIDGHNSYSKPSHSRLKDAGALA 893
+ + P + + + LR +G+S G V SR+ +++ K R D
Sbjct: 473 RTTAHPLFTLRGSRKTLDLR-TASGHSSPQGVVSVSSRMRANDNL-KHGECRSVDRVLQD 530
Query: 894 VSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAY 953
+Q N +T +S+ L IW +CI+ CHSKTLKQLL HGKL S+ + IA+
Sbjct: 531 SAQRSNSSELRPMTNVSSDNLARIWRKCIDNCHSKTLKQLLCDHGKLASVKDYGGYYIAF 590
Query: 954 VAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNELPKGLKKT 1013
+AF DIKSRA+RF SSI NS+ETVLR NVEVRI L+P+ L GLK+
Sbjct: 591 IAFEGSDIKSRAQRFTSSIRNSMETVLRCNVEVRIGLMPE-----------LLAGGLKRE 639
Query: 1014 ETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKGEDDHSNCSP 1073
E + CS +D + +N + ++ + +LE KF
Sbjct: 640 EDLDERDEFDALSCSTNSDRLKGIRNPSRNLNYSEEIEK----KLE-KFSCASASGGLQS 694
Query: 1074 LFADGNSEISSTKGRRQEIPMQRIESI-IREQRLETAWLQATEKGAPGSLGHLRPEKNQV 1132
+GN+ + T+G+ E+ +++ +++ + EQRLE+AWLQA EK APG L +RPE+NQV
Sbjct: 695 CTTEGNTGMHRTRGK--EVSVEQAKAVTVEEQRLESAWLQAVEKHAPGILNQMRPERNQV 752
Query: 1133 LPQ---EDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKDENGKKGENYP 1189
+P+ E +R +++ S+Q + EL+ LK L + + +NG+ Y
Sbjct: 753 VPRISGEQYHRMPETDTV----FPSRQVDKELSNGLKSLNIGSHGL---RQNGQMENGYA 805
Query: 1190 ILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKGKVKG 1239
I PSLLH ++ + N E+ E G A GC GLF CW T+ K+ K KG
Sbjct: 806 ISPSLLHSNNHLANCDNESVVSEPG--APGCHGLFPCW-KTEKSKRRKAKG 853
>gi|222615775|gb|EEE51907.1| hypothetical protein OsJ_33507 [Oryza sativa Japonica Group]
Length = 905
Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 443/900 (49%), Positives = 590/900 (65%), Gaps = 64/900 (7%)
Query: 366 RRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSR 425
RR+ SS S+K ++S+Q PLL ++ A SS + + DE+ST FGELDLEALSR
Sbjct: 3 RRKRSSGSSKCAYLTKSSQST-PLL-DDSCHFAYSSFDS--ASDEVSTIFGELDLEALSR 58
Query: 426 LDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVN 485
LDGRRWSS C+SQDG +AL + + + RSLSQKY+P F+EL+GQ+ VVQSL N
Sbjct: 59 LDGRRWSS-CKSQDG---IALPMSGADHAVSDQRSLSQKYRPRSFNELVGQSFVVQSLNN 114
Query: 486 TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545
I R RIAP YLF GPRGTGKTS A+IFSAAL+CVA + KPCG C EC DF +G N
Sbjct: 115 AIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCVAIGENKPCGACMECTDFFTGNGINL 174
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+EVD +N+K ++R+R++++++ A + S R+KVFV+DECH++ SK W AF+KFL+EP
Sbjct: 175 IEVDASNRKSINRIRHLIENIPAS--ATSSRYKVFVVDECHMVSSKVWSAFMKFLDEPLP 232
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
RVVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRKI+ +ENL+VE ALDLIAL
Sbjct: 233 RVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRKIAVKENLDVELAALDLIAL 292
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR 725
N+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL+LLE+AMS+DTAETVKR+R
Sbjct: 293 NSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLLDLLEIAMSADTAETVKRSR 352
Query: 726 ELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLL 775
ELMDSGVDPM LMSQLA LIMDIIAGTY IGGR++T+AELERL+ ALK+L
Sbjct: 353 ELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGGEGIGGRNITDAELERLQQALKIL 412
Query: 776 SEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVY 835
S+AEKQ+RLSSER TWFTA LLQLGS H+ ++ QS SS +QS++ T E RE+
Sbjct: 413 SDAEKQIRLSSERSTWFTAALLQLGSGHNSEMIQSRSSSKQSAKATSEIVMDAVRESSAS 472
Query: 836 KRMSGPQYMPQNAVSPASLREPVNGNSRHLG--EVLSRIDGHNSYSKPSHSRLKDAGALA 893
+ + P + + + LR +G+S G V SR+ +++ K R D
Sbjct: 473 RTTAHPLFTLRGSRKTLDLRT-ASGHSSPQGVVSVSSRMRANDNL-KHGECRSVDRVLQD 530
Query: 894 VSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAY 953
+Q N +T +S+ L IW +CI+ CHSKTLKQLL HGKL S+ + IA+
Sbjct: 531 SAQRSNSSELRPMTNVSSDNLARIWRKCIDNCHSKTLKQLLCDHGKLASVKDYGGYYIAF 590
Query: 954 VAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNELPKGLKKT 1013
+AF DIKSRA+RF SSI NS+ETVLR NVEVRI L+P+ L GLK+
Sbjct: 591 IAFEGSDIKSRAQRFTSSIRNSMETVLRCNVEVRIGLMPE-----------LLAGGLKRE 639
Query: 1014 ETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKGEDDHS---- 1069
E + CS +D + +N + ++ + +LE KF S
Sbjct: 640 EDLDERDEFDALSCSTNSDRLKGIRNPSRNLNYSEEIEK----KLE-KFSCASAASGGLQ 694
Query: 1070 NCSPLFADGNSEISSTKGRRQEIPMQRIESI-IREQRLETAWLQATEKGAPGSLGHLRPE 1128
+C+ +GN+ + T+G+ E+ +++ +++ + EQRLE+AWLQA EK APG L +RPE
Sbjct: 695 SCT---TEGNTGMHRTRGK--EVSVEQAKAVTVEEQRLESAWLQAVEKHAPGILNQMRPE 749
Query: 1129 KNQVLPQ---EDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNEDRVLKKDENGKKG 1185
+NQV+P+ E +R +++ S+Q + EL+ LK L + + +NG+
Sbjct: 750 RNQVVPRISGEQYHRMPETDTV----FPSRQVDKELSNGLKSLNIGSHGL---RQNGQME 802
Query: 1186 ENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF-CWNNTKPHKKGKVKGTPVRS 1244
Y I PSLLH ++ + N E+ E G A GC GLF CW T+ K+ K K P+++
Sbjct: 803 NGYAISPSLLHSNNHLANCDNESVVSEPG--APGCHGLFPCW-KTEKSKRRKKKACPLQT 859
>gi|242085200|ref|XP_002443025.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
gi|241943718|gb|EES16863.1| hypothetical protein SORBIDRAFT_08g006520 [Sorghum bicolor]
Length = 1074
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 520/1235 (42%), Positives = 691/1235 (55%), Gaps = 206/1235 (16%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVD 67
L L+KELT ++KA L+DP T S+W+SPLSS RSL A G I++N L
Sbjct: 11 LHLRKELTALQKARCLQDPDTCSTWRSPLSS-RSLVATSRITCNGG----ISSN---LAP 62
Query: 68 EDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVIES 127
+ N S N + K ++V+L NW+ S S + +D+D + S + S
Sbjct: 63 KLNESSCEPPNTDKKRRKVYLYNWRQNSCKSSESG--------MKIDEDVKQPSGEL--S 112
Query: 128 VDDSLSDARNGGDSKSDTYLGENRASSIFRCRDANLVSVATPAMKRAMAAKRKSKRHKTL 187
+D NG +SK D YLG +SI+ + + + TP KR ++R K
Sbjct: 113 LDSPCKS--NGVNSKGDAYLGP--PASIYNVQSS---TSCTPV-------KRIARRRKG- 157
Query: 188 SDSLTRYQQKQIILARNSAALGLGRD---ESVEQSDDTEDYCNSED---FRK---YSGAS 238
+L+R AA+ D S EQS+DTE+ CNSE F++ Y S
Sbjct: 158 ------------VLSRKGAAVSKLSDLQANSGEQSEDTEN-CNSETLEIFQRGYFYRPTS 204
Query: 239 PLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWDATTA 298
PL + S + SKLLK GR+E SS+S TP +STS+Y R+V RN ST+GSWDA TA
Sbjct: 205 PLFAACGCVS-SSNPSKLLKIGRREGSSFS-CTP-VSTSTYYRHVRRNTSTVGSWDARTA 261
Query: 299 SLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCG 358
+ D D++ + + Q +PCY SKR KHRG GS SPSLS LRRKGSS++CG
Sbjct: 262 TSFDGDES--NQSAVLRSQRSHVPCYASKRR-KHRGSEGSNYSPSLSAILRRKGSSLICG 318
Query: 359 SQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGEL 418
SQTM+ +R S+ K + +SAQG +PLL N+ S S DELSTN GEL
Sbjct: 319 SQTMHKKKRSFGSM--KWAHSKKSAQG-MPLLGNSC---DFGSSSFDSSSDELSTNIGEL 372
Query: 419 DLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNI 478
D+EA SRLD +RWSS C+SQD +++ + + E + RSLSQKY+P F E++GQNI
Sbjct: 373 DMEASSRLDRKRWSS-CKSQDAMDLSVRSADLAES---DPRSLSQKYRPRAFPEIVGQNI 428
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538
QSL N I+R RIAP YLFQGPRGTGKTSTA+IFSAALNC+ T KPCG C +C DF
Sbjct: 429 AAQSLSNAIARERIAPAYLFQGPRGTGKTSTARIFSAALNCLTTGDNKPCGVCNQCTDFF 488
Query: 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP--RFKVFVIDECHLLPSKTWLAF 596
SGK N EVD +N+K + I+KHL LP ++P R+KVFV+DECH+ PSK W AF
Sbjct: 489 SGKGTNLKEVDASNRKSIS----IIKHLLENLPPSAPLSRYKVFVVDECHMTPSKLWSAF 544
Query: 597 LKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE 656
+KFL+EP RVVFIFIT D DN+PR++ SRCQKY+F+KIKD D V RLRKI +ENL+VE
Sbjct: 545 MKFLDEPFPRVVFIFITIDPDNLPRAVVSRCQKYVFSKIKDIDTVCRLRKICVKENLDVE 604
Query: 657 PDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+L
Sbjct: 605 LAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDL-------------------- 644
Query: 717 TAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-----------TIGGRSLTEAEL 765
LA LIMDIIAGTY +GGRSLTEAEL
Sbjct: 645 ------------------------LAGLIMDIIAGTYKLADVACCNGSAVGGRSLTEAEL 680
Query: 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDP 825
ERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLG HS D+ Q S ++ + T +
Sbjct: 681 ERLQQALKILSDAEKQIRLSSERPTWFTAALLQLGCGHSSDMNQQKCSTQEHHKLTNDAM 740
Query: 826 SSTSREA---VVYKRMSG----PQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSY 878
S +RE+ V +S + + VS S + + +S L R++ + Y
Sbjct: 741 SEIARESSSRAVSHSLSAFGISKRTIDTKTVSVHSSPQVIASHSSQL-----RLNDNLVY 795
Query: 879 SKPSHSRLKDAGALAVSQ-NGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVH 937
+ R D L +Q N N + S+ L ++W +CIE CHSKTL+QLL H
Sbjct: 796 GE---CRSVDRLPLNFNQLNDNCSQQMALVNGISDSLAQVWIRCIENCHSKTLQQLLIDH 852
Query: 938 GKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI---ILLPDG 994
GKL+SI ++E IA++AF D IKSRA+RFLSSITNSIETVL+ NVEV+I L DG
Sbjct: 853 GKLVSIRQLEGHAIAFIAFEDCSIKSRAQRFLSSITNSIETVLKCNVEVKIGPLAELMDG 912
Query: 995 EASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGS 1054
E ++ G + L SR S
Sbjct: 913 EITLEAGPNGTLD-------------------------------------------SRRS 929
Query: 1055 FNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRI-ESIIREQRLETAWLQA 1113
F+ + K + + N + S+ + R ++P+Q ES EQRLE+AWLQ
Sbjct: 930 FDHPDEVKKELETYRNTA----------SADERLRSKVPIQTSKESTNDEQRLESAWLQV 979
Query: 1114 TEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILKLNED 1173
++K PG + R +++QVL Q + Q +S +S + S +++L E++ LK+ +
Sbjct: 980 SDKHTPGLMNQERHDQHQVLSQF-VGNQYQRKSSMSLVVPSSHADEDLAHEIEALKIVDS 1038
Query: 1174 RVLKKDENGKKGENYPILPSLLHDSSFMGNFSKEN 1208
+K ++GK + I PS +H M + +E+
Sbjct: 1039 YGSQKRQSGKSENGFAISPSRMHKKDEMVDCDRES 1073
>gi|110738810|dbj|BAF01328.1| STICHEL [Arabidopsis thaliana]
Length = 634
Score = 707 bits (1824), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/632 (63%), Positives = 475/632 (75%), Gaps = 38/632 (6%)
Query: 7 RLQLKKELTQIRKAAR-LRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQL 65
+L LKKELTQIRKA R LRDPGTTSSWKSPL SSRS+A AS +G + ++ +
Sbjct: 11 KLHLKKELTQIRKAGRVLRDPGTTSSWKSPLDSSRSVALLETPASRNGGS----SSQFPI 66
Query: 66 VDEDNNVSINNGNVNGKEKRVFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
E + N GKEK+VFL NWK QKSSSE S +A+N ++ + ++D + + +
Sbjct: 67 RGESST------NRRGKEKKVFLYNWKTQKSSSEKSGLAKNGKEEEEEEEDASSWTQASV 120
Query: 126 ESVDDSLSDARNGGDSKSDTYLGENRASSI-FRCRDANLVSVATPAMKRAMAAKRKSKRH 184
DD SDARNGGDS Y E +++S+ FRCRD NL S M+++ K K
Sbjct: 121 NDDDDV-SDARNGGDS----YRREIQSASMGFRCRDTNLASQGVSKMRKSNVGSCKKKSK 175
Query: 185 KTLS----DSLTRYQQKQIILARNSAALGLGRDESVEQSDDTED-YCNSEDFRKYSGASP 239
K +S D L++YQ + I+ARN A SDDTE+ NSED RK +GASP
Sbjct: 176 KKISSSRLDCLSKYQPRDDIVARNCNA----------GSDDTEEELSNSEDLRKVTGASP 225
Query: 240 LLLKLKHKNWSHSSSKLLKGG-RKEDSSYSY-STPALSTSSYNRYVNRNPSTIGSWDATT 297
LLLKLK KNWS SSS+LL+ RKEDSS +Y STPALSTSSYN Y RNPST+GSWD TT
Sbjct: 226 LLLKLKQKNWSRSSSRLLRANNRKEDSSCTYNSTPALSTSSYNMYAVRNPSTVGSWDGTT 285
Query: 298 ASLNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILC 357
S+ND DD +DD+LDLPGRQGCGIPCYW+K+ KHRG C SCCSPS SDTLRR GSSILC
Sbjct: 286 TSVNDGDDELDDNLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILC 345
Query: 358 GSQTMY--HGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNF 415
GSQ++Y H R S S K+++A RSAQGVLPLL+ GDGR GSS+GTG SDDELSTN+
Sbjct: 346 GSQSVYRRHNRHSSGGYS-KQKIACRSAQGVLPLLSYGGDGRGGSSLGTGLSDDELSTNY 404
Query: 416 GELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEG-VLENIRSLSQKYKPIFFDELI 474
GELDLEA SRLDGRRWS+S RSQDGLE VAL+GEEEEG E IRS SQKY+P+FF+ELI
Sbjct: 405 GELDLEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPETIRSFSQKYRPMFFEELI 464
Query: 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534
GQ+IVVQSL+N + R RIAPVYLFQGPRGTGKTSTA+IFSAALNCVAT++ KPCGYC+EC
Sbjct: 465 GQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKEC 524
Query: 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWL 594
NDF+SGKS++F E+DG NKKG D+VRY+LK+L LP S +KVFVIDECHLLPSKTWL
Sbjct: 525 NDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWL 584
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
+FLKFLE P Q+VVFIFITTD++NVPR+IQSR
Sbjct: 585 SFLKFLENPLQKVVFIFITTDLENVPRTIQSR 616
>gi|62733734|gb|AAX95843.1| hypothetical protein LOC_Os11g13990 [Oryza sativa Japonica Group]
gi|77549593|gb|ABA92390.1| ATPase, AAA family protein [Oryza sativa Japonica Group]
Length = 1121
Score = 689 bits (1778), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/861 (48%), Positives = 555/861 (64%), Gaps = 95/861 (11%)
Query: 407 SDDELSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYK 466
+ DE+ST FGELDLEALSRLDGRRWSS C+SQDG +AL + + + RSLSQKY+
Sbjct: 287 ASDEVSTIFGELDLEALSRLDGRRWSS-CKSQDG---IALPMSGADHAVSDQRSLSQKYR 342
Query: 467 PIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTK 526
P F+EL+GQ+ VVQSL N I R RIAP YLF GPRGTGKTS A+IFSAAL+CVA + K
Sbjct: 343 PRSFNELVGQSFVVQSLNNAIIRERIAPAYLFHGPRGTGKTSAARIFSAALSCVAIGENK 402
Query: 527 PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECH 586
PCG C EC DF +G N +EVD +N+K ++R+R++++++ A + S R+KVFV+DECH
Sbjct: 403 PCGACMECTDFFTGNGINLIEVDASNRKSINRIRHLIENIPAS--ATSSRYKVFVVDECH 460
Query: 587 LLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRK 646
++ SK W AF+KFL+EP RVVFIFIT D +N+PR++ SRCQKY+F+KIKD DIV RLRK
Sbjct: 461 MVSSKVWSAFMKFLDEPLPRVVFIFITIDPENLPRAVISRCQKYMFSKIKDIDIVCRLRK 520
Query: 647 ISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLL 706
I+ +ENL+VE ALDLIALN+DGSLRDAETMLDQLSLLGK+IT SLVN+LVGVVSEEKLL
Sbjct: 521 IAVKENLDVELAALDLIALNSDGSLRDAETMLDQLSLLGKKITPSLVNDLVGVVSEEKLL 580
Query: 707 ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IG 756
+LLE+AMS+DTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY IG
Sbjct: 581 DLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLADPTCGGEGIG 640
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQ 816
GR++T+AELERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS H+ ++ QS SS +Q
Sbjct: 641 GRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSEMIQSRSSSKQ 700
Query: 817 SSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHN 876
S++ T E RE+ + + P + +LR G+ + L L GH+
Sbjct: 701 SAKATSEIVMDAVRESSASRTTAHPLF---------TLR----GSRKTLD--LRTASGHS 745
Query: 877 SYSKPSHSRLKDAGALAVSQ----NGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQ 932
S G ++VS N N+ CR+ +++ + AQ R +S L+
Sbjct: 746 S----------PQGVVSVSSRMRANDNLKHG---ECRSVDRVLQDSAQ---RSNSSELRP 789
Query: 933 LLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLP 992
+ + + E IA++AF DIKSRA+RF SSI NS+ETVLR NVEVRI L+P
Sbjct: 790 MTNDGVQTFN----EGYYIAFIAFEGSDIKSRAQRFTSSIRNSMETVLRCNVEVRIGLMP 845
Query: 993 DGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSR 1052
+ L GLK+ E + CS +D + +N + ++ +
Sbjct: 846 E-----------LLAGGLKREEDLDERDEFDALSCSTNSDRLKGIRNPSRNLNYSEEIEK 894
Query: 1053 GSFNELEGKFKGEDDHS----NCSPLFADGNSEISSTKGRRQEIPMQRIESI-IREQRLE 1107
+LE KF S +C+ +GN+ + T+G+ E+ +++ +++ + EQRLE
Sbjct: 895 ----KLE-KFSCASAASGGLQSCT---TEGNTGMHRTRGK--EVSVEQAKAVTVEEQRLE 944
Query: 1108 TAWLQATEKGAPGSLGHLRPEKNQVLPQ---EDIYRQNHMESLLSSGLSSQQWEDELNQE 1164
+AWLQA EK APG L +RPE+NQV+P+ E +R +++ S+Q + EL+
Sbjct: 945 SAWLQAVEKHAPGILNQMRPERNQVVPRISGEQYHRMPETDTV----FPSRQVDKELSNG 1000
Query: 1165 LKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLF 1224
LK L + + +NG+ Y I PSLLH ++ + N E+ E G A GC GLF
Sbjct: 1001 LKSLNIGSHGL---RQNGQMENGYAISPSLLHSNNHLANCDNESVVSEPG--APGCHGLF 1055
Query: 1225 -CWNNTKPHKKGKVKGTPVRS 1244
CW T+ K+ K K P+++
Sbjct: 1056 PCW-KTEKSKRRKKKACPLQT 1075
Score = 101 bits (251), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 107/310 (34%), Positives = 151/310 (48%), Gaps = 60/310 (19%)
Query: 8 LQLKKELTQIRKAARLRDPGTTSSWKSPLSSSRSLAAAVAAASASGSAWKINNNNKQLVD 67
L LKKELT +RKA LRDP T SSW+SPLSS + + IN N
Sbjct: 11 LHLKKELTALRKARFLRDPETCSSWRSPLSSKSFMTTSCV----------INPNEIGSNV 60
Query: 68 EDNNVSINNGNVNGKEKR--VFLCNWKNQKSSSETSAVARNDDDDIDVDDDEDEGSSSVI 125
++ G++KR V+L NW++ + S S I +DDD+ + S+
Sbjct: 61 SQKHIEPAAAPPKGEKKRKKVYLYNWRHHSNKSSESG--------IKLDDDDRQASA--- 109
Query: 126 ESVDDSLSDA--RNGGDSKSDTYLGENRASSIFRCRDAN---LVSVATPAMKRAMAAKRK 180
D SL NG DS+S+T G SI+ + +N V+ ++R+ +K+
Sbjct: 110 ---DCSLESPCISNGVDSRSET--GLEVPVSIYSVQGSNSGTPVTRTVRRVRRSSLSKKG 164
Query: 181 SKRHKTLSDSLTRYQQKQIILARNSAALGLGRDESVEQSDDTEDYCNSEDFR------KY 234
+ R+ T+S K + L NS EQS+DT++Y NSE+ +
Sbjct: 165 AIRNSTVS--------KLLDLHVNSG----------EQSEDTDNY-NSENHELLQKGGYF 205
Query: 235 SGASPLLLKLKHKNWSHSSSKLLKGGRKEDSSYSYSTPALSTSSYNRYVNRNPSTIGSWD 294
S ++ L S + SK LK R+E SS+S TP +STSSY RY RNPST+GSWD
Sbjct: 206 SHSTSPLFAAPGCLSSSNPSKFLKVPRREGSSFS-CTP-VSTSSYYRYRGRNPSTVGSWD 263
Query: 295 ATTASLNDND 304
TTA+ D D
Sbjct: 264 GTTAASLDED 273
>gi|147856455|emb|CAN80767.1| hypothetical protein VITISV_013864 [Vitis vinifera]
Length = 545
Score = 551 bits (1419), Expect = e-153, Method: Compositional matrix adjust.
Identities = 288/492 (58%), Positives = 362/492 (73%), Gaps = 23/492 (4%)
Query: 765 LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEED 824
++RLKHALKLLSEAEKQLR+SSER TWFTATLLQLGS SPD T SGSSRRQSS+TTE+D
Sbjct: 1 MDRLKHALKLLSEAEKQLRVSSERSTWFTATLLQLGSP-SPDPTLSGSSRRQSSKTTEDD 59
Query: 825 PSSTSREA-VVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSH 883
PSS SR+A +++K+ +MP+ + SP S+ + NS H G++LS +DG N +KP H
Sbjct: 60 PSSASRDATIIHKQKPNAHHMPRKSFSPISMPKSAEKNSTHQGDLLSLVDGFNFNAKPVH 119
Query: 884 SRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSI 943
S+ +++GA A S + ++GN + N++KL +IW +CIERCHSKTL+QLL HGKL+SI
Sbjct: 120 SQFRNSGASASSHDDVMMGNLVFRSINADKLDDIWERCIERCHSKTLRQLLHAHGKLVSI 179
Query: 944 SEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHH--- 1000
SE E L+AYVAF D DIK RAERFLSSITNSIE V+R NVEV+IILLPDGE S++
Sbjct: 180 SEAEGGLVAYVAFQDEDIKCRAERFLSSITNSIEIVMRSNVEVKIILLPDGEISMNMKAV 239
Query: 1001 GISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEG 1060
G+ + L GLK+ ETTAA+E E KA D+ DS Q++ KVSRGSFN+ EG
Sbjct: 240 GLPDTL--GLKQRETTAAVEGERKAFSMKGIDSDLDSSHQEL-----LKVSRGSFNDSEG 292
Query: 1061 KFK-GEDDHSNCSPL----------FADGNSEISSTKGRRQEIPMQRIESIIREQRLETA 1109
K + G D SNCSPL A+G+ E SSTK R QEIPM RI+SIIREQRLETA
Sbjct: 293 KLRGGSRDPSNCSPLLDRTFGPTDELAEGHIERSSTKERNQEIPMHRIDSIIREQRLETA 352
Query: 1110 WLQATEKGAPGSLGHLRPEKNQVLPQEDIYRQNHMESLLSSGLSSQQWEDELNQELKILK 1169
WLQ EKG P S+ L+PEKNQ+LPQ+ YRQN +ES+ S G+ SQ+WEDELN E+K+LK
Sbjct: 353 WLQVAEKGTPRSMSRLKPEKNQILPQDGTYRQNQVESMNSVGVPSQKWEDELNHEIKVLK 412
Query: 1170 LNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAGGCSGLFCWNNT 1229
+N+ R L+KD GK+ ++YPI PS LHDSSF+ NF+KE+ GYESG+ + GC+ FCWNN
Sbjct: 413 INDRRALQKDPVGKRVDHYPISPSSLHDSSFVANFNKESMGYESGTGSVGCNSFFCWNND 472
Query: 1230 KPHKKGKVKGTP 1241
KP K+GK+K P
Sbjct: 473 KPPKRGKIKQRP 484
>gi|224119534|ref|XP_002318098.1| predicted protein [Populus trichocarpa]
gi|222858771|gb|EEE96318.1| predicted protein [Populus trichocarpa]
Length = 965
Score = 398 bits (1023), Expect = e-107, Method: Compositional matrix adjust.
Identities = 247/547 (45%), Positives = 330/547 (60%), Gaps = 68/547 (12%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E RSLSQK++P FDEL+GQN+VV+SL+ IS+GRI +YLF GPRGTGKTS ++IF+A
Sbjct: 289 ETPRSLSQKFRPKSFDELVGQNVVVRSLLGAISKGRITSLYLFHGPRGTGKTSASRIFAA 348
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNC++ + KPCG CREC F SG+SR+ EVD +R ++K+ A +P S
Sbjct: 349 ALNCLSR-EYKPCGVCRECVAFFSGRSRDVKEVDSMRINRAKGIRSLIKN--ASMPPISS 405
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF++DECHLL +TW L LE Q VVF+ IT ++D +PRS SR QKY F KI
Sbjct: 406 RFKVFIVDECHLLHGETWGTVLNSLENLSQNVVFVMITPELDMLPRSAVSRSQKYHFPKI 465
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
KD DI RLR I EE+L+ + ALD IA + GSLRDAE MLDQLSLLGKRIT SL +E
Sbjct: 466 KDADIAGRLRNICVEEDLDFDQVALDFIAAKSSGSLRDAEIMLDQLSLLGKRITMSLAHE 525
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
L+GVVS+++L +LL+LA+SSDT+ TV RARELM S +DPM L+SQLA+LIMD++AG
Sbjct: 526 LIGVVSDDELFDLLDLALSSDTSSTVIRARELMRSRIDPMRLVSQLANLIMDVLAGKCQD 585
Query: 755 --------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH-SP 805
+ +E +++RL HALK+LSE+EKQLR+S + TW T LLQL S+ SP
Sbjct: 586 NSSEVRRKFSRKHASEGDMQRLSHALKILSESEKQLRMSKNQSTWLTVALLQLSSLEASP 645
Query: 806 -DLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRH 864
D+ S SS R + + D SST P++
Sbjct: 646 MDVNDSKSSMR-NGHDRDGDFSST----------------------PST----------- 671
Query: 865 LGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIER 924
GE L + H+ + S RL+ G V+ L IW + E
Sbjct: 672 -GESLKHLVLHSCEDRKSE-RLQVQGDCKVT------------------LDSIWKRASEL 711
Query: 925 CHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNV 984
C S +L+ L+ GKL S+ + + +A + F + S+AE+ I +S++TVL NV
Sbjct: 712 CKSNSLRNFLRKQGKLSSLHFDKGLAVAELEFHHPNYASKAEKSWKFIASSLQTVLGCNV 771
Query: 985 EVRIILL 991
E+RI L+
Sbjct: 772 EIRINLV 778
>gi|326500876|dbj|BAJ95104.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 974
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 197/366 (53%), Positives = 262/366 (71%), Gaps = 12/366 (3%)
Query: 449 EEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTS 508
+E E R LSQK++P F ELIG N+V QSL+ + +G+IAP+YLF GPRGTGKTS
Sbjct: 269 QENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKIAPMYLFHGPRGTGKTS 328
Query: 509 TAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA 568
TA+IF+AALNC++ ++ +PCG+C+EC SG+SR+ E+D + L RV+ +LK SA
Sbjct: 329 TARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKEIDASKMDRLGRVKALLK--SA 386
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
L S RFKVF++DECHLL W A +K L+EP + V+I IT+D+D++PR+ + CQ
Sbjct: 387 SLVPYSSRFKVFIVDECHLLLEDAWSAIVKSLDEPYRHTVYIMITSDLDSLPRTSVTYCQ 446
Query: 629 KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
K+ F KIK DIV RL +I +E L + DAL IA ++GSLRDAE MLDQLSLLGKR+
Sbjct: 447 KFHFPKIKVADIVHRLERICIDEGLEFDHDALHFIAAKSNGSLRDAEIMLDQLSLLGKRV 506
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
T SLV+ELVG+VS+++L+ELL+LA+SSDT TV+RARELM S VDP+ L+SQLA+LIMDI
Sbjct: 507 TISLVHELVGLVSDDELIELLDLALSSDTTNTVRRARELMASSVDPLQLVSQLANLIMDI 566
Query: 749 IAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
++G +G +L + +E+L+HALK+LSEAEKQLR S + TW T LLQ
Sbjct: 567 LSGRCQSAVTEVSKSFLGRYALADVGIEKLRHALKILSEAEKQLRTSRNKATWVTVALLQ 626
Query: 799 LGSMHS 804
GS S
Sbjct: 627 FGSAES 632
Score = 59.3 bits (142), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 44/80 (55%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E V IA V F D SRAE+ S I
Sbjct: 683 KLENIWRRAIGKCQSRSAKSFLKKEGILSSVHVTEEVAIAEVGFSHPDHLSRAEKMQSLI 742
Query: 973 TNSIETVLRRNVEVRIILLP 992
++ VL NVE+R L+P
Sbjct: 743 QGVLQHVLGFNVEIRFKLVP 762
>gi|125536334|gb|EAY82822.1| hypothetical protein OsI_38032 [Oryza sativa Indica Group]
Length = 950
Score = 394 bits (1011), Expect = e-106, Method: Compositional matrix adjust.
Identities = 198/386 (51%), Positives = 266/386 (68%), Gaps = 12/386 (3%)
Query: 449 EEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTS 508
+E E R LSQK++P F ELIG N+V QSL+ + +G++AP+YLF GPRGTGKTS
Sbjct: 267 QENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTS 326
Query: 509 TAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA 568
TA+IF+AALNC++ ++ +PCG+C+EC SG+SR+ E+D L RV+ +LK SA
Sbjct: 327 TARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDRLGRVKALLK--SA 384
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
L S RFKVF++DECHLLP W A LK L+EP + V+I IT+DID++PR+ + CQ
Sbjct: 385 SLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQ 444
Query: 629 KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
K+ F KIK DIV RL +I EE L + D L I+ ++GSLRDAE MLDQLSLLGK+I
Sbjct: 445 KFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIMLDQLSLLGKKI 504
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
T SLV+ELVG VS+++L+ELL+LA+SSDT TV+RARELM S +DP+ L+SQLA+LIMDI
Sbjct: 505 TISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDI 564
Query: 749 IAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
++G +G +L E +++L+HALK+LSE EKQLR S + TW T LLQ
Sbjct: 565 LSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQ 624
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEED 824
G+ S + +S S+ +D
Sbjct: 625 FGTNESNLIAESNDMHAHSAMGYTDD 650
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V F D SRAE+ S I
Sbjct: 681 KLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHISRAEKMQSLI 740
Query: 973 TNSIETVLRRNVEVRIILLP 992
++++ VL NVEV+ L+P
Sbjct: 741 ESALQNVLGCNVEVKFKLVP 760
>gi|125579060|gb|EAZ20206.1| hypothetical protein OsJ_35804 [Oryza sativa Japonica Group]
Length = 949
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 196/372 (52%), Positives = 262/372 (70%), Gaps = 12/372 (3%)
Query: 449 EEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTS 508
+E E R LSQK++P F ELIG N+V QSL+ + +G++AP+YLF GPRGTGKTS
Sbjct: 267 QENVPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTS 326
Query: 509 TAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA 568
TA+IF+AALNC++ ++ +PCG+C+EC SG+SR+ E+D L RV+ +LK SA
Sbjct: 327 TARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKMDRLGRVKALLK--SA 384
Query: 569 GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
L S RFKVF++DECHLLP W A LK L+EP + V+I IT+DID++PR+ + CQ
Sbjct: 385 SLVPYSSRFKVFIVDECHLLPEDAWSAILKSLDEPYRHAVYIMITSDIDSLPRTSITHCQ 444
Query: 629 KYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI 688
K+ F KIK DIV RL +I EE L + D L I+ ++GSLRDAE MLDQLSLLGK+I
Sbjct: 445 KFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGSLRDAEIMLDQLSLLGKKI 504
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
T SLV+ELVG VS+++L+ELL+LA+SSDT TV+RARELM S +DP+ L+SQLA+LIMDI
Sbjct: 505 TISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMASAIDPLQLVSQLANLIMDI 564
Query: 749 IAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
++G +G +L E +++L+HALK+LSE EKQLR S + TW T LLQ
Sbjct: 565 LSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQ 624
Query: 799 LGSMHSPDLTQS 810
G+ S + +S
Sbjct: 625 FGTNESNLIAES 636
Score = 58.5 bits (140), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V F D SRAE+ S I
Sbjct: 681 KLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHISRAEKMQSLI 740
Query: 973 TNSIETVLRRNVEVRIILLP 992
++++ VL NVEV+ L+P
Sbjct: 741 ESTLQNVLGCNVEVKFKLVP 760
>gi|302805609|ref|XP_002984555.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
gi|300147537|gb|EFJ14200.1| hypothetical protein SELMODRAFT_423688 [Selaginella moellendorffii]
Length = 1241
Score = 390 bits (1002), Expect = e-105, Method: Compositional matrix adjust.
Identities = 259/711 (36%), Positives = 402/711 (56%), Gaps = 62/711 (8%)
Query: 316 RQGCGIPCYWSK--RTPKHRGVCGSCCSPSLSDTL--RRKGSSILCGSQTMYHGRRRSSS 371
+ GCGIP WS+ + PK +G S + L R+ G L SQ+ GR +++
Sbjct: 341 KHGCGIPWNWSRLGQKPKGKGFLDSTGKMLRPEVLARRKAGEHTLSRSQS-ESGRELATA 399
Query: 372 VSNKRRMASRSAQG----VLPLLAN-----NGDGRAGSSIGTGRSDDELSTNFGELDLEA 422
+ + ++ SA LPLL +GD A SS+ D + GEL+
Sbjct: 400 MFQQDCLSYSSAGNSDAEALPLLTEPEASVSGDV-AASSVEV--DSDNVVAARGELNPRG 456
Query: 423 LSRLDGRRWSSSCRSQDGL-EIVALNGEEE--EGVLENIR---SLSQKYKPIFFDELIGQ 476
+ GR ++ Q L E +A E EG + R SLS KY+P F +++GQ
Sbjct: 457 ILAPKGRSQVTTEALQARLRERLAWISERRVVEGGGSDFRQNKSLSYKYRPKTFRDMVGQ 516
Query: 477 NIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536
N+V+QSL N + RGRI +YLFQGPRGTGK+S A++F+AALNC+++++ +PCG CREC
Sbjct: 517 NVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNCLSSEELRPCGLCRECVA 576
Query: 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAF 596
GKS + E D + GL V+ +L+ A LP +S R+++ V+DE H L +++W F
Sbjct: 577 LNLGKSLDVREFDASRFNGLGSVKELLE--VAILPPSSGRYRLSVVDEVHTLTAESWNFF 634
Query: 597 LKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE 656
LK +EE P + I IT++ + +PR++ SRCQKY F K+KD DI++RL+K++ +EN+++E
Sbjct: 635 LKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDIISRLQKLATKENIDIE 694
Query: 657 PDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSD 716
+AL+LIA ++GSLRDAE LDQL LLG+ +T S + ELVG++ ++KL++LL+ A+S D
Sbjct: 695 IEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLPDDKLMDLLDFALSGD 754
Query: 717 TAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELE 766
T TVK R L++SGV+P+ LMSQLA+LI D++AG+Y +L++ +LE
Sbjct: 755 TVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRKRRFFHKITLSKEDLE 814
Query: 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPS 826
RL+ ALK+LSEAEKQ+R SS++ TW TA +LQ +PD + S T+
Sbjct: 815 RLRQALKILSEAEKQVRASSDQTTWLTAAILQF----APDRAYIFPASSSGSSATQSLVG 870
Query: 827 STSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP----- 881
+ + E + SG +L++ H + +D ++KP
Sbjct: 871 NDTSEKETIESDSG------------ALKQGWEPEHEHFE---NPVDDTAVFAKPEVPWA 915
Query: 882 --SHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGK 939
S S + +A Q + + ++L ++W + ++ SK+LK LL+ HGK
Sbjct: 916 NKSLSTVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLLR-HGK 974
Query: 940 LLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIIL 990
L+S+S E + F K++AE+ S I+++ ++ L VEV+I L
Sbjct: 975 LISLSMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKL 1025
>gi|302797513|ref|XP_002980517.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
gi|300151523|gb|EFJ18168.1| hypothetical protein SELMODRAFT_420117 [Selaginella moellendorffii]
Length = 1291
Score = 388 bits (996), Expect = e-104, Method: Compositional matrix adjust.
Identities = 258/712 (36%), Positives = 402/712 (56%), Gaps = 64/712 (8%)
Query: 316 RQGCGIPCYWSK--RTPKHRGVCGSCCSPSLSDTL--RRKGSSILCGSQTMYHGRRRSSS 371
+ GCGIP WS+ + PK +G S + L R+ G L SQ+ GR +++
Sbjct: 341 KHGCGIPWNWSRLGQKPKGKGFLDSTGKMLRPEVLARRKAGEHTLSRSQS-ESGRELATA 399
Query: 372 VSNKRRMASRSAQG----VLPLLAN-----NGDGRAGSSIGTGRSDDELSTNFGELDLEA 422
+ + ++ SA LPLL +GD A SS+ D + GEL+
Sbjct: 400 MFQQDCLSYSSAGNSDAEALPLLTEPEASVSGD-VAASSVEV--DSDNVVAARGELNPRG 456
Query: 423 LSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLE-------NIRSLSQKYKPIFFDELIG 475
+ GR ++ Q L L E V+E +SLS KY+P F +++G
Sbjct: 457 ILAPKGRSQVTTEALQARLR-ERLGWISERRVVEGGGSDFRQNKSLSYKYRPKTFRDMVG 515
Query: 476 QNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535
QN+V+QSL N + RGRI +YLFQGPRGTGK+S A++F+AALNC+++++ +PCG CREC
Sbjct: 516 QNVVMQSLANAVLRGRIVSLYLFQGPRGTGKSSAARVFAAALNCLSSEELRPCGLCRECV 575
Query: 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLA 595
GKS + E D + GL V+ +L+ A LP +S R+++ V+DE H L +++W
Sbjct: 576 ALNLGKSLDVREFDASRFNGLGSVKELLE--VAILPPSSGRYRLSVVDEVHTLTAESWNF 633
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNV 655
FLK +EE P + I IT++ + +PR++ SRCQKY F K+KD DI++RL+K++ +EN+++
Sbjct: 634 FLKGMEELPGNSIVILITSNPEQLPRTLGSRCQKYPFTKLKDPDIISRLQKLATKENIDI 693
Query: 656 EPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSS 715
E +AL+LIA ++GSLRDAE LDQL LLG+ +T S + ELVG++ ++KL++LL+ A+S
Sbjct: 694 EIEALELIASRSNGSLRDAEMTLDQLGLLGQVVTLSTLQELVGLLPDDKLMDLLDFALSG 753
Query: 716 DTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY--TIGGR--------SLTEAEL 765
DT TVK R L++SGV+P+ LMSQLA+LI D++AG+Y + R +L++ +L
Sbjct: 754 DTVSTVKSVRNLLESGVEPLALMSQLATLITDMLAGSYKPVLTQRKRRFFHKIALSKEDL 813
Query: 766 ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDP 825
ERL+ ALK+LSEAEKQ+R SS++ TW TA +LQ +PD + S T+
Sbjct: 814 ERLRQALKILSEAEKQVRASSDQTTWLTAAILQF----APDRAYIFPASSSGSSATQSLV 869
Query: 826 SSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP---- 881
+ + E + SG +L++ H + +D ++KP
Sbjct: 870 GNDTSEKETIESDSG------------ALKQGWEPEHEHFE---NPVDDTAVFAKPEVPW 914
Query: 882 ---SHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHG 938
S S + +A Q + + ++L ++W + ++ SK+LK LL+ HG
Sbjct: 915 ANKSLSTVPEARIHPYVQTASTNDGHDTCAFDQKRLDDVWQKALKNSRSKSLKHLLR-HG 973
Query: 939 KLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIIL 990
KL+S+S E + F K++AE+ S I+++ ++ L VEV+I L
Sbjct: 974 KLISLSMQEVQATVEIEFQHSKQKAKAEKSRSRISHAFQSSLGCPVEVQIKL 1025
>gi|413918695|gb|AFW58627.1| hypothetical protein ZEAMMB73_598041 [Zea mays]
Length = 995
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 209/425 (49%), Positives = 279/425 (65%), Gaps = 33/425 (7%)
Query: 406 RSDDELSTNFGELDLEALSRLDGRRWS--SSCRS----QDGLEIVALNGEEEEGVL---- 455
RS+D + +NF + WS S CR DG + L+ + E
Sbjct: 241 RSNDVVGSNFSGCGISYC-------WSGASKCRELYSDSDGPDQPLLSTDGTEAAFQGNV 293
Query: 456 ---ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
E R LSQK++P F EL+G N+V QSL+ + +G++AP+YLF GPRGTGKTSTA+I
Sbjct: 294 PYTETPRCLSQKFRPRSFSELVGLNVVAQSLLYSCCKGKVAPMYLFHGPRGTGKTSTARI 353
Query: 513 FSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
F+AALNCV+ ++ +PCG+C+EC SGK R+ E+D L RV+ +LK SA L
Sbjct: 354 FAAALNCVSLEEQRPCGFCKECVILFSGKGRDVKELDVAKMGRLGRVKALLK--SASLVP 411
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
S RFKVF+IDECHLL W A LK L+EP + V+I IT+DI+++PR+ +RCQK+ F
Sbjct: 412 YSSRFKVFIIDECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRASITRCQKFHF 471
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL 692
KIK DIV RL KI E L + D L IA + GSLRD+E MLDQLSLLGK+IT SL
Sbjct: 472 PKIKVADIVYRLEKICIGEGLEFDHDGLYFIAAKSSGSLRDSEVMLDQLSLLGKKITISL 531
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V+ELVG VS+++L+ELL+LA+SSDT TV+RARELM S +DP+ L+SQLA+LIMDI++G
Sbjct: 532 VHELVGSVSDDELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGR 591
Query: 753 YT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+G +L+E +++L+HALK+LSE EKQLR S + TW T LLQ G+
Sbjct: 592 CQSAVSEVSKSFLGRYALSEVGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQFGT- 650
Query: 803 HSPDL 807
+ P+L
Sbjct: 651 NEPNL 655
Score = 60.8 bits (146), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V FG D SRAE+ S I
Sbjct: 704 KLENIWRRAIGKCRSRSAKSFLRKEGFLSSVHVTEELAIAEVGFGHPDHLSRAEKMQSLI 763
Query: 973 TNSIETVLRRNVEVRIILLP 992
S++ VL NVE+R L+P
Sbjct: 764 ECSLQHVLGCNVEIRFKLVP 783
>gi|414586712|tpg|DAA37283.1| TPA: hypothetical protein ZEAMMB73_202347 [Zea mays]
Length = 814
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 197/375 (52%), Positives = 263/375 (70%), Gaps = 15/375 (4%)
Query: 437 SQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVY 496
S DG+E A G E +R LSQK++P F ELIG N+V QSL+ + +G++AP+Y
Sbjct: 98 STDGIE-AAFQGNVP--YTETLRCLSQKFRPRSFSELIGLNVVAQSLLYSTCKGKVAPMY 154
Query: 497 LFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL 556
LF GPRGTGKTSTA+IF+AALNCV+ ++ +PCG+C+EC SGKSR+ E+D L
Sbjct: 155 LFHGPRGTGKTSTARIFAAALNCVSLEEQRPCGFCKECVILFSGKSRDVKELDAAKMDRL 214
Query: 557 DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616
RV+ +LK SA L S RFKVF++DECHLL W A LK L+EP + V+I IT+DI
Sbjct: 215 GRVKALLK--SASLVPYSSRFKVFIVDECHLLREDAWSAILKSLDEPYRHTVYIMITSDI 272
Query: 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAET 676
+++PR+ + CQK+ F KIK DIV RL +I EE L + D L IA ++GSLRD+E
Sbjct: 273 ESLPRASITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEI 332
Query: 677 MLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV 736
MLDQLSLLGK++T SLV+ELVG VS+++L+ELL+LA+SSDT TV+RARELM S +DP+
Sbjct: 333 MLDQLSLLGKKVTISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMGSAIDPLQ 392
Query: 737 LMSQLASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
L+SQLA+LIMDI++G +G +L+E +++L+HALK+LSE EKQLR S
Sbjct: 393 LVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALSEVGIKKLRHALKILSETEKQLRTSR 452
Query: 787 ERCTWFTATLLQLGS 801
+ TW T LLQ +
Sbjct: 453 NQATWVTVALLQFST 467
Score = 58.2 bits (139), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V F D SRAE+ S I
Sbjct: 521 KLENIWRRAIGKCRSRSAKSFLRKEGFLSSVHVTEELAIAEVGFEHPDHLSRAEKMQSLI 580
Query: 973 TNSIETVLRRNVEVRIILLP 992
+S++ VL NVE+R L+P
Sbjct: 581 ESSLQHVLGCNVEIRFKLVP 600
>gi|242073490|ref|XP_002446681.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
gi|241937864|gb|EES11009.1| hypothetical protein SORBIDRAFT_06g020470 [Sorghum bicolor]
Length = 855
Score = 387 bits (993), Expect = e-104, Method: Compositional matrix adjust.
Identities = 196/362 (54%), Positives = 259/362 (71%), Gaps = 13/362 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E R LSQK++P F ELIG N+V QSL+ + +G++AP+YLF GPRGTGKTSTA+IF+A
Sbjct: 158 ETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMYLFHGPRGTGKTSTARIFAA 217
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV+ ++ +PCG+C+EC SGKSR+ E+D L RV+ +LK SA L S
Sbjct: 218 ALNCVSLEEQRPCGFCKECVILFSGKSRDVKELDAAKMDRLGRVKALLK--SASLVPYSS 275
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF+IDECHLL W A LK L+EP + V+I IT+DI+++PR+ + CQK+ F KI
Sbjct: 276 RFKVFIIDECHLLQEDAWSAILKSLDEPYRHTVYIMITSDIESLPRTSITHCQKFHFPKI 335
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
K DIV RL +I EE L + D L IA ++GSLRD+E MLDQLSLLGK+IT SLV+E
Sbjct: 336 KVADIVYRLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEIMLDQLSLLGKKITISLVHE 395
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
LVG VS+++L+ELL+LA+SSDT TV+RARELM S +DP+ L+SQLA+LIMDI++G
Sbjct: 396 LVGSVSDDELIELLDLALSSDTTNTVRRARELMGSAIDPLQLVSQLANLIMDILSGRCQS 455
Query: 755 ---------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+G +L+E +++L+HALK+LSE EKQLR S + TW T LLQ S + P
Sbjct: 456 AVTEVSKSFLGRYALSEIGIKKLRHALKILSETEKQLRTSRNQATWVTVALLQF-STNEP 514
Query: 806 DL 807
+L
Sbjct: 515 NL 516
Score = 60.1 bits (144), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V FG D SRAE+ S I
Sbjct: 565 KLENIWRRAIGKCRSRSAKSFLRKEGFLSSVHVTEELAIAEVGFGHPDHLSRAEKMQSLI 624
Query: 973 TNSIETVLRRNVEVRIILLP 992
S++ VL NVE+R L+P
Sbjct: 625 ECSLQHVLGCNVEIRFKLVP 644
>gi|357164239|ref|XP_003579992.1| PREDICTED: uncharacterized protein LOC100823838 [Brachypodium
distachyon]
Length = 977
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 206/435 (47%), Positives = 282/435 (64%), Gaps = 38/435 (8%)
Query: 396 GRAGSSIGTG------RSDDELSTNFGELDLEALSRLDGRRWSSSCRSQD------GLEI 443
G S++G G RS+D + +NF + WS + + +D G E
Sbjct: 208 GSRRSTLGHGTEDTRVRSNDVVGSNFSGCGISYC-------WSGASKYRDLYSDSDGPEQ 260
Query: 444 VALNGEEEEGVL-------ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVY 496
L+ E E E R LSQK++P F ELIG N+V QSL+ + +G++AP+Y
Sbjct: 261 PLLSTEGTEVAFQDNAPYTETPRCLSQKFRPRSFSELIGLNVVAQSLLYSSCKGKVAPMY 320
Query: 497 LFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGL 556
LF GPRGTGKTSTA+IF+AALNC++ ++ +PCG+C+EC SG+SR+ E+D L
Sbjct: 321 LFHGPRGTGKTSTARIFAAALNCLSLEEQRPCGFCKECVILFSGRSRDVKELDAAKLDRL 380
Query: 557 DRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616
RV+ +LK SA L S RFKVF++DECHLL W A +K L+EP + V+I IT+D+
Sbjct: 381 GRVKALLK--SASLVPYSSRFKVFIVDECHLLQEDAWSAIMKSLDEPYRHTVYIMITSDL 438
Query: 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAET 676
D++PR+ + CQK+ F KIK DIV RL +I EE L + D L IA ++GSLRD+E
Sbjct: 439 DSLPRASITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFIAAKSNGSLRDSEI 498
Query: 677 MLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV 736
MLDQLSLLGKR+T SLV+ELVG+VS+++L+ELL+LA+SSDT TV+RARELM S +DP+
Sbjct: 499 MLDQLSLLGKRVTVSLVHELVGLVSDDELIELLDLALSSDTTNTVRRARELMASSIDPLQ 558
Query: 737 LMSQLASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
L+SQLA+LIMDI++G + +L E +++L+HALK+LSE EKQLR S
Sbjct: 559 LVSQLANLIMDILSGRCQSAVTEVSKSFLERYALAEVGIQKLRHALKILSETEKQLRTSR 618
Query: 787 ERCTWFTATLLQLGS 801
+ TW T LLQ G+
Sbjct: 619 NKATWVTVALLQFGT 633
Score = 55.8 bits (133), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 45/80 (56%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V F D SRAE+ S I
Sbjct: 687 KLENIWRRAIGKCQSRSAKSFLKKEGILSSVHVTEELAIAEVGFSHPDHLSRAEKMQSLI 746
Query: 973 TNSIETVLRRNVEVRIILLP 992
+ ++ VL NVE++ ++P
Sbjct: 747 ESMLQHVLGFNVEIKFKIVP 766
>gi|168028953|ref|XP_001766991.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681733|gb|EDQ68157.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1473
Score = 384 bits (987), Expect = e-103, Method: Compositional matrix adjust.
Identities = 263/756 (34%), Positives = 404/756 (53%), Gaps = 116/756 (15%)
Query: 307 MDDHLDLP--GRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRK-GSSILCG 358
M D LD+ + GCG+P YW+ + K++G G + + +T ++K G S
Sbjct: 548 MSDELDVSEIPQNGCGMPWYWTSGSNKYKGKSLLDYAGIGLTCAFPETAKKKLGDSKQVS 607
Query: 359 SQTMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGEL 418
+ HG +R V G+ PLL N G ELST+ E+
Sbjct: 608 RASSRHGSQRDLQVP-----IDPENHGI-PLL-NGG---------------ELSTD--EI 643
Query: 419 DLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENI---------RSLSQKYKPIF 469
D + R + R +++ V L+GE+ G + RS+SQKY+P
Sbjct: 644 DEHDVVRYEHR----DVPARETPASVRLSGEKCLGQGAEVSNSKTAFTHRSMSQKYRPKS 699
Query: 470 FDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD-QTKPC 528
F +++GQ +VV+SL I++G++APVYLF GPRG+GKT+ A++F+AAL C+ T+ +PC
Sbjct: 700 FKDMVGQTLVVKSLTTAITKGKVAPVYLFAGPRGSGKTTCARVFAAALVCLNTEPHRRPC 759
Query: 529 GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLL 588
G CREC +SR+ E+D + LD +R +L LPS++ R +VF+++ C L
Sbjct: 760 GLCRECATMTLNRSRDVKEIDVSTCPDLDHMRLLL-----NLPSSNGRQQVFILEGCDFL 814
Query: 589 PSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKIS 648
++ W AFLKFL++PP+ VVFI ITT+++ +P S SRCQKY F K+K+ +I+ RL+ ++
Sbjct: 815 NTELWTAFLKFLDDPPRNVVFILITTNLERLPLSATSRCQKYHFGKLKESEIMTRLQGLA 874
Query: 649 AEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLEL 708
+E+L+++ AL LIA A+GSLRDAE MLDQLSLL + IT ++V EL G++ EEKL+ L
Sbjct: 875 EKEHLDIDEAALFLIASRAEGSLRDAEMMLDQLSLLDQTITLAMVQELSGLIPEEKLINL 934
Query: 709 LELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEA----- 763
L++A+++DT TVK REL+D+GVD + L++QLASLI +I+AG + + +
Sbjct: 935 LDMALAADTVNTVKGMRELLDAGVDALSLVAQLASLIANILAGAIDLRRETRKKGFFYRN 994
Query: 764 -----ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQS- 817
E +RL+ ALK+L+E EKQLR S++R TW TA LLQ +PD + SS S
Sbjct: 995 MPRREEQQRLRQALKVLAECEKQLRASNDRPTWLTAALLQF----APDRSYLPSSVDTSM 1050
Query: 818 --------------------SRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREP 857
R P+S SR + + Q +P + S +L +P
Sbjct: 1051 APSPIAFDTFERVPPGEPCTPRLPPPQPASESRSSRKHS-----QQVPNDVSS--ALSQP 1103
Query: 858 VNGN---------SRHLGEVLSRIDGHNSYSKPSH------------SRLKDAGALAVSQ 896
V+G+ + G+ G+ SK H + L+ A +L +
Sbjct: 1104 VHGHRDKDKAPVSASPTGKPKGPPTGNQLQSKVHHAATESAMDQADDTSLRSASSLVLFD 1163
Query: 897 NGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKL--LSISEVERVLIAYV 954
VG+ + +IW + ++ C S L+QLL G L LS++ E +A+V
Sbjct: 1164 PSQAVGSRDFRMLTRRDMEDIWGKVLDGCRSNVLRQLLSSQGTLMALSVARDETFAVAHV 1223
Query: 955 AFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIIL 990
F K+RAER SS ++ + L VE+++ L
Sbjct: 1224 EFRSPGHKARAERLRSSTCHAFQMALGCPVELKLSL 1259
>gi|357447087|ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355482867|gb|AES64070.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 1177
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 261/730 (35%), Positives = 386/730 (52%), Gaps = 107/730 (14%)
Query: 304 DDAMDDHLDLPGRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCG 358
D+ DD++ + GCG+P WS+ HRG + G S LSD+ +KG S+
Sbjct: 317 DNYADDNVTRAPKNGCGMPWNWSR--IHHRGKTFLDIAGRSLSCGLSDSRLKKGRSLTSN 374
Query: 359 SQ---TMYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSS----IGTGRSDDEL 411
+ M S S +N S LPLL + G GS+ G G S
Sbjct: 375 GRNISVMPVAADDSCSCTN-------SEAEALPLLVD-ASGSHGSTENACWGHGYS---- 422
Query: 412 STNFGELDLEALSRLDGRRWSSSCRSQD---GLEIVALNGEEEEGVLENI----RSLSQK 464
GEL + + + QD L A +G + + N +SL+QK
Sbjct: 423 ----GELGI----------YGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRHQSLTQK 468
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
Y P F +++GQN+V Q+L N +SR ++ +Y+F GP GTGKTS A+IF+ ALNC +++
Sbjct: 469 YIPRTFRDMVGQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEH 528
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL-SAGLPSASPRFKVFVID 583
KPCG+C C GKSRN EV + + + +L ++ + LPS +++VF+ D
Sbjct: 529 PKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPS---QYRVFIFD 585
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
+C L + W A K ++ P+RVVFI ++T +D +P I SRCQK+ F K+KD DIV
Sbjct: 586 DCDSLSADCWNAISKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYT 645
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEE 703
L I+ +E L+++ DAL LIA +DGSLRDAE L+QLSLLG+RI+ LV ELVG++S+E
Sbjct: 646 LHGIATKEGLDIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDE 705
Query: 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG------ 757
KL++LL+LA+S+DT TVK R +M++GV+P+ LMSQLA++I DI+AGTY
Sbjct: 706 KLVDLLDLALSADTVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRK 765
Query: 758 ----RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS------------ 801
+ L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 766 FFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSSDN 825
Query: 802 --MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYM-PQNAVSPASLREPV 858
HSP +G+ + +++R T +R +RMS M NA S A R +
Sbjct: 826 SFNHSPFALNNGNVK-EATRNTGNPVEILNRT----RRMSMDARMESSNAGSSADRRHSL 880
Query: 859 NGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIW 918
+G + P H+ + S + + + RN +++ EIW
Sbjct: 881 SGYA------------------PQHT-------YSHSTDKTRINERQTSDRNRKEIDEIW 915
Query: 919 AQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIET 978
+ +ER H LK+ L GKL+ IS + F KS AE+F I + E+
Sbjct: 916 LEVLERIHYPGLKEFLYKAGKLIFIS-FGAAPTVQLMFNSQLSKSTAEKFTGHILQAFES 974
Query: 979 VLRRNVEVRI 988
VL +V + I
Sbjct: 975 VLGSSVTIEI 984
>gi|255540419|ref|XP_002511274.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223550389|gb|EEF51876.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1025
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/361 (54%), Positives = 260/361 (72%), Gaps = 11/361 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ RS SQK++P F+EL+GQN+VV+SL++ I++GR+ +YLF GPRGTGKTS ++IF+A
Sbjct: 290 ESPRSFSQKFRPKSFEELVGQNVVVRSLLSAIAQGRVTSLYLFHGPRGTGKTSASRIFAA 349
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNC++ ++ KPCG CREC F SG+SR+ EVD ++R+R ++K+ A +P S
Sbjct: 350 ALNCLSLEEYKPCGLCRECVQFFSGRSRDVKEVDSVRINRVERIRALIKN--AAIPPVSS 407
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF++DECHLL +TW L LE PQ VVF+ +T +D +PRS + QKY F KI
Sbjct: 408 RFKVFIVDECHLLQGETWATILNSLENLPQHVVFVMVTPHLDKLPRSAVTHSQKYHFPKI 467
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
KD DI RL+ I EE ++ + ALD IA ++GSLRDAE MLDQ+SLLGKRIT SL E
Sbjct: 468 KDADIAVRLKNICIEEGIDFDQVALDFIAAKSNGSLRDAEMMLDQMSLLGKRITMSLAYE 527
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
L GVVS+++LL+LL+LA+SSDT+ TV RARELM S +DPM L+SQLA++IMD++AG
Sbjct: 528 LAGVVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPMQLVSQLANIIMDMLAGKCQE 587
Query: 755 --------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
R TEA+++RL HALK+LSE EKQLR+S + TW T LLQL S+ +P
Sbjct: 588 DSSEVRRKFSSRHATEADMQRLSHALKVLSETEKQLRMSKSQSTWLTVALLQLSSLEAPF 647
Query: 807 L 807
L
Sbjct: 648 L 648
Score = 52.0 bits (123), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 45/78 (57%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW E C S +L+ L GKL S+ + + +A + F D S+AE+ +I
Sbjct: 700 LESIWKNATELCQSNSLRNFLGKQGKLSSLCVNQDLAVAELEFHRPDYVSKAEKSWKTIA 759
Query: 974 NSIETVLRRNVEVRIILL 991
++++++L RNVE+RI L+
Sbjct: 760 SALQSILGRNVEIRINLV 777
>gi|356557765|ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793832 [Glycine max]
Length = 1191
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 258/719 (35%), Positives = 380/719 (52%), Gaps = 69/719 (9%)
Query: 300 LNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSS 354
L + D+ D+++ + GCGIP WS+ HRG + G S LSD+ +KG+
Sbjct: 308 LEEADEFADENVTRAPKNGCGIPWNWSR--IHHRGKTFLDMAGRSLSCGLSDSRLKKGTF 365
Query: 355 ILCGSQT--MYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRS--DDE 410
G M RSSS +RS LPLL +GS T + D
Sbjct: 366 AANGRNISEMPVASERSSS-------CTRSDAEALPLLVEA----SGSHASTENACWDHY 414
Query: 411 LSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFF 470
S G +S RS D + L G +SL+QKY P F
Sbjct: 415 YSGELGLFGDNLFKHDVDSDLASEARSGDQRK---LRGNRHS----RHQSLTQKYMPRTF 467
Query: 471 DELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGY 530
+++GQN+V Q+L N + + ++ +Y+F GP GTGKTS+A+IF+ ALNC +++ KPCG+
Sbjct: 468 RDMVGQNLVAQALSNAVMKKKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGF 527
Query: 531 CRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLP 589
C C GKSRN EV + + + +L ++ LPS ++VF+ D+C L
Sbjct: 528 CNYCVAHDMGKSRNIREVGPVSNFDFESIMELLDNMIVSQLPS---HYRVFIFDDCDTLS 584
Query: 590 SKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISA 649
+ W A K ++ P+RVVFI +++ +D +P I SRCQK+ F K+KD DI+ L I+
Sbjct: 585 TDCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLEWIAT 644
Query: 650 EENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELL 709
+E L ++ DAL LIA +DGSLRDAE L+QLSLLG+RI+ LV ELVG++S+EKL++LL
Sbjct: 645 KEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLL 704
Query: 710 ELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS---------- 759
+LA+S+DT TVK R +M++GV+P+ LMSQLA++I DI+AGTY
Sbjct: 705 DLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFRKDRRRRKFFRRPL 764
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSR 819
L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L S + S
Sbjct: 765 LSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSP 824
Query: 820 TTEEDPSSTSREAVVYKRMSG-PQYMPQNA--------VSPASLREPVNGNSRHLGEVLS 870
+D + +REA R++G P +P + +G +R LG
Sbjct: 825 FALKD--ADAREAA---RLTGNPVDIPNKGRRLSMDARIENVHAGSSADGMTRGLGSEKK 879
Query: 871 RIDGHN-SYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKT 929
R H+ S P H+ + + +S+ I+G N K+ EIW + +ER
Sbjct: 880 R---HSVSGFTPQHANSQATEKIRMSER-QILGI------NRTKIEEIWLEVLERIQITG 929
Query: 930 LKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
LK+ L GKL+S+S + F KS AE+F I + E+VL ++ + I
Sbjct: 930 LKEFLFKEGKLISVS-FGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEI 987
>gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa]
gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa]
Length = 1188
Score = 370 bits (951), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 248/706 (35%), Positives = 382/706 (54%), Gaps = 77/706 (10%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCGIP WS+ HRG + G S LSD+ RR G T HGR
Sbjct: 322 RNGCGIPWNWSR--IHHRGKTFLDMAGRSFSCGLSDS-RRDG--------TFSHGRDFPG 370
Query: 371 S--VSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDG 428
S+ +++S LPLL G S+ G D GEL + A L
Sbjct: 371 MPVASDHSTSSTKSDVEALPLLVE-ASGSHESTDNAGWVHDY----SGELGIYA-DHLLK 424
Query: 429 RRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTIS 488
S RS + ++ G+ G +N L+QKY P F +L+GQN+V Q+L N +S
Sbjct: 425 NDVDSEARSSEQCKL----GQNHNGRHQN---LTQKYMPRTFRDLVGQNLVAQALSNAVS 477
Query: 489 RGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEV 548
R ++ +Y+F GP GTGKTS A+IF+ ALNC + + KPCG+C C GKSRN EV
Sbjct: 478 RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGFCNSCISHDMGKSRNIREV 537
Query: 549 DGTNKKGLDRVRYILKHLSA-GLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRV 607
+ + + +L ++ +PS ++VF+ D+C L W A LK ++ P+RV
Sbjct: 538 GPVSNFDFESIMDLLDNMIVYQIPSL---YRVFIFDDCDSLSPDCWSAILKVIDRAPRRV 594
Query: 608 VFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNA 667
VF+ + + +D +P I SRCQK+ F K+KD DI+ L+ IS++E+++++ DAL LIA +
Sbjct: 595 VFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKLIASRS 654
Query: 668 DGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAREL 727
DGSLRDAE L+QLSLLG++I+ LV ELVG++S+EKL++LL+LA+S+DT TVK R +
Sbjct: 655 DGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVI 714
Query: 728 MDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLTEAELERLKHALKLLSE 777
M++GV+P+ LMSQLA++I DI+AG+Y + L++ ++E+L+ ALK LSE
Sbjct: 715 METGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRKPLSKEDMEKLRQALKTLSE 774
Query: 778 AEKQLRLSSERCTWFTATLLQLGS---------------MHSPDLTQSGSSRRQSSRTTE 822
AEKQLR+S+++ TW TA LLQL HSP + R S + E
Sbjct: 775 AEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLAQNNMGGRDISRKGGE 834
Query: 823 EDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPS 882
+ + R+ ++ R+ + +P + A R NG++ G + R S P
Sbjct: 835 HEMPNNGRDLPMHVRL---ESLPGG--TSADFRN--NGSTN--GTSIDRKRNAASVMAPQ 885
Query: 883 HSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLS 942
+ ++ + A+ V+ ++ ++ + EIW + +E+ ++++ L GKL+S
Sbjct: 886 WTPVQTSDAIRVNSRQ-------VSGKSHKGYEEIWLEVLEKIQINSMREFLYQEGKLIS 938
Query: 943 ISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+S + + F K +AE+F + I + E+VL V + I
Sbjct: 939 VSFGAAPTVQLI-FSSHFTKLKAEKFRAHILQAFESVLGSPVTIEI 983
>gi|356549172|ref|XP_003542971.1| PREDICTED: uncharacterized protein LOC100809005 [Glycine max]
Length = 1101
Score = 370 bits (949), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 249/729 (34%), Positives = 375/729 (51%), Gaps = 107/729 (14%)
Query: 300 LNDNDDAMDDHLDLPGRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSS 354
L + D+ D+++ + GCGIP WS+ HRG + G S LSD+ +KG+
Sbjct: 304 LEEADEFADENVTRAPKNGCGIPWNWSR--IHHRGKTFLDLAGRSLSCGLSDSRLKKGTF 361
Query: 355 ILCGSQT--MYHGRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELS 412
G M RSSS ++S LPLL A + D + S
Sbjct: 362 TANGRNISEMPVASERSSS-------CTKSDAEALPLLVEASGSHASTENACW--DHDYS 412
Query: 413 TNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDE 472
G +S RS D + L G +SL+QKY P F +
Sbjct: 413 GELGLFGDNLFKHDVDSDLASEARSGDQRK---LRGNRHS----RHQSLTQKYMPQTFRD 465
Query: 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532
+IGQN+V Q+L N + + ++ +Y+F GP GTGKTS A+IF+ ALNC +++ KPCG+C
Sbjct: 466 MIGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCN 525
Query: 533 ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSK 591
C GKSRN EV + + + +L +++ + LPS ++VF+ D+C L +
Sbjct: 526 YCVAHDMGKSRNIREVGPVSNFDFEGIMDLLDNMTLSQLPS---HYRVFIFDDCDTLSTD 582
Query: 592 TWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEE 651
W A K ++ P+RVVFI +++ +D +P I SRCQK+ F K+KD DI+ L+ I+ +E
Sbjct: 583 CWNAISKVIDRVPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKE 642
Query: 652 NLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711
L ++ DAL LIA +DGSLRDAE L+QLSLLG+RI+ L+ ELVG++S+EKL++LL+L
Sbjct: 643 GLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDL 702
Query: 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI----------GGRSLT 761
A+S+DT TVK R +M++GV+P+ LMSQLA++I DI+AGTY + L+
Sbjct: 703 ALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRKFFRRQPLS 762
Query: 762 EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTT 821
+ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL +PD
Sbjct: 763 KEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL----APD--------------- 803
Query: 822 EEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKP 881
Q V P S N H S P
Sbjct: 804 ------------------------QQYVLPTSSDNSFN---------------HRSGFTP 824
Query: 882 SHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLL 941
H+ + + +S+ I+G +N +++ EIW + +ER LK+ L GKL+
Sbjct: 825 QHAHSQTTDKIRMSER-QILG------KNHKEIEEIWLEVLERIQVTGLKEFLFKEGKLI 877
Query: 942 SISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRN--VEVRIILLPDGEASIH 999
S+S + F KS AE+F I + E+VL + +E+R L D +++
Sbjct: 878 SVS-FGAAPTVQLMFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDAASAVQ 936
Query: 1000 HGISNELPK 1008
+++ + K
Sbjct: 937 QPLTDSVEK 945
>gi|224133772|ref|XP_002321657.1| predicted protein [Populus trichocarpa]
gi|222868653|gb|EEF05784.1| predicted protein [Populus trichocarpa]
Length = 907
Score = 369 bits (947), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 195/358 (54%), Positives = 255/358 (71%), Gaps = 11/358 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E RSLSQK++P FDEL+GQ +V +SL+ ISRGRI +YLF GPRGTGKTS +KIF+A
Sbjct: 246 ETPRSLSQKFRPKSFDELVGQGVVARSLLGAISRGRITSLYLFHGPRGTGKTSASKIFAA 305
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNC++ ++ KPCG CREC F SG+S++ EVD R+R ++K A +P S
Sbjct: 306 ALNCLSHEENKPCGLCRECYVFFSGRSQDVKEVDSVRINQTRRIRSLIK--DASMPPISS 363
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF++DECHLL +TW L LE + VVF+ IT ++D +P+S +R QKY F KI
Sbjct: 364 RFKVFIVDECHLLHGETWAIVLNSLENLSENVVFVMITPELDMLPKSAVTRSQKYHFPKI 423
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
K+ DI RLR I EE L+ + ALD IA + GSLRDAE MLDQLSLLGKRIT ++V+E
Sbjct: 424 KEADIAGRLRNICVEEALDFDQVALDFIATKSSGSLRDAEIMLDQLSLLGKRITMTMVHE 483
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-- 753
L+GVVS+++LL LL+LA+SSDT+ TV RARELM S +DPM L+SQLA+LIMD++AG
Sbjct: 484 LIGVVSDDELLGLLDLALSSDTSSTVIRARELMRSRIDPMQLVSQLANLIMDVLAGKCKD 543
Query: 754 -------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
+ +E +++RL HALK+LSE+EKQLR+S + TW TA LLQL S+ +
Sbjct: 544 DSSEVRRKFSRKHSSEGDMQRLSHALKILSESEKQLRMSRNQSTWLTAALLQLSSLEA 601
Score = 48.1 bits (113), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E C S +L+ L+ GKL S+ + +A + F D S+AE+ I
Sbjct: 644 LDTIWKRTSELCQSNSLRNFLRKQGKLSSLHINRGLAVAELEFHHSDYASKAEKSWKLIA 703
Query: 974 NSIETVLRRNVEVRIILL 991
+ ++T+L NVE+RI L+
Sbjct: 704 SLLQTILGCNVEIRINLV 721
>gi|297733651|emb|CBI14898.3| unnamed protein product [Vitis vinifera]
Length = 875
Score = 364 bits (935), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 199/361 (55%), Positives = 259/361 (71%), Gaps = 11/361 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ RSLSQK++P F+EL+GQN+V +SL+ ISRGRI YLF GPRGTGKTS ++IF+A
Sbjct: 150 ESPRSLSQKFRPKAFNELVGQNVVARSLLGAISRGRITSFYLFHGPRGTGKTSASRIFAA 209
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNC++ ++ +PCG CREC F SG+SR+ E+D R+R ++KH + G P +S
Sbjct: 210 ALNCLSLEEHRPCGLCRECVLFFSGRSRDSKEIDTVRINQTGRMRSLIKH-AIGRPVSS- 267
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFKVF+IDECHLL +TW L L++ PQ VVFI IT +D +PRS SR Q+Y F KI
Sbjct: 268 RFKVFIIDECHLLRGETWATVLNSLDDLPQHVVFIMITPSLDKLPRSAVSRSQRYHFPKI 327
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
KD DI ++L +I EE L + ALD IA ++GSLRDAE MLDQLSLLGKRIT S+ E
Sbjct: 328 KDADIASKLGRICVEECLEFDQVALDFIAAKSNGSLRDAEMMLDQLSLLGKRITMSMTYE 387
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
L+G+VS+++LL+LL+LA+SSDT+ TV+RARELM S +DPM L+SQLA+LIMDI+AG
Sbjct: 388 LIGIVSDDELLDLLDLALSSDTSNTVRRARELMRSRIDPMQLISQLANLIMDILAGKCQE 447
Query: 756 GGRSL---------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
G + +E +L++L HALK+LSE EKQLR S + TW T LLQL S+ S
Sbjct: 448 GTSEVRRNFFEGHTSEVDLQKLSHALKILSETEKQLRASKNQTTWLTVALLQLSSVESSF 507
Query: 807 L 807
L
Sbjct: 508 L 508
Score = 53.1 bits (126), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
+L +W Q E C S +LK L+ GKL S+ + + +A + F D S+AE+ I
Sbjct: 552 QLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLI 611
Query: 973 TNSIETVLRRNVEVRIILLP 992
+S++++L NVE+RI L P
Sbjct: 612 ASSLQSILGCNVEIRINLAP 631
>gi|4220511|emb|CAA22984.1| DNA polymerase III like protein [Arabidopsis thaliana]
gi|7269330|emb|CAB79389.1| DNA polymerase III like protein [Arabidopsis thaliana]
Length = 815
Score = 360 bits (924), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 260/380 (68%), Gaps = 12/380 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSLSQK++P FDEL+GQ +VV+ L++TI RGRI VYLF GPRGTGKTST+KIF+AALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C++ ++PCG C EC + SG+ R+ ME D +R ++K SA LP S RF
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIK--SASLPPVSSRF 356
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDEC LL +TW L L+ Q VFI +T++++ +PR++ SR QKY F+K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI +L KI EE ++ + A+D IA +DGSLRDAE MLDQLSLLGKRIT+SL +L+
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT----- 752
GVVS+++LL+LL+LAMSSDT+ TV RARELM S +DPM L+SQLA++IMDIIAG
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 753 ----YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
R +E E+++L++ALK+LS+AEK LR S + TW T LLQL + S
Sbjct: 537 SATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSSSFA 596
Query: 809 QSGSSRRQSSRTTEEDPSST 828
+ R Q ++ E +S+
Sbjct: 597 TDENGRNQINKDVELSSTSS 616
Score = 42.4 bits (98), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 912 EKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSS 971
E + +W + C S +LK+ L G+L S++ + V IA + F +RAE+
Sbjct: 637 ETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKL 696
Query: 972 ITNSIETVLRRNVEVRIILL 991
I +S ++VL NVE+++ L+
Sbjct: 697 IADSFQSVLGCNVEIQMNLV 716
>gi|186513260|ref|NP_194210.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|186513264|ref|NP_001119046.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659557|gb|AEE84957.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332659558|gb|AEE84958.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 857
Score = 360 bits (924), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 194/380 (51%), Positives = 260/380 (68%), Gaps = 12/380 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSLSQK++P FDEL+GQ +VV+ L++TI RGRI VYLF GPRGTGKTST+KIF+AALN
Sbjct: 239 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 298
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C++ ++PCG C EC + SG+ R+ ME D +R ++K SA LP S RF
Sbjct: 299 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIK--SASLPPVSSRF 356
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDEC LL +TW L L+ Q VFI +T++++ +PR++ SR QKY F+K+ D
Sbjct: 357 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 416
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI +L KI EE ++ + A+D IA +DGSLRDAE MLDQLSLLGKRIT+SL +L+
Sbjct: 417 ADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 476
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT----- 752
GVVS+++LL+LL+LAMSSDT+ TV RARELM S +DPM L+SQLA++IMDIIAG
Sbjct: 477 GVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 536
Query: 753 ----YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
R +E E+++L++ALK+LS+AEK LR S + TW T LLQL + S
Sbjct: 537 SATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSSSFA 596
Query: 809 QSGSSRRQSSRTTEEDPSST 828
+ R Q ++ E +S+
Sbjct: 597 TDENGRNQINKDVELSSTSS 616
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%)
Query: 912 EKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSS 971
E + +W + C S +LK+ L G+L S++ + V IA + F +RAE+
Sbjct: 637 ETVESVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKL 696
Query: 972 ITNSIETVLRRNVEVRIILL 991
I +S ++VL NVE+++ L+
Sbjct: 697 IADSFQSVLGCNVEIQMNLV 716
>gi|356513662|ref|XP_003525530.1| PREDICTED: uncharacterized protein LOC100786687 [Glycine max]
Length = 976
Score = 358 bits (919), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 194/364 (53%), Positives = 257/364 (70%), Gaps = 11/364 (3%)
Query: 448 GEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKT 507
G E E RSLS K++P F +L+GQN++ +SL+ IS GRI+ Y+F GPRGTGKT
Sbjct: 280 GVEISPTSETPRSLSMKFRPKSFSDLVGQNVIGKSLLGAISTGRISSFYIFHGPRGTGKT 339
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
S ++IF+AA+NC++ + KPCG CREC F G+S+N EVD D+V+ ++K S
Sbjct: 340 SASRIFAAAMNCLSPLEQKPCGLCRECVLFFLGRSKNVKEVDSLRINRADKVKSLVK--S 397
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
A +P AS FKVF++DEC +L +TW L LE RVVF+ IT D+D +PRS SR
Sbjct: 398 ACIPPASSSFKVFIVDECQVLHGETWACLLNCLENVSPRVVFVMITPDLDKLPRSAVSRA 457
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR 687
Q+Y F KIKD DI RL+KI EE L E ALD IA + GSLRDAETMLDQLSLLGK+
Sbjct: 458 QRYHFAKIKDADIARRLKKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKK 517
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
IT SLV+EL GV+S+++LL+LL+LA+SSDT+ TV RAR+L+ + +DP+ L+SQLA+LIMD
Sbjct: 518 ITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARKLVRTRIDPLQLISQLANLIMD 577
Query: 748 IIAGTYTIGG---------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
I+AG +G R +EA++++L HAL++LSE EKQLR+S + TWFTA LLQ
Sbjct: 578 ILAGKCELGASETRTRFCNRYTSEADMQKLSHALRILSETEKQLRISKNQTTWFTAALLQ 637
Query: 799 LGSM 802
L S+
Sbjct: 638 LSSV 641
Score = 48.9 bits (115), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E C S LK L+ GKL S+ + +A + F D SRAE+ I
Sbjct: 703 LDSIWYKATEMCQSSRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWKLIA 762
Query: 974 NSIETVLRRNVEVRIILLP 992
+S++ +L N+E+RI +P
Sbjct: 763 SSLQFILGCNLELRINYVP 781
>gi|356563163|ref|XP_003549834.1| PREDICTED: uncharacterized protein LOC100808544 [Glycine max]
Length = 976
Score = 356 bits (914), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 191/363 (52%), Positives = 254/363 (69%), Gaps = 10/363 (2%)
Query: 448 GEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKT 507
G E LE RSLS K++P F +L+G N++ +SL+ IS GRI+ YLF GPRGTGKT
Sbjct: 280 GGEISPTLETPRSLSMKFRPKSFSDLVGHNVIGKSLLGAISTGRISSFYLFHGPRGTGKT 339
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
S ++IF+AALNC++ + KPCG CREC F G+S++ E+D D+V+ ++K+
Sbjct: 340 SASRIFAAALNCLSPLEQKPCGLCRECVLFFLGRSKHVKEIDSLRINRADKVKSLVKN-- 397
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
A +P S FKVF++DEC LL ++TW L LE VVF+ IT D+D +P S SR
Sbjct: 398 ACIPRVSSCFKVFIVDECQLLHAETWACLLNSLENVSPHVVFVMITPDLDKLPPSALSRA 457
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR 687
Q+Y F KIKD DI RL KI EE L E ALD IA + GSLRDAETMLDQLSLLGK+
Sbjct: 458 QRYHFAKIKDVDIAIRLEKICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKK 517
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
IT SLV+EL GV+S+++LL+LL+LA+S+DT+ TV RAREL+ + +DP+ L+SQLA+LIMD
Sbjct: 518 ITISLVHELTGVISDDELLDLLDLALSTDTSNTVIRARELVRTRIDPLQLISQLANLIMD 577
Query: 748 IIAGTYTIG--------GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+AG + +G R +EA+L++L AL++LSE EKQLR+S + TWFTA LLQL
Sbjct: 578 ILAGKFELGDSEIRRFCNRYTSEADLQKLSRALRILSETEKQLRISKNQTTWFTAALLQL 637
Query: 800 GSM 802
S+
Sbjct: 638 SSV 640
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E C S LK L+ GKL S+ + +A + F D SRAE+ I
Sbjct: 702 LDSIWYKATEMCQSNRLKTFLRKQGKLSSVCISQGRAVAELEFHHRDYVSRAEKSWRLIA 761
Query: 974 NSIETVLRRNVEVRIILLP 992
+S++ +L N+E+RI +P
Sbjct: 762 SSLQFILGCNLELRINCVP 780
>gi|358348981|ref|XP_003638519.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355504454|gb|AES85657.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 903
Score = 356 bits (913), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 190/374 (50%), Positives = 252/374 (67%), Gaps = 11/374 (2%)
Query: 447 NGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGK 506
NG E LE R LS K++P+ FD+L+GQ++VV+SL+ +S RI YLF GPRGTGK
Sbjct: 253 NGGESSPNLETPRMLSMKFRPLSFDDLVGQDMVVRSLLAALSSRRITSFYLFHGPRGTGK 312
Query: 507 TSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
TS +KIF+ ALNC++ + +PCG CREC F SG+S++ EVD D+V+ ++K+
Sbjct: 313 TSASKIFACALNCISNKKQRPCGLCRECVLFFSGRSKDVKEVDSVRINHTDQVKSLVKN- 371
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
A P S RFKVF+IDEC LL +TW + Q VF+ ITTD+D +P+S SR
Sbjct: 372 -ACTPPVSSRFKVFIIDECQLLNPETWACLSNNQDNISQHAVFVMITTDLDKLPQSAVSR 430
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
QKY F K++D +I +L KI EE L+ E ALDLIA + GS+RDAE MLDQLSLLGK
Sbjct: 431 AQKYYFPKVQDANIACKLEKICTEEGLDFEQAALDLIAARSCGSVRDAEIMLDQLSLLGK 490
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
+I SLV EL G+VS+++LL+LL+LA+S DT+ TV RARELM S +DP+ L+SQL +LIM
Sbjct: 491 KIKISLVYELTGIVSDDELLDLLDLALSPDTSNTVIRARELMRSRIDPLQLVSQLVNLIM 550
Query: 747 DIIAGTYTIGG---------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
DI+AG + GG R ++A+L +L HAL++ +EAEKQLR+S + TWFT LL
Sbjct: 551 DILAGNHENGGDEVRSKYSSRYTSKADLRKLSHALRIFTEAEKQLRISKNQSTWFTVALL 610
Query: 798 QLGSMHSPDLTQSG 811
QL S P G
Sbjct: 611 QLSSADYPSTDADG 624
>gi|356518927|ref|XP_003528127.1| PREDICTED: uncharacterized protein LOC100812040 [Glycine max]
Length = 979
Score = 355 bits (912), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 195/365 (53%), Positives = 255/365 (69%), Gaps = 11/365 (3%)
Query: 447 NGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGK 506
NG LE RSLS K++P F +L+GQN+VV+SL+ ISRGRI YLF GPRGTGK
Sbjct: 286 NGGGISPTLETPRSLSMKFRPKSFSDLVGQNVVVRSLLAAISRGRITSFYLFYGPRGTGK 345
Query: 507 TSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
TST+++F+AALNC++ + +PCG CREC SG++++ EVD ++V+ ++K+
Sbjct: 346 TSTSRMFAAALNCLSVVEKRPCGLCRECVLLFSGRNKDVKEVDSVTINRAEQVKSLIKN- 404
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
A +P S RFKVF+IDEC LL +TW + LE Q VVF+ IT D+D +PRS SR
Sbjct: 405 -ASIPPVSSRFKVFIIDECQLLNGETWASISNSLENLSQHVVFVMITPDLDKLPRSAVSR 463
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
Q+Y F K+KD DIV RL KI AEE L+ E DALD I + GS+RDAE MLDQ+SLLGK
Sbjct: 464 AQRYHFPKVKDADIVCRLEKICAEEGLDFEQDALDFIGAKSCGSVRDAEMMLDQMSLLGK 523
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
+I SL EL G+VS+++LL+LL+LA+SSDT+ TV RARELM S +DP+ L+SQLA+LIM
Sbjct: 524 KINISLAYELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLHLVSQLANLIM 583
Query: 747 DIIAGTYTIGG---------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
DI+AG GG R +EA+L++L +ALK+LSE EKQLR S + TWF LL
Sbjct: 584 DILAGKCENGGSDVRSRFSRRHNSEADLQKLNNALKILSETEKQLRNSKNQTTWFIVALL 643
Query: 798 QLGSM 802
QL S+
Sbjct: 644 QLSSV 648
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E CHS LK + GKL S+ + IA + F S+AE+ +I
Sbjct: 708 LDSIWYKATEMCHSSQLKTFFRNKGKLSSLHVDGSLAIAELEFHHRHHVSKAEKSWKAIA 767
Query: 974 NSIETVLRRNVEVRIILLP 992
+S++ +L N+E+RI P
Sbjct: 768 SSLQFILGCNIELRITYAP 786
>gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa]
gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa]
Length = 1190
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 258/755 (34%), Positives = 387/755 (51%), Gaps = 100/755 (13%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCGIP WS HRG + G S LSDT RKGS T HGR
Sbjct: 322 RNGCGIPWNWS--GIHHRGKTILDIAGRSLSCGLSDT--RKGS-------TASHGRDFPG 370
Query: 371 SVSNKRRMASRSAQGV--LPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRLDG 428
R +S + V LPLL G S+ G D GEL + A L
Sbjct: 371 MPVASDRSSSSTKSDVEALPLLVE-ASGSQESTDNAGWVHDY----SGELGIYADHLLKN 425
Query: 429 ---RRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVN 485
+S RS + ++ G + G +N L+Q+Y P F +L+GQN+ Q+L N
Sbjct: 426 DIDSDLASEARSGEQRKL----GRNQNGRHQN---LTQRYMPRTFRDLVGQNLAAQALSN 478
Query: 486 TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545
R ++ +Y+F GP GTGKTS A+IFS ALNC + + KPCGYC C GKSRN
Sbjct: 479 AAVRRKVGFLYVFYGPHGTGKTSCARIFSRALNCQSLEHPKPCGYCNSCISHDMGKSRNI 538
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
EV + + +L ++ + S +P +++VF+ D+C L W A K ++ P
Sbjct: 539 REVGPVSNFDFKSIIDLLDNM---IISQTPSQYRVFIFDDCDTLAPDCWSAISKVIDRAP 595
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
+RVVF+ + + +D +P I SRCQK+ F K+KD DI+ L+ IS++E+++++ DAL LIA
Sbjct: 596 RRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKLIA 655
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
+DGSLRDAE L+QLSLLG++I+ LV ELVG++S+EKL++LL+LA+S+DT TVK
Sbjct: 656 SRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLAISADTVNTVKNL 715
Query: 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR----------SLTEAELERLKHALKL 774
R +M++GV+P+ LMSQLA++I DI+AG+Y L++ ++E+L+ ALK
Sbjct: 716 RVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRNPLSKDDMEKLRQALKT 775
Query: 775 LSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVV 834
LSEAEKQLR+S+++ TW TA LLQL +PD +Q + +S + +
Sbjct: 776 LSEAEKQLRMSNDKLTWLTAALLQL----APD--------QQYLLPSSSTETSFNHSPLA 823
Query: 835 YKRMSGPQY---------MPQNAVSPASLREPVNGNSRHL------GEVLSRIDGHNSYS 879
M G MP N G S H+ G + S +
Sbjct: 824 LNNMGGRDIARKGGERVEMPNNK----------RGLSTHVRLENLPGGTSANFQNSGSTN 873
Query: 880 KPSHSRLKDAGALAVSQNGNI-------VGNTIITCRNSEKLGEIWAQCIERCHSKTLKQ 932
+ R ++A + SQ ++ V ++ ++ + EIW + +E+ ++++
Sbjct: 874 GINMDRKRNAASGMASQWTSVQTSDAVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMRE 933
Query: 933 LLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRR--NVEVRIIL 990
L GKL+S+S + + F K +AE+F + I + E+VL +E+R L
Sbjct: 934 FLYQEGKLISVSFGAAPTVQLI-FSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIRCEL 992
Query: 991 LPDGEASIHHGISNELPKGLKKTETTAAIEREGKA 1025
+ A H LP K + A++ E A
Sbjct: 993 NKETNAGFH------LPAASKIGSSQMAMDSEPNA 1021
>gi|357477253|ref|XP_003608912.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
gi|355509967|gb|AES91109.1| DNA polymerase III subunit gamma/tau [Medicago truncatula]
Length = 936
Score = 352 bits (904), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 193/365 (52%), Positives = 255/365 (69%), Gaps = 11/365 (3%)
Query: 448 GEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKT 507
G E LE RSLS K++P F++L+GQN+V +SL ISRGRIA YLF GPRGTGKT
Sbjct: 267 GSEISPTLETPRSLSMKFRPKSFNDLVGQNMVGKSLSGAISRGRIASFYLFHGPRGTGKT 326
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
S ++IF+AALNC++ ++ +PCG C EC F SG+S++ EVD D+ + ++K+
Sbjct: 327 SASRIFAAALNCISLEERRPCGLCSECVLFFSGRSKDVKEVDSLRINRPDKAKSLVKNAC 386
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
P +S R+KVF+IDEC LL +TW L L Q VVF+ IT D++ +PRS SR
Sbjct: 387 TTAPFSS-RYKVFIIDECQLLNKETWATLLNSLGVFSQHVVFVMITPDLEKLPRSAISRA 445
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR 687
Q+Y F KIKD DI +RL++I EE L E DALD IA + GSLRDAE MLDQLSLLGK+
Sbjct: 446 QRYHFTKIKDADIASRLKRICVEEGLESEQDALDFIAAKSCGSLRDAEMMLDQLSLLGKK 505
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
IT SLV EL GV+S+++LL+LL+L++SSDT+ TV RAREL+ S +DP+ L+SQLA+LIMD
Sbjct: 506 ITISLVYELTGVISDDELLDLLDLSLSSDTSNTVIRARELLRSRIDPLQLISQLANLIMD 565
Query: 748 IIAGTYTIGGRS----------LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
I+AG + G L E+ +++L HAL++LSE EKQLR+S + TWFTA LL
Sbjct: 566 ILAGKCELTGSEIRRRFSDRHILAESSMQKLSHALRILSETEKQLRISKNQTTWFTAALL 625
Query: 798 QLGSM 802
QL S+
Sbjct: 626 QLSSL 630
Score = 42.7 bits (99), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E C SK LK L+ GKL S+ + + + F +RAE+ I
Sbjct: 689 LDCIWYKATEICESKRLKAFLRKQGKLSSVCINQGLAAVELEFHHRVYVARAEKSWKQIA 748
Query: 974 NSIETVLRRNVEVRIILLP 992
+S++ +L N+E+RI +P
Sbjct: 749 SSLQFILGCNIELRINHVP 767
>gi|356507313|ref|XP_003522412.1| PREDICTED: uncharacterized protein LOC100819111 [Glycine max]
Length = 952
Score = 351 bits (900), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 192/358 (53%), Positives = 250/358 (69%), Gaps = 11/358 (3%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
LE RSLS K++P F +L+GQN+VV+SL+ ISRGRI YLF GPRGTGKTS +++F
Sbjct: 293 TLETPRSLSMKFRPKSFSDLVGQNVVVRSLLGAISRGRITSFYLFYGPRGTGKTSASRMF 352
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+AALNC++ + +PCG CREC SG+S++ EVD D+V+ ++K+ A +P
Sbjct: 353 AAALNCLSVVEQRPCGLCRECVLLFSGRSKDVKEVDSVRINRADQVKSLIKN--ASIPPV 410
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S RFKVF IDEC LL +TW + LE Q VVF+ IT D+D +P S SR Q+Y F
Sbjct: 411 SSRFKVFFIDECQLLNGETWASISNSLENLSQYVVFVMITPDLDKLPPSAVSRAQRYHFP 470
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
K+KD DIV RL KI AEE L E DALD IA + GS+RDAE MLDQ+SLLGK+I SL
Sbjct: 471 KVKDADIVCRLEKICAEEGLEFEQDALDFIAAKSCGSVRDAEMMLDQMSLLGKKINISLA 530
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
EL G+VS+++LL+LL+LA+SSDT+ TV RARELM S +DP+ L+SQLA+LIMDI+AG
Sbjct: 531 YELTGIVSDDELLDLLDLALSSDTSNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKC 590
Query: 754 TIGGRSL---------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
GG + +EA+L++L +ALK+LS+ EK LR S + TWFT LLQL S+
Sbjct: 591 ENGGSEVRSRFSRRYSSEADLQKLNNALKVLSDTEKHLRFSKNQTTWFTVALLQLSSV 648
Score = 50.1 bits (118), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 42/79 (53%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + E CHS LK L+ GKL S+ + IA + F S+AE+ +I
Sbjct: 708 LDSIWYKATEMCHSGQLKNFLRKKGKLSSLHVDRSLAIAELEFHHRHHVSKAEKSWKAIA 767
Query: 974 NSIETVLRRNVEVRIILLP 992
+S++ +L N+E+RI P
Sbjct: 768 SSMQFILGCNIELRITYAP 786
>gi|297803640|ref|XP_002869704.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315540|gb|EFH45963.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 818
Score = 348 bits (894), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 192/380 (50%), Positives = 260/380 (68%), Gaps = 12/380 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSLSQK++P FDEL+GQ +VV+ L++TI RGRI VYLF GPRGTGKTST+KIF+AALN
Sbjct: 242 RSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTSTSKIFAAALN 301
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C++ ++PCG C EC + SG+ R+ ME D +R ++K+ A LP + RF
Sbjct: 302 CLSQAAHSRPCGLCSECKSYFSGRGRDVMETDSGKLNRPSYLRSLIKN--ASLPPVTSRF 359
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDEC LL +TW L L+ Q VFI +T++++ +PR++ SR QKY F+K+ D
Sbjct: 360 KVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQKYHFSKVCD 419
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI +L KI EE ++ + A+D IA +DGSLRDAE MLDQLSLLGKRIT+SL +L+
Sbjct: 420 ADISTKLAKICVEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRITTSLAYKLI 479
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT----- 752
GVVS+++LL+LL+LA+SSDT+ TV RARELM S +DPM L+SQLA++IMDIIAG
Sbjct: 480 GVVSDDELLDLLDLALSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDIIAGNSQESS 539
Query: 753 ----YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
R +E E+++L++ALK+LS+AEK LR S + TW T LLQL + S
Sbjct: 540 SATRLRFLTRHTSEEEMQKLRNALKILSDAEKHLRASKNQTTWLTVALLQLSNTDSSSFA 599
Query: 809 QSGSSRRQSSRTTEEDPSST 828
+ R Q S+ E +S+
Sbjct: 600 TDENGRNQISKDVELSSTSS 619
Score = 43.9 bits (102), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%)
Query: 912 EKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSS 971
E + +W + C S +LK+ L G+L S++ + V IA + F +RAE+
Sbjct: 640 ETVETVWKTVTDLCCSDSLKRFLWKRGRLTSLTVDKGVAIAELEFYTPQHVARAEKSWKL 699
Query: 972 ITNSIETVLRRNVEVRIILL 991
I +S ++VL NVE+R+ L+
Sbjct: 700 IADSFQSVLGCNVEIRMNLV 719
>gi|225443722|ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249702 [Vitis vinifera]
Length = 1161
Score = 348 bits (893), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 214/550 (38%), Positives = 317/550 (57%), Gaps = 51/550 (9%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQT--MYHGRRR 368
R GCGIP WS+ HRG + G S LSD+ R+G S+ G M
Sbjct: 324 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLSCGLSDSRLRRGGSVPQGRDVSDMPMASDH 381
Query: 369 SSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEA--LSRL 426
SS+ +++S LPLL + + D GEL + A L R
Sbjct: 382 SSA-------STKSDAEALPLLVEASGSQESTENAAWVHDYS-----GELGIFADNLLRH 429
Query: 427 D-GRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVN 485
D +S RS D + + + +L+QKY P F L+GQN+V Q+L N
Sbjct: 430 DIDSDLASEARSGDQRKFRGYRQDRHQ-------NLTQKYMPRTFGGLVGQNLVAQALSN 482
Query: 486 TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545
+ + ++ +Y+F GP GTGKTS A+IF+ ALNC + + KPCG+C C GKSRN
Sbjct: 483 AVVKRKVGFLYVFYGPHGTGKTSCARIFARALNCPSMEHPKPCGFCNSCIAHDMGKSRNI 542
Query: 546 MEVDGTNKKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
EV + + + +L ++ A LP+ +++VF+ D+C L W A K ++ P
Sbjct: 543 REVGPVSNLDFEGIMNLLDNVIASQLPT---QYRVFIFDDCDTLSPDCWSAISKLIDRAP 599
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
+R+VF+ +++ +D +P I SRCQK+ F K+KD DI+ L+ I+ +E+L ++ DAL LIA
Sbjct: 600 RRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLIA 659
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRA 724
+DGSLRDAE L+QLSLLG+RI+ LV ELVG++S+EKL++LL+LA+S+DT TVK
Sbjct: 660 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 719
Query: 725 RELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLKHALKL 774
RE+M++GV+P+ LMSQLA++I DI+AG+Y ++L++ ++E+L+ ALK
Sbjct: 720 REIMETGVEPLALMSQLATVITDILAGSYDFTKERLRRKFFRRQALSKEDMEKLRQALKT 779
Query: 775 LSEAEKQLRLSSERCTWFTATLLQLGSMHSPD--LTQSGSSRRQSSRTTEEDPSSTSREA 832
LSEAEKQLR+S+++ TW TA LLQL +PD SS S + P+++S +
Sbjct: 780 LSEAEKQLRMSNDKLTWLTAALLQL----APDQQYMLPSSSADTSFNHSPLVPNNSSAHS 835
Query: 833 VVYKRMSGPQ 842
R+SG Q
Sbjct: 836 ADTNRLSGKQ 845
Score = 45.1 bits (105), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 883 HSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLS 942
HS L + A S + N + I + +++ EIW + +E+ TLK+ L GKL+S
Sbjct: 823 HSPLVPNNSSAHSADTNRLSGKQIPGKVRKEIEEIWLEVLEKIQVDTLKEFLYKEGKLIS 882
Query: 943 ISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+S + + F KS+AE++ I + E++L V + I
Sbjct: 883 VS-IGAAPTVQLMFSSHLTKSKAEKYRGHILRAFESILGSPVTIEI 927
>gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 1105
Score = 347 bits (891), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 234/701 (33%), Positives = 358/701 (51%), Gaps = 124/701 (17%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCGIP WS+ HRG + G S LSD+ RKG G +
Sbjct: 322 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLSCGLSDSRLRKG-----GMASHDRDAPNMP 374
Query: 371 SVSNKRRMASRSAQGVLPLLA---------NNGDGRAGSSIGTGRSDDELSTNFGELDLE 421
S+ +++S LPLL +N S G D L N + DL
Sbjct: 375 LASDYSCSSTKSDAEALPLLVEASLSQESTDNAGWVHDYSGELGIYADHLLKNDVDSDLA 434
Query: 422 ALSRLDGR---RWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNI 478
+ +R G+ R + + R Q+ +QKY P F +L+GQN+
Sbjct: 435 SEARSGGQHKLRRNHNSRHQN---------------------FTQKYMPRTFRDLVGQNL 473
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538
V Q+L N + R ++ +Y+F GP GTGKTS A+IF+ ALNC + + KPCGYC C
Sbjct: 474 VAQALSNAVVRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGYCNSCISHD 533
Query: 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLS-AGLPSASPRFKVFVIDECHLLPSKTWLAFL 597
GKSRN EV + + +L ++ + LPS +++VF+ D C L S W A
Sbjct: 534 MGKSRNIREVGPVSNFDFGNIVDLLDNMIISHLPS---QYRVFIFDGCDTLSSDCWSAIS 590
Query: 598 KFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEP 657
K ++ P+RVVF+ +++ +D +P I SRCQK+ F K+KD DI+ L+ I+++E+++++
Sbjct: 591 KVIDRAPRRVVFVLVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIASKEDIDIDK 650
Query: 658 DALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDT 717
DAL LIA +DGSLRDA+ L+QLSLLG +I+ LV ELVG++S+EKL++LL+LA+S+DT
Sbjct: 651 DALKLIASRSDGSLRDAQMTLEQLSLLGLKISVPLVQELVGLISDEKLVDLLDLALSADT 710
Query: 718 AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELER 767
TVK R +M++GV+P+ LMSQLA++I DI+AG+Y + L++ ++E+
Sbjct: 711 VNTVKHLRVIMETGVEPLALMSQLATVITDILAGSYNFTKERHRRKFFRRQPLSKEDMEK 770
Query: 768 LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSS 827
L+ ALK LSEAEKQLR+S+++ TW TA LLQL +PD PSS
Sbjct: 771 LRQALKTLSEAEKQLRMSNDKLTWLTAALLQL----APD-------------QQYMLPSS 813
Query: 828 TSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLK 887
++ + +K PQ+ +A+S ++R +NG
Sbjct: 814 STETSFNHKTGVAPQWA--SALSSDTVR--INGKQ------------------------- 844
Query: 888 DAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVE 947
++ + + EIW + I + ++K+ L GKL+S+S
Sbjct: 845 ------------------VSGKTRKGYEEIWLEVIGKIQFNSIKEFLYQEGKLISVS-FG 885
Query: 948 RVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+ F K +AE+F + I + E+V + + I
Sbjct: 886 AAPTVQLMFSSHLTKLKAEKFRAHILQAFESVFGSQITLEI 926
>gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo]
Length = 1170
Score = 345 bits (886), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 259/830 (31%), Positives = 411/830 (49%), Gaps = 96/830 (11%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCG+P WS+ HRG + G S +SD++ RK C G +
Sbjct: 323 RNGCGMPWNWSR--IHHRGKSFLDMAGRSFSCGISDSMLRK-----CSPTARGRGISGTP 375
Query: 371 SVSNKRRMASRSAQGVLPLLAN---------NGDGRAGSSIGTGRSDDELSTNFGELDLE 421
S+ +++ LPLL N + S G D + + DL
Sbjct: 376 IASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGELGIFADNYIKHEVDSDLA 435
Query: 422 ALSRLDGRRWS-SSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVV 480
+ +R RR + RS+ ++L+QKY P F +L+GQ++V
Sbjct: 436 SEARCSNRRRTRGHHRSRH-------------------QNLTQKYMPRTFKDLVGQHLVA 476
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
Q+L N + + ++ +Y+F GP GTGKTS A+IF+ ALNC + + +KPCG C C + G
Sbjct: 477 QALSNAVLKKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMG 536
Query: 541 KSRNFMEVDGTNKKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLPSKTWLAFLKF 599
KSRN EV + + + +L H+ A LPS ++ VF+ D+C + W A K
Sbjct: 537 KSRNIREVVPVSNLDFESITELLDHMIASQLPS---QYTVFIFDDCDSFSANCWSAITKV 593
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659
++ P+R+VF+ + + +D +P I SRCQK+ F K+KD D++ L+ I+ +ENL ++ DA
Sbjct: 594 IDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDA 653
Query: 660 LDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAE 719
L LI +DGSLRDAE L+QLSLLG+RI+ L+ ELVG++S+EKL++LL+LA+S+DT
Sbjct: 654 LKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVN 713
Query: 720 TVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLK 769
TVK R +++SGV+PM LMSQ+A++I DI+AG+Y + L++ ++E+L+
Sbjct: 714 TVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLR 773
Query: 770 HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSS-- 827
ALK LSEAEKQLR+S+++ TW TA LLQL L+ S + S + S
Sbjct: 774 QALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLSSSAETSFNHSPLALNNVSGRG 833
Query: 828 TSREAVVYKRMS-GPQYMPQNAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRL 886
SR + ++S G + +P + V A + + N G L R H+ +
Sbjct: 834 ASRNVDQHGQISAGEKGLPTD-VKFAGHSDSFD-NRISKGISLDR-KRHSGVCVSPQRTI 890
Query: 887 KDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEV 946
A L S + G T + + EIW + + + ++K+ L G L S+S
Sbjct: 891 GTATDLMKSSGKQVSGTT------HKAIEEIWLEVLGKIRINSIKEFLIQEGTLASVSFG 944
Query: 947 ERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIILLPDGEASIHHGISNEL 1006
+ + F + KS+AE+ I + E+ L +V + I + ++ + S L
Sbjct: 945 AAPTVRLI-FNSHNAKSKAEKLREQILQAFESALGSSVIIEIRCESKRDTTVGNHSSVTL 1003
Query: 1007 PKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQIPVNVARKVSRGSFNELEGKFKG-- 1064
P + + G + + N S + Q+P + +V RG E++ +
Sbjct: 1004 P-----------VSKNGLLQIRDISGNMSQA---QLPHYGSGEVGRGEIVEIDASPREAH 1049
Query: 1065 ----------EDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESIIREQ 1104
ED S + NS +SS RR+ R +SI+R +
Sbjct: 1050 NQREPNQRNLEDSQGEVS--VSRKNSTMSSISERREAGAQSRSQSIVRSK 1097
>gi|326530674|dbj|BAK01135.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1088
Score = 345 bits (884), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 211/554 (38%), Positives = 319/554 (57%), Gaps = 48/554 (8%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSL+QKY P F +++GQ++VVQ+L N I + +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 343 RSLTQKYAPRTFKDVVGQSLVVQALSNAILKRKIGSVYVFYGPHGTGKTSCARVFAKALN 402
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH-LSAGLPSASPRF 577
C + + KPC C C GKSR+ ME+ LD + IL + + + LP+
Sbjct: 403 CHSPEHPKPCDTCASCIAHNLGKSRSLMEIGPVGNIDLDSIVDILDNVILSPLPA---HH 459
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++D+C+ LP TW K +E P+RVVF+ I+ ++D +P I SRCQK+ F K+K+
Sbjct: 460 RVFIVDDCNTLPPDTWSVISKVVERAPRRVVFVLISPNLD-LPHIIMSRCQKFFFPKLKE 518
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DIV L+ I + L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RIT LV EL
Sbjct: 519 CDIVNTLQWICTSDGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRITMPLVQELA 578
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+VS++KL+ LL+LA+S+DTA TVK R++ ++GV+P+ LMSQLA++I DI+AGTYT
Sbjct: 579 GLVSDDKLVNLLDLALSADTANTVKALRDITETGVEPLSLMSQLATIITDILAGTYTFAQ 638
Query: 758 R----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS--- 804
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 639 ERIRRKFFKRPTLSKEDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYIL 698
Query: 805 PDLTQSGSSRRQSSRTTEEDPS--STSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS 862
P + S S + S + D + ST+ +Y +GP + R P N
Sbjct: 699 PSSSTSTSFNQGLSTYPDGDIARNSTTNHKEIY---AGPHGLS---------RTPDQENQ 746
Query: 863 RHLGEVLSRIDGH---NSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGE--- 916
++ L H N+Y RL++ + +G+++ + K +
Sbjct: 747 QYRNANLGICSSHVTANTYH--GGRRLREH-----TPDGHVLSTSATRINEGSKCSKTDN 799
Query: 917 --IWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITN 974
IW +E S +L++++ G+++S+S + + F KS+AE+ I
Sbjct: 800 EMIWQAVLENVQSDSLRKMMAKEGRVISVS-LGTAPTVQLMFSSHVNKSKAEKSRGQILQ 858
Query: 975 SIETVLRRNVEVRI 988
+ E+VL + + I
Sbjct: 859 AFESVLSSAIILEI 872
>gi|357128701|ref|XP_003566008.1| PREDICTED: uncharacterized protein LOC100843955 [Brachypodium
distachyon]
Length = 1097
Score = 343 bits (879), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 175/352 (49%), Positives = 243/352 (69%), Gaps = 13/352 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSL+QKY P F +++GQ++VVQ+L N I R +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 356 RSLTQKYAPRTFKDVVGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALN 415
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ +E+ LD + IL ++ L A + +
Sbjct: 416 CHSGEHPRPCDLCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVM--LSPAPAQHR 473
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF++D+C+ LP TW K +E P+RVVFI I+ ++D +P I SRCQK+ F K+K+
Sbjct: 474 VFIVDDCNTLPPDTWSVISKVVERAPRRVVFILISPNLD-LPHIIMSRCQKFFFPKLKEC 532
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ I + L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG
Sbjct: 533 DIVNTLQWICTSDGLDVDRDALRLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVG 592
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS++KL+ LL+LA+S+DTA TVK R++ ++GV+P+ LMSQLA++I DI+AGTYT
Sbjct: 593 LVSDDKLVNLLDLALSADTANTVKTLRDITETGVEPLSLMSQLATIITDILAGTYTFTQE 652
Query: 759 ----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+L++ ++ERL+ ALK LSEAEKQLRLS+++ TW TA LLQL
Sbjct: 653 RIRRRFFKRPTLSKEDMERLRQALKTLSEAEKQLRLSNDKMTWLTAALLQLA 704
>gi|297791151|ref|XP_002863460.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297309295|gb|EFH39719.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 970
Score = 341 bits (875), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 239/686 (34%), Positives = 357/686 (52%), Gaps = 137/686 (19%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCGIP WS+ HRG + G S +SD+ RKG GR S
Sbjct: 240 RNGCGIPFNWSR--IHHRGKTFLDIAGRSLSCGMSDSKGRKGE----------LGRPMLS 287
Query: 371 SVSNKRRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNF-GELDLEALSRLDGR 429
S+ R AS PLL ++ + ++E ++ GEL + A + L
Sbjct: 288 DSSSSDREAS-------PLLVDSAE------------NEEWVHDYSGELGIFADNLLKNG 328
Query: 430 RWSSSCRSQDGLEIVALNGEEEEGVLENIR---SLSQKYKPIFFDELIGQNIVVQSLVNT 486
+ S G ++ +N R S +QKY P F +L+GQN+VVQ+L N
Sbjct: 329 KDS---------------GFGKKSSRKNARWHQSFTQKYAPRTFRDLLGQNLVVQALSNA 373
Query: 487 ISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFM 546
+++ R+ +Y+F GP GTGKTS A+IF+ ALNC +T+Q+KPCG C C + GK+R
Sbjct: 374 VAKRRVGLLYVFHGPNGTGKTSCARIFARALNCHSTEQSKPCGVCGSCVSYDGGKNRYIR 433
Query: 547 EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQR 606
E+ K D + K + + VF+ D+C + + W A K ++ P+R
Sbjct: 434 EMGPV--KSFDFENLLDK---MNIRQQQRQQLVFIFDDCDTMSTDCWNALSKIVDRAPRR 488
Query: 607 VVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALN 666
VVFI + + +D +P I SRCQK+ F K+KD DI+ L+ I+++E +++E DAL L+A
Sbjct: 489 VVFILVCSSLDVLPHIIVSRCQKFFFPKLKDADIINSLQLIASKEEIDIEKDALKLVASR 548
Query: 667 ADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARE 726
+DGSLRDAE L+QLSLLG R++ LV E+VG++S+EKL++LL+LA+S+DT TVK R
Sbjct: 549 SDGSLRDAEMTLEQLSLLGTRVSVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRI 608
Query: 727 LMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLKHALKLLS 776
+M++G++P+ LMSQLA++I DI+AG+Y + L++ ++E+LK ALK LS
Sbjct: 609 IMETGLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLS 668
Query: 777 EAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYK 836
E+EKQLR+SS++ TW TA LLQL +PD
Sbjct: 669 ESEKQLRVSSDKLTWLTAALLQL----APD------------------------------ 694
Query: 837 RMSGPQYM-PQNAVSPASLRE-PVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAV 894
QY+ P ++ + AS P+ +D S PS+ DA A
Sbjct: 695 ----KQYLLPHSSSADASFNHTPI-------------MD-----SDPSN----DAVA-GT 727
Query: 895 SQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYV 954
++G++ G +C+N + +IW IE+ LK+ L GK+ SIS + +
Sbjct: 728 RRDGSMQG---FSCKNRPSVEDIWLAVIEKVRVNGLKEFLYKEGKIFSIS-IGSAPTVQL 783
Query: 955 AFGDGDIKSRAERFLSSITNSIETVL 980
F KS AE F +I + E VL
Sbjct: 784 LFNSPIAKSTAENFKDNILKAFEAVL 809
>gi|449479207|ref|XP_004155535.1| PREDICTED: uncharacterized protein LOC101226355 [Cucumis sativus]
Length = 1120
Score = 340 bits (872), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 195/511 (38%), Positives = 293/511 (57%), Gaps = 55/511 (10%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCG+P WS+ HRG + G S +SD++ RK C G +
Sbjct: 323 RNGCGMPWNWSR--IHHRGKSFLDMAGRSFSCGISDSMLRK-----CSPTARGRGISGTP 375
Query: 371 SVSNKRRMASRSAQGVLPLLAN---------NGDGRAGSSIGTGRSDDELSTNFGELDLE 421
S+ +++ LPLL N + S G D + + DL
Sbjct: 376 IASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQLDYSGELGIFADNYIKHEVDSDLA 435
Query: 422 ALSRLDGRRWS-SSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVV 480
+ +R RR + RS+ ++L+QKY P F +L+GQ++V
Sbjct: 436 SEARCSNRRRTRGHHRSRH-------------------QNLTQKYMPRTFKDLVGQHLVA 476
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
Q+L N + R ++ +Y+F GP GTGKTS A+IF+ ALNC + + +KPCG C C + G
Sbjct: 477 QALSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMG 536
Query: 541 KSRNFMEVDGTNKKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLPSKTWLAFLKF 599
KSRN EV + + + +L H+ A LPS ++ VF+ D+C + W A K
Sbjct: 537 KSRNIREVVPVSNLDFESITELLDHMIASQLPS---QYTVFIFDDCDSFSANCWSAITKV 593
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDA 659
++ P+R+VF+ + + +D +P I SRCQK+ F K+KD D++ L+ I+ +ENL ++ DA
Sbjct: 594 IDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDA 653
Query: 660 LDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAE 719
L LI +DGSLRDAE L+QLSLLG+RI+ L+ ELVG++S+EKL++LL+LA+S+DT
Sbjct: 654 LKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVN 713
Query: 720 TVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLK 769
TVK R +++SGV+PM LMSQ+A++I DI+AG+Y + L++ ++E+L+
Sbjct: 714 TVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLR 773
Query: 770 HALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 774 QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 804
>gi|449433559|ref|XP_004134565.1| PREDICTED: uncharacterized protein LOC101212118 [Cucumis sativus]
Length = 1120
Score = 340 bits (871), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 195/513 (38%), Positives = 291/513 (56%), Gaps = 59/513 (11%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSS 370
R GCG+P WS+ HRG + G S +SD++ RK C G +
Sbjct: 323 RNGCGMPWNWSR--IHHRGKSFLDMAGRSFSCGISDSMLRK-----CSPTARGRGISGTP 375
Query: 371 SVSNKRRMASRSAQGVLPLLAN---------NGDGRAGSSIGTGRSDDELSTNFGELDLE 421
S+ +++ LPLL N + S G D + + DL
Sbjct: 376 IASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGELGIFADNYIKHEVDSDLA 435
Query: 422 ALSRLDGRRWSSS---CRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNI 478
+ +R RR + R Q+ L+QKY P F +L+GQ++
Sbjct: 436 SEARCSNRRRTRGHHRARHQN---------------------LTQKYMPRTFKDLVGQHL 474
Query: 479 VVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFI 538
V Q+L N + R ++ +Y+F GP GTGKTS A+IF+ ALNC + + +KPCG C C +
Sbjct: 475 VAQALSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYD 534
Query: 539 SGKSRNFMEVDGTNKKGLDRVRYILKHLSAG-LPSASPRFKVFVIDECHLLPSKTWLAFL 597
GKSRN EV + + + +L H+ A LPS ++ VF+ D+C + W A
Sbjct: 535 MGKSRNIREVVPVSNLDFESITELLDHMIASQLPS---QYTVFIFDDCDSFSANCWSAIT 591
Query: 598 KFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEP 657
K ++ P+R+VF+ + + +D +P I SRCQK+ F K+KD D++ L+ I+ +ENL ++
Sbjct: 592 KVIDRAPRRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDK 651
Query: 658 DALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDT 717
DAL LI +DGSLRDAE L+QLSLLG+RI+ L+ ELVG++S+EKL++LL+LA+S+DT
Sbjct: 652 DALKLITSRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADT 711
Query: 718 AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELER 767
TVK R +++SGV+PM LMSQ+A++I DI+AG+Y + L++ ++E+
Sbjct: 712 VNTVKHLRLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEK 771
Query: 768 LKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
L+ ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 772 LRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 804
>gi|168053850|ref|XP_001779347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669263|gb|EDQ55854.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 356
Score = 339 bits (869), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 173/358 (48%), Positives = 247/358 (68%), Gaps = 18/358 (5%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E R+L+QKY+P F+E++GQN+ V+SL I +G++APVYLF GPRGTGKTS A++F+A
Sbjct: 4 EGPRTLNQKYRPKNFNEIVGQNVAVKSLSTAIVKGKVAPVYLFMGPRGTGKTSAARVFAA 63
Query: 516 ALNCVATDQTK-PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC++ D+ + PCG CREC +S + ++D + +R ++ + P A
Sbjct: 64 GLNCLSPDRARRPCGICRECGTMKLNRSADVRQIDAASNIDAASMRAMMGSFT---PHA- 119
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++KVF+++ C LL S W AFLK LEEPP+ VVFI ITTD + +P + SRCQK+ F+K
Sbjct: 120 -QYKVFIVEGCDLLSSDIWNAFLKVLEEPPRNVVFILITTDAERIPSTAFSRCQKFHFSK 178
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
+KD DIV+RL ++ +E+L+VE ALDLIA +DGSLRDAE LDQL LL + ++ S V+
Sbjct: 179 LKDADIVSRLELLATKEDLHVEVGALDLIAARSDGSLRDAEIFLDQLCLLDRNVSISSVH 238
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
ELVG++ K LELL+ A+S+D TV+ RE++ SGV+P+ L+SQL +LI DI+AG++
Sbjct: 239 ELVGLLPNNKTLELLDYALSADAVHTVRTMREVLISGVEPLSLVSQLGALITDILAGSFD 298
Query: 755 IG---------GRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+ R+L E+ E RL+ ALK+LSEAEKQLR+S+++ TW TA LLQ
Sbjct: 299 LHQEARKEGFFNRNLCESVKQEHLRLREALKILSEAEKQLRVSTDQATWLTAALLQFA 356
>gi|297740543|emb|CBI30725.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 336 bits (861), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 244/353 (69%), Gaps = 14/353 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L+QKY P F L+GQN+V Q+L N + + ++ +Y+F GP GTGKTS A+IF+ ALN
Sbjct: 268 QNLTQKYMPRTFGGLVGQNLVAQALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALN 327
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG-LPSASPRF 577
C + + KPCG+C C GKSRN EV + + + +L ++ A LP+ ++
Sbjct: 328 CPSMEHPKPCGFCNSCIAHDMGKSRNIREVGPVSNLDFEGIMNLLDNVIASQLPT---QY 384
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF+ D+C L W A K ++ P+R+VF+ +++ +D +P I SRCQK+ F K+KD
Sbjct: 385 RVFIFDDCDTLSPDCWSAISKLIDRAPRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKD 444
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI+ L+ I+ +E+L ++ DAL LIA +DGSLRDAE L+QLSLLG+RI+ LV ELV
Sbjct: 445 ADIIYTLQWIATKEDLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 504
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G++S+EKL++LL+LA+S+DT TVK RE+M++GV+P+ LMSQLA++I DI+AG+Y
Sbjct: 505 GLISDEKLVDLLDLALSADTVNTVKNLREIMETGVEPLALMSQLATVITDILAGSYDFTK 564
Query: 758 ----------RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
++L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 565 ERLRRKFFRRQALSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 617
Score = 42.7 bits (99), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 893 AVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIA 952
A S + N + I + +++ EIW + +E+ TLK+ L GKL+S+S +
Sbjct: 648 AHSADTNRLSGKQIPGKVRKEIEEIWLEVLEKIQVDTLKEFLYKEGKLISVS-IGAAPTV 706
Query: 953 YVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+ F KS+AE++ I + E++L V + I
Sbjct: 707 QLMFSSHLTKSKAEKYRGHILRAFESILGSPVTIEI 742
>gi|334186680|ref|NP_193617.3| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 1097
Score = 330 bits (846), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 208/532 (39%), Positives = 306/532 (57%), Gaps = 41/532 (7%)
Query: 317 QGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSN-K 375
+ CGIP WS+ HRG L + G S+ CG GR+ ++ N
Sbjct: 298 KACGIPFNWSR--IHHRG----------KTFLDKAGRSLSCGMSDSKGGRKGETNERNGS 345
Query: 376 RRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRL---DGRRWS 432
+M +S + ++G+ + +G +D + GEL + A S L + +
Sbjct: 346 DKMMIQSDDDSSSFIGSDGEA-LPLLVDSGENDGWVHDYSGELGIFADSLLKNDEDSDLA 404
Query: 433 SSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRI 492
S RS + + + +SL++KY P F +L+GQN+VVQ+L N ++R ++
Sbjct: 405 SEGRSGEKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKL 464
Query: 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN 552
+Y+F GP GTGKTS A+IF+ ALNC + +Q KPCG C C GKS N EV
Sbjct: 465 GLLYVFHGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVG 524
Query: 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-PQRVVFIF 611
+++ +L + + S SPR VF+ D+C L S W A K ++ P+ VVFI
Sbjct: 525 NYDFEKIMDLLDG-NVMVSSQSPR--VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFIL 581
Query: 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSL 671
+ + +D +P I SRCQK+ F K+KD DIV L+ I+++E + ++ DAL LIA +DGSL
Sbjct: 582 VCSSLDVLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSL 641
Query: 672 RDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
RDAE L+QLSLLG+RI+ LV ELVG+VS+EKL++LL+LA+S+DT TVK R +M++
Sbjct: 642 RDAEMTLEQLSLLGQRISVPLVQELVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETS 701
Query: 732 VDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLKHALKLLSEAEKQ 781
V+P+ LMSQLA++I DI+AG+Y + L + ++E+L+ ALK LSEAEKQ
Sbjct: 702 VEPLALMSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQ 761
Query: 782 LRLSSERCTWFTATLLQLGSMHSPD---LTQSGSSRRQSSRTTEE---DPSS 827
LR+S+++ TW TA LLQL +PD L Q S+ R + + DPSS
Sbjct: 762 LRVSNDKLTWLTAALLQL----APDQNYLLQRSSTADTGGRESSDHHLDPSS 809
Score = 40.4 bits (93), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 909 RNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERF 968
+N + EIW + IE+ L++ L G+++S++ + ++ F KS AE+F
Sbjct: 828 KNRPAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLN-LGSAPTVHLMFSSPLTKSTAEKF 886
Query: 969 LSSITNSIETVLRRNVEVRI 988
S I + E VL V + I
Sbjct: 887 RSHIMQAFEAVLESPVTIEI 906
>gi|334188215|ref|NP_001190476.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007906|gb|AED95289.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 956
Score = 328 bits (842), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 196/518 (37%), Positives = 290/518 (55%), Gaps = 60/518 (11%)
Query: 319 CGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVS 373
CGIP WS+ HRG + G S +SD+ RKG + M+
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA----GTPMFSD-------- 285
Query: 374 NKRRMASRSAQGVLPLLANNGDGRA---GSSIGTGRSDDELSTNFGELDLEALSRLDGRR 430
+S S + LPLL ++ D S G D L N + + S R
Sbjct: 286 -----SSSSDREALPLLVDSADNEEWVHDYSGELGIFADNLLKNGKDSVIGKKSSRKNTR 340
Query: 431 WSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRG 490
W +S +QKY P F +L+GQN+VVQ+L N I++
Sbjct: 341 WH--------------------------QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKR 374
Query: 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG 550
R+ +Y+F GP GTGKTS A++F+ ALNC +T+Q+KPCG C C + GK+R E+
Sbjct: 375 RVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGP 434
Query: 551 TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610
K D + K + + V + D+C + + W K ++ P+RVVF+
Sbjct: 435 V--KSFDFENLLDK---TNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFV 489
Query: 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670
+ + +D +P I SRCQK+ F K+KD DI+ L+ I+++E ++++ DAL L+A +DGS
Sbjct: 490 LVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGS 549
Query: 671 LRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDS 730
LRDAE L+QLSLLG RI+ LV E+VG++S+EKL++LL+LA+S+DT TVK R +M++
Sbjct: 550 LRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMET 609
Query: 731 GVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCT 790
G++P+ LMSQLA++I DI+AG+Y L++ ++E+LK ALK LSE+EKQLR+S+++ T
Sbjct: 610 GLEPLALMSQLATVITDILAGSYDFTKDQLSKEDMEKLKQALKTLSESEKQLRVSNDKLT 669
Query: 791 WFTATLLQLGSMHSPDLTQSGSSRRQSSRT--TEEDPS 826
W TA LLQL L S S+ + T T+ DPS
Sbjct: 670 WLTAALLQLAPDKQYLLPHSSSADASFNHTPLTDSDPS 707
>gi|357130892|ref|XP_003567078.1| PREDICTED: uncharacterized protein LOC100837374 [Brachypodium
distachyon]
Length = 1063
Score = 325 bits (832), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 211/518 (40%), Positives = 298/518 (57%), Gaps = 60/518 (11%)
Query: 316 RQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSI-----------LCGS 359
R CGIP WS+ HRG + G S LSD G L G+
Sbjct: 195 RNVCGIPWNWSRL--HHRGKSILDLAGRSLSCGLSDPKSAAGRESEAAAATASREHLSGA 252
Query: 360 QTMYHGRRRSSSVSNKRRMASRSAQG-VLPLLANNGDGRAGSSIG--TGRSDDEL---ST 413
+ V ++R +S S+ LPLL A + IG G EL S
Sbjct: 253 HSSLF------PVKSERLPSSTSSDSHALPLLVEAATSCARNGIGGMAGSYSGELGIFSN 306
Query: 414 NFGELDLEALSRL-DGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDE 472
E+D + LS G+ S RS+ G RSL+QK+ P F E
Sbjct: 307 QSSEMDFDFLSEARSGQNSWGSWRSRSGRH----------------RSLTQKFAPRTFKE 350
Query: 473 LIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCR 532
++GQ +VVQ+L N + R +I VY+F GP GTGKTS A++F+ ALNC + + +PC C
Sbjct: 351 VVGQGLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSAEHPRPCNSCT 410
Query: 533 ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKT 592
C GKSR+ ME+ +D + +L ++ L A ++VF+ D+C LP+ T
Sbjct: 411 SCIAHNVGKSRSLMEIGPVGNIDMDGIVDVLDNVM--LSPAPSHYRVFIFDDCDTLPADT 468
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
W K ++ P+RVVFI ++ ++D +P I SRCQK+ F K+K+ DIV LR IS E+
Sbjct: 469 WSIISKVIDRSPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNTLRWISTSES 527
Query: 653 LNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712
L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV +LVG+VS++KL++LL+LA
Sbjct: 528 LDVDKDALRLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQQLVGLVSDDKLVDLLDLA 587
Query: 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR----------SLTE 762
+S+DT TVK R++ ++GV+P+ LMSQLA++I DI+AG+YT +L++
Sbjct: 588 LSADTVNTVKTLRDITEAGVEPLALMSQLATIITDILAGSYTFARERLRRKFFKRPTLSK 647
Query: 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL
Sbjct: 648 DDMEKLRLALKTLSEAEKQLRVSNDKATWLTAALLQLA 685
>gi|222625938|gb|EEE60070.1| hypothetical protein OsJ_12890 [Oryza sativa Japonica Group]
Length = 1050
Score = 324 bits (830), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 251/717 (35%), Positives = 371/717 (51%), Gaps = 87/717 (12%)
Query: 300 LNDNDDAMDD-HLDLP---GRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSD---T 347
D +D +D+ +P R CGIP WS+ HRG + G + LSD
Sbjct: 193 FRDGEDGLDELQQHVPPQDSRNVCGIPWNWSRL--HHRGKSILDMAGRSLACGLSDPKSA 250
Query: 348 LRRKGSSILCGSQTMYHGRRRSSSVSNKRRMASRSAQGVL-PLLANNG-DGRAGSSIGTG 405
RK + S+ +G V ++R +S S+ PLL G IG
Sbjct: 251 AGRKSEAGAGASRGHLNGSHSLFPVKSERLASSTSSDSDALPLLVEAAATGARNGGIGGS 310
Query: 406 RSDDE--LSTNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQ 463
S + S E++ + LS +GR S SQ G G RSL+Q
Sbjct: 311 YSGELGIFSNQTSEMESDLLS--EGRSGHKSRGSQHG------RGRH--------RSLTQ 354
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
K+ P F +++GQ++VVQ+L N + R +I VY+F GP GTGKTS A++F+ ALNC + +
Sbjct: 355 KFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPE 414
Query: 524 QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVID 583
+PC C C GKSR+ ME+ +D + +L ++ L A ++VF+ D
Sbjct: 415 HPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVM--LSPAPSHYRVFIFD 472
Query: 584 ECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVAR 643
+C LP+ TW K ++ P+RVVFI ++ ++D +P I SRCQK+ F K+K+ DIV
Sbjct: 473 DCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKECDIVNT 531
Query: 644 LRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEE 703
L+ IS E+L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG+VS++
Sbjct: 532 LQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVSDD 591
Query: 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR----- 758
KL++LL+LA+S+DT TVK R++ ++GVDP+ LMSQLA++I DI+AG+YT
Sbjct: 592 KLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRERLRRK 651
Query: 759 -----SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L S S+
Sbjct: 652 FFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLPSSSST 711
Query: 814 RRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV--NGNSRHLGEVLSR 871
P R+ ++ S ++ A + R PV NS L R
Sbjct: 712 SLNHGVLAGSFP---DRDMAIH---SALEHNGNMASTSYRERRPVEHTSNSHLLSTSAPR 765
Query: 872 IDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLK 931
+ + SK + N +I W +E S TL+
Sbjct: 766 ANEQSRNSK--------------------IENELI-----------WHAVLESIQSDTLR 794
Query: 932 QLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+++ G+L S+S + + F KS+AE + I + E+VLR + + I
Sbjct: 795 KIMAKEGRLSSVS-LGTAPTVQLIFSSRVNKSKAENYRGQILQAFESVLRSAIILEI 850
>gi|218189003|gb|EEC71430.1| hypothetical protein OsI_03625 [Oryza sativa Indica Group]
Length = 815
Score = 323 bits (829), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 207/542 (38%), Positives = 308/542 (56%), Gaps = 53/542 (9%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSL+QK+ P F +++GQ++VVQ+L N + R +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 116 RSLTQKFAPKAFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALN 175
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ ME+ +D + +L ++ L A ++
Sbjct: 176 CHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVM--LSPAPSHYR 233
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF+ D+C LP+ TW K ++ P+RVVFI ++ ++D +P I SRCQK+ F K+K+
Sbjct: 234 VFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKEC 292
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ IS E+L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG
Sbjct: 293 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVG 352
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS++KL++LL+LA+S+DT TVK R++ ++GVDP+ LMSQLA++I DI+AG+YT
Sbjct: 353 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVDPLALMSQLATIITDILAGSYTFTRE 412
Query: 759 ----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L
Sbjct: 413 RLRRKFFKRPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKTTWLTAALLQLAPDKQYVLP 472
Query: 809 QSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV--NGNSRHLG 866
S S+ P R+ ++ S ++ A + R PV NS L
Sbjct: 473 SSSSTSLNHGVLAGSFP---DRDMAIH---SALEHNGNMASTSYRERRPVEHTSNSHLLS 526
Query: 867 EVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCH 926
R + + SK + N +I W +E
Sbjct: 527 TSAPRANEQSRNSK--------------------IENELI-----------WHAVLESIQ 555
Query: 927 SKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEV 986
S TL++++ G+L S+S + + F KS+AE + I + E+VLR + +
Sbjct: 556 SDTLRKIMAKEGRLSSVS-LGTAPTVQLIFSSRVNKSKAENYREQILQAFESVLRSAIIL 614
Query: 987 RI 988
I
Sbjct: 615 EI 616
>gi|242058597|ref|XP_002458444.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
gi|241930419|gb|EES03564.1| hypothetical protein SORBIDRAFT_03g033660 [Sorghum bicolor]
Length = 1026
Score = 323 bits (828), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 211/529 (39%), Positives = 302/529 (57%), Gaps = 64/529 (12%)
Query: 305 DAMDDHLDLPGRQGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCG---SQT 361
+ M L R CGIP WS+ HRG L G S+ CG S++
Sbjct: 197 EEMQQQLPQDSRNVCGIPWNWSRL--HHRG----------KSILDMAGRSLSCGLSDSKS 244
Query: 362 MYHGRRRSSSVSNKRRMASRSAQGV---------------LPLLANNGDGRAGSSIG--T 404
+ ++ S R ASR V LPLL A + IG +
Sbjct: 245 AAGRKSEEAAASGGRVNASRPLFPVKSERLASSTSSDSDALPLLVEAATSGARNRIGAIS 304
Query: 405 GRSDDEL---STNFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSL 461
G EL S E+D + LS + + S SQ G G RSL
Sbjct: 305 GSYSGELGIFSNQTSEMDSDLLS--ESQSGQKSHASQHG------RGRH--------RSL 348
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
+QK+ P F +++GQ++VVQ+L N I R +I VY+F GP GTGKTS A++F+ ALNC++
Sbjct: 349 TQKFAPKTFKDVVGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALNCLS 408
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
++ +PC C C GKSR+ ME+ +D + +L ++ L A ++VF+
Sbjct: 409 SEHPRPCDSCTSCIAHNLGKSRSLMEIGPVGNIDMDGIVDVLDNVM--LSPAPSHYRVFI 466
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
D+C LP TW A K ++ P+RVVFI ++ +++ +P I SRCQK+ F K+++ DIV
Sbjct: 467 FDDCDTLPPDTWSAISKVVDRAPRRVVFILVSPNLE-LPHIILSRCQKFFFPKLRESDIV 525
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
L+ I E+L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG+VS
Sbjct: 526 NTLQWICTSESLDVDKDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVGLVS 585
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR--- 758
++KL++LL+LA+S+DT TVK R++ ++GV+P+ LMSQLA++I DI+AG+Y
Sbjct: 586 DDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGSYAFTRERPR 645
Query: 759 -------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+L++ ++E+L+ ALK LSEAEKQLR+SS++ TW TA LLQL
Sbjct: 646 RKFFKRPTLSKEDMEKLRQALKTLSEAEKQLRVSSDKATWLTAALLQLA 694
>gi|9758675|dbj|BAB09214.1| unnamed protein product [Arabidopsis thaliana]
Length = 900
Score = 323 bits (827), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 196/528 (37%), Positives = 291/528 (55%), Gaps = 70/528 (13%)
Query: 319 CGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVS 373
CGIP WS+ HRG + G S +SD+ RKG + M+
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA----GTPMFSD-------- 285
Query: 374 NKRRMASRSAQGVLPLLANNGDGRA---GSSIGTGRSDDELSTNFGELDLEALSRLDGRR 430
+S S + LPLL ++ D S G D L N + + S R
Sbjct: 286 -----SSSSDREALPLLVDSADNEEWVHDYSGELGIFADNLLKNGKDSVIGKKSSRKNTR 340
Query: 431 WSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRG 490
W +S +QKY P F +L+GQN+VVQ+L N I++
Sbjct: 341 WH--------------------------QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKR 374
Query: 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG 550
R+ +Y+F GP GTGKTS A++F+ ALNC +T+Q+KPCG C C + GK+R E+
Sbjct: 375 RVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGP 434
Query: 551 TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610
K D + K + + V + D+C + + W K ++ P+RVVF+
Sbjct: 435 V--KSFDFENLLDK---TNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFV 489
Query: 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670
+ + +D +P I SRCQK+ F K+KD DI+ L+ I+++E ++++ DAL L+A +DGS
Sbjct: 490 LVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGS 549
Query: 671 LRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDS 730
LRDAE L+QLSLLG RI+ LV E+VG++S+EKL++LL+LA+S+DT TVK R +M++
Sbjct: 550 LRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMET 609
Query: 731 GVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLKHALKLLSEAEK 780
G++P+ LMSQLA++I DI+AG+Y + L++ ++E+LK ALK LSE+EK
Sbjct: 610 GLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEK 669
Query: 781 QLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRT--TEEDPS 826
QLR+S+++ TW TA LLQL L S S+ + T T+ DPS
Sbjct: 670 QLRVSNDKLTWLTAALLQLAPDKQYLLPHSSSADASFNHTPLTDSDPS 717
>gi|4539401|emb|CAB37467.1| putative protein [Arabidopsis thaliana]
gi|7268676|emb|CAB78884.1| putative protein [Arabidopsis thaliana]
Length = 1057
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 208/546 (38%), Positives = 306/546 (56%), Gaps = 55/546 (10%)
Query: 317 QGCGIPCYWSKRTPKHRGVCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVSN-K 375
+ CGIP WS+ HRG L + G S+ CG GR+ ++ N
Sbjct: 298 KACGIPFNWSR--IHHRG----------KTFLDKAGRSLSCGMSDSKGGRKGETNERNGS 345
Query: 376 RRMASRSAQGVLPLLANNGDGRAGSSIGTGRSDDELSTNFGELDLEALSRL---DGRRWS 432
+M +S + ++G+ + +G +D + GEL + A S L + +
Sbjct: 346 DKMMIQSDDDSSSFIGSDGEALP-LLVDSGENDGWVHDYSGELGIFADSLLKNDEDSDLA 404
Query: 433 SSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRI 492
S RS + + + +SL++KY P F +L+GQN+VVQ+L N ++R ++
Sbjct: 405 SEGRSGEKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKL 464
Query: 493 APVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTN 552
+Y+F GP GTGKTS A+IF+ ALNC + +Q KPCG C C GKS N EV
Sbjct: 465 GLLYVFHGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVG 524
Query: 553 KKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEP-PQRVVFIF 611
+++ +L + + S SPR VF+ D+C L S W A K ++ P+ VVFI
Sbjct: 525 NYDFEKIMDLLDG-NVMVSSQSPR--VFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFIL 581
Query: 612 ITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSL 671
+ + +D +P I SRCQK+ F K+KD DIV L+ I+++E + ++ DAL LIA +DGSL
Sbjct: 582 VCSSLDVLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSL 641
Query: 672 RDAETMLDQLSLLGKRITSSLVNEL--------------VGVVSEEKLLELLELAMSSDT 717
RDAE L+QLSLLG+RI+ LV EL VG+VS+EKL++LL+LA+S+DT
Sbjct: 642 RDAEMTLEQLSLLGQRISVPLVQELVSIVLSHHHIKQLKVGLVSDEKLVDLLDLALSADT 701
Query: 718 AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELER 767
TVK R +M++ V+P+ LMSQLA++I DI+AG+Y + L + ++E+
Sbjct: 702 VNTVKNLRTIMETSVEPLALMSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEK 761
Query: 768 LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD---LTQSGSSRRQSSRTTEE- 823
L+ ALK LSEAEKQLR+S+++ TW TA LLQL +PD L Q S+ R + +
Sbjct: 762 LRQALKTLSEAEKQLRVSNDKLTWLTAALLQL----APDQNYLLQRSSTADTGGRESSDH 817
Query: 824 --DPSS 827
DPSS
Sbjct: 818 HLDPSS 823
Score = 40.8 bits (94), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 909 RNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERF 968
+N + EIW + IE+ L++ L G+++S++ + ++ F KS AE+F
Sbjct: 842 KNRPAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLN-LGSAPTVHLMFSSPLTKSTAEKF 900
Query: 969 LSSITNSIETVLRRNVEVRI 988
S I + E VL V + I
Sbjct: 901 RSHIMQAFEAVLESPVTIEI 920
>gi|79530257|ref|NP_199384.2| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332007905|gb|AED95288.1| AAA-type ATPase family protein [Arabidopsis thaliana]
Length = 966
Score = 322 bits (824), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 196/528 (37%), Positives = 291/528 (55%), Gaps = 70/528 (13%)
Query: 319 CGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQTMYHGRRRSSSVS 373
CGIP WS+ HRG + G S +SD+ RKG + M+
Sbjct: 240 CGIPFNWSR--IHHRGKTFLDIAGRSLSCGISDSKGRKGEA----GTPMFSD-------- 285
Query: 374 NKRRMASRSAQGVLPLLANNGDGRA---GSSIGTGRSDDELSTNFGELDLEALSRLDGRR 430
+S S + LPLL ++ D S G D L N + + S R
Sbjct: 286 -----SSSSDREALPLLVDSADNEEWVHDYSGELGIFADNLLKNGKDSVIGKKSSRKNTR 340
Query: 431 WSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRG 490
W +S +QKY P F +L+GQN+VVQ+L N I++
Sbjct: 341 WH--------------------------QSFTQKYAPRTFRDLLGQNLVVQALSNAIAKR 374
Query: 491 RIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDG 550
R+ +Y+F GP GTGKTS A++F+ ALNC +T+Q+KPCG C C + GK+R E+
Sbjct: 375 RVGLLYVFHGPNGTGKTSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGP 434
Query: 551 TNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFI 610
K D + K + + V + D+C + + W K ++ P+RVVF+
Sbjct: 435 V--KSFDFENLLDK---TNIRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFV 489
Query: 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670
+ + +D +P I SRCQK+ F K+KD DI+ L+ I+++E ++++ DAL L+A +DGS
Sbjct: 490 LVCSSLDVLPHIIVSRCQKFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGS 549
Query: 671 LRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDS 730
LRDAE L+QLSLLG RI+ LV E+VG++S+EKL++LL+LA+S+DT TVK R +M++
Sbjct: 550 LRDAEMTLEQLSLLGTRISVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMET 609
Query: 731 GVDPMVLMSQLASLIMDIIAGTYTIGG----------RSLTEAELERLKHALKLLSEAEK 780
G++P+ LMSQLA++I DI+AG+Y + L++ ++E+LK ALK LSE+EK
Sbjct: 610 GLEPLALMSQLATVITDILAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEK 669
Query: 781 QLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSSRT--TEEDPS 826
QLR+S+++ TW TA LLQL L S S+ + T T+ DPS
Sbjct: 670 QLRVSNDKLTWLTAALLQLAPDKQYLLPHSSSADASFNHTPLTDSDPS 717
>gi|413951159|gb|AFW83808.1| hypothetical protein ZEAMMB73_506142, partial [Zea mays]
Length = 1039
Score = 320 bits (819), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 206/517 (39%), Positives = 303/517 (58%), Gaps = 44/517 (8%)
Query: 307 MDDHLDLPGRQGCGIPCYWSKRTPKHRG-----VCGSCCSPSLSDTLRRKGSSILCGSQT 361
+ HL R CGIP WS+ HRG + G S LSD+ G G+ +
Sbjct: 188 LQQHLPQDLRNVCGIPWNWSRL--HHRGKSIIDMAGRSLSCGLSDSRSAAGRKSEAGAAS 245
Query: 362 MYH---GRRRSSSVSNKRRMASRSAQGVLPLLANNGDGRAGSSIG--TGRSDDEL---ST 413
H R + S + ++ S LPLL A + IG +G EL S
Sbjct: 246 GGHVNASRPLFPAKSERLASSTSSDSDALPLLVGAATSGARNHIGAISGSYSGELGIFSN 305
Query: 414 NFGELDLEALSRLDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDEL 473
++D + LS + + S SQ G G RSL+QK+ P F ++
Sbjct: 306 QTSQMDSDLLS--ESQSGQKSQASQHG------RGRH--------RSLTQKFAPKTFKDV 349
Query: 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533
+GQ++VVQ+L N I R +I VY+F GP GTGKTS A++F+ ALNC++++ +PC C
Sbjct: 350 VGQSLVVQALSNAILRRKIGLVYVFYGPHGTGKTSCARVFAKALNCLSSEHPRPCDSCTV 409
Query: 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW 593
C GKSR+ ME+ +D + +L ++ L A ++VF+ D+C LP+ TW
Sbjct: 410 CIAHNLGKSRSLMEIGPVGNIDIDGIVDVLDNVM--LSPAPSHYRVFIFDDCDTLPADTW 467
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL 653
A K ++ P+RVVFI ++ +++ +P I SRCQK+ F K ++ DIV L+ I E+L
Sbjct: 468 SAISKVVDRAPRRVVFILVSPNLE-LPHIILSRCQKFFFPKHRESDIVNTLQWICTSESL 526
Query: 654 NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAM 713
+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ +LV ELVG+VS++KL++LL+LA+
Sbjct: 527 DVDKDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLTLVQELVGLVSDDKLVDLLDLAL 586
Query: 714 SSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR----------SLTEA 763
S+DT +TVK R++ ++GV+P+ LMSQLA++I DI+AG+Y +L++
Sbjct: 587 SADTVKTVKTLRDITETGVEPLALMSQLATIITDILAGSYAFNRERPKRKFFKRPTLSKE 646
Query: 764 ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
++ +L+ ALK+LSE EKQLR+SS++ TW TA LLQL
Sbjct: 647 DMGKLRQALKILSETEKQLRVSSDKTTWLTAALLQLA 683
>gi|218197144|gb|EEC79571.1| hypothetical protein OsI_20723 [Oryza sativa Indica Group]
Length = 1079
Score = 320 bits (819), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 183/402 (45%), Positives = 258/402 (64%), Gaps = 15/402 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL+QKY P F ++IGQ++VVQ+L N I + +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 354 QSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALN 413
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ +E+ LD + IL ++ L + +
Sbjct: 414 CHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVM--LSPVPTQHR 471
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF++D+C+ LP TW K +E P+RVVFI I+ ++D +P I SRCQK+ F K+K+
Sbjct: 472 VFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKEC 530
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ IS E L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG
Sbjct: 531 DIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVG 590
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS++KL++LL+LA+S+DT TVK R++ ++GV+P+ LMSQLA++I DI+AGTY
Sbjct: 591 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQE 650
Query: 759 ----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L
Sbjct: 651 RVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLP 710
Query: 809 QSGSSR--RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNA 848
S +S Q T E S +GP +P+NA
Sbjct: 711 SSSTSASFNQGLLTCPEGDVGRSTAIDHTNIYAGPHGLPRNA 752
>gi|222632318|gb|EEE64450.1| hypothetical protein OsJ_19296 [Oryza sativa Japonica Group]
Length = 1012
Score = 319 bits (817), Expect = 8e-84, Method: Compositional matrix adjust.
Identities = 183/402 (45%), Positives = 258/402 (64%), Gaps = 15/402 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL+QKY P F ++IGQ++VVQ+L N I + +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 331 QSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALN 390
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ +E+ LD + IL ++ L + +
Sbjct: 391 CHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVM--LSPVPTQHR 448
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF++D+C+ LP TW K +E P+RVVFI I+ ++D +P I SRCQK+ F K+K+
Sbjct: 449 VFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKEC 507
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ IS E L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG
Sbjct: 508 DIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVG 567
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS++KL++LL+LA+S+DT TVK R++ ++GV+P+ LMSQLA++I DI+AGTY
Sbjct: 568 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQE 627
Query: 759 ----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L
Sbjct: 628 RVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLP 687
Query: 809 QSGSSR--RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNA 848
S +S Q T E S +GP +P+NA
Sbjct: 688 SSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLPRNA 729
>gi|115465047|ref|NP_001056123.1| Os05g0529600 [Oryza sativa Japonica Group]
gi|45642717|gb|AAS72345.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|52353403|gb|AAU43971.1| putative DNA polymerase III gamma chain [Oryza sativa Japonica
Group]
gi|113579674|dbj|BAF18037.1| Os05g0529600 [Oryza sativa Japonica Group]
Length = 1023
Score = 318 bits (816), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 183/402 (45%), Positives = 258/402 (64%), Gaps = 15/402 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL+QKY P F ++IGQ++VVQ+L N I + +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 354 QSLTQKYSPKTFKDMIGQSLVVQALSNAILKRKIGLVYVFYGPHGTGKTSCARVFAKALN 413
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ +E+ LD + IL ++ L + +
Sbjct: 414 CHSPEHPRPCDSCASCIAHNLGKSRSLVEIGPVGNIDLDSIVDILDNVM--LSPVPTQHR 471
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF++D+C+ LP TW K +E P+RVVFI I+ ++D +P I SRCQK+ F K+K+
Sbjct: 472 VFIVDDCNTLPPDTWSVISKVIERAPRRVVFILISPNLD-LPHIIVSRCQKFFFPKLKEC 530
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ IS E L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELVG
Sbjct: 531 DIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSLVQELVG 590
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS++KL++LL+LA+S+DT TVK R++ ++GV+P+ LMSQLA++I DI+AGTY
Sbjct: 591 LVSDDKLVDLLDLALSADTVNTVKTLRDITETGVEPLALMSQLATIITDILAGTYAFTQE 650
Query: 759 ----------SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
+L++ ++E+L+ ALK LSEAEKQLR+S+++ TW TA LLQL L
Sbjct: 651 RVRRKFFKCPTLSKDDMEKLRQALKTLSEAEKQLRVSNDKMTWLTAALLQLAPDKQYVLP 710
Query: 809 QSGSSR--RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNA 848
S +S Q T E S +GP +P+NA
Sbjct: 711 SSSTSASFNQGLLTCPEGDIGRSTAIDHTNIYAGPHGLPRNA 752
>gi|62733881|gb|AAX95990.1| expressed protein [Oryza sativa Japonica Group]
Length = 551
Score = 307 bits (787), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 221/567 (38%), Positives = 314/567 (55%), Gaps = 81/567 (14%)
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-- 754
VGVVSEEKLL+LLE+AMS+DTAETVKR+RELMDSGVDPM LMSQLA LIMDIIAGTY
Sbjct: 1 VGVVSEEKLLDLLEIAMSADTAETVKRSRELMDSGVDPMALMSQLAGLIMDIIAGTYRLA 60
Query: 755 --------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
IGGR++T+AELERL+ ALK+LS+AEKQ+RLSSER TWFTA LLQLGS H+ +
Sbjct: 61 DPTCGGEGIGGRNITDAELERLQQALKILSDAEKQIRLSSERSTWFTAALLQLGSGHNSE 120
Query: 807 LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLG 866
+ QS SS +QS++ T E RE+ + + P + + + LR
Sbjct: 121 MIQSRSSSKQSAKATSEIVMDAVRESSASRTTAHPLFTLRGSRKTLDLRTA--------- 171
Query: 867 EVLSRIDGHNSYSKPSHSRLKDAGALAVSQ----NGNIVGNTIITCRNSEKLGEIWAQCI 922
GH+S G ++VS N N+ CR+ +++ + AQ
Sbjct: 172 ------SGHSS----------PQGVVSVSSRMRANDNLKHG---ECRSVDRVLQDSAQ-- 210
Query: 923 ERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRR 982
R +S L+ + + + E IA++AF DIKSRA+RF SSI NS+ETVLR
Sbjct: 211 -RSNSSELRPMTNDGVQTFN----EGYYIAFIAFEGSDIKSRAQRFTSSIRNSMETVLRC 265
Query: 983 NVEVRIILLPDGEASIHHGISNELPKGLKKTETTAAIEREGKALCSNANDNYSDSDSQQI 1042
NVEVRI L+P+ L GLK+ E + CS +D +
Sbjct: 266 NVEVRIGLMPE-----------LLAGGLKREEDLDERDEFDALSCSTNSDRLKGIRNPSR 314
Query: 1043 PVNVARKVSRGSFNELEGKFKGEDDHSNCSPLFADGNSEISSTKGRRQEIPMQRIESI-I 1101
+N + ++ + + +C+ +GN+ + T+G+ E+ +++ +++ +
Sbjct: 315 NLNYSEEIEK-KLEKFSCASAASGGLQSCT---TEGNTGMHRTRGK--EVSVEQAKAVTV 368
Query: 1102 REQRLETAWLQATEKGAPGSLGHLRPEKNQVLPQ---EDIYRQNHMESLLSSGLSSQQWE 1158
EQRLE+AWLQA EK APG L +RPE+NQV+P+ E +R +++ S+Q +
Sbjct: 369 EEQRLESAWLQAVEKHAPGILNQMRPERNQVVPRISGEQYHRMPETDTV----FPSRQVD 424
Query: 1159 DELNQELKILKLNEDRVLKKDENGKKGENYPILPSLLHDSSFMGNFSKENQGYESGSQAG 1218
EL+ LK L + + +NG+ Y I PSLLH ++ + N E+ E G A
Sbjct: 425 KELSNGLKSLNIGSHGL---RQNGQMENGYAISPSLLHSNNHLANCDNESVVSEPG--AP 479
Query: 1219 GCSGLF-CWNNTKPHKKGKVKGTPVRS 1244
GC GLF CW T+ K+ K K P+++
Sbjct: 480 GCHGLFPCW-KTEKSKRRKKKACPLQT 505
>gi|413921404|gb|AFW61336.1| hypothetical protein ZEAMMB73_064194 [Zea mays]
Length = 816
Score = 306 bits (785), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 167/377 (44%), Positives = 239/377 (63%), Gaps = 17/377 (4%)
Query: 439 DGLEIVALNGEEEEGVL-ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYL 497
DG EI G E E+ RSL QKY+P F EL+G ++ QSL + +G++AP+YL
Sbjct: 150 DGEEI----GRREASTFQESSRSLLQKYRPRSFSELVGHGVIAQSLSGAVLKGKLAPIYL 205
Query: 498 FQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLD 557
F GP G GKTSTA+ F+AALNC + + +PCG C EC SG S + +E+D +
Sbjct: 206 FHGPHGVGKTSTARTFAAALNCRSPGENQPCGRCDECMPIFSGSSSSVVEIDASKLDCKS 265
Query: 558 RVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDID 617
RV +L++ L AS FKV ++D+C + + W + LE P+ +F+ IT+DI+
Sbjct: 266 RVAALLRNACEVL--ASSHFKVLIVDDCQHMDKEGWYSIYNSLEGIPESTIFVMITSDIE 323
Query: 618 NVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETM 677
+P + CQ Y F KI D +I RL KI +E + E +ALDL+A A+GS+RDA M
Sbjct: 324 KLPSNSIGWCQSYRFCKIDDAEIARRLIKICTKEGMEFEAEALDLLARKANGSIRDAIQM 383
Query: 678 LDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVL 737
LDQL+LLGKRI+ S+ +EL+G VS+++LL+LL LAMSSD A V+RAREL+ S VDP+ L
Sbjct: 384 LDQLTLLGKRISKSVTHELIGDVSDDELLDLLNLAMSSDAATIVRRARELLSSKVDPLQL 443
Query: 738 MSQLASLIMDIIAGTY---------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSER 788
++QLA+ IMDI+AG + G + + ++ +L++AL++LSE EKQL+ + +
Sbjct: 444 LAQLANHIMDILAGKHPSDSSEVRRVTGKHTSADVDVHKLRNALEILSETEKQLKTTKNQ 503
Query: 789 CTWFTATLLQLGSMHSP 805
TW TA LLQ +M P
Sbjct: 504 STWLTAALLQF-NMREP 519
Score = 47.8 bits (112), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + +E C S L+ LL GKL S+ + V +A + F ++ ++ F +
Sbjct: 573 LETIWMKALENCSSPPLQNLLLKDGKLSSLYTTQGVAVAELQFCHPEVVPTSKNFWKPLC 632
Query: 974 NSIETVLRRNVEVRIILLP 992
S++ +LR +V++RI L P
Sbjct: 633 ASLQNLLRCSVDIRINLSP 651
>gi|357139536|ref|XP_003571337.1| PREDICTED: uncharacterized protein LOC100827993 [Brachypodium
distachyon]
Length = 807
Score = 296 bits (757), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 170/373 (45%), Positives = 238/373 (63%), Gaps = 12/373 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSL QKY+P FF EL GQN V QSL + +S+G++AP+YLF GP G GKTS A+IF+A LN
Sbjct: 142 RSLLQKYRPRFFSELAGQNAVAQSLSSAVSQGKLAPIYLFHGPHGIGKTSAARIFAATLN 201
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PCG C EC SG S + +E+D + RV +L+ SA AS FK
Sbjct: 202 CHSPGGNQPCGNCDECVAIFSGISSSVVEIDASKLDCKARVAALLR--SACEVPASSNFK 259
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V ++D+C + + W + LE P +F+ IT+D+D +P + CQ Y F K+ D
Sbjct: 260 VLIVDDCQHMDKEGWYSIYSSLEGIPDSSIFVMITSDVDKLPSNSAGWCQSYRFCKVDDA 319
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+IV RL KI +E + E +AL+L+A A GS+RDA MLDQL+LLGKRI+ S+ +L+G
Sbjct: 320 EIVRRLSKICTKEGMEFEAEALELLARKASGSIRDAVQMLDQLTLLGKRISRSVTYDLIG 379
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY----- 753
VS+E+LL+LL L+MSSD A V+RAREL+ S VDP+ L++QLA+LIMDI+AG +
Sbjct: 380 DVSDEELLDLLNLSMSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGKHQSDSS 439
Query: 754 ----TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQ 809
IG + + ++ RL++AL++LSE EKQL+ + + TW TA LLQ +M P +
Sbjct: 440 EVRKVIGKNTSADVDVHRLRNALEILSETEKQLKTTKNQSTWLTAALLQF-NMREPYCLE 498
Query: 810 SGSSRRQSSRTTE 822
+ SS TE
Sbjct: 499 TLDDTAVSSMFTE 511
Score = 50.8 bits (120), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 43/79 (54%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + +E C S +L LLQ GKL S+ + V +A + F + +E F +
Sbjct: 551 LETIWMKALENCTSNSLHNLLQKDGKLSSLYTTQGVAVAELQFCHPEDVPTSETFWMPLV 610
Query: 974 NSIETVLRRNVEVRIILLP 992
S++ +L+ NV++RI L P
Sbjct: 611 GSLQNLLKCNVDIRINLSP 629
>gi|115474561|ref|NP_001060877.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|42407584|dbj|BAD10815.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|42407921|dbj|BAD09061.1| putative DNA polymerase III like protein [Oryza sativa Japonica
Group]
gi|113622846|dbj|BAF22791.1| Os08g0120200 [Oryza sativa Japonica Group]
gi|222639822|gb|EEE67954.1| hypothetical protein OsJ_25853 [Oryza sativa Japonica Group]
Length = 799
Score = 291 bits (746), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 235/359 (65%), Gaps = 12/359 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ RSL QKY+P F EL GQN+V QSL + + +G++AP+YLF GP G GKTS A+IF+A
Sbjct: 146 ESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAA 205
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
+LNC ++ +PCG+C EC SG S + +E+D + RV +L++ + +P AS
Sbjct: 206 SLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRN-ACEVP-ASS 263
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FKV ++D+C + + W + LE P +F+ IT+DID +P + CQ Y F K+
Sbjct: 264 HFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKV 323
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
+ +I RL +I E + E +AL+LIA A+GS+RDA MLDQL+LLGKRI+ S+ +
Sbjct: 324 DEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYD 383
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-- 753
L+G VS+E+LL+LL LA SSD A V+RAREL+ S VDP+ L++QLA+LIMDI+AG +
Sbjct: 384 LIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGRHQS 443
Query: 754 -------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G + E ++ +L++AL++LSE EKQL+ + + TW TA LLQ +M P
Sbjct: 444 DSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQF-NMREP 501
Score = 48.5 bits (114), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 899 NIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGD 958
N +G + + + L IW + +E C SK L LL+ GKL S+ + V +A + F
Sbjct: 540 NKIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCH 599
Query: 959 GDIKSRAERFLSSITNSIETVLRRNVEVRIILLP 992
+ E F + S++ +L+ NV++RI L P
Sbjct: 600 PEDVPTTESFWNPFVVSLQNLLKCNVDIRINLSP 633
>gi|242078039|ref|XP_002443788.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
gi|241940138|gb|EES13283.1| hypothetical protein SORBIDRAFT_07g002080 [Sorghum bicolor]
Length = 802
Score = 291 bits (745), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 163/359 (45%), Positives = 234/359 (65%), Gaps = 12/359 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ RSL QKY+P F EL+G ++ QSL + +G++AP+YLF GP G GKTS A+ F+A
Sbjct: 154 ESSRSLLQKYRPKSFSELVGHGVIAQSLSGAVLKGKLAPIYLFHGPHGVGKTSMARTFAA 213
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNC + +PCG C EC SG S + +E+D + RV +L++ + +P AS
Sbjct: 214 ALNCRSPGGNQPCGRCDECVAIFSGSSSSVVEIDASKLDCKSRVAALLRN-ACEVP-ASS 271
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FKV ++D+C + + W + LE P+ +F+ IT+DID +P + CQ Y F KI
Sbjct: 272 HFKVMIVDDCQHMDKEGWYSIYNSLEGIPESTIFVMITSDIDKLPSNSIGWCQSYRFCKI 331
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
D +I RL KI +E + E +ALDL+A A+GS+RDA MLDQL+LLGKRI+ S+ +E
Sbjct: 332 DDAEIARRLIKICTKEGMEFEAEALDLLARKANGSIRDAIQMLDQLTLLGKRISKSVTHE 391
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-- 753
L+G VS+E+LL+LL LAMSSD A V+RAREL+ S VDP+ L++QLA+LIMDI+AG +
Sbjct: 392 LIGDVSDEELLDLLNLAMSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGKHPS 451
Query: 754 -------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G + + ++ +L++AL++LSE EKQL+ + + TW TA LLQ +M P
Sbjct: 452 DSSEVRRVNGKHTSADVDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQF-NMREP 509
Score = 52.4 bits (124), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 914 LGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSIT 973
L IW + +E C S L+ LL+ GKL S+ + V +A + F ++ +E F +
Sbjct: 563 LETIWMKALENCSSPPLQNLLRKDGKLSSLYTTQGVAVAELQFCHPEVVPTSESFWKPLC 622
Query: 974 NSIETVLRRNVEVRIILLP 992
S++ +LR NV++RI L P
Sbjct: 623 ASLQNLLRCNVDIRINLSP 641
>gi|218200402|gb|EEC82829.1| hypothetical protein OsI_27632 [Oryza sativa Indica Group]
Length = 811
Score = 291 bits (745), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/359 (45%), Positives = 235/359 (65%), Gaps = 12/359 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ RSL QKY+P F EL GQN+V QSL + + +G++AP+YLF GP G GKTS A+IF+A
Sbjct: 158 ESARSLLQKYRPKAFSELAGQNVVAQSLSSAVLKGKLAPIYLFHGPHGIGKTSAARIFAA 217
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
+LNC ++ +PCG+C EC SG S + +E+D + RV +L++ + +P AS
Sbjct: 218 SLNCHSSGGNQPCGHCEECMAIFSGNSSSVIEIDASKLDCKSRVAALLRN-ACEVP-ASS 275
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FKV ++D+C + + W + LE P +F+ IT+DID +P + CQ Y F K+
Sbjct: 276 HFKVLIVDDCQHMDKEGWYSVYSSLEGIPDSSIFVMITSDIDKLPSNSVGWCQSYRFCKV 335
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
+ +I RL +I E + E +AL+LIA A+GS+RDA MLDQL+LLGKRI+ S+ +
Sbjct: 336 DEAEIALRLSRICINEGMEFEAEALELIARKANGSIRDAVQMLDQLTLLGKRISKSVTYD 395
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY-- 753
L+G VS+E+LL+LL LA SSD A V+RAREL+ S VDP+ L++QLA+LIMDI+AG +
Sbjct: 396 LIGDVSDEELLDLLNLAFSSDAATIVRRARELLSSKVDPLQLLAQLANLIMDILAGRHQS 455
Query: 754 -------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G + E ++ +L++AL++LSE EKQL+ + + TW TA LLQ +M P
Sbjct: 456 DSQEVRKVTGKHTSAEIDVHKLRNALEILSETEKQLKTTKNQSTWLTAALLQF-NMREP 513
Score = 48.5 bits (114), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 48/94 (51%)
Query: 899 NIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGD 958
N +G + + + L IW + +E C SK L LL+ GKL S+ + V +A + F
Sbjct: 552 NKIGCLDMNLGDPDVLETIWIKALENCTSKPLHSLLRKDGKLSSLYTTQGVAVAELQFCH 611
Query: 959 GDIKSRAERFLSSITNSIETVLRRNVEVRIILLP 992
+ E F + S++ +L+ NV++RI L P
Sbjct: 612 PEDVPTTESFWNPFVVSLQNLLKCNVDIRINLSP 645
>gi|224102151|ref|XP_002334208.1| predicted protein [Populus trichocarpa]
gi|222870040|gb|EEF07171.1| predicted protein [Populus trichocarpa]
Length = 180
Score = 286 bits (733), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 148/163 (90%), Positives = 158/163 (96%)
Query: 593 WLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEEN 652
WLAFLKFLEEPPQRVVFIF+TTD DNVPR++QSRCQKYLFNKIKDGDIVARLRKIS EEN
Sbjct: 2 WLAFLKFLEEPPQRVVFIFVTTDPDNVPRTVQSRCQKYLFNKIKDGDIVARLRKISKEEN 61
Query: 653 LNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELA 712
L+VE ALDLI+LNADGSLRDAETMLDQLSLLGK+IT+SLVNELVGVVS+EKLLELLELA
Sbjct: 62 LDVELGALDLISLNADGSLRDAETMLDQLSLLGKKITTSLVNELVGVVSDEKLLELLELA 121
Query: 713 MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
MSSDTAETVKRAR+LMDSGVDPMVLMSQLASLIMDIIAGTY +
Sbjct: 122 MSSDTAETVKRARDLMDSGVDPMVLMSQLASLIMDIIAGTYNV 164
>gi|334118530|ref|ZP_08492619.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
gi|333459537|gb|EGK88150.1| DNA polymerase III, subunits gamma and tau [Microcoleus vaginatus
FGP-2]
Length = 685
Score = 265 bits (677), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 166/554 (29%), Positives = 272/554 (49%), Gaps = 60/554 (10%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + Q+L + I + RIAP YLF GPRGTGKTS+A+IF+ +LNC+
Sbjct: 6 LHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSLNCI 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+TD PCG C C + G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 STDAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIER--AQFSPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDE H+L ++ + A LK LEEPP RVVF+ TTD V +I SRCQK+ F +I
Sbjct: 124 VYVIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++A L KI+ EN+N+ DA+ ++A A G LRDAE++LDQLSL +T V +LVG
Sbjct: 184 AMIAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
V E L++LL+ + + + R LMD G +P++++ LAS D++
Sbjct: 244 AVPENDLMDLLQAIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKRS 303
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+ T+ G + E+E + + K L E Q++ +++ W TLL L
Sbjct: 304 DLVALTSATWEKLGDFARKWEVELILASQKHLQTHEVQIKNTTQPRLWLEVTLLGL---- 359
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
S+ T++ P++ + + ++ PQ P+
Sbjct: 360 -----------LPSAIRTQQQPTAEPAKNIAPSQIHPPQ-------------PPLAKGGS 395
Query: 864 HLGEV----LSRIDGHNSYSKPSHSRLKDAGALAV-----SQNGNIVGNTIITCRNSEKL 914
+ + +S H S+P +R + + S N + + L
Sbjct: 396 QISNIEQSSVSNSQNHPPQSQPVANRTESPPPAPITAPVPSAETNQTNYSQANSADEIDL 455
Query: 915 GEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITN 974
+W Q +ER + LL+ HG+L+ + A+V + + + +++I
Sbjct: 456 NRVWEQVLERVRPHGTQSLLRQHGQLVIFNNN----TAHVKISSQPLLNMVKDKVANIEE 511
Query: 975 SIETVLRRNVEVRI 988
+ + R V V++
Sbjct: 512 AFLQIFNRRVTVKV 525
>gi|443662745|ref|ZP_21133015.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
gi|159027138|emb|CAO86769.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443332037|gb|ELS46667.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
DIANCHI905]
Length = 654
Score = 263 bits (672), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 175/548 (31%), Positives = 277/548 (50%), Gaps = 78/548 (14%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL++ + + +++ R LM+ G +P++++ LA +
Sbjct: 244 AVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 747 DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
+++A T TEA LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQELCTEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + + SR Q T+ E P+ + +P + EP+
Sbjct: 364 QVIPLVATAAPSRPQ---TSAERPT-------------------EMITAPVPVNEPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNT-IITCRNSEKLGEIWAQ 920
KP A+ S V T + T + + +IW Q
Sbjct: 399 ------------------KP---------AVITSTTSVAVPKTEVKTVTSDDNHEQIWQQ 431
Query: 921 CIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVL 980
+E T + LL+ HG L S SE AYV+ + A L++I ++ E V
Sbjct: 432 VLEVMEPPTTRTLLRQHGSLFSRSESS----AYVSISSEQLLKMARLRLTNIESAFEAVF 487
Query: 981 RRNVEVRI 988
+R ++V +
Sbjct: 488 QRRIKVHL 495
>gi|428313466|ref|YP_007124443.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428255078|gb|AFZ21037.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 789
Score = 263 bits (671), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 150/394 (38%), Positives = 223/394 (56%), Gaps = 29/394 (7%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
L + L KY+P F +L+GQ + +L N I RIAP YLF GPRGTGKTS+A+I +
Sbjct: 24 LVSYEPLHHKYRPQTFADLVGQEAIATTLTNAILSERIAPAYLFTGPRGTGKTSSARILA 83
Query: 515 AALNCVATDQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+LNC+ DQ PCGYC C SG + + +E+D + G+D +R I++ A
Sbjct: 84 KSLNCLKQDQPTESPCGYCDVCKSIASGAALDVIEIDAASNTGVDNIREIIER--AQFAP 141
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R+KV+V+DECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F
Sbjct: 142 VQCRYKVYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDF 201
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL 692
+I +V LR IS++E +++ P+AL L+A A G LRDAE++LDQLSLL +++
Sbjct: 202 RRIPLDAMVGHLRHISSQEQIDITPEALTLVAQVAQGGLRDAESLLDQLSLLPEKVAVEH 261
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAG 751
V +LVG V E L+ L + A+SSD +E V R LMD G +P++++ LA D++
Sbjct: 262 VWDLVGAVPERDLMALTK-ALSSDNSEAVLDHCRRLMDKGREPLIVLQNLAGFYRDLLIA 320
Query: 752 TYTIGGR----SLTEAELERLKHALK------------LLSEAEKQLRLSSERCTWFTAT 795
T R ++T E+L+ K L +E Q++ +++ W T
Sbjct: 321 K-TAPNRNDLVAVTPPTWEQLREFAKSLDISTILQGQQHLKNSEAQIKNTTQPRLWLEVT 379
Query: 796 LLQL------GSMHSPDLTQSGSSRRQSSRTTEE 823
LL L + SP + Q+ + RQ +T+ E
Sbjct: 380 LLGLLKSANPTPVASPPVLQTPAMSRQEPQTSRE 413
>gi|425437010|ref|ZP_18817439.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
gi|389678112|emb|CCH92995.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9432]
Length = 654
Score = 262 bits (670), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 174/547 (31%), Positives = 280/547 (51%), Gaps = 76/547 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C+ +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCHAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL++ S+ + +++ R LM+ G +P++++ LA +
Sbjct: 244 AVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 747 DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
+++A T EA LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQELCAEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + SR Q T+ E P P+ +PA + EP+
Sbjct: 364 QVIPLVATVAPSRPQ---TSAERP-------------------PEVITAPAPVNEPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
KP + ++AV + T+ + N E +IW Q
Sbjct: 399 ------------------KP--PVITPTTSVAVPKTE---VKTVTSDDNHE---QIWQQV 432
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+E T + LL+ HG L ++ E AY++ + A L++I ++ E V +
Sbjct: 433 LEVMEPPTTRTLLRQHGSLFNMEESS----AYLSISSEQLLKMARLRLTNIESAFEAVFQ 488
Query: 982 RNVEVRI 988
R ++V +
Sbjct: 489 RRIKVHL 495
>gi|425455862|ref|ZP_18835573.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
gi|389803161|emb|CCI17876.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
9807]
Length = 654
Score = 261 bits (668), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 172/547 (31%), Positives = 279/547 (51%), Gaps = 76/547 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVVHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL++ S+ + +++ R LM+ G +P++++ LA +
Sbjct: 244 AVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 747 DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
+++A T TEA LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQDLCTEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + SR Q T+ E P P+ +PA + EP+
Sbjct: 364 QVIPLVATVAPSRPQ---TSAERP-------------------PEMITAPAPVNEPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
KP + + ++AV + + T + + +IW Q
Sbjct: 399 ------------------KP--AVITPTTSVAVPKTE------VKTVASDDNHEQIWQQV 432
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+E T + LL+ HG L ++ E AY++ + A L++I ++ E V +
Sbjct: 433 LEVMEPPTTRTLLRQHGSLFNMEESS----AYLSISSEQLLKMARLRLTNIESAFEAVFQ 488
Query: 982 RNVEVRI 988
R ++V +
Sbjct: 489 RRIKVHL 495
>gi|425450409|ref|ZP_18830237.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
gi|389768796|emb|CCI06200.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa PCC
7941]
Length = 654
Score = 261 bits (667), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/547 (31%), Positives = 279/547 (51%), Gaps = 76/547 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
V E LL LL++ S+ + +++ R LM+ G +P++++ LA ++++
Sbjct: 244 AVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
A T+ + LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + SR Q T+ E P P+ +PA + EP+
Sbjct: 364 QVIPLVATVAPSRPQ---TSAERP-------------------PEVITAPAPVNEPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
KP + ++AV + T+ + N E +IW Q
Sbjct: 399 ------------------KP--PVITPTTSVAVPKTE---VKTVTSDDNHE---QIWQQV 432
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+E T + LL+ HG L ++ E AY++ + A L++I ++ E V +
Sbjct: 433 LEVMEPPTTRTLLRQHGSLFNMEESS----AYLSISSEQLLKMARLRLTNIESAFEAVFQ 488
Query: 982 RNVEVRI 988
R ++V +
Sbjct: 489 RRIKVHL 495
>gi|440756560|ref|ZP_20935760.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
gi|440172589|gb|ELP52073.1| DNA polymerase III, subunits gamma and tau [Microcystis aeruginosa
TAIHU98]
Length = 654
Score = 261 bits (666), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/547 (31%), Positives = 279/547 (51%), Gaps = 76/547 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
V E LL LL++ S+ + +++ R LM+ G +P++++ LA ++++
Sbjct: 244 AVPERDLLTLLKVIHSNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
A T+ + LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQDLCKEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + SR Q T+ E P P+ +PA + EP+
Sbjct: 364 QVIPLVATVAPSRPQ---TSAERP-------------------PEVITAPAPVNEPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
KP + ++AV + T+ + N E +IW Q
Sbjct: 399 ------------------KP--PVITPTTSVAVPKTE---VKTVTSDDNHE---QIWQQV 432
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+E T + LL+ HG L ++ E AY++ + A L++I ++ E V +
Sbjct: 433 LEVMEPPTTRTLLRQHGSLFNMEESS----AYLSISSEQLLKMARLRLTNIESAFEAVFQ 488
Query: 982 RNVEVRI 988
R ++V +
Sbjct: 489 RRIKVHL 495
>gi|302762260|ref|XP_002964552.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
gi|300168281|gb|EFJ34885.1| hypothetical protein SELMODRAFT_2945 [Selaginella moellendorffii]
Length = 220
Score = 259 bits (662), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 126/222 (56%), Positives = 160/222 (72%), Gaps = 2/222 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SLSQKY+P F +++GQN++VQ+L N ++RGRIAPVYLF GPRGTGKTS AKI +AALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V+ + T+PCG CREC GKS + EVD + ++ +L G PS S R+KV
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVDVASHDSTSLMKKLLMDAVVG-PS-SGRYKV 118
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDECH L ++ W FLK LEEPP+ VFI TTD + +P +RCQK+ F KIKD D
Sbjct: 119 FIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSD 178
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL 681
+V+RL+ ++A+ENL VE DALDLIA + GSLRDAET LDQL
Sbjct: 179 VVSRLQALAAKENLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|166368134|ref|YP_001660407.1| DNA polymerase III subunit gamma/tau [Microcystis aeruginosa
NIES-843]
gi|166090507|dbj|BAG05215.1| DNA polymerase III gamma/tau subunit [Microcystis aeruginosa
NIES-843]
Length = 654
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 170/547 (31%), Positives = 279/547 (51%), Gaps = 76/547 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQSAIATTLSNALISERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D P CG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 66 SSDHPTPIPCGKCSVCQAIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+KI+ E +++ +AL L+A A+G LRDAE++LDQLSLL IT+ V +LVG
Sbjct: 184 AMVAHLQKIAQIEAIDINLEALTLVAQIANGGLRDAESLLDQLSLLAGTITAERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL++ + + +++ R LM+ G +P++++ LA +
Sbjct: 244 AVPERDLLTLLKVIHGNIPDQVIEQCRHLMNRGKEPLIVLQNLAGFYLNLLLAKTAPNRP 303
Query: 747 DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GS 801
+++A T TEA LE + +LL ++E QL+ +++ W TLL L +
Sbjct: 304 EMVAVTAPTWQELCTEARTWSLEEILRGQQLLKDSETQLKNTTQPRLWLEVTLLGLLPQA 363
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
P + + SR Q+S E P+ +PA + +P+
Sbjct: 364 QVIPLVATAVPSRPQTSV---ERPTEV-------------------ITAPAPVNQPI--- 398
Query: 862 SRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
KP + + ++AV + + T + + +IW +
Sbjct: 399 ------------------KP--AVITPTTSVAVPKTE------VKTVASDDNHEQIWQRV 432
Query: 922 IERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLR 981
+E T + LL+ HG L ++ E AY++ + A L++I ++ E V R
Sbjct: 433 LEVMEPPTTRTLLRQHGSLFNMEESS----AYLSISSEQLLKMARLRLTNIESAFEAVFR 488
Query: 982 RNVEVRI 988
R ++V +
Sbjct: 489 RRIKVHL 495
>gi|284928754|ref|YP_003421276.1| DNA polymerase III subunit gamma/tau [cyanobacterium UCYN-A]
gi|284809213|gb|ADB94918.1| DNA polymerase III, subunit gamma/tau [cyanobacterium UCYN-A]
Length = 726
Score = 258 bits (658), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 212/356 (59%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L QKY+P FD L+GQ +V +L N I RI+ YLF GPRGTGKTSTA+IF+ ++NC+
Sbjct: 7 LYQKYRPQTFDGLVGQKSIVLTLSNAIRSQRISHAYLFTGPRGTGKTSTARIFAKSINCL 66
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A+D PCG C C G S + +E+D + G+D +R I++ A R+K
Sbjct: 67 ASDAPSISPCGNCEACQTINKGSSLDVIEIDAASNTGVDNIREIIEQ--AKFAPMQLRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++++DECH+L + + A LK LEEPP+ V+FI TTD V +I SRCQ++ + +I
Sbjct: 125 IYIVDECHMLSTAAFNALLKILEEPPKHVIFILATTDPQRVLPTIISRCQRFDYRRIAIE 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+IV L KI+ EEN+N+E DAL+L+A ++G LRDAE++LDQLSL +I S VN+LVG
Sbjct: 185 EIVQHLGKIAKEENINIEIDALNLVAKISNGGLRDAESLLDQLSLFTGKINSEKVNDLVG 244
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
++SE LL LL+ S+++ ++ +L++ G +P+ ++ +A+ ++++ +
Sbjct: 245 LISERDLLSLLQAIRSNNSKLIIEFCGQLINKGKEPLTILQNIANFHLNLLISKVSPQCP 304
Query: 759 SLT------------EAELERLKHALK---LLSEAEKQLRLSSERCTWFTATLLQL 799
LT EAE + LK L +E QL+ +++ W LL L
Sbjct: 305 ELTMISKDIWKELCIEAEFWKTDRILKNQQKLRNSEIQLKSTTQPYLWIEIILLDL 360
>gi|302822922|ref|XP_002993116.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
gi|300139007|gb|EFJ05756.1| hypothetical protein SELMODRAFT_2943 [Selaginella moellendorffii]
Length = 220
Score = 257 bits (657), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 125/222 (56%), Positives = 160/222 (72%), Gaps = 2/222 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SLSQKY+P F +++GQN++VQ+L N ++RGRIAPVYLF GPRGTGKTS AKI +AALNC
Sbjct: 1 SLSQKYRPKTFRDIVGQNMLVQALGNAVTRGRIAPVYLFHGPRGTGKTSAAKILAAALNC 60
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V+ + T+PCG CREC GKS + EVD + ++ +L G PS S R+KV
Sbjct: 61 VSVEDTRPCGVCRECLLLCLGKSGDVKEVDVASHDSTSLMKKLLMDAVVG-PS-SGRYKV 118
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDECH L ++ W FLK LEEPP+ VFI TTD + +P +RCQK+ F KIKD D
Sbjct: 119 FIIDECHTLTAEGWNVFLKCLEEPPEHAVFILTTTDTEQLPHPASTRCQKFHFPKIKDSD 178
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL 681
+V+RL+ ++A+E+L VE DALDLIA + GSLRDAET LDQL
Sbjct: 179 VVSRLQALAAKESLEVEKDALDLIAARSGGSLRDAETTLDQL 220
>gi|300867457|ref|ZP_07112111.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
gi|300334572|emb|CBN57279.1| DNA polymerase III, subunits gamma and tau [Oscillatoria sp. PCC
6506]
Length = 664
Score = 257 bits (656), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/359 (40%), Positives = 212/359 (59%), Gaps = 25/359 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + Q+L N I + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIAQTLSNAIRQDRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 A--TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A PCG C C + G++ + +E+D + G+D +R +++ A R+K
Sbjct: 66 AGNVPTATPCGKCDVCQGIVEGRTLDVIEIDAASNTGVDSIRDLIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSVSAFNSLLKTLEEPPDRVVFVLATTDAQRVLPTIISRCQRFDFRRIPVV 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ LR+I+ +EN+N+ PDA+ ++A A G LRDAE++LDQLSLL +T V +LVG
Sbjct: 184 AMTNHLREIAQKENINIAPDAVQMVAQIAQGGLRDAESLLDQLSLLAGEVTVEKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKR-ARELMDSGVDPMVLMSQLASLIMD-IIAGT---- 752
V E L+ LLE A++SDT ETV R LMD G +P++++ LA D +IA T
Sbjct: 244 AVPENDLMALLE-AIASDTTETVIDCVRHLMDRGREPLLVLQNLAGFYRDFLIAKTAPKR 302
Query: 753 YTIGGRSLTEAELERL------------KHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
Y + +LT+ E+L + K L +E Q++ +++ W TLL L
Sbjct: 303 YNL--VALTQQTWEKLCDFSKGWDVEMILASQKHLQSSEVQIKNTTQPRLWLEMTLLGL 359
>gi|443328498|ref|ZP_21057095.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
gi|442791952|gb|ELS01442.1| DNA polymerase III, subunit gamma/tau [Xenococcus sp. PCC 7305]
Length = 763
Score = 256 bits (654), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 143/373 (38%), Positives = 213/373 (57%), Gaps = 25/373 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +LVN I + +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFGDLVGQEAIANTLVNAIEQEKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A + PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 66 AVPKPTATPCGQCAVCQAIAVGTALDVIEIDAASNTGVDNIREIIER--AKFAPVQSRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP +VVFI TTD V +I SRCQ++ + +I G
Sbjct: 124 VYAIDECHMLSTAAFNALLKTLEEPPPQVVFILATTDPQRVLSTIISRCQRFDYRRIPLG 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++ L I+A E + + +A+ L+A A+G LRDAE++LDQLSL IT V +LVG
Sbjct: 184 EMTRHLEYIAATEKIAIAKEAITLVAQIANGGLRDAESLLDQLSLFPDTITIDQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E+ LL LL+ S + +++ R L+D G +P+V++ LAS +
Sbjct: 244 AVPEQDLLGLLKSIRSKNLEHILEKCRNLLDRGREPLVVLQNLASFYLNLVIAKTSPQRN 303
Query: 747 DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
D++A T T TEA E+ + + L +AE QL+ +++ W TLL L S
Sbjct: 304 DLVAVTETCWQELQTEAAHWEIALILQGQQQLKDAEVQLKNTTQPRLWLEVTLLGLVS-- 361
Query: 804 SPDLTQSGSSRRQ 816
TQ G +R++
Sbjct: 362 ----TQEGGTRKE 370
>gi|434397165|ref|YP_007131169.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
gi|428268262|gb|AFZ34203.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
Length = 780
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 169/514 (32%), Positives = 265/514 (51%), Gaps = 43/514 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + ++L+N I++ +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQRFADLVGQSAIARTLINAINQKKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D +PCG C C +G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 SSDDPTDQPCGKCEVCRAIATGTALDVIEIDAASNTGVDNIREVIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP+ V+F+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPRNVIFVLATTDPQRVLSTIISRCQRFDYRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++VA L I+ EE +++ DAL L+A A+G LRDAE++LDQLSLL + IT + +LVG
Sbjct: 184 EMVAHLSYIAREEAIDITEDALTLVAQIANGGLRDAESLLDQLSLLPETITVEKIWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E+ LL LL+ S+ + +++ R L+D G +P++++ LA +
Sbjct: 244 AVPEQDLLSLLQAIRESNPEQILQKCRNLLDRGREPIIVLQNLAGFYLNLLIAKTAAHRS 303
Query: 747 DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL---G 800
D++A T + + EA E+ + + L E E QL+ +++ W LL L
Sbjct: 304 DLVAVKETTWQKLIQEAKNWEINLILRGQQQLKEGEVQLKHTTQPRLWLEVILLGLLQGS 363
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVY--KRMSGPQYMPQNAVSPASLREPV 858
S P + S T S++ E VV K + +P N AS P
Sbjct: 364 STLKPSSHDNTSINDHFLPATNVVQSTSVTEKVVVDQKEQNSVTQIPANTKVLASQTPPQ 423
Query: 859 NGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIW 918
S V+S +N + S K+ V +N +E EIW
Sbjct: 424 KSTS-----VVSTTPENNHLQEKS----KEISTDVVEENQ---------INQTEDSQEIW 465
Query: 919 AQCIERCHSKTLKQLLQVHGKLLSISEVERVLIA 952
+ I+ T + LL L+ I E V IA
Sbjct: 466 FKAIQLIQPPTTQALLIQQCYLIKI-EASVVTIA 498
>gi|186684248|ref|YP_001867444.1| DNA polymerase III subunits gamma and tau [Nostoc punctiforme PCC
73102]
gi|186466700|gb|ACC82501.1| DNA polymerase III, subunits gamma and tau [Nostoc punctiforme PCC
73102]
Length = 707
Score = 254 bits (650), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 173/574 (30%), Positives = 283/574 (49%), Gaps = 73/574 (12%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIGTSKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ +PCG C C G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 KSDRPTAEPCGVCDVCQGITKGYALDVIEIDAASNTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L ++ + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSTQAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+++EN+++ P+A+ L+A + G LRDAE++LDQL LL +T V +LVG
Sbjct: 184 AMVKHLSAIASKENIHISPEAVTLVAQLSQGGLRDAESLLDQLGLLAGVVTPDRVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAG------ 751
VSE+ LL LL A++ D E V +++D G +P+ + LA+ D++
Sbjct: 244 TVSEQDLLGLLN-AIAQDKPEAVLDSTHKILDRGREPLTFLQNLAAFYRDLLIAKTAPNR 302
Query: 752 ---------TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
T+T ++ + + L +AE Q++ S++ W TLL L
Sbjct: 303 HDLVACTQQTWTALVEFAQYFDMTMILAGQEHLRKAEVQIKNSTQPRLWLEVTLLGL--- 359
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP---QN-AVSPASLREPV 858
S TT P + + V P Y P QN AVS + EP
Sbjct: 360 -------------LPSATTNIQPQAPNIAPRVIPPAVSPSYPPAVTQNHAVSSLPVAEPQ 406
Query: 859 NGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNT-------------- 904
++ L + + H + ++ + + +GA+ +N N N+
Sbjct: 407 TNHNSTLRQGSVTTNHHVAIAQ--NQPVTSSGAVEQQKNHNSAANSVSPPTPEPVAVPVP 464
Query: 905 --IITCRNSEKLGE-------IWAQCIERCHSKTLKQLLQVHGKLLSISEV-ERVLIAYV 954
I+ SE +GE +W Q + K+ +++L+ +L+ V R+ I
Sbjct: 465 SAIVEAVTSEVVGEAQYDLTQVWQQVLANLQPKSRQEMLRQMSQLIEFDGVMARIAIKQA 524
Query: 955 AFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
+ G + +L IT + + +R +++ I
Sbjct: 525 WYDKG------KSYLPMITAAFQQTFQREIQINI 552
>gi|86608779|ref|YP_477541.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86557321|gb|ABD02278.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 779
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/374 (37%), Positives = 208/374 (55%), Gaps = 17/374 (4%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L KY+P F +++GQ VVQ+L N I GR+AP YLF GPRGTGKTS+A+I + +
Sbjct: 6 NYEPLHLKYRPQRFADVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKS 65
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC PC C +C +G S + +E+D + G+D +R +++ A + R
Sbjct: 66 LNCEQGPTPDPCQACSQCRAITAGASLDVLEIDAASNTGVDNIRELIER--AQFAPVNSR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 YKVYVIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
D+VA L KI+A+E + + P+AL L+A + G LRDAE +LDQLSLL IT V +L
Sbjct: 184 LDDMVAHLGKIAAQEGIPITPEALQLVAQLSQGGLRDAERLLDQLSLLEGSITPEAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
VG + E++LL L++ ++ D + + R+L++ G +P+ L+ L +L D++
Sbjct: 244 VGGIPEQQLLALMDALLAQDVQAVLSQTRQLLERGKEPLALLQNLVALYRDLLLVKTAPQ 303
Query: 757 GRSLTEA---------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
R L +E L A L + E Q+R S + W L+ L
Sbjct: 304 QRELVAVTDSTWAALQQRAPRYSVEILLAAQSHLRQCEPQIRQSGQPQLWLEIALVDLLG 363
Query: 802 MHSPDLTQSGSSRR 815
P + S+ R
Sbjct: 364 QLRPSMVAEDSAER 377
>gi|428320532|ref|YP_007118414.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244212|gb|AFZ09998.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 693
Score = 254 bits (648), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 205/356 (57%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + Q+L + I + RIAP YLF GPRGTGKTS+A+IF+ +LNC+
Sbjct: 6 LHHKYRPQTFAELVGQEAIAQTLTSAILQERIAPAYLFTGPRGTGKTSSARIFAKSLNCI 65
Query: 521 AT--DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+T PCG C C + G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 STVAPTPTPCGKCNVCQEIARGSTLDVIEIDAASNTGVDNIRDLIER--AQFSPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDE H+L ++ + A LK LEEPP RVVF+ TTD V +I SRCQK+ F +I
Sbjct: 124 VYVIDEVHMLSTQAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQKFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++A L KI+ EN+N+ DA+ ++A A G LRDAE++LDQLSL +T V +LVG
Sbjct: 184 AMIAHLHKIAKLENINIASDAVQMVAQIAQGGLRDAESLLDQLSLFQGEVTVEKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYTI 755
V E L++LL+ + + + R LMD G +P++++ LAS D++ A
Sbjct: 244 AVPENDLMDLLQAIDTDNATALIDMTRHLMDRGREPLIVLQSLASFYRDLLIAKAAPKRS 303
Query: 756 GGRSLTEAELERL----KH--------ALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+LT A E+L +H K L E Q++ +++ W TLL L
Sbjct: 304 DLVALTSATWEKLATFARHWDAELILAGQKHLQTHEVQIKNTTQPRLWLEVTLLGL 359
>gi|443322915|ref|ZP_21051928.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
gi|442787333|gb|ELR97053.1| DNA polymerase III, subunit gamma/tau [Gloeocapsa sp. PCC 73106]
Length = 697
Score = 252 bits (644), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 209/356 (58%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNCV
Sbjct: 15 LHHKYRPQTFAELVGQEAIATTLANAITLARIAPAYLFTGPRGTGKTSSARILAKSLNCV 74
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ Q +PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 75 SGTQPTPQPCGKCEMCMAIARGSALDVIEIDAASNTGVDNIREIIER--AQFSPLKYRYK 132
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ + +I G
Sbjct: 133 VYVIDECHMLSTAAFNALLKTLEEPPPSVVFVLATTDPQKVLPTIISRCQRFDYRRISIG 192
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L KI+ EE + + +A+ L+A A+G LRDA+++LDQLSL ITS + +LVG
Sbjct: 193 AMVTHLEKIAREEKIEISTEAITLVAQLANGGLRDAQSLLDQLSLFSGEITSERIWDLVG 252
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYTI 755
E+ L++LL+ + +++ REL++ G++P++++ LAS ++++ G +
Sbjct: 253 ATPEQDLIDLLQAIATGTPVSILQKCRELLNRGLEPLIVLQNLASFYLNLLIAKTGPQQL 312
Query: 756 GGRSLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++T ++L A + L ++E Q++ +++ W ATLL L
Sbjct: 313 ELVTVTPQTWQKLLELTPQWSVAEILKAQQYLKQSEIQIKNTTQPYLWLEATLLGL 368
>gi|428769843|ref|YP_007161633.1| DNA polymerase III subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
gi|428684122|gb|AFZ53589.1| DNA polymerase III, subunits gamma and tau [Cyanobacterium aponinum
PCC 10605]
Length = 626
Score = 251 bits (642), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 150/436 (34%), Positives = 245/436 (56%), Gaps = 35/436 (8%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L KY+P F +L GQ + Q+L+N I +I P YLF GPRGTGKTS+A+I + +
Sbjct: 2 NYEPLHHKYRPQTFSQLTGQEAIAQTLINAIKNEKIVPAYLFCGPRGTGKTSSARILAKS 61
Query: 517 LNCVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC+ +D+ +PCG C C +G + + +E+D + G+D +R I++ A
Sbjct: 62 LNCIESDRPTAEPCGKCEVCKSISNGSALDVVEIDAASNTGVDNIREIIEK--AQYAPVK 119
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV+VIDECH+L + + A LK LEEP RV+F+ TTD V +I SRCQ++ + +
Sbjct: 120 CRYKVYVIDECHMLSTAAFNALLKTLEEPSPRVIFVLATTDPQRVLPTIISRCQRFDYRR 179
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
I ++V L+ I+ +EN+++ P+ L L+A A+G +RDA+T+LDQLSLL IT V
Sbjct: 180 IPLIEMVKHLQDIAIKENIDITPEGLSLVAQLANGGMRDAQTLLDQLSLLSGTITPERVW 239
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM-------- 746
+LVG VSE+ LL L+ S + E + + R+L+D G +P++++ LA+ +
Sbjct: 240 DLVGAVSEQDLLALISAIASDNPEEVIIQCRKLLDRGREPLIVLQNLANFYLTLLIAKTS 299
Query: 747 ----DIIAGTYTIGGRSLTEAELERLKHAL---KLLSEAEKQLRLSSERCTWFTATLLQ- 798
+++A T + + EA LK L K L ++E Q+R +++ W TLL
Sbjct: 300 PQKKELVAITDDTWQKLIQEAHQWDLKVILQGQKKLKDSEVQIRNTTQPRLWLEITLLSL 359
Query: 799 ------LGSMHSPDLTQSGSSR-RQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSP 851
L ++ + +Q+ ++ Q R T+E +T+ E + ++ P P++ +P
Sbjct: 360 LPSANALTTVMVNNSSQTATAPLTQEKRVTQEKRENTTVETQTSQAITPP---PEDNSTP 416
Query: 852 ASLR-----EPVNGNS 862
+ + PVN +S
Sbjct: 417 QTPQIYQPSTPVNFDS 432
>gi|22298675|ref|NP_681922.1| DNA polymerase III subunits gamma and tau [Thermosynechococcus
elongatus BP-1]
gi|22294855|dbj|BAC08684.1| DNA polymerase III gamma and tau subunits [Thermosynechococcus
elongatus BP-1]
Length = 603
Score = 251 bits (641), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/406 (35%), Positives = 223/406 (54%), Gaps = 23/406 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L + + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQRFSDLVGQGAIATTLTQALLKERIAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ + P CG C C +G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 RSSKPTPDPCGQCEVCRQVANGTSLDVIEIDAASHTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP +VVFI TTD V +I SRCQ++ F +I G
Sbjct: 124 VYVIDECHMLSVSAFNALLKTLEEPPPQVVFILATTDPQRVLPTIISRCQRFDFRRIPLG 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++VA L+ I+ +E +++EP+AL L+A + G LRDAE++LDQLSL +RIT V +L G
Sbjct: 184 EMVAHLQNIADKEQIDIEPEALTLVAQLSQGGLRDAESLLDQLSLYPERITVEQVWQLTG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E+ L +LL D ++ R+L++ G DP+ ++ LASL D++ T+ R
Sbjct: 244 AVPEQDLRQLLGAIARRDAVSVLEHTRQLLERGRDPLTILQNLASLYRDLLLAK-TVPQR 302
Query: 759 ---------------SLTEA-ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+L EA +E + HA + L E Q++ S++ W ++L L +
Sbjct: 303 RDLVALTAETWQALIALAEAWSVEEILHAQEHLRTCEGQIKQSNQPRLWLEISILGLMTE 362
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNA 848
+ T P T E V + + P +PQ++
Sbjct: 363 RVAQPPPPAVMPAARPQPTTMTPPRTEAEVAVAAKPAEP--LPQDS 406
>gi|427703526|ref|YP_007046748.1| DNA polymerase III subunits gamma and tau [Cyanobium gracile PCC
6307]
gi|427346694|gb|AFY29407.1| DNA polymerase III, subunit gamma/tau [Cyanobium gracile PCC 6307]
Length = 638
Score = 250 bits (639), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 187/287 (65%), Gaps = 4/287 (1%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
++++ L KY+P FD+L+GQ V +L + + RIAP YLF GPRGTGKTS+A+I
Sbjct: 1 MVQSYEPLHHKYRPQRFDQLVGQKAVADTLSQALLQNRIAPAYLFSGPRGTGKTSSARIL 60
Query: 514 SAALNCVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
+ +LNC+A+ +PCG C+ CND +G + + +E+D + G+D +R +++ +
Sbjct: 61 ARSLNCLASPAPTPEPCGRCQLCNDIAAGNALDVIEIDAASNTGVDNIRELIER--SRFA 118
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
R+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++
Sbjct: 119 PVQARWKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFD 178
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS 691
F +I D+V L+ I+AEE++ + P+A+ L+A + G LRDAE++LDQLSLL + I +
Sbjct: 179 FRRIPLEDLVGHLQWIAAEESIGITPEAVHLVAQRSQGGLRDAESLLDQLSLLPEPIAAD 238
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLM 738
V +L+G V E +LL+L E ++D + V+ REL+D G +P ++
Sbjct: 239 AVWDLLGAVPEVELLQLAEAMAAADPLQVVEGCRELLDRGREPAAVL 285
>gi|147765605|emb|CAN69246.1| hypothetical protein VITISV_010442 [Vitis vinifera]
Length = 1057
Score = 250 bits (639), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 171/391 (43%), Positives = 227/391 (58%), Gaps = 82/391 (20%)
Query: 426 LDGRRWSSSCRSQDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVN 485
L G++WS C + EI + E+ RSLSQK++P F+EL+GQN+V +S
Sbjct: 373 LSGQKWSWKCFNN---EITPYS--------ESPRSLSQKFRPKAFNELVGQNVVARS--- 418
Query: 486 TISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNF 545
R + + T +I +QT G+ R+
Sbjct: 419 ----------------RDSKEIDTVRI----------NQT--------------GRMRSL 438
Query: 546 MEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605
+ KH + G P +S RFKVF+IDECHLL +TW L L++ PQ
Sbjct: 439 I-----------------KH-AIGRPVSS-RFKVFIIDECHLLRGETWATVLNSLDDLPQ 479
Query: 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIAL 665
VVFI IT +D +PRS SR Q+Y F KIKD DI ++L +I EE L + ALD IA
Sbjct: 480 HVVFIMITPSLDKLPRSAVSRSQRYHFPKIKDADIASKLGRICVEECLEFDQVALDFIAA 539
Query: 666 NADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRAR 725
++GSLRDAE MLDQLSLLGKRIT S+ EL+G+VS+++LL+LL+LA+SSDT+ TV+RAR
Sbjct: 540 KSNGSLRDAEMMLDQLSLLGKRITMSMTYELIGIVSDDELLDLLDLALSSDTSNTVRRAR 599
Query: 726 ELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL---------TEAELERLKHALKLLS 776
ELM S +DPM L+SQLA+LIMDI+AG G + +E +L++L HALK+LS
Sbjct: 600 ELMRSRIDPMQLISQLANLIMDILAGKCQEGTSEVRXNFFEGHTSEVDLQKLSHALKILS 659
Query: 777 EAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807
E EKQLR S + TW T LLQL S+ S L
Sbjct: 660 ETEKQLRASKNQTTWLTVALLQLSSVESSFL 690
Score = 53.9 bits (128), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
+L +W Q E C S +LK L+ GKL S+ + + +A + F D S+AE+ I
Sbjct: 734 QLEFLWKQATEICQSSSLKNFLRKQGKLSSVIVSQGMAVAELEFQHPDYVSKAEKSWKLI 793
Query: 973 TNSIETVLRRNVEVRIILLP 992
+S++++L NVE+RI L P
Sbjct: 794 ASSLQSILGCNVEIRINLAP 813
>gi|86605279|ref|YP_474042.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
gi|86553821|gb|ABC98779.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
JA-3-3Ab]
Length = 692
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 200/354 (56%), Gaps = 17/354 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F E++GQ VVQ+L N I GR+AP YLF GPRGTGKTS+A+I + +LNC
Sbjct: 10 LHLKYRPQRFAEVVGQGAVVQTLANAIRLGRVAPAYLFCGPRGTGKTSSARILAKSLNCE 69
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C +C +G S + +E+D + G+D +R +++ A + R+KV+
Sbjct: 70 QGPTPDPCQVCSQCRAITAGSSLDVIEIDAASNTGVDNIRELIER--AQFAPVNSRYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
VIDECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I D+
Sbjct: 128 VIDECHMLSNAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIVSRCQRFDFRRIPLDDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
VA L +I+A+E + + P+AL L+A A G LRDAE +LDQLSLL IT V +LVG +
Sbjct: 188 VAHLGQIAAQEGIPIAPEALHLVAQLAQGGLRDAERLLDQLSLLEGSITPEAVWDLVGGI 247
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
E +LL+L + ++ D + + R+L++ G +P+V++ L D++ R L
Sbjct: 248 PERQLLDLTDALLAQDVQAVLAQTRQLLERGREPLVVLQSLVVFYRDLLLAKTAPQQRQL 307
Query: 761 TEA---------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+E L A L + E Q+R S + W LL L
Sbjct: 308 AAVTDPTWAALQQRAPRYSVEMLLAAQSHLRQCEPQIRQSGQPQLWLEIALLDL 361
>gi|119513249|ref|ZP_01632292.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
gi|119462090|gb|EAW43084.1| AAA ATPase, central region [Nodularia spumigena CCY9414]
Length = 650
Score = 250 bits (638), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 154/425 (36%), Positives = 232/425 (54%), Gaps = 34/425 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+DQ +PCG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 NSDQPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEK--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+V+DECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+++EN+N+ DA+ LI A G LRDAE++LDQL+L +T V +LVG
Sbjct: 184 AMVNHLSAIASKENINITSDAVTLIGQIAQGGLRDAESLLDQLALTVGEVTPDKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKR-ARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
VSE+ L+ LL A++ + AE V +R+++DSG +P++++ LA+L D++
Sbjct: 244 SVSEQDLIALLN-AIAQNRAEGVLDCSRKILDSGREPLIILQNLAALYRDLLIAQTASNR 302
Query: 758 RSL------TEAELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ L T L L L + L AE Q++ +++ W TL LG +
Sbjct: 303 QDLVTCTQQTWTALVELSQKLDMSTILQGQQHLRTAEVQIKNTTQPRLWLEVTL--LGLL 360
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQN---AVSPASLREPVN 859
S ++ +S Q T P+ Y S P P N V+P S +P N
Sbjct: 361 PSANIQTQAASIPQRVNTPAVAPN-------YYPVASAPP-QPTNHNQTVNPVSAPQPTN 412
Query: 860 GNSRH 864
N +
Sbjct: 413 HNPVY 417
>gi|298492637|ref|YP_003722814.1| DNA polymerase III subunits gamma and tau ['Nostoc azollae' 0708]
gi|298234555|gb|ADI65691.1| DNA polymerase III, subunits gamma and tau ['Nostoc azollae' 0708]
Length = 663
Score = 249 bits (637), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 176/554 (31%), Positives = 273/554 (49%), Gaps = 58/554 (10%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N IS +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAITTTLTNAISSAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ P CG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 KSDKPTPIPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPKYVVFVLATTDPQRVLPTIISRCQRFDFRRIHLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+++EN+N+ DA+ L+A + G LRDAE++LDQL+L + V +LVG
Sbjct: 184 AMVKHLGAIASKENINICLDAVTLVAQMSQGGLRDAESLLDQLALFPGEVIPDQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
VSE+ LL LL+ A++ D AE V R+++D G +P+ ++ +A+ D++
Sbjct: 244 SVSEKDLLALLD-AITQDNAEIVLDSTRQILDRGREPLTILQNVAAFYRDLLIAKTAPNR 302
Query: 758 RSL------TEAELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ L T L H L + L AE QL+ +++ W TL LG +
Sbjct: 303 QDLVACTQQTWTTLINFAHKLDITTILRGQQHLRTAEVQLKNTTQPRLWLEVTL--LGLL 360
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS 862
S ++ S Q T +S P Y A SP N NS
Sbjct: 361 PSANIQPQALSVSQVLNT---------------PAVSPPSY--PAAFSPPPAYTQTNHNS 403
Query: 863 RHLGEVLSRID-GHNS----YSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEI 917
+ + HNS S P+ + AV+ N ++T + L +I
Sbjct: 404 QISSPTPAYTQKNHNSAPQTVSSPAPEPVYTPPPPAVT-NPTAPAQEVVT-ESQYDLTQI 461
Query: 918 WAQCIERCHSKTLKQLLQVHGKLLSIS-EVERVLI--AYVAFGDGDIKSRAERFLSSITN 974
W Q + + +++L+ LL + + R+ I A+ G D L IT
Sbjct: 462 WQQVLANLQPPSRREMLRQMSNLLDFNGALARIAIKQAWYEKGKSD--------LPIITT 513
Query: 975 SIETVLRRNVEVRI 988
+ + +R+++V +
Sbjct: 514 AFQQTFQRHIQVNL 527
>gi|282901379|ref|ZP_06309304.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
gi|281193658|gb|EFA68630.1| AAA ATPase, central region protein [Cylindrospermopsis raciborskii
CS-505]
Length = 660
Score = 248 bits (633), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 169/553 (30%), Positives = 266/553 (48%), Gaps = 69/553 (12%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N IS +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAISLVKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
T P CG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 QTGHPTPTPCGVCDTCQGITKGYSLDVIEIDAASNTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSAAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L KI+ EN+ + DA+ L+A + G LRDAE++LDQL+LL ++ V +LVG
Sbjct: 184 AMVKHLSKIAYNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGEVSPEQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
VSE+ L LL+ +D+ + + R ++D G +P++++ L + D++ +
Sbjct: 244 SVSEKDLFALLQAIAQNDSEKVLDHTRNILDRGREPLIILQNLGAFYRDLLIAKTASSRQ 303
Query: 759 SLT---------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
L E ++ + H + L AE QL+ +++ W TLL + +
Sbjct: 304 DLVSCTQETWQQLVSFAAELDITFILHGQQQLRTAEVQLKSTTQPRLWLEVTLLGMLPI- 362
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
QSS PSS S + +G Y V P+ + + + +
Sbjct: 363 -----------TQSSMVA---PSSPSVHPATIQNQNGINY----NVPPSPIYKQAHQQAT 404
Query: 864 -HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCI 922
+L S + HN P HS A + S I + L +IW Q +
Sbjct: 405 PNLVSSSSSLPTHN----PQHSPNYLEQATSSSSEA-------IPPSSEHDLNQIWYQVL 453
Query: 923 -------ERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNS 975
R + + QLL+ G L I + A+ G D L I N+
Sbjct: 454 GNLQPASRREMLRQMSQLLEFDGNLAKIG----IKQAWYEKGKSD--------LGIIQNA 501
Query: 976 IETVLRRNVEVRI 988
+R++++++
Sbjct: 502 FHQTFQRHIQIQL 514
>gi|254421557|ref|ZP_05035275.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
gi|196189046|gb|EDX84010.1| DNA polymerase III, subunits gamma and tau, putative [Synechococcus
sp. PCC 7335]
Length = 745
Score = 247 bits (630), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 176/590 (29%), Positives = 289/590 (48%), Gaps = 68/590 (11%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + Q+L + + + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 5 LHHKYRPQTFSQLVGQDAIAQTLTHALEQKRIAPAYLFCGPRGTGKTSSARILAKSLNCL 64
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ +PCG C C I G + + +E+D + G+D +R +++ + R+K
Sbjct: 65 SSEVPTAQPCGQCDVCQAVIQGIALDVVEIDAASNTGVDNIRELIER--SQFAPVQCRYK 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++V+DE H+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 123 LYVLDEVHMLSTAAFNALLKTLEEPPSRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLP 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++ L ISAEE + +EP A+ L+A + G LRDAE++LDQLSL +IT V +LVG
Sbjct: 183 SMIKHLSYISAEEAIQIEPSAIQLVAQISQGGLRDAESLLDQLSLQANKITVETVWDLVG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---- 754
V E LL L+ + D+ ++R R LMD G +P++++ L D++
Sbjct: 243 AVPERDLLNLVRAIAADDSTALLERVRHLMDKGREPLIVLQSLVGFYRDLLIAKRAPKRV 302
Query: 755 --IGGRSLTEAEL----ERLKHALKLLSE-----AEKQLRLSSERCTWFTATL------- 796
+ S T AE+ ++L A L S+ AE Q++ +++ W TL
Sbjct: 303 DLVAITSPTWAEMIPFAQKLSAAALLASQQKLQSAEVQIKNTTQPRLWLEITLTGLLPSA 362
Query: 797 LQLGSMHSP---DLTQSGSSRRQSS------RTTEEDPSSTSREAVVYKRMSGPQYMPQN 847
L++ + +P T ++R S+ TT ++S + + ++ P P
Sbjct: 363 LEVMAKRTPASNAATNPATNRANSAAVDNARETTAATDITSSVKPKIAPSITPPIVKPAI 422
Query: 848 AVS-----PASLREP----VNGNSRHLGEV---LSRIDGHN-------SYSKPSHSRLKD 888
A + P S+ +P G S+ E L I G S S S + L
Sbjct: 423 ASTIQHPVPPSVDQPAQTAATGASKSPTEPPVSLPAIPGEPNEPKAELSDSSASSNNLDP 482
Query: 889 AGALAVSQN--GNIVGNTIITCRNSEK--------LGEIWAQCIERCHSKTLKQLLQVHG 938
A A +S + T + EK L ++W Q + + + L+ G
Sbjct: 483 AKAAVLSDPSAASATQPTPLKPAAPEKPIAVAFGNLSDLWKQILAVLQPRGTQMLMSQQG 542
Query: 939 KLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRI 988
LL V A V F ++ A + ++ + +TV +R +++ +
Sbjct: 543 MLLGFDGVG----AKVGFRSAPLQKAARERIPNLEAAFQTVFQRPIKISL 588
>gi|75908432|ref|YP_322728.1| AAA ATPase [Anabaena variabilis ATCC 29413]
gi|75702157|gb|ABA21833.1| AAA ATPase, central region [Anabaena variabilis ATCC 29413]
Length = 650
Score = 245 bits (626), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 205/357 (57%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ +PCG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEK--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L S + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+++EN+N+ +A+ L+A + G LRDAE++LDQL+LL +T V +LVG
Sbjct: 184 AMVKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAG------ 751
VSE+ LL LL A++ D E V R+++D G +P+ ++ LA+ D++
Sbjct: 244 SVSEQDLLVLLA-AIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKTAPNR 302
Query: 752 ---------TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
T+ S + + K L EAE Q++ +++ W TLL L
Sbjct: 303 HNLVACTQQTWNALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGL 359
>gi|434393523|ref|YP_007128470.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428265364|gb|AFZ31310.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 648
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 162/504 (32%), Positives = 256/504 (50%), Gaps = 46/504 (9%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L+N + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 5 LHHKYRPQSFAELVGQEAIATTLINAVRTSRIAPAYLFTGPRGTGKTSSARILAKSLNCL 64
Query: 521 AT--DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A+ PCG C C +G + + +E+D + G+D +R I++ + R+K
Sbjct: 65 ASRVPTETPCGVCEVCRGIANGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ F +I
Sbjct: 123 VYAIDECHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLA 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L+ I+A+E + + +AL L+A + G LRDAE++LDQLSLL + +T V +LVG
Sbjct: 183 AMVQHLQAIAAQEQIQITSEALTLVAQLSQGGLRDAESLLDQLSLLPE-VTVERVWDLVG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
V+E LL LL+ ++ + + R R+L++ G +P+ ++ LAS D++
Sbjct: 242 SVAEPDLLALLDAIAQNNAEQLLDRTRQLLERGREPLTILQNLASCYRDLLIAKTAPHRN 301
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
A T+ + + + + K L +E Q++ S++ W TLL L
Sbjct: 302 DLVACTATTWQAMCDLVQQWNIATILDGQKNLKASEAQIKTSTQPRLWLEVTLLGL---- 357
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
+S Q S + STS+ V K PQ PQ + A +P +
Sbjct: 358 -----LPTTSTPQPSPVIHRN-ISTSKTPSVVKDTPQPQTAPQVVTASAHPPQPQTPPQQ 411
Query: 864 HLGEVLS--RIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQC 921
+ E +S I H+ S ++ AV + +V + L ++W Q
Sbjct: 412 EVAEPISPPPIVHHD------RSDIRTDEDEAVEIHTEVVATDV-------DLDQVWQQV 458
Query: 922 IERCHSKTLKQLLQVHGKLLSISE 945
++ + K L + HG L++I E
Sbjct: 459 LQNLPLPS-KALFKEHGSLVAIHE 481
>gi|17232424|ref|NP_488972.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7120]
gi|17134070|dbj|BAB76631.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 655
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 205/357 (57%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKNFAELVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ +PCG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 NSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIEK--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L S + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+++EN+N+ +A+ L+A + G LRDAE++LDQL+LL +T V +LVG
Sbjct: 184 AMVKHLSAIASKENINISLEAVTLVAQLSQGGLRDAESLLDQLALLPNEVTPEQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
VSE+ LL LL A++ D E V R+++D G +P+ ++ LA+ D++
Sbjct: 244 SVSEQDLLVLLA-AIAQDNPELVLDSTRQILDRGREPLTILQNLAAFYRDLLIAKTAPNR 302
Query: 758 RSLTEAELERLKHAL---------------KLLSEAEKQLRLSSERCTWFTATLLQL 799
+L + K + K L EAE Q++ +++ W TLL L
Sbjct: 303 HNLVACTQQTWKALVESAQSLPISTILLGQKHLQEAELQIKHTTQPRLWLEVTLLGL 359
>gi|428217762|ref|YP_007102227.1| DNA polymerase III subunits gamma and tau [Pseudanabaena sp. PCC
7367]
gi|427989544|gb|AFY69799.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena sp. PCC
7367]
Length = 684
Score = 245 bits (625), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/356 (37%), Positives = 203/356 (57%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F LIGQ + ++L N I++ RIAP YLF G RGTGKTSTA+I + +LNC+
Sbjct: 6 LHHKYRPQTFAALIGQEAIARTLTNAINQRRIAPAYLFTGSRGTGKTSTARIMAKSLNCL 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ D PCG C C G + + E+D + G+D +R +++ + R+K
Sbjct: 66 SYDAPTPTPCGTCDMCQSIAKGIALDVTEIDAASNTGVDNIRELIER--SQFAPVQARYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP+ VVFI TTD V +I SRCQ++ F +I
Sbjct: 124 VYAIDECHMLSTAAFNALLKTLEEPPEHVVFILATTDPQRVLSTIISRCQRFDFRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA LR+I+ E + + +AL L+A A G LRDAE++LDQLSLL IT V +LVG
Sbjct: 184 AMVAHLREIADTEQIEITQEALILVAQIAQGGLRDAESLLDQLSLLEGEITIEAVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E LL+L+ + ++ + +++ R++MD G +P++++ LA L D++
Sbjct: 244 SVPERDLLDLIAAIAADNSTQILEKVRQVMDRGREPLIVLQNLAGLYRDLLIAQAASDRH 303
Query: 759 SLTEA------ELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L L +L H+L + L +AE Q++ +++ W TLL L
Sbjct: 304 DLVALTSYGWDRLNQLAHSLSRAVILKGQQHLRDAEVQIKNTTQPRLWLEVTLLGL 359
>gi|434389958|ref|YP_007125664.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262536|gb|AFZ28484.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 447
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 155/425 (36%), Positives = 227/425 (53%), Gaps = 34/425 (8%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P F EL+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 17 QPLHLKYRPQSFTELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARILAKSLN 76
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C D PCG C C G S + +E+D + G++ +R I+ + +P S R
Sbjct: 77 CQHGDFPTPTPCGQCNSCTGISKGLSLDVVEIDAASNSGVENIRQIIDR-THIIPVNS-R 134
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KVFV+DE H L S+ + A LK LEEPP+ VVFI TT+I VP +I SRCQ++ F +I
Sbjct: 135 YKVFVLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFKRIG 194
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
D+V L I EE +N+ P+AL L+A + G LRD++ +LDQLSLL I + V E+
Sbjct: 195 VEDMVQHLNHIVTEELINITPEALRLVAQISSGCLRDSQCLLDQLSLLNITIDQNWVWEM 254
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
VG V E KLL ++E +D+ + R L++ G +P+V++ L S D++ +
Sbjct: 255 VGNVPEYKLLTMVERIAENDSNSIITIIRNLLEWGKEPLVILQNLTSFYRDMLIAKTSPS 314
Query: 757 GRS---LTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ LTE ++L A + L + E Q++LS++ W +L L
Sbjct: 315 SKEMVMLTEDTWQQLCQISKDWETTTILAAQQHLRQCEVQVKLSTQPQLWLEVGILGL-- 372
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE----- 856
L + S+ EDP T+ + G Q +P +S SL+E
Sbjct: 373 -----LPATNSTNSSQFVPIAEDPPWTNWKTPADAIAWGQQKLPN--MSLESLQEHWNSL 425
Query: 857 -PVNG 860
PVNG
Sbjct: 426 IPVNG 430
>gi|116074345|ref|ZP_01471607.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
gi|116069650|gb|EAU75402.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9916]
Length = 679
Score = 244 bits (624), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/358 (37%), Positives = 205/358 (57%), Gaps = 19/358 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQN + +L + + RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQNAIAATLGHALRSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+++D +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLSSDGPTPEPCGSCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ A L I+ +E + ++P+A+ ++A A G LRDAE++LDQLSLL I + V +L
Sbjct: 184 LDALEAHLTWIAEQEAIPIQPEAVHVVAQRAQGGLRDAESLLDQLSLLPAPIEADAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G V E+ L+ L E S D + V+ +R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQDLIALAEALASGDPLQLVESSRSLLDRGRDPGAVLQGLAGILRDLVLMAAAPD 303
Query: 757 GRSLTEA---------EL------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
LT EL +RL L +E+QLRLS + W L+ L
Sbjct: 304 RPELTSVSPQFRDQLPELAKRIGRQRLLQWQARLRGSEQQLRLSVQPRLWLEVLLMGL 361
>gi|87123287|ref|ZP_01079138.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
gi|86169007|gb|EAQ70263.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. RS9917]
Length = 597
Score = 244 bits (622), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 187/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ+++ +L + + RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQDVIAATLSHALRSDRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+++D +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLSSDTPTPEPCGTCELCTTISAGTALDVIEIDAASNTGVDNIRDLIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ A LR I+ +E + +EP+AL ++A A G LRDAE++LDQLSLL I + V EL
Sbjct: 184 LEALEAHLRWIAEQEAIGIEPEALHVVAQRAQGGLRDAESLLDQLSLLPAPIKAEAVWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++L+ L E + + ++ +R L+D G DP ++ LA+++ D++
Sbjct: 244 LGAVPEQELIGLAEALANGEPLPLLEGSRRLLDRGRDPGAVLQGLAAILRDLV 296
>gi|282895316|ref|ZP_06303518.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
gi|281199622|gb|EFA74482.1| AAA ATPase, central region protein [Raphidiopsis brookii D9]
Length = 663
Score = 243 bits (621), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 164/555 (29%), Positives = 270/555 (48%), Gaps = 67/555 (12%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N IS ++AP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAISLVKVAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ P CG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 QSGHPTPTPCGVCDICQGITKGYSLDVIEIDAASNTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIQLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L KI+ EN+ + DA+ L+A + G LRDAE++LDQL+LL ++ V +LVG
Sbjct: 184 AMVKHLSKIAHNENIPISQDAITLVAQISQGGLRDAESLLDQLALLPGDVSPEQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
VSE+ L LL+ +D+ + R+++D G +P++++ L + D++ +
Sbjct: 244 SVSEKDLFALLQAIAQNDSENVLDNTRKILDRGREPLIILQNLGAFYRDLLIAKTASSRQ 303
Query: 759 SL---------------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL---- 799
L TE ++ + + L AE QL+ +++ W TLL L
Sbjct: 304 DLVSCTQETWQQLVNFATELDITFILRGQQQLRTAEAQLKSTTQPRLWLEVTLLGLLPIT 363
Query: 800 -GSMHSPD--LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE 856
SM +P G+ + Q+ PS R+ Y++ + P
Sbjct: 364 QNSMVAPSNPSLHLGNIQNQNGTNHNVSPSHVYRQD--YQQANPP--------------- 406
Query: 857 PVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGE 916
NS+H + Y + + S +A + NI I + + L +
Sbjct: 407 --TNNSQH----------SHHYPEQATSSSSEALPNGSDKTPNITRQEIPSSSEYD-LNQ 453
Query: 917 IWAQCIERCHSKTLKQLLQVHGKLLSIS-EVERVLI--AYVAFGDGDIKSRAERFLSSIT 973
IW Q + + +++L+ +LL + ++ I A+ G D L I
Sbjct: 454 IWYQVLANLQPASRREMLRQMSQLLEFDGNLAKIGIKQAWYEKGKSD--------LGIIQ 505
Query: 974 NSIETVLRRNVEVRI 988
N+ +R++E+++
Sbjct: 506 NAFHQTFQRHIEIQL 520
>gi|427732172|ref|YP_007078409.1| DNA polymerase III subunits gamma and tau [Nostoc sp. PCC 7524]
gi|427368091|gb|AFY50812.1| DNA polymerase III, subunit gamma/tau [Nostoc sp. PCC 7524]
Length = 647
Score = 243 bits (620), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/357 (37%), Positives = 203/357 (56%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F E++GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKIFAEVVGQEAIATTLTNAIRTAKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
TD+ +PCG C C G S + +E+D + G+D +R +++ A R+K
Sbjct: 66 KTDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIRELIE--KAQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L S + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I+
Sbjct: 124 VYVIDECHMLSSAAFNALLKTLEEPPRHVVFVLATTDPQRVLPTIISRCQRFDFRRIELE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ L I++ EN+++ P A+ L+A + G LRDAE++LDQL+LL ++ V +LVG
Sbjct: 184 AMARHLSAIASNENIHISPAAITLVAQLSQGGLRDAESLLDQLALLSGEVSPDRVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRA-RELMDSGVDPMVLMSQLASLIMDIIAG------ 751
VSE LL LL A++ D E V A R+++D G +P+ ++ LA+ D++
Sbjct: 244 SVSERDLLALLG-AIAQDHPEAVLDATRQILDRGREPLTILQNLAAFYRDLLIAKTAPNR 302
Query: 752 ---------TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
T+T + + K L +AE Q++ +++ W TLL L
Sbjct: 303 HNLVACTQQTWTALVECAQSLSMSTILLGQKHLQQAELQIKNTTQPRLWLEVTLLGL 359
>gi|428209786|ref|YP_007094139.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428011707|gb|AFY90270.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 681
Score = 243 bits (619), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 212/372 (56%), Gaps = 21/372 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L + I R +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTHAIERQKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ +PCG C C G + + +E+D + G+D VR +++ A R+K
Sbjct: 66 NSNKPTAQPCGVCVVCQGVAKGATLDVIEIDAASNTGVDNVRELIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYAIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++ L I+A+E++++ P+A+ L+A A G LRDAE++LDQLSLL +T + +LVG
Sbjct: 184 AMIGHLSAIAAKESIDITPEAIHLVASFAQGGLRDAESLLDQLSLLAGVVTVERIWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V+E LLE+L+ + + R +MD G +P+ L+ LA
Sbjct: 244 SVAEPDLLEILQAIAQNQPEALLDAVRRIMDRGREPLTLLQNLAGFYRDLLVAKTAPNRN 303
Query: 747 DIIAGTYTIGGRSLTEAELERLKHAL---KLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
D+IA T T+A++ + + L + L+++E Q++ +++ W +L LG +
Sbjct: 304 DLIAVTPATWDALCTQAKVWDISNILVGQQHLAKSEAQIKNTTQPRLWLEVSL--LGLLP 361
Query: 804 SPDLTQSGSSRR 815
S L + G+ R
Sbjct: 362 SASLREQGAGSR 373
>gi|113474658|ref|YP_720719.1| DNA polymerase III subunits gamma and tau [Trichodesmium erythraeum
IMS101]
gi|110165706|gb|ABG50246.1| DNA polymerase III, subunits gamma and tau [Trichodesmium
erythraeum IMS101]
Length = 695
Score = 243 bits (619), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 133/366 (36%), Positives = 204/366 (55%), Gaps = 19/366 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+++ Q+L N I RIAP YLF GPRGTGKTS+A++ + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQDVIAQTLTNAIHTKRIAPAYLFTGPRGTGKTSSARVLAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ D P CG C C G + + +E+D + G+D +R +++ + R+K
Sbjct: 66 SYDHPTPSPCGTCNVCVGITKGSTLDVIEIDAASNTGVDNIRELIER--SQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDE H+L + A LK LEEPP+ VVFI TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDEVHMLSVSAFNALLKTLEEPPKGVVFILATTDPQRVLATIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ EE +++ +A+ +IA A G LRDAE++LDQLSLL IT V +LVG
Sbjct: 184 AMVKHLHHIAIEEKIDITTEAIQMIAQIAQGGLRDAESLLDQLSLLAGEITVERVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E L+ L+E + ++ + +K R++MD G +P++++ LA D++ +
Sbjct: 244 AVPERDLMVLVEAIAADNSIKVLKCTRQIMDRGKEPIIVLQNLAGFYRDLLIAKTAPTSK 303
Query: 759 ---SLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+LT+ E+L K L +E Q++ +++ W TLL L
Sbjct: 304 NLVALTKPTWEKLCQFSQDWDIGTILAGQKHLQTSEVQIKNTTQPRLWLEVTLLGLLPSA 363
Query: 804 SPDLTQ 809
P Q
Sbjct: 364 LPKFNQ 369
>gi|443329784|ref|YP_007378855.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682410|gb|AFZ61174.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 437
Score = 242 bits (618), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 151/423 (35%), Positives = 229/423 (54%), Gaps = 27/423 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P F EL+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 4 QPLHLKYRPQSFVELVGQRAIATTLTNAITSQRIAPAYLFTGPRGTGKTSSARIFAKSLN 63
Query: 519 CV--ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C ++ PCG C C G S + +E+D + G++ +R I+ + +P S R
Sbjct: 64 CQHGSSPTPTPCGLCNSCTSISKGLSLDVVEIDAASNSGVENIRQIIDR-THIIPVNS-R 121
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KVFV+DE H L S+ + A LK LEEPP+ VVFI TT+I VP +I SRCQ++ F +I
Sbjct: 122 YKVFVLDEVHSLSSQGFQALLKTLEEPPKNVVFILCTTEIHKVPATIISRCQRFDFKRIG 181
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
D++ L +I EE +++ P+AL LIA + G LRD++ +LDQLSLL I + V E+
Sbjct: 182 VEDMIQHLNQIVNEELIDITPEALRLIAQISSGCLRDSQCLLDQLSLLNITIDQNWVWEM 241
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
VG V E +LL ++E +D+ + R L++ G +P+V++ L S D++ +
Sbjct: 242 VGNVPEYELLTMVERIAENDSDSVINIIRNLLEWGKEPLVILQNLTSFYRDMLIAKTSPS 301
Query: 757 GRS---LTEAELERLKHALK------------LLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ LTE ++L K L + E Q++LS++ W +L L
Sbjct: 302 SKEMVMLTEDTWQQLCQITKSWETTTILAGQQHLRQCEVQIKLSTQPQLWLEVGILGL-- 359
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPS----STSREAVVYKRMSGPQYMPQNAVSPASLREP 857
P SS +T E+P T +A+V+ + P ++ +L P
Sbjct: 360 --LPAANSINSSNSNQFVSTSENPPWTNWKTPNDAIVWAQQQLPNMSVESLQEHWNLLIP 417
Query: 858 VNG 860
VNG
Sbjct: 418 VNG 420
>gi|254414978|ref|ZP_05028741.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
gi|196178125|gb|EDX73126.1| DNA polymerase III, subunits gamma and tau, putative
[Coleofasciculus chthonoplastes PCC 7420]
Length = 700
Score = 242 bits (618), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 200/356 (56%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + Q+L N I + ++AP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIAQTLTNAIRQEKVAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
TD+ +PCG C C G + + E+D + G+D +R I++ A R+K
Sbjct: 66 TTDKPTPQPCGTCDVCRTIAQGTALDITEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+V+DECH+L S + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVVDECHMLSSAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLA 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L+ I+ +E++N+ +A+ L+A A G LRDAE++LDQLSLL IT + +LVG
Sbjct: 184 AMVKHLQYIATKESINITTEAITLVAQVAQGGLRDAESLLDQLSLLAGEITVECIWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E LL L + + + R LMD G +P+V++ LA D++ +
Sbjct: 244 AVPERDLLALSQAITDNHAQAVLDCCRNLMDRGREPLVVLQNLAGFYRDLLIAKTAPSRQ 303
Query: 759 SL------TEAELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L T +L L ++ + L +E Q++ +++ W TLL L
Sbjct: 304 DLVAVTPPTWKQLGELAQSMDTTDILQGQQHLKSSEVQVKNTTQPRLWLEVTLLGL 359
>gi|33862332|ref|NP_893892.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9313]
gi|33640445|emb|CAE20234.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9313]
Length = 606
Score = 242 bits (617), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/296 (40%), Positives = 182/296 (61%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD L+GQ+ + +L + + RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ DQ +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ E + +EP+AL ++A A G LRDAE++LDQLSLL I + V EL
Sbjct: 184 LEALEQHLEMIATREAIPIEPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G V E++LL+L E +D ++ R L++ G DP L+ LA+++ D++ T
Sbjct: 244 MGAVPEQELLKLAEALAQADPLSLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMT 299
>gi|443477235|ref|ZP_21067096.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
gi|443017680|gb|ELS32071.1| DNA polymerase III, subunits gamma and tau [Pseudanabaena biceps
PCC 7429]
Length = 652
Score = 241 bits (614), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 245/453 (54%), Gaps = 39/453 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N ++ GRIAP YLF G RGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQIFADLVGQEAIAHTLSNALNTGRIAPAYLFTGARGTGKTSSARIMAKSLNCL 65
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D PCG C C+ +G + + E+D + G+D +R +++ A RFK
Sbjct: 66 SSDSPTPHPCGKCELCHSIANGNALDITEIDAASNTGVDNIRELIER--AQFAPVKARFK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDECH+L + + A LK LEEPP RV FI TTD V +I SRCQ++ F +I
Sbjct: 124 VYIIDECHMLSTAAFNALLKTLEEPPDRVTFILATTDPQRVLPTIISRCQRFDFRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L KI+A EN+N+ +AL L+A A G LRDAE++LDQLSLL IT V +LVG
Sbjct: 184 AMVKHLGKIAANENINIHIEALTLVAQIAQGGLRDAESLLDQLSLLDGEITVEAVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E+ LL L+E + + + + R +MD G +P++++ LA++ D++ T R
Sbjct: 244 SVPEQDLLSLVEAIAADHSTQLIDYVRRIMDRGREPLIVLQNLANVYRDLLIAK-TASDR 302
Query: 759 S----LTEAELERLKHALKLLS------------EAEKQLRLSSERCTWFTATLLQL--- 799
S +T + ERL + L+ AE Q+R S++ W TL+ L
Sbjct: 303 SDLVAMTSSGWERLIQLAQGLAIPNILLGQQHLRSAELQIRNSTQPRLWLEVTLMGLLPS 362
Query: 800 --GSMHSPDLTQSGSSRRQSSRTTEEDPSSTSR----------EAVVYKRMSGPQY-MPQ 846
G++ + + R +PS T + + V + S PQ +PQ
Sbjct: 363 AQGAIAQVPPSNPSAKSFIPPRNISPNPSITQQLPKTAPVEQVPSPVVPQTSVPQTSVPQ 422
Query: 847 NAVSPASLREPVNGNSRHLGEVLSRI-DGHNSY 878
+V P + EPV+ + L +V + I GH+ +
Sbjct: 423 TSV-PQIISEPVSPSISPLPQVETPIASGHDDF 454
>gi|428304953|ref|YP_007141778.1| DNA polymerase III subunits gamma and tau [Crinalium epipsammum PCC
9333]
gi|428246488|gb|AFZ12268.1| DNA polymerase III, subunits gamma and tau [Crinalium epipsammum
PCC 9333]
Length = 656
Score = 241 bits (614), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/505 (33%), Positives = 253/505 (50%), Gaps = 48/505 (9%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L KY+P F +L+GQ + +L N I RIAP YLF G RGTGKTS+A+I + +
Sbjct: 2 NYEPLHHKYRPQTFAQLVGQEAIATTLSNAIRLRRIAPAYLFTGARGTGKTSSARILAKS 61
Query: 517 LNCVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC+++D + PCG C C G + + +E+D + G+D +R +++ A
Sbjct: 62 LNCLSSDVPTSSPCGKCEVCRAIAFGSALDIIEIDAASNTGVDNIRELIER--AQFAPVQ 119
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R KV++IDE H+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ F +
Sbjct: 120 CRHKVYIIDEVHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRR 179
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
I + LRKI+ EN+N+ +A+ L+A A G LRDAE++LDQLSLL ++T V
Sbjct: 180 IPLDPMAQHLRKIAEAENINITDEAVTLVAQMAQGGLRDAESLLDQLSLLAGQVTVEKVW 239
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIMD-IIAGT 752
+L G V E L+ L++ A++++ AETV RAR LM+ G +P+V++ LA D +IA T
Sbjct: 240 DLTGAVPERDLIVLVQ-AIAANNAETVLDRARSLMERGREPLVVLQNLAGFYRDLLIAKT 298
Query: 753 YTIGG--RSLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQ 798
G +LT ++L + K L ++E Q++ +++ W TLL
Sbjct: 299 APSRGDLVALTAQTWQQLSQEAKNWDANQILASQKHLKDSEVQIKNTTQPRLWLEVTLL- 357
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV 858
L S + + + P+ E P PQ P + PV
Sbjct: 358 -------GLLPSAVTYQTPHQPIATSPTPKIEEIRSQTPAKSPPPAPQQTSPPIT---PV 407
Query: 859 NGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLG--E 916
N S + I P+ + S+ N V ++ +T NS L +
Sbjct: 408 NNPSP------TPIASEPVKELPTPEPIP-------SEAAN-VSSSQVTEVNSHSLTLEQ 453
Query: 917 IWAQCIERCHSKTLKQLLQVHGKLL 941
+W Q I K L++ H +LL
Sbjct: 454 LWQQVIANIRRPLTKPLVRDHCRLL 478
>gi|416396022|ref|ZP_11686398.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
gi|357263028|gb|EHJ12088.1| DNA polymerase III subunits gamma and Tau [Crocosphaera watsonii WH
0003]
Length = 687
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 209/356 (58%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A + PCG C C G + + +E+D + G+D +R I++ + R+K
Sbjct: 67 AVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP+RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 125 VYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLE 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V+ L I+ +EN+ +EP+AL L+A A+G LRDAE++LDQLSLL ITS V +LVG
Sbjct: 185 AMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVG 244
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL+ S++ ++ R+LMD G +P+V++ LA +
Sbjct: 245 AVPERDLLSLLKAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPERS 304
Query: 747 DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++A T T TEA + E + + L E+E QL+ +++ W TLL L
Sbjct: 305 DLVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|33864597|ref|NP_896156.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
gi|33632120|emb|CAE06576.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 8102]
Length = 593
Score = 240 bits (613), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 187/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L + ++ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ +D +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNSDGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ A L I+ +E + ++P+A+ ++AL + G LRDAE++LDQLSLL I ++ V +L
Sbjct: 184 LDALEAHLSWIAEQEAIEIQPEAIHVVALRSQGGLRDAESLLDQLSLLPPPIEATAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL+L++ S++ ++ R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLQLVQAMSSAEPVALLEATRNLLDRGRDPGAVLQGLAGILRDLV 296
>gi|67923223|ref|ZP_00516710.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
gi|67854954|gb|EAM50226.1| DNA-directed DNA polymerase [Crocosphaera watsonii WH 8501]
Length = 687
Score = 240 bits (612), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 209/356 (58%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLNNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A + PCG C C G + + +E+D + G+D +R I++ + R+K
Sbjct: 67 AVEAPTASPCGECEVCRAIARGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP+RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 125 VYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLE 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V+ L I+ +EN+ +EP+AL L+A A+G LRDAE++LDQLSLL ITS V +LVG
Sbjct: 185 AMVSHLTVIAQKENIEIEPEALTLVAQIANGGLRDAESLLDQLSLLSGSITSEKVWDLVG 244
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL+ S++ ++ R+LMD G +P+V++ LA +
Sbjct: 245 AVPERDLLSLLKAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIAKTAPERS 304
Query: 747 DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++A T T TEA + E + + L E+E QL+ +++ W TLL L
Sbjct: 305 DLVAVTSTTWDDLCTEANQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|428223195|ref|YP_007107365.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. PCC
7502]
gi|427996535|gb|AFY75230.1| DNA polymerase III, subunit gamma/tau [Synechococcus sp. PCC 7502]
Length = 601
Score = 239 bits (611), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 215/391 (54%), Gaps = 26/391 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N + RIAP YL G RGTGKTSTA+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLSNAMKTQRIAPAYLLTGARGTGKTSTARIMAKSLNCL 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ D PCG C C I G + + E+D + G++ +R +++ + R+K
Sbjct: 66 SFDVPTATPCGKCEMCLSIIRGNALDITEIDAASNTGVENIRDLIER--SQFAPVQARYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP RVVFI TTD V +I SRCQ++ F +I
Sbjct: 124 VYAIDECHMLSTSAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L +I+ EN+N+ P+AL L+A A G LRDAE++LDQLSL I + V +LVG
Sbjct: 184 PMVQHLTQIAQIENININPEALLLVAQMAQGGLRDAESLLDQLSLHVGEIKNETVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
V E LLE+LE ++ +++ R++MD G +P+ ++ L D++
Sbjct: 244 TVPERDLLEILEAIALQNSVAVIEKIRQIMDRGREPLTVLQSLGGFYRDLLIAKTAGDRQ 303
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLL----QL 799
AGT+ + E LE + + L AE Q++ +++ W TL+ Q+
Sbjct: 304 DLVALTAGTWAKLNQIAQEFPLESILLGQQHLRSAEVQIKNTTQPRLWLEITLIGLFNQV 363
Query: 800 GSMHSPDLTQSGS--SRRQSSRTTEEDPSST 828
G H +T + S + + + T ++PSST
Sbjct: 364 GLSHQ-SITSNVSVLTSKTPALTPIQNPSST 393
>gi|113955220|ref|YP_729300.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CC9311]
gi|113882571|gb|ABI47529.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp.
CC9311]
Length = 643
Score = 239 bits (609), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 118/293 (40%), Positives = 186/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L + ++ GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C++ D +PCG C CN G + + +E+D + G+D +R +++ S P + R
Sbjct: 66 CLSHDGPTPQPCGTCELCNTIARGTALDVIEIDAASNTGVDNIRDLIER-SRFAPVQA-R 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ + L I+ +E++ ++P+AL ++A A G LRDAE++LDQLSLL I + V +L
Sbjct: 184 LEALNSHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L E + ++ +R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLNLAEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLV 296
>gi|254431925|ref|ZP_05045628.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
gi|197626378|gb|EDY38937.1| DNA polymerase III, gamma and tau subunit [Cyanobium sp. PCC 7001]
Length = 645
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 181/297 (60%), Gaps = 5/297 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + ++ N + GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATMANALRSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVAT--DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C A PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CTAAAGPTPDPCGRCELCTTIAAGNALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ LR I+AEE + + P+AL ++A A G LRDAE++LDQLSLL + V +L
Sbjct: 184 LESLEGHLRWIAAEEAIAITPEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEVDAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-IIAGT 752
+G V E++LL+L ++ ++ R L++ G +P ++ L SL+ D ++AGT
Sbjct: 244 LGAVPEQELLQLAGALAGAEPIALIEATRHLLERGREPAAVLQGLTSLLRDLVLAGT 300
>gi|126658850|ref|ZP_01729993.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
gi|126619800|gb|EAZ90526.1| DNA-directed DNA polymerase [Cyanothece sp. CCY0110]
Length = 692
Score = 238 bits (606), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 157/448 (35%), Positives = 239/448 (53%), Gaps = 39/448 (8%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
++ + L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I
Sbjct: 6 IMSSYEPLHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARIL 65
Query: 514 SAALNCVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
+ +LNC+A + PCG C C G + + +E+D + G+D +R I++ +
Sbjct: 66 AKSLNCLAVEVPTAAPCGQCEVCRAITRGSALDVIEIDAASNTGVDNIREIIER--SQFA 123
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
R+KV+VIDECH+L + A LK LEEPP+RV+F+ TTD V +I SRCQ++
Sbjct: 124 PVQCRYKVYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTILSRCQRFD 183
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS 691
+ +I +V L I+ +EN+ +E +AL L+A A+G LRDAE++LDQLSLL ITS
Sbjct: 184 YRRIPLEAMVNHLTIIAQKENIEIETEALILVAQIANGGLRDAESLLDQLSLLSGSITSE 243
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM----- 746
V +LVG V E+ LL LL+ S++ ++ R+LMD G +P+V++ LA +
Sbjct: 244 KVWDLVGAVPEKDLLSLLQAINSNNPEIVIESCRKLMDRGREPLVVLQNLAGFYLNLLIA 303
Query: 747 -------DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATL 796
D++A T T +EA + E + + L E+E QL+ +++ W TL
Sbjct: 304 KTAPTRSDLVAVTSTTWDDLCSEAKHWKTETILRGQQKLKESEVQLKNTTQPRLWLEVTL 363
Query: 797 LQ-LGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAV------ 849
L L +P++ S+ ++ E K + PQ PQ +
Sbjct: 364 LSLLPDACTPEVIIQSSNISTQTKNNNES-----------KLTNLPQQKPQAKIVEKQFQ 412
Query: 850 -SPASLREPVNGNSRHLGEVLSRIDGHN 876
P +L +P N L E+L D N
Sbjct: 413 DQPKALYKP-NETITELSEILINNDDTN 439
>gi|332710811|ref|ZP_08430748.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
gi|332350364|gb|EGJ29967.1| DNA polymerase III, subunits gamma and tau [Moorea producens 3L]
Length = 763
Score = 237 bits (605), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 136/356 (38%), Positives = 209/356 (58%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + ++L N I RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQRFADLVGQDAIAKTLTNAIESERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
TD P CG C C + G S + E+D + G+D +R I++ A R+K
Sbjct: 66 KTDLPTPFPCGECHVCREIAGGLSLDVTEMDAASHTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + + LK LEEPP+RVVFI TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSTAAFNSLLKTLEEPPERVVFILATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V+ L+ I+ +EN+ + PDAL L+A A G LRDAE++LDQLSLL +++T V +LVG
Sbjct: 184 AMVSHLKDIAVKENITITPDALTLVAQGAQGGLRDAESLLDQLSLLDEQVTVEQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ E+ LL LL SS+ +++ L+D G +P+V++ LAS D++
Sbjct: 244 ALPEQDLLALLNAIASSEAVAVLEQCGYLIDRGREPLVILQNLASFYRDLLIAKTAPARN 303
Query: 759 SLT---------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+L+ + ++E + + L ++E Q++ +++ W TL+ L
Sbjct: 304 NLSAITLPTWQKLCELAKQLDVESILRGQQHLKDSEIQIKNTTQPRLWLEVTLMGL 359
>gi|317968362|ref|ZP_07969752.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0205]
Length = 614
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 183/293 (62%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L N + GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+++D +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLSSDHPTPEPCGSCELCTSIANGNALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TT+ V +I SRCQ++ + +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTEPQRVLPTILSRCQRFDYRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ EEN+ + P+AL ++A A G LRDAE++LDQLSLL + + V EL
Sbjct: 184 LDALEQHLGWIAKEENIQITPEALHVVAQRAQGGLRDAESLLDQLSLLPGPVEPTAVWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL+L + ++ ++ R L++ G +P ++ +A L+ D++
Sbjct: 244 LGAVPEQELLQLAQALAGAEPLGVIEAIRNLLERGREPGAVLQGMAGLLRDLV 296
>gi|172037444|ref|YP_001803945.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. ATCC
51142]
gi|354553674|ref|ZP_08972980.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
gi|171698898|gb|ACB51879.1| DNA polymerase III gamma and tau subunits [Cyanothece sp. ATCC
51142]
gi|353554391|gb|EHC23781.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. ATCC
51472]
Length = 683
Score = 236 bits (603), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 206/356 (57%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLSNAIASQRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A PCG C C G + + +E+D + G+D +R I++ + R+K
Sbjct: 67 AVKVPTASPCGQCEVCRAIARGSALDVIEIDAASNTGVDNIREIIER--SQFAPVQCRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP+RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 125 VYVIDECHMLSVAAFNALLKTLEEPPERVIFVLATTDPQRVLPTIISRCQRFDYRRIPLE 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ +EN+ +E +AL L+A A+G LRDAE++LDQLSLL IT V +LVG
Sbjct: 185 AMVEHLTIIAQKENIEIEAEALTLVAQIANGGLRDAESLLDQLSLLSGGITPEKVWDLVG 244
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL LL+ S++ ++ R+LMD G +P+V++ LA+ +
Sbjct: 245 AVPERDLLSLLKAINSNNPELVIESCRKLMDRGREPLVVLQNLAAFYLNLLIAKTAPTRS 304
Query: 747 DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++A T T TEAE E + + L E+E QL+ +++ W TLL L
Sbjct: 305 DLVAVTSTTWDDLCTEAEQWQTETILRGQQKLKESEVQLKNTTQPRLWLEVTLLGL 360
>gi|56750639|ref|YP_171340.1| DNA polymerase III subunits gamma and tau [Synechococcus elongatus
PCC 6301]
gi|81299721|ref|YP_399929.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
gi|56685598|dbj|BAD78820.1| DNA polymerase III gamma and tau subunits [Synechococcus elongatus
PCC 6301]
gi|81168602|gb|ABB56942.1| DNA polymerase III, tau subunit [Synechococcus elongatus PCC 7942]
Length = 652
Score = 236 bits (601), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 205/366 (56%), Gaps = 20/366 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC- 519
L KY+P F +L+GQ + ++L +++ RIAP YLF GPRGTGKTS+A+I + +LNC
Sbjct: 6 LHHKYRPQCFADLVGQEAIARTLSQALAQQRIAPAYLFTGPRGTGKTSSARILAKSLNCQ 65
Query: 520 -VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
PCG C C G + + +E+D + G+D +R +++ A RFK
Sbjct: 66 QSTVPTASPCGECEACRAIARGNALDVIEIDAASNTGVDNIRELIER--AQFAPVQCRFK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLQ 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ L+ I+ +E++ +EP A+ L+A A G LRDAE++LDQL LL +T V +L+G
Sbjct: 184 AMTDHLQVIAQKESIEIEPTAIALVAQLAQGGLRDAESLLDQLGLLPPPVTPEAVWDLLG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E +LL+LLE ++D + R+L+D G +P+ ++ L + D++ R
Sbjct: 244 AVPERQLLQLLEAIAANDPEALLTLIRQLLDRGREPLTVLQNLTAFSRDLLIARTAPQRR 303
Query: 759 SL---TEAELERL---------KHALKL---LSEAEKQLRLSSERCTWFTATLL-QLGSM 802
L TEA + L + L+L L ++E Q++ +++ W LL L S
Sbjct: 304 DLTTVTEATWQELCTFAEDWTPEQILQLQQHLRQSELQIKNTTQPRLWLEVALLGLLPSA 363
Query: 803 HSPDLT 808
+P T
Sbjct: 364 QAPVTT 369
>gi|260435304|ref|ZP_05789274.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
gi|260413178|gb|EEX06474.1| DNA polymerase III, tau subunit [Synechococcus sp. WH 8109]
Length = 626
Score = 236 bits (601), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L + ++ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ ++ +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E + ++P+A+ ++A + G LRDAE++LDQLSLL I ++ V +L
Sbjct: 184 LNALNKHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LLEL+ S++ + +K R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLELVGAMSSAEPVQLLKATRNLLDRGRDPGAVLQGLAGMLRDLV 296
>gi|428204196|ref|YP_007082785.1| DNA polymerase III subunits gamma and tau [Pleurocapsa sp. PCC
7327]
gi|427981628|gb|AFY79228.1| DNA polymerase III, subunit gamma/tau [Pleurocapsa sp. PCC 7327]
Length = 688
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 157/424 (37%), Positives = 239/424 (56%), Gaps = 34/424 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTNAIVSQRIAPAYLFAGPRGTGKTSSARILTKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++++ P CG C C G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 SSERPTPTPCGKCEVCRAIARGSALDAIEIDAASNTGVDNIRDLIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L + + A LK LEEPP+RV+FI TTD V +I SRCQ++ F +I
Sbjct: 124 VYAIDECHMLSTAAFNALLKTLEEPPERVIFILATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+VA L+ I+++EN+ + +A+ L+A A+G LRDA+++LDQLSLL +IT V +LVG
Sbjct: 184 SMVAHLKYIASQENIEINDEAIILVAQIANGGLRDAQSLLDQLSLLSGKITPDRVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETV-KRARELMDSGVDPMVLMSQLASLIM----------- 746
V+E LL+LL A++SD AE V ++ R LM+ G +P+V++ LA+ +
Sbjct: 244 SVAERDLLKLLR-AIASDKAEAVLEQCRHLMNRGREPLVILQNLANFYLNLLIAKTAPNR 302
Query: 747 -DIIAGTYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLL-QLGS 801
D++A T + + EA EL + + L ++E QL+ +++ W TLL L S
Sbjct: 303 PDMVAVTSSTWQQLCQEAQRWELNAILRGQQHLKDSEAQLKNTTQPRLWLEVTLLGLLPS 362
Query: 802 MHSPDLTQSG-----SSRRQSSRTTEEDPSSTSREAVV-------YKRMSGPQYMPQNAV 849
+ P G S S R T+ PS+++ A R P PQ
Sbjct: 363 AYHPGGAVVGQPPTSSEIALSRRATQLQPSASNSMATTPSMPPQEKPRSQLPTPAPQAID 422
Query: 850 SPAS 853
SPA+
Sbjct: 423 SPAA 426
>gi|218246891|ref|YP_002372262.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8801]
gi|218167369|gb|ACK66106.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8801]
Length = 648
Score = 235 bits (599), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 211/357 (59%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 521 A-TDQTK-PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A +D T PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 67 AFSDPTATPCGKCEVCRAITRGSALDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 125 VYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPLA 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V+ L KI+ +E +++ DAL L+A A+G LRDAE++LDQLSLL IT+ V ELVG
Sbjct: 185 AMVSHLGKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELVG 244
Query: 699 VVSEEKLLELLELAMSSDTAE-TVKRARELMDSGVDPMVLMSQLASLIM----------- 746
V E+ LL LL+ A++S+ AE + R R LM+ G +P+V++ LA +
Sbjct: 245 AVPEQDLLLLLQ-AIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNR 303
Query: 747 -DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++A T EA LE + + L ++E QL+ +++ W TLL L
Sbjct: 304 PDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSL 360
>gi|352096779|ref|ZP_08957535.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
gi|351676001|gb|EHA59159.1| DNA polymerase III, subunits gamma and tau [Synechococcus sp. WH
8016]
Length = 652
Score = 235 bits (599), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 184/293 (62%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L + ++ GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGHALTSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C++ D +PCG C C G + + +E+D + G+D +R +++ S P + R
Sbjct: 66 CLSHDGPTPQPCGTCELCTTIARGTALDVIEIDAASNTGVDNIRDLIER-SRFAPVQA-R 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E++ ++P+AL ++A A G LRDAE++LDQLSLL I + V +L
Sbjct: 184 LEALHQHLAWIAEQESIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKADAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L E + ++ +R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLNLTEALAEGEPLTLLEASRRLLDRGRDPGAVLQGLAGILRDLV 296
>gi|116071743|ref|ZP_01469011.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
gi|116065366|gb|EAU71124.1| DNA-directed DNA polymerase [Synechococcus sp. BL107]
Length = 636
Score = 234 bits (598), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L N ++ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C +D +PCG C C SG + + +E+D + G+D +R +++ S P + R
Sbjct: 66 CQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIER-SRFAPVQA-R 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E++ ++P+A+ ++A + G LRDAE++LDQLSLL I ++ V +L
Sbjct: 184 LDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEANAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L + SS+ ++ R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGSVLQGLAGVLRDLV 296
>gi|78183642|ref|YP_376076.1| DNA-directed DNA polymerase [Synechococcus sp. CC9902]
gi|78167936|gb|ABB25033.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9902]
Length = 625
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 183/293 (62%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L N ++ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAITATLGNALTSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C +D +PCG C C SG + + +E+D + G+D +R +++ + R
Sbjct: 66 CQNSDGPTPEPCGTCDLCRTIASGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E++ ++P+A+ ++A + G LRDAE++LDQLSLL I ++ V +L
Sbjct: 184 LDALEQHLTWIAEQESIAIQPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEANAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L + SS+ ++ R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLALAQAMTSSEPVALLEATRNLLDRGRDPGAVLQGLAGVLRDLV 296
>gi|78211617|ref|YP_380396.1| DNA polymerase III, tau subunit [Synechococcus sp. CC9605]
gi|78196076|gb|ABB33841.1| DNA-directed DNA polymerase [Synechococcus sp. CC9605]
Length = 614
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 185/293 (63%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L + ++ RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGHALTSNRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ ++ +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNSEGPTPEPCGTCELCTTIAAGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E + ++P+A+ ++A + G LRDAE++LDQLSLL I ++ V +L
Sbjct: 184 LDALNTHLSWIAEQEAIEIKPEAIHVVAQRSQGGLRDAESLLDQLSLLPPPIEAAAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LLEL+ S++ + ++ R L+D G DP ++ LA ++ D++
Sbjct: 244 LGAVPEQELLELVGAMSSAEPVQLLEATRNLLDRGRDPGAVLQGLAGMLRDLV 296
>gi|257059952|ref|YP_003137840.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 8802]
gi|256590118|gb|ACV01005.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
8802]
Length = 650
Score = 234 bits (596), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 210/357 (58%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 7 LHHKYRPQTFADLVGQEAIATTLTNAIAAKRIAPAYLFTGPRGTGKTSSARILAKSLNCL 66
Query: 521 A-TDQTK-PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A +D T PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 67 AFSDPTATPCGKCEVCRAIARGSALDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP RV+F+ TTD V +I SRCQ++ + +I
Sbjct: 125 VYVIDECHMLSVAAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDYRRIPLD 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L KI+ +E +++ DAL L+A A+G LRDAE++LDQLSLL IT+ V ELVG
Sbjct: 185 AMVNHLSKIAQQETIDIAQDALILVAQIANGGLRDAESLLDQLSLLSGTITTDKVWELVG 244
Query: 699 VVSEEKLLELLELAMSSDTAE-TVKRARELMDSGVDPMVLMSQLASLIM----------- 746
V E+ LL LL+ A++S+ AE + R R LM+ G +P+V++ LA +
Sbjct: 245 AVPEQDLLLLLQ-AIASNNAELVIDRCRHLMNRGREPLVVLQNLAGFYLNLLIAKTAPNR 303
Query: 747 -DIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++A T EA LE + + L ++E QL+ +++ W TLL L
Sbjct: 304 PDMVAVTAPTWQALCNEAHQWNLETILQGQQRLKDSEFQLKNTTQPRLWLEVTLLSL 360
>gi|218441342|ref|YP_002379671.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7424]
gi|218174070|gb|ACK72803.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 730
Score = 233 bits (594), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 132/352 (37%), Positives = 205/352 (58%), Gaps = 19/352 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + Q+L+N I+ RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFMDLVGQEAIAQTLINAITTNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D+ P CG C C + + +E+D + G+D +R I++ A R+K
Sbjct: 66 SSDKPTPIPCGTCEVCKAIARSSALDIIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP VVF+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSVAAFNALLKTLEEPPNHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D+V L+ I+ +E+++++ +A+ L+A A+G LRDAE++LDQLSLL IT + V ELVG
Sbjct: 184 DMVKHLKLIANKESIDIDDEAITLVAQIANGGLRDAESLLDQLSLLSGTITPARVWELVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--------- 749
+ E LL+LL+ S D + R LM+ G +P+ ++ LA ++++
Sbjct: 244 AIPELDLLKLLKAIASKDPTHILDSCRHLMNRGKEPLTILQNLAGFYLNLVIAKTAPTRS 303
Query: 750 ------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTAT 795
A T+T + + LE + + L E+E QL+ +++ W T
Sbjct: 304 DLVAVTASTWTQLCQEAQQWNLEEILQGQQHLKESEAQLKHTTQPRLWLEVT 355
>gi|318043030|ref|ZP_07974986.1| DNA polymerase III subunits gamma and tau [Synechococcus sp.
CB0101]
Length = 622
Score = 232 bits (592), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 115/293 (39%), Positives = 180/293 (61%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD+L+GQ + +L N + GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDQLVGQEAIAATLGNALRSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C++ D +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CISGDGPTPEPCGTCELCTSIANGNALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E +++ +AL ++A A G LRDAE++LDQLSLL + V EL
Sbjct: 184 LDALERHLGWIAEQEQISITAEALHVVAQRAQGGLRDAESLLDQLSLLPPPVEPQAVWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL+L E + + ++ R L++ G +P ++ LA L+ D++
Sbjct: 244 LGAVPEQELLQLAESLAAGEPLGLIEAIRTLLERGREPSAVLQGLAGLLRDLV 296
>gi|148241162|ref|YP_001226319.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. RCC307]
gi|147849472|emb|CAK26966.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. RCC307]
Length = 604
Score = 232 bits (592), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/291 (40%), Positives = 183/291 (62%), Gaps = 4/291 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P FD+L+GQ + +L + RGRIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQRFDQLVGQEAIAATLSQALQRGRIAPAYLFSGPRGTGKTSSARILARSLNCL 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++D +PCG C C +G + + +E+D + G+D +R +++ + R+K
Sbjct: 66 SSDGPTAEPCGTCELCTAIAAGGALDVIEIDAASNTGVDNIRDLIER--SRFAPVQARWK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLQ 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ L I+ +E +N+ P+A+ L+A A G LRDAE++LDQLSLL + V EL+G
Sbjct: 184 ALEQHLLWIAEQEAINITPEAVHLVAQLAQGGLRDAESLLDQLSLLPPPVEPEAVWELLG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V E++LL+L +SD + ++ R+L+D G +P ++ LA L+ D++
Sbjct: 244 AVPEQELLQLAAALQASDPLDLLQSCRQLLDRGREPAAVLQGLAGLLRDLV 294
>gi|170078311|ref|YP_001734949.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
gi|169885980|gb|ACA99693.1| DNA-directed DNA polymerase III chain dnaX [Synechococcus sp. PCC
7002]
Length = 742
Score = 232 bits (591), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 210/357 (58%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
L KY+P F +L+GQ + +L N + + RIAP YLF GPRGTGKTS+A+I + +LNC
Sbjct: 5 PLHHKYRPQTFAQLVGQEAIATTLSNALEQRRIAPAYLFSGPRGTGKTSSARILAKSLNC 64
Query: 520 V--ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ A PCG C C +G + + +E+D + G+D +R +++ S P R+
Sbjct: 65 LNAAQPTPHPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIER-SQFAPVQC-RY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV+VIDECH+L + A LK LEEPP VVF+ TTD V +I SRCQ++ + +I
Sbjct: 123 KVYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPL 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+VA LRKI+ EN+++ +++ LIA A+G LRDAE++LDQLSLL IT V +LV
Sbjct: 183 DAMVAHLRKIAHLENIDIPLESVTLIAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM----------- 746
G V E LL+LL++ S+D +++ R L++ G +P+V++ LAS +
Sbjct: 243 GAVPERDLLQLLQVIHSNDPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTAPQR 302
Query: 747 -DIIA---GTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D+IA T+ I + + EL + + L E+E QL+ +++ W TLL L
Sbjct: 303 GDLIAVTQPTWEILCQEANQWELSTILQGQQHLKESEYQLKNTTQPRLWLEITLLGL 359
>gi|124026832|ref|YP_001015947.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
gi|123961900|gb|ABM76683.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. NATL1A]
Length = 565
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 185/296 (62%), Gaps = 4/296 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P FDEL+GQ+ + +L + RIAP Y+F GPRGTGKTS+A+IF+ +LNC+
Sbjct: 8 LHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCL 67
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ T PCG C C SG + + +E+D + G++ +R +++ + A R+K
Sbjct: 68 KSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIER--SRFAPAKARWK 125
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP++VVFI TTD V +I SRC ++ F +I
Sbjct: 126 VYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIALH 185
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D+ + L KI+ +E + + +A+ LIA ++ G LRDAE++LDQ+SLL IT + L+G
Sbjct: 186 DLESHLIKIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQLNIINLIG 245
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
+ EE+L+ L + ++ D + L++ G +P+ ++ +AS++ D++ T
Sbjct: 246 AIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVT 301
>gi|159904325|ref|YP_001551669.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
gi|159889501|gb|ABX09715.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9211]
Length = 578
Score = 231 bits (589), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 163/502 (32%), Positives = 251/502 (50%), Gaps = 67/502 (13%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P FD+L+GQ ++ +L + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 8 LHNKYRPQSFDDLVGQKVIASTLKQALLTNRIAPAYLFCGPRGTGKTSSARILARSLNCL 67
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++ PC C C +G + + +E+D + G+D +R +++ + R+K
Sbjct: 68 NVEEPTINPCCQCNLCQTISAGNALDVIEIDAASNTGVDNIRDLIE--KSKFAPVIARWK 125
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++VIDECH+L + + A LK LEEPP RVVFI TTD + +I SRCQ++ F++I+
Sbjct: 126 IYVIDECHMLSAAAFNALLKTLEEPPSRVVFILATTDPQRLLPTIISRCQRFDFSQIELN 185
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D++ L++I+ +E + +E +A++L+A + G LRDA++MLDQLSLL + IT + V +L+G
Sbjct: 186 DLINHLQEIANKEEIGIEKEAINLVARRSQGGLRDAQSMLDQLSLLPQPITVNAVLDLLG 245
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTY- 753
VSEEKLL+L D + REL+++G DPM ++ LAS L++ A Y
Sbjct: 246 EVSEEKLLDLAMALTKKDPLNLLLICRELINNGKDPMGILQGLASILRDLVLKNAAPDYP 305
Query: 754 ---TIGGRS---LTE----AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+I S L+E E ERL L +E LR SS
Sbjct: 306 DLCSISQESHQKLSEIASLVEPERLLQWQSHLKGSENNLRHSS----------------- 348
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
Q +P +T E V + Y Q P+ E N N+
Sbjct: 349 -----QPRLWLEVLLLGLLNEPFNTKLETQVNAARANISYTSQERHEPS---ENPNKNNP 400
Query: 864 HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIE 923
+L E + D H S ++ +N N+ + L E W Q +
Sbjct: 401 NL-ENKNVADKHQS---------------SLEKNVNVK-------ETNSGLSEAWEQVLA 437
Query: 924 RCHSKTLKQLLQVHGKLLSISE 945
R + + LL +L+ +SE
Sbjct: 438 RIDLPSTRMLLSQQAQLVGLSE 459
>gi|319789969|ref|YP_004151602.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
gi|317114471|gb|ADU96961.1| DNA polymerase III, subunits gamma and tau [Thermovibrio
ammonificans HB-1]
Length = 460
Score = 229 bits (585), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 125/341 (36%), Positives = 200/341 (58%), Gaps = 11/341 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
++ +KY+P FD+++GQ+ + ++L N I GR A Y+F GPRG GKT+TA+I + ALNC
Sbjct: 5 AIPRKYRPQRFDQVVGQDFITKTLKNAIKSGRFAHAYIFAGPRGVGKTTTARIVAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C + G + +EVD +G+D++R + + S A + KV
Sbjct: 65 ENPTDGEPCNSCPQCLEISKGAHPDVIEVDAATNRGIDQIRELRE--SVHYAPARGKRKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ VFI TT+ID +P +I SRCQK+LF K+
Sbjct: 123 YIIDEFHMLTKEAFNALLKTLEEPPEHAVFILATTEIDKIPPTILSRCQKFLFRKVPREL 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV L +I E + + +AL+LIA+ ++G +RDAE++LDQ ++L G R+ S +V+E +G
Sbjct: 183 IVETLERICRSEGVEFDREALELIAVASEGCIRDAESLLDQAIALGGGRVDSKVVSEFLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V++ +L LL+ A D AE + + L + G +P+ ++ QL S + + + T T
Sbjct: 243 VLTGRELRNLLQTAFKGDKAELRTQVKRLEELGYNPLFVVKQLLSWLEEELFRTTTFSE- 301
Query: 759 SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
E + A +LLSE + L+ + T L +L
Sbjct: 302 -------EEVNAAFQLLSECYRSLQNHPQPYTALLFYLFRL 335
>gi|354567395|ref|ZP_08986564.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
gi|353542667|gb|EHC12128.1| DNA polymerase III, subunits gamma and tau [Fischerella sp. JSC-11]
Length = 634
Score = 229 bits (584), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 165/505 (32%), Positives = 251/505 (49%), Gaps = 58/505 (11%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKSFAELVGQEAIATTLTNAIRASKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ +PCG C C G S + +E+D + G+D +R I++ A R+K
Sbjct: 66 KSDKPTAEPCGVCDVCQGITKGYSLDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+V+DECH+L + + A LK LEEPP+ VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVVDECHMLSTAAFNALLKTLEEPPKHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ +EN+N+ P+A+ L+A A G LRDAE++LDQLSLL +T V +LVG
Sbjct: 184 AMVQHLSTIATKENININPEAITLVAQIAQGGLRDAESLLDQLSLLSGEVTPDHVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKR-ARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
VSE LL LL A+++D E V R+++D G +P++++ LA+L D++
Sbjct: 244 SVSERDLLTLLG-AIATDNPEAVLDCTRQILDRGREPLIILQNLAALYRDLLIAKTAPSR 302
Query: 758 RSLT---------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
++L + ++ + + L AE QL+ +++ W TLL
Sbjct: 303 QNLVACTPQTWQALVSFAQQLDISTILQGQQHLRTAELQLKNTTQPRLWLEVTLL----- 357
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNS 862
L S + R Q PS+T+R V+PA P S
Sbjct: 358 ---GLLPSATIRTQ--------PSTTNR------------------VTPAVSPTPSVPPS 388
Query: 863 RHLGEVLSRI--DGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQ 920
+++I D N + + + + + E L W +
Sbjct: 389 PVSNGKVTQIQRDTGNQQNTTTQQHSNNEKSSLSPPTPPPSEQKELNSSTQESLEATWQK 448
Query: 921 CIERCHSKTLKQLLQVHGKLLSISE 945
+E K LL HG+LLSI +
Sbjct: 449 IVESLPIPA-KALLNQHGRLLSIGD 472
>gi|72383094|ref|YP_292449.1| DNA polymerase III subunit tau [Prochlorococcus marinus str.
NATL2A]
gi|72002944|gb|AAZ58746.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str.
NATL2A]
Length = 565
Score = 229 bits (584), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 127/374 (33%), Positives = 215/374 (57%), Gaps = 22/374 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P FDEL+GQ+ + +L + RIAP Y+F GPRGTGKTS+A+IF+ +LNC+
Sbjct: 8 LHHKYRPTSFDELVGQDPIKSTLKQALISDRIAPAYIFSGPRGTGKTSSARIFAKSLNCL 67
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ T PCG C C SG + + +E+D + G++ +R +++ + A R+K
Sbjct: 68 KSEKATTTPCGQCELCKGISSGNALDVIEIDAASNTGVENIRELIER--SRFAPAKARWK 125
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP++VVFI TTD V +I SRC ++ F +I
Sbjct: 126 VYVIDECHMLSTAAFNALLKTLEEPPRQVVFILATTDPQRVLPTILSRCMRFDFRRIALH 185
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
D+ + L I+ +E + + +A+ LIA ++ G LRDAE++LDQ+SLL IT + L+G
Sbjct: 186 DLESHLINIAKKEEIQINEEAISLIAKHSQGGLRDAESLLDQVSLLPPPITQLNIINLIG 245
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ EE+L+ L + ++ D + L++ G +P+ ++ +AS++ D++ T
Sbjct: 246 AIPEEELIILAKSLITKDPNSILNICNSLINKGKEPIAILQGIASILRDLVVTKVTNKPT 305
Query: 759 SL---------------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+L T + L+++ + L +E +R S++ W LL M
Sbjct: 306 NLCNISQEHSESLNFLATSSNLDQILNLQAKLKGSESNIRNSNQPNLWLEIHLL---GML 362
Query: 804 SPDLTQSGSSRRQS 817
S ++++ ++ +QS
Sbjct: 363 SDEVSKENNNIKQS 376
>gi|427737214|ref|YP_007056758.1| DNA polymerase III subunits gamma and tau [Rivularia sp. PCC 7116]
gi|427372255|gb|AFY56211.1| DNA polymerase III, subunit gamma/tau [Rivularia sp. PCC 7116]
Length = 680
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 208/356 (58%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPKTFAELVGQEAIATTLTNAIHTLKIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D+ ++PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 66 NSDKPTSQPCGKCDVCQGINKGATLDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+V+DECH+L ++ + A LK LEEPP VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVVDECHMLSTQAFNALLKTLEEPPLHVVFVLATTDPQRVLPTIISRCQRFDFRRIPMD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+A+EN+++ +A+ L+A + G LRDA+++LDQLSLL ++ V +LVG
Sbjct: 184 GMVQHLTTIAAQENIDITKEAVTLVAQVSQGGLRDAQSLLDQLSLLSGQVIPEKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
VSE+ LLELL+ +S ++ + R+++D G +P++++ LAS D++
Sbjct: 244 SVSEQGLLELLKAIISDNSEAVIDSTRQILDRGREPLIILQNLASFYRDLLIAKTAPSRN 303
Query: 759 SL---TEA------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
L T+A E+ + + L AE Q++ +++ W TLL L
Sbjct: 304 DLVACTQAMWKVLIDVAQSLEISMILQGQQHLRAAEVQIKNTTQPRLWLEVTLLGL 359
>gi|427418507|ref|ZP_18908690.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
gi|425761220|gb|EKV02073.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 7375]
Length = 724
Score = 229 bits (583), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 170/583 (29%), Positives = 288/583 (49%), Gaps = 64/583 (10%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N + + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFAQLVGQGAIATTLSNALQQNRIAPAYLFCGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ + PCG C+ C + G S + +E+D + G+D +R +++ A R K
Sbjct: 66 SSEVPTSTPCGQCQVCREITVGASLDIVEIDAASNTGVDNIRELIER--AQFAPVQCRHK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++V+DE H+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 LYVLDEVHMLSTAAFNALLKTLEEPPPHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ +E + + PDAL L+A + G LRDAE++LDQL LL IT V +LVG
Sbjct: 184 AMVQHLDYIAQQEAIAIAPDALQLVAQLSQGGLRDAESLLDQLGLLDGEITIEAVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
VSE LL L++ + D A+ + AR+LMD G +P++++ L + D++ R
Sbjct: 244 AVSERDLLALVQAVSADDGAQVLILARQLMDRGREPLMVLQSLVAFYRDLLIAKTAGERR 303
Query: 759 SLTE------AELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLL-----Q 798
L AE+ AL L L AE Q++ +++ W TL+
Sbjct: 304 DLVAITPPVWAEMVNFAQALPLPLLLSSQQHLRAAEVQVKNTTQPRLWLEITLMGLLPSA 363
Query: 799 LGSMH-------SPDLTQSGSSRRQSSRTTEEDP---SSTSREAVVYKRMSGPQYMPQ-- 846
LG ++ +P +T G + +++ + P + +S V + ++ P+
Sbjct: 364 LGQVNVATPGVTAPAVTAPGVTAPGVTQSVTQPPMPKAISSPPPVAEPPIVAQKHTPEEK 423
Query: 847 -NAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALA------------ 893
AV+P + +P + +++ G KP + + ++
Sbjct: 424 DTAVAPTPVPKPQSEPQKNVVA-----HGPEPQPKPQEDKAEKGASVVNAQPALTDTDAH 478
Query: 894 VSQNGNIVGNTI---ITCRNSEKLG---EIWAQCIERCHSKTLKQLLQVHGKLLSISEVE 947
+ Q + V N++ ++ +G +IWA+ + + K L++ KLL+ VE
Sbjct: 479 IPQPASAVNNSVEQPSAMADAPAMGSINDIWAKIVTQLQPFGTKVLMRQQAKLLTCDGVE 538
Query: 948 RVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEVRIIL 990
A V + A+ LS++ + E V + V +++
Sbjct: 539 ----ATVGIRSQPLMRMAQDRLSNVEIAFEKVFGHKIRVTMVV 577
>gi|227824621|ref|ZP_03989453.1| DNA polymerase III [Acidaminococcus sp. D21]
gi|226905120|gb|EEH91038.1| DNA polymerase III [Acidaminococcus sp. D21]
Length = 628
Score = 228 bits (582), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 107/282 (37%), Positives = 170/282 (60%), Gaps = 2/282 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L + ++P FD L+GQ + ++L N + GRI+ YLF GPRGTGKTSTA+I + ALNC
Sbjct: 5 ALYRTWRPQDFDGLVGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + G S + +E+D + +G+D +R + + + S R+KV
Sbjct: 65 EKGPTPHPCNTCDHCREITEGTSADVIEIDAASNRGIDEIRKLREQVH--FAPVSSRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H++ + + A LK LEEPP+ VVFI TT+ +P +I SRCQ++ F ++ D
Sbjct: 123 YIIDEVHMITADAFNALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTVDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I A L+K++ N+N EPDAL L+A+ ADG +RDA +LDQ S++ +T+ V +++G+
Sbjct: 183 IAAHLQKVAEGSNINAEPDALRLMAIQADGGMRDAVGLLDQCSIMANPVTAETVRQVLGI 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
+ + L+E D + +LMD G D ++++L
Sbjct: 243 AGRDTMRALVEKIGRRDLPAALDLLNQLMDDGKDVTQVLTEL 284
>gi|37521178|ref|NP_924555.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
gi|35212174|dbj|BAC89550.1| DNA polymerase III gamma and tau subunits [Gloeobacter violaceus
PCC 7421]
Length = 632
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/364 (34%), Positives = 203/364 (55%), Gaps = 19/364 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +++GQ +V +L N + GRIA YLF G RGTGKT+TA++ + ALNC+
Sbjct: 6 LHHKYRPQRFGDVVGQGPIVTTLTNALKAGRIAHAYLFTGSRGTGKTTTARLIAKALNCI 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C +C +G + + +E+D + G+D +R +++ A R KV+
Sbjct: 66 HGPTPDPCGRCEQCLAIATGSALDVIEIDAASNTGVDNIRELIER--AQFAPVQSRQKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L S + LK LEEPP V F+ TTD V ++ SRCQ++ F +I D+
Sbjct: 124 ILDEVHMLSSAAFNCLLKTLEEPPAHVTFVLATTDPQKVLPTVISRCQRFDFRRIPLTDM 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
V L +I+ +E++++E +A++L+A A G LRDAE++LDQL+LL I + + +LVG V
Sbjct: 184 VKHLEEIAWKEDIDIEHEAVELVAQIAQGGLRDAESLLDQLALLEGTIGAERIWQLVGAV 243
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
E +LL + E + D+ +++ R L+DSG +P+ ++ L D++ R L
Sbjct: 244 PERELLVIGECIQAGDSTRLIEQVRRLLDSGKEPLQVLQDLLGFYRDLLIAHTAPDRRDL 303
Query: 761 ---TEAELERLKHALKLLS------------EAEKQLRLSSERCTWFTATLLQLGSMHSP 805
T A +++ K LS +AE Q++ S++ W L LG + SP
Sbjct: 304 VAVTAASWQQMCERAKTLSIPQLLALQERLRQAEPQIKTSTQPRLWLEVGL--LGLLASP 361
Query: 806 DLTQ 809
Q
Sbjct: 362 SQNQ 365
>gi|428314446|ref|YP_007125422.1| DNA polymerase III subunits gamma and tau [Microcoleus sp. PCC
7113]
gi|428256058|gb|AFZ22016.1| DNA polymerase III, subunit gamma/tau [Microcoleus sp. PCC 7113]
Length = 519
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 139/358 (38%), Positives = 209/358 (58%), Gaps = 19/358 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L QKY+P F +L+GQ+ + +L N I RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 4 QPLHQKYRPQTFAQLVGQDAIATTLTNAIRLQRIAPAYLFTGPRGTGKTSSARILAKSLN 63
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C++TDQ PCG C C S S + +E+D + G+D +R +++ SA R
Sbjct: 64 CLSTDQPTVNPCGECEVCRAIASSSSLDVIEIDAASNTGVDNIRTLIE--SAQFTPMMCR 121
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KVF+IDE H+L ++ A LK LEEPP RVVFI TT+ + + +I SR Q++ F +I
Sbjct: 122 YKVFLIDEAHMLSTQALNALLKTLEEPPSRVVFILATTNAERLLPTIISRTQRFDFRRIP 181
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+V L+ I+ E++++ P AL+L+A A G LRDA+++LDQLSLL K+IT V EL
Sbjct: 182 LNAMVQHLKAIAELESIDITPQALNLVAQIASGGLRDAQSLLDQLSLLPKQITPETVWEL 241
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGT 752
VG VSE + L+E D + R L+D+G++P+ ++ L S L++ + + T
Sbjct: 242 VGAVSESDSIALIEALTLKDFTALLCVTRRLVDAGIEPLTILQTLTSSCRELLIALTSPT 301
Query: 753 ----YTIGGRS---LTEA----ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
T+ +S L E ++ L+H L+ L +QL + W A LL +
Sbjct: 302 RLDLVTVSPQSWEKLCELAQHWDITALQHTLQQLQVGSRQLTNTQVPVLWLEAVLLSV 359
>gi|313894455|ref|ZP_07828020.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
gi|313441279|gb|EFR59706.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 158 str. F0412]
Length = 856
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 120/323 (37%), Positives = 189/323 (58%), Gaps = 11/323 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E ++P A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS+E ++ L+ + D + + + + G D +M L + ++ G+
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMDALIQHVRALLV------GK 296
Query: 759 SLTEAELERLKHALK--LLSEAE 779
T+A+ ++ A K L++AE
Sbjct: 297 VATDADELKVYDAFKAEFLAQAE 319
>gi|428205008|ref|YP_007100634.1| DNA polymerase III subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
gi|428013127|gb|AFY91243.1| DNA polymerase III, subunits gamma and tau [Chroococcidiopsis
thermalis PCC 7203]
Length = 444
Score = 228 bits (581), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/359 (34%), Positives = 200/359 (55%), Gaps = 20/359 (5%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P +L+GQ+I+ +L N I+ G+IAP YLF GPRGTGKTSTA+I + +LNC + +
Sbjct: 10 KYRPQTLAQLVGQDIIATTLSNAINGGKIAPAYLFVGPRGTGKTSTARILAKSLNCQSAN 69
Query: 524 Q--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
Q T PCG C+ C S S + E+D + G++ +R I++ A R+KV +
Sbjct: 70 QATTTPCGECQSCRAIASSHSLDVNELDAASNSGVENIREIVER--ASFAPVESRYKVII 127
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DECH L + + LK LE+PP VVF+ TT++ VP +I SRCQ++ F +I I
Sbjct: 128 LDECHSLSQAAFNSLLKTLEQPPSNVVFVLCTTEVHKVPLTIISRCQRFDFRRIDTKTIT 187
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
L+ I+ E +++ P+AL L+A + G LRDA T+LDQLS +G +I V + G V
Sbjct: 188 EHLQAIAVAEQIDITPEALQLVAQTSHGCLRDALTLLDQLSNIGTQIADVQVYLMAGTVP 247
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLT 761
E +LL+LL+ + + + ++L++ G DP ++ + ++ D++ L
Sbjct: 248 EPELLDLLDNISTGNVTACCRIIQKLVEQGKDPSLVYLDILRILKDLLVIKTCPDATELE 307
Query: 762 EAELER---------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
E+ ++ A+KLL+ + +Q++ S + W T+L+L + P
Sbjct: 308 WQATEKWERLLSLVQHWKAISIQDAIKLLNSSSRQMKQQSSQ-LWLEVTILELAKIPLP 365
>gi|87301610|ref|ZP_01084450.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
gi|87283827|gb|EAQ75781.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 5701]
Length = 607
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 122/291 (41%), Positives = 183/291 (62%), Gaps = 4/291 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L QKY+P FD+L+GQ V +L + + + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 10 LPQKYRPQRFDQLVGQEAVASTLTSALRQNRIAPAYLFSGPRGTGKTSSARILARSLNCL 69
Query: 521 --ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A PCG C C +G + + +E+D + G+D +R +++ + R+K
Sbjct: 70 TAAGPTPDPCGSCELCRSITAGNALDVIEIDAASNTGVDNIRELIER--SRFAPVQARWK 127
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 128 VYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIPLE 187
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ LR I++EE + + P+AL ++AL A G LRDAE++LDQLSLL I ++ V +L+G
Sbjct: 188 ALEGHLRFIASEEEIGITPEALHVVALRAQGGLRDAESLLDQLSLLSAPIEATAVWDLLG 247
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V E++LLEL+ D ++ R L++ G +P ++ LASL+ D++
Sbjct: 248 AVPEQELLELVAAMGEGDPVGILETCRRLLERGREPGAVLQGLASLLRDLV 298
>gi|17158706|ref|NP_478217.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
gi|17134655|dbj|BAB77213.1| DNA polymerase III gamma and tau subunits [Nostoc sp. PCC 7120]
Length = 429
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/426 (33%), Positives = 235/426 (55%), Gaps = 44/426 (10%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L KY+P E+IGQ +V++L+N I+ +IAP YLF GP+GTGKTSTA+I + +LN
Sbjct: 3 RPLHLKYRPQILSEVIGQEHIVRTLINAIAFQKIAPAYLFSGPKGTGKTSTARIIAKSLN 62
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C ++++ TKPCG C C + S + E+D + G++ +R ++ + R
Sbjct: 63 CQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELIS--TTQFAPVESR 120
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+F+IDECH L S++W A LK +E PP+ VVFIF TT++ VP +I SRCQK+ F ++
Sbjct: 121 FKIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVP 180
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
+ + L KIS +E++N+ P A+ +A G LRD+ +LDQL+LLG + IT + V E
Sbjct: 181 VSLVASYLEKISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITYNWVWE 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
L G + E LL + E + + + ++ ++SG P + + L + + D++
Sbjct: 241 LSGTIPEYDLLTVCENIIKGEITGNLGILQDWIESGKQPTAIHTSLVNFLKDLLVCKTNP 300
Query: 756 GGRSLTEAE---------------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
GR LT+ E ++++++A+ +L A + L + W ATL+++
Sbjct: 301 NGRHLTQLEQDTWEELVSISQLWNIDQIRNAIAILM-ARQSLMRDEDAHLWLEATLIEIV 359
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE---- 856
T GS + Q + + T+++A+ + G + +P ++ A L+E
Sbjct: 360 P------TNKGSHQSQPWKDWK-----TAQDAINW----GKEQLPH--LTQAQLQEHWQK 402
Query: 857 --PVNG 860
P+NG
Sbjct: 403 LTPING 408
>gi|75812737|ref|YP_320354.1| ATPase [Anabaena variabilis ATCC 29413]
gi|75705493|gb|ABA25165.1| ATPase [Anabaena variabilis ATCC 29413]
Length = 429
Score = 228 bits (580), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/426 (33%), Positives = 236/426 (55%), Gaps = 44/426 (10%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P E+IGQ +V++L+N I+ +IAP YLF GP+GTGKTSTA+I + +LN
Sbjct: 3 QPLHLKYRPQTLSEVIGQEHIVRTLINAIALQKIAPAYLFSGPKGTGKTSTARIIAKSLN 62
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C ++++ TKPCG C C + S + E+D + G++ +R ++ + R
Sbjct: 63 CQSSNEPTTKPCGECNSCKGITASSSVDVTELDAASNSGVELIRELISTIQ--FAPVEGR 120
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+F+IDECH L S++W A LK +E PP+ VVFIF TT++ VP +I SRCQK+ F ++
Sbjct: 121 FKIFIIDECHALSSQSWQALLKTIESPPRHVVFIFCTTELHKVPETIVSRCQKFDFKRVP 180
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
+ + L +IS +E++N+ P A+ +A G LRD+ +LDQL+LLG + ITS+ V E
Sbjct: 181 VSLVASYLEQISHQESINIAPSAVTAVAKANKGHLRDSLKLLDQLTLLGEEEITSNWVWE 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
L G +SE LL E + + + ++ ++SG P + + L S + D++
Sbjct: 241 LSGTISEYDLLTACENIIKGEITGNLGILQDWIESGKQPTAIHTSLVSFLKDLLVCKTNP 300
Query: 756 GGRSLTEAE---------------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
GR LT+ E ++++++A+ +L A + L + W ATL+++
Sbjct: 301 NGRHLTQLEEDTWEKLVSISQLWNIDQIRNAIAILM-ARQNLMRDEDAHLWLEATLIEIV 359
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE---- 856
T GS + Q + + T+++A+ + G + +P ++ A L+E
Sbjct: 360 P------TNKGSHQSQPWKDWK-----TAQDAINW----GKEQLPH--LTQAQLQEHWQK 402
Query: 857 --PVNG 860
P+NG
Sbjct: 403 LTPING 408
>gi|238018439|ref|ZP_04598865.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
gi|237864910|gb|EEP66200.1| hypothetical protein VEIDISOL_00266 [Veillonella dispar ATCC 17748]
Length = 922
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/293 (38%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E ++P A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFGLDPAAAQLIAVHADGGLRDALSILDQCAGMATGTITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKLLSYIHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|148238398|ref|YP_001223785.1| DNA polymerase III subunit gamma/tau [Synechococcus sp. WH 7803]
gi|147846937|emb|CAK22488.1| DNA polymerase III gamma/tau subunit [Synechococcus sp. WH 7803]
Length = 621
Score = 227 bits (579), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 180/293 (61%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P D+L+GQ + +L + + GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ ++ +PCG+C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E + ++P+AL ++A A G LRDAE++LDQLSLL I + V +L
Sbjct: 184 LEALERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQAEAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L+ S + ++ R L+D G D ++ LA ++ D++
Sbjct: 244 LGAVPEQELLALVAAMRSGEPVALLEATRNLLDRGRDAGSVLQGLAGILRDLV 296
>gi|88809301|ref|ZP_01124809.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
gi|88786520|gb|EAR17679.1| DNA polymerase, gamma and tau subunits [Synechococcus sp. WH 7805]
Length = 587
Score = 227 bits (578), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 180/293 (61%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P D+L+GQ + +L + + GRIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRLDQLVGQEAIAATLGHALRSGRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ ++ +PCG+C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNSEGPTPEPCGHCELCTTIAAGTALDVIEIDAASNTGVDNIRDLIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP +VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPQVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ +E + ++P+AL ++A A G LRDAE++LDQLSLL I + V +L
Sbjct: 184 LEALERHLTWIAEQETIPIQPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIQADAVWDL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+G V E++LL L+ S + ++ R L+D G D ++ LA ++ D++
Sbjct: 244 LGAVPEQELLALVTAMSSGEPVALLEATRTLLDRGRDAGSVLQGLAGILRDLV 296
>gi|169830250|ref|YP_001716232.1| DNA polymerase III subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
gi|169637094|gb|ACA58600.1| DNA polymerase III, subunits gamma and tau [Candidatus Desulforudis
audaxviator MP104C]
Length = 447
Score = 227 bits (578), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/408 (32%), Positives = 223/408 (54%), Gaps = 12/408 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F E++GQ+ VV++L N + R+A YLF GPRGTGKT+ AK+ + A+N
Sbjct: 4 QTLYRTWRPQRFGEIVGQDHVVRTLQNAVRAERVAHAYLFCGPRGTGKTTAAKVLAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C D +PCG C C +G + + +E+D + +G+D VR + + + A+ RFK
Sbjct: 64 CTERDGAEPCGECASCVSIGTGSAVDVLEIDAASNRGVDEVRELRERVK--FHPAAGRFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L ++ + A LK LEEPP V+F+ TT+ VP +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLTNEAFNALLKTLEEPPPHVIFVLATTEPHKVPLTIISRCQRFDFRRIGRP 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELV 697
D+V+RL +++A+ L VE L LIA ADGSLRDA +LDQ + L G R+T + ++ ++
Sbjct: 182 DLVSRLEEVAAQAGLAVESGVLALIARVADGSLRDALGILDQAAALGGNRVTLADLHSIL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V+ E L L+ + +T + +E+ G + ++ +L + ++ G + GG
Sbjct: 242 GTVTGEVLERLVGHLAAGETGAALLVLQEVEAQGKELRIIARELTDYLRGLLYGAFGAGG 301
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQS 817
+ ++ + ERL L L + AE+++R ++ + +++ G L+ G R
Sbjct: 302 ATRSDLDRERLIEFLALFARAEQEMRFATRQILPLELAVVRAGR----SLSGVGDGPRLP 357
Query: 818 SRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHL 865
+ E + R P P A + EPV SR L
Sbjct: 358 EPEKNLELERVWEEVLAEFRRRKPPVAPWLARA-----EPVAAGSRKL 400
>gi|124021779|ref|YP_001016086.1| DNA polymerase III subunits gamma/tau [Prochlorococcus marinus str.
MIT 9303]
gi|123962065|gb|ABM76821.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9303]
Length = 604
Score = 226 bits (577), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 118/296 (39%), Positives = 180/296 (60%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P FD L+GQ+ + +L + + RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHHKYRPQRFDALVGQDAIAATLSHALRSSRIAPAYLFSGPRGTGKTSSARILARSLN 65
Query: 519 CVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ DQ +PCG C C +G + + +E+D + G+D +R +++ + R
Sbjct: 66 CLNCDQPTPEPCGNCELCKSIAAGTALDVIEIDAASNTGVDNIRELIER--SRFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+V+DECH+L + + A LK LEEPP RVVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 WKVYVVDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ L I+ E + + P+AL ++A A G LRDAE++LDQLSLL I + V EL
Sbjct: 184 LEALEKHLEMIATREAIPINPEALHVVAQRAQGGLRDAESLLDQLSLLPGPIKAEAVWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G V E++LL+L +D ++ R L++ G DP L+ LA+++ D++ T
Sbjct: 244 MGAVPEQELLKLAAALAQADPLCLLETCRNLLNRGRDPGALLQGLAAVLRDLVLMT 299
>gi|383753284|ref|YP_005432187.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
gi|381365336|dbj|BAL82164.1| putative DNA polymerase III subunit gamma/tau [Selenomonas
ruminantium subsp. lactilytica TAM6421]
Length = 572
Score = 225 bits (574), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 115/284 (40%), Positives = 173/284 (60%), Gaps = 3/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +L+GQ + ++L N I+ GRI YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRKWRPKTFADLVGQEHISRTLSNAINTGRIGHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG CR C G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 EQGPTPEPCGKCRACQKINDGSSMDVFEIDAASNRGIDEIRDLRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ VP +IQSRCQ+Y F +I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++AE L VEP+ALD+IA+ ADG LRDA ++LDQ S L +T++ V + +G
Sbjct: 183 IRGRLETVTAEMGLQVEPEALDMIAIQADGGLRDALSLLDQCSALADGELTAARVRQTLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
++ E + L E + + + EL+ G + ++++L+
Sbjct: 243 LIGHESIYRLTEAIYAHKSQTALAVLAELLRDGKELKQVLTELS 286
>gi|33241267|ref|NP_876209.1| DNA polymerase III subunit gamma/tau [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
gi|33238797|gb|AAQ00862.1| DNA polymerase III gamma/tau subunit [Prochlorococcus marinus
subsp. marinus str. CCMP1375]
Length = 559
Score = 225 bits (573), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 122/344 (35%), Positives = 199/344 (57%), Gaps = 19/344 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L QKY+P FD+L+GQ+ +V +L + RIAP YLF GPRGTGKTS+A+I + +LN
Sbjct: 6 QPLHQKYRPKRFDDLVGQDSIVATLKQALISNRIAPAYLFCGPRGTGKTSSARILARSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C +++ PC C C + G + + +E+D + G+D +R +++ + R
Sbjct: 66 CQQSEKPTIAPCCQCNLCKEIGKGTALDIIEIDAASNTGVDNIRELIER--SQFAPVQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + + A LK LEEPP + VF+ TTD + ++I SRCQ++ F +I
Sbjct: 124 WKVYVIDECHMLSTAAFNALLKTLEEPPSQTVFVLATTDPQRLLQTILSRCQRFDFRRIP 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+ + L I+++E + ++ ++++LIA ++G LRDAE++LDQLSLL I + EL
Sbjct: 184 ITSLTSHLTTIASKEKIEIDQESINLIAQRSEGGLRDAESLLDQLSLLKPPINLQSIWEL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G V E L+ L +S D +K R+L D+G +P+ ++ L + + D++
Sbjct: 244 LGEVPENDLIILTSSLISQDPISLLKTCRKLFDNGKEPISILQGLTATLRDLVLIKSLPD 303
Query: 757 GRSL---------------TEAELERLKHALKLLSEAEKQLRLS 785
SL +E EL+R+ + K L +E Q+R S
Sbjct: 304 QPSLCSLSKQSQETLTKISSELELDRILYWQKYLKGSESQIRFS 347
>gi|427413412|ref|ZP_18903603.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
gi|425715405|gb|EKU78393.1| DNA polymerase III, subunit gamma and tau [Veillonella ratti
ACS-216-V-Col6b]
Length = 800
Score = 224 bits (572), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/275 (39%), Positives = 170/275 (61%), Gaps = 3/275 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +++GQ V ++L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPQTFTDVVGQKQVSETLMRAIREDKVAHAYLFSGPRGTGKTSVAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C ++G+S + +E+D + +G+D +R L+ LP R K+
Sbjct: 65 EKGPTDHPCNECTSCKQILNGQSMDVLEIDAASNRGIDEIRS-LRESVKFLPVEG-RKKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP ++FIF TT++D +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPPHIMFIFATTEVDKLPVTILSRCQRYTFRRITAED 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I L ++ E N+ + PDA LIA++ADG LRDA ++LDQ S + K IT+ V ++G
Sbjct: 183 IAEHLLHVATESNIQLAPDAAQLIAIHADGGLRDALSILDQCSGMTKDMITAKTVETMIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+V +E ++E L+ D A + +++ + G D
Sbjct: 243 LVGKEWIMEFLDYLRRGDGAAVLVASKQALSEGRD 277
>gi|307591376|ref|YP_003900175.1| DNA polymerase III subunits gamma and tau [Cyanothece sp. PCC 7822]
gi|306986230|gb|ADN18109.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7822]
Length = 477
Score = 224 bits (571), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/280 (41%), Positives = 168/280 (60%), Gaps = 5/280 (1%)
Query: 464 KYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATD 523
KY+P +L+GQ + +L N I+ GRIAP YLF GPRGTGKTSTA+I + +LNC++ D
Sbjct: 9 KYRPQTLADLVGQQPIATTLTNAITTGRIAPAYLFSGPRGTGKTSTARILAKSLNCLSED 68
Query: 524 Q--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
PCG C C S S + +E+D + ++++R +++ S +P +KV++
Sbjct: 69 NPTVTPCGQCDSCGAIASSNSLDVIEIDAASNNSVEQIRDLIEK-SQFVPHN--LYKVWI 125
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DECH L A LK LE PP+RVVFI TT+ + + +I SRCQ++ F + D I+
Sbjct: 126 LDECHALSHFAIQALLKTLENPPERVVFILCTTEPERLGDTIISRCQRFNFRRESDSVII 185
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
L I+ EN+ ++P L LIA + G LRDA+ +L+QLSLL +T V EL G V
Sbjct: 186 EHLAAIAQRENITIDPHVLRLIAQHCQGGLRDAQCLLEQLSLLSNTLTPEQVYELTGSVP 245
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
E+ LL L DT + +KR REL + G+DP+V+ L
Sbjct: 246 EQDLLLLFNAIQEEDTEQVIKRTRELYEVGLDPLVIAQNL 285
>gi|427725275|ref|YP_007072552.1| DNA polymerase III subunits gamma and tau [Leptolyngbya sp. PCC
7376]
gi|427356995|gb|AFY39718.1| DNA polymerase III, subunits gamma and tau [Leptolyngbya sp. PCC
7376]
Length = 803
Score = 224 bits (571), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N + + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQMFSELVGQEAIATTLSNALEKKRIAPAYLFSGPRGTGKTSSARILAKSLNCL 65
Query: 521 --ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A PCG C C +G + + +E+D + G+D +R +++ S P R+K
Sbjct: 66 NAANPTPSPCGECEVCRAIANGSALDVIEIDAASNTGVDNIRELIER-SQFAPVQC-RYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + A LK LEEPP VVF+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYVIDECHMLSVAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDYRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V LRKI+ EN+ + +++ L+A A+G LRDAE++LDQLSLL IT V +LVG
Sbjct: 184 AMVGHLRKIARNENIEIPLESVILVAQIANGGLRDAESLLDQLSLLSGEITPDKVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM------------ 746
V E LL L+++ S++ +++ R L++ G +P+V++ LAS +
Sbjct: 244 AVPERDLLGLIQVVRSNNPEAVIQQCRSLLNRGREPLVVLQNLASFYLNLLIAKTAPQRG 303
Query: 747 DIIAGTYTIGGRSLTEAELERLKHALK---LLSEAEKQLRLSSERCTWFTATLLQL 799
D+IA T EA+ + LK L E+E QL+ +++ W TLL L
Sbjct: 304 DLIAVTQPTWQALCQEAQGWDVALILKGQQHLKESEYQLKNTTQPRLWLEITLLGL 359
>gi|115439733|ref|NP_001044146.1| Os01g0730900 [Oryza sativa Japonica Group]
gi|57899145|dbj|BAD87007.1| putative DNA polymerase III subunit gamma/tau [Oryza sativa
Japonica Group]
gi|113533677|dbj|BAF06060.1| Os01g0730900 [Oryza sativa Japonica Group]
Length = 622
Score = 224 bits (570), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/250 (46%), Positives = 163/250 (65%), Gaps = 3/250 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
RSL+QK+ P F +++GQ++VVQ+L N + R +I VY+F GP GTGKTS A++F+ ALN
Sbjct: 350 RSLTQKFAPKTFKDVVGQSLVVQALSNAVLRRKIGLVYVFYGPHGTGKTSCARVFAKALN 409
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C C GKSR+ ME+ +D + +L ++ L A ++
Sbjct: 410 CHSPEHPRPCDSCTSCIAHNLGKSRSVMEIGPVGNIDMDGIVDVLDNVM--LSPAPSHYR 467
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
VF+ D+C LP+ TW K ++ P+RVVFI ++ ++D +P I SRCQK+ F K+K+
Sbjct: 468 VFIFDDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLD-LPHIILSRCQKFFFPKLKEC 526
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DIV L+ IS E+L+V+ DAL LIA +DGSLRDAE LDQLSLLG+RI+ SLV ELV
Sbjct: 527 DIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSLVQELVR 586
Query: 699 VVSEEKLLEL 708
+S LL
Sbjct: 587 YLSSLILLPF 596
>gi|269798692|ref|YP_003312592.1| DNA polymerase III subunits gamma/tau [Veillonella parvula DSM
2008]
gi|269095321|gb|ACZ25312.1| DNA polymerase III, subunits gamma and tau [Veillonella parvula DSM
2008]
Length = 895
Score = 224 bits (570), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EHGPTDHPCNECSACRSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E +++ A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFDLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|301058434|ref|ZP_07199455.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
gi|300447490|gb|EFK11234.1| DNA polymerase III, subunit gamma and tau [delta proteobacterium
NaphS2]
Length = 564
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 130/357 (36%), Positives = 202/357 (56%), Gaps = 17/357 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F+++IGQ + Q+LVN I GR+A Y+F GPRG GKTS A+IF+ A+NC
Sbjct: 6 LARKWRPQVFEDVIGQEHITQTLVNAIKTGRLAHAYIFGGPRGVGKTSVARIFAKAINCA 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ PC CR C + G S + E+DG + +G+D +R L+ + +PSAS R++++
Sbjct: 66 EGEPGIPCNRCRSCREITEGNSVDVQEIDGASNRGIDEIRE-LRESARYMPSAS-RYRIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
VIDE H+L + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 VIDEVHMLTLPAFNALLKTLEEPPPHVKFIFATTESHKVPITILSRCQRFDFKRIALQKI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
VA L KIS E + + AL +IA A+GS+RDAE++LDQ +S G +++ V E++G+
Sbjct: 184 VAYLEKISGHEGVAIGTTALAMIAREAEGSMRDAESLLDQVVSFAGDKVSDDQVPEILGI 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPM----VLMSQLASLIMDIIAGTYTI 755
+ + E + + ++ G D LM+Q +L++ +IA +
Sbjct: 244 IDRGLIFESSSAIIEGAAPRCLAVVEKVYSRGYDIKEFYRALMAQFRNLLVSLIAPEENL 303
Query: 756 GGRSLT-------EAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
S + +AE+ E+L+ L L E LR S+ ATL++L ++
Sbjct: 304 IDMSESDRKEIRRQAEMAGTEKLQVVLNFLISREDALRFSTYPRLVLEATLIKLCTL 360
>gi|401679099|ref|ZP_10811032.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
gi|400219681|gb|EJO50543.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. ACP1]
Length = 808
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 172/283 (60%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D +R + + S R KV
Sbjct: 65 EHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+ ++ +E +E +A LIA++ADG LRDA ++LDQ + + IT ++V EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAIVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
+VS++ +++ L D +K + + G D +M L
Sbjct: 243 LVSKDWIIKFLSALHDGDGPAVLKYIQNALSEGRDGAQIMEAL 285
>gi|443313263|ref|ZP_21042875.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
gi|442776668|gb|ELR86949.1| DNA polymerase III, subunit gamma/tau [Synechocystis sp. PCC 7509]
Length = 629
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 209/369 (56%), Gaps = 24/369 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N I + +IAP YLF G RGTGKTS+A+I S +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAIATTLTNAIRKSQIAPAYLFTGSRGTGKTSSARILSKSLNCL 65
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
++ KPCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 66 SSPAPIEKPCGKCDACQGITKGIALDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+ IDECH+L S + LK LEEPP+ VVFI TTD + V +I SRCQ++ F +I
Sbjct: 124 VYAIDECHMLSSAAFNCLLKTLEEPPKSVVFILATTDPERVLPTIISRCQRFDFRRIPMQ 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
I LR I+ EE++++ DAL L+A A G LRDAE++LDQLSLL IT V +L G
Sbjct: 184 AIADHLRYIATEEDISISSDALQLVAGLAQGGLRDAESLLDQLSLLSGEITIERVWDLAG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
VSE+ LELL ++ AR++MD G +P++++ LAS D++ T R
Sbjct: 244 SVSEKDCLELLNAIALCHPDTILESARKIMDRGREPLIVLQNLASFYRDLLIAK-TAPTR 302
Query: 759 ----SLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQL--- 799
SLT A E L+ + + L+++E Q++ S++ W TLL L
Sbjct: 303 NDLVSLTSATWESLRKLANNVEIATIVNGQQHLAKSEIQIKNSTQPRLWLEVTLLGLLAT 362
Query: 800 GSMHSPDLT 808
+ +P +T
Sbjct: 363 NTAQTPTVT 371
>gi|417000436|ref|ZP_11940652.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
gi|333976138|gb|EGL77010.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula
ACS-068-V-Sch12]
Length = 901
Score = 223 bits (569), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E ++ A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|282849744|ref|ZP_06259128.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
gi|282580681|gb|EFB86080.1| DNA polymerase III, subunit gamma and tau [Veillonella parvula ATCC
17745]
Length = 902
Score = 223 bits (569), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 175/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EHGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E +++ A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFSLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|294794411|ref|ZP_06759547.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
gi|294454741|gb|EFG23114.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 3_1_44]
Length = 892
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 112/293 (38%), Positives = 174/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D VR + + S R KV
Sbjct: 65 EQGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEVRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E ++ A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|303231330|ref|ZP_07318065.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
gi|302514010|gb|EFL56017.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-049-V-Sch6]
Length = 763
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 173/283 (61%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D +R + + S R KV
Sbjct: 65 EHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+ ++ +E +E +A LIA++ADG LRDA ++LDQ + + IT ++V EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
+VS++ +++ L + D +K + + G D +M L
Sbjct: 243 LVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEAL 285
>gi|123969399|ref|YP_001010257.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
gi|123199509|gb|ABM71150.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. AS9601]
Length = 584
Score = 223 bits (568), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 180/296 (60%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C A DQ PC C C G + + +E+D + G++ +R I++ A R
Sbjct: 66 CQAFDQPTITPCCKCDLCRQITEGSALDIIEIDAASNTGVENIREIIER--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP RVVFI TT+ + V +I+SRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIKSRCQKFDFRRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
DI L +IS +E++ E AL +IA ++G +RDA+++L+QL+LL + IT + + L
Sbjct: 184 PSDIFQHLSEISEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINGIQNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE +L L++ + ++ + +L DSG +P+ ++ L ++ D++ T
Sbjct: 244 LGEVSESELTNLIKSLVENNPESLIDTCNKLYDSGNEPLQIIIGLLNITRDLLLHT 299
>gi|294792632|ref|ZP_06757779.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
gi|294456531|gb|EFG24894.1| DNA polymerase III, gamma and tau subunits [Veillonella sp. 6_1_27]
Length = 901
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 174/293 (59%), Gaps = 3/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D +R + + S R KV
Sbjct: 65 EYGPTDHPCNECSACKSILSGQSMDVLEIDAASNRGIDEIRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTTEAWNALLKTIEEPPAHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ +E ++ A LIA++ADG LRDA ++LDQ + + IT +V EL+G
Sbjct: 183 IAQRLSYVAEKEGFGLDSAAAQLIAVHADGGLRDALSILDQCAGMATGSITPQVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+VS+E ++ L+ + D + + + + G D +M L + ++ G
Sbjct: 243 LVSKEWIIHFLDALRNGDGPKVLSYVHDALAEGRDATQIMEALIQHVRALLVG 295
>gi|303228652|ref|ZP_07315477.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429759877|ref|ZP_19292372.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
gi|302516632|gb|EFL58549.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica
ACS-134-V-Col7a]
gi|429179097|gb|EKY20359.1| DNA polymerase III, subunit gamma and tau [Veillonella atypica KON]
Length = 804
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 173/283 (61%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ+ V +L+ I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPQTFTDVVGQHQVSDTLMRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +SG+S + +E+D + +G+D +R + + S R KV
Sbjct: 65 EHGPTDHPCNECSVCKSILSGQSMDVLEIDAASNRGIDEIRALRE--SVKFMPVEGRKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+I+ +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPDHVMFIFATTEIEKLPVTIVSRCQRYTFRRITSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+ ++ +E +E +A LIA++ADG LRDA ++LDQ + + IT ++V EL+G
Sbjct: 183 IAQRLQYVADKEGFALEDNAARLIAVHADGGLRDALSILDQCVGMASGEITPAVVEELIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
+VS++ +++ L + D +K + + G D +M L
Sbjct: 243 LVSKDWIIKFLSALHNGDGPAVLKYIQNALSEGRDGAQIMEAL 285
>gi|296120960|ref|YP_003628738.1| DNA polymerase III subunits gamma and tau [Planctomyces limnophilus
DSM 3776]
gi|296013300|gb|ADG66539.1| DNA polymerase III, subunits gamma and tau [Planctomyces
limnophilus DSM 3776]
Length = 682
Score = 223 bits (567), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 120/353 (33%), Positives = 206/353 (58%), Gaps = 22/353 (6%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN L+++++P F E++GQ+ + Q+L N I GR+A YLF G RG GKTS A+IF+
Sbjct: 3 VENYTVLARRFRPQTFSEVVGQDRIAQTLRNAILEGRVAHAYLFTGARGVGKTSMARIFA 62
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
ALNC + PC C C +G+ + E+DG + +G+D +R + +++ + S
Sbjct: 63 KALNCPNAVEAVPCNTCEICRAVSAGQDVDVSEIDGASNRGIDDIRTLRANVN--VKSMR 120
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L + + A LK LEEPPQ V FIF TT+ + +P +I SRCQ++ F
Sbjct: 121 TRYKVYIIDEVHMLTKEAFNALLKTLEEPPQGVKFIFCTTEPNKLPDTILSRCQRFDFGT 180
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLV 693
+ I RLR+I+ E V+ +A++L++ A+GS+RD++++ DQ+ G + +T + V
Sbjct: 181 VNIESIGERLRQIANTEGFQVDDEAIELVSRRANGSMRDSQSLFDQVLAFGHQHVTVADV 240
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
+ L+G S+++++EL++ + A ++ + + GV L QL S + D++
Sbjct: 241 HRLLGTASDDRVIELVQALIDRHAARALEALDQAILDGVQLDALTDQLISYLRDLMVTAA 300
Query: 754 TIGGRSL------------TEAE---LERLKHALKLLSEAEKQLRLSSERCTW 791
+ G +L T+AE L+ + AL++L+EA ++ R TW
Sbjct: 301 GVKGIALLGATESSRSRVETQAEAWGLKTISAALQILAEA----KIKMARATW 349
>gi|413946123|gb|AFW78772.1| hypothetical protein ZEAMMB73_060572 [Zea mays]
Length = 555
Score = 223 bits (567), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 209/392 (53%), Gaps = 39/392 (9%)
Query: 319 CGIPCYWSKRTPKHRG-----VCGSCCSPSLSD-----TLRRKGSSILCGSQTMYHGRRR 368
CGIP WS+ HRG + G S LSD RR + S +G R
Sbjct: 186 CGIPWNWSRI--HHRGKSILDMAGRSLSCGLSDPKSTSAARRSEPATSAASCGHVNGSRS 243
Query: 369 SSSVSNKRRMASRSAQGV--LPLLANNGDGRAGSSIGTGRSDDELSTNF-GELDLEALSR 425
R+ S S+ LPLL + G +S++F GEL +
Sbjct: 244 HPHFPVTARLTSSSSSDSDSLPLLVDGVRNAVGG----------ISSSFSGELGI----- 288
Query: 426 LDGRRWSSSCRSQDGLEIVALNGEEEEGVLE-NIRSLSQKYKPIFFDELIGQNIVVQSLV 484
+S S L A +G++ G RS +QKY P F +++GQ++VVQ+L
Sbjct: 289 -----FSKSSELDSDLASEARSGQKSRGSHRARHRSFTQKYAPRTFKDVVGQSLVVQALS 343
Query: 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544
N I + +I VY+F GP GTGKTS A++F+ ALNC + + +PC C C GKSR+
Sbjct: 344 NAILKKKIGLVYVFYGPHGTGKTSCARVFAKALNCHSPEHPRPCDSCASCIAHNLGKSRS 403
Query: 545 FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPP 604
+E+ LD + IL ++ L + +VF+ID+C+ LP TW K +E P
Sbjct: 404 LLEIGPVGNIDLDGIVDILDNVM--LSPVKSQHRVFIIDDCNTLPPDTWSVISKVVERAP 461
Query: 605 QRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIA 664
+RVVFI I+ ++D +P I SRCQK+ F K+K+ DI++ L+ IS E L+V+ DAL LIA
Sbjct: 462 RRVVFILISPNLD-LPHIIVSRCQKFFFPKLKECDIISTLQWISTSEGLDVDRDALKLIA 520
Query: 665 LNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
+DGSLRDAE LDQLSLLG+ I+ SLV EL
Sbjct: 521 SRSDGSLRDAEMTLDQLSLLGQTISMSLVQEL 552
>gi|78780135|ref|YP_398247.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
gi|78713634|gb|ABB50811.1| DNA polymerase III, tau subunit [Prochlorococcus marinus str. MIT
9312]
Length = 579
Score = 222 bits (566), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 181/296 (61%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQN + +L + +I+P YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPSNLDELVGQNFISITLKQALLTKKISPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C A ++ PCG C C G + + +E+D + G++ +R I++ A R
Sbjct: 66 CQAFEEPTIHPCGKCDLCRQITDGNALDIIEIDAASNTGVENIREIIER--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP RVVFI TT+ + V +IQSRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLNTIQSRCQKFDFRRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
DI L +I+ +E++ E AL++IA ++G +RDA+++L+QL+LL + IT + + L
Sbjct: 184 PSDIFQHLSEIAEKESIKYEVQALNIIAKRSNGGMRDAQSLLEQLNLLPEGITINNIKNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE +L L++ + ++ + +L D G +P ++ L ++ D++ T
Sbjct: 244 LGEVSEIELTNLIKSLIENNPESLIITCNKLYDDGNEPYQIIIGLLNITRDLLLHT 299
>gi|402833160|ref|ZP_10881780.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
gi|402281152|gb|EJU29843.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. CM52]
Length = 686
Score = 222 bits (566), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 173/283 (61%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ V ++L + IS GRIA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 39 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 98
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C+ C G + + E+D + +G+D +R + + + A R+KV
Sbjct: 99 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVK--FTPAEGRYKV 156
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ VP +IQSRCQ++ F +I +
Sbjct: 157 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEE 216
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVG 698
I ARL ++ E + E +AL LIA ADG +RDA ++LDQ SL G +T++ V E +G
Sbjct: 217 IEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLG 276
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
++ E + L + E ++ EL+ G DPM L+++L
Sbjct: 277 LIGHEPIYRLTKSIGERAKGEVLETIAELLALGKDPMQLLAEL 319
>gi|411118937|ref|ZP_11391317.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
gi|410710800|gb|EKQ68307.1| DNA polymerase III, subunit gamma/tau [Oscillatoriales
cyanobacterium JSC-12]
Length = 653
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 151/403 (37%), Positives = 221/403 (54%), Gaps = 27/403 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F EL+GQ + +L N I + RIAP YLF G RGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFAELVGQEAIAATLTNAIQQQRIAPAYLFTGARGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ + PCG C C G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 KSKKPTETPCGVCEVCQAIARGSALDVIEIDAASNTGVDNIRELIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+RVVF+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYIIDEVHMLSTAAFNALLKTLEEPPERVVFVLATTDPQRVLPTIISRCQRFDYRRIPLD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V LR I+ +E + + A+ L+A A G LRDAE++LDQLSLL +I V +LVG
Sbjct: 184 AMVTHLRHIADQETIPITDGAITLVAQIAQGGLRDAESLLDQLSLLSGKIDIEHVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAET-VKRARELMDSGVDPMVLMSQLASLIMD-IIAGTYT-- 754
V E LL LL A++ DT ET + R LMD G +P++++ LAS D +IA T
Sbjct: 244 SVPERDLLGLLT-AIAQDTPETLLDSTRRLMDRGREPLIVLQNLASFYRDLLIAKTAPTR 302
Query: 755 ---IGGRSLTEAELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLL-QLGS 801
+ S T +L L L L L AE QL+ +++ W TL+ L S
Sbjct: 303 NDLVALTSPTWQQLCDLAQTLDLSVILAGQQHLRAAEVQLKHTTQPQLWLEVTLMGLLPS 362
Query: 802 MHSPDLTQSGSSRRQSSRTTEED---PSSTSREAVVYKRMSGP 841
SP Q +SR+ + + ++D P SR + + P
Sbjct: 363 AISPQ--QPAASRQPPAASRQQDCHLPILDSRSEALLDNLQSP 403
>gi|330837881|ref|YP_004412461.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
gi|329745645|gb|AEB99001.1| DNA polymerase III, subunits gamma and tau [Selenomonas sputigena
ATCC 35185]
Length = 664
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 173/283 (61%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ V ++L + IS GRIA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C+ C G + + E+D + +G+D +R + + + A R+KV
Sbjct: 65 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVK--FTPAEGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ VP +IQSRCQ++ F +I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVG 698
I ARL ++ E + E +AL LIA ADG +RDA ++LDQ SL G +T++ V E +G
Sbjct: 183 IEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
++ E + L + E ++ EL+ G DPM L+++L
Sbjct: 243 LIGHEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAEL 285
>gi|255658584|ref|ZP_05403993.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
gi|260849391|gb|EEX69398.1| DNA polymerase III, gamma and tau subunit [Mitsuokella multacida
DSM 20544]
Length = 631
Score = 222 bits (565), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 116/298 (38%), Positives = 182/298 (61%), Gaps = 7/298 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +L+GQ + ++L N I+ G I YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRKWRPQTFKDLVGQEHISRTLANAITSGHIGHAYLFAGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C +C G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 EHGPTPEPCGQCEQCRKIADGSSMDVFEIDAASNRGIDEIRDLRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ VP +IQSRCQ+Y F +I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKVPPTIQSRCQRYDFKRITVEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I +RLR I+AE + E +AL +IA+ ADG +RDA ++LDQ + L + IT+ V +++G
Sbjct: 183 IESRLRYITAEMKMEAEDEALAMIAIQADGGMRDALSILDQCAALAEGTITAERVRQILG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGT 752
+V + + ++ + + + E ++ EL+ G D ++S+L+ SL++ AGT
Sbjct: 243 LVGHDWIYKMTKALAARNVQEALQILAELLRDGKDLKQILSELSLHLRSLMIFQAAGT 300
>gi|260887501|ref|ZP_05898764.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
gi|260862788|gb|EEX77288.1| DNA polymerase III, gamma and tau subunit [Selenomonas sputigena
ATCC 35185]
Length = 691
Score = 221 bits (564), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 115/283 (40%), Positives = 173/283 (61%), Gaps = 3/283 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ V ++L + IS GRIA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 32 ALYRQWRPGSFKDLVGQTAVSRTLSHAISAGRIAHAYLFSGPRGTGKTSTAKILAKSLNC 91
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C+ C G + + E+D + +G+D +R + + + A R+KV
Sbjct: 92 EKGPTPEPCGVCKNCTKIADGTALDVFEIDAASNRGIDEMRDLREKVK--FTPAEGRYKV 149
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ VP +IQSRCQ++ F +I +
Sbjct: 150 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEPHKVPATIQSRCQRFDFRRITVEE 209
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVG 698
I ARL ++ E + E +AL LIA ADG +RDA ++LDQ SL G +T++ V E +G
Sbjct: 210 IEARLAYVAQEMKIPCEKEALRLIARQADGGMRDALSLLDQCASLDGDTLTAACVEENLG 269
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
++ E + L + E ++ EL+ G DPM L+++L
Sbjct: 270 LIGHEPIYRLTKAIGERAKGEVLETIAELLALGKDPMQLLAEL 312
>gi|196047917|ref|ZP_03115095.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
gi|196021173|gb|EDX59902.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 03BB108]
Length = 543
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/356 (32%), Positives = 209/356 (58%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P F ELIGQN + Q+L+N + + Y+ GPRGTGKTS K+F+ A+N
Sbjct: 3 QALYRKYRPSSFGELIGQNHIKQTLLNALKSNKFTHAYMLTGPRGTGKTSIGKLFAKAIN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C +C ++ + +E+D + G++++R I + ++ PS ++K
Sbjct: 63 CEHLVNGEPCNDCNQCKQIMNNSHPDILEIDAASNNGVEQIRDIREQVTYA-PSVG-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TTDI VP +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSIGAFNALLKTLEEPPKNVVFILATTDIHKVPVTIISRCQRFDFRRIGQK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++ R++ +++ E L +E +AL LI++ A G +RDA ++LDQ ++ IT + V+E+V
Sbjct: 181 DLIERMKFVASNEELQIEEEALQLISMLAQGGMRDALSLLDQTVAFASGEITKNDVSEVV 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG------ 751
G +S EK+ ++ ++ +T E + E++ +G +P+ ++ L + D++ G
Sbjct: 241 GRISIEKIEMCVQYLLTRNTTEILSLVNEVILNGKEPIYVLDDLIGYLRDLVIGKAFGVK 300
Query: 752 ----TYTI----GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
T I + L A++ +++H ++ L+E +++++ S+ L+QL
Sbjct: 301 EDNITTAIVNEHFNKLLKVADVSQMQHMIRKLTEIKQEMKFSNHAQISLEVGLIQL 356
>gi|158335444|ref|YP_001516616.1| DNA polymerase III subunits gamma and tau [Acaryochloris marina
MBIC11017]
gi|158305685|gb|ABW27302.1| DNA polymerase III gamma and tau subunits [Acaryochloris marina
MBIC11017]
Length = 688
Score = 221 bits (564), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/462 (33%), Positives = 236/462 (51%), Gaps = 44/462 (9%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
L KY+P F +L+GQ+ + +L N I RIAP YLF GPRGTGKTS+A+I + +LNC
Sbjct: 5 PLHHKYRPQVFADLVGQDAIATTLTNAIEFERIAPAYLFTGPRGTGKTSSARILAKSLNC 64
Query: 520 V--ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ T PCG C C + G S + +E+D + G+D +R +++ A RF
Sbjct: 65 LNSQTPTQTPCGTCSVCQEVALGTSLDVIEIDAASNTGVDNIRDLIER--AQFAPVQCRF 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K++ +DE H+L + + A LK LEEPP RVVFI TTD V +I SRCQ++ F +I
Sbjct: 123 KIYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIAL 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
++ L I+ +E++ + P A++LIA A G LRDAE++LDQLSLL I ++ V +LV
Sbjct: 183 DPMIQHLTHIAEQESIAITPTAVELIAQVAQGGLRDAESLLDQLSLLSGEIDNTQVWDLV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD---------- 747
G V E+ LL LL+ + A V+R L+D G +P+ ++ LA D
Sbjct: 243 GSVPEQALLALLQAIIEQQPALMVERTHALLDRGREPLTVLQNLAGFYRDLLIAKTAPTR 302
Query: 748 -----IIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--G 800
I A T+T + + E++ + + L E Q++ S++ W +LL L G
Sbjct: 303 RDLVAITAPTWTDLCQLAQQFEVDDILAKQQHLRNCETQIKNSTQPRLWLEVSLLGLLPG 362
Query: 801 SMHS----PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG----------PQYMPQ 846
+ S P L Q S +++ E S+ V + S PQ PQ
Sbjct: 363 ATQSTDPQPILIQITSQPLETATQAPEPVSAGPAHPVPPSKASAPTQPSPVVDTPQPAPQ 422
Query: 847 NAVSPASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKD 888
+ + EP +V+ + + H+ ++ + L+D
Sbjct: 423 GSFQAPPVPEP---------QVIPQPEAHSPEAEDLPNPLED 455
>gi|168003463|ref|XP_001754432.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694534|gb|EDQ80882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 220
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/225 (47%), Positives = 154/225 (68%), Gaps = 6/225 (2%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
LE R+ +QKY+P F+E++GQN+VV+SL +++ + APVY+F GPRGTGKTS A++F+
Sbjct: 1 LELTRTFNQKYRPKNFNEIVGQNVVVKSLSTAVAKRKAAPVYMFMGPRGTGKTSAARVFA 60
Query: 515 AALNCVATDQTK-PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
A LNC++ D + PCG CREC +S + ++D + + +R ++ + P A
Sbjct: 61 AGLNCLSPDYARRPCGICRECGTIALNRSADVRQIDAASNMDMASMRALMGSFT---PHA 117
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++K+F+++ C LL S W AFLK LEEPP+ VVFI ITT + +P + SRCQK+ F
Sbjct: 118 --QYKIFIVEGCDLLSSDIWNAFLKLLEEPPRNVVFILITTHAERIPPTAISRCQKFQFF 175
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETML 678
K+K+ DIV RL+ ++A+E+L VE DAL LIA +DGSLRDAE L
Sbjct: 176 KLKEPDIVKRLQFLAAKEDLRVEADALALIATRSDGSLRDAEIFL 220
>gi|407010067|gb|EKE25066.1| hypothetical protein ACD_5C00307G0001, partial [uncultured
bacterium]
Length = 379
Score = 221 bits (562), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 171/275 (62%), Gaps = 3/275 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P F+++IGQ +VQ+L N I+ GRI YLF GPRGTGKT+ A+IF+ ++NC
Sbjct: 4 SLYRKYRPATFNDVIGQTHIVQTLSNAITHGRIGHAYLFTGPRGTGKTTMARIFARSVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + I G+S + E+D + G+D +R + +++ P + ++K+
Sbjct: 64 QQPNGAIPCQECDVCKNIIEGRSLDIFEIDAASNTGVDNIRELRENVK--FPPSQAKYKI 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP +FI TT+I VP +I SRCQ+Y F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHAIFILATTEIHKVPETIISRCQRYDFTRLSLEH 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV +L KI+ E + ++ AL++IA++A+G +RDAE++L Q +SL K+IT+ V E++G
Sbjct: 182 IVKKLSKIAKSEGVEIDKQALEMIAISAEGGMRDAESLLGQVMSLEDKKITAKEVEEILG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+ L ++ + + D+ + EL G D
Sbjct: 242 TTRRKSLEDMAKFLLEKDSTNAISLINELSQDGYD 276
>gi|126697186|ref|YP_001092072.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
gi|126544229|gb|ABO18471.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9301]
Length = 586
Score = 220 bits (561), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 180/296 (60%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPNNLDELVGQKFISITLKQALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C A DQ PC C C G + + +E+D + G++ +R I++ A R
Sbjct: 66 CQAFDQPTITPCCKCDLCRQITDGSALDIIEIDAASNTGVENIREIIER--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP RVVFI TT+ + V +I+SRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPSRVVFILATTNPERVLSTIKSRCQKFDFRRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
DI L +I+ +E++ E AL +IA ++G +RDA+++L+QL+LL + IT + + L
Sbjct: 184 PSDIFQHLSEIAEKESIKYEVQALKMIAKRSNGGMRDAQSLLEQLNLLPEGITINNIQNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE +L L++ + ++ + +L D+G +P+ ++ L ++ D++ T
Sbjct: 244 LGEVSENELTNLIKSLVENNPESLIITCNKLYDAGNEPLQIIIGLLNITRDLLLHT 299
>gi|306490882|gb|ADM95000.1| DNA polymerase III gamma/tau subunits [uncultured candidate
division JS1 bacterium]
Length = 568
Score = 220 bits (561), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 183/298 (61%), Gaps = 10/298 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+S+ +K++P F++++GQ + Q+L N I RI+ YLF GPRG GKT+TA+I + ALN
Sbjct: 5 QSIYRKWRPQLFEDIVGQKHITQTLKNAIKLNRISHAYLFSGPRGVGKTTTARILAKALN 64
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PC C +C G+S + +E+DG + +G+D +R + + G A ++K
Sbjct: 65 CQKGPTEYPCNQCAQCIRINQGQSMDVLEIDGASNRGIDEIRELRSKI--GFAPAEGKYK 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H+L ++ + A LK LEEPP +V+FIF TT VP++I SRCQ + F ++
Sbjct: 123 IYIIDEVHMLTNEAFNALLKTLEEPPSQVLFIFATTAPQKVPKTILSRCQCFYFRRLSLE 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
++V +L KI+ EE LN++ +L LIA +A GS+RDAE++LDQ ++ K++T +V E++
Sbjct: 183 EMVEKLTKIATEEKLNIDLPSLRLIAESATGSMRDAESILDQVITYSEKQVTPEVVREIL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
G++ +E LL+ ++ DT ++ +L+ GVD + D+I + +
Sbjct: 243 GLIPQEIFWRLLKAIIARDTKMGLEIINQLVKEGVD-------FHKFVQDLIVYVHQV 293
>gi|325111245|ref|YP_004272313.1| DNA polymerase III subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
gi|324971513|gb|ADY62291.1| DNA polymerase III, subunits gamma and tau [Planctomyces
brasiliensis DSM 5305]
Length = 593
Score = 220 bits (560), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/368 (35%), Positives = 204/368 (55%), Gaps = 23/368 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++Y+P FD ++GQ V Q+L N I R+A YLF G RG GKTS A+I + ALNC
Sbjct: 11 LARRYRPQTFDAVVGQQHVAQALRNAIRAERVAHAYLFTGARGVGKTSMARILAKALNCT 70
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ PC C C +G + ME+DG + +G+D +R + ++ G+ S R K++
Sbjct: 71 NSQDGNPCNQCELCQAISTGSDVDVMEIDGASNRGIDDIRSLRANV--GIRSMRTRVKMY 128
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V F+F TT+ VP +I SRCQ++ F+ I+ I
Sbjct: 129 IIDEVHMLTKEAFNALLKTLEEPPPNVKFVFCTTEPHKVPDTILSRCQRFDFSSIETQKI 188
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
RL +I+A E + V P+A+DL+A A GS+RD++++ DQ L+ G RI ++ VN+L+G
Sbjct: 189 SERLAEIAASEGIEVAPEAVDLVARRAGGSMRDSQSLFDQLLAFGGARIEAADVNQLLGT 248
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+++LL L+E A S A+ + + GV L+ QL + D++ + G S
Sbjct: 249 AGDQRLLNLIESAHSGQQADLLAEVDQASREGVQLGNLLDQLVNCYRDMM--VLSCGADS 306
Query: 760 L-----------------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
L L+ + A+++LSEA+ +L S L+++ +
Sbjct: 307 LELIGVGPGAKESLQQIGQRIGLQTVMAAMQILSEAKSKLSRVSHGRALVDLALIRISML 366
Query: 803 HS-PDLTQ 809
+ DLTQ
Sbjct: 367 ENLDDLTQ 374
>gi|406920505|gb|EKD58556.1| hypothetical protein ACD_56C00097G0001 [uncultured bacterium]
Length = 614
Score = 219 bits (559), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 108/283 (38%), Positives = 175/283 (61%), Gaps = 5/283 (1%)
Query: 454 VLENIRSLS--QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAK 511
+L I SLS +KY+P+ F ++IGQ +VQ+L N I GR+ YLF GPRGTGKT+ A+
Sbjct: 1 MLHEIMSLSLYRKYRPVTFADVIGQTHIVQTLSNAIIHGRVGHAYLFTGPRGTGKTTMAR 60
Query: 512 IFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
IF+ ++NC D KPC C C + G+S + E+D + G+D +R + +++ P
Sbjct: 61 IFARSVNCQNPDGAKPCLECDVCKNISEGRSLDIFEIDAASNTGVDNIRELRENVK--FP 118
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
+ +FK+++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y
Sbjct: 119 PSQAKFKIYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYD 178
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITS 690
F ++ I+ +L I+ E + ++ +AL++IA++A+G +RDAE++L Q ++L K+IT+
Sbjct: 179 FTRLSLDHIIEKLSVIAKNEKVEIDKNALEMIAISAEGGMRDAESLLGQVMALEDKKITA 238
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
V E++G + L ++ +S++ + EL G D
Sbjct: 239 KEVEEILGTTQRQSLEAMIAYLLSNNATGAITLVNELSQDGYD 281
>gi|323140458|ref|ZP_08075386.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
gi|322415026|gb|EFY05817.1| DNA polymerase III, subunit gamma and tau [Phascolarctobacterium
succinatutens YIT 12067]
Length = 608
Score = 219 bits (559), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 171/290 (58%), Gaps = 2/290 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P FD L+GQ V +L N ++ G+IA YLF GPRGTGKTS A+I + ALNC
Sbjct: 5 ALYRQWRPQDFDALVGQKAVKTTLKNALASGKIAHAYLFSGPRGTGKTSMARILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C C + G S + +E+D + +D +R + + ++ A R+KV
Sbjct: 65 EQGPTAEPCGQCGNCQRIVQGTSLDVIEIDAASNTSVDNIRDLREQVA--FTPAESRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VFI TTD VP +IQSRCQ++ F ++ +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPAHAVFILATTDPQKVPATIQSRCQRFEFRRVTVDE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I L ++A + + DAL LIA+ A+G +RDA ++LDQ ++GKR+T + V E++G+
Sbjct: 183 IAEHLAMVAAGSGIEADADALRLIAIQAEGGMRDALSLLDQCGVMGKRVTVATVREVLGI 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V E L EL E + + L++ G D ++++L + ++
Sbjct: 243 VGREALHELTEAIGRRQLPQALATLNLLLEQGKDVKQVLTELIEYLRALV 292
>gi|342214108|ref|ZP_08706816.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
gi|341595793|gb|EGS38432.1| DNA polymerase III, subunit gamma and tau [Veillonella sp. oral
taxon 780 str. F0422]
Length = 764
Score = 219 bits (559), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 117/322 (36%), Positives = 195/322 (60%), Gaps = 11/322 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ+ V +L I ++A YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRRWRPKQFTDVVGQHHVSDTLQRAIREDKVAHAYLFAGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C + G++ + +E+D + +G+D VR + + ++ LP + KV
Sbjct: 65 EQGPTDTPCGQCESCQQMLQGQALDVIEIDAASNRGIDEVRALREQVNF-LPVVGHK-KV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L ++ W A LK +EEPP V+FIF TT+ + +P +I SRCQ+Y F +I D
Sbjct: 123 FIIDEAHMLTNEAWNALLKTIEEPPSHVMFIFATTESEKLPVTILSRCQRYTFRRITAKD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS-LLGKRITSSLVNELVG 698
I A L ++ E N++++P A +IA++ADG LRDA ++LDQ S + + IT+ LV ++G
Sbjct: 183 ITAHLLHVAKESNISLDPAAAQVIAVHADGGLRDALSILDQCSGMTSEMITAPLVETMIG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+VS+ +L+++++ + + A ++ E + G D +++ L + +I +
Sbjct: 243 LVSKSWVLDMVDILKAGNGAALLQAVDEALQMGRDARQIVTALVEHLRAMIV------AK 296
Query: 759 SLTEAE--LERLKHALKLLSEA 778
L EAE L H +LL++A
Sbjct: 297 VLPEAEELLAYDTHKERLLAQA 318
>gi|406998237|gb|EKE16179.1| hypothetical protein ACD_11C00028G0006 [uncultured bacterium]
Length = 551
Score = 219 bits (558), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 108/277 (38%), Positives = 178/277 (64%), Gaps = 5/277 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F ++ GQ+ +VQ+L N I+ RI YLF GPRGTGKT+ A++F+ A+NC
Sbjct: 5 TLYRKYRPQKFSDIFGQSHIVQTLSNAITHNRIGHAYLFTGPRGTGKTTMARLFAKAVNC 64
Query: 520 VATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ +PC C C + +GKS + E+D + G++ +R + + +A LP + ++
Sbjct: 65 QKNNAATAEPCLECEVCKNISAGKSLDIFEIDAASNTGVENIRELRE--TAKLPPSQAKY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+++IDE H+L S + A LK LEEPP V+FI TT+I VP +I SRCQ++ F +I
Sbjct: 123 KIYIIDEVHMLSSGAFNALLKTLEEPPAHVIFILATTEIHKVPDTIISRCQRFDFTRISL 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
+I+ +L I+A+E + +E AL+ IA++A+G +RDAE++L Q +SL K+IT+ V E+
Sbjct: 183 ENIIKKLSDIAAKEEVEIEKSALEAIAISAEGGMRDAESLLGQVISLEDKKITTKEVEEI 242
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+G + + + +L E +S +T + + E+ +SG D
Sbjct: 243 LGTTNRQSIEDLTEALISKNTLKAISLIDEVANSGFD 279
>gi|352685175|ref|YP_004897160.1| DNA polymerase III [Acidaminococcus intestini RyC-MR95]
gi|350279830|gb|AEQ23020.1| DNA polymerase III [Acidaminococcus intestini RyC-MR95]
Length = 610
Score = 219 bits (557), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 102/268 (38%), Positives = 161/268 (60%), Gaps = 2/268 (0%)
Query: 474 IGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRE 533
+GQ + ++L N + GRI+ YLF GPRGTGKTSTA+I + ALNC PC C
Sbjct: 1 MGQEHIRKALTNALESGRISHAYLFTGPRGTGKTSTARILAKALNCEKGPTPHPCNTCDH 60
Query: 534 CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTW 593
C + G S + +E+D + +G+D +R + + + S R+KV++IDE H++ + +
Sbjct: 61 CREITEGTSADVIEIDAASNRGIDEIRKLREQVH--FAPVSSRYKVYIIDEVHMITADAF 118
Query: 594 LAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENL 653
A LK LEEPP+ VVFI TT+ +P +I SRCQ++ F ++ DI A L+K++ N+
Sbjct: 119 NALLKTLEEPPEHVVFILATTEPQKIPTTIHSRCQRFDFRRVTVDDIAAHLQKVAEGSNI 178
Query: 654 NVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAM 713
N EPDAL L+A+ ADG +RDA +LDQ S++ +T+ V +++G+ + + L+E
Sbjct: 179 NAEPDALRLMAIQADGGMRDAVGLLDQCSIMANPVTAETVRQVLGIAGRDTMRALVEKIG 238
Query: 714 SSDTAETVKRARELMDSGVDPMVLMSQL 741
D + +LMD G D ++++L
Sbjct: 239 RRDLPAALDLLNQLMDDGKDVTQVLTEL 266
>gi|121533379|ref|ZP_01665207.1| DNA polymerase III, subunits gamma and tau [Thermosinus
carboxydivorans Nor1]
gi|121307938|gb|EAX48852.1| DNA polymerase III, subunits gamma and tau [Thermosinus
carboxydivorans Nor1]
Length = 351
Score = 219 bits (557), Expect = 1e-53, Method: Composition-based stats.
Identities = 114/284 (40%), Positives = 172/284 (60%), Gaps = 3/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P FD L+GQ+ V +L N I G+IA YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRQWRPQDFDSLVGQDHVRTTLKNAIIAGKIAHAYLFAGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC +C C SG S + E+D + +G+D +R + + + R+KV
Sbjct: 65 LHGPTPNPCNHCPHCERINSGASMDVFEIDAASNRGIDEIRDLRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVFI TT+ +P +I SRCQ+Y F +I +
Sbjct: 123 YIIDEVHMLTPEAFNALLKTLEEPPAHVVFILATTEPHKIPATIHSRCQRYDFRRIGVKE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVG 698
I RL +++A+ NLN+ PDAL LIA++ADG +RDA ++LDQ + L +T + V +L+G
Sbjct: 183 IEGRLAEVAAKNNLNITPDALKLIAVHADGGMRDALSILDQCTALDDTAVTVTHVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
++ E + + + D+ + EL+ G D L+ +LA
Sbjct: 243 LIGHEGIWRITAALANRDSTAVLLALDELVALGKDVRQLLLELA 286
>gi|407003314|gb|EKE19906.1| hypothetical protein ACD_8C00087G0006 [uncultured bacterium]
Length = 596
Score = 218 bits (556), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 168/275 (61%), Gaps = 3/275 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P+ F ++IGQ +VQ+L N I RI YLF GPRGTGKT+ A+IF+ A+NC
Sbjct: 4 ALYRKYRPLTFSDVIGQGHIVQTLSNAILHNRIGHAYLFTGPRGTGKTTMARIFARAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + G S + E+D + G+D +R + +++ P + +FKV
Sbjct: 64 QNPKGADPCLECDVCKNITQGTSLDIFEIDAASNTGVDNIRELRENVK--FPPSIAKFKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLEH 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ +L I+ EN+++E AL++IA+ ++G +RDAE++L Q ++L K+IT+ V E++G
Sbjct: 182 IIEKLSTIAKTENVSIEKSALEMIAIASEGGMRDAESLLSQVMALEDKKITAKEVEEILG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+ L +++ +S D + + EL G D
Sbjct: 242 TTQRQSLEAMVKYLLSKDASSAITLVNELSRDGYD 276
>gi|254525893|ref|ZP_05137945.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
gi|221537317|gb|EEE39770.1| DNA polymerase, gamma and tau subunit [Prochlorococcus marinus str.
MIT 9202]
Length = 586
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 112/296 (37%), Positives = 179/296 (60%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPNNLDELVGQKFISITLKEALLTKKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+A D+ PC C C G + + +E+D + G++ +R I++ A R
Sbjct: 66 CLAFDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIER--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP RV+FI TT+ + V +IQSRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
GDI L +I+ +E++ E AL +IA ++G +RDA+++ +QL+LL + IT + L
Sbjct: 184 PGDIFQHLTEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLFEQLNLLPEGITIKNIQNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE +L L++ + ++ + +L D+G +P ++ L ++ D++ T
Sbjct: 244 LGEVSEIELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLLYT 299
>gi|436670132|ref|YP_007317871.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
gi|428262404|gb|AFZ28353.1| DNA polymerase III, subunit gamma/tau [Cylindrospermum stagnale PCC
7417]
Length = 499
Score = 218 bits (555), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/371 (35%), Positives = 203/371 (54%), Gaps = 22/371 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L QKY+P EL+GQ + +L N + +IAP YLF G RGTGKTSTA+IF+ +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAVKNLQIAPAYLFTGSRGTGKTSTARIFAKSLNC 64
Query: 520 VATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ T + KPCG C+ C + S + E+D + G+D R +++ + L + R+
Sbjct: 65 LNTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCT--LVPVAGRY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
++F++DE H L +++ A LK +EEPP VVFI TT++ V +I SRCQ + F +
Sbjct: 123 RIFILDESHQLTTQSQNALLKCIEEPPPHVVFILCTTELHKVLPTIVSRCQVFNFRTLSV 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
IV LR ++ E++++ +AL IA +DG LRDA +L Q SLL IT+ V E+V
Sbjct: 183 KTIVQHLRIVADAESISINDEALIAIARLSDGGLRDALQLLGQASLLNADITAHHVMEIV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA------- 750
G V+E +L+ +L+ +++T ++ AR L+DSG P +++S L D++
Sbjct: 243 GGVTETELMAILQAITTNNTFNLLQVARVLVDSGKTPKLILSNLLQTYRDLLVIKSVPKE 302
Query: 751 GTYTIGGRSLTEAE-------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
G S T+ + E L +L L +AE LR + W LL L
Sbjct: 303 QALLTGCVSHTQLKAFANHWNFETLNLSLAELQKAENYLRYTVNAAVWLEVCLLNL---- 358
Query: 804 SPDLTQSGSSR 814
P L G+++
Sbjct: 359 MPGLLPVGATK 369
>gi|359463526|ref|ZP_09252089.1| DNA polymerase III subunits gamma and tau [Acaryochloris sp. CCMEE
5410]
Length = 700
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 203/365 (55%), Gaps = 21/365 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ+ + +L N I RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQVFADLVGQDAIATTLTNAIEFERIAPAYLFTGPRGTGKTSSARILAKSLNCL 65
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ + P CG C C + G S + +E+D + G+D +R +++ A RFK
Sbjct: 66 NSPKPTPIPCGTCSVCQEVALGTSLDVIEIDAASNTGVDNIRDLIER--AQFAPVQCRFK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++ +DE H+L + + A LK LEEPP RVVFI TTD V +I SRCQ++ F +I
Sbjct: 124 IYCLDEVHMLSTAAFNALLKTLEEPPDRVVFILATTDPQRVLPTIISRCQRFDFRRIALD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
++ L I+ +E++ + P A++LIA A G LRDAE++LDQLSLL I ++ V +LVG
Sbjct: 184 PMIQHLTHIAEQESIAITPSAVELIAQVAQGGLRDAESLLDQLSLLSGEIDNTQVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E+ LL LL+ + A V+R L+D G +P+ ++ LA D++ R
Sbjct: 244 SVPEQALLALLQAIIEQQPALMVERTHALLDRGREPLTVLQNLAGFYRDLLIAKTAPTRR 303
Query: 759 SL------TEAELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLLQL--GS 801
L T +L +L ++ L E Q++ S++ W +LL L G+
Sbjct: 304 DLVAITAPTWTDLCQLAQQFEVNDILAKQQHLRNCETQIKNSTQPRLWLEVSLLGLLPGA 363
Query: 802 MHSPD 806
S D
Sbjct: 364 AQSTD 368
>gi|325294717|ref|YP_004281231.1| DNA polymerase III subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065165|gb|ADY73172.1| DNA polymerase III, subunits gamma and tau [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 463
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 120/341 (35%), Positives = 198/341 (58%), Gaps = 11/341 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
++ +KY+P F E+ GQ + +L N I GR A Y+F GPRG GKT+TA+I + ALNC
Sbjct: 5 AIPRKYRPSKFSEVTGQEYITNTLKNAIKTGRFAHAYVFAGPRGVGKTTTARIVAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C G + +E+D +G+D++R + + S + KV
Sbjct: 65 ESLIDGEPCNECSNCQAISKGSFPDVIEIDAATNRGIDQIRELRE--SVNYAPVKGKKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ VVFI TT+ID +P +I SRCQK++F +I
Sbjct: 123 YIIDEFHMLTKEAFNALLKTLEEPPEHVVFILATTEIDKIPPTILSRCQKFVFRRIPKDL 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+V L++I +E+++ E +AL LIA ++G +RDAE++LDQ LG + +S ++E +G
Sbjct: 183 MVETLKRICEKEDVSYEEEALYLIATASEGCMRDAESLLDQAIALGNGLVKTSYISEFLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V++ +++ E+L L+ S E ++ + L G +P+ ++ QL ++ + + I G+
Sbjct: 243 VLTGKEIFEILSLSFSGKKRELREKLKRLESQGYNPLFIVKQL----LEKVEREF-IEGK 297
Query: 759 SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ +E E L A K+LS+A K + T L +L
Sbjct: 298 NFSE---EELLAAFKILSDAHKVVATHPYPYTALFFYLFKL 335
>gi|269926492|ref|YP_003323115.1| DNA polymerase III subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
gi|269790152|gb|ACZ42293.1| DNA polymerase III, subunits gamma and tau [Thermobaculum terrenum
ATCC BAA-798]
Length = 550
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/292 (38%), Positives = 182/292 (62%), Gaps = 4/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+ FDEL+GQ V ++L+N I G+IA YLF GPRGTGKTSTA++ + A+N
Sbjct: 3 QSLYRKYRSQTFDELVGQEHVKKTLINAIKSGKIAHAYLFCGPRGTGKTSTARLLAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ ++ TKPC C C G++ + +E+D +++ ++ V I++ ++ A R+K
Sbjct: 63 CL-SEGTKPCNSCSACLSINEGRAVDLIEIDAASRRKVEDVADIIERVN--FAPAELRYK 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +F+ TT++ V +I SRCQ++ F +I
Sbjct: 120 VYIIDEVHMLTTHAFNALLKTLEEPPAHAIFVLATTEVWKVLPTIISRCQRFDFRRITPR 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
+IV RL I+ EN+ ++ DAL IA + GSLRDA ++LDQL++ G + IT V +L+
Sbjct: 180 EIVERLAFIAENENIKIQKDALIAIAKASTGSLRDAISILDQLTVYGDEEITLEHVKQLL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G+V E+ + + + +DT + +L + GVDP +L S + D++
Sbjct: 240 GIVGEDVVANFVGAIIDNDTQAALSLLTQLSEHGVDPRQFTQELVSYLRDLM 291
>gi|428314877|ref|YP_007118895.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244912|gb|AFZ10696.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 217 bits (553), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 196/355 (55%), Gaps = 18/355 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P EL+GQ+ + +L N I+ +IA YLF GPRGTGKTSTA+I + +LNC+
Sbjct: 5 LHLKYRPKNLQELVGQDTIKTTLTNAITSDKIAQAYLFTGPRGTGKTSTARILAKSLNCL 64
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ + PCG C C S S + E+D + G+D R +++H + A R++
Sbjct: 65 NSKKPTATPCGECSSCKTIDSCSSLDVTEIDAASHNGVDDARELIQH--SNFAPALSRYR 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++++DECH L + A LK LEEPP VVFI TT+ V +I SRCQ + F +
Sbjct: 123 IWILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALSVD 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
IV +L KIS+ E++ + +A+ IA DG LRDA +L QLSLL IT + V E+ G
Sbjct: 183 AIVGQLHKISSAESIEIASEAMRAIARTCDGGLRDALQLLSQLSLLNSEITLTQVAEVSG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---- 754
+SE+ + LL+ S DT ++ +R L+DSG P +++S L + + D++ T
Sbjct: 243 SISEQDSIALLKAIHSGDTLSVLQSSRTLIDSGKTPKLILSSLLAAMRDLLIVKSTRHCQ 302
Query: 755 --IGG-------RSLT-EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I G RSL + E + A L ++E QLR S+ TW LL L
Sbjct: 303 NLIAGPVGYSQLRSLALHLDFETIDAACTQLQKSEFQLRTSTNAATWLEVCLLNL 357
>gi|428315131|ref|YP_007151278.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428245166|gb|AFZ10948.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 471
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 197/355 (55%), Gaps = 18/355 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P EL+GQ+ + +L N I+ +IA YLF GPRGTGKTSTA+I + +LNC+
Sbjct: 5 LHLKYRPKNLQELVGQDTIKTTLTNAITDSKIARAYLFTGPRGTGKTSTARILAKSLNCL 64
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ + PCG C C S + + E+D + G+D R +++H + A R++
Sbjct: 65 NSKKPTATPCGECSNCKTIDSSSNLDVTEIDAASHNGVDDARELIEH--SNFAPAMSRYR 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++++DECH L + A LK LEEPP VVFI TT+ V +I SRCQ + F +
Sbjct: 123 IWILDECHQLSTSAQNALLKCLEEPPAHVVFILCTTEAHKVLPTIISRCQTFNFRALPVD 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
IV +L+KIS E++ + D++ IA +DG LRDA +L QLSLL IT + V E+ G
Sbjct: 183 AIVGQLQKISDAESIAITIDSMRAIARISDGGLRDALQLLSQLSLLHSEITLTQVAEVSG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---- 754
+SE+ + LL+ S DT + AR L+DSG P +++S L +++ D++ T
Sbjct: 243 SISEQDSIALLKAIYSGDTLSVLLSARTLIDSGKTPKIILSSLLTVMRDLLVVKSTRQCQ 302
Query: 755 --IGG-------RSLT-EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I G RSL + E + A L ++E QLR S+ TW LL L
Sbjct: 303 NLIAGAVSYSQLRSLALHLDFETINAACTQLQKSEIQLRTSTNAATWLEVCLLNL 357
>gi|384916622|ref|ZP_10016777.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
gi|384525946|emb|CCG92650.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum
fumariolicum SolV]
Length = 592
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 208/363 (57%), Gaps = 29/363 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
S+KY+P F E++GQ+ VV++L N I R+A YLF GPRGTGKT+ A+I + +LNC
Sbjct: 5 FSRKYRPKVFSEVVGQDHVVRTLKNAIRLQRVAHAYLFSGPRGTGKTTLARILAKSLNCT 64
Query: 521 A-----TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D P C D +G+S + +E+DG + G+D+VR L+ + LP S
Sbjct: 65 DGPNADFDPNDPI-----CLDIDAGRSFDCIEIDGASNNGVDQVRD-LREAAKTLPVQS- 117
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPPQ V FIF TT+ +P ++ SRCQ++ F +I
Sbjct: 118 RYKIYIIDEVHMLTQAAFNALLKILEEPPQHVKFIFATTEPHKIPTTVISRCQRFHFKRI 177
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVN 694
I L+KI + E ++ + AL++IA ++G+LRDAE LDQL S G+RI + V
Sbjct: 178 PRKLIADHLQKICSYEQIDADRKALEIIADISEGALRDAEVALDQLISFYGERIDLASVQ 237
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AG 751
E+ G+V E L +L S + E +K+ L++SG DP++L + +L+ ++ A
Sbjct: 238 EMFGIVGLEPLCGILRDIASGQSLEALKKVHMLLESGKDPILLAREFRNLLHNVALFKAS 297
Query: 752 TYTIGGRSLTEAELERLKHALKLLS--------EA----EKQLRLSSERCTWFTATLLQL 799
T+ G+ L EL+ ++ A K LS EA E +LR + + F +L+L
Sbjct: 298 ITTLKGQ-LDAEELDLIREASKHLSLPLVIDLLEAMDSWENKLRYALHKEVLFEIAILEL 356
Query: 800 GSM 802
+
Sbjct: 357 SQL 359
>gi|189219682|ref|YP_001940323.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
V4]
gi|189186540|gb|ACD83725.1| DNA polymerase III, gamma/tau subunit [Methylacidiphilum infernorum
V4]
Length = 618
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 203/362 (56%), Gaps = 27/362 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
S+KY+P F E++GQ VV++L N I GR+A YLF GPRGTGKT+ A+I + +LNC
Sbjct: 19 FSRKYRPRVFSEVVGQEHVVRTLKNAIRLGRVAHAYLFSGPRGTGKTTLARILAKSLNCA 78
Query: 521 A-----TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D P C D +G+S + +E+DG + G+D+VR L+ + LP S
Sbjct: 79 DGPNADFDPDDPI-----CLDIDAGRSLDCIEIDGASNNGVDQVRE-LREAAKSLPVQS- 131
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP V FIF TT+ +P ++ SRCQ++ F +I
Sbjct: 132 RYKIYIIDEVHMLTQAAFNALLKILEEPPAHVKFIFATTEPYKIPPTVSSRCQRFHFKRI 191
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVN 694
I L+KI +E ++ E AL++IA ++G+LRDAE LDQL S G++I S V
Sbjct: 192 PRRLIADHLQKICIQEKIDAERKALEMIADISEGALRDAEVALDQLISFYGEKIDQSSVQ 251
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
E+ G+V E L LL D +K A +L++SG DP+ L+ +L+ DI +
Sbjct: 252 EMFGLVGIEPLCRLLTDLAQGDGRGALKEAHQLLESGKDPLSLLRSFRNLLHDIALYMAS 311
Query: 755 IG--GRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+ G L EL++++ + L+ + + E +LR + + F +L+L
Sbjct: 312 VESLGLELDPEELDQVRSMSSRLSLSFVINLLEAIDQWENKLRYALHKEVLFEIAILELS 371
Query: 801 SM 802
+
Sbjct: 372 QL 373
>gi|427714564|ref|YP_007063188.1| DNA polymerase III subunits gamma and tau [Synechococcus sp. PCC
6312]
gi|427378693|gb|AFY62645.1| DNA polymerase III, subunit gamma/tau [Synechococcus sp. PCC 6312]
Length = 634
Score = 217 bits (552), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 115/295 (38%), Positives = 176/295 (59%), Gaps = 4/295 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L KY+P F +L+GQ + +L N + + RIAP YLF GPRGTGKTS+A+I + +
Sbjct: 2 NYEPLHHKYRPQTFADLVGQAAITTTLTNALQQERIAPAYLFCGPRGTGKTSSARILAKS 61
Query: 517 LNCVATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC+ + P CG C C + + +E+D + G+D +R +++ A
Sbjct: 62 LNCLTAPKPTPSPCGVCDVCQAIAHSSALDVIEIDAASNTGVDNIRELIE--KAQFAPVQ 119
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV+V+DECH+L + + A LK LEEPP RV+F+ TTD V +I SRCQ++ F +
Sbjct: 120 CRYKVYVVDECHMLSTSAFNALLKTLEEPPDRVIFVLATTDPQRVLPTIISRCQRFDFRR 179
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
I D+V+ L I+ E +N+ P+A++L+A A G LRDAE++LDQLSLL IT V
Sbjct: 180 IPLADMVSHLTHIAELETININPEAVNLVAQIAQGGLRDAESLLDQLSLLDGEITIERVW 239
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+L G V E+ L +LL+ S +++ R L++ G +P++++ L D +
Sbjct: 240 DLAGSVPEQDLFQLLQAVKSQHPETLLEQTRHLLERGREPLIVLQNLTGFYRDFL 294
>gi|440680875|ref|YP_007155670.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428677994|gb|AFZ56760.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 505
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 128/349 (36%), Positives = 192/349 (55%), Gaps = 18/349 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L QKY+P EL+GQ + +L N I +IAP YL G RGTGKTSTA+IF+ +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNC 64
Query: 520 VATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ T + KPCG C+ C + S + E+D + G+D R +++ + L + R+
Sbjct: 65 LNTKKPTDKPCGICQSCRSIETSNSLDVSEIDAASNNGVDDARALIERCT--LAPIAGRY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
++F++DECH L + A LK +EEPP VVFI TT+ V +I SRCQ + F +
Sbjct: 123 RIFILDECHCLTGNAFNALLKCIEEPPPHVVFILCTTEQHKVLPTIVSRCQVFNFRTLSI 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
IV LR I+ E++++ +AL IA +DG LRDA +L Q SLL IT+ V E+V
Sbjct: 183 QTIVQHLRIIADAESISINEEALIAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA------- 750
G V+E +L+ +L+ +++T ++ AREL+DSG P +++S L D++
Sbjct: 243 GGVTEAELMAILQAISTNNTFNLLQVARELVDSGKTPKLIISNLLQTYRDLLIIKSAPQE 302
Query: 751 GTYTIGGRSLTEAE-------LERLKHALKLLSEAEKQLRLSSERCTWF 792
G S T+ + E L +L L +AE LR + W
Sbjct: 303 QALLTGCVSHTQLKAFAKHWNFETLNLSLAELQKAENYLRYTVNAAVWL 351
>gi|302035663|ref|YP_003795985.1| DNA polymerase III subunit gamma/tau [Candidatus Nitrospira
defluvii]
gi|300603727|emb|CBK40058.1| DNA polymerase III, gamma and tau subunits [Candidatus Nitrospira
defluvii]
Length = 625
Score = 216 bits (551), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 118/344 (34%), Positives = 194/344 (56%), Gaps = 21/344 (6%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P FD++IGQ+ VVQ+L+N+I+ RIA +LF G RG GKT+ A+I + ALNC
Sbjct: 7 ARKYRPGTFDDVIGQSHVVQTLMNSIATKRIAHAFLFSGTRGVGKTTVARILAKALNCEQ 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
PC C C + G S + +E+DG + +D VR I +++ +++V++
Sbjct: 67 GPTGTPCNTCANCREITQGTSVDVVEIDGASNTSVDDVREIRENVK--FTPFRGQYRVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + + A LK LEEPP VVFIF TT+I +P +I SRCQ Y F +I +IV
Sbjct: 125 IDEVHMLSNSAFNALLKTLEEPPSHVVFIFATTEIHKIPATILSRCQHYNFRRISKAEIV 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
RLR ++ ++ L +E +L +A ++GS+RD ++LDQ ++ G I + L+G V
Sbjct: 185 QRLRHVADQDGLTIEDRSLMALARASEGSMRDGLSLLDQIIAFGGNTIRHEDLETLLGAV 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG--- 757
+E++ ++E + D+A+ ++ L+D G D + L + +++ G
Sbjct: 245 PQERIRAMVEAVIQQDSAKALQVIAALLDQGHDVRAYCADLVEYVRNMLVAAVVPSGPEL 304
Query: 758 RSLTEA---------------ELERLKHALKLLSEAEKQLRLSS 786
RSL EA +E+L+ ++ + AE LR+S+
Sbjct: 305 RSLIEATEEDLTQLARDAERFTVEQLQELFRMYAAAEDSLRVSA 348
>gi|374710504|ref|ZP_09714938.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
inulinus CASD]
Length = 569
Score = 216 bits (550), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 176/292 (60%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F +L GQ + Q+L N +++ + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVYRPQTFHDLAGQQHIAQTLQNALTKQQFSHAYLFTGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C ++PC C C +G + +E+D + G+D +R I + PS R+K
Sbjct: 64 CEQAPTSEPCNECAACRGITAGSIADVIEIDAASNNGVDEIRDIRDKVKYA-PS-EVRYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ VFI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPEHAVFILATTEPQKIPLTIISRCQQFDFRRIPSS 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
+I RLR + +++L E +AL LIA ++G +RDA ++LDQ + + IT V ++
Sbjct: 182 EIFQRLRFVVQDQHLEAEDEALQLIAKASEGGMRDALSVLDQTAAYSEAAITVQDVLDVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G+V+++ + EL+EL M ++ A V + L+D G DP+ LM Q+ D++
Sbjct: 242 GMVADQMIRELIELLMENNAAAAVGKIGALLDQGKDPLRLMEQMIYYYRDLL 293
>gi|87307573|ref|ZP_01089717.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
gi|87289743|gb|EAQ81633.1| DNA polymerase III gamma and tau subunits [Blastopirellula marina
DSM 3645]
Length = 618
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 180/298 (60%), Gaps = 5/298 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++++Y+P F+EL+GQ+ V Q+L N I RGR+ YLF G RG GKTS+A+I + ALNC
Sbjct: 21 VARRYRPQSFEELVGQSQVAQALKNAIERGRVGHAYLFTGARGVGKTSSARILAKALNCQ 80
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C G+ + +E+DG + +G++ +R + +++ PS + RFK++
Sbjct: 81 RGPSATPCNECDICRSVTVGEDVDVLEIDGASNRGIEEIRQLRSNVNIR-PSRA-RFKIY 138
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+ + + A LK LEEPP+ V FIF TTD + +P ++ SRCQ++ F I+ +I
Sbjct: 139 IIDEVHMFTKEAFNALLKTLEEPPEHVKFIFCTTDPEKIPITVLSRCQRFDFGGIRMDEI 198
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVGV 699
V RL I E + EP+AL L+A A+GS+RD++++L+QL G R IT + VN+++G
Sbjct: 199 VTRLAYIVENEGVTAEPEALRLLARKANGSMRDSQSLLEQLLAFGGREITVADVNQMLGA 258
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
E++ ++ + D A + + + G+DP L+ QL D++ T +G
Sbjct: 259 AGSEQIAVIMTALAARDAAAVLAYFDQALTRGIDPGQLIEQLLGFFRDMM--TLAVGA 314
>gi|373456663|ref|ZP_09548430.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
gi|371718327|gb|EHO40098.1| DNA polymerase III, subunits gamma and tau [Caldithrix abyssi DSM
13497]
Length = 522
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 185/320 (57%), Gaps = 5/320 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++++Y+P F+E+IGQ V ++L N I+ GRIA Y+F GPRG GKT+TA+I + A+NC
Sbjct: 6 IARRYRPQTFEEVIGQEHVSKTLANAIANGRIAHAYIFSGPRGVGKTTTARILAKAVNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C G + + E+DG + +G+D +R + + + PS +++V+
Sbjct: 66 KGPTPTPCNACPSCQAITKGNALDVYEIDGASNRGIDEIRNLREKIRFA-PSMG-KYRVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ V+FIF TT+I VP +I SRCQ++ F ++ I
Sbjct: 124 IIDEVHMLTKEAFNALLKTLEEPPEHVIFIFATTEIHRVPPTILSRCQRFDFRRMPIKTI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ LRKI EN+ VE +AL IA ADGS+RD++++LDQL S G I V + +GV
Sbjct: 184 MEHLRKICDSENIKVEEEALLQIAKKADGSMRDSQSILDQLISFSGNEIKFEDVAKALGV 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ +++ L + +SD + A ++ +G D + L +I+ T
Sbjct: 244 IHQDEFFHLTDYIRNSDIKNIILTANKIFQTGYDLNEFLLGLEEHFRNILVLKATNSPDL 303
Query: 760 L--TEAELERLKHALKLLSE 777
L +E LER + K +SE
Sbjct: 304 LDTSEVYLERYRELAKEISE 323
>gi|430742263|ref|YP_007201392.1| DNA polymerase III subunits gamma and tau [Singulisphaera
acidiphila DSM 18658]
gi|430013983|gb|AGA25697.1| DNA polymerase III, subunit gamma/tau [Singulisphaera acidiphila
DSM 18658]
Length = 589
Score = 215 bits (548), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 140/418 (33%), Positives = 224/418 (53%), Gaps = 29/418 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++++Y+P F++++GQ+ VV+SL N I R+ YLF G RG GKTS A+IF+ LNCV
Sbjct: 13 VARRYRPQRFEDVVGQDNVVESLRNAIKLNRVTHAYLFSGTRGVGKTSIARIFAKCLNCV 72
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C C +G+ + +E+DG + G++ VR + ++ GL + RFK++
Sbjct: 73 KGPTDQPCLQCDICQAIATGEDVDVLEIDGASNNGVESVRELRQN--TGLRPSRARFKIY 130
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
IDE H+L + + A LK LEEPP V F F TT+ +P ++ SRCQ+Y F I I
Sbjct: 131 YIDEVHMLSTGAFNALLKTLEEPPPHVKFFFATTEPGKIPVTVLSRCQRYDFAGITPEQI 190
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
VA L I E + EP+AL IA A GS+RDA+++++Q LS G+R+T V+ L+G
Sbjct: 191 VATLSDICIREQIQAEPEALQTIARRAGGSMRDAQSLVEQLLSSAGERLTVEAVHRLLGT 250
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AG----- 751
S+E++L++L+ D+ ++ + G+ P L++ + + D++ AG
Sbjct: 251 ASDERILDVLDALADHDSGAVLRLVDAAANQGIQPTDLLNGVIDFLRDVMVLSAGADQTV 310
Query: 752 -TYTIGGRSLTEAELER-----LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS- 804
T T R +A ++R + AL++L EA +LR S T L+++ + +
Sbjct: 311 LTATPRQRPRLQAVVDRWPLDSILAALQILPEARSKLRGSPHGRTIIEVGLVKVARLENL 370
Query: 805 ---PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVN 859
DL G DPS T +V K+++ P P+ A + REPV
Sbjct: 371 AEISDLV--GRLVALEGGLPPMDPSQT----LVKKKLAPPD--PEPASPSIARREPVQ 420
>gi|171920556|ref|ZP_02931825.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
gi|171903253|gb|EDT49542.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 13 str. ATCC 33698]
Length = 603
Score = 215 bits (547), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 190/315 (60%), Gaps = 2/315 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F ++IGQN++ Q+L+N + Y+F GPRG GKTS A+IF+A++NC
Sbjct: 5 TLYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + CG C C I+ +S + +E+D + G+D++R I +++ LP+ ++KV
Sbjct: 65 LKPNNGDCCGECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINY-LPTLF-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + W A LK +EEPPQ V+FIF TT+ +P +I SRCQ+Y FN++ + +
Sbjct: 123 YIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ + ++ +E++ + +A++ + ADG+ RD ++LDQL K I L+N+ G+
Sbjct: 183 LQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGL 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K++ L+EL +D E K EL D G++ +Q+ ++++D + T +
Sbjct: 243 VDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTNDETN 302
Query: 760 LTEAELERLKHALKL 774
L + ++ LK L +
Sbjct: 303 LKKISIDELKKILSI 317
>gi|185178753|ref|ZP_02964562.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188024380|ref|ZP_02997046.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188518706|ref|ZP_03004131.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|188524139|ref|ZP_03004211.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195867490|ref|ZP_03079494.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198273501|ref|ZP_03206037.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225551370|ref|ZP_03772316.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
gi|184209363|gb|EDU06406.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 5 str. ATCC 27817]
gi|188018648|gb|EDU56688.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 7 str. ATCC 27819]
gi|188997708|gb|EDU66805.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 11 str. ATCC 33695]
gi|195660025|gb|EDX53405.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 12 str. ATCC 33696]
gi|195660966|gb|EDX54219.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 9 str. ATCC 33175]
gi|198250021|gb|EDY74801.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 4 str. ATCC 27816]
gi|225379185|gb|EEH01550.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 8 str. ATCC 27618]
Length = 603
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/315 (34%), Positives = 190/315 (60%), Gaps = 2/315 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F ++IGQN++ Q+L+N + Y+F GPRG GKTS A+IF+A++NC
Sbjct: 5 TLYRKYRPHKFKDVIGQNLIKQALINANLNDKTTHAYIFSGPRGIGKTSIARIFAASINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + CG C C I+ +S + +E+D + G+D++R I +++ LP+ ++KV
Sbjct: 65 LKPNNGDCCGECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINY-LPTLF-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + W A LK +EEPPQ V+FIF TT+ +P +I SRCQ+Y FN++ + +
Sbjct: 123 YIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ + ++ +E++ + +A++ + ADG+ RD ++LDQL K I L+N+ G+
Sbjct: 183 LQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGL 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K++ L+EL +D E K EL D G++ +Q+ ++++D + T +
Sbjct: 243 VDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTNDETN 302
Query: 760 LTEAELERLKHALKL 774
L + ++ LK L +
Sbjct: 303 LKKISIDELKKILSI 317
>gi|206895302|ref|YP_002246820.1| DNA polymerase III subunit gamma and tau [Coprothermobacter
proteolyticus DSM 5265]
gi|206737919|gb|ACI16997.1| DNA polymerase III, gamma and tau subunit [Coprothermobacter
proteolyticus DSM 5265]
Length = 522
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/287 (37%), Positives = 177/287 (61%), Gaps = 4/287 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F+E++GQ+ V + L + +I+ YLF GP+G+GKTS A+IF+ LNC
Sbjct: 2 ALYRKYRPQTFEEVVGQSHVTEILTKALDNQKISHAYLFAGPKGSGKTSCARIFAKGLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+KPC C C G S + +E+D + +G+D +R + + + A R+KV
Sbjct: 62 ETGITSKPCNECESCKLINEGHSLDVIEIDAASNRGVDEIRELRERVKYR--PAQSRYKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ VVFI TTD +P ++ SRCQ++ F K+ +
Sbjct: 120 YIIDEAHMLTREAFNALLKTLEEPPEYVVFILATTDPQKIPPTVLSRCQRFRFKKLTSDE 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+ L + E + + +AL+LIA +DG++RDA +L+Q+S++ + +++ L+
Sbjct: 180 VFQILENVCKSEGFSYQREALELIAEVSDGAVRDALNLLEQISVVDEGKVSIKTARFLLN 239
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
VV +E +L+LL+ A +D E V+R ELM+SGV+PM L + SL+
Sbjct: 240 VVEDEVILDLLKTAF-ADMDEAVERLAELMESGVEPMELFRTMKSLV 285
>gi|194476906|ref|YP_002049085.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
gi|171191913|gb|ACB42875.1| DNA polymerase, gamma and tau subunits [Paulinella chromatophora]
Length = 584
Score = 214 bits (546), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 181/291 (62%), Gaps = 4/291 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L QKY+P D+L+GQ + +L N + RIA YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 8 LHQKYRPQRLDQLVGQEAIATTLSNALVYRRIATAYLFSGPRGTGKTSSARILARSLNCL 67
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+D T+PCG C C SG++ + +E+D + G++ +R +++ + R+K
Sbjct: 68 NSDSPTTEPCGKCELCISITSGRALDVIEIDAASNTGVENIRELIER--SKFSPVQARWK 125
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEP +++FI TTD + ++ SRCQ++ F ++
Sbjct: 126 VYVIDECHMLSAAAFNALLKTLEEPQPKLLFILATTDPQRMLTTVISRCQRFDFRRVCPI 185
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+ L I+ E++++ +A+ L+A +A GSLRDAE +LDQLSLL I + V EL+G
Sbjct: 186 TLKGHLVFIADREDISISVEAISLVAKSAQGSLRDAENLLDQLSLLQGPIEVNSVWELLG 245
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ E++LLEL +S ++R R L D G +P++++ L S++ D++
Sbjct: 246 EIPEQELLELGSALISEKPLTILERCRCLFDRGREPILILQGLTSILRDLV 296
>gi|292669040|ref|ZP_06602466.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
gi|292649295|gb|EFF67267.1| DNA polymerase III, gamma/tau subunit DnaX [Selenomonas noxia ATCC
43541]
Length = 644
Score = 214 bits (545), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/350 (34%), Positives = 199/350 (56%), Gaps = 17/350 (4%)
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
GV + +L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI
Sbjct: 31 GVTMSYVALYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKI 90
Query: 513 FSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ ALNC PCG C C G S + E+D + +G+D +R + + + P+
Sbjct: 91 LARALNCAEGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFA-PT 149
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
A R+K+++IDE H+L ++ + A LK LEEPP+RV+FI TT+ VP +IQSRCQ+Y F
Sbjct: 150 AG-RYKIYIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDF 208
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSS 691
++I +I RL + E + E DAL LIAL ADG +RDA ++LDQ + L + ++T+
Sbjct: 209 HRITVTEIRDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGQLTTE 268
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMD 747
V E +G+V + ++ D + + EL+ +G + ++ +LA SL++
Sbjct: 269 RVQEALGLVGHAWIEKMAMQIADCDAPALIAQLGELLQNGRELKQILGELAQYFRSLMIV 328
Query: 748 IIAGTYTIGGRSLTEAEL----------ERLKHALKLLSEAEKQLRLSSE 787
+ GT + + ++ E++ L+ L+E ++LR S +
Sbjct: 329 GVGGTVSAAEFCAEQEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQ 378
>gi|374855143|dbj|BAL58007.1| DNA polymerase III subunit gamma/tau [uncultured Chloroflexi
bacterium]
Length = 528
Score = 214 bits (544), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 140/430 (32%), Positives = 223/430 (51%), Gaps = 18/430 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++ F E++GQ V Q+LVN + R+A YLF GPRGTGKT+TA++ + A+N
Sbjct: 8 QALYRKWRSQTFAEVVGQQHVTQTLVNALKLDRVAHAYLFAGPRGTGKTTTARLLAKAVN 67
Query: 519 CVATDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C A DQ +PC C C G+ + +E+D + G+D +R + + ++ R
Sbjct: 68 CQAEDQAARPCNRCEICLAVNEGRLLDLIEIDAASNTGVDDIRDLREKVN--FRPGQARR 125
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K ++IDE H+L + + A LK LEEPP+ V+F+ TT+ + +P +I SRCQ++ F +IK
Sbjct: 126 KFYIIDEVHMLSNSAFNALLKTLEEPPEHVIFVLATTEPEKIPATITSRCQRFDFRRIKL 185
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696
DIV RL I +E L EP AL+ IA A GS+RDA ++LDQL+ G + IT LV +
Sbjct: 186 ADIVNRLSYIVEQEGLKAEPAALEYIARQASGSMRDAISLLDQLTAYGTETITLELVQTV 245
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G V+ + ++ L++ + + A + +++ GVDP L +L + ++ +G
Sbjct: 246 LGAVTSQAVMALVDALIERNVAAGLDLINQIISEGVDPRQLARELVEYLRSVM--LVKLG 303
Query: 757 -GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL--GSMHSPDLTQSGSS 813
G+SL E L + AE + + + + F L+ + G + P L +
Sbjct: 304 NGQSLLNVPDETLAVMTAQAARAEGAVIVRA--TSLFNQALVDIKSGLLAVPQLPLELAF 361
Query: 814 RRQSSRTTEEDPSSTSREAVV-YKRMSGPQYMPQNAV------SPASLREPVNGNSRHLG 866
+ TT P T RE V + +S P +V PA V R
Sbjct: 362 VEAITSTTASQPVETVRETPVEVETVSRSSEAPPRSVFKEPEQMPAGTGVTVEAVQRCFA 421
Query: 867 EVLSRIDGHN 876
VL I+ N
Sbjct: 422 SVLKEIEKKN 431
>gi|335427716|ref|ZP_08554638.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|335429156|ref|ZP_08556058.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334890236|gb|EGM28508.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
gi|334894186|gb|EGM32390.1| DNA polymerase III subunits gamma and tau [Haloplasma contractile
SSD-17B]
Length = 666
Score = 214 bits (544), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/329 (35%), Positives = 191/329 (58%), Gaps = 15/329 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F +++GQ + ++ N + + +IA YLF GPRGTGKT+ AKI + A+N
Sbjct: 4 KALYRVYRPQTFKDVVGQAHITRTFKNALEKNKIAHAYLFTGPRGTGKTTVAKIIAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + ++PC C C SG + E+D + G+D +R I + P+ RFK
Sbjct: 64 CEQSPISEPCNNCENCKSINSGFDSDVFEIDAASNNGVDEIREIRDKVKYS-PTHG-RFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKIPATIISRCQRFDFRSISIQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV+RLR++ A+E++ V+ A+ IA NA G +RDA ++LDQ +S + ++ V+E+
Sbjct: 182 HIVSRLREVVAKEDIRVDEQAIITIAKNAKGGMRDALSLLDQAISFSDEYVSEENVHEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G VSEEKL +L S TAE+++ EL+ G + L+ L D+
Sbjct: 242 GTVSEEKLYQLASAMTDSKTAESIEIVDELLSLGKEVTRLIEDLIYYYRDL--------- 292
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSS 786
L +L+++ H L + + +E+ L+L++
Sbjct: 293 --LLIQKLDQIDHEL-ITNHSEQTLKLAT 318
>gi|238926315|ref|ZP_04658075.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
gi|238885719|gb|EEQ49357.1| DNA polymerase III, subunits gamma and tau [Selenomonas flueggei
ATCC 43531]
Length = 615
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 116/323 (35%), Positives = 186/323 (57%), Gaps = 5/323 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+I+ YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG+C C G S + E+D + +G+D +R + + S +K+
Sbjct: 65 AEGPTLTPCGHCDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRE--SVKFAPTEGLYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+RV+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + E DAL +IA+ ADG +RDA ++LDQ + L + +T+ V E +G
Sbjct: 183 ICDRLIYVCKESGIEAEEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGT-YTIG 756
+V + ++ E + D A + + +L+ +G + ++ +LA + IAG TI
Sbjct: 243 LVGRAWIRQMAEQIAARDAAALITQLSQLLQNGRELRQVLVELAQYFRSLMIAGVGGTIS 302
Query: 757 GRSLTEAELERLKHALKLLSEAE 779
L + E+L+ SE E
Sbjct: 303 AAELCAGDAEQLRADAAQFSEDE 325
>gi|217077772|ref|YP_002335490.1| DNA polymerase III gamma and tau subunit [Thermosipho africanus
TCF52B]
gi|419760371|ref|ZP_14286650.1| DNA polymerase III subunits gamma and tau [Thermosipho africanus
H17ap60334]
gi|217037627|gb|ACJ76149.1| DNA polymerase III, gamma and tau subunit [Thermosipho africanus
TCF52B]
gi|407514474|gb|EKF49289.1| DNA polymerase III subunits gamma and tau [Thermosipho africanus
H17ap60334]
Length = 480
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 126/375 (33%), Positives = 203/375 (54%), Gaps = 21/375 (5%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+++L +KY+P F E++GQN V +N++ G I+ Y+F GPRGTGKT+ A+I + +L
Sbjct: 1 MQALYRKYRPKLFSEVVGQNHVKTLFLNSLKNGEISHAYIFAGPRGTGKTTVARILAKSL 60
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
NC + +PC C C +G + +E+D + +G+D +R I + + G +A +
Sbjct: 61 NCENKNGVEPCNKCNTCQSIDNGSFMDVLEIDAASNRGIDEIRKIRE--TVGYHAAQGNY 118
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP VVFI TT+ + +P++I SRCQ F +
Sbjct: 119 KVYIIDEVHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNLTI 178
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL-LGKRITSSLVNEL 696
DI+ RL + +EN+N+ +AL+ IA A+G +RDA T+L+Q+S K IT V E
Sbjct: 179 EDIIKRLEFVCKKENINISQEALNEIAKRANGGMRDALTILEQVSKSSSKDITIEDVRET 238
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV-LMSQLASLIMDIIAGTYTI 755
+G+V E + E+++ D +T + ++ SG DP V LM L +I+ I +G Y
Sbjct: 239 LGLVPIEVINEMIDSIKIGDIKKTTEIIEKVYFSGKDPEVFLMQLLEEMILKIESGDY-- 296
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRR 815
L LK LSE K ++ S E+ L + + P + ++
Sbjct: 297 -----------ELIEFLKPLSEILKDIKYSEEKLILIKLGFLSVMKLKPP----RENIKK 341
Query: 816 QSSRTTEEDPSSTSR 830
+ E +P S+
Sbjct: 342 NVEKAEENEPIPESK 356
>gi|108862500|gb|ABA97148.2| expressed protein [Oryza sativa Japonica Group]
Length = 544
Score = 213 bits (543), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 113/218 (51%), Positives = 151/218 (69%), Gaps = 10/218 (4%)
Query: 611 FITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGS 670
IT+DID++PR+ + CQK+ F KIK DIV RL +I EE L + D L I+ ++GS
Sbjct: 1 MITSDIDSLPRTSITHCQKFHFPKIKVADIVYRLERICIEEGLEFDHDGLYFISAKSNGS 60
Query: 671 LRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDS 730
LRDAE MLDQLSLLGK+IT SLV+ELVG VS+++L+ELL+LA+SSDT TV+RARELM S
Sbjct: 61 LRDAEIMLDQLSLLGKKITISLVHELVGSVSDDELIELLDLALSSDTTNTVRRARELMAS 120
Query: 731 GVDPMVLMSQLASLIMDIIAGTYT----------IGGRSLTEAELERLKHALKLLSEAEK 780
+DP+ L+SQLA+LIMDI++G +G +L E +++L+HALK+LSE EK
Sbjct: 121 AIDPLQLVSQLANLIMDILSGRCQSAVTEVSKSFLGRYALAEVGIKKLRHALKILSETEK 180
Query: 781 QLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQSS 818
QLR S + TW T LLQ G+ S + +S S+
Sbjct: 181 QLRTSRNQATWVTVALLQFGTNESNLIAESNDMHAHSA 218
Score = 57.4 bits (137), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 913 KLGEIWAQCIERCHSKTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSI 972
KL IW + I +C S++ K L+ G L S+ E + IA V F D SRAE+ S I
Sbjct: 255 KLENIWRRAIGKCQSRSAKNFLRKEGFLSSVHVTEELAIAEVGFSHPDHISRAEKMQSLI 314
Query: 973 TNSIETVLRRNVEVRIILLP 992
++++ VL NVEV+ L+P
Sbjct: 315 ESTLQNVLGCNVEVKFKLVP 334
>gi|418618851|ref|ZP_13181703.1| DNA polymerase III, subunit gamma and tau [Staphylococcus hominis
VCU122]
gi|374826420|gb|EHR90317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus hominis
VCU122]
Length = 569
Score = 213 bits (543), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 152/539 (28%), Positives = 272/539 (50%), Gaps = 39/539 (7%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ E++L+ E AL+ IA ++G +RDA +++DQ G + +T V +
Sbjct: 180 TEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V E L EL ++ + E R + G + L++ + + D I TI
Sbjct: 240 VTGSVDEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNK-TI 298
Query: 756 GGRS----LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSG 811
++ LT+ +LE L + + ++++ +R S + F L++L M ++
Sbjct: 299 NEQTSYDALTQFDLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM-----VKTN 353
Query: 812 SSRRQSSRTTEEDPSSTS-REAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLS 870
++ ++ TT P +T V+ +RM +N + + N++H +
Sbjct: 354 PTKVENVATT---PVATEPNNEVLLQRME----QLENEIKTLKAQGISQSNNKH-----T 401
Query: 871 RIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHS--- 927
+ + H S S+ + A +++Q ++ + + L E W + I+ S
Sbjct: 402 QTNTH------SRSKRQSKAAFSMTQIAKVLDEA--NKEDIQLLKEHWQEVIDYAKSNDK 453
Query: 928 KTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEV 986
K+L LLQ + + +RVLI + +I ++ E +I N + ++ +NVEV
Sbjct: 454 KSLVSLLQ--NSIPVAASRKRVLIQFDEEIHCEIVNKDEEKRKNIENVVCNIIDKNVEV 510
>gi|188584657|ref|YP_001916202.1| DNA polymerase III subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349344|gb|ACB83614.1| DNA polymerase III, subunits gamma and tau [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 589
Score = 213 bits (542), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 180/296 (60%), Gaps = 5/296 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+ ++L ++++P +F +L+GQ VV +L N IS+ RI+ YLF GPRGTGKTS AK+F+ A
Sbjct: 2 DYQALYRQWRPKYFRDLVGQEHVVTTLKNAISQSRISHAYLFSGPRGTGKTSVAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + +PCG C C + G + +E+D + +G+D +R I H++ PS
Sbjct: 62 LNCDHSQDNEPCGQCSRCIEHDRGTFMDILEIDAASNRGIDEIREIRDHVAYS-PSEG-N 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+++DE H+L ++ + A LK LEEPP V+FI TT+ +P ++ SRCQ++ F ++
Sbjct: 120 YKVYIVDEVHMLTTEAFNALLKTLEEPPDYVIFILATTEPHKLPMTVLSRCQRFDFYRLS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL--GKRITSSLV 693
I +L+ + +NL+ ++L +IA +DG +RDA ++LDQ LS L G+++ V
Sbjct: 180 TSKIEKQLQNVIDSKNLSATKESLSIIAKKSDGGMRDALSLLDQSLSFLGSGEQLKVDHV 239
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
E+ G VSE+ +LL D A+ + ++L DSG D ++ L + D++
Sbjct: 240 LEVTGTVSEDTFYDLLMALKEGDLAQILNIVQQLSDSGKDFGQFLNDLIVYLRDLL 295
>gi|314935127|ref|ZP_07842480.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
subsp. hominis C80]
gi|313656462|gb|EFS20201.1| DNA polymerase III, gamma and tau subunits [Staphylococcus hominis
subsp. hominis C80]
Length = 569
Score = 212 bits (540), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 152/539 (28%), Positives = 272/539 (50%), Gaps = 39/539 (7%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ E++L+ E AL+ IA ++G +RDA +++DQ G + +T V +
Sbjct: 180 TEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V E L EL ++ + E R + G + L++ + + D I TI
Sbjct: 240 VTGSVDEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNK-TI 298
Query: 756 GGRS----LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSG 811
++ LT+ +LE L + + ++++ +R S + F L++L M ++
Sbjct: 299 NEQTSYDALTQFDLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM-----VKTN 353
Query: 812 SSRRQSSRTTEEDPSSTS-REAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLS 870
++ ++ TT P +T V+ +RM +N + + N++H +
Sbjct: 354 PTKVENVATT---PVATEPNNEVLLQRME----QLENELKTLKAQGISQSNNKH-----T 401
Query: 871 RIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHS--- 927
+ + H S S+ + A +++Q ++ + + L E W + I+ S
Sbjct: 402 QTNTH------SRSKRQSKAAFSMTQIAKVLDEA--NKEDIQLLKEHWQEVIDYAKSNDK 453
Query: 928 KTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEV 986
K+L LLQ + + +RVLI + +I ++ E +I N + ++ +NVEV
Sbjct: 454 KSLVSLLQ--NSIPVAASRKRVLIQFDEEIHCEIVNKDEEKRKNIENVVCNIIDKNVEV 510
>gi|228474144|ref|ZP_04058881.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
gi|228271839|gb|EEK13176.1| DNA polymerase III subunit gamma/tau [Staphylococcus hominis SK119]
Length = 569
Score = 212 bits (540), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 152/539 (28%), Positives = 272/539 (50%), Gaps = 39/539 (7%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFSDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNPHDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ E++L+ E AL+ IA ++G +RDA +++DQ G + +T V +
Sbjct: 180 TEQIVERLRFVAQEQSLDYEEAALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDVLD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V E L EL ++ + E R + G + L++ + + D I TI
Sbjct: 240 VTGSVDEASLNELFNDIVNGNVKEAFSRYHHFVSEGKEVNRLINDMIYFVRDTIMNK-TI 298
Query: 756 GGRS----LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSG 811
++ LT+ +LE L + + ++++ +R S + F L++L M ++
Sbjct: 299 NEQTSYDALTQFDLETLYYMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM-----VKTN 353
Query: 812 SSRRQSSRTTEEDPSSTS-REAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLGEVLS 870
++ ++ TT P +T V+ +RM +N + + N++H +
Sbjct: 354 PTKVENVATT---PVATEPNNEVLLQRME----QLENELKTLKAQGISQSNNKH-----T 401
Query: 871 RIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHS--- 927
+ + H S S+ + A +++Q ++ + + L E W + I+ S
Sbjct: 402 QTNTH------SRSKRQSKAAFSMTQIAKVLDEA--NKEDIQLLKEHWQEVIDYAKSNDK 453
Query: 928 KTLKQLLQVHGKLLSISEVERVLIAYVAFGDGDIKSRAERFLSSITNSIETVLRRNVEV 986
K+L LLQ + + +RVLI + +I ++ E +I N + ++ +NVEV
Sbjct: 454 KSLVSLLQ--NSIPVAASRKRVLIQFDEEIHCEIVNKDEEKRKNIENVVCNIIDKNVEV 510
>gi|410582418|ref|ZP_11319524.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
gi|410505238|gb|EKP94747.1| DNA polymerase III, subunit gamma/tau [Thermaerobacter subterraneus
DSM 13965]
Length = 781
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/296 (35%), Positives = 173/296 (58%), Gaps = 10/296 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+ ++L + ++P FD ++GQ V+++L N + GR+A YLF GPRGTGKTS AK+ +
Sbjct: 3 QPYQALYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
A+NC + + +PC C C + G + + +E+D + +G+D +R + + + A
Sbjct: 63 AVNCQSPEGVEPCNRCDLCREINDGSTMDVLEIDAASNRGIDEIRELRERVRYA--PARG 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L ++ + A LK LEEPP +FI TT+ +P +I SRCQ++ F+++
Sbjct: 121 RYKVYIIDEVHMLTTEAFNALLKTLEEPPTHALFILATTEPHRLPATIVSRCQRFDFHRL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
IV RL + + EP+AL L+A A+G LRDA ++LDQ L++ G R+ ++V
Sbjct: 181 SPEQIVQRLEAVCTAMGVEAEPEALRLLARLAEGGLRDALSLLDQCLAMGGDRLEVAVVT 240
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
EL+G+ E +L L + D ++ +L GVD LA + D +A
Sbjct: 241 ELLGLAPGEGILALTRAVVEGDMGAGLRAVADLAAQGVD-------LAQALRDWVA 289
>gi|320159544|ref|YP_004172768.1| DNA polymerase III subunits gamma and tau [Anaerolinea thermophila
UNI-1]
gi|319993397|dbj|BAJ62168.1| DNA polymerase III gamma and tau subunits [Anaerolinea thermophila
UNI-1]
Length = 553
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/298 (35%), Positives = 182/298 (61%), Gaps = 7/298 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P +++++GQ+ ++Q+L N + GR+ YLF GPRGTGKT+TA++ + A+N
Sbjct: 3 QALYRKWRPRLWEQVVGQDHIIQTLRNAVRTGRVGHAYLFAGPRGTGKTTTARLLAKAVN 62
Query: 519 CVATDQTK-PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C+ D K PC C C G+ + +E+D + ++ VR + ++ PS R+
Sbjct: 63 CLEEDPAKRPCDQCAHCIAVNEGRFLDLIEIDAASNTSVEDVRDLRDKINFA-PSQG-RY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP +FI TT++ +P ++ SRCQ++ F ++
Sbjct: 121 KVYIIDEVHMLSTAAFNALLKTLEEPPAHAIFILATTEVHKIPATVLSRCQRHEFRRVPV 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I A LR+ +AE+ L V+ DAL +IA A GS RDA ++LDQLS G+R+T +V ++
Sbjct: 181 QQIAALLRQKAAEDGLAVDEDALLMIARQATGSFRDAISILDQLSSTGERVTLEMVQSVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
G + E + L++ ++ + A+ ++ ++ +D G DP Q A ++D + G +
Sbjct: 241 GTAAGEPIRLLVDAILARNAAQGLQIIQQTLDGGADP----RQFARQVVDYLRGLLLV 294
>gi|209554162|ref|YP_002284512.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225550499|ref|ZP_03771448.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
gi|209541663|gb|ACI59892.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 10 str. ATCC 33699]
gi|225379653|gb|EEH02015.1| DNA polymerase III subunits gamma and tau [Ureaplasma urealyticum
serovar 2 str. ATCC 27814]
Length = 603
Score = 212 bits (539), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 189/315 (60%), Gaps = 2/315 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F ++IGQN++ Q+L+N + Y+F GPRG GKTS A+IF+A++NC
Sbjct: 5 TLYRKYRPHKFKDVIGQNLIKQALINANLNNKTTHAYIFSGPRGIGKTSIARIFAASINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + C C C I+ +S + +E+D + G+D++R I +++ LP+ ++KV
Sbjct: 65 LKPNNGDCCEECSVCQSIINEQSVDLIELDAASNNGVDQMRNITDNINY-LPTLF-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + W A LK +EEPPQ V+FIF TT+ +P +I SRCQ+Y FN++ + +
Sbjct: 123 YIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFNRLNNSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ + ++ +E++ + +A++ + ADG+ RD ++LDQL K I L+N+ G+
Sbjct: 183 LQELIDLVAKKEDIKINENAINKLIQLADGAGRDCLSILDQLVTNQKVIDIDLINKTFGL 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K++ L+EL +D E K EL D G++ +Q+ ++++D + T +
Sbjct: 243 VDNSKVINLIELIQKNDLLELRKFIYELYDYGINLEAFCAQIINILIDYLVYQKTNDETN 302
Query: 760 LTEAELERLKHALKL 774
L + ++ LK L +
Sbjct: 303 LKKISIDELKKILSI 317
>gi|254462224|ref|ZP_05075640.1| DNA polymerase III, gamma and tau subunit [Rhodobacterales
bacterium HTCC2083]
gi|206678813|gb|EDZ43300.1| DNA polymerase III, gamma and tau subunit [Rhodobacteraceae
bacterium HTCC2083]
Length = 583
Score = 211 bits (538), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/292 (36%), Positives = 173/292 (59%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +L+GQ +V++L N RIA ++ G RGTGKT+TA+I + +N
Sbjct: 10 RVLARKYRPETFADLVGQEAMVRTLKNAFEADRIAQAFVMTGIRGTGKTTTARIIAKGIN 69
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T+PCG C C + G+ + ME+D ++ G+ +R I++ S +A
Sbjct: 70 CIGPDGTGGPTTEPCGVCENCVAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVHYRAA 127
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 128 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLR 187
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ D++ L++I+A E+ + DAL LI A+GS RDA ++LDQ +S T
Sbjct: 188 RIEPEDMIGMLQRIAAGEHAEIAEDALALITRAAEGSARDATSLLDQAISHGAGETTVEQ 247
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ M D A + E +G DPM ++ LA +
Sbjct: 248 VRAMLGLADRGRVLDLYQMIMRGDAAAALTELGEQYAAGADPMAVLRDLAEI 299
>gi|428321082|ref|YP_007151164.1| DNA polymerase III subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
gi|428244751|gb|AFZ10536.1| DNA polymerase III, subunits gamma and tau [Oscillatoria
nigro-viridis PCC 7112]
Length = 514
Score = 211 bits (538), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 181/295 (61%), Gaps = 4/295 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L QKY+P EL GQ + ++L N + +IAP YLF G RGTGKTSTA+I + +LNC
Sbjct: 49 ALPQKYRPRSLSELAGQEYIQRTLSNAVKTNKIAPAYLFAGERGTGKTSTARILAKSLNC 108
Query: 520 VATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ D+ KPCG C+ C G S + E+D + G+D R +++ S P+ S R+
Sbjct: 109 TSADKPTVKPCGKCQSCRSIEKGSSLDVAEIDAASHNGVDDARGLIER-SHFAPAIS-RY 166
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DE H L S+ + A LK LEEPP VVFI TT+ V +I SRCQ +LF +
Sbjct: 167 RVFILDEVHCLSSQAFNALLKCLEEPPHHVVFILCTTEQHKVLPTINSRCQTFLFRSLPI 226
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
IV +L ++ +E++ + +A IA A+G +RDA +LDQLSLLG+ ITSS V EL
Sbjct: 227 PAIVKQLTMVAQKESIAIAEEAKIAIARAANGGMRDALQLLDQLSLLGEEITSSHVLELS 286
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
G + E L+ +L+ A + + + ++ +REL+DSG P +L++ L + D++ T
Sbjct: 287 GRIPESDLIAILKSARTGNALKLLQLSRELIDSGKSPKMLLASLLACYRDLLLAT 341
>gi|260427427|ref|ZP_05781406.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
gi|260421919|gb|EEX15170.1| DNA polymerase III subunit tau [Citreicella sp. SE45]
Length = 588
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N GRIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 11 LARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 70
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D + G+ +R I+ S +AS
Sbjct: 71 GPDGEGGPTTEPCGVCEHCKAIMEGRHVDVMEMDAASNTGVGDIREIID--SVHYRAASA 128
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 129 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 188
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LRKI++ E+ + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 189 EPEVMIALLRKIASSESAEITDDALALITRAAEGSARDATSLLDQAISHGAGETTAEQVR 248
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D + E G DP+ ++ LA L
Sbjct: 249 AMLGLADRGRVMDLFEKIMRGDAPGALTELSEQYADGADPLAVLRDLAEL 298
>gi|297621642|ref|YP_003709779.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila
WSU 86-1044]
gi|297376943|gb|ADI38773.1| DNA polymerase III, gamma and tau subunits [Waddlia chondrophila
WSU 86-1044]
gi|337293115|emb|CCB91108.1| DNA polymerase III subunit gamma/tau [Waddlia chondrophila 2032/99]
Length = 452
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 178/293 (60%), Gaps = 5/293 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E++GQ+ +V +L N I + R+A YLF G RGTGKT+ A++F+ ALNC
Sbjct: 7 LARKYRPQTFREVLGQDAIVATLKNGIKKRRMAHAYLFSGSRGTGKTTLARLFAKALNCQ 66
Query: 521 A-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
A ++ +PC C C + +G S + +EVDG + +G+D +R I + + G +AS R+K+
Sbjct: 67 APSNDCEPCNACSSCKEIAAGSSLDVLEVDGASNRGIDDIRQI--NETVGYSTASGRYKI 124
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP++V F F TT+ V +I SRCQ++ N+I
Sbjct: 125 YIIDEVHMLTKEAFNALLKTLEEPPEKVKFFFATTEPHKVLPTILSRCQRFNLNRIPQDS 184
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I+ +L++++ E+ + DAL L+A ADG LRDAE++LDQ+ G I S +++
Sbjct: 185 IIGKLKRMTEEQGFQADEDALRLVANRADGGLRDAESLLDQILSFHEGGIIDSQSAAKIL 244
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
GV+ +E L + A + AE + A E+ G D + L+ +I+
Sbjct: 245 GVMPQETFFRLDKAAQICNFAEAFEIAEEIFSEGKDLTHFVEMLSEHFRNILV 297
>gi|123967081|ref|YP_001012162.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
gi|123201447|gb|ABM73055.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9515]
Length = 595
Score = 211 bits (537), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 117/296 (39%), Positives = 178/296 (60%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPSNLDELVGQEFISITLKQALISKKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C++ +Q PCG C C G + + +E+D + G+D +R I+ A R
Sbjct: 66 CLSCEQPTANPCGKCELCKQIADGNALDIIEIDAASNTGVDNIREIID--GARFTPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP+RVVFI TT+ + V +IQSRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
I L +I+ +E++ E AL LIA ++G +RDA+++LDQLSLL +T+ V L
Sbjct: 184 SNTIFHNLSEIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE L+ L+ + ++ + +L DSG +P ++ L ++ D++ T
Sbjct: 244 LGEVSENDLINLINALIYNEPESLLISCNQLYDSGNEPHEILVGLLNITRDLLLKT 299
>gi|357058057|ref|ZP_09118913.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
gi|355374364|gb|EHG21660.1| hypothetical protein HMPREF9334_00630 [Selenomonas infelix ATCC
43532]
Length = 618
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 116/308 (37%), Positives = 182/308 (59%), Gaps = 8/308 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + +L ++ G+ + YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPETFADLVGQEHISHTLARAVTMGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V PCG C C G S + E+D + +G+D +R + + S A+ +K+
Sbjct: 65 VEGPTLTPCGVCDSCRSINDGSSMDVFEIDAASNRGIDEIRDLRE--SVKFAPAAGHYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP +V+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPQVLFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI-TSSLVNELVG 698
I RL + E + + DAL +IA+ ADG +RDA ++LDQ + L + + T+ V E +G
Sbjct: 183 IRDRLTYVCQESGITADADALGIIAVQADGGMRDALSILDQCTALAEGVLTAERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGTYTIGG 757
+V +L E D A V + EL+ +G + ++++LA + IAG +GG
Sbjct: 243 LVGNAWTQKLAEQIAERDAAGLVTQLGELLQNGRELKQILAELAQYFRSLMIAG---VGG 299
Query: 758 RSLTEAEL 765
+L+ AEL
Sbjct: 300 -ALSAAEL 306
>gi|323701680|ref|ZP_08113352.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
nigrificans DSM 574]
gi|333922265|ref|YP_004495845.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
carboxydivorans CO-1-SRB]
gi|323533453|gb|EGB23320.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
nigrificans DSM 574]
gi|333747826|gb|AEF92933.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 542
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 124/367 (33%), Positives = 210/367 (57%), Gaps = 13/367 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ + ++L N + GR+A YLF GPRGTGKT+TAK+ + ALN
Sbjct: 4 KALYRTWRPQNFKDIVGQQHITRTLQNALVNGRVAHAYLFCGPRGTGKTTTAKVLAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + +E+D + +G+D +R L+ PS R K
Sbjct: 64 CLRGVDGEPCNECENCRAVNEGSAVDVVEIDAASNRGIDEIRD-LREKVKFTPSMG-RRK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F +IK
Sbjct: 122 VYIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRCQRFDFRRIKPE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
++V RL++++A + VE +AL LIA A+G LRDA ++LDQ + K ++ + ++ ++
Sbjct: 182 EMVQRLKEVAAGSGIEVEEEALWLIAKAAEGGLRDALSILDQAAAFAAKTVSPADIHSIL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--I 755
G V +E L + + + TAE ++ E+ D G D + +L S + + + +
Sbjct: 242 GTVQQEVLANMTQYLVQGKTAEALRLISEISDRGKDLRLFTKELTSYLRERLLESMEQRQ 301
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRR 815
++ EA L L L++L +AE++++ SS+ + +L+L + + +GS
Sbjct: 302 PAANINEATLYNL---LQILVQAEQEMKWSSQ-----PSLVLELAVVKASRPELAGSLEA 353
Query: 816 QSSRTTE 822
SSR E
Sbjct: 354 LSSRVAE 360
>gi|218442574|ref|YP_002380895.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
gi|218175345|gb|ACK74076.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 452
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 167/287 (58%), Gaps = 4/287 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + KY+P ++LIGQN + +L N I+ +IAP YLF G RGTGKTST +I + +
Sbjct: 2 NYQPFHHKYRPQTLNDLIGQNAIATTLTNAITLSKIAPAYLFTGSRGTGKTSTGRILAKS 61
Query: 517 LNCVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNCV ++ PCG C C +G S + +E+D + + +R I+ S
Sbjct: 62 LNCVKDNKPTVTPCGECNSCKSIANGSSLDVIELDAASNNSAEGIRDIVS--STQFAPIG 119
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+++IDE H L S LK LEEPP V+FI TTD + +I SRCQ++ F +
Sbjct: 120 RRYKIWIIDEAHALSSAATQVLLKTLEEPPINVIFILCTTDPSKLGDTIISRCQRFNFKR 179
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
+ IV +L I+ E++N+ +AL LIA ++ G +RDA +L+Q+SLL +T V+
Sbjct: 180 FNNDVIVNQLEAIAQSEDINISYEALLLIAKHSQGGMRDATCLLEQVSLLSDNVTPVEVH 239
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
+L+G +SE+ L ELL S T ++ ++L G DP+V++ QL
Sbjct: 240 QLLGTISEDNLFELLNAIALSKTEPIIRIIKQLYADGKDPLVILQQL 286
>gi|218848112|ref|YP_002454681.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
gi|218546243|gb|ACK98636.1| DNA polymerase III subunit gamma/tau [Bacillus cereus G9842]
Length = 548
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 206/360 (57%), Gaps = 19/360 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P F ELIGQN + Q++ N + + + Y+F GPRGTGKT+ AK+ + +LN
Sbjct: 3 QALYRKYRPTNFSELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLN 62
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C + ++ +PC C +C + +E+D + G++++R I + ++ + ++
Sbjct: 63 CESLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYA--PGTGKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP+ V+FI TTD+ +P +I SRCQ++ F +I
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNE 695
DI+ RLR ++ +E + +E DAL L+ + A G +RDA +++DQ + IT V+E
Sbjct: 181 RDIIERLRHVAIKEEVKIEEDALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSE 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-IIAGTYT 754
+VG +S EK+ + + +T E + +++ +G +P+ L+ L + D +I+ +
Sbjct: 241 VVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFE 300
Query: 755 IGGRSLT-------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ ++T E E+ +++ ++ L+E + +++ S+ L+QL +
Sbjct: 301 VKEDNITTAILNSKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQLAT 360
>gi|317472133|ref|ZP_07931465.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
gi|316900537|gb|EFV22519.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
Length = 532
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 205/380 (53%), Gaps = 22/380 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FDE+ GQ+ +V +L N + GRI YLF G RGTGKTS AK+ + A+NC
Sbjct: 5 ALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG C C + G S N ME+D + G+D +R I + + AS ++KV
Sbjct: 65 EHPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYS--PASGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 123 FIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITADV 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I RL ++ +EE++ E AL +A ADGS+RDA ++LDQ LGK++T V E++
Sbjct: 183 IADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAE-------TVKRARELMDSGVDPMVLMSQL-------AS 743
G V LL+ +++D E V++ REL D + + L AS
Sbjct: 243 GTVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITDFIWYLRNLLLAGKGDAS 302
Query: 744 L-IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +++ A ++ + E E + +++LS+ Q+R S+ + L++ M
Sbjct: 303 MEALEVSAEQLSLMQEKAAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEVALIK---M 359
Query: 803 HSPDLTQSGSSRRQSSRTTE 822
P + SS + R E
Sbjct: 360 CRPQMETDLSSVLERMRMLE 379
>gi|15606894|ref|NP_214275.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
gi|2984127|gb|AAC07663.1| DNA polymerase III gamma subunit [Aquifex aeolicus VF5]
Length = 473
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/278 (37%), Positives = 170/278 (61%), Gaps = 3/278 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++KY+P FF E+IGQ V+ L N I R+A YLF GPRG GKT+ A+I + A
Sbjct: 2 NYVPFARKYRPKFFREVIGQEAPVRILKNAIKNDRVAHAYLFAGPRGVGKTTIARILAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + +PCG C C + G + +E+D + +G+D VR + + + +
Sbjct: 62 LNCKNPSKGEPCGECENCREIDRGVFPDLIEMDAASNRGIDDVRALKE--AVNYKPIKGK 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP R VF+ TT+ D + +I SRCQ+ +F+K++
Sbjct: 120 YKVYIIDEAHMLTKEAFNALLKTLEEPPPRTVFVLCTTEYDKILPTILSRCQRIIFSKVR 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
++ L+KI +E + E AL+++A ++G +RDA ++LDQ S+ G+ R+T +V
Sbjct: 180 KEKVIEYLKKICEKEGIECEEGALEVLAHASEGCMRDAASLLDQASVYGEGRVTKEVVEN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+G++S+E + L+L ++S+ E +K REL + G +
Sbjct: 240 FLGILSQESVRSFLKLLLNSEVDEAIKFLRELSEKGYN 277
>gi|402309988|ref|ZP_10828957.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. AS15]
gi|400370051|gb|EJP23047.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. AS15]
Length = 538
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 33/382 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F+ +IGQ+ V L N I +I+ Y+F G RGTGKTSTAK+F+ +LNC
Sbjct: 4 ALYRKYRPDNFENIIGQSQVTDVLKNQIKENKISHAYVFSGTRGTGKTSTAKVFAKSLNC 63
Query: 520 VATDQ-TKPCGYCREC-NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
Q + PC +C C ND++ +E+D + +D +R LK PS R+
Sbjct: 64 QNYSQESAPCNHCESCKNDYVDT-----IEIDAASNNSVDNIR-ALKDNIIYRPSFG-RY 116
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + A LK LEEPP+ V+FI TT+I+ +P +I SRCQK+ F K+
Sbjct: 117 KVYIIDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSRCQKFEFKKVSV 176
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI ARL+ I EN+ + A+D IA +DG LRDA + LDQ++ LG RI+ ++ +
Sbjct: 177 EDIKARLKFIVENENIPYDVYAIDYIATMSDGGLRDAISTLDQVASLG-RISMENLDFVT 235
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+ S K+ E L+ + DT ++K E+ VD L SQ+ S ++DII
Sbjct: 236 GMTSIVKIDEYLKSVFTKDTFASLKTVNEMTADNVDIKKLPSQIISRLLDIIYLQ----- 290
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-------PD-LTQ 809
++K +K+L E+ L++S + + ++++ + S PD L Q
Sbjct: 291 --------NKVKADVKMLEGLEELLKISKDE--DISNLIVEISELESNMKYASFPDILFQ 340
Query: 810 SGSSRRQSSRTTEEDPSSTSRE 831
S + ++ S T+ +D S+ +E
Sbjct: 341 SFTVKKCQSITSNQDVSALVKE 362
>gi|167748328|ref|ZP_02420455.1| hypothetical protein ANACAC_03072 [Anaerostipes caccae DSM 14662]
gi|167652320|gb|EDR96449.1| DNA polymerase III, subunit gamma and tau [Anaerostipes caccae DSM
14662]
Length = 529
Score = 211 bits (536), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 131/380 (34%), Positives = 205/380 (53%), Gaps = 22/380 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FDE+ GQ+ +V +L N + GRI YLF G RGTGKTS AK+ + A+NC
Sbjct: 2 ALYRKFRPSAFDEVKGQDHIVTTLKNQLEAGRIGHAYLFCGTRGTGKTSVAKLLAKAVNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG C C + G S N ME+D + G+D +R I + + AS ++KV
Sbjct: 62 EHPEDGNPCGVCESCREIQEGSSMNVMEIDAASNNGVDNIRDIKEQVQYS--PASGKYKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 120 FIIDEVHMLSMGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITADV 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I RL ++ +EE++ E AL +A ADGS+RDA ++LDQ LGK++T V E++
Sbjct: 180 IADRLMELMSEEHVEAEEKALRYVARMADGSMRDALSLLDQCIAFYLGKKLTYENVLEVL 239
Query: 698 GVVSEEKLLELLELAMSSDTAE-------TVKRARELMDSGVDPMVLMSQL-------AS 743
G V LL+ +++D E V++ REL D + + L AS
Sbjct: 240 GTVDISVYARLLDSILANDVTEVIGIVGKVVEQGRELSQFITDFIWYLRNLLLAGKGDAS 299
Query: 744 L-IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +++ A ++ + E E + +++LS+ Q+R S+ + L++ M
Sbjct: 300 MEALEVSAEQLSLMQEKTAQVEEETVIRYIRILSDLLNQIRFSTSKRVLAEVALIK---M 356
Query: 803 HSPDLTQSGSSRRQSSRTTE 822
P + SS + R E
Sbjct: 357 CRPQMETDLSSVLERMRMLE 376
>gi|295694719|ref|YP_003587957.1| DNA polymerase III subunits gamma and tau [Kyrpidia tusciae DSM
2912]
gi|295410321|gb|ADG04813.1| DNA polymerase III, subunits gamma and tau [Kyrpidia tusciae DSM
2912]
Length = 664
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/291 (38%), Positives = 167/291 (57%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ +V++L N + GR+A YLF GPRGTGKTS AKI + A+NC
Sbjct: 5 ALYREWRPQLFADVVGQPHIVRTLQNALRNGRLAHAYLFTGPRGTGKTSVAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C + G + +E+D + +G+D VR + + R KV
Sbjct: 65 EQGSGEEPCNQCNACRGIMDGSVLDVVEIDAASNRGIDEVRELRDQVRYA--PTQVRHKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ V+FI TT+ VP +I SRCQ++ F +I GD
Sbjct: 123 YIIDEVHMLTPEAFNALLKTLEEPPEHVIFILATTEPHKVPATIMSRCQRFAFQRIYAGD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+ R++ I A + E AL LIA ADG LRDA +MLDQ LS + V L+G
Sbjct: 183 MAERMKSILAHKGRQAEDKALWLIARAADGGLRDALSMLDQALSFSDDVLREEDVLALLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ E L+ +E + TA+ + ARE +D G D L+S L + D++
Sbjct: 243 RLPERALMSGVEALAAGRTADVLIWAREQLDHGFDVGPLVSTLLDALRDML 293
>gi|422344456|ref|ZP_16425382.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
gi|355377367|gb|EHG24592.1| hypothetical protein HMPREF9432_01442 [Selenomonas noxia F0398]
Length = 611
Score = 210 bits (535), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 196/343 (57%), Gaps = 17/343 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPESFADLVGQEHISRTLSRAVASGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R + + + P+A +K+
Sbjct: 65 AEGPTLTPCGVCESCRSISDGSSMDVFEIDAASNRGIDEIRDLRESVKFA-PTAG-HYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+RV+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPERVLFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + E DAL LIAL ADG +RDA ++LDQ + L + +T+ V E +G
Sbjct: 183 IRDRLLYVCRESGIAAEEDALGLIALQADGGMRDALSILDQCTALAEGPLTTERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGTYT 754
+V + ++ + D A + + EL+ +G + ++ +LA SL++ + GT +
Sbjct: 243 LVGHAWIEKMAMQIAACDAAGLIAQLGELLQNGSELKQILGELAQYFRSLMIVGVGGTVS 302
Query: 755 IGGRSLTEAEL----------ERLKHALKLLSEAEKQLRLSSE 787
+ ++ E++ L+ L+E ++LR S +
Sbjct: 303 AAEFCAEQEDVLREEAKRFTQEKIMTILRTLNETMQELRFSPQ 345
>gi|433444410|ref|ZP_20409324.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
gi|432001607|gb|ELK22481.1| DNA polymerase III, subunits gamma and tau [Anoxybacillus
flavithermus TNO-09.006]
Length = 559
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 121/356 (33%), Positives = 199/356 (55%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L + ++P F +++GQ V ++L N + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 RALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C ++G + +E+D + G+D +R I + P+++P +K
Sbjct: 64 CEHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFA-PTSAP-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F +I+
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV+RL+ + AEE ++VE +AL IA ADG +RDA ++LDQ +S R+ V +
Sbjct: 182 SIVSRLKTVVAEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G VS+ K+ +L+ T E ++ ++LM+ G DP L+ L D++
Sbjct: 242 GAVSQRKIADLIYAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQL 301
Query: 755 --IGGRSLTEAELERLK---------HALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ R L + L A+ LLS+++ +RL++ T+++L
Sbjct: 302 EDVTHRVLVDERFRELSDMIPTSFIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKL 357
>gi|86140173|ref|ZP_01058735.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
gi|85823110|gb|EAQ43323.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. MED193]
Length = 608
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 16 LARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFVMTGIRGTGKTTTARIIAKGMNCI 75
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 76 GPDGTGQPTTEPCGVCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVQYRAASA 133
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ+Y +I
Sbjct: 134 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRYDLRRI 193
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A +RKI+ E + DAL LI A+GS+RDA ++LDQ +S T+ V
Sbjct: 194 EPEVMIALMRKIATAEGAEITEDALALITRAAEGSVRDATSLLDQAISHGAGETTADQVR 253
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 254 AMLGLADRGRVLDLMDMVLRGDAAGALTELSAQYAEGADPLAVLRDLAEI 303
>gi|436735979|ref|YP_007318107.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
gi|428267580|gb|AFZ33524.1| DNA polymerase III, subunits gamma and tau [Gloeocapsa sp. PCC
7428]
Length = 466
Score = 210 bits (535), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 127/358 (35%), Positives = 199/358 (55%), Gaps = 18/358 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L Y+P ++L+GQ V +L N I+ +IAP YLF GPRGTGKTSTA+IF+ +LNC
Sbjct: 4 ALHLAYRPKTLEDLVGQPYVKATLANAITNRQIAPAYLFTGPRGTGKTSTARIFAKSLNC 63
Query: 520 VATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ + + PCG C+ C S S + E+D + G+D R +++ S+ P A R+
Sbjct: 64 LESKKPTINPCGQCQSCRSIESSSSLDVSEIDAASHNGVDDARELVER-SSFAPVAG-RY 121
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
++F++DECH L +++ A LK +EEPP VVF+ TT++ V +I SR Q++ F +
Sbjct: 122 RIFILDECHQLTTQSQNALLKCIEEPPAHVVFVLCTTEVHKVLPTIISRTQRFEFRALSI 181
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
G I +LRK++ E + + DAL IA +G LRDA +L Q+ LLG+ +T++ V E+
Sbjct: 182 GTITTQLRKVAVSEEIAIGDDALLAIARIVNGGLRDALQLLSQVRLLGEGVTANQVIEMA 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G +E +LL ++E + +T + ++ AREL+D+G P ++++ L D++
Sbjct: 242 GGTTESELLAIVEAIAAGNTLQLLQAARELVDAGKTPTLILNSLLQTSRDLLVLQSAPKE 301
Query: 758 RSLTEA--------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+SL + L L L +AE QLR S W LL L S
Sbjct: 302 QSLLTGVVSYHQLKSLAAKWSFDTLNLVLVQLHKAELQLRQSINAGVWLEVCLLNLMS 359
>gi|134297921|ref|YP_001111417.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
reducens MI-1]
gi|134050621|gb|ABO48592.1| DNA polymerase III, tau subunit [Desulfotomaculum reducens MI-1]
Length = 540
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/369 (32%), Positives = 211/369 (57%), Gaps = 19/369 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P +F +++GQ + ++L N + + ++A YLF GPRGTGKT+TAK+ + ALN
Sbjct: 4 KALYRTWRPQYFSDIVGQRHITRTLQNALLQDKVAHAYLFCGPRGTGKTTTAKVLAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G S + +E+D + +G+D +R + + + PS + K
Sbjct: 64 CLVPTSGEPCNDCENCRAVNEGNSVDVVEIDAASNRGIDEIRDLREKVKFA-PSTGEK-K 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F +IK
Sbjct: 122 VYIIDEVHMLTDQAFNALLKTLEEPPSHVVFVLATTEAHKVPVTILSRCQRFDFRRIKPD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
++V RL++++ N+ VE +AL LIA A+G LRDA ++LDQ + K +T+ ++ ++
Sbjct: 182 EMVGRLQEVAQGANIEVEEEALQLIAKAAEGGLRDALSILDQGAAFAEKTVTTEDIHSIL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV----LMSQLASLIMDIIAGTY 753
G V ++ L+++ E +K E+ + G D + + S L L+++ I G +
Sbjct: 242 GTVKQDILVKMTHCLAEGKAGEALKLVAEISNRGKDLRLFGREMTSFLRGLLVEGIEGRH 301
Query: 754 TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813
T G E L L++L +AE++++ SS+ A +L+L + + +G++
Sbjct: 302 TGIGN-------ETLFSILQVLVQAEQEMKWSSQ-----PALVLELALVKAARPEIAGTT 349
Query: 814 RRQSSRTTE 822
S R E
Sbjct: 350 EALSRRVAE 358
>gi|302872970|ref|YP_003841603.1| DNA polymerase III subunits gamma and tau [Clostridium
cellulovorans 743B]
gi|307686515|ref|ZP_07628961.1| DNA polymerase III subunits gamma and tau [Clostridium
cellulovorans 743B]
gi|302575827|gb|ADL49839.1| DNA polymerase III, subunits gamma and tau [Clostridium
cellulovorans 743B]
Length = 539
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 198/358 (55%), Gaps = 20/358 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F E++GQ+ V +L N + RIA YL G RGTGKTSTAKI S A+N
Sbjct: 4 KALYREWRPRNFGEVVGQSQVTVTLKNQVKNNRIAHAYLLCGTRGTGKTSTAKILSKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I++ + P +FK
Sbjct: 64 CLNPIDGEPCNECEMCKKINEGIAIDVTEMDAASHNGVDDIRNIIEDVQ--YPPQEAKFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L AFLK LEEPP+RV+FI TTD +P +I SRCQ+Y F +I++
Sbjct: 122 VYIIDEVHMLTMGAVNAFLKTLEEPPKRVLFILATTDPQKLPITILSRCQRYDFKRIRNV 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITS--SLVNEL 696
DI ARLR I +N+ + AL IA DG+LRDA ++LDQ +G + + ++N +
Sbjct: 182 DIQARLRSIVDNKNIEADDLALSFIARICDGALRDAVSILDQSIAMGNGVVNYDDVIN-I 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G+V+ E LL L E + D + + +++ SG D + + +L + + +++ T
Sbjct: 241 LGIVTNEHLLRLTECIIEKDIGKAIHVVDDVIYSGKDVNLFVKELVTHMRNLLMVKVTEN 300
Query: 757 GRSLTEAELERLKHA---------------LKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ + +E + H + +L E+E+Q++ S + + ++++
Sbjct: 301 PEEVLDMSMENIAHVKEQSSKIRVEEIMRHINILQESEEQMKWSKQSRIYLELAIIKM 358
>gi|434389609|ref|YP_007100220.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
gi|428020599|gb|AFY96693.1| DNA polymerase III, subunit gamma/tau [Chamaesiphon minutus PCC
6605]
Length = 706
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 203/356 (57%), Gaps = 19/356 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F +L+GQ + +L N + +IAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFADLVGQEAISTTLTNALRLEKIAPAYLFTGPRGTGKTSSARILAKSLNCM 65
Query: 521 ATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
A+D +PCG C C+ G + + +E+D + G+D +R +++ A R+K
Sbjct: 66 ASDVPTAQPCGKCETCSAIAVGAALDIIEIDAASNTGVDNIRELIER--AQYAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDECH+L + + + LK LEEPP RVVF+ TTD V +I SRCQ++ + +I
Sbjct: 124 VYIIDECHMLTTAAFNSLLKTLEEPPDRVVFVLATTDPQRVLPTIISRCQRFDYRRIPVE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ E++ ++ ++ LIA A G LRDAE++LD+LSLL IT V + +G
Sbjct: 184 AMVKHLTYIAGNESIEIDAASIKLIAQIAQGGLRDAESLLDRLSLLSGEITPDRVYDAIG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGT----- 752
V E LL++L+ +D + + R R++++ G +P+ ++ LA D+ IA T
Sbjct: 244 SVPERDLLDILQSIDRADPEQLLDRTRQILERGKEPLTVLQNLAGCYRDLTIAKTAPQRA 303
Query: 753 --YTIGGRSLTEA-------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ S TE +L ++ K L ++E QL+ +++ W +L L
Sbjct: 304 DLVALTSESWTELAKIAKTWQLSQILTGQKHLKDSEIQLKHTTQPQLWLEIAILGL 359
>gi|339501824|ref|YP_004689244.1| DNA polymerase III subunit tau [Roseobacter litoralis Och 149]
gi|338755817|gb|AEI92281.1| DNA polymerase III subunit tau [Roseobacter litoralis Och 149]
Length = 584
Score = 210 bits (534), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +VQ+L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D + G+ +R I+ S +AS
Sbjct: 72 GPDGTSGPTTEPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ +RKI+ E + DA+ LIA A+GS RDA ++LDQ +S T++ V
Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAISHGAGETTAAQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + DTA + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDLAEI 299
>gi|400755669|ref|YP_006564037.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis 2.10]
gi|398654822|gb|AFO88792.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis 2.10]
Length = 611
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 172/290 (59%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 23 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 82
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 83 GEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVQYRAASA 140
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 141 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 200
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A L+KI+ EN + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 201 EPEVMIALLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 260
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 261 AMLGLADRGRVLDLIDMILRGDAASALTELSAQYAEGADPLAVLRDLAEI 310
>gi|332185894|ref|ZP_08387641.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
gi|332014252|gb|EGI56310.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. S17]
Length = 559
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 172/302 (56%), Gaps = 11/302 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E R L++KY+P F LIGQ+ +VQ+L N I R R+A +L G RG GKTSTA++ +
Sbjct: 17 EAYRVLARKYRPQTFAALIGQDAMVQTLGNAIKRDRLAHAFLMTGVRGVGKTSTARLIAK 76
Query: 516 ALNCVATDQT-----KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNCV D T +PCG C C G+ + +E+D + G+D VR I++ ++
Sbjct: 77 ALNCVGPDGTGGPTIQPCGQCEPCRAIAEGRHIDVIEMDAASHTGVDDVREIIE--ASRY 134
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+ S RFK++++DE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 135 AAVSARFKIYIVDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRF 194
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ----LSLLGK 686
+I + A I +E + E +AL L+A A+GS RD ++LDQ L G
Sbjct: 195 DLRRITADKLAAHFADICVKEGVTAEDEALMLVARAAEGSARDGLSILDQAIAHADLEGG 254
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
+T+S V E++G+ + +LL L ++ D A + R D GVDP ++ L +
Sbjct: 255 GVTASAVREMLGLSDRGAVRDLLGLVLNGDGAGALASLRRQYDYGVDPQSVLRSLLETVH 314
Query: 747 DI 748
I
Sbjct: 315 GI 316
>gi|291278574|ref|YP_003495409.1| DNA polymerase III gamma/tau subunits [Deferribacter desulfuricans
SSM1]
gi|290753276|dbj|BAI79653.1| DNA polymerase III, gamma/tau subunits [Deferribacter desulfuricans
SSM1]
Length = 526
Score = 209 bits (533), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 110/287 (38%), Positives = 176/287 (61%), Gaps = 5/287 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++KY+P FDE++ Q+ +V++L N I RI+ YLF GPRG GKTSTA+IF+ ALNC
Sbjct: 5 ALARKYRPQSFDEIVYQDYIVKTLKNAIELNRISHAYLFTGPRGIGKTSTARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
++ + PC C C + +G S + E+DG + +G+D +R L+ LP+ S ++K+
Sbjct: 65 LSPEGVNPCNKCENCVEVTNGTSLDVYEIDGASNRGIDEIRQ-LRESVKFLPTKS-KYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FIF TTD +P +I SRCQ++ F+KI D
Sbjct: 123 YIIDEVHMLTEAAFNALLKTLEEPPSYVIFIFATTDAHRIPATILSRCQRFNFSKIPDLK 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
++ +R I EN+ E DA++LI N+DG +RD +++DQ ++ G ++ L+G
Sbjct: 183 LIEHIRSILERENIEYEEDAVNLIVRNSDGCVRDCLSLIDQVIAYTGGKVFLDDTKYLLG 242
Query: 699 VVSEEKLL-ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+SE+K++ EL E + D + E+ G+D ++ + S
Sbjct: 243 -LSEDKIINELFEKIILKDNDSIKQLLSEIDLKGLDYKYVVEKFLSF 288
>gi|212637866|ref|YP_002314386.1| DNA polymerase III subunits gamma and tau [Anoxybacillus
flavithermus WK1]
gi|212559346|gb|ACJ32401.1| DNA polymerase III tau subunit [Anoxybacillus flavithermus WK1]
Length = 559
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 198/356 (55%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L + ++P F +++GQ V ++L N + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 RALYRVFRPQSFKDVVGQEHVTKTLQNALLQQKISHAYLFSGPRGTGKTSIAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C ++G + +E+D + G+D +R I + P+++P +K
Sbjct: 64 CEHRPTAEPCNECPTCLGIMNGSISDVLEIDAASNNGVDEIRDIRDKVKFA-PTSAP-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F +I+
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIVSRCQRFDFRRIELK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV+RL+ + EE ++VE +AL IA ADG +RDA ++LDQ +S R+ V +
Sbjct: 182 SIVSRLKTVVTEEGIDVEEEALFAIARAADGGMRDALSLLDQAISFSDDRVLLEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G VS+ K+ +L+ T E ++ ++LM+ G DP L+ L D++
Sbjct: 242 GAVSQRKIADLIHAMYEKKTVEALRLFQDLMEQGKDPNRLVEDLIYYYRDMLLYKAAPQL 301
Query: 755 --IGGRSLTEAELERLK---------HALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ R L + L A+ LLS+++ +RL++ T+++L
Sbjct: 302 EDVTHRMLVDERFRELSDMIPTSFIYEAIDLLSKSQHDMRLTNHPRIHMEVTIVKL 357
>gi|338814087|ref|ZP_08626137.1| DNA polymerase III subunits gamma and tau [Acetonema longum DSM
6540]
gi|337273949|gb|EGO62536.1| DNA polymerase III subunits gamma and tau [Acetonema longum DSM
6540]
Length = 560
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 112/303 (36%), Positives = 177/303 (58%), Gaps = 7/303 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F L+GQ + Q+L N I+ G+IA YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRQWRPQDFSSLVGQEHISQTLSNAITTGKIAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V PC +C C G S + EVD + +G+D +R + + + R+KV
Sbjct: 65 VEGPTPTPCNHCANCEKITQGSSMDVYEVDAASNRGIDEIRDLRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVF+ TT+ +P +I SRCQ+Y F +I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFVLATTEPHKIPATIHSRCQRYDFRRIGVEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I +RL +++ L++ P+AL LIA+ ADG +RDA ++LDQ + L +T + V +L+G
Sbjct: 183 IESRLSEVAKGSALHITPEALRLIAIQADGGMRDALSILDQCAALETGEVTGADVRKLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGTYT 754
++ E + + + D + E+++ G D ++ +LA SL++ + A
Sbjct: 243 MIGHEWVHRITVAIAARDAKAALTALDEMINLGKDVRQILLELAQHGRSLMLLLAAPDIE 302
Query: 755 IGG 757
I G
Sbjct: 303 IAG 305
>gi|323487365|ref|ZP_08092664.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
WAL-14163]
gi|323694200|ref|ZP_08108376.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|355629216|ref|ZP_09050274.1| hypothetical protein HMPREF1020_04353 [Clostridium sp. 7_3_54FAA]
gi|323399326|gb|EGA91725.1| hypothetical protein HMPREF9474_04415 [Clostridium symbiosum
WAL-14163]
gi|323501673|gb|EGB17559.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
gi|354819234|gb|EHF03682.1| hypothetical protein HMPREF1020_04353 [Clostridium sp. 7_3_54FAA]
Length = 536
Score = 209 bits (533), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 120/346 (34%), Positives = 188/346 (54%), Gaps = 19/346 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P+ FDE+ GQ+ +V++L N I+ GRI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPVSFDEVKGQDHIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG C C S S N +E+D + G++ +R I + P R++V
Sbjct: 65 ESPVDGSPCGECSMCRQIASSASLNVVEIDAASNNGVENIRDIRDQVQ--YPPTEGRYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL--LGKRITSSLVNELV 697
I ARL +++ E ++VE AL +A ADGS+RDA ++LDQ + G+++T V E++
Sbjct: 183 ISARLHELTQAEQIDVEERALRYVAKAADGSMRDALSLLDQCTAFHFGEKLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V L + DT + E++ G D +++ + +++ T
Sbjct: 243 GAVDNSVFSSLFRAVTAGDTKGCIYTIEEMIIQGRDLTQMVNDFVWYMRNLLVVKTTDDA 302
Query: 758 RSLT------------EAEL---ERLKHALKLLSEAEKQLRLSSER 788
+ EAEL + L +++ SE QLR +S++
Sbjct: 303 EDMLDMSSENIAILKEEAELTDSDTLMRFIRIFSELSGQLRYASQK 348
>gi|171920146|ref|ZP_02690996.2| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|186701643|ref|ZP_02971345.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 6 str. ATCC 27818]
gi|171902514|gb|EDT48803.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 1 str. ATCC 27813]
gi|186700883|gb|EDU19165.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 6 str. ATCC 27818]
Length = 597
Score = 209 bits (532), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 188/313 (60%), Gaps = 2/313 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +IGQ+++ Q+L+N +I Y+F GPRG GKTS A+IF++++NC
Sbjct: 5 TLYRKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ ++ CG C C + +S + +E+D + G+D++R I +++ LP+ ++KV
Sbjct: 65 LNPNKGDCCGKCSVCESILKEQSVDLIELDAASNNGVDQIRIITDNINY-LPTFF-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + W A LK +EEPPQ V+FIF TT+ +P +I SRCQ+Y F ++ + +
Sbjct: 123 YIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ + I +E++ ++ +A+D + ADGS RD ++LDQL+ + K I L+N+ G+
Sbjct: 183 LQELIDSILTKEDIKIDNNAIDKLIQLADGSGRDCLSILDQLTTVKKNIDLDLINKTFGL 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K++ L+EL +D + EL + GV+ Q+ ++++D + T +
Sbjct: 243 VDNFKVISLIELIQKNDILLLREFIYELYNQGVNLEAFCVQIINVLIDYLIYLKTNDINN 302
Query: 760 LTEAELERLKHAL 772
L + ++ LK L
Sbjct: 303 LKKVSVDELKKML 315
>gi|13357643|ref|NP_077917.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 700970]
gi|170762399|ref|YP_001752167.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|183508454|ref|ZP_02957993.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 14 str. ATCC 33697]
gi|11356842|pir||F82935 DNA polymerase III gamma-tau subunits UU087 [imported] - Ureaplasma
urealyticum
gi|6899039|gb|AAF30492.1|AE002108_5 DNA polymerase III gamma-tau subunit [Ureaplasma parvum serovar 3
str. ATCC 700970]
gi|168827976|gb|ACA33238.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 3 str. ATCC 27815]
gi|182675865|gb|EDT87770.1| DNA polymerase III subunits gamma and tau [Ureaplasma parvum
serovar 14 str. ATCC 33697]
Length = 597
Score = 209 bits (532), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 106/313 (33%), Positives = 188/313 (60%), Gaps = 2/313 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +IGQ+++ Q+L+N +I Y+F GPRG GKTS A+IF++++NC
Sbjct: 5 TLYRKYRPHKFKNVIGQDLIKQALMNACLNNKITHAYIFSGPRGIGKTSIARIFASSINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ ++ CG C C + +S + +E+D + G+D++R I +++ LP+ ++KV
Sbjct: 65 LNPNKGDCCGKCSVCESILKEQSVDLIELDAASNNGVDQIRIITDNINY-LPTFF-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + W A LK +EEPPQ V+FIF TT+ +P +I SRCQ+Y F ++ + +
Sbjct: 123 YIIDEAHMLSTSAWNALLKTVEEPPQHVIFIFATTEYQKIPLTIISRCQRYDFKRLNNSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ + I +E++ ++ +A+D + ADGS RD ++LDQL+ + K I L+N+ G+
Sbjct: 183 LQELIDSILTKEDIKIDNNAIDKLIQLADGSGRDCLSILDQLTTVKKNIDLDLINKTFGL 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V K++ L+EL +D + EL + GV+ Q+ ++++D + T +
Sbjct: 243 VDNFKVISLIELIQKNDILLLREFIYELYNQGVNLEAFCVQIINVLIDYLIYLKTNDINN 302
Query: 760 LTEAELERLKHAL 772
L + ++ LK L
Sbjct: 303 LKKVSVDELKKML 315
>gi|407001558|gb|EKE18522.1| hypothetical protein ACD_9C00308G0001, partial [uncultured
bacterium]
Length = 249
Score = 209 bits (532), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 99/247 (40%), Positives = 157/247 (63%), Gaps = 3/247 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P+ F ++IGQ +VQ+L N I R+ YLF GPRGTGKT+ A+IF+ A+NC
Sbjct: 4 ALYRKYRPLTFSDVIGQGHIVQTLSNAILNNRVGHAYLFTGPRGTGKTTMARIFARAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + G S + E+D + G+D +R + +++ P + +FKV
Sbjct: 64 QNPKGADPCLECDVCKNITQGMSLDIFEIDAASNTGVDNIRELRENVK--FPPSQAKFKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y F ++
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEIHKVPETIISRCQRYDFTRLSLEH 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ +L I+ EN+++E +AL++IA+ ++G +RDAE++L Q ++L K+IT+ V E++G
Sbjct: 182 IIEKLSTIAKNENVSIEKNALEMIAIASEGGMRDAESLLSQVMALEDKKITAKEVEEILG 241
Query: 699 VVSEEKL 705
+ L
Sbjct: 242 TTQRQSL 248
>gi|110678389|ref|YP_681396.1| DNA polymerase III subunits gamma and tau [Roseobacter
denitrificans OCh 114]
gi|109454505|gb|ABG30710.1| DNA polymerase III, tau subunit [Roseobacter denitrificans OCh 114]
Length = 582
Score = 209 bits (532), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +VQ+L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVQTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D + G+ +R I+ S +AS
Sbjct: 72 GPDGTGRPTTDPCGTCEHCTAIMEGRHVDVMEMDAASNTGVANIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ +RKI+ E + DA+ LIA A+GS RDA ++LDQ +S T++ V
Sbjct: 190 EPEVMIDLMRKIATAEGAEIAQDAMALIARAAEGSARDATSLLDQAISHGAGETTAAQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + DTA + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILRGDTAGALTELSAQYAEGADPMAVLRDLAEI 299
>gi|428224128|ref|YP_007108225.1| DNA polymerase III subunit tau [Geitlerinema sp. PCC 7407]
gi|427984029|gb|AFY65173.1| DNA polymerase III, tau subunit [Geitlerinema sp. PCC 7407]
Length = 676
Score = 209 bits (532), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 200/357 (56%), Gaps = 21/357 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P F L+GQ+ + +L N I + RIAP YLF GPRGTGKTS+A+I + +LNC+
Sbjct: 6 LHHKYRPQTFRGLVGQDAIATTLGNAIRQRRIAPAYLFSGPRGTGKTSSARILAKSLNCI 65
Query: 521 ATDQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
D PCG C C G + + +E+D + G+D +R I++ A R+K
Sbjct: 66 KGDLPTEDPCGVCEVCRAIAQGSAMDVIEIDAASNTGVDNIREIIER--AQFAPVQCRYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+VIDECH+L + + A LK LEEPP VVF+ TTD V +I SRCQ++ F +I
Sbjct: 124 VYVIDECHMLSTAAFNALLKTLEEPPAHVVFVLATTDPQRVLPTIISRCQRFDFRRIPLE 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
+V L I+ +E+++V +A+ L+A + G LRDAE++LDQLSLL ++T V +LVG
Sbjct: 184 AMVGHLMAIAEKESIDVTEEAVRLVAQVSQGGLRDAESLLDQLSLLDGQVTVDRVWDLVG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V E LL L E + D + AR LMD G +P++++ LAS D++ T R
Sbjct: 244 AVPERDLLALAEAIAADDATRVLDDARHLMDRGREPLIVLQNLASFYRDLLIAK-TAPDR 302
Query: 759 ----SLTEAELERL------------KHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+LT +RL A + L +E Q++ +++ W TLL L
Sbjct: 303 PDLVALTPPTWQRLCAFVQSLDLGVILRAQQHLRASEGQVKNTTQPRLWLEVTLLGL 359
>gi|425737929|ref|ZP_18856199.1| DNA polymerase III subunits gamma and tau [Staphylococcus
massiliensis S46]
gi|425481082|gb|EKU48244.1| DNA polymerase III subunits gamma and tau [Staphylococcus
massiliensis S46]
Length = 564
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 138/482 (28%), Positives = 239/482 (49%), Gaps = 34/482 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMFRPQQFGDVVGQEHVTKTLQNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + +E+D + G+D +R I + PS S +FK
Sbjct: 64 CLNQSNGEPCNECDICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPEHAIFILATTEPHKIPPTIISRAQRFDFKAIGVE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RLR ++ E+ ++ E +AL IA ++G +RDA +++DQ G +T ++
Sbjct: 182 QIIERLRYVATEQGIDYEDEALAFIAKVSEGGMRDALSIMDQAIAFGDDHLTLKDALDVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G V EE L L + +S D + KR E + G + L++ + + D I T
Sbjct: 242 GSVDEEALNGLFKEVVSGDVKSSFKRYHEFVSEGKEVNRLINDMIYFVRDTIVSKTTEQE 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSR 814
+ +L EL L + ++++ +R S + L++L M + S ++
Sbjct: 302 LTYDALQSFELPTLYKMIDIINDTLVSIRFSVNQNVHLEVLLVKLSEMVKNEGATSSANN 361
Query: 815 RQSSRTTEEDPSSTSREAVVYKRMSGP-QYMPQNAVSP-ASLREPVNGNSRHLGEVLSRI 872
+ T +P +R +++ G + + +N V+P AS ++P G R S +
Sbjct: 362 QAEVVTQGSNPELEAR----IEQLEGTIKSLEENGVAPKASAKKPSKGAPR------SGV 411
Query: 873 DGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRNSEKLGEIWAQCIERCHSKTLKQ 932
N++S + +++ D + + L E W I SK LK
Sbjct: 412 KAKNAFSIQNIAKVLDKA----------------NKEDIKLLKERWHDVIGHAQSKDLKS 455
Query: 933 LL 934
L+
Sbjct: 456 LV 457
>gi|260655563|ref|ZP_05861051.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi
E3_33 E1]
gi|424845380|ref|ZP_18269991.1| DNA polymerase III, subunit gamma/tau [Jonquetella anthropi DSM
22815]
gi|260630011|gb|EEX48205.1| DNA polymerase III gamma and tau subunit [Jonquetella anthropi
E3_33 E1]
gi|363986818|gb|EHM13648.1| DNA polymerase III, subunit gamma/tau [Jonquetella anthropi DSM
22815]
Length = 648
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 114/311 (36%), Positives = 187/311 (60%), Gaps = 8/311 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL ++Y+P F +++GQ + V + ++S GRI YLF GPRG GKT+ A++ + A+N
Sbjct: 3 QSLYRRYRPQSFSDVVGQTVAVDVITRSLSSGRIGHAYLFSGPRGCGKTTVARLLAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C A + +PCG C+ C G+S + +E+DG + +D VR + ++ GL S +K
Sbjct: 63 CTARNGAEPCGQCQSCLAIRDGRSLDVVEIDGASNNTVDEVRELKANV--GLASFGGNWK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+RV+FI TT+ VP +I+SRCQ F+ +
Sbjct: 121 VYIIDEVHMLSASAFNALLKTLEEPPERVMFILATTEPHKVPATIRSRCQHIPFHGLSVP 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV++L+ ++A E L+ E +AL IA ++DG +RD ++L+Q ++L G +T + V++L
Sbjct: 181 DIVSQLKDVTAREGLSAESEALWEIARSSDGGMRDGLSLLEQVIALGGGSVTKAAVSQLT 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTY 753
G S E++ L L +D A +V ++ SG P L+S + S L + + G
Sbjct: 241 GGGSTEEIQSWLSLC-RTDPARSVSVLSDMFLSGALPERLVSNVFSSVRNLWLLVRWGQA 299
Query: 754 TIGGRSLTEAE 764
+ G + +E E
Sbjct: 300 GLAGTAFSEDE 310
>gi|91201430|emb|CAJ74490.1| similar to DNA polymerase III subunit gamma/tau [Candidatus
Kuenenia stuttgartiensis]
Length = 558
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 167/281 (59%), Gaps = 3/281 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++Y+P F +++GQ +V++L N I R+A YLF GPRG GKTSTA+I S ALNCV
Sbjct: 6 LARRYRPQTFSDIVGQAPIVKTLGNAIRTDRVAHAYLFAGPRGVGKTSTARILSKALNCV 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C G + +E+DG + +G+D +R I +++ G + R++++
Sbjct: 66 NGPTDTPCNVCNICQSISEGSDIDVLEIDGASNRGIDEIRNIRQNV--GFAPSRARYRIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT + +P ++QSRCQ++ F I DI
Sbjct: 124 IIDEVHMLTREAFNALLKTLEEPPSHVKFIFATTAANRLPETVQSRCQRFDFKNISVNDI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
L +I E +E AL IA A G LRD++++LDQL S +TS+ VN ++G
Sbjct: 184 EKHLLEICKTEGKQIESAALHTIAKYAKGGLRDSQSVLDQLFSFCDDNVTSADVNYVLGY 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ 740
+ ++K+ + E ++ DT+ ++ ++++ G P + Q
Sbjct: 244 IDDDKIYSMFECFVNKDTSGALRIVDDILNEGKTPAEFIDQ 284
>gi|225571144|ref|ZP_03780142.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
15053]
gi|225159975|gb|EEG72594.1| hypothetical protein CLOHYLEM_07232 [Clostridium hylemonae DSM
15053]
Length = 521
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 229/430 (53%), Gaps = 33/430 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 2 ALYRKFRPDEFEDVKGQDAIVKTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C SG S N +E+D + G+D +R I + + A P+ RFKV
Sbjct: 62 EHPVDGSPCGECAMCRTIASGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-RFKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 120 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIET 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I RLR++ +E +VE A+ IA ADGS+RDA ++LDQ + +G+R+T V E++
Sbjct: 180 ISGRLRELIEKEEWDVEEKAVRYIARMADGSMRDALSLLDQCAAFYIGERLTYDHVLEVL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL + D + ++ EL+ G + +SQLA+ L++
Sbjct: 240 GAVDTEVFSRLLRELLDMDVHQVIETVEELVMQGRE----LSQLAADFTWYLRNLLLVKG 295
Query: 747 -DIIAGTYTIGGRSLT----EAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D + + +L EA++ + L +++ S+ QL+ ++++ TL++
Sbjct: 296 SDNMEDVLDVSTENLIQLKEEAQMIDNDTLIRYIRIFSDLTNQLKFATQKRVLLEVTLIK 355
Query: 799 L--GSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVY---KRMSGPQYMPQNAVSPAS 853
L +M + T R + + P++ +E VVY + P P+ + PA+
Sbjct: 356 LCRPAMETKPDTLLDRIRAIEKQLGQGLPAAEVKEKVVYVNADEAAQPAQKPKPQL-PAA 414
Query: 854 LREPVNGNSR 863
L E V ++
Sbjct: 415 LNEDVKAVAQ 424
>gi|218283247|ref|ZP_03489308.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
gi|218216002|gb|EEC89540.1| hypothetical protein EUBIFOR_01896 [Eubacterium biforme DSM 3989]
Length = 587
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 201/384 (52%), Gaps = 17/384 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P FDE++GQ ++Q+L N I + RIA YLF GPRGTGKTS AKIF+ LN
Sbjct: 4 QALYRKYRPSNFDEVVGQTHIIQTLKNAIIQNRIAHAYLFCGPRGTGKTSIAKIFAKTLN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + Q PCG C C +G + +E+D + G+D VR ++ + ++K
Sbjct: 64 CTNS-QDAPCGVCENCKMAANGSHPDIIEIDAASNNGVDEVRNLIDKVKYA--PMQGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H++ S + A LK +EEPP V+FIF TT+ + V +I SRCQ++ FNK+
Sbjct: 121 IYIIDEVHMMTSGAFNALLKTIEEPPAHVIFIFATTEPNKVLPTIISRCQRFDFNKVSVN 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI RL + E + ++ D L LIA ADG +RDA ++LDQ ++ I + + ++
Sbjct: 181 DIKYRLSVVCKNEGIEIDQDGLTLIAQLADGGMRDALSILDQCVAYCTSHIDVNDIRKIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
GV++ E + +L D +K ++ D G+D L + ++ D + Y+
Sbjct: 241 GVITSEDIGQLFSSIYKKDVDRFIKDIQKYSDMGMDIKRLTADFIHMLKDSLILDYSENS 300
Query: 758 RSLTEAELERLKHALKL------------LSEAEKQLRLSSERCTWFTATLLQLGSM-HS 804
+++ + ++ K L + + +S + A+LL++ S +
Sbjct: 301 TLVSDMNKDMIRKYFKSAPIHFRIQCMEELMDTYNKYTYASNALDYLEASLLKISSYSYE 360
Query: 805 PDLTQSGSSRRQSSRTTEEDPSST 828
P + S +S EED T
Sbjct: 361 PKSNKFESEYDNNSDIEEEDNYET 384
>gi|182416378|ref|YP_001821444.1| DNA polymerase III subunits gamma and tau [Opitutus terrae PB90-1]
gi|177843592|gb|ACB77844.1| DNA polymerase III, subunits gamma and tau [Opitutus terrae PB90-1]
Length = 395
Score = 209 bits (531), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 198/346 (57%), Gaps = 13/346 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P FD+++GQ+ VV++L N I+R RIA YLF GPRGTGKTSTA+IF+ ALNC
Sbjct: 9 IARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCT 68
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ C G + +E+DG + G+D+VR + + A R+KV+
Sbjct: 69 DGPKADFDPNDPACKAIAEGSHLDVIEIDGASNNGVDQVRDLRDTVQYA--PAQGRYKVY 126
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V F+F TTD V +I SRCQ++ I I
Sbjct: 127 IIDEVHMLSAAAFNALLKTLEEPPGHVKFVFATTDPQKVLPTIISRCQRFDLKPIPPDLI 186
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ARL++I+A E + + AL+ IA ADG +RDA+++LDQ+ S G I+ + V ++ G+
Sbjct: 187 IARLKQIAASEKITISAAALECIARMADGGMRDAQSILDQMISFCGTDISEADVLDVYGL 246
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI----MDIIAG---T 752
VS EK+ EL + D + V + +G D + L+S L + + +D IA +
Sbjct: 247 VSAEKIAELAGALAAGDHRKIVAIVDDCDTNGRDLVRLLSDLQAFVRAALLDAIAQGGRS 306
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+GG +T +L R+ AL+ E E ++L F TLL+
Sbjct: 307 AKLGGEPMTTEQLTRMLDALR---EGEGAVKLGLAEKINFEVTLLK 349
>gi|404329053|ref|ZP_10969501.1| DNA polymerase III subunits gamma and tau [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 565
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 109/292 (37%), Positives = 172/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F +L GQ + Q+L N + R + + YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRVYRPQTFHDLAGQQRITQTLQNALVRQQFSHAYLFTGPRGTGKTSAAKILAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G+ + +E+D + G+D +R I + PS R+K
Sbjct: 64 CEHAPVAEPCNQCSACRGITEGRIADVIEIDAASNNGVDEIREIRDKVKYA-PSEV-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ VVFI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPEHVVFILATTEPQKIPLTIISRCQQFDFRRIPAS 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
I RL+ +S +++L E +AL LIA ++G +RDA ++LDQ + G ++T V ++
Sbjct: 182 AIADRLKFVSDDQHLKAEDEALQLIARASEGGMRDALSVLDQTAAYGDGKVTVQDVLDVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G+VS+ ++ L E + D A +++ EL+D G D + L+ QL D++
Sbjct: 242 GMVSDRLIVALTESLEARDAAAAIEKTAELLDQGKDSLRLIEQLIFYYRDLL 293
>gi|397906212|ref|ZP_10507030.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
gi|397160729|emb|CCJ34365.1| DNA polymerase III subunits gamma and tau [Caloramator australicus
RC3]
Length = 533
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/330 (36%), Positives = 195/330 (59%), Gaps = 11/330 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FDE++GQ +V++L N I G I+ YLF G RGTGKTSTA+IF+ A+NC
Sbjct: 4 ALYRKWRPQNFDEVVGQEPIVKTLKNQIKAGHISHAYLFSGTRGTGKTSTARIFAKAINC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C+ G +F+E+D + ++ R ++ +S +P + ++KV
Sbjct: 64 LNPIDGNPCNECEICSGINKGTLLDFIEIDAASNNRVENARDLIDTVS--IPPSKAKYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ VFI TTD VP +I SRCQ++ F +IK +
Sbjct: 122 YIIDEVHMLSTHAFNALLKTLEEPPEYAVFILATTDPQKVPVTILSRCQRFNFKRIKKDE 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVG 698
I RL+ I E + +E + LDLIA N+DG+LRDA ++LDQL S + +I V ++G
Sbjct: 182 IKERLKLIVNEIGVEIEENVLDLIASNSDGALRDALSLLDQLVSTVSGKIDYESVISILG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ S+E + +L++L + D ++K +++ G D + + I +IIA +
Sbjct: 242 LTSKENIFKLVDLIIEKDIQNSLKLVDKIILEGKD-------INNFIEEIIAHLRNLLMV 294
Query: 759 SLTEAELERLKHALKLLSEAEKQL-RLSSE 787
+++ E + ++ + E + Q R+SSE
Sbjct: 295 KVSKNPSEIIDASIDYIKELKNQAGRISSE 324
>gi|94497479|ref|ZP_01304049.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
gi|94423110|gb|EAT08141.1| DNA polymerase III, subunits gamma and tau [Sphingomonas sp. SKA58]
Length = 538
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 169/298 (56%), Gaps = 13/298 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRSFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C G+ + +E+D + G+D VR I++ + +
Sbjct: 69 CVGPDGQGGPTIDPCGQCEPCKAIAEGRHIDVVEMDAASHTGVDDVREIIEAVRYA--AV 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR------ 687
+I + + E++ EP+AL LIA A+GS RD ++LDQ +
Sbjct: 187 RIPAELLATHFTHVVEAESVAAEPEALALIAQAAEGSARDGLSILDQAIAHAEMDDGPSL 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+T++ V E++G+ + LL L + +TA + RE GV+P+ LM L L+
Sbjct: 247 VTAAQVREMLGLSDRGSVRRLLALLLEGETASLIAAVREQYALGVEPLALMRGLMELV 304
>gi|284049060|ref|YP_003399399.1| DNA polymerase III subunits gamma and tau [Acidaminococcus
fermentans DSM 20731]
gi|283953281|gb|ADB48084.1| DNA polymerase III, subunits gamma and tau [Acidaminococcus
fermentans DSM 20731]
Length = 671
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/250 (39%), Positives = 155/250 (62%), Gaps = 2/250 (0%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L + ++P FD+L+GQ + ++L N + GRI+ YLF GPRGTGKTSTA+I + ALNC
Sbjct: 5 ALYRTWRPQDFDDLVGQAPIKKALTNALETGRISHAYLFAGPRGTGKTSTARILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + G + +E+D + +G+D +R + + + S R+KV
Sbjct: 65 EKGPTAHPCNQCSNCREITEGTCGDVVEIDAASNRGIDEIRKLREQVY--FAPTSCRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H++ + + A LK LEEPP+ VVFI TT+ + +I SRCQ++ F + +
Sbjct: 123 YIIDEVHMITTDAFNALLKTLEEPPEHVVFILATTEPQKILNTILSRCQRFDFRRATVDE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I L K++ ++ EP+AL L+A+ ADG LRDA ++LDQ S++ +T+ V +++G+
Sbjct: 183 IAEHLEKVAKGSHIQAEPEALRLMAIQADGGLRDALSLLDQCSVMASPVTAETVRQVLGL 242
Query: 700 VSEEKLLELL 709
V EKL EL+
Sbjct: 243 VGREKLRELV 252
>gi|334338701|ref|YP_004543681.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum ruminis
DSM 2154]
gi|334090055|gb|AEG58395.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
ruminis DSM 2154]
Length = 547
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/334 (34%), Positives = 199/334 (59%), Gaps = 12/334 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F EL+GQ + ++L N + G++A YLF GPRGTGKT+TAK+ + ALN
Sbjct: 4 KALYRTWRPQTFHELVGQQHITRTLQNALVNGKVAHAYLFCGPRGTGKTTTAKVLAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ D +PC C C G S + +E+D + +G+D +R + + + A+ R K
Sbjct: 64 CLNNDLGEPCNECDNCRAVNEGTSVDVIEIDAASNRGIDEIRDLREKVK--FAPATGRRK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F +IK
Sbjct: 122 VYIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPVTILSRCQRFDFRRIKTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
+++ RL++++A + VE +AL LIA A+G LRDA ++LDQ + ++++++ ++ ++
Sbjct: 182 EMLGRLKEVAAGAGIEVEEEALRLIAEAAEGGLRDALSILDQGAAFAEEKVSAADIHSIL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV----LMSQLASLIMDIIAGTY 753
G V +E L ++ + ++ E+ D G D + L S L L+++ +
Sbjct: 242 GTVQQEVLARMVRHLAEGKASLALELLAEINDRGKDLRLFARELTSHLRGLLLEGLDQKS 301
Query: 754 TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSE 787
G SL E + L H L++L +AE++++ SS+
Sbjct: 302 PAG--SLQE---QTLFHLLQVLVQAEQEMKWSSQ 330
>gi|304440577|ref|ZP_07400463.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370953|gb|EFM24573.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 589
Score = 208 bits (530), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 117/363 (32%), Positives = 202/363 (55%), Gaps = 16/363 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ FDE++GQ+ V+ S+ + ++ Y+F G RGTGKTSTAKI + A+N
Sbjct: 3 QALYRKYRSRTFDEVVGQDQVINSIKYQVKNSTVSHAYIFSGTRGTGKTSTAKILARAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PC C C + G + + +E+D + G+D +R + + A P ++ ++K
Sbjct: 63 CEHPIDGNPCNECETCKSILRGTNLDVVEMDAASNNGVDDIRDLREK--AFYPPSTSKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ ++FI TT+I+ VP++I SR Q+Y F +I
Sbjct: 121 VYIIDEVHMLSKGAFNALLKILEEPPKHLIFILATTEIERVPQTILSRTQRYTFKRISID 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I + +I A+E +++ +DLIA ADGS+RDA ++LD++ + I+ + E++
Sbjct: 181 TISKNISEILAKEGKSIDEAGIDLIAQMADGSMRDAVSLLDRVVAINDNNISYDKIIEVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGTYTIG 756
GV +E+ L EL ++SD + + L D G D MVL+ + S +I IA
Sbjct: 241 GVTTEDTLFELATSILNSDASSIIMSVANLADDGKDMMVLIDGIVSFFRNILIAKNLNYP 300
Query: 757 GRSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
+ + +++R + + +K+LSE + + R + + T A LL++ +
Sbjct: 301 RKIIRVRDMDRYVAIANAFSNSEILNIIKILSETKARSRYITNKRTMLEAALLEIVASRQ 360
Query: 805 PDL 807
D+
Sbjct: 361 DDI 363
>gi|395240954|ref|ZP_10417976.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
gi|394475462|emb|CCI87953.1| Possible DNA-directed DNA polymerase [Lactobacillus gigeriorum
CRBIP 24.85]
Length = 573
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 141/434 (32%), Positives = 225/434 (51%), Gaps = 29/434 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + ++L N + R I+ +LF GPRGTGKTS AKI + ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITETLKNALVRDTISHAFLFAGPRGTGKTSCAKILAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECPNCLAADKGALADIIEIDAASNNGVDEIREIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPAHVVFILATTELQKVPATIISRTQRYNFKRISKA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +E ++ E DA+ +IA ADG +RDA ++LDQ LS K + + ++
Sbjct: 182 DLEKRMKFILEQEQISYEDDAIAVIAQVADGGMRDALSILDQLLSYEQKSVKYTDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G ++EK+ +LL +S+++ E +K+A+EL D G ++ +L L + T
Sbjct: 242 GFAAKEKIEQLLLKILSANSGEALKQAKELQDEGATAKNILDELIDLTTKALIAKQTQQE 301
Query: 755 -----IGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP- 805
I LT+ ELE+L + L + A LR ++++ L+Q S++ P
Sbjct: 302 QANEFITKDFLTQIGNYELEQLFKLVDLANAALNDLRYTNQQQIPLEVFLVQ-ASIYRPI 360
Query: 806 -------DLT-QSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP--QNAVSPASLR 855
DL+ + G R+Q ++ R A SG Q P + PA+
Sbjct: 361 SLNTGNSDLSDEIGQLRQQIESLQKQVQELKKRPAANANVASGKQATPSQHDIPKPAT-- 418
Query: 856 EPVNGNSRHLGEVL 869
+N N + + VL
Sbjct: 419 -SINNNRKQVYHVL 431
>gi|399994160|ref|YP_006574400.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398658715|gb|AFO92681.1| DNA polymerase III subunit tau [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 606
Score = 208 bits (530), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 17 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 76
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 77 GEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVQYRAASA 134
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 135 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 194
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ L+KI+ EN + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 195 EPEVMIGLLQKIAGAENAQIAEDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 254
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 255 AMLGLADRGRVLDLIDMILRGDAAAALTELSAQYAEGADPLAVLRDLAEI 304
>gi|83941620|ref|ZP_00954082.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
gi|83847440|gb|EAP85315.1| DNA polymerase III, gamma and tau subunits [Sulfitobacter sp.
EE-36]
Length = 582
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 170/292 (58%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +N
Sbjct: 8 RVLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMN 67
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T+PCG C C + G+ + ME+D + G+ +R I+ S +A
Sbjct: 68 CIGPDGNGGPTTEPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIID--SVHYRAA 125
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 126 SARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 185
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ ++A +RKI+ E + DAL LI A+GS RDA ++LDQ +S T+
Sbjct: 186 RIEPEVMIALMRKIATAEGAEIAEDALALITRAAEGSARDATSLLDQAISHGAGETTAVQ 245
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDLAEI 297
>gi|329956773|ref|ZP_08297342.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
12056]
gi|328523812|gb|EGF50899.1| DNA polymerase III, subunit gamma and tau [Bacteroides clarus YIT
12056]
Length = 647
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/393 (31%), Positives = 215/393 (54%), Gaps = 19/393 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 41 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 100
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+A T + + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 101 KTINCMAPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 158
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 159 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 218
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 219 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYQS 278
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E +L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 279 VIENLNVLDYEYYFKLTDHFLENKVSDALLLLNDVLNKGFDGSHFITGLSSHFRDLLVSK 338
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R T+A+ L L A+KL ++ + R S + TL+Q
Sbjct: 339 DPATLPLLEVGASIRQRYQTQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 398
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSR 830
+ + + D +G S +Q+ + P++T +
Sbjct: 399 VAQITAEGDDVANGRSPKQAIKPIFTQPAATQQ 431
>gi|158321874|ref|YP_001514381.1| DNA polymerase III subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
gi|158142073|gb|ABW20385.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus oremlandii
OhILAs]
Length = 563
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/286 (36%), Positives = 176/286 (61%), Gaps = 3/286 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F+++IGQ+ V+ L N IS IA YLF G RGTGKTSTAKIF+ A+N
Sbjct: 4 KALYRRFRPKVFEDVIGQDQVITILKNQISSSNIAHAYLFTGTRGTGKTSTAKIFARAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C++ + PC C C ++ + +E+D + G+D VR I +++ P + ++K
Sbjct: 64 CLSAEDANPCNQCEVCEGILTENIMDVIEIDAASNNGVDNVREIRENVK--YPPSKGKYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ++ F ++
Sbjct: 122 IYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKPVRIN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI+ RL I + + E +AL LIALN+DG+LRDA ++L+Q +S +T + V ++
Sbjct: 182 DIMKRLESICEDIGIKTEEEALRLIALNSDGALRDALSILEQCISYTEDTLTYTNVVNIL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
G+V+ E + +L++ + DT+ + +++ G D +LM + S
Sbjct: 242 GMVNYEFIFDLVDKIAAKDTSSVLTLINDILMEGKDAGILMKDIIS 287
>gi|310815375|ref|YP_003963339.1| DNA polymerase III subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
gi|385232912|ref|YP_005794254.1| DNA polymerase III subunits gamma and tau [Ketogulonicigenium
vulgare WSH-001]
gi|308754110|gb|ADO42039.1| DNA polymerase III, subunits gamma and tau [Ketogulonicigenium
vulgare Y25]
gi|343461823|gb|AEM40258.1| DNA polymerase III subunits gamma and tau [Ketogulonicigenium
vulgare WSH-001]
Length = 583
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 173/298 (58%), Gaps = 11/298 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N R L++KY+P F +L+GQ+ +V++L N + GRIA ++ G RGTGKT+TA+I +
Sbjct: 5 QNYRVLARKYRPETFADLVGQDAMVRTLKNAFAAGRIAQAFIMTGIRGTGKTTTARIIAK 64
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
LNC+ D T+PCG C C G+ + +E+D ++ G++ +R I+ S
Sbjct: 65 GLNCIGVDGTGGPTTEPCGKCEHCVAITEGRHVDVLEMDAASRTGVNDIREIID--SVHY 122
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+AS R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 123 RAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRF 182
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---- 686
+I+ ++A LRKI+ E + DAL LI A+GS RDA ++LDQ G
Sbjct: 183 DLRRIEPEVMIALLRKIADAETAAITDDALALITRAAEGSARDATSLLDQAISHGAGSDV 242
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
T+ V ++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 243 GTTADQVRGMLGLADRGRVLDLFDMVLRGDAAGALSELSAQYADGADPMAVLRDLAEI 300
>gi|223983491|ref|ZP_03633677.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
12042]
gi|223964663|gb|EEF68989.1| hypothetical protein HOLDEFILI_00957 [Holdemania filiformis DSM
12042]
Length = 613
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/402 (31%), Positives = 210/402 (52%), Gaps = 37/402 (9%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F+E++GQ +V +L N + + +IA YLF GPRGTGKT+ AK+ + A+N
Sbjct: 4 KALYRTYRPSSFEEVVGQQHIVTTLKNAVKQNKIAHAYLFCGPRGTGKTTIAKLLAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C Q PC CR C G + +E+D + G+D VR +++ + R+K
Sbjct: 64 C-EDQQNAPCNQCRSCLAIQQGNHPDIVEIDAASNNGVDEVRELIEKVKYA--PLEGRYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ S + A LK LEEPP V+FI TT+ V +I SRCQ+Y F+K+
Sbjct: 121 VYIIDEVHMMSSGAFNALLKTLEEPPSHVIFILATTEPQKVLPTIISRCQRYDFSKVGQN 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+I+ R+R + +E++ E +AL L+A ADG +RDA +++DQ ++ IT++ VNE+
Sbjct: 181 EIITRVRCVLEQEHIECEDEALRLVAQLADGGMRDALSIMDQCIAYAQNHITAAHVNEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G+ + + +E+L+ +++ R L + GVD L S L ++ + + YT
Sbjct: 241 GITTVSEKIEMLQWIFQHQAQSLLEKIRLLNEKGVDIKRLTSDLIEILKECVIFIYTQDV 300
Query: 755 --------------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
I G+S + L + +L E ++ R +S ++F +L++
Sbjct: 301 TLLNKINETEANAIINGKSSRD-----LLALIDILMETLEKYRTASSAASYFEVAVLKM- 354
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQ 842
M D QS RT P S+ A + PQ
Sbjct: 355 -MAELD---------QSRRTAAVIPPVYSQPATAPSIPASPQ 386
>gi|83855097|ref|ZP_00948627.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
gi|83842940|gb|EAP82107.1| DNA polymerase III subunits gamma and tau [Sulfitobacter sp.
NAS-14.1]
Length = 582
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 170/292 (58%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +N
Sbjct: 8 RVLARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMN 67
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T+PCG C C + G+ + ME+D + G+ +R I+ S +A
Sbjct: 68 CIGPDGNGGPTTEPCGVCEHCVAIMEGRHVDVMEMDAASNTGVGNIREIID--SVHYRAA 125
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 126 SARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 185
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ ++A +RKI+ E + DAL LI A+GS RDA ++LDQ +S T+
Sbjct: 186 RIEPEVMIALMRKIATAEGAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTAVQ 245
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALDELGNQYSDGADPMAVLRDLAEI 297
>gi|218132111|ref|ZP_03460915.1| hypothetical protein BACEGG_03739 [Bacteroides eggerthii DSM 20697]
gi|217985761|gb|EEC52102.1| DNA polymerase III, subunit gamma and tau [Bacteroides eggerthii
DSM 20697]
Length = 607
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 226/430 (52%), Gaps = 26/430 (6%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ+ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSFTGGNITYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + + + + + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLENKVCDALLLLNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRT--TEEDPSSTSREAVVYKRMSG---PQYMPQNAVSPA 852
+ + + D SG S +Q+ + T+ P+ S+ A V R PQ P A +P
Sbjct: 359 VAQITAEGDDAASGHSPKQAIKPIFTQPAPAQQSQAAPVAPRPQASIKPQTAP--ATTPV 416
Query: 853 SLREPVNGNS 862
+ P NS
Sbjct: 417 TNTAPTTTNS 426
>gi|193213861|ref|YP_001995060.1| DNA polymerase III subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
gi|193087338|gb|ACF12613.1| DNA polymerase III, subunits gamma and tau [Chloroherpeton
thalassium ATCC 35110]
Length = 403
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/366 (34%), Positives = 201/366 (54%), Gaps = 29/366 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC- 519
+++KY+P F ++ Q V ++L N I GRIA Y+F G RG GKT+ A+I + LNC
Sbjct: 6 IARKYRPQKFSDITAQEHVTRTLRNAIRTGRIAHGYIFSGSRGVGKTTAARILAKGLNCE 65
Query: 520 -VATDQ------TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ D+ ++PCG C C DF +G S N E D + +D +R + +++ P
Sbjct: 66 KILKDEAYRETVSEPCGECESCRDFDAGSSLNISEFDAASNNSVDDIRALRENVRYA-PQ 124
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R+KV++IDE H+L + + AFLK LEEPP VFIF TT+++ VP +I SRCQK+ F
Sbjct: 125 KG-RYKVYIIDEFHMLSNAAFNAFLKTLEEPPSHAVFIFATTELNKVPPTIASRCQKFNF 183
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-----LSLLGKR 687
+I DI RL +I A E +N++ D+L LIA ADG++RDA+++LDQ LS ++
Sbjct: 184 KRISVLDIQERLAEICAAEAINIDVDSLTLIARKADGAMRDAQSLLDQVISFFLSTENEK 243
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
I + V L+G + +E + + + A+ ++ +R + D+G D + +++L +
Sbjct: 244 IEYTNVAALLGDIDDEHFFAVTDSIKEKNHAKVLELSRYIFDNGFDTLDFLARLVEHFRN 303
Query: 748 -----------IIAGTYTIGGRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFT 793
+I T R EA+ E L + ++++AEK +R E F
Sbjct: 304 FLLVKNLRSSKLIERTEAAKKRYEAEADTFSAEELMRFIDVVNQAEKDIRFFREPQLRFE 363
Query: 794 ATLLQL 799
LL+L
Sbjct: 364 LALLKL 369
>gi|306821443|ref|ZP_07455047.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
subsp. margaretiae ATCC 43715]
gi|304550518|gb|EFM38505.1| DNA polymerase III, gamma/tau subunit DnaX [Eubacterium yurii
subsp. margaretiae ATCC 43715]
Length = 538
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 135/388 (34%), Positives = 215/388 (55%), Gaps = 33/388 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F+ +IGQ+ V L N I +I+ Y+F G RGTGKTSTAK+F+ +LNC
Sbjct: 4 ALYRKYRPDNFENIIGQSQVTDVLKNQIKEDKISHAYVFSGTRGTGKTSTAKVFAKSLNC 63
Query: 520 V-ATDQTKPCGYCREC-NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ ++ PC +C C ND++ +E+D + +D +R LK PS R+
Sbjct: 64 QNYSPESGPCNHCESCKNDYVDT-----IEIDAASNNSVDNIRA-LKDNIIYRPSFG-RY 116
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + A LK LEEPP+ V+FI TT+I+ +P +I SRCQK+ F K+
Sbjct: 117 KVYIIDEVHMLSIGAFNALLKTLEEPPEHVIFILATTEINKIPATILSRCQKFEFKKVSI 176
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI +RL+ I EN+ + DA+D IA +DG LRDA + LDQ++ LG RI+ ++ +
Sbjct: 177 EDIKSRLKFIVENENIPYDVDAIDYIATMSDGGLRDAISTLDQVASLG-RISMENLDFVT 235
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+ S K+ E L+ + +T +++K E+ VD L SQ+ S ++DII
Sbjct: 236 GMTSISKIDEYLKSVFTKNTFDSLKTVNEMTSDNVDIKKLPSQIISRLLDIIYLQ----- 290
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-------PD-LTQ 809
+K +K+L E+ LS + + ++++ + S PD L Q
Sbjct: 291 --------NNVKTDVKMLESLEELASLSKDE--DISTLIVEISEVESDMKYASFPDILFQ 340
Query: 810 SGSSRRQSSRTTEEDPSSTSREAVVYKR 837
S + ++ S T+ +D S+ +E K+
Sbjct: 341 SFTVKKCQSITSNQDVSALVKEISALKQ 368
>gi|157414264|ref|YP_001485130.1| DNA polymerase, subunits gamma and tau [Prochlorococcus marinus
str. MIT 9215]
gi|157388839|gb|ABV51544.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
str. MIT 9215]
Length = 586
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 133/415 (32%), Positives = 220/415 (53%), Gaps = 23/415 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPNNLDELVGQKFISITLKEALLTQKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+A D+ PC C C G + + +E+D + G++ +R I++ A R
Sbjct: 66 CLAFDKPTINPCCKCDLCRQITDGNALDIIEIDAASNTGVENIREIIER--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP RV+FI TT+ + V +IQSRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPSRVIFILATTNPERVLNTIQSRCQKFDFRRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
GDI L +I+ +E++ E AL +IA ++G +RDA+++L+QL+LL + IT + + L
Sbjct: 184 PGDIFQHLSEIAEKESIEYEVQALKMIAKRSNGGMRDAQSLLEQLNLLQEGITINNIQNL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G VSE +L L++ + ++ + +L D+G +P ++ L ++ D++ T
Sbjct: 244 LGEVSEIELTNLIQSLVENNPESLIITCNKLYDAGNEPNQIIIGLLNITRDLLLYTTNNK 303
Query: 757 GRSLT------EAELERLKHALKL---------LSEAEKQLRLSSERCTWFTATLLQLGS 801
L + EL+++ + L E Q++ S WF L G
Sbjct: 304 YSDLYYTSDEFQDELDKISKTINKSTIINWHNNLRNIEYQIKTSDNPRLWFEIHL--TGL 361
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP--QNAVSPASL 854
+++ ++ + + + EE S + + +S P N +SP L
Sbjct: 362 LNNQEVNSFDNKKEGKNNENEEKHKSIKNIVINNENISNQMQKPIINNKISPEEL 416
>gi|289551726|ref|YP_003472630.1| DNA polymerase III subunits gamma and tau [Staphylococcus
lugdunensis HKU09-01]
gi|315660106|ref|ZP_07912964.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
lugdunensis M23590]
gi|385785273|ref|YP_005761446.1| DNA polymerase III subunit tau [Staphylococcus lugdunensis N920143]
gi|418415671|ref|ZP_12988876.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289181257|gb|ADC88502.1| DNA polymerase III subunits gamma and tau [Staphylococcus
lugdunensis HKU09-01]
gi|315495007|gb|EFU83344.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
lugdunensis M23590]
gi|339895529|emb|CCB54858.1| DNA polymerase III, tau subunit [Staphylococcus lugdunensis
N920143]
gi|410875127|gb|EKS23057.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 576
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 200/363 (55%), Gaps = 8/363 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V Q+L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ ++ +PC C C +G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSNDGEPCNECAICKGITTGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 FKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIN 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ E+ ++ + AL+ IA ++G +RDA +++DQ G +T +
Sbjct: 180 SEQIVERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIMDQAIAFGDDHLTLKDALD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGT 752
+ G V E L +L + ++ D E R + G + L++ + + D I
Sbjct: 240 VTGSVDEAALNDLFKDIVNGDVREAFTRYHHFISEGKEVNRLINDMIYFVRDTIMSKTAD 299
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH--SPDLTQS 810
++ +L + +LE L H + ++++ +R S + F L+++ M SP+ Q+
Sbjct: 300 ESMTYDALADFDLEMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMMKTSPENVQN 359
Query: 811 GSS 813
++
Sbjct: 360 VAT 362
>gi|375087225|ref|ZP_09733607.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
gi|374562042|gb|EHR33377.1| DNA polymerase III, subunit gamma and tau [Megamonas funiformis YIT
11815]
Length = 637
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 169/284 (59%), Gaps = 3/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +LIGQ + ++L N IS G++A YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C G + E+D + +G+D +R + + + ++KV
Sbjct: 65 EHGPTPTPCNQCVCCQKINDGSFMDVFEIDAASNRGIDEIRDLRE--TVKFAPVDGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT++ VP +IQSRCQ+Y F +I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ RL I+ E LN + DAL +IA+ ADG +RDA ++LDQ L+ +T + V +++G
Sbjct: 183 ILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAFTKDELTVTQVRKVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
+V + + ++ + D+ + E++ G + L+++L
Sbjct: 243 LVGHDWVWQITDALAKKDSQTILTILDEIIAQGKEIKQLLNELV 286
>gi|162448529|ref|YP_001610896.1| DNA polymerase III subunit tau [Sorangium cellulosum So ce56]
gi|161159111|emb|CAN90416.1| DNA polymerase III subunit Tau [Sorangium cellulosum So ce56]
Length = 829
Score = 208 bits (529), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/289 (40%), Positives = 162/289 (56%), Gaps = 7/289 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F++L+GQ V +L N I+R R+A +LF G RG GKT++A+I + ALNCV
Sbjct: 42 LARKWRPQSFEDLVGQEHVSTTLANAIARDRVAHAFLFTGVRGVGKTTSARILAKALNCV 101
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C + G + E+DG + G+D VR + + L A RFK+F
Sbjct: 102 HGPTATPCQTCAPCAEITVGADVDVQEIDGASYNGVDEVRKLQESLP--YRPARDRFKIF 159
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L + W AFLK LEEPP V FIF TT++ VP +I SRCQ+Y F I I
Sbjct: 160 IVDEVHMLSNAAWNAFLKTLEEPPPHVKFIFATTEVHKVPVTILSRCQRYDFKLIGAQAI 219
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ----LSLLGKRITSSLVNEL 696
ARLR + +E + + AL +A A GS+RDA ++LDQ + G RIT+ V ++
Sbjct: 220 AARLRWVLDQEKIPADDPALSALAREAAGSMRDAMSLLDQVIAWVGTSGDRITAEGVAKV 279
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD-PMVLMSQLASL 744
+GV L L + D A V+ EL G D P V LA L
Sbjct: 280 LGVADRVVLHRLAGALVDGDPAACVRIVGELAQEGYDLPHVARDFLAHL 328
>gi|282859211|ref|ZP_06268333.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|424900327|ref|ZP_18323869.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
gi|282588030|gb|EFB93213.1| DNA polymerase III, subunit gamma and tau [Prevotella bivia
JCVIHMP010]
gi|388592527|gb|EIM32766.1| DNA polymerase III, subunit gamma/tau [Prevotella bivia DSM 20514]
Length = 595
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 207/375 (55%), Gaps = 20/375 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P FD ++GQ + +L N + G++A YLF GPRG GKT+TA+IF+ A+NC
Sbjct: 8 ARKYRPATFDSVVGQAALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTTARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + + C C C F G+S N E+D + ++ ++ +++ +P ++KVF
Sbjct: 68 PTSEGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKDLMEQ--TRIPPQIGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L S+ + AFLK LEEPP +V+FI TT+ + +I SRCQ Y F ++ DI
Sbjct: 126 IIDEVHMLSSQAFNAFLKTLEEPPAQVIFILATTEKHKILPTILSRCQIYDFERMSVPDI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L++++A+EN+ E AL++IA ADG +RDA ++ DQ++ + IT V E + V
Sbjct: 186 IEHLKRVAAKENITYEEKALNIIAEKADGGMRDALSVFDQVASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ E+ +++LA+ + ++ + ++ G D L++ LAS + +++ +
Sbjct: 246 LDEDNYFNIIDLALQNKVSDIMVVMNNAINKGFDAGRLINGLASHVRNVLMAK-DVATLP 304
Query: 760 LTEAELER---------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
L EA ++ L AL+ +++ + R SS + TL+++ +
Sbjct: 305 LLEASEQQKTRYQEQAAKCPTSFLYKALQQMNQCDVNYRQSSNKRLLAELTLIEVAQITQ 364
Query: 805 PDLTQSGSSRRQSSR 819
P+ T +S R R
Sbjct: 365 PEDTDMPASGRSPKR 379
>gi|325298548|ref|YP_004258465.1| DNA polymerase III subunits gamma and tau [Bacteroides salanitronis
DSM 18170]
gi|324318101|gb|ADY35992.1| DNA polymerase III, subunits gamma and tau [Bacteroides
salanitronis DSM 18170]
Length = 594
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/380 (32%), Positives = 203/380 (53%), Gaps = 20/380 (5%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P FD ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFDTVVGQRALTTTLKNAIANHKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCLHPTSEGEACNACESCVAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 VGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSL 692
+I D+V L ++++E+++ EP+AL +IA ADG +RDA ++ DQ+ S IT
Sbjct: 179 RISVNDMVEHLESVASKEHIDAEPEALTVIAQKADGGMRDALSIFDQVASFTNGHITYRS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L + + + E + +++ G D ++ LAS D++
Sbjct: 239 VIENLNVLDYEYYFKLTDFILENKVPECLLTFNDVLQKGFDGNHFITGLASHFRDLLVSH 298
Query: 750 ---------AGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
AG +I R L +A+ L A+KL ++ + R+S + TL+
Sbjct: 299 DPSTLPLLEAGA-SIRERYLAQAQKCTAPFLFKAMKLCNDCDLNYRVSKNKRLLIELTLI 357
Query: 798 QLGSMHSPDLTQSGSSRRQS 817
QL + PD G S Q+
Sbjct: 358 QLAQLTEPDAESEGRSPTQT 377
>gi|254438399|ref|ZP_05051893.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
gi|198253845|gb|EDY78159.1| DNA polymerase III, subunits gamma and tau, putative
[Octadecabacter antarcticus 307]
Length = 590
Score = 207 bits (528), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 72 GIDGQGGPTTEPCGTCENCAAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ D + LRKI+ E + DAL LI A+GS RDA+++LDQ +S T+ V
Sbjct: 190 EPEDQIGLLRKIAKAEKAEITDDALALITRAAEGSARDAQSLLDQAISHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + A+ + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILKGRAADALHELSSQYADGADPMAILRDLAEI 299
>gi|418635755|ref|ZP_13198117.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis VCU139]
gi|374841535|gb|EHS05004.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
lugdunensis VCU139]
Length = 576
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 114/363 (31%), Positives = 200/363 (55%), Gaps = 8/363 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V Q+L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFSDVVGQEHVTQTLKNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ ++ +PC C C +G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSNDGEPCNECAICRGITTGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 FKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIN 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ E+ ++ + AL+ IA ++G +RDA +++DQ G +T +
Sbjct: 180 SEQIVERLRFVADEQQIDYDIAALEFIAKASEGGMRDALSIMDQAIAFGDDHLTLKDALD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGT 752
+ G V E L +L + ++ D E R + G + L++ + + D I
Sbjct: 240 VTGSVDEAALNDLFKDIVNGDVREAFTRYHHFISEGKEVNRLINDMIYFVRDTIMSKTAD 299
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH--SPDLTQS 810
++ +L + +LE L H + ++++ +R S + F L+++ M SP+ Q+
Sbjct: 300 ESMTYDALADFDLEMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMMKTSPENVQN 359
Query: 811 GSS 813
++
Sbjct: 360 VAT 362
>gi|291532777|emb|CBL05890.1| DNA polymerase III, subunits gamma and tau [Megamonas hypermegale
ART12/1]
Length = 334
Score = 207 bits (528), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 169/284 (59%), Gaps = 3/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +LIGQ + ++L N IS G++A YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRKWRPQDFSDLIGQEHISETLSNAISTGKVAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C G + E+D + +G+D +R + + + ++KV
Sbjct: 65 EHGPTPTPCNQCVCCQKINDGSFMDVFEIDAASNRGIDEIRDLRE--TVKFAPVDGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT++ VP +IQSRCQ+Y F +I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVVFILATTEVHKVPITIQSRCQRYDFKRITKDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ RL I+ E LN + DAL +IA+ ADG +RDA ++LDQ L+ +T + V +++G
Sbjct: 183 ILKRLVMITDEMGLNADKDALSIIAIQADGGMRDALSLLDQCLAFTKDELTVTQVRKVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
+V + + ++ + D+ + E++ G + L+++L
Sbjct: 243 LVGHDWVWQITDALAKKDSQTILTILDEVIAQGKEIKQLLNELV 286
>gi|126725863|ref|ZP_01741705.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
gi|126705067|gb|EBA04158.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2150]
Length = 596
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 172/290 (59%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKTSTA+I + LNC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVLTGIRGTGKTSTARIIAKGLNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 72 GPDGNGGPTTEPCGQCEHCVAISEGRHVDIMEMDAASRTGVGDIREIIE--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V F+F TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFVFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ L+ +A EN N+ DAL LI A+GS RDA+++LDQ +S T+ V
Sbjct: 190 EPEVMIKMLQGNAASENANITDDALALITRAAEGSARDAQSLLDQAISHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ +++++ E+ M D A + G DP+ ++ LA +
Sbjct: 250 AMLGLADRGRVMDMFEMIMRGDAAGALAELSAQYSDGADPLAVLRDLAEI 299
>gi|372279072|ref|ZP_09515108.1| DNA polymerase III subunits gamma and tau [Oceanicola sp. S124]
Length = 602
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 16 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 75
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
+D T+PCG C C ++G+ + ME+D + ++ +R I+ S +AS
Sbjct: 76 GSDGTGGPTTEPCGQCEHCRAIMAGRHVDVMEMDAASNTSVNDIREIID--SVNYRAASA 133
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 134 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 193
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LRKI+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 194 EPEVMIALLRKIAGREGAEINDDALALITRAAEGSARDATSLLDQAISHGAGETTAEQVR 253
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E+ M D A + G DP+ ++ LA +
Sbjct: 254 AMLGLADRGRVMDLYEMIMKGDAAAALTELSAQYADGADPLAVLRDLAEI 303
>gi|254464305|ref|ZP_05077716.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
gi|206685213|gb|EDZ45695.1| DNA polymerase III, tau subunit [Rhodobacterales bacterium Y4I]
Length = 601
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NCV
Sbjct: 20 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCV 79
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D ++ G++ +R I+ S +AS
Sbjct: 80 GEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRTGVNDIREIID--SVQYRAASA 137
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 138 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 197
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ +++ LRKI+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 198 EPEVMISLLRKIATAEGAQIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 257
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 258 AMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDLAEI 307
>gi|421075383|ref|ZP_15536398.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
JBW45]
gi|392526825|gb|EIW49936.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
JBW45]
Length = 575
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+ L+GQ + +L N I G+IA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRQWRPQDFENLVGQKHISVTLKNAIVSGKIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 IHGPTPEPCNVCLNCQSINTGTSMDVFEIDAASNRGIDEIRELRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKIPATIHSRCQRYDFRRIDAEA 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVG 698
I RL + E LNV PDAL LIA +ADG LRDA ++LDQ + + IT+ V +L+G
Sbjct: 183 IEGRLTAVVQHEGLNVAPDALKLIASHADGGLRDALSILDQCTTMENGIITAEKVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++ E + + E D + EL+ G + ++ ++A + I+
Sbjct: 243 LIGHEWVWSITEALAERDFKAVLMALGELIALGKEVRQILLEVALYMRSIM 293
>gi|255263195|ref|ZP_05342537.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
gi|255105530|gb|EET48204.1| DNA polymerase III subunits gamma and tau [Thalassiobium sp. R2A62]
Length = 585
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFVDLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTDPCGTCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A +RKI+A E+ + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 190 EPEVMIALMRKIAASESAEITDDALALITRAAEGSARDATSLLDQAISHGAGATTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ M D + + G DPM ++ LA +
Sbjct: 250 SMLGLADRGRVLDLFDMIMRGDAHSALSEINQQYADGADPMAVLRDLAEI 299
>gi|99080007|ref|YP_612161.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
gi|99036287|gb|ABF62899.1| DNA polymerase III subunits gamma and tau [Ruegeria sp. TM1040]
Length = 608
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 20 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 79
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 80 GEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVAYRAASA 137
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 138 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 197
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 198 EPEVMIDLLRRIATSEQAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 257
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DPM ++ LA +
Sbjct: 258 AMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPMAVLRDLAEI 307
>gi|375090885|ref|ZP_09737192.1| DNA polymerase III, subunit gamma and tau [Helcococcus kunzii ATCC
51366]
gi|374565021|gb|EHR36299.1| DNA polymerase III, subunit gamma and tau [Helcococcus kunzii ATCC
51366]
Length = 553
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/339 (33%), Positives = 194/339 (57%), Gaps = 7/339 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P F E+ GQ+ +V L N I +I+ Y+F G RGTGKTSTAKIF+ A+N
Sbjct: 3 QALYRKYRPQTFSEVFGQDNIVNILKNQIKHNQISHAYIFSGTRGTGKTSTAKIFAKAIN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ PC C C IS ++ + +E+D + +G+D +R + + P ++ ++K
Sbjct: 63 CLNPIDGNPCNECANCRSIISEENMDIIEMDAASNRGIDDIRQLRDQVI--YPPSTLKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ + + A LK +EEPP+ +VFI TT+++ +P +I SR Q++ F + +
Sbjct: 121 VYIIDEAHMITREAFNALLKIMEEPPKHLVFILATTELEKIPDTILSRTQRFEFKSLSEE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELV 697
DI ++R I +EN+++E A+++IA A G++RDA ++LDQ+ +GK IT+S V +L+
Sbjct: 181 DIQNQIRFILDKENISMEDRAIEIIASVASGAMRDALSILDQVISIGKESITTSEVTDLL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+ S+E + + D ++ +D G DP + + + D+I I
Sbjct: 241 GIFSDEVKINYARAIFNKDIKLLIETIDNELDKGKDPHNFIKDIITFFKDLIYIKVGIKK 300
Query: 758 RSLT----EAELERLKHALKLLSEAEKQLRLSSERCTWF 792
E L++L + + LL E E+ ++ S F
Sbjct: 301 DVFNGISDENSLDQLINTVDLLLEYEELMKKSDSAAILF 339
>gi|384921263|ref|ZP_10021251.1| DNA polymerase III subunits gamma and tau [Citreicella sp. 357]
gi|384464897|gb|EIE49454.1| DNA polymerase III subunits gamma and tau [Citreicella sp. 357]
Length = 591
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N GRIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 15 LARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 74
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D + G+ +R I+ S +AS
Sbjct: 75 GPDGTGGPTTEPCGTCEHCRAIMEGRHVDVMEMDAASNTGVGDIREIID--SVHYRAASA 132
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 133 RYKIYIIDEVHMLSTNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 192
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LRKI+ E ++ DAL LI A+GS RDA ++LDQ +S + V
Sbjct: 193 EPEVMIALLRKIATSETADITDDALALITRAAEGSARDATSLLDQAISHGAGETGAEQVR 252
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D + E G DP+ ++ LA L
Sbjct: 253 AMLGLADRGRVMDLFEKIMRGDAPGALTELSEQYADGADPLAVLRDLAEL 302
>gi|149916416|ref|ZP_01904935.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
gi|149809686|gb|EDM69540.1| DNA polymerase III subunits gamma and tau [Roseobacter sp. AzwK-3b]
Length = 596
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 108/290 (37%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFKADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + +E+D ++ G+ VR I+ S +AS
Sbjct: 72 GPDGQGGPTTEPCGQCEHCTAIMEGRHVDVLEMDAASRTGVGDVREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VN 694
+ ++A LR+I+ E + DAL LI A+GS RDA ++LDQ G TS+ V
Sbjct: 190 EPEVMIALLRRIADAEGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETSAAEVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M D A + G DPM ++ LA +
Sbjct: 250 SMLGLADRGRVLDLFDLIMKGDAAGALTELGGQYAEGADPMAVLRDLAEI 299
>gi|254453888|ref|ZP_05067325.1| DNA polymerase III, gamma and tau subunit [Octadecabacter arcticus
238]
gi|198268294|gb|EDY92564.1| DNA polymerase III, gamma and tau subunit [Octadecabacter arcticus
238]
Length = 586
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 172/290 (59%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAANRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 72 GIDGQGGPTTEPCGKCENCVAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKVYIIDEVHMLSVNAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-LVN 694
+ D + LRKI+ E + DAL LI A+GS RDA+++LDQ G TS+ V
Sbjct: 190 EPEDQIGLLRKIATAEGAEITDDALALITRAAEGSARDAQSLLDQAISHGAGETSADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + A+ ++ G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILKGQAADALQELSGQYADGADPMAILRDLAEI 299
>gi|300865074|ref|ZP_07109900.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria
sp. PCC 6506]
gi|300336938|emb|CBN55050.1| putative DNA polymerase III, subunits gamma and tau [Oscillatoria
sp. PCC 6506]
Length = 463
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/292 (42%), Positives = 179/292 (61%), Gaps = 4/292 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L QKY+P EL GQ + ++L N + +IAP YLF G RGTGKTSTA+I + +LNC
Sbjct: 4 ALPQKYRPHTLSELAGQEYIQRTLSNAVKTNKIAPAYLFAGERGTGKTSTARILAKSLNC 63
Query: 520 VATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
TD+ KPCG C+ C G S + E+D + G+D R +++ S P+ S R+
Sbjct: 64 TNTDKPTVKPCGNCQSCRSIEKGNSLDVSEIDAASHNGVDDARGLIER-SHFAPAIS-RY 121
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DECH L S+ + A LK LEEPP VVFI TT+ V +I SRCQ +LF +
Sbjct: 122 RVFILDECHCLSSQAFNALLKCLEEPPHHVVFILCTTEQHKVLPTINSRCQTFLFRSLPI 181
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
IV +L I+ +E++ + A IA A+G +RDA +LDQLSLLG+ ITS V EL
Sbjct: 182 LSIVQQLTTIAQKESIAITEAAKIAIARAANGGMRDALQLLDQLSLLGEEITSDRVLELS 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G + E L+ +L+ A + D + ++ +REL+DSG +P +L+ L + D++
Sbjct: 242 GRIPESDLVAILQSAGTGDALKLLQLSRELIDSGKNPKMLLGSLLACYRDLL 293
>gi|149179572|ref|ZP_01858104.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
gi|148841589|gb|EDL56020.1| DNA polymerase III gamma and tau subunits [Planctomyces maris DSM
8797]
Length = 484
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 128/414 (30%), Positives = 224/414 (54%), Gaps = 25/414 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++++P F E++GQ +V Q+L N I R+A YLF G RG GKTS A+I + ALNC
Sbjct: 11 LARRFRPQNFSEVVGQGMVAQALQNAIRGDRVAHAYLFTGARGVGKTSMARILAKALNCP 70
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T PCG C C + G + +E+DG + +G+D +R + +++ + S ++K++
Sbjct: 71 HTQDGIPCGECEVCQNIAVGSDVDVLEIDGASNRGIDDIRSLRANVN--VRSMRSKYKIY 128
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ + +P +I SRCQ++ F I++ I
Sbjct: 129 IIDEVHMLTKEAFNALLKTLEEPPPNVKFIFCTTEPNKLPDTILSRCQRFDFGYIEENSI 188
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
RL++I+ E ++V DA+ L+A A GS+RD++++ DQL G+ +T+ V+ ++G
Sbjct: 189 CDRLKQIAEAEQVSVADDAIQLVARRAGGSMRDSQSIFDQLLSFGESHLTAESVHRILGT 248
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD---IIAGTYTIG 756
S+E+L+EL++ + + +++GV + QL + + D + G +
Sbjct: 249 ASDERLIELIDALIEQKRDVALTHFDAALNAGVQLNEFVDQLLNYLRDLSVVATGASQVT 308
Query: 757 GRSLTE---AELERLKH---------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
S++E A L+R A ++L+EA ++ +S L+++ +
Sbjct: 309 LLSISEMNRASLQRQAEAWGIQTCLAAFQILNEARNRMFRASHGRALVELALIRMSLLED 368
Query: 805 PD-----LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPAS 853
D L+ G + + PS ++ A V + +S P PQ + P+S
Sbjct: 369 LDLLSRFLSSGGQIPAAPAAVRQASPSLSA--AAVSQPVSEPPTPPQESTEPSS 420
>gi|259415625|ref|ZP_05739546.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
gi|259348855|gb|EEW60617.1| DNA polymerase III subunits gamma and tau [Silicibacter sp.
TrichCH4B]
Length = 625
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 37 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 96
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 97 GEDGQGGPTTEPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVAYRAASA 154
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 155 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 214
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 215 EPEVMIDLLRRIATNETAEIAEDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 274
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DPM ++ LA +
Sbjct: 275 AMLGLADRGRVLDLMDMILRGDAAAALTELSGQYAEGADPMAVLRDLAEI 324
>gi|108805246|ref|YP_645183.1| DNA polymerase III subunits gamma and tau [Rubrobacter xylanophilus
DSM 9941]
gi|108766489|gb|ABG05371.1| DNA polymerase III, subunits gamma and tau [Rubrobacter
xylanophilus DSM 9941]
Length = 567
Score = 207 bits (527), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/249 (41%), Positives = 153/249 (61%), Gaps = 3/249 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E+ GQ VV++L I GR+A YLF GPRGTGKTSTAK+ + LNC
Sbjct: 5 TLYRRWRPRTFGEIAGQEPVVRTLRRAIETGRVAHAYLFSGPRGTGKTSTAKVLAMGLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C C ++G S + +E+D + +G+D +R + ++ L A+ R KV
Sbjct: 65 AQGPTPEPCGRCESCRSIVAGSSMDVIEMDAASNRGIDEIRELRDRVN--LAPAAGRAKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ VVF+ TT+ V +I SRCQ + F + G
Sbjct: 123 YIIDEVHMLTTEAFNALLKMLEEPPEHVVFVLATTEKHKVLPTIISRCQSFDFRRPGVGT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+V +L +I+ E + E +AL IA + GS RDAE MLDQ+S + R+T +LV EL+G
Sbjct: 183 LVEKLSEIARAEGIEAEREALTAIARASGGSFRDAEGMLDQISSFSEGRVTVALVRELLG 242
Query: 699 VVSEEKLLE 707
E L E
Sbjct: 243 SAGPEMLAE 251
>gi|23016072|ref|ZP_00055832.1| COG2812: DNA polymerase III, gamma/tau subunits [Magnetospirillum
magnetotacticum MS-1]
Length = 597
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 187/340 (55%), Gaps = 14/340 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ +V++L N I GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTARIIARALN 70
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV TD PCG C C + + +E+D ++ G++ +R I++ + SA
Sbjct: 71 CVGTDGKGGPTIDPCGVCEHCRAIAEDRHVDILEMDAASRTGVNDIREIIEGVRYRPTSA 130
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
RFKV++IDE H+L + + A LK LEEPP+ V FIF TT+I +P ++ SRCQ++
Sbjct: 131 --RFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVTVLSRCQRFDLR 188
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+++ + I+A+E +EP AL LIA ADGS+RD ++LDQ +S +T +
Sbjct: 189 RVEMEVLSRHFEAIAAKEGAEIEPAALKLIARAADGSVRDGLSLLDQAISHGAGAVTETQ 248
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V +++G+ ++ +LL+ M D + + + +G DP V++ + L+ +
Sbjct: 249 VRDMLGLADRARVFDLLDAVMKGDVPTALDQITDQYAAGADPAVVLQDMLELVHWLTRLK 308
Query: 753 YTI-GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTW 791
T L E ER+K A E K L L++ W
Sbjct: 309 VTPDAADQLGAPETERVKGA-----EMAKTLSLAALTRAW 343
>gi|417659116|ref|ZP_12308726.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU045]
gi|329736044|gb|EGG72317.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU045]
Length = 568
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTYVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|440685071|ref|YP_007159865.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
gi|428682190|gb|AFZ60955.1| DNA polymerase III, subunits gamma and tau [Anabaena cylindrica PCC
7122]
Length = 499
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 18/349 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L QKY+P EL+GQ + +L N I +IAP YL G RGTGKTSTA+IF+ +LNC
Sbjct: 5 ALHQKYRPQTLAELVGQPYIKTALTNAIKHLQIAPAYLLTGSRGTGKTSTARIFAKSLNC 64
Query: 520 VATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ + + KPCG C+ C + S + E+D + G+D R +++ + L + R+
Sbjct: 65 LNSKKPTDKPCGICQSCRAIETSNSLDVSEIDAASNNGVDDARALIERCT--LAPVAGRY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
++F++DE H L +++ A LK +EEPP V+FI TT+ V +I SRCQ + F +
Sbjct: 123 RIFILDENHQLTTQSQNALLKCIEEPPPHVIFILCTTEQHKVLPTIISRCQVFNFRTLSI 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
IV LR I+ E++ V+ +AL IA +DG LRDA +L Q SLL IT+ V E+V
Sbjct: 183 KTIVQHLRIIADAESIAVDDEALSAIARLSDGGLRDALQLLGQASLLDVDITAHHVMEIV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA------- 750
G V+E +L+ +L+ +++T ++ AR L+DSG P +++S L D++
Sbjct: 243 GGVTEAELIAILQAISTNNTFNLLQVARVLVDSGKTPKLIISNLLQTYRDLLIIKSAPQE 302
Query: 751 GTYTIGGRSLTEAE-------LERLKHALKLLSEAEKQLRLSSERCTWF 792
G S T+ + E L +L L +AE LR + W
Sbjct: 303 QALLTGCVSHTQLKAFAKHWNFETLNLSLGELQKAENYLRYTVNATVWL 351
>gi|418412906|ref|ZP_12986156.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis BVS058A4]
gi|410883766|gb|EKS31601.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis BVS058A4]
Length = 568
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 112/348 (32%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
I SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 IHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|339626453|ref|YP_004718096.1| DNA polymerase III subunits gamma and tau [Sulfobacillus
acidophilus TPY]
gi|379005911|ref|YP_005255362.1| DNA polymerase III subunits gamma and tau [Sulfobacillus
acidophilus DSM 10332]
gi|339284242|gb|AEJ38353.1| DNA polymerase III gamma and tau subunits [Sulfobacillus
acidophilus TPY]
gi|361052173|gb|AEW03690.1| DNA polymerase III, subunits gamma and tau [Sulfobacillus
acidophilus DSM 10332]
Length = 528
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 175/300 (58%), Gaps = 6/300 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F E+ GQ V +L + +GR+A YLF GPRGTGKTS A+I + LN
Sbjct: 4 QALYRVYRPRTFSEVAGQRRTVATLREAVRQGRVAHAYLFAGPRGTGKTSIARILAKTLN 63
Query: 519 CVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C A T+ PC C C G + +E+D + +G+D +R I + + +A R+
Sbjct: 64 CAAPTEAGDPCLTCTSCQAVEQGNHLDVIEIDAASNRGIDEIREIKERIYHQ--TAMSRY 121
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV+++DE H+L + + A LK LEEPP VVFI TT+ +P ++ SRCQ+Y F ++
Sbjct: 122 KVYIVDEVHMLTPEAFNALLKTLEEPPSHVVFILATTEPQKLPVTVLSRCQRYEFQRLSL 181
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DIV RL ++ EE++ EP+AL +IA +ADG+LRDA +MLDQ+ + + + E++
Sbjct: 182 EDIVDRLTRVVHEESVAFEPEALQMIADHADGALRDALSMLDQVIAMHGAVRLADSIEVL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G + E+L L+ A+ V+ EL+D+G D ++ A + D++ Y + G
Sbjct: 242 GALHPERLATLIG-ALGQSVDSVVRALAELVDAGADYTRILRDTARHLRDVM--VYRLAG 298
>gi|56698372|ref|YP_168745.1| DNA polymerase III subunits gamma and tau [Ruegeria pomeroyi DSS-3]
gi|56680109|gb|AAV96775.1| DNA polymerase III, gamma and tau subunits [Ruegeria pomeroyi
DSS-3]
Length = 583
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 172/290 (59%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G++ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIID--SVRYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-LVN 694
+ D++A +R+I+ E + DAL LI A+GS RDA ++LDQ G TS+ V
Sbjct: 190 EPEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGETSAEQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEI 299
>gi|328954114|ref|YP_004371448.1| DNA polymerase III subunits gamma and tau [Desulfobacca acetoxidans
DSM 11109]
gi|328454438|gb|AEB10267.1| DNA polymerase III, subunits gamma and tau [Desulfobacca
acetoxidans DSM 11109]
Length = 546
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/274 (37%), Positives = 164/274 (59%), Gaps = 3/274 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P FDE++GQ + ++L N + GR+A +LF GPRG GKTS A+I + ALNC
Sbjct: 6 LARKWRPQNFDEVVGQEHITRTLKNALESGRVAHAFLFSGPRGVGKTSIARILAKALNCA 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C+ C + G S + +E+DG + +G+D VR + +++ LP A +KVF
Sbjct: 66 EGPAPTPCNRCQSCVEITQGHSLDVLEIDGASNRGIDEVRELRENIKY-LP-AHGSYKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP +FI TT+ VP +I SRCQ+Y F ++ I
Sbjct: 124 IIDEVHMLTKEAFNALLKTLEEPPPHAIFIMATTESHKVPVTILSRCQRYDFKRLSTAAI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
A L ++A+E ++ P+ L LIA A+G +RDA+ +LDQ ++ G ++ + ++GV
Sbjct: 184 QAHLANLTAQEGWHLAPEGLLLIAQEAEGGMRDAQGLLDQVITFGGTEVSPPEIARILGV 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
LL+ LE ++ A+ + EL + G D
Sbjct: 244 TDRLLLLQTLEAILNRQAAQLLDILAELHEHGHD 277
>gi|283780299|ref|YP_003371054.1| DNA polymerase III subunits gamma/tau [Pirellula staleyi DSM 6068]
gi|283438752|gb|ADB17194.1| DNA polymerase III, subunits gamma and tau [Pirellula staleyi DSM
6068]
Length = 715
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 28/368 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++++Y+P F +L+GQ V Q+L N I+ GR+ YLF G RG GKTSTA+IFS ALNCV
Sbjct: 45 VARRYRPQDFTQLVGQAQVSQALGNAINTGRVGHAYLFTGARGVGKTSTARIFSKALNCV 104
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL---PSASPRF 577
T+PCG C C SG + +E+DG + +G+D +R L +G+ PS + RF
Sbjct: 105 NGPTTQPCGVCDICRGVASGDDVDVIEIDGASNRGIDEIR----QLRSGVNIRPSRA-RF 159
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+++IDE H+L + + A LK LEEPP+ V FIF TT+ D +P ++ SRCQ++ F +
Sbjct: 160 KIYIIDEVHMLTTPAFNALLKTLEEPPEHVKFIFCTTEADKIPITVLSRCQRFDFAPLPS 219
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
I+ RL I+ E++ EP+AL ++A A GS+RD++++L+Q LS GK+IT V+
Sbjct: 220 QAILDRLAAIAQNEHVEAEPEALAILARRAAGSMRDSQSLLEQLLSYGGKQITVDDVHRA 279
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G ++ L+ + D A + GVD L QL + D A ++G
Sbjct: 280 LGTAKSSRIATLMAAVATRDAAGALCEIDAAAGEGVDLGQLAEQLLGYLRD--AMVLSVG 337
Query: 757 GRS--LTEAEL---------------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
S L L E L A++++ ++ +LR S+ T +++L
Sbjct: 338 ASSDMLLHVALSDEPAVRTLATNWGTETLLAAVQIVDQSLTRLRQSTHGRTLVEVAVVRL 397
Query: 800 GSMHSPDL 807
S+ D+
Sbjct: 398 CSLGQLDM 405
>gi|291333850|gb|ADD93532.1| DNA polymerase III subunits gamma and tau [uncultured marine
bacterium MedDCM-OCT-S04-C191]
Length = 625
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 122/362 (33%), Positives = 197/362 (54%), Gaps = 23/362 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K +P F++LIGQ + ++L N ++ GR+A +LF G RG GKTS A+I + ALNC+
Sbjct: 6 LARKLRPNRFEDLIGQKTISRTLRNAVTSGRVAHAFLFSGSRGVGKTSAARILTKALNCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
A + PCG CR C + S + E+D + +G++ +R + ++ A R+KV+
Sbjct: 66 APEDGNPCGKCRNCIEITENASPDVYEIDAASNRGIENIRELRDNVQYA--PAQCRYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L +++ A LK LEEPP V FI TTD +P++I SRCQ+Y F ++ +
Sbjct: 124 IIDEAHMLTLESFNALLKTLEEPPSHVKFILATTDPHKLPQTIISRCQRYDFVRVPLQQM 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
L K++ E L++ AL++I+ A G +RDA TM+DQ LS G V E++G+
Sbjct: 184 AGFLEKVTVAEQLSISRRALEIISRQAVGGMRDALTMIDQVLSFTGDSAKDEEVLEILGI 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL------ASLIMDIIAGTY 753
V + LE + S E + + L D G D L++QL SLI + G
Sbjct: 244 VDGDSRFAFLESLIGSRADEAMIHFQNLQDHGHDLHELLAQLLKEVKTLSLIQAV--GPE 301
Query: 754 TIGGRSLTEAELE------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
++ + T +++ RL+ +L + E+Q++ S+ T F LLQ+ S
Sbjct: 302 SVLFQDYTRDDVDSYRKLAGETTSSRLQQIFDILLDLEEQMKRSTHARTCFEMALLQIIS 361
Query: 802 MH 803
+
Sbjct: 362 LQ 363
>gi|378835597|ref|YP_005204873.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
GDL-1]
gi|385858421|ref|YP_005904932.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
MCLD]
gi|330723510|gb|AEC45880.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
MCLD]
gi|367460382|gb|AEX13905.1| DNA polymerase III, subunits gamma and tau [Mycoplasma hyorhinis
GDL-1]
Length = 712
Score = 207 bits (526), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 181/296 (61%), Gaps = 8/296 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N + +KY+P +++GQ+ ++Q+L N IS +I YLF GPRGTGKTS AKIF+
Sbjct: 3 KNYLAFYRKYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFAT 62
Query: 516 ALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC TD PC C++ S + +E+DG + G+D +R ++ +++ LP+ S
Sbjct: 63 TLNCSHKTDLFIPCQKCQDS----VNNSFDIIEMDGASNNGVDEIRELINNVN-NLPTNS 117
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++K+++IDE H+L S + AFLK LEEPP+ V+FI TT+ +P +I SR Q++ F K
Sbjct: 118 -QYKIYIIDEVHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSRVQRFNFRK 176
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I + +IV+RL + +E ++ E +AL IA + GSLRDA M++QL+ + +I V
Sbjct: 177 ISEKEIVSRLEYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDV 236
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
L G+ S +KL+ LL+ + + + +++ G +P +L+S L SL+ + I
Sbjct: 237 ENLFGLTSTQKLINLLKEIHNENLQQIFHLISTILEQGANPNILISSLISLVKNFI 292
>gi|325279833|ref|YP_004252375.1| DNA polymerase III, subunits gamma and tau [Odoribacter
splanchnicus DSM 20712]
gi|324311642|gb|ADY32195.1| DNA polymerase III, subunits gamma and tau [Odoribacter
splanchnicus DSM 20712]
Length = 369
Score = 207 bits (526), Expect = 5e-50, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 192/361 (53%), Gaps = 18/361 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P FD ++GQ + +L N I ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENFIVSARKYRPASFDTVVGQLAITSTLRNAIVNHQLAQAYLFTGPRGVGKTTCARIFA 60
Query: 515 AALNCVATD-QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ +PC C C F +G+S N E+D + +D +R +++ + LP
Sbjct: 61 KTINCLNLQPNAEPCNECESCKAFNAGRSLNIHELDAASNNSVDDIRGLVEQVRI-LPQV 119
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++ V++IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 120 G-KYSVYIIDEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++K GD V L+ ISA+E + E ALD+IA ADG++RDA ++ DQ +S GK +T
Sbjct: 179 RMKVGDTVEHLKYISAKEGITAEEAALDVIAQKADGAMRDALSIFDQVVSFCGKNLTYEK 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ + L +L + E E++ G D L++ L D++
Sbjct: 239 VIENLNVLDYDYYFRLTDLFNAGKVGEAFLLFNEIIGKGFDGGNLIAGLGKHFRDVLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + +++ L ALK++ + E Q ++ E+ L++
Sbjct: 299 DPATVQLLEVSAGIKARYAKQAADCQVDFLYEALKIVEQCEMQYKVRMEKRLCIELALIK 358
Query: 799 L 799
L
Sbjct: 359 L 359
>gi|392961242|ref|ZP_10326703.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
DSM 17108]
gi|421055232|ref|ZP_15518195.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
B4]
gi|421072112|ref|ZP_15533224.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
A11]
gi|392439615|gb|EIW17316.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
B4]
gi|392446081|gb|EIW23375.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
A11]
gi|392454076|gb|EIW30926.1| DNA polymerase III, subunits gamma and tau [Pelosinus fermentans
DSM 17108]
Length = 576
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+ L+GQ + +L N I G+IA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRQWRPQDFENLVGQKHISVTLKNAIVSGKIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 IHGPTPEPCNVCLNCQSINAGTSMDVFEIDAASNRGIDEIRELRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKIPATIHSRCQRYDFRRIDAEA 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI-TSSLVNELVG 698
I RL + E LNV PDAL LIA +ADG LRDA ++LDQ + + I T+ V +L+G
Sbjct: 183 IEGRLTAVVQHEGLNVAPDALKLIASHADGGLRDALSILDQCTTMENGIVTAEKVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++ E + + E D + EL+ G + ++ ++A + I+
Sbjct: 243 LIGHEWVWRITEALAERDFKAVLMALGELIALGKEVRQILLEVALYMRSIM 293
>gi|126739558|ref|ZP_01755250.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
gi|126719204|gb|EBA15914.1| DNA polymerase III subunits gamma and tau [Roseobacter sp.
SK209-2-6]
Length = 603
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 16 LARKYRPETFADLVGQDAMVRTLKNAFETNRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 75
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 76 GPDGTGQPTTEPCGTCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVQYRAASA 133
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 134 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 193
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A +RKI+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 194 EPEVMIALMRKIATAEGAEIHEDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 253
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 254 AMLGLADRGRVLDLIDMILRGDAAGALSELGAQYAEGADPLAVLRDLAEI 303
>gi|258645511|ref|ZP_05732980.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
DSM 15470]
gi|260402865|gb|EEW96412.1| putative DNA polymerase III, gamma/tau subunit [Dialister invisus
DSM 15470]
Length = 638
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 173/284 (60%), Gaps = 4/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +K++P F E+IGQ + ++ + R+A YLF GPRGTGKTS A+I + A+NC
Sbjct: 5 SLYRKWRPSTFKEIIGQKHISIPILRAFEQNRLAHAYLFSGPRGTGKTSMARILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C +G S + E+DG + +G+D +R +L+ LP A + KV
Sbjct: 65 LDLKNGNPCNECANCKSINTGASMDVYEIDGASARGVDEIR-VLRESVRTLPVAGNK-KV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F++I D
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEEPPAHVLFILATTEPAKIPLTILSRCQRYEFHRISVND 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I L IS E +L++ P+A LIA+ A+G LRDA ++LDQ S G +++ +V +L+
Sbjct: 183 IKEHLLHISQESHLSLTPEAAALIAVRAEGGLRDALSLLDQCSGASAGNELSAEIVYDLL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G+ +E++++L + + ++ T++ +++ G +P ++S L
Sbjct: 243 GLTDKEQIIDLFHMIVCGKSSATLQLFYKILQDGKEPSAILSDL 286
>gi|313114018|ref|ZP_07799572.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623638|gb|EFQ07039.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 620
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/302 (37%), Positives = 174/302 (57%), Gaps = 3/302 (0%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L +K++P F++++GQ +V +L N I+ R+ YLF G RGTGKT+ AKIF+ A+N
Sbjct: 3 RALYRKWRPQRFEDVVGQRAIVTALKNQITANRVGHAYLFTGVRGTGKTTCAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ PCG C C +G + +E+D + G+D +R L+ +A PSA ++K
Sbjct: 63 CLHPVNGDPCGECEICKGIDNGSILDVVEMDAASNNGVDDIRD-LRDETAYTPSAC-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y F +I
Sbjct: 121 VYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DI R+ I+ EE L + PD +LIA ADG+LRDA ++LD + + +I + +V + G
Sbjct: 181 DIARRVEYIAGEEKLELSPDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V L + + + D A + + +L VD L +L + ++ GG+
Sbjct: 241 VTDRSYLFRISDALEAQDGATALAQLAQLRQQSVDVKRLTEELIAHYRALMLAALP-GGQ 299
Query: 759 SL 760
SL
Sbjct: 300 SL 301
>gi|414154315|ref|ZP_11410634.1| DNA polymerase III, tau subunit [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
gi|411454106|emb|CCO08538.1| DNA polymerase III, tau subunit [Desulfotomaculum hydrothermale
Lam5 = DSM 18033]
Length = 580
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 113/336 (33%), Positives = 192/336 (57%), Gaps = 4/336 (1%)
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
G + ++L + ++P F +++GQ V ++L N + +GR A YLF GPRGTGKT+TAK+
Sbjct: 44 GFVLAYQALYRAWRPQNFKDIVGQQHVTRTLQNALRQGRAAHAYLFCGPRGTGKTTTAKV 103
Query: 513 FSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ ALNC+ D +PC C C G + + +E+D + +G+D +R L+ PS
Sbjct: 104 LAKALNCLNPDHGEPCNRCANCTAVNQGHALDVVEIDAASNRGIDEIRD-LREKVKFTPS 162
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R KV++IDE H+L + + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F
Sbjct: 163 TGSR-KVYIIDEVHMLTDQAFNALLKTLEEPPAHVVFVLATTEAHKVPLTILSRCQRFDF 221
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSS 691
+I+ + VARL++++A + +AL LIA A+G LRDA ++LDQ + + +T+
Sbjct: 222 RRIRPEETVARLKEVAAGAGIQATEEALQLIARAAEGGLRDALSILDQAAAFADETVTAD 281
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
++ ++G V ++ L + + T E + E+ D G D + ++ + + +++
Sbjct: 282 DIHSILGTVQQDILEAMTRCLTAGKTGEALTLVAEIADRGKDLRLFTREMTAYLRELLVK 341
Query: 752 TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSE 787
G L E L L++L +AE++++ SS+
Sbjct: 342 GLEEGHSGLP-VNNETLYSLLQILMQAEQEMKWSSQ 376
>gi|420178411|ref|ZP_14684743.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM057]
gi|420179140|ref|ZP_14685440.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM053]
gi|394246601|gb|EJD91857.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM057]
gi|394254528|gb|EJD99496.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM053]
Length = 568
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|421057033|ref|ZP_15519941.1| DNA polymerase III, subunits gamma and tau, partial [Pelosinus
fermentans B3]
gi|392463761|gb|EIW39642.1| DNA polymerase III, subunits gamma and tau, partial [Pelosinus
fermentans B3]
Length = 541
Score = 206 bits (525), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+ L+GQ + +L N I G+IA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRQWRPQDFENLVGQKHISVTLKNAIVSGKIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 IHGPTPEPCNVCLNCQSINAGTSMDVFEIDAASNRGIDEIRELRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKIPATIHSRCQRYDFRRIDAEA 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI-TSSLVNELVG 698
I RL + E LNV PDAL LIA +ADG LRDA ++LDQ + + I T+ V +L+G
Sbjct: 183 IEGRLTAVVQHEGLNVAPDALKLIASHADGGLRDALSILDQCTTMENGIVTAEKVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++ E + + E D + EL+ G + ++ ++A + I+
Sbjct: 243 LIGHEWVWRITEALAERDFKAVLMALGELIALGKEVRQILLEVALYMRSIM 293
>gi|451980317|ref|ZP_21928713.1| DNA polymerase III, gamma and tau subunits [Nitrospina gracilis
3/211]
gi|451762487|emb|CCQ89944.1| DNA polymerase III, gamma and tau subunits [Nitrospina gracilis
3/211]
Length = 607
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 114/354 (32%), Positives = 194/354 (54%), Gaps = 18/354 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++K++P F ELIGQ +V++L N I RIA YLF G RG GKT+TA++ + ALNC
Sbjct: 7 ARKWRPQKFSELIGQEHIVRTLKNAIELDRIAHAYLFSGTRGVGKTTTARLLAKALNCEQ 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+PC C C + G S + +E+DG + G+ VR +++++ ++S RFKV++
Sbjct: 67 GPTPEPCDTCTHCIEIREGNSLDVLEIDGASNNGVAEVRDLIENVQYS--TSSCRFKVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + A LK LEEPP +VVF+F TT++ +P +I SRCQ + F + I
Sbjct: 125 IDEVHMLSRSAFNALLKTLEEPPPQVVFLFATTELIKIPETILSRCQCFEFKPLNHAQIC 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
A+L I ++N+N++ +L+ IA N GS+RDA+++LDQ ++ G+ + + V ++G+V
Sbjct: 185 AQLELICKKDNINIDQKSLEEIATNGAGSMRDAQSLLDQVIAFAGREVDHASVESVLGIV 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
+ L + ++ ++ D A + +E+ D G D + L + +++ + +L
Sbjct: 245 GQGILEQFMDRVIAGDAAALLGLVQEVADRGKDLSLFCRDLIEYVRNLMFVKVSAKPETL 304
Query: 761 TEA---------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
E ++L +LS AE ++ S F +L+L
Sbjct: 305 VSTRTCDIETLKKQAGHLETDQLHQMFTVLSRAEMDMKRGSLPRLIFEMAVLRL 358
>gi|423262666|ref|YP_007012691.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
SK76]
gi|422035203|gb|AFX74045.1| DNA polymerase III subunits gamma and tau [Mycoplasma hyorhinis
SK76]
Length = 712
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 181/296 (61%), Gaps = 8/296 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N + +KY+P +++GQ+ ++Q+L N IS +I YLF GPRGTGKTS AKIF+
Sbjct: 3 KNYLAFYRKYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFAT 62
Query: 516 ALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC TD PC C++ S + +E+DG + G+D +R ++ +++ LP+ S
Sbjct: 63 TLNCSHKTDLFIPCQKCQDS----VNNSFDIIEMDGASNNGVDEIRELINNVN-NLPTNS 117
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++K+++IDE H+L S + AFLK LEEPP+ V+FI TT+ +P +I SR Q++ F K
Sbjct: 118 -QYKIYIIDEVHMLSSSAFNAFLKTLEEPPKHVIFILATTEAHKIPLTILSRVQRFNFRK 176
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I + +IV+RL + +E ++ E +AL IA + GSLRDA M++QL+ + +I V
Sbjct: 177 ISEKEIVSRLEYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDV 236
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
L G+ S +KL+ LL+ + + + +++ G +P +L+S L SL+ + I
Sbjct: 237 ENLFGLTSTQKLINLLKEIHNENLQQIFHLISTILEQGANPNILISSLISLVKNFI 292
>gi|254487014|ref|ZP_05100219.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
gi|214043883|gb|EEB84521.1| DNA polymerase III, tau subunit [Roseobacter sp. GAI101]
Length = 578
Score = 206 bits (525), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 106/292 (36%), Positives = 171/292 (58%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +N
Sbjct: 8 RVLARKYRPETFVDLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMN 67
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T+PCG C C + G+ + ME+D + G+ +R I+ S +A
Sbjct: 68 CIGPDGNGGPTTEPCGECEHCVAIMEGRHVDVMEMDAASNTGVGNIREIID--SVHYRAA 125
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 126 SARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 185
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ ++ +RKI++ E + DAL LI A+GS RDA ++LDQ +S T+
Sbjct: 186 RIEPEVMITLMRKIASAEGAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTAVQ 245
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 246 VRAMLGLADRGRVLDLFDMILRGDAAGALNELSSQYSDGADPMAVLRDLAEI 297
>gi|329964135|ref|ZP_08301301.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
12057]
gi|328525655|gb|EGF52684.1| DNA polymerase III, subunit gamma and tau [Bacteroides fluxus YIT
12057]
Length = 609
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/395 (31%), Positives = 212/395 (53%), Gaps = 19/395 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMNPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y F+
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFS 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E +L + + + + + ++++ G D ++ L+S + D++
Sbjct: 239 VIENLNVLDYEYYFKLTDFFLDNKVGDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSK 298
Query: 753 YTIG------GRSLTE--------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
T+ G S+ E L L A+KL ++ + R S + TL+Q
Sbjct: 299 DTVTLPLLEVGASIRERYQAQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSREA 832
+ + + D SG S +Q + P++ ++A
Sbjct: 359 VAQLTAEGDDVSSGRSPKQVIKPIFTQPAAPQQQA 393
>gi|83951302|ref|ZP_00960034.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
gi|83836308|gb|EAP75605.1| DNA polymerase III subunits gamma and tau [Roseovarius nubinhibens
ISM]
Length = 620
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + +E+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTEPCGQCEHCTAIMEGRHVDVLEMDAASRTGVGDIREIID--SVAYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 190 EPEVMIALLRRIADAEQAQISDDALALITRAAEGSARDATSLLDQAISHGAGETTAEQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L + D A + G DP+ ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLILKGDAAGALTEISTQYADGADPLAVLRDLAEV 299
>gi|421066197|ref|ZP_15527833.1| DNA polymerase III, subunits gamma and tau, partial [Pelosinus
fermentans A12]
gi|392457242|gb|EIW33938.1| DNA polymerase III, subunits gamma and tau, partial [Pelosinus
fermentans A12]
Length = 540
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 168/291 (57%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+ L+GQ + +L N I G+IA YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRQWRPQDFENLVGQKHISVTLKNAIVSGKIAHAYLFSGPRGTGKTSTAKILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G S + E+D + +G+D +R + + + R+KV
Sbjct: 65 IHGPTPEPCNVCLNCQSINAGTSMDVFEIDAASNRGIDEIRELRE--TVKFAPVDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP VVFI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVVFILATTEAHKIPATIHSRCQRYDFRRIDAEA 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRI-TSSLVNELVG 698
I RL + E LNV PDAL LIA +ADG LRDA ++LDQ + + I T+ V +L+G
Sbjct: 183 IEGRLTAVVQHEGLNVAPDALKLIASHADGGLRDALSILDQCTTMENGIVTAEKVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++ E + + E D + EL+ G + ++ ++A + I+
Sbjct: 243 LIGHEWVWRITEALAERDFKAVLMALGELIALGKEVRQILLEVALYMRSIM 293
>gi|392412739|ref|YP_006449346.1| DNA polymerase III, subunit gamma/tau [Desulfomonile tiedjei DSM
6799]
gi|390625875|gb|AFM27082.1| DNA polymerase III, subunit gamma/tau [Desulfomonile tiedjei DSM
6799]
Length = 579
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 123/370 (33%), Positives = 197/370 (53%), Gaps = 27/370 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E++GQ VVQ+L N+I GR+A +LF G RG GKT+ A+I + +LNC
Sbjct: 7 LARKYRPSTFSEVVGQGHVVQTLSNSIISGRVAHAFLFCGVRGVGKTTVARILAKSLNCS 66
Query: 521 ATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
D PC C C + SG S + E+DG + ++ +R I +++ P + R+K
Sbjct: 67 GRDAADPNPCNSCTSCKEISSGTSVDVQEIDGASNTSVENIREINENIK--YPPVASRYK 124
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+ +IDE H++ + A LK LEEPP V FIF TT+ VP +I SRCQ++ F I
Sbjct: 125 IIIIDEVHMISINAFNALLKTLEEPPSHVKFIFATTESHKVPPTINSRCQRFNFRTISVK 184
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+I + KI +E + E +AL L+A A GS RD ++LDQ ++ +RIT V +++
Sbjct: 185 EIADGMEKILVQEGIQAEEEALILLAREAGGSFRDGLSLLDQIIAFSSQRITVQDVTQIL 244
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V ++ L+ + D AE++K EL G DP ++ L + ++I +I
Sbjct: 245 GIVGKDCFGRLVTAVLDRDPAESLKIVHELFQQGFDPEQIVMDLIQYVRNLIVA-RSIPR 303
Query: 758 RSLTEAELE-------------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+ TE +E L++ +L ++E ++R S W T +
Sbjct: 304 NARTEGLIEAPPSEIQDMEDISGRSSPQELQNLFSILLKSEGEIRRSGN--PWVTMEMTI 361
Query: 799 LGSMHSPDLT 808
L ++P+LT
Sbjct: 362 LKMAYAPELT 371
>gi|242243365|ref|ZP_04797810.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
gi|418614443|ref|ZP_13177411.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU118]
gi|418631222|ref|ZP_13193691.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU128]
gi|418634817|ref|ZP_13197208.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU129]
gi|420176573|ref|ZP_14682993.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM061]
gi|420190539|ref|ZP_14696480.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM037]
gi|420192562|ref|ZP_14698421.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM023]
gi|420205841|ref|ZP_14711364.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM015]
gi|420235837|ref|ZP_14740371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051475]
gi|242233314|gb|EES35626.1| DNA-directed DNA polymerase [Staphylococcus epidermidis W23144]
gi|374820151|gb|EHR84253.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU118]
gi|374835608|gb|EHR99207.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU128]
gi|374836359|gb|EHR99946.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU129]
gi|394241117|gb|EJD86538.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM061]
gi|394258472|gb|EJE03352.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM037]
gi|394261292|gb|EJE06092.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM023]
gi|394269526|gb|EJE14060.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM015]
gi|394302149|gb|EJE45598.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051475]
Length = 568
Score = 206 bits (524), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|260574231|ref|ZP_05842236.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
gi|259023697|gb|EEW26988.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sp. SW2]
Length = 577
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ +V++L N + RIA ++ G RG GKT+TA+I + LNC+
Sbjct: 12 LARKYRPATFADLIGQEAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R ++ S +AS
Sbjct: 72 GPDGKGGPTTEPCGVCEPCRAIAEGRHVDVMEMDAASRTGVGDIREVID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSNAAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VN 694
+ ++ L +I+A E ++ PDAL LI A+GS+RDA +++DQ G TS+ V
Sbjct: 190 EPEVMLTHLARIAALEGASLAPDALALITRAAEGSVRDAMSLMDQAIAHGAGETSAAQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M D A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGDAAGALSELSAQYADGADPMAVLRDLAEI 299
>gi|357060091|ref|ZP_09120865.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
gi|355376981|gb|EHG24221.1| hypothetical protein HMPREF9332_00422 [Alloprevotella rava F0323]
Length = 583
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 119/373 (31%), Positives = 205/373 (54%), Gaps = 18/373 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++N ++KY+P FD ++GQ + +L N IS G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MDNYIVSARKYRPQTFDSVVGQKALTTTLKNAISNGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVATDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ + + C C C F G+S N E+D + +D +R I++ ++ P
Sbjct: 61 KTINCLSPQASGEACNECESCQAFNEGRSMNIFELDAASNNSVDDIRQIIEQVNT--PPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+KVF+IDE H+L + + AFLK LEEPP V+FI TT+ V +I SRCQ Y FN
Sbjct: 119 VGTYKVFIIDEVHMLSAAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
+++ DIVA L+ ++A+E + E +AL++IA ADG +RDA ++ DQ++ + IT
Sbjct: 179 RMEIADIVAHLKNVAAKEGVQAEEEALNVIAQKADGGMRDALSIFDQVASFSEGDITYCK 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ + ++ + ++++ + + +++ G D + M LAS +++
Sbjct: 239 VIEDLNVLDYDYYFKITDELLANNVTQVMLTFNDILRKGFDANIFMGGLASHFRELLVSQ 298
Query: 750 -AGTYTI----------GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T + + + + + L ALKL ++ + R S + TL++
Sbjct: 299 DAATLPLLEVADSVRQRYAKQAQKCKTKFLYKALKLCNDCDINYRTSRNKRLTVEITLIE 358
Query: 799 LGSMHSPDLTQSG 811
+ ++S D SG
Sbjct: 359 VAQLNSDDAPGSG 371
>gi|27469225|ref|NP_765862.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis ATCC 12228]
gi|57866110|ref|YP_187710.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
epidermidis RP62A]
gi|251811247|ref|ZP_04825720.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
BCM-HMP0060]
gi|282874603|ref|ZP_06283485.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis SK135]
gi|293367695|ref|ZP_06614347.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417909558|ref|ZP_12553294.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU037]
gi|417913571|ref|ZP_12557236.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU109]
gi|418605166|ref|ZP_13168495.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU041]
gi|418607212|ref|ZP_13170462.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU057]
gi|418609111|ref|ZP_13172279.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU065]
gi|418612290|ref|ZP_13175334.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU117]
gi|418618389|ref|ZP_13181260.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU120]
gi|418624171|ref|ZP_13186848.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU125]
gi|418626507|ref|ZP_13189105.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU126]
gi|419767994|ref|ZP_14294135.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-250]
gi|419772692|ref|ZP_14298720.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-K]
gi|420166176|ref|ZP_14672864.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM088]
gi|420170844|ref|ZP_14677400.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM070]
gi|420173005|ref|ZP_14679502.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM067]
gi|420182164|ref|ZP_14688305.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM049]
gi|420195620|ref|ZP_14701410.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM021]
gi|420197488|ref|ZP_14703211.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM020]
gi|420202871|ref|ZP_14708458.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM018]
gi|420207886|ref|ZP_14713372.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM008]
gi|420210538|ref|ZP_14715963.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM003]
gi|420211597|ref|ZP_14716956.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM001]
gi|420214800|ref|ZP_14720075.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05005]
gi|420217939|ref|ZP_14723064.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05001]
gi|420220707|ref|ZP_14725665.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04008]
gi|420222665|ref|ZP_14727580.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH08001]
gi|420224747|ref|ZP_14729586.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH06004]
gi|420227608|ref|ZP_14732372.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05003]
gi|420230805|ref|ZP_14735484.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04003]
gi|420233254|ref|ZP_14737871.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051668]
gi|421608522|ref|ZP_16049738.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis AU12-03]
gi|27316774|gb|AAO05949.1|AE016751_244 DNA polymerase III gamma and tau subunits [Staphylococcus
epidermidis ATCC 12228]
gi|57636768|gb|AAW53556.1| DNA polymerase III, gamma and tau subunits [Staphylococcus
epidermidis RP62A]
gi|251805208|gb|EES57865.1| DNA-directed DNA polymerase [Staphylococcus epidermidis
BCM-HMP0060]
gi|281296527|gb|EFA89039.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis SK135]
gi|291318265|gb|EFE58659.1| DNA polymerase III, gamma/tau subunit DnaX [Staphylococcus
epidermidis M23864:W2(grey)]
gi|341652862|gb|EGS76637.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU037]
gi|341655265|gb|EGS78997.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU109]
gi|374402864|gb|EHQ73879.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU041]
gi|374405706|gb|EHQ76625.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU057]
gi|374408984|gb|EHQ79789.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU065]
gi|374815887|gb|EHR80108.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU120]
gi|374819592|gb|EHR83712.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU117]
gi|374827895|gb|EHR91745.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU125]
gi|374831577|gb|EHR95314.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU126]
gi|383359025|gb|EID36462.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-K]
gi|383361420|gb|EID38793.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus IS-250]
gi|394234231|gb|EJD79816.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM088]
gi|394239451|gb|EJD84892.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM070]
gi|394241271|gb|EJD86689.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM067]
gi|394250494|gb|EJD95679.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM049]
gi|394263119|gb|EJE07863.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM021]
gi|394265589|gb|EJE10240.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM020]
gi|394268890|gb|EJE13437.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM018]
gi|394275119|gb|EJE19511.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM008]
gi|394276150|gb|EJE20500.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM003]
gi|394280932|gb|EJE25203.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM001]
gi|394282928|gb|EJE27108.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05005]
gi|394285746|gb|EJE29816.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04008]
gi|394286178|gb|EJE30204.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05001]
gi|394288619|gb|EJE32523.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH08001]
gi|394294427|gb|EJE38110.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH06004]
gi|394296227|gb|EJE39857.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH04003]
gi|394296459|gb|EJE40084.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH05003]
gi|394300462|gb|EJE43966.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIH051668]
gi|406655682|gb|EKC82105.1| DNA polymerase III subunits gamma and tau [Staphylococcus
epidermidis AU12-03]
Length = 568
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|416127711|ref|ZP_11597028.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
epidermidis FRI909]
gi|418329654|ref|ZP_12940708.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis 14.1.R1.SE]
gi|319399737|gb|EFV87985.1| DNA polymerase III, subunits gamma and tau [Staphylococcus
epidermidis FRI909]
gi|365229902|gb|EHM71027.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 568
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|163744802|ref|ZP_02152162.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
gi|161381620|gb|EDQ06029.1| DNA polymerase III subunits gamma and tau [Oceanibulbus indolifex
HEL-45]
Length = 583
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 169/292 (57%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +N
Sbjct: 8 RVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKGMN 67
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T PCG C C + G+ + ME+D + G+ +R I+ S +A
Sbjct: 68 CIGPDGNGGPTTDPCGVCEHCTAIMEGRHVDVMEMDAASNTGVANIREIID--SVHYRAA 125
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 126 SARYKVYIIDEVHMLSTGAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 185
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ ++A LRKI+ E + DAL LI A+GS RDA ++LDQ +S +
Sbjct: 186 RIEPEVMIALLRKIATAETAEITDDALALITRAAEGSARDATSLLDQAISHGAGETGAEQ 245
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 246 VRAMLGLADRGRVLDLFDMVLRGDAAAALTELSGQYADGADPMAVLRDLAEI 297
>gi|381205565|ref|ZP_09912636.1| DNA polymerase III subunits gamma and tau [SAR324 cluster bacterium
JCVI-SC AAA005]
Length = 645
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 190/359 (52%), Gaps = 18/359 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K +P F +LIGQ ++ Q L N I R+A +LF G RG GKTS A+I + ALNC+
Sbjct: 19 LARKLRPQRFSDLIGQEVIAQILQNAIRSNRVAHAFLFSGSRGVGKTSAARILTKALNCL 78
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
D PC C C + S S + E+D + +G++ +R + +++ A R+KV+
Sbjct: 79 EPDNVDPCNACENCLEISSNASADVYEIDAASNRGIENIRELRENVKYA--PARCRYKVY 136
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L +++ A LK LEEPP V FI TTD VP +I SRCQ+Y F +I +
Sbjct: 137 IIDEAHMLTLESFNALLKTLEEPPNHVKFILATTDPHKVPVTILSRCQRYDFQRIPLPQM 196
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L + + +ENL + P +L+LIA +A G +RDA T LDQ LS G++ + S V +++G+
Sbjct: 197 LEFLNQAAVQENLQLSPKSLELIARHATGGMRDALTSLDQVLSFAGEQASESEVRQILGI 256
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+LLE ++ +EL G D L+ +L + + G S
Sbjct: 257 ADASMRFQLLECLFRKQLGSAMQAFQELYQHGFDLQELLQELLQSVKTLSLYLALSGDLS 316
Query: 760 LTE-AELER--------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
E AE E+ L+ LL + E+Q++ S F TLLQL S+
Sbjct: 317 FAEVAEDEQEQYCQLASLTTQGELQQMFHLLMQLEEQMKRSVHARICFEMTLLQLASVQ 375
>gi|187251871|ref|YP_001876353.1| DNA polymerase III subunits gamma and tau [Elusimicrobium minutum
Pei191]
gi|186972031|gb|ACC99016.1| DNA polymerase III, subunits gamma and tau [Elusimicrobium minutum
Pei191]
Length = 627
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 170/294 (57%), Gaps = 5/294 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SLS KY+P F++++GQ + ++L N I GR+ YLF GPRG GKT++A+IF+ ALNC
Sbjct: 13 SLSNKYRPQTFEDVVGQETISKTLTNAIKLGRVGHAYLFYGPRGCGKTTSARIFAKALNC 72
Query: 520 VAT---DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
PCG C +C + +G + +E+D + +D++R + + L + R
Sbjct: 73 TGNGNKPAASPCGKCPQCIEIANGSDMDVLELDAASNTQVDKIREAIID-TVALAATRDR 131
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+F++DE H+L ++ A LK +EEPP VVFI TT+ VP +I SRCQ + F I
Sbjct: 132 FKIFILDEVHMLSDSSFNALLKTIEEPPAHVVFILATTEKHKVPATISSRCQTFRFRPIT 191
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNE 695
DI A L ++ +EN+N+EP A+ +IA A G+LRDA T+LD+ ++ IT LV +
Sbjct: 192 QEDISAHLTALAQKENINIEPKAVQIIASQAGGALRDALTILDRAIAYSDGSITEELVID 251
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
++G++ E+ L ++ + + E + G DP+ + L + + D+
Sbjct: 252 MLGLMPEDILKAAVKAVLKKNYNEMHTVFETIQMEGFDPLSFLRDLKNALGDLF 305
>gi|418325149|ref|ZP_12936357.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU071]
gi|420163750|ref|ZP_14670492.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM095]
gi|420168006|ref|ZP_14674657.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM087]
gi|420185132|ref|ZP_14691231.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM040]
gi|365228753|gb|EHM69931.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU071]
gi|394234039|gb|EJD79628.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM095]
gi|394237400|gb|EJD82890.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM087]
gi|394255514|gb|EJE00464.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM040]
Length = 568
Score = 206 bits (524), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|15612597|ref|NP_240900.1| DNA polymerase III subunits gamma and tau [Bacillus halodurans
C-125]
gi|10172646|dbj|BAB03753.1| DNA polymerase III gamma and tau subunits [Bacillus halodurans
C-125]
Length = 564
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 172/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P +++GQ + ++L N + + + + YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRVWRPQKLQDVVGQEHITKTLQNALVQEKFSHAYLFSGPRGTGKTSAAKIIAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC CR C SG + ME+D + G+D +R I H+ PS R+K
Sbjct: 64 CEQAPIAEPCNECRACKGITSGSIVDVMEIDAASNNGVDEIRDIRDHVKFA-PSEV-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SRCQ++ F +I +
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPLTIISRCQRFDFKRISND 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V R+++I E + E +AL L+A A+G +RD+ ++LDQ +S +R+T V +
Sbjct: 182 ALVGRMKEILTHEGIEAEDEALVLVARAAEGGMRDSLSLLDQAISFADERVTVEDVLAIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS E L +++E A +TAE ++ +L+ +G DP+ + L D++
Sbjct: 242 GAVSHEVLTQVVESAQKGETAEALQLVNQLLANGKDPLRFVEDLIYYYRDLM 293
>gi|418628108|ref|ZP_13190667.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU127]
gi|374838867|gb|EHS02401.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU127]
Length = 568
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|331087183|ref|ZP_08336253.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408869|gb|EGG88330.1| hypothetical protein HMPREF0987_02556 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 521
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 224/426 (52%), Gaps = 31/426 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +VQ+L N I RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S N +E+D + G+D +R I + + A P+ ++KV
Sbjct: 65 EHPVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I AR+ ++ E++ VE A+ IA ADGS+RDA ++LDQ LG+++ V E++
Sbjct: 183 IAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLKYDDVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ----LASLIM----DII 749
G V + +L M+ D A ++ EL+ G + L++ L +L++ D +
Sbjct: 243 GAVDTDIFSRMLRQVMARDVAGVLQTVEELVMQGRELTQLVADFTWYLRNLLLVKSSDNM 302
Query: 750 AGTYTIGGRSLTE-------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +L + E + L +++ S+ Q++ ++++ TL++L
Sbjct: 303 EDVLDVSTENLIQLKEEAKMIESDMLFRYIRIFSDLSNQIKYATQKRVLLEVTLIKLC-- 360
Query: 803 HSPDLTQSGSSRRQSSRTTEE-----DPSSTSREAVVY---KRMSGPQYMPQ-NAVSPAS 853
+P + + S R EE D S+ + VVY ++ +GP P+ P
Sbjct: 361 -TPAMETTQDSLLDRIRAVEEKVEKADFSTQGEQRVVYVQEEKQAGPVERPKLEKAIPDD 419
Query: 854 LREPVN 859
+RE V
Sbjct: 420 VREVVQ 425
>gi|325663669|ref|ZP_08152073.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470162|gb|EGC73395.1| hypothetical protein HMPREF0490_02814 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 521
Score = 206 bits (524), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 137/426 (32%), Positives = 224/426 (52%), Gaps = 31/426 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +VQ+L N I RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKFRPGGFEDVKGQDHIVQTLKNQIKAERIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S N +E+D + G+D +R I + + A P+ ++KV
Sbjct: 65 EHPVDGSPCGQCAMCQKIAEGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I AR+ ++ E++ VE A+ IA ADGS+RDA ++LDQ LG+++ V E++
Sbjct: 183 IAARMSQLMETEHVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLKYDDVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ----LASLIM----DII 749
G V + +L M+ D A ++ EL+ G + L++ L +L++ D +
Sbjct: 243 GAVDTDIFSRMLRQVMARDVAGVLQTVEELVMQGRELTQLVADFTWYLRNLLLVKSSDNM 302
Query: 750 AGTYTIGGRSLTE-------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +L + E + L +++ S+ Q++ ++++ TL++L
Sbjct: 303 EDVLDVSTENLIQLKEEAKMIESDMLFRYIRIFSDLSNQIKYATQKRVLLEVTLIKLC-- 360
Query: 803 HSPDLTQSGSSRRQSSRTTEE-----DPSSTSREAVVY---KRMSGPQYMPQ-NAVSPAS 853
+P + + S R EE D S+ + VVY ++ +GP P+ P
Sbjct: 361 -TPAMETTQDSLLDRIRAVEEKVEKADFSAQGEQRVVYVQEEKQAGPVERPKLEKAIPDD 419
Query: 854 LREPVN 859
+RE V
Sbjct: 420 VREVVQ 425
>gi|159043203|ref|YP_001531997.1| DNA polymerase III subunits gamma and tau [Dinoroseobacter shibae
DFL 12]
gi|157910963|gb|ABV92396.1| DNA polymerase III [Dinoroseobacter shibae DFL 12]
Length = 587
Score = 206 bits (523), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 169/291 (58%), Gaps = 9/291 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC
Sbjct: 12 LARKYRPATFADLIGQDAMVRTLRNAFQADRIAQAFMMTGIRGTGKTTTARIIAKGMNCT 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRY-ILKHLSAGLPSAS 574
D T PCG C C ++G+ + +E+DG ++ +D +R +L S AS
Sbjct: 72 GADGAGGPTTDPCGQCDNCRGIMAGQHVDVIEMDGASQTKIDDIRANVLD--SVYYAPAS 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+F+IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 130 ARYKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRR 189
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ ++A LR+I+ E + DAL LI A+GS+RDA ++LDQ +S T+ V
Sbjct: 190 IEPEVMIAHLRRIAGLERAEITDDALALITRAAEGSVRDAMSLLDQAISHGAGETTAEQV 249
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L +L M D A + G DPM ++ LA +
Sbjct: 250 RAMLGLADRGRVMDLFDLVMRGDAAGALTELSAQYSDGADPMAVLRDLAEV 300
>gi|395243165|ref|ZP_10420152.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
gi|394484395|emb|CCI81160.1| DNA polymerase III, gamma and tau subunits [Lactobacillus hominis
CRBIP 24.179]
Length = 610
Score = 206 bits (523), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 113/296 (38%), Positives = 174/296 (58%), Gaps = 7/296 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I R +I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDAVVGQEAITDTLKNAIKRQKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCKAADQGSLNDIIEIDAASNNGVDEIREIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYTFKRIDSQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+V+R+ I +E + EP ALD+IA ADG +RDA ++LDQ LS +I ++
Sbjct: 182 DLVSRMTYILNQEGVEFEPKALDIIAQVADGGMRDALSILDQILSYDQDKIKYEDALKIT 241
Query: 698 GVVSEEKLLE-LLELA-MSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
G +EK+ LL+LA SD A +K +EL+D+G ++ ++ +L + ++
Sbjct: 242 GFADQEKIENLLLDLANQKSDVA--LKTVKELLDNGASSKNILDEIIALSVKVMMA 295
>gi|401564608|ref|ZP_10805488.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC6]
gi|400188653|gb|EJO22802.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC6]
Length = 612
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 115/343 (33%), Positives = 192/343 (55%), Gaps = 17/343 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPETFADLVGQEHISRTLARAVTSGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R + + S R+K+
Sbjct: 65 AEGPTLTPCGVCDSCRAISDGSSMDVFEIDAASNRGIDEIRDLRE--SVKFAPTEGRYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP RV+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPDRVLFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + AE + + DAL +IA+ ADG +RDA ++LDQ + L + +T+ V E +G
Sbjct: 183 IRDRLVHVCAESGIAADEDALGIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTIG 756
+V + ++ A + + EL+ +G + ++++LA + I+ T+G
Sbjct: 243 LVGRAWIEKMALQIADRAAAPLITQLGELLQNGRELRQILAELAQYFRSLMIVGVGGTLG 302
Query: 757 GRSLTEAEL------------ERLKHALKLLSEAEKQLRLSSE 787
L + + E + L+ L+EA +++R+S +
Sbjct: 303 SAELPDGQAEALREAAARFTQEEIMVILRKLNEAMQEIRVSPQ 345
>gi|336322585|ref|YP_004602552.1| DNA polymerase III subunits gamma and tau [Flexistipes sinusarabici
DSM 4947]
gi|336106166|gb|AEI13984.1| DNA polymerase III, subunits gamma and tau [Flexistipes
sinusarabici DSM 4947]
Length = 534
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/322 (33%), Positives = 180/322 (55%), Gaps = 4/322 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++KY+P F E++GQ+ V+++L N I GRI+ YLF GPRG GKTSTA+IF+ A+NC
Sbjct: 5 ALARKYRPQNFHEIVGQDFVIKTLSNAIELGRISHAYLFTGPRGVGKTSTARIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
D PC C C + G S + +E+DG + +G+D +R + + S A +K+
Sbjct: 65 KTPDGVNPCNTCEICEEITDGSSMDVIEIDGASNRGIDEIRQLRE--SVRFIPAKCNYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TTD +P +I SRCQ+Y F KI
Sbjct: 123 YIIDEVHMLTEPAFNALLKTLEEPPEHVIFIMATTDAHRIPPTILSRCQRYDFKKIPADF 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVG 698
+ L + +E + + DA+ +I N++G +RDA +++DQ+ + G + + L+G
Sbjct: 183 MYDYLSGVLQKEEIEHDRDAVSVIMRNSEGCMRDALSLVDQIVAYSGGTVNIQDTSYLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ + L EL ++ D VK E+ G+D + + + + I+ T G
Sbjct: 243 LSDYTIINRLFELVLNEDITAVVKHTEEINLKGLDYIFITKTIIEYLKHIMFAKAT-GYF 301
Query: 759 SLTEAELERLKHALKLLSEAEK 780
E E +K+ K++ + ++
Sbjct: 302 PEKELTSEEIKYFTKIMEKIDE 323
>gi|406830133|ref|ZP_11089727.1| DNA polymerase III subunits gamma and tau [Schlesneria paludicola
DSM 18645]
Length = 592
Score = 206 bits (523), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 171/290 (58%), Gaps = 3/290 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++++P F E++GQ V Q+L N I GR+A YLF G RG GKTS A+IF+ ALNC
Sbjct: 8 LARRFRPQTFTEVVGQERVAQTLRNAIHDGRVAHAYLFTGARGVGKTSMARIFAKALNCP 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C +C G+ + E+DG + +G+D +R + +++ + S +FK++
Sbjct: 68 DAVDGVPCNVCEQCRGISVGQDVDVSEIDGASNRGIDDIRSLRANVN--IKSMRSKFKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ + VP +I SRCQ++ F I +I
Sbjct: 126 IIDEVHMLTKEAFNALLKTLEEPPPMVKFIFCTTESNKVPDTILSRCQRFDFGTISTDNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGV 699
RLR+++ E V+ AL+L+A A GS+RD++++ DQL G K+I+S+ V+ L+G
Sbjct: 186 TIRLRQLAEAEGFQVDEAALELVARRAAGSMRDSQSLFDQLLAFGSKQISSADVHRLLGT 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+++L +++ + + + R M GV QL + D++
Sbjct: 246 APDDRLTGMVDALIERRQGDALMRLDAAMREGVQLEAFTDQLVAYFRDLM 295
>gi|299820909|ref|ZP_07052798.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
gi|299817930|gb|EFI85165.1| DNA polymerase III, gamma/tau subunit DnaX [Listeria grayi DSM
20601]
Length = 580
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/381 (30%), Positives = 201/381 (52%), Gaps = 21/381 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ+ V ++L N I + +I+ YLF GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRVFRPQAFQDIVGQSHVTKTLQNAIVQNKISHAYLFSGPRGTGKTSAAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + + +E+D + G++ +R I + + P+ S ++K
Sbjct: 64 CERSTDGEPCNECDTCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYA-PTNS-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI A + I E++ E AL +I A+G LRDA ++LDQ+ G + + E+
Sbjct: 182 DITAHMASILDSESIQYEDKALQIIGRAAEGGLRDALSLLDQVISFGSEEVGVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V++ L +L+E M D + + L+ G DP+ L+ L DI+ Y
Sbjct: 242 GSVAQNLLTDLVEAVMDKDPKQAISTLSSLLAEGKDPVRLVEDLLVFFRDIL--LYQKAP 299
Query: 758 -------RSLTEAELERLK---------HALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
R+L + E L H +K+L++ ++Q+R S+ + ++Q+
Sbjct: 300 DLDEALERALVDDSFEALAKKADAAVIYHCVKVLNDTQQQMRFSNHPGIYVEVAMVQMTQ 359
Query: 802 MHSPDLTQSGSSRRQSSRTTE 822
++TQ+ R E
Sbjct: 360 SGQTEVTQTAGPAADDERLQE 380
>gi|358066466|ref|ZP_09152992.1| hypothetical protein HMPREF9473_05055 [Clostridium hathewayi
WAL-18680]
gi|356695218|gb|EHI56851.1| hypothetical protein HMPREF9473_05055 [Clostridium hathewayi
WAL-18680]
Length = 535
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 122/357 (34%), Positives = 189/357 (52%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +VQ+L N I+ RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPTSFEDVKGQDHIVQTLKNQITSQRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + +S S N ME+D + G++ +R I + + P +KV
Sbjct: 65 EHPIDGSPCNECASCKNILSASSLNVMEIDAASNNGVENIREIREQVQ--YPPTEGNYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT++ +P ++ SRCQ+Y F +I G
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQRYDFKRITIGT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
+ RLR++S E++ VE AL IA ADGS+RDA ++LDQ G+++T E++
Sbjct: 183 LADRLRELSLAEHIEVEDKALTYIAKAADGSMRDALSLLDQCVAFHYGEKLTYDQALEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGV-------DPMVLMSQLASL------ 744
G V +L T + + + EL+ G D + M L L
Sbjct: 243 GAVDTTVFSQLFRAVREEKTKDCIYKLEELVIQGRELSQFVNDFIWYMRNLLVLKTTEAA 302
Query: 745 --IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ A + A+ E L +++ SE QLR +S++ ++L
Sbjct: 303 EDILDMSADNRKMLEEDAKLADEETLMRYIRIFSELSNQLRYASQKRVLVELAFIKL 359
>gi|427427146|ref|ZP_18917191.1| DNA polymerase III subunits gamma and tau [Caenispirillum salinarum
AK4]
gi|425883847|gb|EKV32522.1| DNA polymerase III subunits gamma and tau [Caenispirillum salinarum
AK4]
Length = 644
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 170/292 (58%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ+ +V++L N I GR+A Y+ G RG GKT+TA+I + ALN
Sbjct: 18 RVLARKYRPTDFTTLIGQDALVRTLSNAIESGRLAQAYVLTGVRGVGKTTTARIIARALN 77
Query: 519 CVATDQT-----KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T PCG C C + + +E+D ++ G++ +R IL+ + SA
Sbjct: 78 CIGEDGTGGPTVAPCGVCEHCRAISEDRHVDVLEMDAASRTGVNDIREILEGVRYRPTSA 137
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K++++DE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 138 --RYKIYIVDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 195
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+++ + I+ E ++EP AL ++A ADGS+RD ++LDQ ++ G +T
Sbjct: 196 RVEASTLANHFAAIAEREGADIEPAALSMVARAADGSVRDGLSLLDQAIAHGGGTVTEQQ 255
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ + +L E AM D ++ + E +G +P V++ + L
Sbjct: 256 VRDMLGLADRAVVFDLFEAAMGGDVSQALSIIGEQYTAGAEPTVILQDMLEL 307
>gi|304382042|ref|ZP_07364594.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
gi|304336796|gb|EFM03020.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella marshii DSM
16973]
Length = 592
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/374 (30%), Positives = 201/374 (53%), Gaps = 18/374 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC+
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLRNAVKSGKLAHAYLFCGPRGVGKTTCARIFARAINCMN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + + CG C C F +S N E+D + ++ ++ ++ +P ++KVF
Sbjct: 68 PTTEGEACGTCESCKAFNEQRSYNIFELDAASNNSVENIKALMDQ--TRIPPQVGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ D
Sbjct: 126 IIDEVHMLSTQAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVADT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+A L++++ +E + E +AL +IA ADG +RDA ++ DQ S +IT V E + V
Sbjct: 186 IAHLKRVAEQEGIGYEEEALAVIAEKADGGMRDALSIFDQSASFCQGQITYKKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT--YTIGG 757
+ + ++++A+ + + + ++ G D + + LAS +++ T+
Sbjct: 246 LDSDNYFRIIDMALKQEVSNMMVLLDTVIGKGFDGGIFIQGLASYTRNVLMAKDERTLPL 305
Query: 758 RSLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+++ + ER K ALKL+++ + R S+ + TL+Q+ + P
Sbjct: 306 LEVSKKQAERYKEQAQRCPTDFMYKALKLMNDCDVHYRQSNNKRLLVELTLIQIAQLLQP 365
Query: 806 DLTQSGSSRRQSSR 819
D + RR R
Sbjct: 366 DDDDESAGRRPGKR 379
>gi|417912534|ref|ZP_12556225.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU105]
gi|418620823|ref|ZP_13183618.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU123]
gi|420188984|ref|ZP_14694983.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM039]
gi|341650575|gb|EGS74394.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU105]
gi|374831130|gb|EHR94878.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU123]
gi|394253796|gb|EJD98791.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM039]
Length = 568
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKGAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|383811331|ref|ZP_09966800.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
gi|383356081|gb|EID33596.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 306 str. F0472]
Length = 604
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 202/361 (55%), Gaps = 18/361 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T++ + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTNEGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L+ ++ +EN+ + AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 INHLKAVAEKENIQYDEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ E+ ++ LA+ + ++ + +++ G D L++ LAS + +++ T+
Sbjct: 246 LDEDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDVQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++E + +R L +ALK++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSEQQRKRYQEQAQKCPTLFLYNALKIMNQCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 D 806
D
Sbjct: 366 D 366
>gi|90419786|ref|ZP_01227695.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
gi|90335827|gb|EAS49575.1| DNA polymerase III, subunits gamma/tau [Aurantimonas manganoxydans
SI85-9A1]
Length = 639
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 175/299 (58%), Gaps = 7/299 (2%)
Query: 451 EEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA 510
E G R L++KY+P FD+LIGQ +V++L N GRIA ++ G RG GKT+TA
Sbjct: 13 EAGAAAPYRVLARKYRPRSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTA 72
Query: 511 KIFSAALNCVATDQTKPCGYCRE----CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
+I + ALN + +P + E C + G+ + +E+D + G+D VR I+ +
Sbjct: 73 RILARALNYQTDEIDQPTIHMGEPGIHCQAIMEGRHVDVVEMDAASHTGIDDVREIIAQV 132
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
SA R+KV++IDE H+L ++ + LK LEEPP+ V F+F TT+I VP ++ SR
Sbjct: 133 RYRPVSA--RYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPVTVLSR 190
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
CQ++ +++ ++A L KI+ E++ V+ DAL LIA A+GS+RDA ++ DQ G
Sbjct: 191 CQRFDLRRVESATLMAHLTKIATAEHVEVDEDALRLIARAAEGSVRDALSLTDQAIAHGA 250
Query: 687 -RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+T+ V +++G+ ++++L E M D A +K R+ G DP V+++ LA
Sbjct: 251 GAVTAQAVRDMLGLADRVRIIDLFEYLMKGDAAAALKELRDQYVVGADPAVVLADLADF 309
>gi|420200178|ref|ZP_14705840.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM031]
gi|394270227|gb|EJE14748.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis NIHLM031]
Length = 568
Score = 205 bits (522), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDNGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RD+ +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDSLSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|294678278|ref|YP_003578893.1| DNA polymerase III subunit gamma/tau [Rhodobacter capsulatus SB
1003]
gi|294477098|gb|ADE86486.1| DNA polymerase III, gamma/tau subunit [Rhodobacter capsulatus SB
1003]
Length = 589
Score = 205 bits (521), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ +V++L N + RIA ++ G RGTGKT+TA+I + LNC+
Sbjct: 17 LARKYRPATFADLIGQEAMVRTLKNAFAASRIAQAFIMTGIRGTGKTTTARIIAKGLNCI 76
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PC C C G+ + +E+D ++ G+ +R I++ S +AS
Sbjct: 77 GPDGTGQPTTEPCLVCEHCRAIAEGRHVDVLEMDAASRTGVGDIREIIE--SVNYRAASA 134
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 135 RYKVYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 194
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ L K++ +EN + DAL LI A+GS+RDA ++LDQ +S T+ V
Sbjct: 195 EPEVMINHLSKVATKENAQIAEDALALITRAAEGSVRDAMSLLDQAISHGAGETTADQVR 254
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + D A + G DPM ++ LA +
Sbjct: 255 AMLGLADRARVLDLFDMILKGDAAAALTELGAQYSDGADPMAVLRDLAEI 304
>gi|304372902|ref|YP_003856111.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
HUB-1]
gi|304309093|gb|ADM21573.1| DNA polymerase III gamma and tau subunit [Mycoplasma hyorhinis
HUB-1]
Length = 712
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 181/296 (61%), Gaps = 8/296 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N + +KY+P +++GQ+ ++Q+L N IS +I YLF GPRGTGKTS AKIF+
Sbjct: 3 KNYLAFYRKYRPTTLVDVVGQDFIIQTLKNIISTNQIFHAYLFSGPRGTGKTSVAKIFAT 62
Query: 516 ALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC TD PC C++ S + +E+DG + G+D +R ++ +++ LP+ S
Sbjct: 63 TLNCSHKTDLFIPCQKCQDS----VNNSFDIIEMDGASNNGVDEIRELINNVN-NLPTNS 117
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++K+++IDE H+L S + AFLK LEEPP+ V+FI TT+ +P +I SR Q++ F K
Sbjct: 118 -QYKIYIIDEVHMLSSSAFNAFLKTLEEPPKYVIFILATTEAHKIPLTILSRVQRFNFRK 176
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I + +IV+RL + +E ++ E +AL IA + GSLRDA M++QL+ + +I V
Sbjct: 177 ISEKEIVSRLEYVLEKEEISYEKEALWAIAQLSSGSLRDALAMVEQLNNFSRSKIHMIDV 236
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
L G+ S +KL+ LL+ + + + +++ G +P +L+S L SL+ + I
Sbjct: 237 ENLFGLTSTQKLINLLKEIHNENLQQISHLISTILEQGANPNILISSLISLVKNFI 292
>gi|359788041|ref|ZP_09291024.1| DNA polymerase III subunits gamma and tau, partial [Mesorhizobium
alhagi CCNWXJ12-2]
gi|359256094|gb|EHK58970.1| DNA polymerase III subunits gamma and tau, partial [Mesorhizobium
alhagi CCNWXJ12-2]
Length = 392
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/291 (37%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ +V++L N S GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 17 RVLARKYRPSDFSGLIGQEPMVRTLTNAFSSGRIAQAWMLTGVRGVGKTTTARILARALN 76
Query: 519 CVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+ +P C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 77 YKTAEIDQPSVELTTLGEHCKAIMDGRHVDVIEMDAASHTGIDDIRDIIEQVRYAPVSA- 135
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 136 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 194
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
+ G + A LR I++ E + V DAL +IA A+GS+RDA+++LDQ G R+T+ V
Sbjct: 195 VDAGTLTANLRNIASLEEIEVNDDALAMIARAAEGSVRDAQSILDQAIAHGAGRVTAEAV 254
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D A + R D+G DP+ +++ LA
Sbjct: 255 RSMLGLADRARIVDLFEHVMKGDAAAALNEFRAQYDTGADPVAVLTDLAEF 305
>gi|84685226|ref|ZP_01013125.1| DNA polymerase III subunits gamma and tau [Maritimibacter
alkaliphilus HTCC2654]
gi|84666958|gb|EAQ13429.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2654]
Length = 576
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ +V++L N + RIA ++ G RG GKT+TA+I + +NC+
Sbjct: 10 LARKYRPETFADLIGQEAMVRTLRNAFAADRIAQAFVMTGIRGIGKTTTARIIAKGMNCI 69
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D +PCG C C G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 70 GPDGNGGPTVEPCGECEHCVAIAEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 127
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 128 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 187
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ D++ LR+I+ EE + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 188 EPEDMIGLLRRIATEEKAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 247
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DPM ++ LA +
Sbjct: 248 AMLGLADRGRVLDLIDMILRGDAAGALAELSAQYADGADPMAVLRDLAEV 297
>gi|83588901|ref|YP_428910.1| DNA polymerase III subunits gamma and tau [Moorella thermoacetica
ATCC 39073]
gi|83571815|gb|ABC18367.1| DNA polymerase III, subunits gamma and tau [Moorella thermoacetica
ATCC 39073]
Length = 589
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 202/378 (53%), Gaps = 21/378 (5%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+ ++L ++++P F E++GQ + ++L N + GR+ YLF GPRGTGKTSTAKI +
Sbjct: 1 MAQYQALYRQWRPRTFAEVVGQEHITRTLRNALRTGRLVHAYLFCGPRGTGKTSTAKILA 60
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
A+NC+A + +PC C C ++G S + +E+D + +G+D +R +++ + G
Sbjct: 61 RAINCLAPREGEPCNECANCRRILAGNSLDVLEMDAASNRGIDEIRNLIEKIPLG--PVE 118
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L + + A LK LEEPP VFI TT+ V +I SRCQ++ F+
Sbjct: 119 GRYKVYIIDEVHMLTQEAFNALLKTLEEPPAHAVFILATTEPRKVLPTILSRCQRFDFHP 178
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR--ITSSL 692
+ I RL++++A + +EP AL L++ A G LRDA ++LDQ+ G R +T+
Sbjct: 179 LTVQAIAGRLQEVAAANGVEIEPGALSLLSRKAAGGLRDALSLLDQILASGTRGPVTAGQ 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS-----LIMD 747
V +G + LL L + + D A + + + SG++P L+ L L++
Sbjct: 239 VAVTLGTARLDTLLALTDALATGDGAGVLNLVDKALASGIEPRRLLEDLLDHTRNLLLLK 298
Query: 748 IIAGTYTIGGRSLTEAEL----------ERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
+ G ++ G E E RL ++ L + LR S++ TL
Sbjct: 299 VDPGAGSLTGLLPEEVEQVAAQARQFDHHRLLDLMERLQQGGAALRRSNQPRVILEMTL- 357
Query: 798 QLGSMHSPDLTQSGSSRR 815
G + +P + G +RR
Sbjct: 358 -AGFLVAPGPSLEGLARR 374
>gi|374855260|dbj|BAL58121.1| DNA polymerase III subunit gamma/tau [uncultured Acidobacteria
bacterium]
Length = 550
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 122/363 (33%), Positives = 195/363 (53%), Gaps = 25/363 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P F++L+GQ + ++L N + R Y+F GPRG GKT+TA++F+ ALNCV
Sbjct: 5 IARKWRPQRFEDLVGQEAIARTLQNALRYRRWHHAYIFAGPRGVGKTTTARLFAKALNCV 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR-YILKHLSAGLPSASPRFKV 579
+PC C C + + G + + +E+D + G+D VR IL L+ G A R+++
Sbjct: 65 QGPTPEPCNECPPCREIVQGNALDVLEIDAASHTGVDNVRQVILDTLALG--PARDRYRI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDECH L + + A LK LEEPP V+F+ TT++ VP +I SRCQ + F I +G
Sbjct: 123 FIIDECHQLSTSAFNALLKTLEEPPPHVLFLMATTELHKVPATILSRCQIFEFRLIPEGK 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ---LSLLGKRITSSLVNEL 696
I RLR+I+ E + + AL IA GSLRDA+++L+Q + G+ I+ +V
Sbjct: 183 IAERLRRIADAEGIAISDSALRRIARAGQGSLRDAQSLLEQAVSFAGPGEPISDEVVTAA 242
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G++ E LL E D A ++ +EL + G D L + +++ +
Sbjct: 243 LGLIGTETLLLAAEAIADRDGARLLRLVQELSERGYDLRHFCRDLMAHFRNLLVA--KVI 300
Query: 757 GR-----SLTEAEL------------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
GR L+E E+ E + A + L+E E+ LR +SE LL+L
Sbjct: 301 GRDRELLPLSEGEMDQLLAQARRFHEEEIVRAFRALTELEQNLRYASEPRFSLEVGLLRL 360
Query: 800 GSM 802
+
Sbjct: 361 AHL 363
>gi|332299032|ref|YP_004440954.1| DNA polymerase III subunits gamma and tau [Treponema brennaborense
DSM 12168]
gi|332182135|gb|AEE17823.1| DNA polymerase III, subunits gamma and tau [Treponema brennaborense
DSM 12168]
Length = 672
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/308 (36%), Positives = 173/308 (56%), Gaps = 3/308 (0%)
Query: 466 KPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQT 525
+P FD+L+GQ V +L N I G+IA YLF GPRG GKTS+A+I + ALNC
Sbjct: 11 RPQRFDDLVGQEFVAATLKNAIQSGKIAHAYLFAGPRGCGKTSSARILAKALNCEKGPAA 70
Query: 526 KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDEC 585
PCG C C + G S + +E+DG + ++ VR I + P S R+K+++IDE
Sbjct: 71 VPCGECAACREITRGSSLDVIEIDGASNTSVNDVRQIKDEVL--FPPNSCRYKIYIIDEV 128
Query: 586 HLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLR 645
H+L + + A LK +EEPP V+FIF TT++ VP +I+SRCQ++ F + I L
Sbjct: 129 HMLSTSAFNALLKTIEEPPPYVIFIFATTELHKVPATIKSRCQQFHFRLVAVEQIKELLA 188
Query: 646 KISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGVVSEEK 704
+ +AE + + +AL IA + GS+RDA T+ DQ+S IT + E +G+V ++
Sbjct: 189 QAAAEIQVQADDEALYWIARESTGSIRDAYTLFDQVSSFSDGHITFDKIREKLGLVGVDR 248
Query: 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE 764
L L E+ +++D + ++R E++ SGV +S +A + ++ I +L
Sbjct: 249 LNGLCEICVAADASAAIERLDEILQSGVSIEQFISNVADYVRSLLLIKTGITKEALLGQS 308
Query: 765 LERLKHAL 772
ER A+
Sbjct: 309 AERYSQAV 316
>gi|312135789|ref|YP_004003127.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
owensensis OL]
gi|311775840|gb|ADQ05327.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
owensensis OL]
Length = 534
Score = 205 bits (521), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 121/364 (33%), Positives = 200/364 (54%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q+ + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + R KV
Sbjct: 64 LNLKDGNPCNECDVCKSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSVCRKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LIA A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQIENISIDDNALYLIAQKAEGALRDALTILERCMNTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ + A +G +
Sbjct: 242 VTSTEIVKEFIAAIVENDSNKGLKVINRLWDEGMDVNTFLEETIKLLRN--ALILRLGAK 299
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +E RL ++K+L + Q+R T F LL++ ++
Sbjct: 300 DVLVDMVEDDKSFVMNISNLVDSNRLVSSIKMLIDTANQIRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|339018128|ref|ZP_08644270.1| DNA polymerase III gamma/tau subunit [Acetobacter tropicalis NBRC
101654]
gi|338752793|dbj|GAA07574.1| DNA polymerase III gamma/tau subunit [Acetobacter tropicalis NBRC
101654]
Length = 722
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 173/302 (57%), Gaps = 14/302 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 47 RVLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 106
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C ++ + + +E+D ++ G+D VR I++ +
Sbjct: 107 CIGPDGKGGPTPDPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREIIE--ATRFRPM 164
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ++
Sbjct: 165 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVLSRCQRFDLR 224
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-------K 686
++ D+ A +I+ +E + + P+AL LIA ADGS+RD ++LDQ G +
Sbjct: 225 RVPQADLAALFARIAEKEQVRLSPEALSLIARAADGSVRDGLSLLDQAIAQGTGPDGASE 284
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
I ++LV++++G+ + + +LLE + + + A G DP +++ + L+
Sbjct: 285 EIGAALVSDMLGLADRQVVFDLLEATFTGKPDKALALADAAHARGADPGLMLGDMLELVH 344
Query: 747 DI 748
I
Sbjct: 345 TI 346
>gi|254474501|ref|ZP_05087887.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
gi|214028744|gb|EEB69579.1| DNA polymerase III, tau subunit [Ruegeria sp. R11]
Length = 607
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 18 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 77
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 78 GEDGQGGPTTDPCGKCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVQYRAASA 135
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 136 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 195
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ LR+I+ E ++ DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 196 EPEVMIDLLRRIATAEGADIAEDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 255
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 256 AMLGLADRGRVLDLMDMILRGDAAAALTELSAQYAEGADPLAVLRDLAEI 305
>gi|46581600|ref|YP_012408.1| DNA polymerase III subunits gamma/tau [Desulfovibrio vulgaris str.
Hildenborough]
gi|387154799|ref|YP_005703735.1| DNA polymerase III subunits gamma and tau [Desulfovibrio vulgaris
RCH1]
gi|46451023|gb|AAS97668.1| DNA polymerase III, gamma and tau subunits, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311235243|gb|ADP88097.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris
RCH1]
Length = 616
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 7/310 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ +Y+P F E+ GQ V L R+AP YLF G RG GKT+ A+IF+ ALNC
Sbjct: 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C G + +E+DG + +G+D + + + + G R+KV
Sbjct: 65 TTAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAI--GYAPMEGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP RV F+ TT+ P +I SRCQ + F ++ +
Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAG 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+ A L K+ E ++ +P A+ LIA A GS+RD+ ++L Q+ LG+ R+T ++G
Sbjct: 183 LEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTYT 754
+ +E L L+E + D REL+D GVD + +L + L M AG
Sbjct: 243 LAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAA 302
Query: 755 IGGRSLTEAE 764
+ L E E
Sbjct: 303 LASLDLPEDE 312
>gi|218132674|ref|ZP_03461478.1| hypothetical protein BACPEC_00534 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992400|gb|EEC58403.1| DNA polymerase III, subunit gamma and tau [[Bacteroides]
pectinophilus ATCC 43243]
Length = 540
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/276 (40%), Positives = 163/276 (59%), Gaps = 4/276 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FD++ GQ+ +V +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKWRPADFDDVKGQDAIVTTLRNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C C +G S N +E+D + G++ +R I + + P+ R+KV
Sbjct: 65 EHPVDGRPCGECAMCKSIAAGSSMNVIEIDAASNNGVEDIRKIREEVQYS-PTEG-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTETHKIPITILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I ARL ++ EN+NVE AL IA ADGSLRDA ++LDQ LG+ + V E++
Sbjct: 183 ITARLEELMKAENINVEDKALRYIAKAADGSLRDALSLLDQCLAFYLGQDLKYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
G V E LL + +++DT ++ +L+ G D
Sbjct: 243 GAVDTEVFSRLLRMVLAADTTGCIRLLEDLIMQGRD 278
>gi|429737415|ref|ZP_19271279.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
gi|429152721|gb|EKX95534.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 138 str. F0429]
Length = 612
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/344 (33%), Positives = 195/344 (56%), Gaps = 19/344 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPETFADLVGQEHISRTLARAVTSGQTSHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R + + S +K+
Sbjct: 65 AEGPTLTPCGACDSCRAISDGSSMDVFEIDAASNRGIDEIRDLRE--SVKFAPTEGHYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP RV+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPRVIFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL ++ E + + DAL +IA+ ADG +RDA ++LDQ + L + +T+ V E +G
Sbjct: 183 IRDRLIRVCHESGIAADEDALAIIAVQADGGMRDALSILDQCTALAEGTLTAERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAET-VKRARELMDSGVDPMVLMSQLASLI--MDIIAGTYTI 755
+V +E + L +S TA + + EL+ +G + ++++LA + I+ T+
Sbjct: 243 LVG-RAWIEKMALQISGRTAAPLITQLGELLHNGRELRQILAELAQYFRSLMIVGVGGTL 301
Query: 756 GGRSLTEAEL------------ERLKHALKLLSEAEKQLRLSSE 787
G L + + + + L+ L+EA +++R+S +
Sbjct: 302 GSAELPDGQAEALREAAARFTQDEIMAILRKLNEAMQEIRVSPQ 345
>gi|392381374|ref|YP_005030571.1| DNA polymerase III (gamma and tau subunits) [Azospirillum
brasilense Sp245]
gi|356876339|emb|CCC97104.1| DNA polymerase III (gamma and tau subunits) [Azospirillum
brasilense Sp245]
Length = 618
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 173/296 (58%), Gaps = 8/296 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +V++L N I GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 23 RVLARKYRPKSFAELIGQDALVRTLTNAIHSGRIAQAFMLTGVRGVGKTTTARIIARALN 82
Query: 519 CVATDQT-----KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C D T PCG C C + + ME+D + G+D +R I+ + SA
Sbjct: 83 CTGPDGTGGPTVTPCGVCDNCRAIAEDRHVDVMEMDAASHTGVDDIREIIDGVRYAPVSA 142
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K+++IDE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 143 --RYKLYIIDEVHMLSKSAFNALLKTLEEPPAHVKFVFATTEIRKVPVTVLSRCQRFDLR 200
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++ + +I+ E +EPDA LIA ADGS+RD ++LDQ ++L +T+
Sbjct: 201 RVDAQVLKEHFTRITGLEGAGIEPDAAALIARAADGSVRDGLSLLDQAIALAAGTVTAQQ 260
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
V +++G+ K+++L E A+S+ AE + +L G DP+V++ L L+ ++
Sbjct: 261 VRDMLGLADRSKVIDLFEAAVSAKPAEAMDLLSDLHRVGADPVVILQDLLDLVHNL 316
>gi|417646348|ref|ZP_12296208.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU144]
gi|329727982|gb|EGG64429.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU144]
Length = 568
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +++D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIDIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYKMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|386348003|ref|YP_006046252.1| DNA polymerase III subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
gi|339412970|gb|AEJ62535.1| DNA polymerase III, subunits gamma and tau [Spirochaeta thermophila
DSM 6578]
Length = 510
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 161/272 (59%), Gaps = 3/272 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
+ + +P F +L GQ VV +L N + GR+A YLF GPRG GKTS A+I + ALNC
Sbjct: 7 ANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQ 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+PCG C C + G + + +E+DG + ++ VR I + + R+KV++
Sbjct: 67 GVTPEPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVL--FAPGKARYKVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + + A LK +EEPP VVFIF TT++ VP +I+SRCQ+Y F I I
Sbjct: 125 IDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIA 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
+ LR+ ++E + VE +AL IA ADGSLRDA T+ DQ +S R++ +L+ E +G+V
Sbjct: 185 SLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLV 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGV 732
E+L ++E + + + E++ SGV
Sbjct: 245 GFERLQAVVEACVREEVKGALDLVHEILMSGV 276
>gi|120601240|ref|YP_965640.1| subunits gamma and tau [Desulfovibrio vulgaris DP4]
gi|120561469|gb|ABM27213.1| DNA polymerase III, tau subunit [Desulfovibrio vulgaris DP4]
Length = 622
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/310 (35%), Positives = 166/310 (53%), Gaps = 7/310 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ +Y+P F E+ GQ V L R+AP YLF G RG GKT+ A+IF+ ALNC
Sbjct: 5 SLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C G + +E+DG + +G+D + + + + G R+KV
Sbjct: 65 ATAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAI--GYAPMEGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP RV F+ TT+ P +I SRCQ + F ++ +
Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAG 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+ A L K+ E ++ +P A+ LIA A GS+RD+ ++L Q+ LG+ R+T ++G
Sbjct: 183 LEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTYT 754
+ +E L L+E + D REL+D GVD + +L + L M AG
Sbjct: 243 LAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAA 302
Query: 755 IGGRSLTEAE 764
+ L E E
Sbjct: 303 LASLDLPEDE 312
>gi|374293006|ref|YP_005040041.1| DNA polymerase III subunits gamma and tau [Azospirillum lipoferum
4B]
gi|357424945|emb|CBS87825.1| DNA polymerase III (gamma and tau subunits) [Azospirillum lipoferum
4B]
Length = 623
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 175/296 (59%), Gaps = 8/296 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FDELIGQ+ +V++L N I GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 25 RVLARKYRPKTFDELIGQDALVRTLTNAIQSGRIAQAFMLTGVRGVGKTTTARIIARALN 84
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C D PCG C C + + ME+D + G+D +R I+ + SA
Sbjct: 85 CTGPDGKGGPTVSPCGVCDNCRAIAEDRHVDVMEMDAASHTGVDDIREIIDGVRYSPVSA 144
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K+++IDE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 145 --RYKLYIIDEVHMLSKSAFNALLKTLEEPPSHVKFVFATTEIRKVPVTVLSRCQRFDLR 202
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++ + +++A+E ++E DA LIA ADGS+RD ++LDQ ++L +T+
Sbjct: 203 RVDAQVLKEHFTRVTAQEGADIEGDAAALIARAADGSVRDGLSLLDQAIALAAGTVTAQQ 262
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
V +++G+ ++++L E A+S+ AE + +L G DP+V++ L L+ ++
Sbjct: 263 VRDMLGLADRTRVIDLFEAAVSARPAEAMDILADLHRVGADPVVILQDLLDLVHNL 318
>gi|167761782|ref|ZP_02433909.1| hypothetical protein BACSTE_00122 [Bacteroides stercoris ATCC
43183]
gi|167700288|gb|EDS16867.1| DNA polymerase III, subunit gamma and tau [Bacteroides stercoris
ATCC 43183]
Length = 607
Score = 204 bits (520), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 123/393 (31%), Positives = 212/393 (53%), Gaps = 19/393 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E +L + + + + + +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDHFLENKVGDALLLLNDVLSKGFDGSHFITGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R T+A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLPLLEVGASIRQRYQTQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSR 830
+ + + D +G S +Q + P++T +
Sbjct: 359 VAQITAEGDDIANGHSPKQVMKPIFTQPAATQQ 391
>gi|299144510|ref|ZP_07037589.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517598|gb|EFI41338.1| DNA polymerase III, gamma and tau subunits [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 548
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 114/358 (31%), Positives = 205/358 (57%), Gaps = 16/358 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ FDEL+GQN + +L N I+ I+ YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSKTFDELVGQNHITTALKNQIANNEISHAYLFSGTRGTGKTSAAKIFARAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ ++ PC +C C + + + +E+D + +D +R + + + P + ++K
Sbjct: 63 CLCSENGNPCNHCENCLSILDDRVMDVIEMDAASNNSVDDIRELKEKVVY--PPQNLKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ ++FI TT+ + +P++I SR Q++ F +I
Sbjct: 121 VYIIDEVHMLSKSAFNALLKVLEEPPKHLIFILATTEPEKIPQTILSRTQRFNFKRINPE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
I+ L+ I+A EN + + D LI+ N+DG++RDA ++LDQ LS K I+ +L E++
Sbjct: 181 IIIENLKNITALENKSCDEDVFSLISNNSDGAMRDALSLLDQCLSFTDKHISYNLATEIL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS-----LIMDIIAGT 752
G+ S++ L ++ + + + +E+ G D +L+S L S +I+ I T
Sbjct: 241 GITSDDILFKISRALIDRNLENAISSLQEIYSKGKDISILISDLISHFRNLMIVKTIKNT 300
Query: 753 ----YTIG-GRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
YT + EA ++R+ LK+L+E ++ ++++ F +++++ +
Sbjct: 301 SELLYTTRLDDYIKEACMLSVDRIIDILKILNETLLNVKYANDKRIIFEMSIIKITML 358
>gi|149203327|ref|ZP_01880297.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
gi|149143160|gb|EDM31199.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. TM1035]
Length = 588
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 72 GPDGQGGPTTEPCGQCEHCRAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVNYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 190 EPEVMIALLRRIADREGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + D A + G DP+ ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDLAEI 299
>gi|397690783|ref|YP_006528037.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
gi|395812275|gb|AFN75024.1| DNA polymerase III subunit tau [Melioribacter roseus P3M]
Length = 527
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 184/319 (57%), Gaps = 3/319 (0%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+ N ++K++P F+E++GQ + +L N I RIA YLF GPRG GKT+TA+I +
Sbjct: 1 MSNFLVTARKWRPQKFEEVVGQEHITTTLKNAIKNNRIAHAYLFAGPRGVGKTTTARILA 60
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
LNC+ +PC C C F + +S + +E+DG + + ++ +R + + S A
Sbjct: 61 KVLNCLNPLDGEPCNECEMCKSFHNSQSLDVIEIDGASNRRIEEIRSLRE--SVKYAPAK 118
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++KV++IDE H+L +++ A LK LEEPP+ +FIF TTD+ VP +I SRCQ++ F +
Sbjct: 119 GKYKVYIIDEVHMLTPESFNALLKTLEEPPEHTLFIFATTDVHKVPLTIVSRCQRFDFRR 178
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ I L KI+ E + ++ AL LIA ADG+LRDAE++ DQ +S GK++ S +
Sbjct: 179 IELNTIKDLLSKIAEAEGIQIDDTALSLIAKKADGALRDAESLFDQIISYSGKKVNSEEI 238
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
++++ ++ ++ + + +S D + R + D+G + + +++L +I
Sbjct: 239 SQMLNLIDQDIYFRISDAILSKDYNAAFEVTRTIYDNGWNFIDFLNELNEHFRNIFTVVL 298
Query: 754 TIGGRSLTEAELERLKHAL 772
+ AEL + K+ L
Sbjct: 299 RKSTDLVEAAELYKEKYLL 317
>gi|258649122|ref|ZP_05736591.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
51259]
gi|260850774|gb|EEX70643.1| DNA polymerase III, gamma and tau subunit [Prevotella tannerae ATCC
51259]
Length = 594
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 217/407 (53%), Gaps = 19/407 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P FD+++GQ+ + +L N I+ G++A YLF GPRG GKT+ A+IF+ +NC+
Sbjct: 8 ARKYRPTNFDDVVGQHALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 522 TDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ CG C C F +G+S N E+D + + +R +++ ++ LP R+KVF
Sbjct: 68 PGPGGEACGECESCQAFQAGRSLNVHELDAASNNSAEDIRALIEQVNI-LPQMG-RYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN+++ DI
Sbjct: 126 IIDEVHMLSTAAANAFLKTLEEPPAHAIFILATTEKQKLLPTILSRCQIYDFNRMEVNDI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
V L++++ ++++ E AL++IA ADG +RDA ++ DQ++ + +T + V E + +
Sbjct: 186 VHHLKRVAEDQHIQYEEAALNVIAQKADGGMRDALSIFDQVAGFAEGNLTYAKVIEDLDL 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + + +L ++ E + E+++ G +S LA+ D++ I
Sbjct: 246 LDYDYYFRVTDLLLAGKVPEVLLTLNEILNKGFAANHFISGLAAHFRDLLVSRDAITLPL 305
Query: 760 LTEAE--------------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L AE L L AL+L S+ E Q + S + TL++L + +
Sbjct: 306 LEVAEDVRQRYGEQAGRCSLPFLYKALRLTSDCELQYKDSGNKRLRVELTLIELAQLANA 365
Query: 806 DLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPA 852
+ +G + + + + P + SR +S PQ P +A +PA
Sbjct: 366 AVPTAGQGAKTNLQPVFQKPEA-SRRTTPQATVSQPQPAPSSATAPA 411
>gi|407786830|ref|ZP_11133974.1| DNA polymerase III subunits gamma and tau [Celeribacter
baekdonensis B30]
gi|407200781|gb|EKE70786.1| DNA polymerase III subunits gamma and tau [Celeribacter
baekdonensis B30]
Length = 597
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/292 (36%), Positives = 171/292 (58%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +N
Sbjct: 9 KVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T+PCG C C G+ + ME+D ++ G+ +R I+ S +A
Sbjct: 69 CIGLDGNGGPTTEPCGQCEHCIAITEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAA 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I+ ++A LRKI+ EN + +AL LI A+GS RDA ++LDQ LS T
Sbjct: 187 RIEPEVMIALLRKIAGGENGQITDEALALITRAAEGSARDATSLLDQALSHGAGETTVEQ 246
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++L+L ++ M+ D A + G DP+ ++ LA +
Sbjct: 247 VRAMLGLADRGRVLDLFDMIMAGDAAGALGEIGGQYADGADPLAVLRDLAEI 298
>gi|164686926|ref|ZP_02210954.1| hypothetical protein CLOBAR_00526 [Clostridium bartlettii DSM
16795]
gi|164604029|gb|EDQ97494.1| DNA polymerase III, subunit gamma and tau [Clostridium bartlettii
DSM 16795]
Length = 551
Score = 204 bits (519), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 118/358 (32%), Positives = 204/358 (56%), Gaps = 18/358 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F ++IGQ +V++L N I + YLF G RGTGKTSTAKIFS A+N
Sbjct: 6 KALYRVYRPKNFSDVIGQEHIVRTLKNQIENNNVGHAYLFCGTRGTGKTSTAKIFSRAVN 65
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C + + K+ + +E+D + +D +R + +++ A ++K
Sbjct: 66 CTNLHNDEPCNECENCREILEDKTMDVVEIDAASNNSVDDIRELRENVKYS--PAKAKYK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F ++
Sbjct: 124 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRFDFKRVTVK 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI +R+R I +E + + AL+LIA N+ G+LRDA ++LDQ +S G +I+ + V EL+
Sbjct: 184 DISSRMRYICEKEGIEADEKALNLIARNSQGALRDALSILDQCISFEGNKISYNDVIELL 243
Query: 698 GVVSEEKLLELLELAMSSDTAETV----------KRARELMDSGVDPM--VLMSQLASLI 745
G V+ E+L +L E + DT +++ K R L++ +D +++ ++++ +
Sbjct: 244 GSVNIEQLFDLAESIIKEDTRKSLQILNDFIIWGKDVRNLVNDLIDHFRNLMVCKISNDL 303
Query: 746 MDIIA---GTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+II+ T + + + L L +LSEA+ +++SS T++++
Sbjct: 304 DEIISLPEETIDLLKQQAETIDTNNLIRILNILSEAQDGMKISSNPRVLMEVTMMKIA 361
>gi|371910559|dbj|BAL44374.1| DNA polymerase III subunits gamma and tau [uncultured bacterium]
gi|374853670|dbj|BAL56572.1| DNA polymerase III subunit gamma/tau [uncultured Chloroflexi
bacterium]
Length = 523
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 140/410 (34%), Positives = 215/410 (52%), Gaps = 33/410 (8%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P + E++GQ VVQ+L N + GRIA YLF GPRGTGKT+ A++ + A+N
Sbjct: 3 QALYRTYRPQGWQEVVGQEHVVQTLRNALQAGRIAHAYLFAGPRGTGKTTLARLLAKAVN 62
Query: 519 CVATDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C+ D +PC C C G+ + +E+D + ++ VR + ++ PS ++
Sbjct: 63 CLDPDPAARPCDRCENCLAVREGRFLDLIEIDAASNTSVEDVRDLRDKVNFA-PSQG-KY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP V+F+ TT+I +P ++ SRCQ++ F ++
Sbjct: 121 KVYIIDEVHMLSTAAFNALLKTLEEPPSHVIFVLATTEIHKIPATVLSRCQRHEFRRLSV 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+IV +L +I+ +E L E +AL LIA A GSLRDA ++LDQ++ G IT +LV L+
Sbjct: 181 AEIVGQLERIAEKEALQAEAEALTLIARQASGSLRDAISLLDQVASAGLPITLALVQTLL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G + + EL+E D + + +D G D Q I+D + I
Sbjct: 241 GTAAPTSVPELIESLHGGDASRALGIIHRALDGGADARAFARQ----IVDHLRSLLLIQF 296
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL-GSMHSPDLTQSGSSRRQ 816
+ TE + E + Q+R + T TATLL L + HS + +
Sbjct: 297 GNETE---------IDATPEMKAQMRKQARYFT--TATLLSLIKAFHSAAVDTRNAWL-- 343
Query: 817 SSRTTEEDPSSTSREAV--VYKRMSG-PQYMPQNAVSPAS-LREPVNGNS 862
PS AV +SG PQ P+ A SPAS R+PV +S
Sbjct: 344 --------PSLGLELAVAEALNAISGEPQQSPKTAHSPASAARQPVPPDS 385
>gi|189464151|ref|ZP_03012936.1| hypothetical protein BACINT_00487 [Bacteroides intestinalis DSM
17393]
gi|189437941|gb|EDV06926.1| DNA polymerase III, subunit gamma and tau [Bacteroides intestinalis
DSM 17393]
Length = 616
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 201/364 (55%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G I+
Sbjct: 179 RINVDDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + +++ ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLANQISDALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R T+A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLSLLEVGASIRERYQTQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 IAQL 362
>gi|209965591|ref|YP_002298506.1| DNA polymerase III subunits gamma and tau [Rhodospirillum centenum
SW]
gi|209959057|gb|ACI99693.1| DNA polymerase III, subunits gamma and tau, putative
[Rhodospirillum centenum SW]
Length = 640
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 175/289 (60%), Gaps = 8/289 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FDEL+GQ+ +V++L N I GRI Y+ G RG GKT+TA+I + ALN
Sbjct: 24 RVLARKYRPQSFDELVGQDALVRTLRNAIQSGRIHQAYMLTGVRGVGKTTTARIIARALN 83
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C +C + ++ + +E+D + G+D +R I+ + P+A
Sbjct: 84 CVGPDGKGGPTITPCGVCEQCRSIAADRNVDVLEMDAASNTGVDNIREIIDGVRYA-PAA 142
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ R+K+++IDE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 143 A-RYKLYIIDEVHMLSKGAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLSRCQRFDLR 201
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
++ G +V +I+ +E + + +A+ LIA ADGS+RD ++LDQ LG R+T+
Sbjct: 202 RVDQGTLVGHFTRIAGKEGVEADAEAISLIARAADGSVRDGLSLLDQAIALGSGRVTAEQ 261
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
V +++G+ +++L E AM++ A+ + L G DP+V++ L
Sbjct: 262 VRDMLGLADRGLIVDLFEAAMAARPADALGVLDGLHRRGADPVVIVQDL 310
>gi|333977531|ref|YP_004515476.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
kuznetsovii DSM 6115]
gi|333821012|gb|AEG13675.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 583
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 102/248 (41%), Positives = 157/248 (63%), Gaps = 3/248 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F E++GQ V +L N + GR+A YLF GPRGTGKT+TAK+ + ALN
Sbjct: 4 QALYRKWRPSRFKEIVGQEHVTLTLQNALLAGRVAHAYLFCGPRGTGKTTTAKVLAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+A ++PC C C + +G S + +E+D + +G+D +R + + + A ++
Sbjct: 64 CLARQGSEPCNECAVCREINAGTSMDVVEIDAASHRGIDEIRELREKVR--FSPALAGYR 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L S+ + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F+ I G
Sbjct: 122 VYIIDEVHMLTSEAFNALLKTLEEPPAHVVFVLATTEPHKVPLTILSRCQRFDFHPIGLG 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELV 697
D++ARLR+++ VE +AL LIA ADG LRDA +LDQ + G +T V+ ++
Sbjct: 182 DMLARLREVATGSGFQVEEEALYLIARAADGGLRDALGILDQAAAYGNMVVTVDHVHRIM 241
Query: 698 GVVSEEKL 705
G V ++ L
Sbjct: 242 GTVRDDLL 249
>gi|85703838|ref|ZP_01034941.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
gi|85671158|gb|EAQ26016.1| DNA polymerase III subunits gamma and tau [Roseovarius sp. 217]
Length = 587
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFQADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 72 GPDGMGTPTTEPCGVCEHCRAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVNYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSVNAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LR+I+ +E+ + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 190 EPEVMIALLRRIADKESAQISDDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + D A + G DP+ ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDMILRGDAAGALSELSAQYAEGADPLAVLRDLAEI 299
>gi|443319415|ref|ZP_21048647.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 6406]
gi|442780934|gb|ELR91042.1| DNA polymerase III, subunit gamma/tau [Leptolyngbya sp. PCC 6406]
Length = 454
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 193/358 (53%), Gaps = 19/358 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L KY+P +L+GQN++ L +++ +IAP YLF GPRGTGKTSTA+I + +LN
Sbjct: 3 QPLHLKYRPQRLVDLVGQNLIRDCLTVALNQNQIAPAYLFYGPRGTGKTSTARILAKSLN 62
Query: 519 CVATD--QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+ + PCG C C +G + + +E+D + G++ R +++ S+ L A R
Sbjct: 63 CLKREGPTATPCGECGTCRSIANGSALDVIEIDAASHGGVEDARELVQ--SSQLSPAQSR 120
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV ++DECH+L ++ A LK +EEPP RVVFI TT+ V +I SRC + F +
Sbjct: 121 YKVVILDECHMLTTQAQNALLKVIEEPPLRVVFILATTEPHKVLPTISSRCLTFEFRPLS 180
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695
+ A L +I+ E + + D ++ +A G LRDA +L +++LL + V
Sbjct: 181 AKALKAYLGRIAQAEGIAITGDGIEAMAKLCQGGLRDALQLLAKVALLDSDEVDGPQVYA 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V ++L +LE +S E ++RAR L+++G PM L L ++ D++ T
Sbjct: 241 MTGQVGGHQVLPVLESVLSRAVLELLQRARTLIETGHTPMELHLALLAVYHDLMVVKQTP 300
Query: 756 GGRSLTEAE--------------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
SL LE++ +L++L E+E+QLR S W L++L
Sbjct: 301 KAESLLSGPLSPSQLEPLAGSLSLEQIYQSLEVLGESERQLRFSPNPQPWLEVVLMKL 358
>gi|167759644|ref|ZP_02431771.1| hypothetical protein CLOSCI_02002 [Clostridium scindens ATCC 35704]
gi|167662770|gb|EDS06900.1| DNA polymerase III, subunit gamma and tau [Clostridium scindens
ATCC 35704]
Length = 523
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 138/408 (33%), Positives = 216/408 (52%), Gaps = 35/408 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + + A P+ R+KV
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I RLR++ +E VE A+ IA ADGS+RD+ ++LDQ +G+++T V E++
Sbjct: 183 ISDRLRELVDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYIGEKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL +S D + + EL+ G + +SQLAS L++
Sbjct: 243 GAVDTETFSRLLRELLSMDVHKVIVTVEELVMQGRE----LSQLASDFTWYLRNLLLVKS 298
Query: 747 -DIIAGTYTIGGRSLT----EAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D + + +LT EA++ + L +++ S+ QL+ ++++ TL++
Sbjct: 299 SDNMEDVLDVSTENLTQLKEEAQMIDNDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIK 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDPS-----STSREAVVYKRMSGP 841
L P + Q+ + R E+ S RE VVY GP
Sbjct: 359 LC---RPAMDQNQDALLDRIRLIEKQLEEGLLDSAVREKVVYVNSDGP 403
>gi|84516011|ref|ZP_01003372.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
gi|84510453|gb|EAQ06909.1| DNA polymerase III subunits gamma and tau [Loktanella vestfoldensis
SKA53]
Length = 572
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 10 LARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFMMTGIRGTGKTTTARIIAKGMNCI 69
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 70 GPDGTGGPTTDPCGTCEHCVAIMEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 127
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 128 RYKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLSRCQRFDLRRI 187
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VN 694
+ +A LRKI+ E + DAL LI A+GS RDA+++LDQ G TS+ V
Sbjct: 188 EPETQIALLRKIATAEGAQISDDALALITRAAEGSARDAQSLLDQAISHGAGETSAAQVR 247
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + A+ + G DPM ++ LA +
Sbjct: 248 AMLGLADRGRVLDLFDMILRGRAADALTELSGQYADGADPMAVLRDLAEV 297
>gi|417657463|ref|ZP_12307124.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU028]
gi|418665548|ref|ZP_13226992.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU081]
gi|329734326|gb|EGG70640.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU028]
gi|374408435|gb|EHQ79257.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU081]
Length = 568
Score = 204 bits (519), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/348 (31%), Positives = 188/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNNDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISSD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
I+ RL+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +R+ +
Sbjct: 182 QIIDRLKYVANSQSLDYDDAALEFIAKASEGGMRDALSIMDQAIAFGDERLILQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L EL + SD R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNELFNDIVKSDVKAAFNRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL +L+ L + ++++ +R S + F L++L M
Sbjct: 302 VHFESLIHFDLDMLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|146276573|ref|YP_001166732.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
gi|145554814|gb|ABP69427.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17025]
Length = 582
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I + LNCV
Sbjct: 12 LARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCV 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + +E+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGDGGPTTEPCGACEACRSIAEGRHVDVLEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ ++A L K++ +E + DAL LI A+GS+RDA +++DQ G T+ V
Sbjct: 190 EPEVMIAHLAKVADKEGARLTADALALITRAAEGSVRDAMSLMDQAIAHGAGETTADEVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M D A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGDAAGALAELSGQYADGADPMAILRDLAEI 299
>gi|331092483|ref|ZP_08341306.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330400986|gb|EGG80586.1| hypothetical protein HMPREF9477_01949 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 516
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 110/274 (40%), Positives = 162/274 (59%), Gaps = 4/274 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FD++ GQ+ +V +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPSEFDDVKGQDHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
T+ PCG C C G S N +E+D + G+D +R I + + A P+ ++KV
Sbjct: 65 QHTEDGSPCGECEMCRSIALGASMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+F+ TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFVLATTEAHKIPITILSRCQRYDFKRISIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I RLR++ EEN+ VE A+ +A ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 IADRLRELMTEENVEVEEKAIRYVAKMADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
G V + LL + D +K EL+ G
Sbjct: 243 GAVDTDVFSRLLRQILKRDVPAVLKSVEELVMQG 276
>gi|296131618|ref|YP_003638865.1| DNA polymerase III subunits gamma and tau [Thermincola potens JR]
gi|296030196|gb|ADG80964.1| DNA polymerase III, subunits gamma and tau [Thermincola potens JR]
Length = 537
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/275 (35%), Positives = 167/275 (60%), Gaps = 3/275 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ + ++L N I RIA YLF GPRGTGKT+TAK+F+ ALNC
Sbjct: 5 ALYREWRPQIFQDIVGQQHITRTLQNAIKANRIAHAYLFCGPRGTGKTTTAKVFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C G S + +E+D + +G+D +R + + + R+++
Sbjct: 65 KEGPNAEPCNQCNNCIRITDGVSMDVLEIDAASNRGIDEIRDLREKVK--FSPTEGRYRI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ +P +I SRCQ++ F +I G+
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPHHVIFILATTEPHKIPTTILSRCQRFDFRRIGTGE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV RLR + + + + L L+A A+G LRDA ++LDQ ++ G+R+T VN ++G
Sbjct: 183 IVDRLRDVCESLQVQTDEETLTLLAKTAEGGLRDALSVLDQCIAFGGQRVTVEEVNTVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
V +E L ++++ ++ D+ + ++++ G D
Sbjct: 243 TVDQELLFKMVDYFINKDSTSALFLVDDIVNQGKD 277
>gi|307719903|ref|YP_003875435.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
gi|306533628|gb|ADN03162.1| hypothetical protein STHERM_c22350 [Spirochaeta thermophila DSM
6192]
Length = 510
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/272 (39%), Positives = 160/272 (58%), Gaps = 3/272 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
+ + +P F +L GQ VV +L N + GR+A YLF GPRG GKTS A+I + ALNC
Sbjct: 7 ANRRRPQTFKDLKGQEFVVSTLTNALKAGRVAHAYLFSGPRGVGKTSAARILAKALNCEQ 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+PCG C C + G + + +E+DG + ++ VR I + + R+KV++
Sbjct: 67 GVTPEPCGTCTSCKEISQGTAIDVIEIDGASNTSVNDVRVIREEVL--FAPGKARYKVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + + A LK +EEPP VVFIF TT++ VP +I+SRCQ+Y F I I
Sbjct: 125 IDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTELQRVPATIRSRCQQYHFRLISPEVIA 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
+ LR+ ++E + VE +AL IA ADGSLRDA T+ DQ +S R++ +L+ E +G+V
Sbjct: 185 SLLREAASEMQVEVEEEALSWIAKEADGSLRDAYTLFDQVVSFSEGRLSYALIQEKLGLV 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGV 732
E+L ++E + + E++ SGV
Sbjct: 245 GFERLQAVVEACAREEVKGALDLVHEILMSGV 276
>gi|150392457|ref|YP_001322506.1| DNA polymerase III subunits gamma and tau [Alkaliphilus
metalliredigens QYMF]
gi|149952319|gb|ABR50847.1| DNA polymerase III, subunits gamma and tau [Alkaliphilus
metalliredigens QYMF]
Length = 559
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 113/357 (31%), Positives = 198/357 (55%), Gaps = 18/357 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F+++IGQ+ V+++L N I +A YLF G RGTGKTSTAKIF+ A+N
Sbjct: 4 KALYRKWRPRIFEDVIGQDHVIKTLKNQIEANNVAHAYLFSGTRGTGKTSTAKIFARAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PC C C I+ + +E+D + G+D +R I +++ P + ++K
Sbjct: 64 CKDEQNVNPCNECEVCQGIITESIMDVIEIDAASNNGVDHIREIRENVK--YPPSKGKYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ++ F +K
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPQKLPATILSRCQRFDFKPVKTD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++ +L I ++N E +AL ++A+NA+G+LRDA ++L+Q +S ++T V +
Sbjct: 182 DMMKQLVYICKSMDINAEEEALRVVAMNAEGALRDALSILEQCISFHPGQLTYHDVTNTL 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+VS E L ++ E + ++ ++ ++++ G D VL+ L ++ +
Sbjct: 242 GMVSHEFLFDMAEAFTKQNASKAIELVQQVIMEGKDVQVLIKDLIGYYRGLLLANMNVEL 301
Query: 758 R---SLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQL 799
S ++ L R+K ++ +L+EAE + + S+ L+ L
Sbjct: 302 EDLLSFSQEILSRIKEQSKAFETNELIRSIHVLTEAESKAKYSTHPRILLEVALITL 358
>gi|304437633|ref|ZP_07397587.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369376|gb|EFM23047.1| exopolyphosphatase [Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 613
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/373 (34%), Positives = 203/373 (54%), Gaps = 27/373 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+I+ YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYRRWRPERFADLVGQEHISRTLSRAVTSGQISHAYLFTGPRGTGKTSTAKILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R + + S +K+
Sbjct: 65 AEGPTLTPCGICDSCRSISDGSSMDVFEIDAASNRGIDEIRDLRE--SVKFAPTEGHYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+RV+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPERVIFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL + E ++ E DAL +IA ADG +RDA ++LDQ ++L +T+ V E +G
Sbjct: 183 IRDRLIYVCKESDIAAEEDALGIIAEQADGGMRDALSILDQCMALAEGTLTAERVQETLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI-IAGTYTIGG 757
+V + + + D A + + EL+ SG + ++++LA + IAG +GG
Sbjct: 243 LVGRAWIRHMAGEIAARDAAALIAQLSELLQSGRELKQVLAELAQYFRRLMIAG---VGG 299
Query: 758 RSLTEAEL-----------------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
+++ AEL E + L+ L+E ++LR S + L +G
Sbjct: 300 -AVSAAELCAGDAEELRMDAAQFTQEEIMSILRRLNETMQELRTSPQ--PRIAVETLLIG 356
Query: 801 SMHSPDLTQSGSS 813
H+ SG S
Sbjct: 357 LCHTEGAAPSGES 369
>gi|220932911|ref|YP_002509819.1| DNA polymerase III subunits gamma and tau [Halothermothrix orenii H
168]
gi|219994221|gb|ACL70824.1| DNA polymerase III, subunits gamma and tau [Halothermothrix orenii
H 168]
Length = 588
Score = 204 bits (518), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 114/291 (39%), Positives = 178/291 (61%), Gaps = 10/291 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P F++L+GQ+ VV++L N + GRIA YLF GPRGTGKTSTAK+F+ ALNC
Sbjct: 5 SLYRKYRPQNFNDLVGQHHVVRTLKNALESGRIAHAYLFAGPRGTGKTSTAKVFAMALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ T+PCG C C G+S + +E+D + +G+D +R L+ P+ +KV
Sbjct: 65 IHGPTTEPCGQCENCRKIQKGQSIDVIEIDAASNRGIDEIRE-LREKVKFYPNEG-EYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP++VVFI TT+ V +I SRCQ++ F+ + +
Sbjct: 123 YIIDEVHMLTKGAFNALLKTLEEPPEKVVFILATTEPHQVINTILSRCQRFDFSLLPVRE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RLR I +E + E +AL+++A +A+G LRDA ++LDQ +S G + V ++G
Sbjct: 183 IQERLRYICEKEEVEFEEEALNILARSANGGLRDAISLLDQAISYTGNNLNPIDVQGMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
VS E L + ++ ++ ++ E +K ++ G + + LI D+I
Sbjct: 243 KVSREVLSQFIKYVLNGNSVEALKLVNRIISRG-------NNVGRLIGDLI 286
>gi|342218883|ref|ZP_08711486.1| DNA polymerase III, subunit gamma and tau [Megasphaera sp. UPII
135-E]
gi|341588830|gb|EGS32205.1| DNA polymerase III, subunit gamma and tau [Megasphaera sp. UPII
135-E]
Length = 661
Score = 204 bits (518), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 118/341 (34%), Positives = 192/341 (56%), Gaps = 17/341 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F +++GQ V + L I +IA YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPKSFSDVVGQKQVTEILQKAICLDKIAHAYLFSGPRGTGKTSMAKIFARAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C I G S + +E+D + + ++ +R L+ LP A R K+
Sbjct: 65 EHEQNGNPCNTCSICTQIIEGDSLDVVEIDAASNRSIEDIR-TLRETIKFLP-AEGRKKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+ + +P +I SRCQ+Y F++I D
Sbjct: 123 YIIDEVHMLTIEAFNALLKTLEEPPSHVIFILATTEPERIPITILSRCQRYEFHRISSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVG 698
I++RL I+ EEN+++ +A L+A+ A+G +RDA +MLDQ G + I ++V +++G
Sbjct: 183 IMSRLLYIAKEENISLTVEAARLLAVQAEGGMRDALSMLDQCVGNGTQYIDDNMVRQVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL-----ASLIMDIIAGTY 753
++ +E + L + E +K+ ++ G +P +++S A + M + A +
Sbjct: 243 LLGKEWIFSLSTAIFHNQGKEIIKQIDHIIHLGKEPYIILSSFIEHIRALMFMQVHATSD 302
Query: 754 TIGGRSLTEAEL---------ERLKHALKLLSEAEKQLRLS 785
+ + EL ERL + LK+L E Q++ S
Sbjct: 303 VMADYAEQMQELEKQAQSITSERLFYILKVLQETLLQVKTS 343
>gi|210623910|ref|ZP_03294119.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
gi|210153274|gb|EEA84280.1| hypothetical protein CLOHIR_02070 [Clostridium hiranonis DSM 13275]
Length = 560
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 115/357 (32%), Positives = 208/357 (58%), Gaps = 19/357 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++Y+P F +++GQ ++++L N I G IA Y+F G RGTGKT+ AKIF+ A+N
Sbjct: 3 KALYREYRPQKFSDVVGQEHIIRTLKNEIMSGNIAHAYMFSGTRGTGKTTAAKIFARAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C ++ + + E+D + +D VR I + S A+ ++K
Sbjct: 63 CLNPKDGEPCNECESCKSILNDSTVDIFEIDAASNNSVDDVREIRE--SVKYTPANSKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L A LK +EEPP+ VVFIF TT+ + + ++ SRCQ++ F +I
Sbjct: 121 VYIIDEAHMLSKGASNALLKTIEEPPEYVVFIFATTEPNKMIPTVLSRCQRFDFKRITVE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
++ R+R I ++E + VE DAL +IA N+ G+LRDA ++LD+ L G K + V E++
Sbjct: 181 EMKERMRYICSKEGVEVEEDALSVIARNSQGALRDALSILDRCILFGDKYLRYEDVVEIL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGTY 753
G+V+ +++ L + ++ + A +K+ + SG D +L S+L +L++ + AG
Sbjct: 241 GIVNIDEIFGLADDIITHNVAAALKKIDSFISSGKDIEILSSELLEHMRNLMICLAAGDS 300
Query: 754 TIGGRSLTEAELERLKHALK------------LLSEAEKQLRLSSERCTWFTATLLQ 798
S+++ E +R+K +++ +LSE + L+ ++++ T F +++
Sbjct: 301 AKEIISVSDDEFDRMKKSIENTDIDNVIRIINILSEIQNNLKYATDKRTIFEVGIIK 357
>gi|206890696|ref|YP_002248894.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
yellowstonii DSM 11347]
gi|206742634|gb|ACI21691.1| DNA polymerase III subunit gamma/tau [Thermodesulfovibrio
yellowstonii DSM 11347]
Length = 512
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 200/355 (56%), Gaps = 16/355 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L GQ++V++ L N++ G+I+ Y+F GP+G GKTSTA+I + ALNC+
Sbjct: 6 LARKYRPQKFSDLTGQDVVIKILQNSLQTGKISHAYVFSGPKGVGKTSTARILAKALNCI 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ Q KPC C C G++ + +E+D + ++ +R + +++ SA +KV+
Sbjct: 66 DS-QNKPCDKCPSCVAIKEGRAMSVIEIDAASHTSVENIRDLRENIRYA--SAEGFYKVY 122
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + AFLK LEEPP VVF+ TT+ +P ++ SRCQ F +I I
Sbjct: 123 IIDEAHMLSQSAFNAFLKTLEEPPPHVVFVLATTEPRKIPLTVLSRCQHLQFKRIPINLI 182
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
RL+ I +EN+N +AL IA N++GS+RDA TMLDQ++ + +T VN L+G
Sbjct: 183 KQRLQFICNQENINATEEALYTIASNSEGSMRDALTMLDQVTSFTENVTQDNVNLLIGGT 242
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR-S 759
L EL E + + + + + EL + G D L+ L + I + + T +
Sbjct: 243 DVNVLYELTECLIDGNREKIILKVEELNNFGTDFKRLVGDLINFIRNTLISKITKSFKLY 302
Query: 760 LTEAE---LERL------KHALKLLSE---AEKQLRLSSERCTWFTATLLQLGSM 802
++E+E +E+L +H + LL E +E +R S F TLL+L +
Sbjct: 303 ISESEASLIEKLNKKTSEEHLVVLLKELINSEFAIRSSFFPRVIFEITLLKLSFL 357
>gi|317477107|ref|ZP_07936348.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
gi|316906650|gb|EFV28363.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
Length = 606
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 126/402 (31%), Positives = 216/402 (53%), Gaps = 21/402 (5%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ+ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQHALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTAEGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVAHLAYVASKEGITAEPEALNIIALKADGGMRDALSIFDQVVSFTGGNITYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + + + + + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLENKVCDALLLLNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDLNYRTSKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRT--TEEDPSSTSREAVVYKR 837
+ + + D SG S +Q+ + T+ P+ S+ A V R
Sbjct: 359 VAQITAEGDDAASGHSPKQAIKPIFTQPAPAQQSQAAPVAPR 400
>gi|344924113|ref|ZP_08777574.1| DNA polymerase III subunits gamma and tau [Candidatus Odyssella
thessalonicensis L13]
Length = 547
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 169/296 (57%), Gaps = 8/296 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N R L++KY+P E++GQ ++V++L I R+ ++ G RG GKT+TA+I +
Sbjct: 6 QNYRVLARKYRPQTMGEMVGQELLVKTLTQAIETNRLPHAFVLHGIRGVGKTTTARILAK 65
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNC D PCG C C + + +E+D ++ G+D +R + + SA
Sbjct: 66 ALNCQGPDGQGGPTANPCGVCTSCVSVTEDRHLDVIEMDAASRTGVDDIREVTE--SARY 123
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+ + R+K+F+IDE H+L + A LK LEEPP V FIF TT++ +P ++ SRC K+
Sbjct: 124 KAVNGRYKIFIIDEVHMLSKSAFNALLKTLEEPPPHVKFIFATTELKKIPETVLSRCMKF 183
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRIT 689
+I + ++I ++E +E +AL L+ ADGS RD ++LDQ +SL ++T
Sbjct: 184 DLARINPQVLCDYFKQICSKEQATIEDEALALLVRAADGSARDGLSLLDQAISLSQGQVT 243
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+++V +++GVV ++ LL L M AE + R+L G +P VL+ L LI
Sbjct: 244 TAIVRDMLGVVDRGRMFTLLNLLMEGKIAEVITEVRDLYARGSEPTVLLHDLLDLI 299
>gi|126733475|ref|ZP_01749222.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
gi|126716341|gb|EBA13205.1| DNA polymerase III, subunits gamma and tau [Roseobacter sp. CCS2]
Length = 612
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +++GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 41 LARKYRPETFADMVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 100
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 101 GPDGTGGPTTEPCGQCEHCVAIMEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 158
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
RFK+++IDE H+L + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 159 RFKIYIIDEVHMLSKNAFNALLKTLEEPPEHVKFIFATTEIRQVPVTVLSRCQRFDLRRI 218
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ +A LRKI+ E + +AL LI A+GS RDA+++LDQ +S T+ V
Sbjct: 219 EPETQIALLRKIATAEGAEITDEALALITRAAEGSARDAQSLLDQAISHGAGETTADQVR 278
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L ++ + + A + G DPM ++ LA +
Sbjct: 279 AMLGLADRGRVLDLFDMILRGEAAAALTELSGQYADGADPMAVLRDLAEV 328
>gi|354559342|ref|ZP_08978592.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
gi|353542931|gb|EHC12391.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
metallireducens DSM 15288]
Length = 556
Score = 203 bits (517), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 176/292 (60%), Gaps = 6/292 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ V ++L N + + +IA YLF GPRGTGKT+ AK+ + ALNC
Sbjct: 5 ALYREWRPKNFSEMVGQEHVTKTLTNALKQEKIAHAYLFSGPRGTGKTTAAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH--LSAGLPSASPRF 577
+PC C C G + +E+D + +G+D +R + ++ LSAG ++
Sbjct: 65 ENPGGVEPCNQCSSCLSIDQGNAMEVLEIDAASNRGIDEIRELRENVRLSAG----EGKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPKRVVFILATTEVQKIPLTILSRVQRFEFHRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I RL+++ + V P+AL +IA ++G LRDA ++LDQ LL I V +++
Sbjct: 181 EQIETRLQEVCQSIDRTVLPEALKIIAQKSEGGLRDALSILDQCLLLDGDIGVEHVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G+V EE +LL++ ++ D A+ + E ++ G DP ++ + + ++
Sbjct: 241 GMVGEEYSAQLLDILLTRDYAQALGLLTEGINQGRDPRQILKEFMEYLRQVL 292
>gi|242372721|ref|ZP_04818295.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
gi|242349638|gb|EES41239.1| DNA-directed DNA polymerase [Staphylococcus epidermidis M23864:W1]
Length = 560
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/342 (32%), Positives = 187/342 (54%), Gaps = 6/342 (1%)
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+NC+ +D
Sbjct: 2 YRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAINCLNSDD 61
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDE 584
+PC C C G + + +E+D + G+D +R I + PS S ++KV++IDE
Sbjct: 62 GEPCNECEICRGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYKVYIIDE 119
Query: 585 CHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARL 644
H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I IV RL
Sbjct: 120 VHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAISMDQIVDRL 179
Query: 645 RKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGVVSEE 703
+ ++ ++L+ + AL+ IA ++G +RDA +++DQ G +++T + G V E
Sbjct: 180 KFVADSQSLDYDEAALEFIAKASEGGMRDALSIMDQAIAFGEEKLTLQDALNVTGSVDEA 239
Query: 704 KLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYTIGGRSL 760
L EL + ++ D R + G + L++ + + D I TI +L
Sbjct: 240 ALNELFKDVVNGDVKAAFGRYHHFISEGKEVNRLINDMIYFVRDTIMNKTSNETIEFDAL 299
Query: 761 TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ EL+ L + ++++ +R S + F L++L M
Sbjct: 300 IDFELDMLYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM 341
>gi|404491942|ref|YP_006716048.1| DNA polymerase III subunits gamma and tau [Pelobacter carbinolicus
DSM 2380]
gi|77544072|gb|ABA87634.1| DNA polymerase III, gamma and tau subunits [Pelobacter carbinolicus
DSM 2380]
Length = 582
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 161/258 (62%), Gaps = 3/258 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P FD+L+GQ V Q+L N I GR+ +LF G RG GKTS A+IF+ ALNC
Sbjct: 6 LARKYRPQSFDDLVGQEHVSQTLGNAIKTGRVHHAFLFTGARGVGKTSAARIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C+ C + +G+ + E+DG + G+D +R + +++ LPS S R+K+F
Sbjct: 66 QGLSPQPCNVCQSCREISAGQGLDVFEIDGASNTGVDDIRELRENIRY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ FIF TT+ +P +I SRCQ++ F KI I
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPEHAKFIFATTEPHKIPITILSRCQRFDFRKIPLPLI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
VARL++I+A E +++ +L L+A +GS+RDA++ DQ ++ G + V L+G+
Sbjct: 184 VARLKEIAAAEGISISERSLGLVARRGEGSMRDAQSTFDQVIAFCGDAVGEDDVQGLLGM 243
Query: 700 VSEEKLLELLELAMSSDT 717
V L++ LE + D+
Sbjct: 244 VDRRLLVDTLESLLGHDS 261
>gi|260591457|ref|ZP_05856915.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
gi|260536488|gb|EEX19105.1| DNA polymerase III, gamma and tau subunit [Prevotella veroralis
F0319]
Length = 604
Score = 203 bits (517), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 112/361 (31%), Positives = 200/361 (55%), Gaps = 18/361 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTKEGEACNECESCKAFTEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L+ ++ +EN+ E AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 INHLKAVAEKENIQYEEQALNIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ E+ ++ LA+ + ++ + +++ G D L++ LAS + +++ T+
Sbjct: 246 LDEDNYFNIINLALENKVSDIMVLLNNVINKGFDGGHLINGLASHVRNVLMAKDAQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+++ + +R L +ALK+++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSDQQRKRYQEQAQKCPTLFLYNALKIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 D 806
D
Sbjct: 366 D 366
>gi|338732465|ref|YP_004670938.1| DNA polymerase III subunit gamma/tau [Simkania negevensis Z]
gi|336481848|emb|CCB88447.1| DNA polymerase III subunit gamma/tau [Simkania negevensis Z]
Length = 491
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 176/286 (61%), Gaps = 4/286 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L++KY+P F E+ Q+ +VQ++ N + R+ YLF G RGTGKT+ A++F+ ALN
Sbjct: 5 QGLAKKYRPQKFSEVFQQDPIVQTIKNALRLNRVGHAYLFCGTRGTGKTTLARLFAKALN 64
Query: 519 CV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C +D+ +PC C C + +SG S + +EVDG + +G+D +R + + + G S+S ++
Sbjct: 65 CQNLSDEQEPCNNCPSCKEVVSGHSLDVIEVDGASNRGIDDIRNL--NETVGYASSSGKY 122
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+++IDE H+L + + A LK LEEPP+ V+F F TT+ V +I SRCQ++ +I
Sbjct: 123 KIYIIDEVHMLTKEAFNALLKTLEEPPEHVIFFFATTEPHKVLPTIISRCQRFDLKRITP 182
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696
I+ +L++I + E DAL LIA +ADGSLRDAE++LD+L + IT+ ++E
Sbjct: 183 EKILEKLKQILQDLGFQAEEDALHLIAAHADGSLRDAESLLDRLLCFHEEEITAEKLSET 242
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
+G+VS + +L + A+S D + + ++ + G + LA
Sbjct: 243 LGLVSRDLFFKLDQAALSHDLLFAFQLSEQVFNEGAHLEYFLESLA 288
>gi|218442642|ref|YP_002380962.1| DNA polymerase III subunits gamma/tau [Cyanothece sp. PCC 7424]
gi|218175000|gb|ACK73732.1| DNA polymerase III, subunits gamma and tau [Cyanothece sp. PCC
7424]
Length = 462
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 203/390 (52%), Gaps = 21/390 (5%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + L KY+P F +LIGQ ++ ++L N I+ +IA YLF GPRGTGKTSTA+I +
Sbjct: 5 ENYQPLHLKYRPQQFKDLIGQELISRALKNAIASLKIANSYLFTGPRGTGKTSTARILAK 64
Query: 516 ALNCVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
ALNC +T T PCG C C G S N E+D + G+D R +++ +
Sbjct: 65 ALNCKSTPHSTTHPCGKCPSCQSIERGSSINVNEIDAASHNGVDDARSLIEQ--SHFAPI 122
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R++VF++DECH+L +++ A LK +EE P + VFI TT+ + +I SRCQ + F
Sbjct: 123 DGRYRVFILDECHMLTNQSQNALLKTIEETPPQCVFILCTTEPHKLLPTISSRCQTFNFK 182
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
+ L +I+ +EN+N PD + IA+ A+G LRD +L LSLL ITS LV
Sbjct: 183 NTSLKTLSQHLTQIAQQENINTTPDGIKAIAVQANGGLRDGLQLLSGLSLLSCEITSDLV 242
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---- 749
+ +S + + +L++ ++ T + + REL++ G P ++ L D++
Sbjct: 243 IKATNGLSPQTISQLVQKILTGQTLDLLIAGRELIEEGKTPQSILKSLTETYRDLLLLKS 302
Query: 750 ---AGTYTIGGRSLTE-------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
T +LT ELE L L+ L ++E QL+ + W LL+L
Sbjct: 303 DFKCHTLISNSSNLTHLKQLADSTELEILDQGLQQLIQSEAQLKTNLNATVWLEICLLKL 362
Query: 800 ---GSMHSPDLTQSGSSRRQSSRTTEEDPS 826
+ P ++ R++ + +E PS
Sbjct: 363 IPATPIFLPPISNHNGQRKREQQQSEVSPS 392
>gi|168206163|ref|ZP_02632168.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
E str. JGS1987]
gi|170662345|gb|EDT15028.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
E str. JGS1987]
Length = 547
Score = 203 bits (516), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/442 (30%), Positives = 226/442 (51%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L D++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRDLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK +K++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIKIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EA K ++ Q QNA+
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEASNNKTLNNKQ---QNAIK 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 NSNNYEVVNENSTLTPEYLRKV 440
>gi|365838884|ref|ZP_09380141.1| DNA polymerase III, subunit gamma and tau [Anaeroglobus geminatus
F0357]
gi|364566394|gb|EHM44086.1| DNA polymerase III, subunit gamma and tau [Anaeroglobus geminatus
F0357]
Length = 648
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/383 (31%), Positives = 210/383 (54%), Gaps = 20/383 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++GQ + ++L I ++A YLF GPRGTGKTSTAKIF+ A+NC
Sbjct: 5 ALYRKWRPKLFEDVVGQRHITETLQQAIKNDKVAHAYLFSGPRGTGKTSTAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V +PC C C SG+S + +E+D + + ++ +R L+ +P+ + K+
Sbjct: 65 VHGPTLRPCNECPVCRHITSGESLDVVEIDAASNRSIEDIRQ-LRETVKFMPTEGDK-KI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ + +P +I SRCQ+Y F +I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTEPERIPMTILSRCQRYEFRRITSHD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL I+++E++ + A +IA+ ADG +RDA ++LDQ + G + LV +L+G
Sbjct: 183 IGERLMYIASQEHIALTEGAAHIIAVQADGGMRDALSLLDQCIGNGGGTVDEVLVRQLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL-----ASLIMDIIAGTY 753
+V ++ L + +K E++ G +P VL++++ A ++ G+
Sbjct: 243 LVGKDWLFMMTTALFHRHNDILIKGVDEIIAMGKEPQVLLTEIIAHLRAVMLYKAAPGSD 302
Query: 754 TIGGRSLTEAELE---------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
T+ + +E EL+ ++ L +L EA +++ S A LL +S
Sbjct: 303 TLAAYADSEKELQEQAATVSAGQVFAVLNILQEALLRVKTSPLPRIAVEAGLLMAARTYS 362
Query: 805 ---PDLTQSGSSRRQSSRTTEED 824
DLT+ + + + T +D
Sbjct: 363 HEGEDLTKRVKALEERAYTVPQD 385
>gi|89892857|ref|YP_516344.1| hypothetical protein DSY0111 [Desulfitobacterium hafniense Y51]
gi|89332305|dbj|BAE81900.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 557
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 175/284 (61%), Gaps = 6/284 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ+ V ++L N + + ++A YLF GPRGTGKT+TAK+ + ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
+ +PC C C G + E+D + +G+D +R + LSAG ++
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAG----ESKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I + L K+ +VEP+AL +IA ++G LRDA ++LDQ LL ++ V +++
Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G+V EE +L++ ++ D A+ + E ++ G+DP ++ +L
Sbjct: 241 GMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIREL 284
>gi|312126881|ref|YP_003991755.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
hydrothermalis 108]
gi|311776900|gb|ADQ06386.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
hydrothermalis 108]
Length = 534
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 198/364 (54%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q+ + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 64 LNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSVCKKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ A +G +
Sbjct: 242 VTSTEIVKEFIAAIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLRS--ALILRLGAK 299
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ LE RL ++K+L + Q+R T F LL++ ++
Sbjct: 300 DVLVDMLESDKSFVMNISNLVDSNRLVSSIKMLIDTANQVRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|78043423|ref|YP_361464.1| DNA polymerase III subunit gamma and tau [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995538|gb|ABB14437.1| putative DNA polymerase III, gamma/tau subunits [Carboxydothermus
hydrogenoformans Z-2901]
Length = 511
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/353 (32%), Positives = 194/353 (54%), Gaps = 14/353 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E++GQ +V+ L N ++ ++A YLF GPRGTGKT+TAK+ + A+NC
Sbjct: 4 ALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C + N E+D + +G+D +R + + S L A ++KV
Sbjct: 64 EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRE--SIKLVPAQGKYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ V+FI TT+ + VP +I SRCQ++ F +I
Sbjct: 122 YIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKT 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I L+ I+ +E L E +AL LIA ++G LRDA +++DQ+ + +IT +++G
Sbjct: 182 IWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGF 241
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
VS K+LEL+ ++ + + E+++ G+D + + Q+ + + I
Sbjct: 242 VSWRKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQILQYVRYLNLIKNGIEVEE 301
Query: 760 LTEAELERLKHALKLLSE------------AEKQLRLSSERCTWFTATLLQLG 800
L LE+L+ L E E+++R +S W LL++
Sbjct: 302 LMPEVLEKLRSEAALWEEDKLFLLWDDIARLEREVRYASFPRIWAEVGLLKVA 354
>gi|336428714|ref|ZP_08608690.1| hypothetical protein HMPREF0994_04696 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336004561|gb|EGN34622.1| hypothetical protein HMPREF0994_04696 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 526
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 157/274 (57%), Gaps = 4/274 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPERFEDVKGQDHIVTTLRNQIEADRIGHAYLFCGTRGTGKTTIAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG CR C +G S N +E+D + G+D +R I+ +S A RFKV
Sbjct: 65 ENPVDGSPCGECRSCRSIAAGASMNVIEIDAASNNGVDNIREIVDEVSYS--PAEGRFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPVTILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I RLR + +EN V+ AL +A ADGS+RDA ++LDQ GK +T +V +++
Sbjct: 183 ITDRLRDLMVQENQQVQEKALRYVAKAADGSMRDALSLLDQCIAFHYGKELTYDMVLDVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
G V E LL + + + E++ G
Sbjct: 243 GAVDTEVFSRLLRAVLERSVTDCIGILEEIVMQG 276
>gi|83313202|ref|YP_423466.1| DNA polymerase III subunits gamma and tau [Magnetospirillum
magneticum AMB-1]
gi|82948043|dbj|BAE52907.1| DNA polymerase III, gamma/tau subunits [Magnetospirillum magneticum
AMB-1]
Length = 599
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 114/340 (33%), Positives = 187/340 (55%), Gaps = 14/340 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ +V++L N I GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 14 RVLARKYRPTDFAGLIGQEAMVRTLSNAIKTGRLAHAFVLTGVRGVGKTTTARIIARALN 73
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C + + +E+D ++ G++ +R I++ + SA
Sbjct: 74 CVGLDGKGGPTIDPCGQCEHCRAIAEDRHVDILEMDAASRTGVNDIREIIEGVRYRPTSA 133
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
RFK+++IDE H+L + + A LK LEEPP+ V F+F TT+I +P ++ SRCQ++
Sbjct: 134 --RFKIYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPVTVLSRCQRFDLR 191
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+++ + I+A+E +EP AL LIA ADGS+RD ++LDQ +S +T +
Sbjct: 192 RVEMEVLAKHFESIAAKEQAEIEPAALKLIARAADGSVRDGLSLLDQAISHGAGAVTEAQ 251
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V +++G+ ++ +LL+ M + + + +G DP+V++ + L+ +
Sbjct: 252 VRDMLGLADRARVFDLLDAIMKGQVPAALDQITDQYAAGADPVVVLQDMLELVHWLTRLK 311
Query: 753 YTI-GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTW 791
T L +E ER+K A E K L L++ W
Sbjct: 312 VTPDAADQLGASETERVKGA-----EMSKTLSLAALTRAW 346
>gi|427406934|ref|ZP_18897139.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. F0473]
gi|425707907|gb|EKU70950.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. F0473]
Length = 615
Score = 203 bits (516), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 195/357 (54%), Gaps = 21/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRRWRPECFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG+C C G S + E+D + +G+D +R + + + R+K+
Sbjct: 65 AEGPTLSPCGHCDSCRAIGDGSSMDVFEIDAASNRGIDEIRDLRE--TVKFAPTEGRYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPNVLFILATTEPHKVPATIQSRCQRYDFHRITVTE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + DAL +IA ADG +RDA ++LDQ S L + +T+ V E +G
Sbjct: 183 IRDRLSYVCRESGIAAAEDALGIIAAAADGGMRDALSILDQCSALAEGELTAERVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGTYT 754
+V ++ +L + A + L+ SG + ++S+LA SL++ + G T
Sbjct: 243 LVGNTRITQLAMQIADKNAAALLTNLGALLQSGRELKQILSELALYFRSLMIAGVGG--T 300
Query: 755 IGGRSLTEAELERLKHA------------LKLLSEAEKQLRLSSERCTWFTATLLQL 799
+G L + E L+ A L+ L+E ++LR + + A LL L
Sbjct: 301 LGAAELYGTQEESLRTAAERFTQEEIMEILRRLNETMRELRSAPQPRIAAEAMLLSL 357
>gi|423075844|ref|ZP_17064558.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
gi|361853072|gb|EHL05258.1| DNA polymerase III, subunit gamma and tau [Desulfitobacterium
hafniense DP7]
Length = 554
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 175/284 (61%), Gaps = 6/284 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ+ V ++L N + + ++A YLF GPRGTGKT+TAK+ + ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
+ +PC C C G + E+D + +G+D +R + LSAG ++
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAG----ESKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I + L K+ +VEP+AL +IA ++G LRDA ++LDQ LL ++ V +++
Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G+V EE +L++ ++ D A+ + E ++ G+DP ++ +L
Sbjct: 241 GMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIREL 284
>gi|317120921|ref|YP_004100924.1| DNA polymerase III subunits gamma and tau [Thermaerobacter
marianensis DSM 12885]
gi|315590901|gb|ADU50197.1| DNA polymerase III, subunits gamma and tau [Thermaerobacter
marianensis DSM 12885]
Length = 825
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 174/296 (58%), Gaps = 10/296 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+ ++L + ++P FD ++GQ V+++L N + GR+A YLF GPRGTGKTS AK+ +
Sbjct: 3 QPYQALYRSWRPQRFDGVVGQEHVIRTLANALRTGRVAHAYLFAGPRGTGKTSVAKLLAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
A+NC++ + +PC C C + G + + +E+D + +G+D +R + + + A
Sbjct: 63 AVNCLSPEGVEPCNRCEVCREINDGSTMDVLEIDAASNRGIDEIRELRERVR--YAPARA 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV++IDE H+L ++ + A LK LEEPP +FI TT+ +P +I SRCQ++ F+++
Sbjct: 121 RYKVYIIDEVHMLTTEAFNALLKTLEEPPAHALFILATTEPHRLPATIVSRCQRFDFHRL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
I+ RL+ + + EP AL L+A A+G LRDA ++LDQ L++ G R+ + +V
Sbjct: 181 TPEQILERLQAVCTAMGVEAEPAALRLLARLAEGGLRDALSLLDQSLAMAGDRLDAQVVA 240
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
+L+G+ E +L L + D ++ EL GVD LA + D +A
Sbjct: 241 DLLGLAPGEGILALTRAVVEGDVGAGLQAVAELSAQGVD-------LAQALRDWVA 289
>gi|219666120|ref|YP_002456555.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
gi|219536380|gb|ACL18119.1| DNA polymerase III, subunits gamma and tau [Desulfitobacterium
hafniense DCB-2]
Length = 554
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 175/284 (61%), Gaps = 6/284 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ+ V ++L N + + ++A YLF GPRGTGKT+TAK+ + ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQDHVTKTLTNALMQSKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
+ +PC C C G + E+D + +G+D +R + LSAG ++
Sbjct: 65 EHREGVEPCNQCAFCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAG----ESKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I + L K+ +VEP+AL +IA ++G LRDA ++LDQ LL ++ V +++
Sbjct: 181 EQIHSHLDKVCQTIGRDVEPEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G+V EE +L++ ++ D A+ + E ++ G+DP ++ +L
Sbjct: 241 GMVGEEFSAQLVDHLLTGDYAKALGCLGEGINQGMDPRQIIREL 284
>gi|121602189|ref|YP_989487.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
KC583]
gi|421761289|ref|ZP_16198092.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
INS]
gi|120614366|gb|ABM44967.1| DNA polymerase III, subunits gamma and tau [Bartonella
bacilliformis KC583]
gi|411173073|gb|EKS43121.1| DNA polymerase III subunits gamma and tau [Bartonella bacilliformis
INS]
Length = 634
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 8 RVLARKYRPQNFSDLIGQETMVRTLTNAFEAGRIAQAWILTGIRGVGKTTTARILARALN 67
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D KP C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 68 YETKDINKPTTVFNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYCPVSA- 126
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 127 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 185
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
++ +VA L KI+ E + V+ AL +IA A+GS+RDA ++ DQ ++ +I ++ V
Sbjct: 186 VESSALVAHLHKIAQHEKVEVQEQALSIIARAAEGSVRDALSIFDQAIAHSNGKINATAV 245
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L + M D + R D+G DP ++++LA+
Sbjct: 246 RTMLGLADQARIIDLFDYVMKGDIVSALHELRSQYDAGADPFSVLAELANF 296
>gi|223043407|ref|ZP_03613453.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
gi|417905868|ref|ZP_12549665.1| DNA polymerase III, subunit gamma and tau [Staphylococcus capitis
VCU116]
gi|222443196|gb|EEE49295.1| DNA polymerase III subunit gamma/tau [Staphylococcus capitis SK14]
gi|341598538|gb|EGS41042.1| DNA polymerase III, subunit gamma and tau [Staphylococcus capitis
VCU116]
Length = 568
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRAQRFDFKAISMN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
IV RL+ ++ ++L + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L +L + + + E R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNDLFKDVVEGNVKEAFGRYHHFISEGKEVNRLINDMIYFVRDTIMIKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
I +L EL+ L + ++++ +R S + F L++L M
Sbjct: 302 IEYDALVSFELDTLYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM 349
>gi|434408329|ref|YP_007151393.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
gi|428272082|gb|AFZ38022.1| DNA polymerase III, subunits gamma and tau [Stanieria cyanosphaera
PCC 7437]
Length = 461
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/383 (33%), Positives = 206/383 (53%), Gaps = 19/383 (4%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
++SL KY+P ++LIGQ + +L N +S +IAP YLF GPRGTGKTSTA+I + +L
Sbjct: 1 MKSLPLKYRPQQLEDLIGQEFIKTTLKNALSAKKIAPAYLFSGPRGTGKTSTARILAKSL 60
Query: 518 NCVATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
NC+A +Q KPCG C C + + E+D + G+D R +++ + L A
Sbjct: 61 NCLAVEQPTIKPCGECSSCRSIERSNAIDVTEIDAASHNGVDNARELIE--LSHLAPAQV 118
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KVF++DE +L S LK LEEPP+R +FI TT++ + +I SRCQ + F +
Sbjct: 119 RYKVFILDESQMLTSAAQNTLLKLLEEPPERTIFILCTTELHKILPTIVSRCQLFNFKSL 178
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
++ L +I+ E +++ P+A+ I+ + GSLRD+ +L QL +L ++IT V E
Sbjct: 179 SQTAVIDYLSQIATTEEIDLTPEAIAAISKSGLGSLRDSLQLLSQLQVLRQQITLDNVIE 238
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
VG +S +++ +L+ + D + AR L+ G P +++ L + D++ T
Sbjct: 239 AVGGISSQQMWKLMTNLVKEDVLNVLLIARNLIQMGKSPQLILQDLLNCHRDLLLVKATQ 298
Query: 756 -GGRSLTEAELE--------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
G+SL + LE ++ L+ L + E+QLR S W LL +
Sbjct: 299 KDGKSLLSSNLEYSKLDQLASKISWHHIERNLEQLQKREQQLRFSINNAVWLETCLLNMM 358
Query: 801 SMHSPDLTQSGSSRRQSSRTTEE 823
S + TQ+ + RQ T++
Sbjct: 359 DSTSINETQTLLNNRQHRTKTQK 381
>gi|119386357|ref|YP_917412.1| DNA polymerase III subunits gamma and tau [Paracoccus denitrificans
PD1222]
gi|119376952|gb|ABL71716.1| DNA polymerase III, subunits gamma and tau [Paracoccus
denitrificans PD1222]
Length = 592
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 174/294 (59%), Gaps = 8/294 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I +
Sbjct: 7 NYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFVMTGIRGTGKTTTARIIAKG 66
Query: 517 LNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
LNC D T+PCG C C G+ + ME+D ++ G++ +R I++ S
Sbjct: 67 LNCTGPDGQGGPTTEPCGVCEHCVAISEGRHVDVMEMDAASRTGVNDIREIIE--SVHYR 124
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
+AS R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 125 AASARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFD 184
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITS 690
+I+ ++A LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+
Sbjct: 185 LRRIEPEVMIALLRRIATTEGAQITDDALALITRAAEGSARDATSLLDQAISHGAGETTA 244
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ V ++G+ ++L+L ++ + AE + + G DPM ++ LA +
Sbjct: 245 TQVRAMLGLADRGRVLDLFDMILRGAAAEALAELQAQYADGADPMAVLRDLAEI 298
>gi|451941515|ref|YP_007462152.1| DNA polymerase III subunit gamma/tau [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
gi|451900902|gb|AGF75364.1| DNA polymerase III subunit gamma/tau [Bartonella vinsonii subsp.
berkhoffii str. Winnie]
Length = 646
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 172/291 (59%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFVTGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCG----YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P + C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDINQPTTLLDIFGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
++ + A LR+I+ EN+ VE AL +IA A+GS+RDA ++ DQ ++ +++ V
Sbjct: 189 VESAVLSAHLRQIAKHENVEVEDQALSMIARAAEGSVRDALSIFDQAIAHSNGNVSAIAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQTRIIDLFEFIMKGNVVDALHELRSQYDAGADPLTILTELADF 299
>gi|312142719|ref|YP_003994165.1| DNA polymerase III subunits gamma and tau [Halanaerobium
hydrogeniformans]
gi|311903370|gb|ADQ13811.1| DNA polymerase III, subunits gamma and tau [Halanaerobium
hydrogeniformans]
Length = 602
Score = 202 bits (515), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 110/277 (39%), Positives = 172/277 (62%), Gaps = 10/277 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P F +LIGQ+ VVQ+L N + R+A YLF GPRGTGKTSTAK+F+ ALNC
Sbjct: 5 SLYRKYRPEDFTDLIGQDHVVQTLKNALKNDRVAHAYLFAGPRGTGKTSTAKVFAKALNC 64
Query: 520 V--ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
A D +PCG C C SG S + +E+D + +G+D +R + + + ++
Sbjct: 65 ADPAAD-LEPCGECNSCQRISSGSSLDVIEIDAASNRGIDEIRELREKVK--FYPGEGQY 121
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP VVFI TT+ V +I SRCQ++ F +
Sbjct: 122 KVYIIDEVHMLTTGAFNALLKTLEEPPDSVVFILATTEPHKVITTIMSRCQRFDFTLLSL 181
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
GDI RL+ I+ +E ++ ALD++A +A G +RD ++LDQ +S ++ + + +
Sbjct: 182 GDIKMRLKYIAEQEGYEIDAAALDILARSARGGMRDGISLLDQAISFSDGQLAAEEIARM 241
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+G V+++KL E L L +S + ++ +A +L+D ++
Sbjct: 242 LGRVNKDKLKEFL-LYLSKNQSQ---KALQLLDKQLE 274
>gi|407799802|ref|ZP_11146680.1| DNA polymerase III subunits gamma and tau [Oceaniovalibus
guishaninsula JLT2003]
gi|407058279|gb|EKE44237.1| DNA polymerase III subunits gamma and tau [Oceaniovalibus
guishaninsula JLT2003]
Length = 578
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 110/292 (37%), Positives = 168/292 (57%), Gaps = 7/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ+ +V++L N RIA ++ G RGTGKT+TA+I + LN
Sbjct: 7 RVLARKYRPETFDDLIGQDAMVRTLRNAFKADRIAQAFILTGIRGTGKTTTARIVAKGLN 66
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D T PCG C C G+ + +E+DG ++ G+ +R + S A
Sbjct: 67 CVGPDGQGGPTTSPCGVCEPCRAIAEGRHVDVLEMDGASQTGVGDIRESVIG-SVQYAPA 125
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 126 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLR 185
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-L 692
+I+ ++A LR I+ +E NV AL LIA A+GS RDA ++LDQ G T +
Sbjct: 186 RIEPDAMIAHLRGIAGKEGANVTDSALALIARAAEGSARDALSLLDQAIAHGAGETGAEQ 245
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ ++L+L ++ + D A + G DP ++ LA +
Sbjct: 246 VRDMLGLADRGRVLDLFDMILRGDAAGALTELGAQYAEGADPAAVLRDLAEV 297
>gi|312897409|ref|ZP_07756833.1| DNA polymerase III, subunit gamma and tau [Megasphaera
micronuciformis F0359]
gi|310621470|gb|EFQ05006.1| DNA polymerase III, subunit gamma and tau [Megasphaera
micronuciformis F0359]
Length = 627
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 178/290 (61%), Gaps = 6/290 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++GQ ++++L + ++A YLF GPRGTGKTSTAKIF+ ALNC
Sbjct: 5 ALYRKWRPKTFEDVVGQGRIMKTLQQAVENDKVAHAYLFSGPRGTGKTSTAKIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V + PC C C SG+S + +E+D + + ++ +R L+ +P+ + K+
Sbjct: 65 VHGPTSHPCNECDVCKHITSGESLDVVEIDAASNRSIEDIRQ-LRETVKFMPTEGHK-KI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ VVFI TT+ + +P +I SRCQ+Y F +I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPERIPMTILSRCQRYDFRRITADD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVG 698
I RL I+ +E ++++PDA +IA+ ADG +RDA ++LDQ G R + +V +L+G
Sbjct: 183 IQKRLAYIADKEEIDLKPDAARMIAVRADGGMRDALSLLDQCVGNGGRCVDEEIVRDLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+V ++ L + S ++ E++ +G + + + LA ++M +
Sbjct: 243 LVGKDWLFSMTAALFSGRGETLIEGIDEVVQAGKE---VQNVLADMVMHL 289
>gi|317504994|ref|ZP_07962942.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
gi|315663876|gb|EFV03595.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella salivae DSM
15606]
Length = 599
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/369 (31%), Positives = 198/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P+ FD ++GQ+ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMTFDSVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEN 67
Query: 522 TDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
Q + C C C F +S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PSQDGEACNVCESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQIGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ G+
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++A+E + + +AL +IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 IEHLKSVAAKEGITYDDEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++++ A+S+ +E + ++ G D L+S LA + +++
Sbjct: 246 LDSDYYFKIVDFALSNKVSEIMVLVNNILSKGFDGGNLISGLACHVRNVLMARDETTLPL 305
Query: 760 LTEAELERLKH--------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L +E +R K+ ALKLL++ + + SS + TL+Q+ + P
Sbjct: 306 LETSEQQRKKYHEQAKKCPVQYLYQALKLLNQCDINYKQSSNKRLLVEITLIQVAQITQP 365
Query: 806 DLTQSGSSR 814
D G+ R
Sbjct: 366 DDDTPGAGR 374
>gi|340029168|ref|ZP_08665231.1| DNA polymerase III subunits gamma and tau [Paracoccus sp. TRP]
Length = 591
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 174/294 (59%), Gaps = 8/294 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I +
Sbjct: 7 NYQVLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKG 66
Query: 517 LNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
LNC+ D T+PCG C C G+ + ME+D ++ G+ +R I++ S
Sbjct: 67 LNCIGPDGQGGPTTEPCGTCEHCVAISEGRHVDVMEMDAASRTGVSDIREIIE--SVHYR 124
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
+AS R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 125 AASARYKIYIIDEVHMLSTSAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFD 184
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITS 690
+I+ ++A LRKI+ E + DAL LI A+GS RDA ++LDQ +S T+
Sbjct: 185 LRRIEPEVMIALLRKIAGREGAEITDDALALITRAAEGSARDATSLLDQAISHGAGETTA 244
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ V ++G+ ++L+L ++ + AE + + G DP+ ++ LA +
Sbjct: 245 AQVRAMLGLADRGRVLDLFDMILRGAAAEALAELQAQYADGADPLAILRDLAEI 298
>gi|189423436|ref|YP_001950613.1| DNA polymerase III subunits gamma and tau [Geobacter lovleyi SZ]
gi|189419695|gb|ACD94093.1| DNA polymerase III, subunits gamma and tau [Geobacter lovleyi SZ]
Length = 551
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 180/331 (54%), Gaps = 10/331 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F L GQ V ++L N I GR+A +LF G RG GKTSTA+I + ALNC
Sbjct: 6 LARKYRPQTFAGLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C C + G S + E+DG + G+D VR L+ S LPS S R+K++
Sbjct: 66 QGVTLEPCNVCPHCREITDGSSTDVFEIDGASNTGVDDVRE-LRDNSRYLPSHS-RYKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ +P +I SRCQ++ F ++ I
Sbjct: 124 IIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFKRVPLIKI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RLR+I+ +E + + AL LIA DGS+RD+ T DQ L+ G + V LVGV
Sbjct: 184 VGRLREIADQEGIVINDAALALIARKGDGSMRDSITCFDQVLAFCGNTVAVEDVATLVGV 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS-----LIMDIIAGTYT 754
V L EL + DT ++ R + G + +L S L++ +
Sbjct: 244 VDRRLLAELSSAVFAGDTQGALEGVRRVDAFGYNVRQFTQELISHFRNLLVIRSVPKPGE 303
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLS 785
I L EAELE L+ S A+ Q RL+
Sbjct: 304 I--LDLAEAELEELRQQAGEQSAADIQRRLT 332
>gi|345862373|ref|ZP_08814597.1| DNA polymerase III, subunits gamma and tau [Desulfosporosinus sp.
OT]
gi|344324514|gb|EGW36068.1| DNA polymerase III, subunits gamma and tau [Desulfosporosinus sp.
OT]
Length = 557
Score = 202 bits (515), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 213/392 (54%), Gaps = 34/392 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ + ++LVN + + +IA YLF GPRGTGKT+ AKI + ALNC
Sbjct: 5 ALYREWRPRKFKDIVGQEHITKTLVNALKQEKIAHAYLFSGPRGTGKTTAAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
D +PC +C C G + E+D + +G+D +R + +++ L + + KV
Sbjct: 65 EERDGEEPCNHCASCLSIDHGSAMEVFEIDAASNRGIDEIRDLRENVK--LSAIQGKHKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP +VVFI TT++ +P +I SR Q++ F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAQVVFILATTEVQKIPLTILSRVQRFEFHRISVEN 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I RL ++ N V P AL +IA ++G LRDA ++LDQ L I V +++G+
Sbjct: 183 IQKRLLQVCTYLNRQVNPSALVVIAQKSEGGLRDALSILDQCLLQNDPIGVEEVYQVLGM 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT----- 754
V E +L+E ++SD A+++ E + G DP ++ +L + ++ T
Sbjct: 243 VGETFSAQLVEALITSDYAKSLNFLTEGIQQGRDPRQIIRELLDYLRQMLLTGATGKTPL 302
Query: 755 ----IGGRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807
I + + +++L R+ + +L + E QL+ +S A LL + ++H
Sbjct: 303 VAPHIKDQLVKQSQLVGISRMLRWISILLQGEGQLKYASN--ARLAAELLLVQTIH---- 356
Query: 808 TQSGSSRRQSSRTTEEDPSSTSREAVVYKRMS 839
E +P+STS + + KR+S
Sbjct: 357 --------------ESEPTSTSGQEAILKRLS 374
>gi|386813540|ref|ZP_10100764.1| DNA polymerase III gamma/tau subunits [planctomycete KSU-1]
gi|386403037|dbj|GAB63645.1| DNA polymerase III gamma/tau subunits [planctomycete KSU-1]
Length = 555
Score = 202 bits (515), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 109/284 (38%), Positives = 171/284 (60%), Gaps = 9/284 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++Y+P F++L+GQ +V +L N I R+A YL GPRG GKTS A+I S ALNC
Sbjct: 6 LARRYRPQTFEDLVGQESIVTTLRNAIRFNRVAHAYLLAGPRGVGKTSMARIVSKALNCQ 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C GK + +E+DG + +G+D VR I ++++ PS + R+K++
Sbjct: 66 HGPTDTPCNTCDICRCISEGKDIDVLEIDGASNRGIDEVRNIRQNVNYA-PSRA-RYKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT ++ +P ++QSRCQ++ F I DI
Sbjct: 124 IIDEVHMLTREAFNALLKTLEEPPPHVKFIFATTAVNRLPETVQSRCQRFDFKNISIHDI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
RL IS E ++++P AL +IA A G LRD++++LDQ LS ++ VN ++G
Sbjct: 184 EKRLLDISKAEGVHIDPLALHMIARYAKGGLRDSQSVLDQLLSFCKDTVSLEDVNFVLGC 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSG------VDPMVL 737
+ E+KLL + + + + + +K +++ G +D M+L
Sbjct: 244 IDEDKLLGMFDSFVKKEVSSALKIVDTVLNEGKTCGEFIDQMLL 287
>gi|325105012|ref|YP_004274666.1| DNA polymerase III subunits gamma and tau [Pedobacter saltans DSM
12145]
gi|324973860|gb|ADY52844.1| DNA polymerase III, subunits gamma and tau [Pedobacter saltans DSM
12145]
Length = 605
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 169/297 (56%), Gaps = 4/297 (1%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P+ F+ ++GQ + +L N I ++A +LF GPRG GKT+ A+I +
Sbjct: 1 MENFIVSARKYRPVTFESVVGQLHITNTLKNAIKSNQLAQAFLFCGPRGVGKTTCARILA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T Q + CG C CN F+ G S NF E+D + +D +R ++ + +P
Sbjct: 61 KTINCQNLTAQGEACGICESCNSFLHGNSFNFHELDAASNNSVDDIRNLIDQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ + FN
Sbjct: 119 GGKYKVYIIDEVHMLSQSAFNAFLKTLEEPPAYAIFILATTEKHKILPTILSRCQIFDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSL 692
+IK D+ L KI+ E + + D L LIA ADG LRDA +M DQ++ R I+
Sbjct: 179 RIKVEDMAGHLSKIATREEITFDNDGLHLIAQKADGGLRDALSMFDQIASFSNRNISYQA 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V + + ++ + +L + DTA T+ E++++G D +S LAS +++
Sbjct: 239 VIDNLNILDYDYYFKLTDFLNQEDTASTLLLFNEILNNGFDGNHFISGLASHFRNVL 295
>gi|114763364|ref|ZP_01442771.1| DNA polymerase III subunits gamma and tau [Pelagibaca bermudensis
HTCC2601]
gi|114543902|gb|EAU46913.1| DNA polymerase III subunits gamma and tau [Roseovarius sp.
HTCC2601]
Length = 588
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 169/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N GRIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 11 LARKYRPETFADLVGQDAMVRTLKNAFKAGRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 70
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + +E+D + G+ +R I+ S +AS
Sbjct: 71 GPDGEGGPTTEPCGECEHCKAIMEGRHVDVIEMDAASNTGVGDIREIID--SVHYRAASA 128
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 129 RYKIYIIDEVHMLSNSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 188
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ +++ LR+I+ E + DAL L+ A+GS RDA ++LDQ +S T+ V
Sbjct: 189 EPEVMISLLRRIATAEQAEITDDALALVTRAAEGSARDATSLLDQAISHGAGETTAEQVR 248
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D + + G DP+ ++ LA +
Sbjct: 249 AMLGLADRGRVMDLFEKIMYGDAPGALTELSQQYADGADPLAVLRDLAEI 298
>gi|336422383|ref|ZP_08602532.1| hypothetical protein HMPREF0993_01909 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336008831|gb|EGN38837.1| hypothetical protein HMPREF0993_01909 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 523
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 142/429 (33%), Positives = 222/429 (51%), Gaps = 37/429 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVKTLKNQIKAERIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + + A P+ R+KV
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I RLR++ +E VE A+ IA ADGS+RD+ ++LDQ +G+++T V E++
Sbjct: 183 ISDRLRELIDKEGWEVEEKAVRYIAKMADGSMRDSLSLLDQCVAFYIGEKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL +S D + + EL+ G + +SQLAS L++
Sbjct: 243 GAVDTETFSRLLRELLSMDVHKVIVTVEELVMQGRE----LSQLASDFTWYLRNLLLVKS 298
Query: 747 -DIIAGTYTIGGRSLT----EAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D + + +L EA++ + L +++ S+ QL+ ++++ TL++
Sbjct: 299 SDNMEDVLDVSTENLAQLKEEAQMIDNDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIK 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDPS-----STSREAVVYKRMSGP--QYMPQNAVSP 851
L P + Q+ + R E+ S RE VVY GP Q + P
Sbjct: 359 LC---RPAMDQNQDALLDRIRLIEKQLEEGLLDSAVREKVVYVNSDGPAEQKVKPRPELP 415
Query: 852 ASLREPVNG 860
+L E V
Sbjct: 416 KALNEDVKA 424
>gi|49473886|ref|YP_031928.1| DNA polymerase III subunits gamma and tau [Bartonella quintana str.
Toulouse]
gi|49239389|emb|CAF25723.1| DNA polymerase III subunit tau [Bartonella quintana str. Toulouse]
Length = 640
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 107/291 (36%), Positives = 169/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQETMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A L +I+ EN+ VE AL +IA A+GS RDA ++ DQ ++ I++ V
Sbjct: 189 IETAVLSAHLCQIAKHENVKVEDQALSMIARAAEGSARDALSIFDQAIAYSNGNISAVAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
L+G+V + ++++L E M D + R D+G DP+ ++++LA
Sbjct: 249 RALLGLVDQARIIDLFEFIMKGDIVNALHELRSQYDAGADPLTILTELADF 299
>gi|49475044|ref|YP_033085.1| DNA polymerase III subunits gamma and tau [Bartonella henselae str.
Houston-1]
gi|49237849|emb|CAF27044.1| DNA polymerase III subunit tau [Bartonella henselae str. Houston-1]
Length = 646
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A LR+I+ EN+ VE AL +IA A+GS RDA ++ DQ ++ +I++ V
Sbjct: 189 IESAVLSAHLRQIAQHENVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGKISAVTV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 249 RAMLGLADQARIIDLFEFLMKGNVVNALHELRSQYDAGADPLTILTELADF 299
>gi|33862214|ref|NP_893775.1| DNA polymerase subunits gamma and tau [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
gi|33634432|emb|CAE20117.1| DNA polymerase, gamma and tau subunits [Prochlorococcus marinus
subsp. pastoris str. CCMP1986]
Length = 579
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 114/296 (38%), Positives = 176/296 (59%), Gaps = 4/296 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ QKY+P+ DEL+GQ + +L + +IAP YLF GPRGTGKTS+A+IF+ +LN
Sbjct: 6 KPFHQKYRPLNLDELVGQEFISITLKQALISQKIAPAYLFNGPRGTGKTSSARIFAKSLN 65
Query: 519 CVATDQT--KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
C+++ Q PC C C G + + +E+D + G++ +R I+ A R
Sbjct: 66 CLSSKQPTPNPCEKCELCIQIAEGNALDIIEIDAASNTGVENIREIIDR--ARFAPTQAR 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV+VIDECH+L + A LK +EEPP+RVVFI TT+ + V +IQSRCQK+ F +I
Sbjct: 124 WKVYVIDECHMLSTAASNALLKTIEEPPERVVFILATTNPERVINTIQSRCQKFDFKRIS 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696
I L I+ +E++ E AL LIA ++G +RDA+++LDQLSLL +T+ V L
Sbjct: 184 ANTIFNNLSAIANKESIKFEDQALKLIAKRSNGGMRDAQSLLDQLSLLPNGVTTKNVQSL 243
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
+G VSE L +L+ +++ + L D+G +P ++ L ++ D++ T
Sbjct: 244 LGEVSENDLTDLINALINNQPESLLISCNNLYDAGNEPNEILVGLLNITRDLLLKT 299
>gi|85857923|ref|YP_460125.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB]
gi|85721014|gb|ABC75957.1| DNA polymerase III subunit gamma/tau [Syntrophus aciditrophicus SB]
Length = 588
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 111/296 (37%), Positives = 168/296 (56%), Gaps = 7/296 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F++++GQ VVQ+L N I + RIA +LF GPRG GKTS A+I + A+NC
Sbjct: 6 LARKWRPQVFEDVVGQQHVVQTLKNAIRQERIAHAFLFSGPRGVGKTSIARILAKAINCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C C + G S + E+DG + +G+D +R + + + LP S R+KV+
Sbjct: 66 QGPAGTPCNVCTNCREITEGISMDVREIDGASNRGIDEIRELRERIRF-LP-VSCRYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP VVFIF TT+ VP +I SRCQ + F ++ I
Sbjct: 124 IIDEVHMLTREAFNALLKTLEEPPPHVVFIFATTETHKVPATILSRCQCFEFRRLSLRQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+LRKI+ E + + L IA DGS+RD+E++ DQ +S G I V EL+G
Sbjct: 184 AEQLRKIAETEKIRISDAGLAWIAEAGDGSMRDSESIFDQVISYAGTAIEDEAVEELLGR 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDP----MVLMSQLASLIMDIIAG 751
L +L E + D + ++ E +G+D +L+ +L++ I G
Sbjct: 244 TDRRFLFQLSEAVLRRDAGQCLRIVEEGYYAGLDMTYFYTLLLHHFRNLLLVKIVG 299
>gi|226226518|ref|YP_002760624.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca
T-27]
gi|226089709|dbj|BAH38154.1| DNA polymerase III gamma and tau subunit [Gemmatimonas aurantiaca
T-27]
Length = 598
Score = 202 bits (514), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 126/355 (35%), Positives = 197/355 (55%), Gaps = 22/355 (6%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++KY+P F + QN V +L I+RGR+A YL GPRGTGKT+ A++ + ALNC
Sbjct: 4 ALARKYRPRNFATVAVQNHVANTLKGAIARGRVAHGYLLCGPRGTGKTTLARVLAMALNC 63
Query: 520 VATD----QTKPCGYCRECNDFISG-KSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
Q +PCG+C C SG S + +E+D + +G+D R L+ + PS
Sbjct: 64 ERRGEPELQGEPCGHCGSCQRIWSGSASLDVVEIDAASNRGVDDARE-LRERAMYAPSGD 122
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPR---SIQSRCQKYL 631
R+KV+++DE H+L + W A LK LEEPP RVVF+F TT+ + + I SR Q++
Sbjct: 123 DRYKVYIVDEAHMLTREAWNALLKILEEPPPRVVFVFATTEPQKIAQQAAPILSRLQRFD 182
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RIT 689
+I +I RL + EE + E DAL +IA ADG LRDA ++ DQ+ LG+ +T
Sbjct: 183 LKRIGPAEIRERLAAVLTEEQVAFEADALGMIARAADGGLRDALSLTDQVLSLGESAAVT 242
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ V +G++ +++ L LL++ + + L D+GVD ++++S L L+ +
Sbjct: 243 ADRVQTALGLIPDDEYLALLDMVAERRAVDVFATVQRLADAGVDFVLVLSGLGDLLRAQL 302
Query: 750 AGTYTIGGRSLTEAEL-ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
A +GG EL ER++ AL E++ RL++ LL+L M+
Sbjct: 303 A--IALGG---VPPELPERMRAALD-----ERKQRLAANDLLRMLHALLELEPMY 347
>gi|314935108|ref|ZP_07842467.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
C87]
gi|313653038|gb|EFS16801.1| DNA polymerase III, gamma and tau subunits [Staphylococcus caprae
C87]
Length = 568
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/348 (31%), Positives = 189/348 (54%), Gaps = 6/348 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRMYRPQSFDDVVGQTHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +D +PC C C G + + +E+D + G+D +R I + PS S ++K
Sbjct: 64 CLNSDDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPSHAIFILATTEPHKIPPTIISRAQRFDFKAISMD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
IV RL+ ++ ++L + AL+ IA ++G +RDA +++DQ G +R+T +
Sbjct: 182 QIVDRLKFVAESQSLEYDNAALEFIAKTSEGGMRDALSIMDQAIAFGDERLTLQDALNVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTYT 754
G V E L +L + + + E R + G + L++ + + D I +
Sbjct: 242 GSVDEAALNDLFKDVVEGNVKEAFGRYHHFISEGKEVNRLINDMIYFVRDTIMIKTSNES 301
Query: 755 IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
I +L EL+ L + ++++ +R S + F L++L M
Sbjct: 302 IEYDALVSFELDTLYRMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEM 349
>gi|339448592|ref|ZP_08652148.1| DNA polymerase III subunits gamma and tau [Lactobacillus
fructivorans KCTC 3543]
Length = 592
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 193/360 (53%), Gaps = 21/360 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FDE++GQ ++ Q+L N + +I+ YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRTWRPQRFDEIVGQPVITQTLKNALITNQISHAYLFTGPRGTGKTSAAKILAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I A ++K
Sbjct: 64 CPNLKDGEPCNECATCLAINKGAFNDVIEIDAASNNGVEEIRNIRD--KAKYAPTEGKYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +IK
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPEHVIFILATTEPQKIPATIISRTQRFDFKRIKAS 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI+ R+ I +E+N++ + AL +IA +A+G +RDA ++LDQ LS ++T +
Sbjct: 182 DILKRMEYILSEKNIDYDDKALKVIAKSAEGGMRDALSILDQALSYSNDKVTYESALSVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V+ +KL +E +SD +K +E++D G D + L +I+ Y
Sbjct: 242 GSVTRDKLQSYIEAVFNSDVQTGLKMVQEILDDGKDANQFIEDLVDYCQNIL--LYHQDP 299
Query: 758 RSLTEAEL----------------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ ++EL E + ++++S+ + Q+R SS + ++L +
Sbjct: 300 EMVQKSELGLLGSNFKKIAGEIGSELIYQYVEIMSDVQNQMRYSSHPDVYLDILTVKLAN 359
>gi|402303617|ref|ZP_10822708.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC9]
gi|400378232|gb|EJP31093.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. FOBRC9]
Length = 618
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/325 (35%), Positives = 182/325 (56%), Gaps = 7/325 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R L+ P+ R K+
Sbjct: 65 AQGPTLTPCGQCESCRAIADGSSMDVFEIDAASNRGIDEIRD-LRETVKFAPTEG-RCKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRCQRYDFHRITVAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + DAL +IA ADG +RDA ++LDQ S L + +T+ V E +G
Sbjct: 183 IRERLSYVCRESGIAANDDALSIIAAQADGGMRDALSILDQCSALAEGTLTAEQVQESLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA----SLIMDIIAGTYT 754
+V +E++ +L D + + EL+ SG + + +LA +L++ + G
Sbjct: 243 LVGKERIAQLAVQIADKDGSGLLAGLSELLQSGRELNRIFVELALHFRALMIAGVGGASF 302
Query: 755 IGGRSLTEAELERLKHALKLLSEAE 779
S TEA E+L+ S+ E
Sbjct: 303 AAEFSGTEAAAEQLRADAARFSQPE 327
>gi|225387325|ref|ZP_03757089.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
DSM 15981]
gi|225046574|gb|EEG56820.1| hypothetical protein CLOSTASPAR_01077 [Clostridium asparagiforme
DSM 15981]
Length = 566
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 127/357 (35%), Positives = 187/357 (52%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +VQ+L N I+ GRI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPASFEDVKGQDPIVQTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C ISG S N +E+D + G++ +R I + P R++V
Sbjct: 65 ENPVNGSPCNECPACRAIISGSSMNVVEIDAASNNGVENIRDIRDQVQ--YPPTDGRYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRIALET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I LR+++ E++ VE AL +A ADGSLRDA ++LDQ GK +T V E++
Sbjct: 183 IAGHLRELTRAEHIEVEDRALTYVAKAADGSLRDALSLLDQCVAFHYGKLLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDT-------AETVKRARELMDSGVDPMVLMSQL--------A 742
G V EL + T E V + REL D + M L A
Sbjct: 243 GAVDASVFSELFGAIVEGRTRDCILKLEEIVIQGRELGQFVTDFIWYMRNLLLFQSADDA 302
Query: 743 SLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ +A+ E L +++ SE QLR +S++ L++L
Sbjct: 303 EGLLDMSTENLKQLEEDAKKADGETLMRYIRIFSELSNQLRYASQKRVIVEVALIKL 359
>gi|260432378|ref|ZP_05786349.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
gi|260416206|gb|EEX09465.1| DNA polymerase III subunits gamma and tau [Silicibacter
lacuscaerulensis ITI-1157]
Length = 584
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 12 LARKYRPETFADLVGQDAMVRTLKNAFEADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + +E+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGNGGPTTEPCGQCEHCVAIMEGRHVDVLEMDAASRTGVGDIREIID--SVRYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ LRKI+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 190 EPEVMIGLLRKIATAEGAEISDDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L+++ + D A + G DP+ ++ LA +
Sbjct: 250 AMLGLADRGRVLDLMDMILRGDAAGALTELGAQYAEGADPLAVLRDLAEI 299
>gi|375087786|ref|ZP_09734132.1| DNA polymerase III, subunit gamma and tau [Dolosigranulum pigrum
ATCC 51524]
gi|374564062|gb|EHR35366.1| DNA polymerase III, subunit gamma and tau [Dolosigranulum pigrum
ATCC 51524]
Length = 579
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 176/300 (58%), Gaps = 3/300 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FD+++GQ++VVQ+L N +++G + YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRVWRPQSFDDVLGQDVVVQTLKNAVAQGNTSHAYLFSGPRGTGKTSVAKILAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C + G + +E+D + G+D +R I + + P+ +P +K
Sbjct: 64 CPYAEDGQPCNECHLCTEITKGALGDVIEIDAASNNGVDEIRDI-REKAQYAPTQAP-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPPQ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPQNVIFILATTEPHKIPATIISRLQRFDFKRILPQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
I+ RL + + + + DAL +IA A+G +RDA ++LDQ LS + +++T ++
Sbjct: 182 VIIERLEHVLGADEITYDADALVVIANAAEGGMRDALSLLDQALSFMDEQLTVDDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G +++E+LL+ ++ T + E++ G DP + L+ D++ GG
Sbjct: 242 GSITQERLLDYIQQIADRQTEVALSILSEVLAEGKDPARFIEDTILLVRDMLLYQQNNGG 301
>gi|258513456|ref|YP_003189678.1| DNA polymerase III subunits gamma and tau [Desulfotomaculum
acetoxidans DSM 771]
gi|257777161|gb|ACV61055.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
acetoxidans DSM 771]
Length = 527
Score = 202 bits (514), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 121/373 (32%), Positives = 199/373 (53%), Gaps = 9/373 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L ++Y+P F E++GQ +V +L N + RIA YLF GPRGTGKTSTAKI + ALN
Sbjct: 4 RALYREYRPQLFAEIMGQRHIVDTLENALKNNRIAHAYLFCGPRGTGKTSTAKILAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + + +E+D + +G+D +R LK P+ ++K
Sbjct: 64 CHQIKGVEPCNKCSSCVSVAQGSAIDVIEIDAASNRGIDEIRD-LKERVKFAPTGG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L + + A LK LEEPP+ V+F+ TT+ +P +I SRCQ++ F I
Sbjct: 122 VYIVDEVHMLTIEAFNALLKTLEEPPEHVIFVLATTEPHKLPLTILSRCQRFDFKSIGAE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLVNEL 696
+ +RL+ I + + + P AL+LI A+G LRDA ++LDQ+ I+ ++ L
Sbjct: 182 PMTSRLKDILQDLQVKISPAALELIVQAAEGGLRDALSILDQIITFNNTAEISEEDIHNL 241
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY--- 753
+G V+E + LLE + D +++ E+ G D + + AS + D++ +
Sbjct: 242 LGTVNERVINSLLEYLLRGDAGSSLQVIAEIFLEGKDLKMFVKGFASCVRDLLLQSIEPT 301
Query: 754 TIGGRSLTEA--ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSG 811
I S T+ +E L L L+E E +++ SS+ L++ L QS
Sbjct: 302 AIKNFSRTDQIYSVEYLLALLDCLTELEPKMKFSSQPRVILELALIKFIYSRRDHLLQSI 361
Query: 812 SSRRQSSRTTEED 824
+++ + +D
Sbjct: 362 NTKESTEIQNNQD 374
>gi|402814600|ref|ZP_10864194.1| DNA polymerase III subunit gamma/tau [Paenibacillus alvei DSM 29]
gi|402508447|gb|EJW18968.1| DNA polymerase III subunit gamma/tau [Paenibacillus alvei DSM 29]
Length = 589
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 112/357 (31%), Positives = 185/357 (51%), Gaps = 17/357 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L + ++P F +++GQ ++Q+L N++ R + YLF GPRGTGKTS AKI + A+NC
Sbjct: 5 ALYRAWRPQSFQDMVGQQHIIQTLQNSLRERRFSHAYLFSGPRGTGKTSAAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C +G + +E+D + +G++ +R + + + R+KV
Sbjct: 65 EQGPSPEPCNACEACQRITAGAVMDVVEIDAASNRGVEEIRDLREKVKYA--PTEVRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ +P +I SRCQ++ F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPSHVMFILATTEPHRLPATIISRCQRFDFRRVSLAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
V RL ++ EEN+ + D+L IA +DG +RDA ++LDQ S IT V ++ G
Sbjct: 183 QVQRLAQVCKEENIQADHDSLTYIAKLSDGGMRDAISLLDQAASFTDGAITYQQVLDITG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ EE+ EL + D + +LM G M L D++ G
Sbjct: 243 GMPEERFAELARAVQAGDVGSVLSVVEQLMQEGKSADKCMESLLYFFRDLLMMKMVPSGD 302
Query: 759 SLTE--AELE------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+LT+ +E RL H + L+ + ++ + + T F LLQL +
Sbjct: 303 TLTDRLTRVESFRDLAEGFTESRLFHIIDTLNRYQTDMKFAVQPQTLFEVALLQLAA 359
>gi|384438407|ref|YP_005653131.1| DNA polymerase III holoenzyme tau subunit [Thermus sp. CCB_US3_UF1]
gi|359289540|gb|AEV15057.1| DNA polymerase III holoenzyme tau subunit [Thermus sp. CCB_US3_UF1]
Length = 539
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 115/323 (35%), Positives = 181/323 (56%), Gaps = 5/323 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++ +P+ F E++GQ V + L+ I GR+A YLF GPRG GKT+TA++ + A+ C
Sbjct: 3 ALYRRVRPLTFAEVVGQEHVKEPLLRAIGEGRLAQAYLFSGPRGVGKTTTARLLAMAVGC 62
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ KPCG C C G + +E+D + ++ VR + + + P ++PR KV
Sbjct: 63 --QGEEKPCGACPHCQAVQKGTHPDVVEIDAASNNSVEDVRELRERILLA-PLSAPR-KV 118
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F++DE H+L + A LK LEEPP V+FIF TT+ + +P +I SR Q Y F ++ + +
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEEPPAHVLFIFATTEPERMPPTILSRTQHYRFRRLTESE 178
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I A+LR+I E +AL L+A ADG++RDAE++LD+ LL +T + V +G+
Sbjct: 179 IAAKLRRILEGLGREAEEEALFLLARLADGAMRDAESLLDRFLLLPGPLTRAQVEAALGL 238
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+E L L E ++ AR L G P L+ L ++ + + + + GRS
Sbjct: 239 PPQEALFLLARRLAEGQVREALEEARRLYGQGFAPRSLVGGLMEVLREALYAAHGLPGRS 298
Query: 760 LTEAELERLKHALKLLSEAEKQL 782
L + E L AL L EA ++L
Sbjct: 299 LPLSPKE-LLFALSRLDEALERL 320
>gi|29347020|ref|NP_810523.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
VPI-5482]
gi|383125378|ref|ZP_09946020.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. 1_1_6]
gi|29338918|gb|AAO76717.1| DNA polymerase III subunit gamma/tau [Bacteroides thetaiotaomicron
VPI-5482]
gi|251837787|gb|EES65877.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. 1_1_6]
Length = 619
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 222/427 (51%), Gaps = 20/427 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTTDGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++A+EN+ EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSK 298
Query: 750 -AGTY-------TIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T +I R +A+ L+ L A+KL ++ + R S + TL+Q
Sbjct: 299 DAATLPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREP 857
+ + + D G +Q+ + P++ +++ V S Q A SPA+
Sbjct: 359 VAQLTTEGDDVSGGRGPKQTIKPVFTQPAA-AQQPQVASATSAQQTTVHTAPSPATAPSA 417
Query: 858 VNGNSRH 864
N R
Sbjct: 418 ANTAVRQ 424
>gi|290968136|ref|ZP_06559681.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp.
type_1 str. 28L]
gi|290781811|gb|EFD94394.1| DNA polymerase III, subunit gamma and tau [Megasphaera genomosp.
type_1 str. 28L]
Length = 565
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 172/281 (61%), Gaps = 3/281 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++GQ + ++L I ++A YLF GPRGTGKTSTAKIF+ A+NC
Sbjct: 5 ALYRKWRPKTFEDVVGQRQITETLQKAIIMDKVAHAYLFSGPRGTGKTSTAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + G+S + +E+D + + ++ +R L+ +P+ + K+
Sbjct: 65 EQGTKGHPCNTCEICRHIMRGESLDVVEIDAASNRSIEDIR-TLRETVKFMPAEGKK-KI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+ + +P +I SRCQ+Y F ++ D
Sbjct: 123 YIIDEVHMLTIEAFNALLKTLEEPPAHVIFILATTEPERIPITILSRCQRYEFRRLTSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRIT-SSLVNELVG 698
I ARL ++A+E+L++ DA ++A+ A+G +RDA +MLDQ G + + V ++G
Sbjct: 183 IAARLLYVAAQEHLSLAADAARVLAVKAEGGMRDALSMLDQCVGTGATVLDADTVRNILG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMS 739
++ E + + M +D E +++ E++ G +P +L++
Sbjct: 243 LIGMEWVFSFCRVLMDNDGREIIRKIDEIIHLGKEPTILLT 283
>gi|406991860|gb|EKE11309.1| hypothetical protein ACD_15C00108G0004 [uncultured bacterium]
Length = 550
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 166/287 (57%), Gaps = 3/287 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E+IGQ +VQ+L N I R+A YLF G RGTGKTS A+I + +NC
Sbjct: 4 TLYRKYRPKNFSEIIGQKHIVQTLSNAIKNNRVAHAYLFTGSRGTGKTSIARILAKTINC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ C C C +S + +E+D + G+D +R + + + LP + KV
Sbjct: 64 TDQKNSISCEKCSNCKVINDARSLDIIEIDAASNTGVDNIRELKE--TINLPPTQLKHKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVFI TT+I VP +I SRCQK+ F K+ +
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPAHVVFILATTEIHKVPATIVSRCQKFDFAKLPLEN 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ +L I+ +E + ++ ++L++IA+ A+G +RDAE++L Q +SL K IT V E++G
Sbjct: 182 IIEKLSGIAKKEKITIDAESLEMIAIAAEGGMRDAESLLGQVISLEDKNITIKEVEEILG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+ E+ +L + D + + R ++ G D + L + +
Sbjct: 242 TTDRKFSAEIADLIIKKDVTKAISRINNIVTDGYDLQIFAKSLTNYL 288
>gi|288959353|ref|YP_003449694.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
gi|288911661|dbj|BAI73150.1| DNA polymerase III subunit gamma/tau [Azospirillum sp. B510]
Length = 636
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 109/296 (36%), Positives = 174/296 (58%), Gaps = 8/296 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FDELIGQ+ +V++L N I GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 26 RVLARKYRPKTFDELIGQDALVRTLTNAIQSGRIAQAFMLTGVRGVGKTTTARIIARALN 85
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C D PCG C C + + ME+D + G+D +R I+ + SA
Sbjct: 86 CTGPDGNGGPTVSPCGVCDNCRAIAEDRHVDVMEMDAASHTGVDDIREIIDGVRYSPVSA 145
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K+++IDE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 146 --RYKLYIIDEVHMLSKSAFNALLKTLEEPPSHVKFVFATTEIRKVPVTVLSRCQRFDLR 203
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++ + +++A E ++E DA LIA ADGS+RD ++LDQ ++L +T+
Sbjct: 204 RVDAQVLKEHFTRVTALEGADIEGDAAALIARAADGSVRDGLSLLDQAIALAAGTVTAQQ 263
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
V +++G+ ++++L E A+S+ AE + +L G DP+V++ L L+ ++
Sbjct: 264 VRDMLGLADRTRVIDLFEAAVSARPAEAMDILADLHRVGADPVVILQDLLDLVHNL 319
>gi|395778714|ref|ZP_10459226.1| DNA polymerase III, subunit gamma and tau [Bartonella elizabethae
Re6043vi]
gi|423714972|ref|ZP_17689196.1| DNA polymerase III, subunit gamma and tau [Bartonella elizabethae
F9251]
gi|395417922|gb|EJF84259.1| DNA polymerase III, subunit gamma and tau [Bartonella elizabethae
Re6043vi]
gi|395430456|gb|EJF96498.1| DNA polymerase III, subunit gamma and tau [Bartonella elizabethae
F9251]
Length = 646
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N +GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYCR----ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTALESLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A LRKI+ E + VE A +I A+GS RDA ++ DQ ++ +T++ V
Sbjct: 189 IESKALSAHLRKIAKYEKVEVEDQAFSMIVRAAEGSARDALSIFDQAIAHSNGNVTATAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M D + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVHALHELRSQYDAGADPLTILTELADF 299
>gi|395791977|ref|ZP_10471416.1| DNA polymerase III, subunit gamma and tau [Bartonella vinsonii
subsp. arupensis Pm136co]
gi|423714028|ref|ZP_17688287.1| DNA polymerase III, subunit gamma and tau [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395421175|gb|EJF87431.1| DNA polymerase III, subunit gamma and tau [Bartonella vinsonii
subsp. arupensis OK-94-513]
gi|395432896|gb|EJF98870.1| DNA polymerase III, subunit gamma and tau [Bartonella vinsonii
subsp. arupensis Pm136co]
Length = 640
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDINQPTTLLNALGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
++ + A LR+I+ EN+ VE AL +IA A+GS+RDA ++ DQ ++ +++ V
Sbjct: 189 VESAVLSAHLRQIAKYENVEVEDQALSMIARAAEGSVRDALSIFDQAIAHSNGNVSAIAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGNVVDALHELRSQYDAGADPLTILTELADF 299
>gi|255527108|ref|ZP_05393996.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296187897|ref|ZP_06856290.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
gi|255509210|gb|EET85562.1| DNA polymerase III, subunits gamma and tau [Clostridium
carboxidivorans P7]
gi|296047518|gb|EFG86959.1| DNA polymerase III, subunit gamma and tau [Clostridium
carboxidivorans P7]
Length = 541
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 227/429 (52%), Gaps = 37/429 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P FD+++GQ + +L N I RIA YLF G RGTGKTSTAKI + A+NC
Sbjct: 5 ALYREWRPRIFDDVVGQKHITVTLKNQIRNNRIAHAYLFSGTRGTGKTSTAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C SG S + +E+D +K+ L+ ++ +++++ P ++KV
Sbjct: 65 TDLRDGEPCNECDMCKKINSGISIDVIEMDAASKRRLEDIKDVIENVK--YPPQEGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L ++ AFLK LEEPP V+FI TTD +P +I SRCQK+ F +IK D
Sbjct: 123 YIMDEVHMLTAEAVNAFLKTLEEPPSNVIFILATTDPQKLPVTILSRCQKFDFRRIKSSD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I R+R I E+ + + +L+LIA +DG++RDA ++LDQ +S+ G ++ V ++G
Sbjct: 183 IFGRMRDIVKEQGIFADDRSLNLIARMSDGAMRDALSILDQAISMGGGKVEYESVVSMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E +++L + + + E++K +++ SG D MV +S+
Sbjct: 243 LVTNENMIKLADSIIDKNVEESMKVIDDIVLSGKDIYNFIRDMITHLRNLLMVKVSKEPE 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
I+D+ + + + E + +++L +AE+Q + + + + ++++ +
Sbjct: 303 EILDMSEENIELLKEQSKKTKSEEIMRNIRILQDAEEQSKWTKQSRIYLELAVIKMCKIE 362
Query: 804 S--------------PDLTQSG----SSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845
+ + G S R +S+TT+ + + V K + P M
Sbjct: 363 YDTSKEVILARLNRLEEAIREGEIKVSYERNTSKTTKHEVKKNITKKDVVKEAAQP-VME 421
Query: 846 QNAVSPASL 854
QN S ++
Sbjct: 422 QNVYSKLTV 430
>gi|148655673|ref|YP_001275878.1| DNA polymerase III subunits gamma and tau [Roseiflexus sp. RS-1]
gi|148567783|gb|ABQ89928.1| DNA polymerase III, subunits gamma and tau [Roseiflexus sp. RS-1]
Length = 599
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/345 (33%), Positives = 185/345 (53%), Gaps = 17/345 (4%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+++L ++Y+ FDELIGQ VV++L N I+ GR+A YLF GPRG GKT+ A++ + A
Sbjct: 2 TVQALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC A +PCG C C G + + +E+D + ++ R I++ + A R
Sbjct: 62 VNCTAPPAERPCGVCESCRAIAEGHAVDVIEMDAASHTSVEDAREIIERVQ--FRPAVAR 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
KV++IDE H+L + + A LK LEEPP +FI TT++ VP +I SRCQ+++FN+
Sbjct: 120 TKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHT 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695
I A LR I+A+E + +E + IA A GS+RDA ++LDQL G I+ V
Sbjct: 180 VASIAAHLRSIAAQEGVTLEAGVAEAIARAATGSMRDALSVLDQLMAYGGGTISLEQVRN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD--------------PMVLMSQL 741
L+G +++ L + ++ D ++ + +G D M+L +
Sbjct: 240 LLGAGEMQEVTALADALIAGDLPGALQVIANVAAAGADLRQFTRDLVERLRAVMLLRAGA 299
Query: 742 ASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
++D+ R A+L L +KL SE + QLR+SS
Sbjct: 300 DRSLLDVAEEEAVQIERQAHSADLGALMRWVKLFSELDYQLRVSS 344
>gi|167999753|ref|XP_001752581.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696112|gb|EDQ82452.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 366
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 116/267 (43%), Positives = 163/267 (61%), Gaps = 15/267 (5%)
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+KV +++ C LL + W AFL LEEPP+ VVF+ TTD + +P + SRCQK+ F+K+
Sbjct: 9 RYKVIIVEGCDLLNTDIWNAFLTLLEEPPKDVVFVLNTTDAERIPATATSRCQKFHFSKV 68
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695
+ DIV RL ++ +E L+VE AL LIA +DGSLRDA +LDQ+ LL K ++ LV E
Sbjct: 69 SEADIVKRLEYLAEKEGLHVEAGALSLIAARSDGSLRDAVILLDQVCLLDKNVSVDLVRE 128
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G+ K L+LL+ A+S+DT TVK RE++ S V+P+ L+SQL LI DI+AG+ +
Sbjct: 129 VGGLPPVNKNLDLLDFALSADTINTVKTLREVLASSVEPLRLVSQLGGLITDILAGSLEV 188
Query: 756 --GGRS---------LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
G R + E RL+ ALK+LSEAE QLR + ++ TW TA LLQ +
Sbjct: 189 DRGSRKDGSFFNRNFSAKVEQHRLRQALKVLSEAELQLRGAGDKATWLTAALLQF----A 244
Query: 805 PDLTQSGSSRRQSSRTTEEDPSSTSRE 831
PD + S T PS+ + E
Sbjct: 245 PDRSFLPSEASTDVALTSARPSTKTSE 271
>gi|433461768|ref|ZP_20419370.1| DNA polymerase III subunit gamma/tau [Halobacillus sp. BAB-2008]
gi|432189663|gb|ELK46746.1| DNA polymerase III subunit gamma/tau [Halobacillus sp. BAB-2008]
Length = 574
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 172/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F+ ++GQ + ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVWRPRNFEGVVGQEHITRTLQNAIEQNKFSHAYLFSGPRGTGKTSAAKIFAQAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++++R I + PSA P +K
Sbjct: 64 CERAPVKEPCNECDACLGIQDGSISDVIEIDAASNNGVEQIREIRDKVKYA-PSAVP-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPKHVLFILATTEPHKIPLTIISRCQRFDFKRISQK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V R+ KI+A EN+ +E +AL+++AL A+G +RDA ++LDQ +S + +T V +
Sbjct: 182 AMVGRMEKITAAENITIEKEALEIVALTAEGGMRDALSLLDQAVSYSDEEVTIDDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ KL ++ + D ++ +L+ G DP + L + D++
Sbjct: 242 GSVSQAKLTNVIRALLDQDAKAALEAVDDLIQQGKDPGRFVFDLIYYLRDLL 293
>gi|84500405|ref|ZP_00998654.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
gi|84391358|gb|EAQ03690.1| DNA polymerase III subunits gamma and tau [Oceanicola batsensis
HTCC2597]
Length = 581
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 11 LARKYRPETFADLVGQDAMVRTLRNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 70
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D + ++ +R I+ S +AS
Sbjct: 71 GPDGQGGPTTDPCGKCEHCVAIMEGRHVDVMEMDAASNTSVNDIREIID--SVHYRAASA 128
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 129 RYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 188
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 189 EPEVMIDLLREIADREGAEIADDALALITRAAEGSARDATSLLDQAISHGAGETTADQVR 248
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E+ M D A + G DP+ ++ LA +
Sbjct: 249 AMLGLADRGRVMDLFEMVMRGDAAAALTELSAQYADGADPLAVLRDLAEI 298
>gi|148266337|ref|YP_001233043.1| DNA polymerase III subunits gamma and tau [Geobacter uraniireducens
Rf4]
gi|146399837|gb|ABQ28470.1| DNA polymerase III, tau subunit [Geobacter uraniireducens Rf4]
Length = 579
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 130/358 (36%), Positives = 197/358 (55%), Gaps = 18/358 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +LIGQ V ++L N I GR+A +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLIGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T+PC C C + G S + E+DG + G+D +R + ++ LPS S R+K+F
Sbjct: 66 QGLTTEPCNTCPSCTEITDGNSVDVFEIDGASNTGVDDIRELRDNVKY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKVPITILSRCQRFDFKRIALQKI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RLR I +E ++V AL ++A DGS+RD+ + LDQ L+ G+ +T V L+GV
Sbjct: 184 VDRLRYIVDQEQVSVSDKALAVVARKGDGSMRDSLSTLDQVLAFCGQTVTDEDVAGLLGV 243
Query: 700 VSEEKLLELLELAMSSDT---AETVKRA-----------RELMDSGVDPMVLMSQL-ASL 744
V LLE + + D+ E VKR +EL+D + +L + + A+
Sbjct: 244 VDRRLLLEASQSIFARDSRAALEIVKRVDSFGYNMRQFCQELIDHFRNITILRTVVDAAD 303
Query: 745 IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
I+D+ G + L+ L +L +AE ++ S+ LL++ S+
Sbjct: 304 ILDLSEGEIAELKTQASATPPADLQRHLSILLKAEGEMAHSTFPRLVLEMALLKMASL 361
>gi|158421766|ref|YP_001523058.1| ATPase [Azorhizobium caulinodans ORS 571]
gi|158328655|dbj|BAF86140.1| ATPase [Azorhizobium caulinodans ORS 571]
Length = 613
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/294 (36%), Positives = 178/294 (60%), Gaps = 11/294 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GRIA Y+ G RG GKT+TA+I + ALN
Sbjct: 29 RVLARKYRPQNFDDLIGQEAMVRTLSNAFASGRIAQAYILTGVRGVGKTTTARILARALN 88
Query: 519 CVATDQTKPCG-------YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
D + P G + + C D I + + ME+D + ++ +R I++ S P
Sbjct: 89 YEPMDGS-PGGPSLDLSVFGKHCKDIIESRHVDVMEMDAASNTSINDIREIIEG-SRYRP 146
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
+ R+KV++IDE H+L + + LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 147 VMA-RYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFD 205
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITS 690
+++ G + A L +I A+EN++V+ +AL ++A A+GS+RD+ ++LDQ ++ G +T
Sbjct: 206 LRRVEAGVLAAHLSRICAKENVSVDAEALSIVARAAEGSVRDSLSLLDQAIAHGGGAVTG 265
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V L+G+ + ++++L + M D + R+ DSG DP V+++ LA
Sbjct: 266 EEVRRLLGLADKARVIDLFDALMKGDMPRALAEFRDQYDSGADPAVILTDLAEF 319
>gi|94969002|ref|YP_591050.1| DNA polymerase III subunits gamma and tau [Candidatus Koribacter
versatilis Ellin345]
gi|94551052|gb|ABF40976.1| DNA polymerase III, tau subunit [Candidatus Koribacter versatilis
Ellin345]
Length = 632
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 174/283 (61%), Gaps = 5/283 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E+IGQ+ V ++L N I + RIA Y+F G RG GKT+ A+I + ALNC
Sbjct: 6 LARKYRPQKFSEVIGQDHVTRTLKNAIEQQRIAHGYIFSGHRGIGKTTIARILAMALNCQ 65
Query: 521 ATDQ--TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+ D ++PCG C C + +G+S + +E+D +G+D +R + + +A A RFK
Sbjct: 66 SADHPVSEPCGVCDSCKEVKAGQSVDVIEIDAATNRGIDEIRELRE--AARYRPARDRFK 123
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++++DE H + + A LK LEEPP +VF+ TT+ +++P++I+SRCQ + F+ +K
Sbjct: 124 IYILDEAHQITDAAFNALLKTLEEPPGHIVFMMATTEPEDIPQTIRSRCQHFSFHAVKFD 183
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV +LR I+ +E + E DAL ++A DGS+RDA +++DQ ++ G ++ + V L+
Sbjct: 184 DIVLQLRDIAGKEGIGAEDDALAMLAEAGDGSMRDALSIMDQAIAACGNQLKTDDVRGLM 243
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ 740
G VS + L +++ ++ + + +L+ G P+ Q
Sbjct: 244 GTVSSDVLEDIMNGVHANSSESVLTTIDKLLIEGHSPLHFAKQ 286
>gi|357419590|ref|YP_004932582.1| DNA polymerase III subunits gamma and tau [Thermovirga lienii DSM
17291]
gi|355397056|gb|AER66485.1| DNA polymerase III, subunits gamma and tau [Thermovirga lienii DSM
17291]
Length = 577
Score = 202 bits (513), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 134/389 (34%), Positives = 211/389 (54%), Gaps = 26/389 (6%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQN VVQ + N I G++ +LF GPRG+GKT+ A++ + ALNC
Sbjct: 5 TLYRKYRPKSFSQVVGQNAVVQVVKNKILSGKVPHAFLFSGPRGSGKTTVARLLAKALNC 64
Query: 520 V-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
+++ +PCG C C G S + +E+DG + +G+D +R + +H+S P +SP +K
Sbjct: 65 SNLSNEGEPCGECSSCKAITEGSSLDVIEIDGASHRGIDNIRELKEHVSLA-PFSSP-YK 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ + + A LK LEEPP VVF+ TT+ VP +I+SRCQ F++IK G
Sbjct: 123 VYIIDEVHMVTTDGFNALLKTLEEPPSYVVFVLATTEPKKVPVTIRSRCQHVPFHRIKSG 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLG--KRITSSLVNE 695
DIV L+ + E + + DAL IA ADGSLRDA ++L+Q L+ G K + VN
Sbjct: 183 DIVNCLKNVLLLEGCDADDDALWEIAREADGSLRDALSILEQALAFAGEDKVLRLDAVNS 242
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
++G S K +E L + + +D E ++L+ +G+ L L L D+ + +
Sbjct: 243 MLGGGS-RKDMERLMVKLRTDKKEAFYFLQQLLSAGLTSKRLFEGLYELARDL----WVL 297
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRR 815
G + AL +S+ EK L E W T+ L + ++ ++ R
Sbjct: 298 GKWG------SNCEDALP-ISQEEKDF-LKEEMVFWETSDLWNIMKFCVDNIARANLGVR 349
Query: 816 QSSRTT-------EEDPSSTSREAVVYKR 837
+ E P+ T REAV R
Sbjct: 350 SDVAASLVLGFFEELKPAQTPREAVPKSR 378
>gi|359404867|ref|ZP_09197676.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
gi|357559896|gb|EHJ41321.1| DNA polymerase III, subunit gamma and tau [Prevotella stercorea DSM
18206]
Length = 587
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 117/372 (31%), Positives = 202/372 (54%), Gaps = 19/372 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC+
Sbjct: 8 ARKYRPMTFDSVVGQAALTATLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCMN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + + CG C C F G+S N E+D + ++ ++ +++ +P ++KVF
Sbjct: 68 PTTEGEACGECESCKAFAEGRSYNIFELDAASNNSVEHIKSLMEQ--TRIPPQVGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + AFLK LEEPP VVFI TT+ + +I SRCQ Y F ++ +
Sbjct: 126 IIDEVHMLSQAAFNAFLKTLEEPPAHVVFILATTEKHKILPTILSRCQIYDFERMSVENT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ L+ ++ +E + E +AL LIA ADG +RDA ++ DQ S IT + V E +
Sbjct: 186 INHLKYVAEKEGITYEEEALALIAEKADGGMRDALSIFDQTASFCQGNITYAKVIEDLNE 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + + ++ A+++ +E + +++ G D L++ LAS + +++ +
Sbjct: 246 LDTDNYFKFVDYALANKVSECMVLLNAIIEKGFDGGNLINGLASHVRNVLMAKDAQTLKL 305
Query: 760 LTEAELERLKH--------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L +E +R K+ ALKL+++ + R SS + TL+Q+ + P
Sbjct: 306 LEVSEKQREKYSAQAKACPTQFLYKALKLMNQCDLSYRQSSNKRLLVELTLIQVAQITQP 365
Query: 806 -DLTQSGSSRRQ 816
D +G S +Q
Sbjct: 366 EDADSAGRSPKQ 377
>gi|153808560|ref|ZP_01961228.1| hypothetical protein BACCAC_02855 [Bacteroides caccae ATCC 43185]
gi|423219389|ref|ZP_17205885.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
gi|149128882|gb|EDM20099.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae ATCC
43185]
gi|392625439|gb|EIY19505.1| DNA polymerase III, subunit gamma and tau [Bacteroides caccae
CL03T12C61]
Length = 618
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 135/459 (29%), Positives = 238/459 (51%), Gaps = 22/459 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E ++ EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGISAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + +++ ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLANKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYKAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREP 857
+ + + D G S +Q+ + P++ V S Q P ++ SPAS+
Sbjct: 359 VAQLTTEGDDVSGGRSPKQTIKPVFSQPAAAQPSQVA--SASSVQQAPVHS-SPASVTAN 415
Query: 858 VNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQ 896
V N + +R ++ + S + L AG +V++
Sbjct: 416 VTPNRQPQMATTARPVSPSATNTTSSAPLPGAGIPSVAK 454
>gi|403530137|ref|YP_006664666.1| DNA polymerase III subunits gamma and tau [Bartonella quintana
RM-11]
gi|403232209|gb|AFR25952.1| DNA polymerase III subunits gamma and tau [Bartonella quintana
RM-11]
Length = 640
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/291 (36%), Positives = 169/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQETMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSAQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A L +I+ EN+ VE AL +IA A+GS RDA ++ DQ ++ I++ V
Sbjct: 189 IETAILSAHLCQIAKHENIKVEDQALSMIARAAEGSARDALSIFDQAIAYSNGNISAVAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+V + ++++L E M D + R D+G DP+ ++++LA
Sbjct: 249 RAMLGLVDQARIIDLFEFIMKGDIVNALHELRSQYDAGADPLTILTELADF 299
>gi|313673332|ref|YP_004051443.1| DNA polymerase III subunits gamma/tau [Calditerrivibrio
nitroreducens DSM 19672]
gi|312940088|gb|ADR19280.1| DNA polymerase III, subunits gamma and tau [Calditerrivibrio
nitroreducens DSM 19672]
Length = 529
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 191/326 (58%), Gaps = 9/326 (2%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++ ++L++KY+P FDE++GQ VV++L N I GRI+ YLF GPRG GKT+ A++F+
Sbjct: 1 MQRYKALARKYRPQNFDEIVGQEFVVKTLKNAIELGRISHAYLFTGPRGIGKTTAARVFA 60
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
A+NC+ PC C C + +G S + +E+DG + + ++ R I +++ LP +
Sbjct: 61 KAVNCLNPIGVNPCNQCSNCMEINNGTSVDVIEIDGASNRKVEEARNIRENVRI-LP-IN 118
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++KV++IDE H+L + + A LK LEEPP V+FI TTD +P +I SRCQKY F K
Sbjct: 119 NKYKVYIIDEVHMLTEEAFNALLKTLEEPPDYVIFILATTDAHKIPMTILSRCQKYDFKK 178
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLV 693
I + + L I +E ++ + D+L+LI N+DG +RDA +++DQL + G IT
Sbjct: 179 IPNNYMRNYLLSIMEKEGISCDNDSLNLIIRNSDGCMRDALSLIDQLVAFTGGNITYENT 238
Query: 694 NELVGVVSEEKLL-ELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG- 751
+E++ +SE+KL ++ E ++ DT E G+D + +++ G
Sbjct: 239 SEILD-LSEQKLANDIFEGIINGDTNNLFDLIDEFSRKGIDYQFALETFIVHTRNLLHGL 297
Query: 752 TYTIGGRSLTEAEL---ERLKHALKL 774
T ++LT+ E+ ERLK L L
Sbjct: 298 TGGFSDKTLTKDEIDFYERLKPKLNL 323
>gi|83594802|ref|YP_428554.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
ATCC 11170]
gi|386351567|ref|YP_006049815.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
F11]
gi|83577716|gb|ABC24267.1| DNA-directed DNA polymerase [Rhodospirillum rubrum ATCC 11170]
gi|346720003|gb|AEO50018.1| DNA polymerase III subunits gamma and tau [Rhodospirillum rubrum
F11]
Length = 659
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 167/293 (56%), Gaps = 8/293 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD LIGQ +V++L N I GR+A ++ G RG GKT+TA++ + ALN
Sbjct: 39 RVLARKYRPASFDALIGQEALVRTLTNAIDSGRLAQAWMLTGVRGVGKTTTARLIARALN 98
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C + + +E+D ++ G+ +R IL + A
Sbjct: 99 CVGADGKGGVTITPCGVCEHCKAIAEDRHVDVLEMDAASRTGVGDIREILDGVR--YRPA 156
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KV++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 157 VARTKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLR 216
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++ ++ +I+ E + P AL LIA ADGS+RD ++LDQ ++ G ++ +
Sbjct: 217 RVSAAELSGHFLRIAGLEGAEIAPSALTLIARAADGSVRDGLSLLDQAIAHGGGTVSEAQ 276
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
V E++G+ ++ +LL+ ++ AE++ G DP+V++ L L+
Sbjct: 277 VAEMLGLADRARIFDLLDALLAGRIAESLDLLDRQYALGADPLVIVQDLLDLV 329
>gi|224536875|ref|ZP_03677414.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
DSM 14838]
gi|224521499|gb|EEF90604.1| hypothetical protein BACCELL_01751 [Bacteroides cellulosilyticus
DSM 14838]
Length = 615
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 200/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G I+
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + +++ ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLANQVSDALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R ++A+ L L A+KL ++ ++ R S + TL+Q
Sbjct: 299 DPATLALLEVGASIRERYQSQAQKCPLPFLYRAMKLCNDCDQNYRASKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|315283987|ref|ZP_07871985.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
gi|313612362|gb|EFR86506.1| DNA polymerase III subunit gamma/tau [Listeria marthii FSL S4-120]
Length = 579
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 119/370 (32%), Positives = 200/370 (54%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ARL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIARLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNAAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|222053486|ref|YP_002535848.1| DNA polymerase III subunits gamma and tau [Geobacter daltonii
FRC-32]
gi|221562775|gb|ACM18747.1| DNA polymerase III, subunits gamma and tau [Geobacter daltonii
FRC-32]
Length = 576
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 109/268 (40%), Positives = 162/268 (60%), Gaps = 3/268 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +LIGQ V ++L N I GRIA +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLIGQEHVSRTLQNAIDTGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T+PC C C++ G S + E+DG + G+D +R + ++ LPS S R+K+F
Sbjct: 66 HGLTTEPCNSCPSCSEITDGNSVDVFEIDGASNTGVDDIRELRDNVKY-LPSKS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ +P +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLTNNAFNALLKTLEEPPAHVKFIFATTEPHKLPITILSRCQRFDFKRIPLQKI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RLR I +E +++ DAL ++A DGS+RD+ + LDQ L+ G+ + V L+GV
Sbjct: 184 VDRLRYIVDQEKVSISSDALAIVARKGDGSMRDSLSTLDQVLAFCGENVADDDVASLLGV 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL 727
V LLE + S D ++ +++
Sbjct: 244 VDRRLLLEASQAVFSRDNKSVLEIVKQV 271
>gi|392423473|ref|YP_006464467.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus
acidiphilus SJ4]
gi|391353436|gb|AFM39135.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus
acidiphilus SJ4]
Length = 563
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 195/357 (54%), Gaps = 18/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F ++GQ + ++L+N + + +IA YLF GPRGTGKT+ AKI + ALNC
Sbjct: 5 ALYREWRPKTFQNIVGQEHITRTLMNALKQNKIAHAYLFSGPRGTGKTTAAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C G + E+D + +G+D +R + +++ L S RFKV
Sbjct: 65 EQRIDVEPCNQCSSCLSIDHGSAIEVFEIDAASNRGIDEIRDLRENIK--LSSIEGRFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP +VVFI TT++ +P +I SR Q++ F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRISVEN 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I +RL + N+ P AL +IA ++G LRDA ++LDQ L I V +++G+
Sbjct: 183 ISSRLTLVCESLGRNILPGALQVIAQKSEGGLRDALSILDQCLLQDDPIGVKEVYQVLGM 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V E EL+E M+ D +++ + + G DP ++ +L + ++ T G
Sbjct: 243 VGETFSSELVESLMTLDYGKSLAILTDGIQQGRDPRQIIRELLDYLRQMLLNVTT-GAAP 301
Query: 760 LTEAELE-------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
L E++ RL H + LL + E QL+ +S A LL + ++H
Sbjct: 302 LVAPEIQERLVKQSEQVPISRLLHWISLLMQGEGQLKYASN--ARLAAELLIVQTIH 356
>gi|329114766|ref|ZP_08243523.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
gi|326695897|gb|EGE47581.1| DNA polymerase III subunit Tau [Acetobacter pomorum DM001]
Length = 712
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 172/302 (56%), Gaps = 14/302 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 98 RVLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 157
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C ++ + + +E+D ++ G+D VR I+ +
Sbjct: 158 CIGPDGKGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREIID--ATRFRPM 215
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ++
Sbjct: 216 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVLSRCQRFDLR 275
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK------- 686
++ ++V +I+ +E++ + PDAL L+A ADGS+RD ++LDQ G
Sbjct: 276 RVPQSELVGLFSRIADKEHVRLSPDALALVARAADGSVRDGLSLLDQAIAQGTGQTDADG 335
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
I ++++++++G+ E + +LLE ++ + + G DP +++ + L+
Sbjct: 336 VIGATVISDMLGLADREVVFDLLEAVLTGKPEQALALLDAAYARGADPGLVLGDMLELVH 395
Query: 747 DI 748
+
Sbjct: 396 TV 397
>gi|344997093|ref|YP_004799436.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965312|gb|AEM74459.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
lactoaceticus 6A]
Length = 536
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 196/364 (53%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 6 ALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 65
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 66 LNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSMCKKKV 123
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 124 YIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQRFDFKRISVKD 183
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 184 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEHITYKFVANLLG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ A +G +
Sbjct: 244 VTSTEIVKEFIASIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLRS--ALILRLGAK 301
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ LE RL +K+L + Q+R T F LL++ ++
Sbjct: 302 DVLVDMLESDKDFVMNISNLIDSNRLVSIIKMLIDTANQVRW-----TRFPKVLLEINTI 356
Query: 803 HSPD 806
D
Sbjct: 357 KLCD 360
>gi|313895047|ref|ZP_07828604.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 137 str. F0430]
gi|312975942|gb|EFR41400.1| DNA polymerase III, subunit gamma and tau [Selenomonas sp. oral
taxon 137 str. F0430]
Length = 617
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 183/323 (56%), Gaps = 8/323 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R L+ P+ R K+
Sbjct: 65 AQGPTLTPCGQCESCRAIADGSSMDVFEIDAASNRGIDEIRD-LRETVKFAPTEG-RCKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRCQRYDFHRITVAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + DAL +IA ADG +RDA ++LDQ S L + +T+ V E +G
Sbjct: 183 IRERLSYVCRESGIAANDDALSIIAAQADGGMRDALSILDQCSALAEGTLTAEQVQEALG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA-SLIMDIIAGTYTIGG 757
+V +E++ L D + + EL+ SG + + +LA +IAG +GG
Sbjct: 243 LVGKERIARLAVQIADKDGSGLLAGLSELLQSGRELNRIFVELALHFRALMIAG---VGG 299
Query: 758 RSLTEAELERLKHALKLLSEAEK 780
S T AE + A +L ++A +
Sbjct: 300 ASFT-AEFSGTEAAEQLRADAAR 321
>gi|51891151|ref|YP_073842.1| DNA polymerase III subunits gamma and tau [Symbiobacterium
thermophilum IAM 14863]
gi|51854840|dbj|BAD38998.1| DNA polymerase III gamma and tau subunits [Symbiobacterium
thermophilum IAM 14863]
Length = 570
Score = 201 bits (512), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 142/500 (28%), Positives = 238/500 (47%), Gaps = 40/500 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++Y+P F E++GQ + ++L N I +GR+ YL GPRGTGKT+ A+I + A+NC
Sbjct: 5 ALYREYRPQRFGEVVGQEHITRTLRNAIVQGRLHHAYLLSGPRGTGKTTVARILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C SG++ + +E+D + +G+D +R + ++ ++KV
Sbjct: 65 LNPQDGEPCNECEACRRITSGEALDLIEIDAASNRGIDEIRDLRDKVN--FAPVELKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+F+ TT+ +P +I SRCQ + + ++ +
Sbjct: 123 YIIDEVHMLTEPAFNALLKTLEEPPAHVLFVLATTEKQKLPITILSRCQAFDYRRLSADE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLVNELV 697
IVARLR++ ++ L P+AL IA +ADG +RDA ++LDQ+ IT + ++
Sbjct: 183 IVARLREVCGKQGLKASPEALAAIARHADGGMRDALSLLDQVMAYAAEGEITLDMTLAVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G ++ L L + D + E++ +G D L+ + + D++ AG
Sbjct: 243 GTAPLDQFLALDGHLLRGDVGAALLWLDEMVRAGKDLRQLVRDYLAHLRDLLLVKLEAGA 302
Query: 753 YTIG--------GRSLTEAELER-LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+G R+ E ER L A++LL +AE +LRLS L++L +
Sbjct: 303 QVLGLPAEALEQMRARAEPFAERQLIRAIRLLGQAETELRLSPSPRLLVEVALIRLTGLF 362
Query: 804 SPDLTQSGS-----------SRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQ--NAVS 850
+ G SRR+ E P S+ G P A +
Sbjct: 363 TGAAADEGEDDGTAAEAAAPSRRRRQEHGEVRPQGASQATAPGPAGPGDPGEPAGGQATT 422
Query: 851 PASLREPVNGNSRHLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQNGNIVGNTIITCRN 910
P S PV + E ++ G ++ S L A + G + GN + N
Sbjct: 423 P-SAPAPVGAGVDRVVEAWEQVLGLVRKARTSTYHLLSTTA----RIGGLRGNRLFLVAN 477
Query: 911 SEKLGEIWAQCIERCHSKTL 930
S +++AQ + R K +
Sbjct: 478 S----QVFAQLLRRPEDKRI 493
>gi|348025724|ref|YP_004765529.1| DNA polymerase III [Megasphaera elsdenii DSM 20460]
gi|341821778|emb|CCC72702.1| DNA polymerase III [Megasphaera elsdenii DSM 20460]
Length = 639
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/287 (35%), Positives = 174/287 (60%), Gaps = 4/287 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++GQ+ + ++L I ++A YLF GPRGTGKTSTAKIF+ A+NC
Sbjct: 5 ALYRKWRPKDFEDVVGQSHITETLQKAIDTDKVAHAYLFSGPRGTGKTSTAKIFARAMNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V + PC C C +SG+S + +E+D + + ++ +R L+ +P+ + K+
Sbjct: 65 VHGPTSHPCNECEVCRHIMSGESLDVVEIDAASNRSIEDIR-TLRETIKFMPAEGHK-KI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ + +P +I SRCQ+Y F +I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVIFILATTEPERIPMTILSRCQRYEFRRITSED 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL ++ +E +++ A ++A+ ADG +RDA +MLDQ +S I +V +L+G
Sbjct: 183 IAKRLLYVAGQEQIDLTKGAAHILAVQADGGMRDALSMLDQCVSNTSGTIDEGVVRDLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP-MVLMSQLASL 744
++ ++ L L + +K +++ G +P ++LM LA L
Sbjct: 243 LIGKDWLFSLAQAIFDGQGDVIIKAVDDVIHMGKEPRVILMELLAHL 289
>gi|312792713|ref|YP_004025636.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179853|gb|ADQ40023.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 534
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 196/364 (53%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQEHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 64 LNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSMCKKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ A +G +
Sbjct: 242 VTSTEIVKEFIASIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLRS--ALILRLGAK 299
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ LE RL +K+L + Q+R T F LL++ ++
Sbjct: 300 DVLVDMLESDKDFVMNISNLVDSNRLVSIIKMLIDTANQVRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|18309027|ref|NP_560961.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
str. 13]
gi|168213992|ref|ZP_02639617.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
CPE str. F4969]
gi|18143702|dbj|BAB79751.1| DNA polymerase III gamma and tau subunits [Clostridium perfringens
str. 13]
gi|170714512|gb|EDT26694.1| DNA polymerase III, gamma and tau subunit [Clostridium perfringens
CPE str. F4969]
Length = 547
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 227/442 (51%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D++R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDKIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGSKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EA K ++ Q QNA+
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEASNNKTLNNKQ---QNAIK 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|410669194|ref|YP_006921565.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
gi|409106941|gb|AFV13066.1| DNA polymerase III subunit gamma/tau [Thermacetogenium phaeum DSM
12270]
Length = 626
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 163/291 (56%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F ++IGQ V ++L N + GRIA YLF GPRGTGKTSTA+I + ALNC
Sbjct: 5 ALYREWRPQLFRDVIGQEHVSRTLKNAVVLGRIAHAYLFCGPRGTGKTSTARILARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C C +G S N +E+D + +G++ +R + + + G+ R+KV
Sbjct: 65 TDLQNGEPCNRCPSCRSISAGISLNVIEMDAASHRGIEEIRELRQKV--GMAPGGGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VFI TT+ VP +I SRCQ++ F ++
Sbjct: 123 YIIDEVHMLTGEAFNALLKTLEEPPAHAVFILATTEAQKVPLTILSRCQRFDFRRLDRSL 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I L +I+ E+ E ALDLI+ A G+LRDA +LDQ S G RI V L G
Sbjct: 183 IKGHLARIAREKGWEAEDAALDLISRQAGGALRDALGLLDQAASFAGGRIRLEDVEMLTG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+E L L+ D +++ L G +P + QLA + D++
Sbjct: 243 APRQEVLDGLIAAVAGGDVPALMEQLDGLFARGYEPRRALLQLADRLRDLL 293
>gi|225163994|ref|ZP_03726282.1| DNA-directed DNA polymerase [Diplosphaera colitermitum TAV2]
gi|224801408|gb|EEG19716.1| DNA-directed DNA polymerase [Diplosphaera colitermitum TAV2]
Length = 388
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 196/346 (56%), Gaps = 13/346 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P FD+++GQ+ VV++L N I+R RIA YLF GPRGTGKTSTA+IF+ ALNC
Sbjct: 9 IARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCT 68
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ G S + +E+DG + +D++R + + P+ +FK++
Sbjct: 69 DGPKADFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRDLRDDVRYA-PTQG-KFKIY 126
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ V F+F TTD+ V +I SRCQ++ I D I
Sbjct: 127 IIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDDLI 186
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ RL +I A+E +N P+AL IA ADG +RDA+++ DQ+ S G I + V ++ G+
Sbjct: 187 IKRLAQIGADEKINATPEALACIARMADGGMRDAQSIFDQMISFCGAEIAEADVLDVYGL 246
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI----MDIIAG---T 752
VS E++ L + + E V+ + +G D + L+ L + I +D IA T
Sbjct: 247 VSTEQIAALAGAIAAGNHKELVRIIDDCDANGRDLVRLLHDLQASIRAALLDAIANNGRT 306
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+G +T ++ RL AL+ E E ++L F TLL+
Sbjct: 307 TLLGNVPMTTEQVTRLLDALR---EGEGSVKLGLSDKINFEVTLLK 349
>gi|345880805|ref|ZP_08832345.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
gi|343921844|gb|EGV32554.1| hypothetical protein HMPREF9431_01009 [Prevotella oulorum F0390]
Length = 600
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/361 (32%), Positives = 196/361 (54%), Gaps = 18/361 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-V 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDAVVGQESLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCET 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T+ + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTEAGEACNVCESCKAFNEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
VA L++++A+EN+ E +AL +IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 VAHLKQVAAKENVAFEEEALAVIAEKADGGMRDALSIFDQTASFCQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI 755
+ E ++L+ A+ + + + ++ G D ++ LA I +++ A T +
Sbjct: 246 LDAENYFKVLDYALENKVTDVMVLLNNVLRKGFDGGHFINGLAQHIRNVLMAHDAATLPL 305
Query: 756 GGRS----------LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
S + ++ L ALKLL++ + + SS + TL+Q+ +
Sbjct: 306 LEVSQQQQTKYQQQAQKCPVKFLYRALKLLNQCDVNYKQSSNKRLLVELTLIQMAQITQD 365
Query: 806 D 806
D
Sbjct: 366 D 366
>gi|312621630|ref|YP_004023243.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202097|gb|ADQ45424.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
kronotskyensis 2002]
Length = 534
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 197/364 (54%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 64 LNPKDGNPCNECEICRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSVCKKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP+ +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPEHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ A +G +
Sbjct: 242 VTSTEIVKEYIAAIVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLRS--ALILRLGAK 299
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ LE RL +K+L + Q+R T F LL++ ++
Sbjct: 300 DVLVDMLESDKDFVINISNLVDSNRLVSIIKMLIDTANQIRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|126731114|ref|ZP_01746922.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
gi|126708416|gb|EBA07474.1| DNA polymerase III subunits gamma and tau [Sagittula stellata E-37]
Length = 587
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NC+
Sbjct: 10 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCI 69
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T PCG C C + G+ + ME+D ++ G+ +R I++ S +AS
Sbjct: 70 GPDGNGGPTTDPCGKCEHCVAIMEGRHVDVMEMDAASRTGVGDIREIIE--SVHYRAASA 127
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 128 RYKIYIIDEVHMLSKSAFNALLKTLEEPPAHVKFIFATTEIRQVPVTVLSRCQRFDLRRI 187
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LRKI+ E + +AL L+ A+GS RDA ++LDQ +S T+ V
Sbjct: 188 EPEIMIALLRKIATSEAAEITDEALALVTRAAEGSARDATSLLDQAISHGAGETTADQVR 247
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++L E M D A ++ G DP+ ++ LA L
Sbjct: 248 AMLGLADRGRTMDLFERIMRGDAAGALEELAAQYADGADPLAVLRDLAEL 297
>gi|226325913|ref|ZP_03801431.1| hypothetical protein COPCOM_03726 [Coprococcus comes ATCC 27758]
gi|225205455|gb|EEG87809.1| DNA polymerase III, subunit gamma and tau [Coprococcus comes ATCC
27758]
Length = 522
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 198/361 (54%), Gaps = 27/361 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ ++ +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPAEFEDVKGQDHIITTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C + +G S N +E+D + G+D +R I + +S P+ R+KV
Sbjct: 65 EHPVDGSPCGECTMCKNIAAGTSMNVIEIDAASNNGVDNIREIREEVSYR-PTEG-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I ARL ++ +E + VE A+ IA ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 IAARLDELMKKEQVEVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V + LL +S D + + EL+ G + ++QLA+ L++
Sbjct: 243 GAVDTDVFSRLLRQIISQDVGKVLATVEELVMQGRE----LTQLAADFTWYLRNLLLVKT 298
Query: 747 -DIIAGTYTIGGRSLTEAELER-------LKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D + + +L + + E L +++ SE QL+ ++++ TL++
Sbjct: 299 SDNMEDVLDVSTENLAQLKEEAQMIESGVLLRYIRIFSELTNQLKYATQKRVLLEVTLIK 358
Query: 799 L 799
L
Sbjct: 359 L 359
>gi|169343396|ref|ZP_02864400.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
C str. JGS1495]
gi|169298482|gb|EDS80568.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
C str. JGS1495]
Length = 547
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 132/442 (29%), Positives = 226/442 (51%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISKK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIENAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EAV K ++ Q QNA
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEAVNKKVLNNKQ---QNAPQ 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|114704405|ref|ZP_01437313.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
gi|114539190|gb|EAU42310.1| DNA polymerase III subunits gamma and tau [Fulvimarina pelagi
HTCC2506]
Length = 668
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 171/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 17 RVLARKYRPHSFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTARILARALN 76
Query: 519 CVATDQTKPCGYCRE----CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+ +P + E C + G+ + +E+D + G+D +R I+ + SA
Sbjct: 77 YETGEIDQPTIHMAEPGIHCQAIMEGRHVDVVEMDAASHTGIDDIREIIAQVRYRPVSA- 135
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP+ V F+F TT+I VP ++ SRCQ++ +
Sbjct: 136 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFVFATTEIRKVPITVLSRCQRFDLRR 194
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
++ ++ L++I+ +E + +E DAL LIA A+GS+RD+ ++ DQ G +T+ V
Sbjct: 195 VESATLIGHLKQIAEKEKVEIEDDALRLIARAAEGSVRDSLSLTDQAIAHGAGAVTAGAV 254
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+++G+ ++++L E M D A + R+ G DP +++ LA
Sbjct: 255 RDMLGLADRVRVIDLFEYIMKGDAASALVELRDQYTVGADPAIVLGDLADF 305
>gi|423223946|ref|ZP_17210415.1| DNA polymerase III, subunit gamma and tau [Bacteroides
cellulosilyticus CL02T12C19]
gi|392637392|gb|EIY31263.1| DNA polymerase III, subunit gamma and tau [Bacteroides
cellulosilyticus CL02T12C19]
Length = 615
Score = 201 bits (511), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 199/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPTTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G I+
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + +S+ ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLSNQVSDALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R ++A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLALLEVGASIRERYQSQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|385809646|ref|YP_005846042.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
gi|383801694|gb|AFH48774.1| DNA polymerase III subunit gamma/tau [Ignavibacterium album JCM
16511]
Length = 553
Score = 201 bits (511), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 107/342 (31%), Positives = 192/342 (56%), Gaps = 17/342 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++K++P F+E++GQ + ++L N++ + RIA Y+F GPRG GKT+TA+I + ALNC+
Sbjct: 7 ARKWRPQKFEEVVGQEHITETLKNSLRKNRIAHAYIFTGPRGVGKTTTARILAKALNCLQ 66
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+PC C C +S + +E+D +G+D VR + + + P+ ++KV++
Sbjct: 67 PVDFEPCNKCDMCRAINEMQSMDIIEIDAATNRGIDEVRTLRESVKYA-PTLG-KYKVYI 124
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L ++++ AFLK LEEPP +F+F TTDI VP +I SRCQ++ F +++ I
Sbjct: 125 IDEVHMLTTESFNAFLKTLEEPPAHTIFVFATTDIHKVPPTIISRCQRFDFRRLQIETIK 184
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
+L+KI+ EE + ++ AL +IA ADG +RDA++ DQ ++ G+ + S V++++ ++
Sbjct: 185 HQLKKIADEEKIKIDDKALTIIAKKADGGMRDAQSYFDQVIAFCGENVDSETVSKILNLI 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
EE + + +S + +G D + L +I+ T +
Sbjct: 245 DEETYFNISDAIISKSFQTVFDTINTIYQNGWDFTDFLDGLIEHFRNILTVVLTNKTDQI 304
Query: 761 TEAELERLKH--------------ALKLLSEAEKQLRLSSER 788
AE+ + K+ L L++++++LR S+ R
Sbjct: 305 ECAEIYKPKYLQTSKEFSKGDLLRILNFLAKSQQELRFSNNR 346
>gi|357042702|ref|ZP_09104405.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
gi|355369081|gb|EHG16483.1| hypothetical protein HMPREF9138_00877 [Prevotella histicola F0411]
Length = 600
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 205/373 (54%), Gaps = 20/373 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C CN F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PIAEGEACNECESCNAFNEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ V +I SRCQ Y F ++ DI
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKVLPTILSRCQIYDFERMTVRDI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L+ ++ +EN+ + AL++IA ADG +RDA ++ DQ + + I+ V E + V
Sbjct: 186 IGHLKSVAEKENIKYDEQALNVIAEKADGGMRDALSIFDQAASFSQGDISYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ EE +++LA+ + +E + +++ G D L++ LAS + +++
Sbjct: 246 LDEENYFNIIDLALENKVSEIMVLLNTVINKGFDGGNLINGLASHVRNVLMAKDAQTLPL 305
Query: 760 LTEAELERLKH--------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSM--H 803
L ++ +RL++ ALK+++ + + R SS + TL+++ +
Sbjct: 306 LEVSDQQRLRYQSQAQKCPTPFLYDALKIMNRCDVEYRQSSNKRLLVELTLIEVAQITQK 365
Query: 804 SPDLTQSGSSRRQ 816
D+ SG S ++
Sbjct: 366 EDDVPASGRSPKR 378
>gi|148552984|ref|YP_001260566.1| DNA polymerase III subunits gamma and tau [Sphingomonas wittichii
RW1]
gi|148498174|gb|ABQ66428.1| DNA polymerase III, subunits gamma and tau [Sphingomonas wittichii
RW1]
Length = 582
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 162/289 (56%), Gaps = 8/289 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F+ELIGQ+ +V +L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPQNFNELIGQDAMVTTLANAIRRGRLAHAFLLTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C G+ + +E+D + +D VR I++ + S
Sbjct: 69 CIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTSIDDVREIIEAVRYA--SV 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSKSAFNGLLKTLEEPPAHVKFLFATTEVNKVPITVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
+I + A + A E + +P+AL LIA A+GS RD ++LDQ G R+ +
Sbjct: 187 RITADKLAAHFTNVVAAEGVEADPEALALIARAAEGSARDGLSILDQAIAHGSGRVEAQQ 246
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
V +++G+ + L + D A + R D GV+P+ ++ L
Sbjct: 247 VRDMLGLSDRGAVRRLFGEMLKGDAAAVLASIRGQYDLGVEPVAMLHGL 295
>gi|421850093|ref|ZP_16283061.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus NBRC
101655]
gi|371459089|dbj|GAB28264.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus NBRC
101655]
Length = 714
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/302 (33%), Positives = 172/302 (56%), Gaps = 14/302 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 99 RVLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 158
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C ++ + + +E+D ++ G+D VR I++ +
Sbjct: 159 CIGPDGNGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREIIE--ATRFRPM 216
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ++
Sbjct: 217 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVLSRCQRFDLR 276
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK------- 686
++ ++V +I+ +E++ + DAL L+A ADGS+RD ++LDQ G
Sbjct: 277 RVPQSELVGLFSRIAEKEHVRLSSDALALVARAADGSVRDGLSLLDQAIAQGTGQTDADG 336
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
I ++++++++G+ E + +LLE M+ + + G DP +++ + L+
Sbjct: 337 VIGATVISDMLGLADREVVFDLLEAVMTGKPEQALALLDAAYARGADPGLVLGDMLELVH 396
Query: 747 DI 748
+
Sbjct: 397 TV 398
>gi|302872503|ref|YP_003841139.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
obsidiansis OB47]
gi|302575362|gb|ADL43153.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
obsidiansis OB47]
Length = 534
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/364 (32%), Positives = 201/364 (55%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q+ + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQDHITKTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 64 LNPKDGNPCNECEVCRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSMCKKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK +EEPP +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTIEEPPSHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCINTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL-------------- 744
V S E + + + + +D+ + +K L D G+D + + L
Sbjct: 242 VTSTEIVKDFIAAVVENDSNKGLKVVNRLWDEGMDVNTFLEEAVKLLRSALILRLGAKEV 301
Query: 745 IMDIIAG--TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
++D++ + I +L ++ RL ++K+L + Q+R T F LL++ ++
Sbjct: 302 LIDMLEDDKAFVINISNLVDS--NRLVSSIKMLIDTANQIRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|291286041|ref|YP_003502857.1| DNA polymerase III subunits gamma and tau [Denitrovibrio
acetiphilus DSM 12809]
gi|290883201|gb|ADD66901.1| DNA polymerase III, subunits gamma and tau [Denitrovibrio
acetiphilus DSM 12809]
Length = 534
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 139/429 (32%), Positives = 221/429 (51%), Gaps = 22/429 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++K +P FDEL GQ VV +L N+I GR+A YLF GPRG GKTS A+I + A+NC
Sbjct: 5 ALARKLRPQNFDELSGQEFVVTTLKNSIEMGRVAHAYLFTGPRGVGKTSAARILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + PC C C + SG S + +E+DG + +G+D +R L+ LP +FKV
Sbjct: 65 LEPVGSNPCNKCENCTEITSGTSMDVVEIDGASNRGIDEIRE-LREAVRFLP-VKCKFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TTD +P +I SRCQKY FNKI
Sbjct: 123 YIIDEVHMLTEHAFNALLKTLEEPPDYVMFILATTDPQRLPATIISRCQKYDFNKIPFEI 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+ L E + + DAL+L+ N+DG +RD+ ++LDQ ++ G ++ + L+G
Sbjct: 183 MYDSLAGAMDTEGIEYDKDALNLVVRNSDGCMRDSLSLLDQIIAFTGGKLDEQSTSFLLG 242
Query: 699 VVSEEKLLE-LLELAMSSDTAETVKRARELMDSGVDPMV----LMSQLASLIMDIIAGTY 753
SE+ L++ L L + E EL GV+ L+ +L+M +I
Sbjct: 243 -FSEKSLVDKLFALIIKEQPEEIPDAIEELSGKGVNFAFATETLIGHTRNLLMQLITKK- 300
Query: 754 TIGGRSLTEAELERLKHALKLLSEAEK-------QLRLSSERCTWFTATLLQLGSMHSPD 806
+ LT E + K +K SE + Q L+ + F + + G + +
Sbjct: 301 --ENKELTSKENDYYKELVKNTSEQQLYALFQVFQKLLNDLKFFSFEQYIFEFGMYKAAN 358
Query: 807 LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSRHLG 866
+ SS+ +S+T+ + +T R A V K ++ P + + ++ ++ + +
Sbjct: 359 IGSVISSKGLASQTSSD---TTGRAATVKKPVAETSSKPTLSSTDLEMQNIISAVEQEIP 415
Query: 867 EVLSRIDGH 875
LS + GH
Sbjct: 416 GSLSSMLGH 424
>gi|73748424|ref|YP_307663.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp.
CBDB1]
gi|73660140|emb|CAI82747.1| putative DNA polymerase III, gamma and tau subunits
[Dehalococcoides sp. CBDB1]
Length = 570
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 113/280 (40%), Positives = 164/280 (58%), Gaps = 6/280 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + +K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A
Sbjct: 5 NCQVFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKA 64
Query: 517 LNCVATDQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+NC T+Q K PC C C G S + +E+D + G+D +R LK PS +
Sbjct: 65 VNCT-TNQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA 122
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
+KV++IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F++
Sbjct: 123 -NYKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHR 181
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLV 693
+ D+ +L KIS E +NVEP+AL LIA +A GS RD E +L Q+ + G I+ S V
Sbjct: 182 VSLVDMTRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQV 241
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+G+ +E++ L E + D +K ++ G+D
Sbjct: 242 QAALGISGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|376295369|ref|YP_005166599.1| DNA polymerase III subunits gamma and tau [Desulfovibrio
desulfuricans ND132]
gi|323457930|gb|EGB13795.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio
desulfuricans ND132]
Length = 622
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/285 (36%), Positives = 156/285 (54%), Gaps = 3/285 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L+ KY+P F+E+ GQ V L ++ +IAP YLF G RG GKT+ A+IF+ ALNC
Sbjct: 5 NLTAKYRPQTFEEVAGQQAVKSILSRAAAQDKIAPAYLFSGTRGVGKTTIARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
V +PC C C +G + + +E+DG + +G+D R + + + G R+KV
Sbjct: 65 VNAPTGEPCNVCDHCRQITAGVAPDVIEIDGASNRGIDDARRLKEDI--GYAPIDGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP R FI TT+ P +I SRCQ Y F + +
Sbjct: 123 FIIDEAHMLTKEAFNALLKTLEEPPPRATFIMATTEHHKFPATIISRCQHYTFKMLPQAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VNELVG 698
+VA L KI E L EP AL +IA GS+RD+ ++L Q +G+ + V +G
Sbjct: 183 LVAHLEKIMNLEGLKYEPSALSIIAKRGAGSVRDSMSLLGQALAMGEDVLREADVRGFLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
+ ++ L+E + D R+++D G+D + +L S
Sbjct: 243 LAGQDVFFGLMESMHARDLVAVGHVLRQVLDQGLDLGFFLRELTS 287
>gi|430751652|ref|YP_007214560.1| DNA polymerase III subunits gamma and tau [Thermobacillus composti
KWC4]
gi|430735617|gb|AGA59562.1| DNA polymerase III, subunit gamma/tau [Thermobacillus composti
KWC4]
Length = 604
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 117/358 (32%), Positives = 184/358 (51%), Gaps = 17/358 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L + ++P F +++GQ+ V+Q+L N I RIA YLF GPRGTGKTS AKI + A+NC
Sbjct: 5 ALYRAWRPQTFQDMVGQHHVIQTLQNAIRENRIAHAYLFNGPRGTGKTSAAKIMAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +G + +E+D + +G+D +R I + R+KV
Sbjct: 65 EHGPTPDPCNACAACEGIAAGTVLDVIEIDAASNRGIDEIRDIRDKVRYA--PTEVRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L S+ + A LK LEEPP V+FI TT+ +P +I SRCQ++ F + +
Sbjct: 123 YIIDEVHMLTSEAFNALLKTLEEPPGHVIFILATTEPHKLPATIVSRCQRFDFRPVPLEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
V RLR+I EE + E DAL IA ++G +RDA +L+Q + RIT ++ G
Sbjct: 183 QVGRLRRICEEEGIEAEDDALAYIARLSEGGMRDAIGLLEQTAAFTDGRITLDGAVDVTG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI----IAGTYT 754
+ E+ EL E D A ++ L +G M L D+ +A T
Sbjct: 243 GIPAERFEELAEAVRGRDAAAVMRVTEALTAAGKSADKCMEDLIVFFRDLLLLKLAPDRT 302
Query: 755 IGGRSLTEAE----------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ + E ERL + +L+ + ++R +++ T F LL++ ++
Sbjct: 303 AATERIVDVERFRNAGEGFTAERLFRMIDILNRYQNEMRFAAQPQTMFEVALLKICTL 360
>gi|407771418|ref|ZP_11118775.1| DNA polymerase III subunits gamma and tau [Thalassospira
xiamenensis M-5 = DSM 17429]
gi|407285523|gb|EKF11022.1| DNA polymerase III subunits gamma and tau [Thalassospira
xiamenensis M-5 = DSM 17429]
Length = 633
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/300 (33%), Positives = 175/300 (58%), Gaps = 8/300 (2%)
Query: 451 EEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA 510
EE + L++KY+P FDELIG +V++L N + GR+A ++ G RG GKT+TA
Sbjct: 43 EEAPKSEYQVLARKYRPKTFDELIGHGPMVKTLSNALESGRLAHAFVLTGVRGIGKTTTA 102
Query: 511 KIFSAALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH 565
+I + ALNC+ D +PCG C C + + +E+D ++ G+D +R +++
Sbjct: 103 RIIARALNCIGPDGKGNATIEPCGVCEHCRAIAEDRHVDVLEMDAASRTGVDDIRELIEG 162
Query: 566 LSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQS 625
+ SA R+K+++IDE H+L + A LK LEEPP+ V FIF TT+I +P ++ S
Sbjct: 163 VRYRPTSA--RYKIYIIDEVHMLSKSAFNALLKTLEEPPEHVKFIFATTEIRKIPITVLS 220
Query: 626 RCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL 684
RCQ++ +++ ++ A ++I+ E+ ++E +AL LIA ADGS+RD ++LDQ +S
Sbjct: 221 RCQRFDLRRVQTDELAAHYKRIATLEHADIEDEALALIARAADGSVRDGMSLLDQAISHG 280
Query: 685 GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++T+ V +++G+ ++ +L + M + E ++ G DP V++ + L
Sbjct: 281 AGKVTTQQVRDMLGLSDRSRIFDLFDRTMKGEINEALELLGAQYALGGDPAVMLQDMLDL 340
>gi|42525061|ref|NP_970441.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus HD100]
gi|39577272|emb|CAE81095.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus HD100]
Length = 621
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 177/299 (59%), Gaps = 3/299 (1%)
Query: 452 EGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAK 511
EG + + + +++K++P F +++GQN + Q+L N + GR+ LF GPRGTGKTS+A+
Sbjct: 13 EGWILSYQVIARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSAR 72
Query: 512 IFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
I + AL C PC C CN+ G S + +E+DG + G+D +R L+ A +P
Sbjct: 73 ILAKALRCPNAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRE-LRDTVAFMP 131
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
S S ++K+++IDE H+L + + A LK LEEPP VVFI TT++ +P++I SRCQ++
Sbjct: 132 S-SGKYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVVFIMATTEVHKIPQTILSRCQRFD 190
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITS 690
F +I I RL+ I E + + +AL ++A DGS+RD++++LDQ ++ +T
Sbjct: 191 FRRISTRSITERLKLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTR 250
Query: 691 SLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ V E++G+ L E L + ++ +K ++ +G +P + L +I +++
Sbjct: 251 ASVVEILGLTDRALLFETLNALIDRNSQAVLKVIEKIAAAGFEPHLYSQDLLEMIRNLL 309
>gi|270307947|ref|YP_003330005.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp. VS]
gi|270153839|gb|ACZ61677.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides sp. VS]
Length = 562
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 163/274 (59%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 69
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK PS + +KV+
Sbjct: 70 NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA-NYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 128 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E++N+EP+AL LIA +A GS RD E +L Q+ + G I+ S V +G+
Sbjct: 188 TRKLDKISKAEDINIEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D +K ++ G+D
Sbjct: 248 SGDERIKTLAENILKKDIKNGLKTLNAVVADGLD 281
>gi|424715523|ref|YP_007016238.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
gi|424014707|emb|CCO65247.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
serotype 4b str. LL195]
Length = 614
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 39 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 98
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 99 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 156
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 157 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 216
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 217 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEIT 276
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 277 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 336
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 337 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALIQ----- 391
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 392 ---LTQAGQS 398
>gi|147676386|ref|YP_001210601.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
gi|146272483|dbj|BAF58232.1| DNA polymerase III, gamma/tau subunits [Pelotomaculum
thermopropionicum SI]
Length = 558
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 170/291 (58%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E+IGQ + ++L N + GR+ Y+F G RGTGKT+ AK+ + ALNC
Sbjct: 5 ALYREWRPRTFGEIIGQEHITRTLKNAVEAGRVGHAYIFCGARGTGKTTAAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C G S + +E+D + +G+D +R + + + A+ R++V
Sbjct: 65 TGREGAEPCNRCESCRAVNEGISVDVIEIDAASNRGIDEIRDLREKIR--FAPAAGRYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L S+ + A LK LEEPP+ V I TT+ VP +I SRCQ++ F +I D
Sbjct: 123 YIIDEVHMLTSEAFNALLKTLEEPPRHAVLILATTEPHRVPLTILSRCQRFDFRRIIPAD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVG 698
I+ RL++++A L VE +AL LIA A+G LRDA ++LDQ + G ++T + V++++G
Sbjct: 183 IIKRLKEVAAGARLEVEEEALRLIARAAEGGLRDALSILDQAAAFGGMKVTEAGVHQILG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V + L + + + ++ EL G D + +LA + ++
Sbjct: 243 TVRTDALDRMAGCLAAGEAGRALRLVSELAGEGKDLRLFARELAGYLRALL 293
>gi|319900098|ref|YP_004159826.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
gi|319415129|gb|ADV42240.1| DNA polymerase III, tau subunit [Bacteroides helcogenes P 36-108]
Length = 611
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 121/379 (31%), Positives = 208/379 (54%), Gaps = 19/379 (5%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y F+
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFS 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L + + + ++ + ++++ G D ++ L+S + D++
Sbjct: 239 VIENLNVLDYEYYFKLTDFFLENKVSDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSK 298
Query: 750 -AGTYTI--GGRSLTE--------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T ++ G S+ E L L ++KL ++ + R S + TL+Q
Sbjct: 299 DAATLSLLEVGASIRERYRVQAQKCPLPFLYRSMKLCNDCDLNYRTSKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQ 816
+ + + D T G S +Q
Sbjct: 359 VAQLTTEGDDTSGGRSPKQ 377
>gi|238853617|ref|ZP_04643986.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
gi|238833761|gb|EEQ26029.1| DNA polymerase III subunit gamma/tau [Lactobacillus gasseri 202-4]
Length = 602
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 168/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ ++
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALKIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L + T+E + L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTV 290
>gi|154246111|ref|YP_001417069.1| DNA polymerase III subunits gamma and tau [Xanthobacter
autotrophicus Py2]
gi|154160196|gb|ABS67412.1| DNA polymerase III, subunits gamma and tau [Xanthobacter
autotrophicus Py2]
Length = 622
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 175/293 (59%), Gaps = 9/293 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N S GRIA Y+ G RG GKT+TA+I + ALN
Sbjct: 42 RVLARKYRPQNFTDLIGQEAMVRTLRNAFSSGRIAQAYILTGVRGVGKTTTARILARALN 101
Query: 519 CVATDQTK--PC----GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D + P ++C D I + + ME+D + ++ +R I++ SA
Sbjct: 102 YEPMDGSAGGPSLDLSVMGKQCRDIIESRHVDVMEMDAASNTSINDIREIIE--SARYRP 159
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R+KV++IDE H+L + + LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 160 VMARYKVYIIDEVHMLSTAAFNGLLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDL 219
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSS 691
+++ G++ A L I A+E + +EP+AL ++A A+GS+RD+ ++LDQ ++ G + +
Sbjct: 220 RRVEAGELAAHLAGICAKEGVTIEPEALAIVARAAEGSVRDSLSLLDQAIAHGGGAVGAE 279
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V L+G+ + ++++L E M + A + R+ D+G DP V+++ LA
Sbjct: 280 EVRRLLGLADKGRVIDLFEALMKGEMARALAEFRDQYDAGADPAVILTDLAEF 332
>gi|16804741|ref|NP_466226.1| hypothetical protein lmo2704 [Listeria monocytogenes EGD-e]
gi|254827269|ref|ZP_05231956.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|255028847|ref|ZP_05300798.1| hypothetical protein LmonL_06056 [Listeria monocytogenes LO28]
gi|284800410|ref|YP_003412275.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284993596|ref|YP_003415364.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|386051687|ref|YP_005969678.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|386054893|ref|YP_005972451.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404285213|ref|YP_006686110.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2372]
gi|404414782|ref|YP_006700369.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC7179]
gi|405759769|ref|YP_006689045.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2479]
gi|16412204|emb|CAD00917.1| dnaX [Listeria monocytogenes EGD-e]
gi|258599651|gb|EEW12976.1| dnaX [Listeria monocytogenes FSL N3-165]
gi|284055972|gb|ADB66913.1| hypothetical protein LM5578_0156 [Listeria monocytogenes 08-5578]
gi|284059063|gb|ADB70002.1| hypothetical protein LM5923_0156 [Listeria monocytogenes 08-5923]
gi|346425533|gb|AEO27058.1| DNA polymerase III subunits gamma and Tau [Listeria monocytogenes
FSL R2-561]
gi|346647544|gb|AEO40169.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
Finland 1998]
gi|404234715|emb|CBY56118.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2372]
gi|404237651|emb|CBY59053.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2479]
gi|404240481|emb|CBY61882.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC7179]
Length = 579
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|390566192|ref|ZP_10246670.1| DNA polymerase III, subunits gamma and tau [Nitrolancetus
hollandicus Lb]
gi|390170559|emb|CCF86015.1| DNA polymerase III, subunits gamma and tau [Nitrolancetus
hollandicus Lb]
Length = 592
Score = 201 bits (510), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/313 (37%), Positives = 175/313 (55%), Gaps = 19/313 (6%)
Query: 459 RSLSQKYKPIFF--DELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+SL +KY+P F DEL+GQ V ++L N I R+A YLF GPRGTGKTSTA++ + A
Sbjct: 15 QSLYRKYRPRSFAQDELVGQEHVARTLQNAIELDRVAHAYLFCGPRGTGKTSTARLLAKA 74
Query: 517 LNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAGLPS 572
+NC + +PC C C G + + +E+D + +G+D +R + +K+ A L
Sbjct: 75 VNCQDPSPHNRPCNACAACRAINIGATVDIIEIDAASNRGVDDIRDLREKVKYAPAQL-- 132
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R K ++IDE H L + AFLK LEEPP V F+ TT+ D +P ++ SRCQ++ F
Sbjct: 133 ---RVKFYIIDEAHQLTRDAFNAFLKTLEEPPPHVRFVLATTEADKLPDTVASRCQRFDF 189
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG------K 686
+I + RLR ++ E L+VE DAL LIA A GSLRDA +LDQL+L G +
Sbjct: 190 RRIPVAQAIERLRTVAQLEGLDVEEDALRLIARQATGSLRDALGLLDQLALFGESGDGKR 249
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
+T V ++G+ ++L+ L++ D ++ E ++G D L QL +
Sbjct: 250 TVTGDAVRAVLGLSRSDRLVGLVDALADRDPGAGLRLIAEAAETGEDVHQLNRQLVGYLR 309
Query: 747 DIIAGTYTIGGRS 759
++ GGR+
Sbjct: 310 TLL--HLRAGGRA 320
>gi|427384211|ref|ZP_18880716.1| DNA polymerase III, subunit gamma and tau [Bacteroides oleiciplenus
YIT 12058]
gi|425727472|gb|EKU90331.1| DNA polymerase III, subunit gamma and tau [Bacteroides oleiciplenus
YIT 12058]
Length = 617
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/376 (31%), Positives = 201/376 (53%), Gaps = 18/376 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G I+
Sbjct: 179 RINVDDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHISYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + +++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDHFLANQVGNALLLLNDVLNKGFDASHFVTGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLALLEVGASIRERYQAQAQKCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPDLTQSGSSR 814
+ + + SG R
Sbjct: 359 VAQLTAEGDDVSGGRR 374
>gi|395767070|ref|ZP_10447607.1| DNA polymerase III, subunit gamma and tau [Bartonella doshiae NCTC
12862]
gi|395414829|gb|EJF81266.1| DNA polymerase III, subunit gamma and tau [Bartonella doshiae NCTC
12862]
Length = 640
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D KP C + I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDKPTTVLDTIGEHCTEIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKIYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + LRKI+ E + VE AL +IA A+GS+RDA ++ DQ ++ +++ V
Sbjct: 189 IESTTLSTHLRKIAQHEKVEVEDQALSMIARAAEGSVRDALSIFDQAIAHSNGNVSAVTV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + + R ++G DP+ ++++LA
Sbjct: 249 RAMLGLADQARIIDLFEFIMKGNIIDALDEFRSQYEAGADPLTILTELADF 299
>gi|282881347|ref|ZP_06290026.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
gi|281304753|gb|EFA96834.1| DNA polymerase III, subunit gamma and tau [Prevotella timonensis
CRIS 5C-B1]
Length = 610
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 199/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P FD ++GQ ++ +L N + G++A YLF GPRG GKT+ A+IF+ A+NC+
Sbjct: 25 ARKYRPTSFDTVVGQTALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLH 84
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F +S N E+D + ++ ++ ++ +P ++KVF
Sbjct: 85 PTADGEACNECESCKAFNEQRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGKYKVF 142
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ DI
Sbjct: 143 IIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTTNDI 202
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+K++ +E + E +AL++IA ADG +RDA ++ DQ S IT + V E + V
Sbjct: 203 INHLKKVAEKEGITYEDEALNIIAEKADGGMRDALSVFDQAASFCQGNITYAKVTEDLNV 262
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + +++L + + ++ + ++ G ++ LAS I +++ T+
Sbjct: 263 LDTDNYFNIVDLCLQNKVSDAMLLLNSIIAKGFAGGHFINGLASHIRNVLMAKDAQTLPL 322
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+++ + ++ L ALKLL++ + R SS + TL+Q+ + P
Sbjct: 323 LEVSQQQRQKYEEQAKKCPTTFLYQALKLLNQCDINYRQSSNKRLLVEITLIQIAQITQP 382
Query: 806 DLTQSGSSR 814
D T +G R
Sbjct: 383 DDTPAGVGR 391
>gi|46908883|ref|YP_015272.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 4b str. F2365]
gi|226225256|ref|YP_002759363.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|386733396|ref|YP_006206892.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|405753917|ref|YP_006677382.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2378]
gi|406705445|ref|YP_006755799.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
gi|46882156|gb|AAT05449.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 4b str. F2365]
gi|225877718|emb|CAS06432.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
monocytogenes serotype 4b str. CLIP 80459]
gi|384392154|gb|AFH81224.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
07PF0776]
gi|404223117|emb|CBY74480.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2378]
gi|406362475|emb|CBY68748.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L312]
Length = 579
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALIQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|222530074|ref|YP_002573956.1| DNA polymerase III subunits gamma and tau [Caldicellulosiruptor
bescii DSM 6725]
gi|222456921|gb|ACM61183.1| DNA polymerase III, subunits gamma and tau [Caldicellulosiruptor
bescii DSM 6725]
Length = 534
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 120/364 (32%), Positives = 196/364 (53%), Gaps = 26/364 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++ Q + ++L N I + ++A Y+F GPRGTGKT+TAKI S A+NC
Sbjct: 4 ALYRKYRPKVFEDVVAQEHITRTLKNQIKQDKVAHAYIFCGPRGTGKTTTAKIMSRAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + K+ + +E+D + ++ VR I + P + + KV
Sbjct: 64 LNPKDGNPCNECEICRSILDEKTLDVLEIDAASNTSVNDVRQIRDEVR--YPPSVCKKKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP +FI TTDI VP +I SRCQ++ F +I D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPPSHALFILATTDIQKVPATILSRCQRFDFKRISVKD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL+KI EN++++ +AL LI+ A+G+LRDA T+L++ ++ + IT V L+G
Sbjct: 182 IYERLKKIVQMENISIDDNALYLISQKAEGALRDALTILERCMNTSDEHITYKFVANLLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V S E + E + + +D+ + +K L D G+D + + L+ A +G +
Sbjct: 242 VTSTEIVKEYIAAIVENDSNKGLKVINRLWDEGMDVNTFLEEAVKLLRS--ALILRLGAK 299
Query: 759 SLTEAELE----------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ LE RL +K+L + Q+R T F LL++ ++
Sbjct: 300 DVLVDMLESDKDFVINISNLVDSNRLVSIIKMLIDTANQIRW-----TRFPKVLLEINTI 354
Query: 803 HSPD 806
D
Sbjct: 355 KLCD 358
>gi|294508590|ref|YP_003572649.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
gi|294344919|emb|CBH25697.1| DNA polymerase III subunit tau [Salinibacter ruber M8]
Length = 759
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 195/362 (53%), Gaps = 24/362 (6%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F E++ Q V ++L N I R+A YLF GPRG GKT+ A+I + A+NC
Sbjct: 41 ARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCET 100
Query: 522 T-----DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
D +PC C C F +G+S N E+D + +D +R + + + +P +
Sbjct: 101 PREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVR--IPPQGDQ 158
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
KV+++DE H+L + + A LK LEEPP +FIF TT+ V +I SRCQ++ F +I
Sbjct: 159 KKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIP 218
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNE 695
+IV RLR+I E + + ++L L+A +G+LRDA + DQ LSL G + + +
Sbjct: 219 VPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGELTQ 278
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+GVV ++ L + + DTA ++ R ++ SG D ++ LA + +++ +++
Sbjct: 279 ALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVA-HSL 337
Query: 756 GGRSLTEA----------ELERLKHA--LKLLSEA---EKQLRLSSERCTWFTATLLQLG 800
GG +L E E ER A L+LL+ A E ++ S + TLL++
Sbjct: 338 GGEALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKMA 397
Query: 801 SM 802
+
Sbjct: 398 QL 399
>gi|20806577|ref|NP_621748.1| DNA polymerase III subunit gamma and tau [Thermoanaerobacter
tengcongensis MB4]
gi|20515019|gb|AAM23352.1| DNA polymerase III, gamma/tau subunits [Thermoanaerobacter
tengcongensis MB4]
Length = 518
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 116/357 (32%), Positives = 197/357 (55%), Gaps = 20/357 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQ+ +V++L N I GRI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPKSFSEVVGQDHIVRTLRNQIKMGRIGHAYLFTGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C +G + + +E+D + ++ VR + + + PS + ++K
Sbjct: 63 CLNPKDGEPCNSCEVCQAINTGTTMDVLEIDAASNNSVNDVRELRESVIYS-PSLT-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ + +P +I SRCQ++ F KI
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPRHVIFILATTEPEKLPDTILSRCQRFDFKKIPTK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
I L +I + + +E + + IAL +GS+RDA ++L+Q + + IT V E++
Sbjct: 181 QIAQNLERICQDSGIQIEQNGIRAIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEIL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
GV +EE L LL+ D ++++ +++ G+D + ++ D++ Y GG
Sbjct: 241 GVANEEMLFSLLDHIYEKDAVASLQQLDKILSYGIDLGNFLRSFTYMLRDMV--IYKTGG 298
Query: 758 RSLTEA---------------ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
L E + L +AL+ + ++++R + T T+L+L
Sbjct: 299 DELIEILYGDQETIKAKSQKYSIGFLTNALEKFTALQREIRYAVSPVTLLELTILRL 355
>gi|373854345|ref|ZP_09597143.1| DNA polymerase III, subunits gamma and tau [Opitutaceae bacterium
TAV5]
gi|372472212|gb|EHP32224.1| DNA polymerase III, subunits gamma and tau [Opitutaceae bacterium
TAV5]
Length = 402
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 13/346 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P FD+++GQ+ VV++L N I+R RIA YLF GPRGTGKTSTA+IF+ ALNC
Sbjct: 23 IARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCT 82
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ G S + +E+DG + +D++R + + P+ +FK++
Sbjct: 83 GGPKADFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRDLRDDVRYA-PTQG-KFKIY 140
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ V F+F TTD+ V +I SRCQ++ I D I
Sbjct: 141 IIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDELI 200
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ RL +I AEE ++ P+AL IA ADG +RDA+++ DQ+ S G I + V ++ G+
Sbjct: 201 IKRLAQIGAEEKISATPEALACIARMADGGMRDAQSIFDQMISFCGAEIGEADVLDVYGL 260
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI----MDIIAG---T 752
VS E++ L + + E V+ + +G D + L+ L I +D IA T
Sbjct: 261 VSAEQIAALAGAIAAGNHQELVRIVEDCDANGRDLVRLLHDLQGEIRQALLDAIANNGRT 320
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+G +T ++ RL AL+ E E ++L F TLL+
Sbjct: 321 TRLGNVPMTTEQVTRLLDALR---EGEGSVKLGLSDKINFEVTLLK 363
>gi|307566326|ref|ZP_07628765.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
gi|307344903|gb|EFN90301.1| DNA polymerase III, subunit gamma and tau [Prevotella amnii CRIS
21A-A]
Length = 590
Score = 200 bits (509), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 203/361 (56%), Gaps = 18/361 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P F ++GQ+ + +L N + G++A YLF GPRG GKT+TA+IF+ A+NC
Sbjct: 8 ARKYRPATFSSVVGQSSLTTTLKNAVISGKLAHAYLFCGPRGVGKTTTARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ C C C F G+S N E+D + ++ ++ +++ +P ++KVF
Sbjct: 68 PVSDGEACNECESCKAFNEGRSYNIFELDAASNNSVENIKELMEQ--TRIPPQIGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L S+ + AFLK LEEPP +++FI TT+ + +I SRCQ Y F ++ DI
Sbjct: 126 IIDEVHMLSSQAFNAFLKTLEEPPAQIIFILATTEKHKILPTILSRCQIYDFERMSVADI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L K++ +EN+ E AL++IA ADG +RDA ++ DQ++ + +IT V E + V
Sbjct: 186 IKHLEKVAEKENITYEESALNVIAEKADGGMRDALSIFDQVASFSQGKITYQKVTEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + ++++L++ + +E + ++ G DP +++ LA+ + +I+ T+
Sbjct: 246 LDIDNYFDIIDLSLQNKVSEIMLLLNNAINRGFDPGRIINGLAAHVRNILMAKDISTLPL 305
Query: 758 RSLTEAELERLKH------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+++ ++ER K+ AL+ +++ + R SS + TL+++ +
Sbjct: 306 IEVSKQQMERYKNQASKCPVKFLYKALEKMNQCDINYRQSSNKRLLAEITLIEVAQITQI 365
Query: 806 D 806
D
Sbjct: 366 D 366
>gi|296126216|ref|YP_003633468.1| DNA polymerase III subunits gamma and tau [Brachyspira murdochii
DSM 12563]
gi|296018032|gb|ADG71269.1| DNA polymerase III, subunits gamma and tau [Brachyspira murdochii
DSM 12563]
Length = 520
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 132/415 (31%), Positives = 219/415 (52%), Gaps = 25/415 (6%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 ENYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ D V +I+SRCQ+Y F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYTFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS+
Sbjct: 181 GIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSAD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
VN +VG + + E ++ MS + + ++L + VDP + + +++ I
Sbjct: 241 VNAVVGGNNFSFVKEFFDIIMSENKKSYFEFVKKLFEDAVDPRTFTNSVIEYMRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
+G I +TE E + LK L + E+++R +S T F +L
Sbjct: 301 SGIDDIKLLEITENERDDLKVFANHYSDDEIERILDYILLTEERIRSASNPRTIFEMRML 360
Query: 798 QL----GSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQY-MPQN 847
L + D+ S +S + S + AV PQY +P N
Sbjct: 361 LLLNTDNLIRPVDIIASNMQAVSASVNEDYGFESANNNAVSQSNQPKPQYDVPLN 415
>gi|379794949|ref|YP_005324947.1| DNA polymerase III subunit tau [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|356871939|emb|CCE58278.1| DNA polymerase III, tau subunit [Staphylococcus aureus subsp.
aureus MSHR1132]
Length = 565
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 112/350 (32%), Positives = 187/350 (53%), Gaps = 6/350 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P FD+++GQ V ++L N IS+ + + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ + +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSSDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
IV RL+ ++ + L E +AL IA ++G +RDA +++DQ G +T
Sbjct: 180 LDQIVERLKFVADAQALEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V +E L L E + D + K+ + + G + L++ + + D I
Sbjct: 240 VTGSVHDEALNHLFEDIVQGDVQSSFKKYHQFISEGKEVNRLINDMIYFVRDTIMNKTAD 299
Query: 756 GG---RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
R+L +LE L H + L+++ +R S + F L++L +
Sbjct: 300 KDSDYRALMNLDLEMLYHMIDLINDTLVSIRFSVNQNVHFEVLLVKLAEL 349
>gi|420147664|ref|ZP_14654939.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
gi|398400811|gb|EJN54342.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
CECT 5714]
Length = 602
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 168/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ ++
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L + T+E + L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTV 290
>gi|392940072|ref|ZP_10305716.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
gi|392291822|gb|EIW00266.1| LOW QUALITY PROTEIN: DNA polymerase III, subunit gamma/tau
[Thermoanaerobacter siderophilus SR4]
Length = 542
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 123/362 (33%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
VL +SL +KY+P F E++GQ +V++L N I +I YLF G RGTGKTS AKIF
Sbjct: 22 VLNMYQSLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIF 81
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+ A+NC+ +PC C C + + + +E+D + ++ VR + + + PS
Sbjct: 82 AKAVNCLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYS-PSL 140
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ ++KV++IDE H+L + + A LK LEEPP V+FI TT+ D +P +I SRCQ++ F
Sbjct: 141 A-KYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFK 199
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
KI I L KI + N+ +E L IAL +GS+RDA ++L+Q + + IT
Sbjct: 200 KIPTRLIAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYED 259
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E++GV ++E L LL+ + D A ++K+ +++ G+D + L ++ D++
Sbjct: 260 VCEMLGVANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMV--L 317
Query: 753 YTIGGRSLTE---AELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
Y GG L E +++E +K +AL+ + +K++R + T T+L
Sbjct: 318 YKTGGEELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTIL 377
Query: 798 QL 799
+L
Sbjct: 378 RL 379
>gi|160945467|ref|ZP_02092693.1| hypothetical protein FAEPRAM212_02992 [Faecalibacterium prausnitzii
M21/2]
gi|158443198|gb|EDP20203.1| DNA polymerase III, subunit gamma and tau [Faecalibacterium
prausnitzii M21/2]
Length = 628
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 154/250 (61%), Gaps = 2/250 (0%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L +K++P F++++GQ +V +L N I+ GR+ YLF G RGTGKT+ AKIF+ A+N
Sbjct: 3 RALYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ PCG C C +G + +E+D + G+D +R L+ +A PSA ++K
Sbjct: 63 CLHPVNGDPCGECEICKGIDNGSLLDVVEMDAASNNGVDDIRD-LRDETAYTPSAC-QYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y F +I
Sbjct: 121 VYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DI R+ I+ EE L + D +LIA ADG+LRDA ++LD + + +I + +V + G
Sbjct: 181 DIARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAG 240
Query: 699 VVSEEKLLEL 708
V L ++
Sbjct: 241 VTDRSYLFQI 250
>gi|391231662|ref|ZP_10267868.1| DNA polymerase III, subunit gamma/tau [Opitutaceae bacterium TAV1]
gi|391221323|gb|EIP99743.1| DNA polymerase III, subunit gamma/tau [Opitutaceae bacterium TAV1]
Length = 388
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 125/346 (36%), Positives = 195/346 (56%), Gaps = 13/346 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P FD+++GQ+ VV++L N I+R RIA YLF GPRGTGKTSTA+IF+ ALNC
Sbjct: 9 IARKWRPQTFDDVVGQDHVVRTLKNAIARNRIAHAYLFVGPRGTGKTSTARIFAKALNCT 68
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ G S + +E+DG + +D++R + + P+ +FK++
Sbjct: 69 GGPKADFDPADPAVKSITDGTSMDVIEIDGASNNSVDQIRDLRDDVRYA-PTQG-KFKIY 126
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ V F+F TTD+ V +I SRCQ++ I D I
Sbjct: 127 IIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTDVQKVLPTILSRCQRFDLKPIPDELI 186
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+ RL +I AEE ++ P+AL IA ADG +RDA+++ DQ+ S G I + V ++ G+
Sbjct: 187 IKRLAQIGAEEKISATPEALACIARMADGGMRDAQSIFDQMISFCGAEIGEADVLDVYGL 246
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI----MDIIAG---T 752
VS E++ L + + E V+ + +G D + L+ L I +D IA T
Sbjct: 247 VSAEQIAALAGAIAAGNHQELVRIVEDCDANGRDLVRLLHDLQGEIRQTLLDAIANNGRT 306
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+G +T ++ RL AL+ E E ++L F TLL+
Sbjct: 307 TRLGNVPMTTEQVTRLLDALR---EGEGSVKLGLSDKINFEVTLLK 349
>gi|15617964|ref|NP_224248.1| DNA polymerase III subunits gamma/tau [Chlamydophila pneumoniae
CWL029]
gi|16753004|ref|NP_445277.1| DNA polymerase III subunits gamma/tau [Chlamydophila pneumoniae
AR39]
gi|33241379|ref|NP_876320.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
TW-183]
gi|4376294|gb|AAD18193.1| DNA Polymerase III Gamma and Tau [Chlamydophila pneumoniae CWL029]
gi|7189650|gb|AAF38540.1| DNA polymerase III, gamma subunit [Chlamydophila pneumoniae AR39]
gi|33235887|gb|AAP97977.1| DNA polymerase III (gamma and tau subunits) dnaX [Chlamydophila
pneumoniae TW-183]
Length = 442
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 214/394 (54%), Gaps = 10/394 (2%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
L+ ++ S+KY+P F E++GQ+ VV L N + R A YLF G RGTGKT+ A+I +
Sbjct: 3 LQPYQASSRKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLARILA 62
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
ALNCV ++ +PC C C + SG S + +E+DG + +G++ +R I + +
Sbjct: 63 KALNCVHLSEDGEPCNQCFSCKEIASGSSLDVLEIDGASHRGIEDIRQI--NETVLFTPV 120
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+FK+++IDE H+L + + A LK LEEPPQ V F F TT+I +P +I SRCQK
Sbjct: 121 KAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRCQKMHLQ 180
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I + I+ +L ++ ++++ +AL IA A GSLRDAE++ D +SL K ++
Sbjct: 181 RIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLFPKSLSPDT 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + +G S++ L L + D A + + ++SGV P+ + L +++
Sbjct: 241 VAQALGFASQDSLRTLDNAILQRDYATALGIVTDFLNSGVAPVTFLHDLTLFYRNLLLTN 300
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSG 811
T S ++ + E+L + L E+ K L+ + T+ ++ + ++ P L++
Sbjct: 301 STTSKFS-SQYKTEQLLEIIDFLGESAKHLQNTIFEQTFLETVIIHIIRIYQRPVLSELI 359
Query: 812 SSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845
SS + SR E +E + +++S PQ P
Sbjct: 360 SSIK--SRQFEG--LRNIKEPTLTQQVSAPQPQP 389
>gi|256826612|ref|YP_003150571.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM
15641]
gi|256582755|gb|ACU93889.1| DNA polymerase III, subunit gamma/tau [Cryptobacterium curtum DSM
15641]
Length = 900
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 131/398 (32%), Positives = 208/398 (52%), Gaps = 28/398 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F +++GQ + ++L N I + +++ YLF GPRGTGKT+ A++ + AL C
Sbjct: 4 ALYRKYRPQVFGDVVGQEHIERTLKNAIEQDKVSHAYLFCGPRGTGKTTMARLLAKALLC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
++P G CREC + G + E+D ++ G++ VR + P+ + K+
Sbjct: 64 EKGPTSEPDGSCRECQEIAEGVHPDVYELDAASRTGVENVREEIIGRVNFAPTRG-KAKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP VVFI TTD VP +I SRCQ++ F+++ + +
Sbjct: 123 YIIDEVHMLSIAAFNALLKTLEEPPAHVVFILCTTDPQKVPETIHSRCQRFDFHRLSNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
IV+RL + EN+ E +ALDLIA ADG +R+A T L+QL G+ ++T + +L+G
Sbjct: 183 IVSRLGAVCVAENVEFEGEALDLIAHRADGGMRNALTALEQLIAFGEGKVTVAGAEDLLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI----IAGT-- 752
+ L E++ D A +++G D +A + ++ +AGT
Sbjct: 243 SLDSSDLAEIMAAVGVRDAAACFSWVASYVETGADLAQFTRDMAQQVRNLYVMSLAGTDA 302
Query: 753 ---YTIGGRSLTEAELE-----RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
T R +EL+ RL H L +L E +LR +S + F L ++ S
Sbjct: 303 ALDVTDAERRELASELKLFGPNRLTHLLSILGELSSELRTASNQRLAFEIALTRMIRPES 362
Query: 805 PDLTQSGSSRR---------QSSRTTEEDPSSTSREAV 833
DLT + R QS + + PS REAV
Sbjct: 363 -DLTLEALAARIETLEEQLAQSKQPAQSTPS--QREAV 397
>gi|357040016|ref|ZP_09101806.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
gibsoniae DSM 7213]
gi|355356996|gb|EHG04775.1| DNA polymerase III, subunits gamma and tau [Desulfotomaculum
gibsoniae DSM 7213]
Length = 650
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 117/339 (34%), Positives = 196/339 (57%), Gaps = 15/339 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P EL+GQ V ++L N + G+++ YLF GPRGTGKTSTAKI + A+NC
Sbjct: 6 ALYRQWRPQQLGELVGQKHVTETLRNALIAGKVSHAYLFCGPRGTGKTSTAKILARAINC 65
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC CR C + +SG + + +E+D + +G+D +R + +++ PS + ++
Sbjct: 66 SEQHEGEPCNRCRNCREIMSGATMDVIEIDAASNRGIDEIRELKENIKF-FPSLGSK-RI 123
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L ++ + A LK LEEPP VVF+ TT+ VP +I SRCQ++ F I +
Sbjct: 124 YIVDEVHMLTNEAFNALLKTLEEPPGHVVFVLATTEPHKVPLTILSRCQRFDFRPIPEEL 183
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR--ITSSLVNELV 697
I RL ++ A N +V+ +A+ I A GS+RDA ++LDQ LL +T+ V+ ++
Sbjct: 184 IAKRLEQVVARSNFDVDGEAVQAITRAAGGSMRDALSVLDQALLLSGETAVTADTVHSIL 243
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTY 753
G V+E+ L L A +++ E++ +G D L+ +L L++ +A
Sbjct: 244 GTVAEDVLFGLATGLAVKKAAGVLRQVAEIVAAGKDLQQLVKELTEYLRRLLVVFLAPEG 303
Query: 754 T-IGGRSLTEAEL------ERLKHALKLLSEAEKQLRLS 785
T G ++ AEL +RL A+ L EAE+ +R S
Sbjct: 304 TGEAGFNMPPAELLQLFTRDRLIRAIDHLVEAEQVMRRS 342
>gi|254824931|ref|ZP_05229932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|254851991|ref|ZP_05241339.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|255520363|ref|ZP_05387600.1| DNA polymerase III (gamma and tau subunits) [Listeria monocytogenes
FSL J1-175]
gi|300763536|ref|ZP_07073534.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404282278|ref|YP_006683176.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2755]
gi|404288092|ref|YP_006694678.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|258605289|gb|EEW17897.1| DNA polymerase III [Listeria monocytogenes FSL R2-503]
gi|293594171|gb|EFG01932.1| DNA polymerase III [Listeria monocytogenes FSL J1-194]
gi|300515813|gb|EFK42862.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
FSL N1-017]
gi|404228913|emb|CBY50318.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2755]
gi|404247021|emb|CBY05246.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
serotype 7 str. SLCC2482]
Length = 579
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|116629039|ref|YP_814211.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
gi|116094621|gb|ABJ59773.1| DNA polymerase III, gamma/tau subunit [Lactobacillus gasseri ATCC
33323]
Length = 602
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 168/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ ++
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L + T+E + L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTV 290
>gi|116874071|ref|YP_850852.1| DNA polymerase III subunits gamma and tau [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116742949|emb|CAK22073.1| DNA polymerase III, gamma and tau subunits [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 579
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|335040883|ref|ZP_08534003.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
gi|334179187|gb|EGL81832.1| DNA polymerase III, subunits gamma and tau [Caldalkalibacillus
thermarum TA2.A1]
Length = 582
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 188/356 (52%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F ++IGQ + Q+L N + YLF GPRGTGKTSTAKI + A+N
Sbjct: 4 QALYRVWRPQTFRDVIGQEHITQTLQNALVNQTYTHAYLFTGPRGTGKTSTAKIMAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R + + R K
Sbjct: 64 CQEAPTAEPCNQCAACRGITQGTVVDVVEIDAASNNGVDEIRDLRDKVKYA--PTEVRLK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSQGAFNALLKTLEEPPSHVMFILATTEPHKIPLTIMSRCQRFDFKRISQK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+++ RL+ I AEE V+ +AL+L+ A+G +RD ++LDQ +S +T + V +
Sbjct: 182 EMLKRLKLICAEEGFQVQEEALELLTQVAEGGMRDCLSLLDQVVSYADGEVTVADVEAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V++E L +L + + + T E ++R L++ G +P+ ++ L D++ G
Sbjct: 242 GSVAQEALTDLADCLLRNKTEEAIRRLNLLIEEGKEPVRIVEDLIYFYRDVLLYRQAPGS 301
Query: 758 R------SLTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQL 799
LTE ER++ A++ LS A++ ++ + + L+QL
Sbjct: 302 AEGFQRLQLTEQLKERIETYQDEHLFQAIERLSRAQQDMKWTHHPRVFLEVALIQL 357
>gi|144898666|emb|CAM75530.1| DNA-directed DNA polymerase [Magnetospirillum gryphiswaldense
MSR-1]
Length = 586
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 167/292 (57%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ+ +V++L N I+ GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPTDFATLIGQDAMVRTLTNAIASGRLAHAFVLTGVRGVGKTTTARIIARALN 70
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C + + +E+D ++ G++ +R I++ S
Sbjct: 71 CIGPDGQGGPTIDPCGQCEHCRAIAEDRHVDILEMDAASRTGVNDIREIIE--SVRYRPT 128
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S RFKV++IDE H+L + + A LK LEEPP+ V FIF TT+I +P ++ SRCQ++
Sbjct: 129 SARFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFIFATTEIRKIPVTVLSRCQRFDLR 188
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+++ + I+ +E +EP AL LIA ADGS+RD ++LDQ +S ++ +
Sbjct: 189 RVEMEVLAKHFSGIADKEGAEIEPGALRLIARAADGSVRDGLSLLDQAISHGAGLVSEAQ 248
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ ++ +L EL M A + E G DP V++ + L
Sbjct: 249 VRDMLGLADRARVFDLFELVMKGQMAPALDLLAEQYALGADPAVVVQDMLEL 300
>gi|427408007|ref|ZP_18898209.1| DNA polymerase III, subunit gamma and tau [Sphingobium yanoikuyae
ATCC 51230]
gi|425713970|gb|EKU76982.1| DNA polymerase III, subunit gamma and tau [Sphingobium yanoikuyae
ATCC 51230]
Length = 541
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 16/314 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRNFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C G+ + +E+D + G+D VR I++ + +
Sbjct: 69 CIGPDGQGGPTIDPCGVCEPCMAIAEGRHIDVVEMDAASHTGVDDVREIIEAVRYA--AV 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL---SLLGK---R 687
+I + + E + EPDAL LIA A+GS RD ++LDQ + +G+
Sbjct: 187 RIPAEMLAGHFAHVVEAEQVAAEPDALSLIAQAAEGSARDGLSILDQAIAHAEMGEGEPM 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
+T++ V E++G+ LL L + DTA + R+ GV+P+ LM L L+
Sbjct: 247 VTAAQVREMLGLSDRGSTRRLLGLLLEGDTAALLGGVRDQYALGVEPLSLMRGLLELVHA 306
Query: 748 IIAGTYTIGGRSLT 761
+ T GR +
Sbjct: 307 V---TLVKAGRDIA 317
>gi|15835577|ref|NP_300101.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
J138]
gi|8978415|dbj|BAA98252.1| DNA polymerase III gamma and tau [Chlamydophila pneumoniae J138]
Length = 442
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 214/394 (54%), Gaps = 10/394 (2%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
L+ ++ S+KY+P F E++GQ+ VV L N + R A YLF G RGTGKT+ A+I +
Sbjct: 3 LQPYQASSRKYRPQIFREILGQSSVVAVLKNALVFNRAAHAYLFSGIRGTGKTTLARILA 62
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
ALNCV ++ +PC C C + SG S + +E+DG + +G++ +R I + +
Sbjct: 63 KALNCVHLSEDGEPCNQCFSCKEIASGSSLDVLEIDGASHRGIEDIRQI--NETVLFTPV 120
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+FK+++IDE H+L + + A LK LEEPPQ V F F TT+I +P +I SRCQK
Sbjct: 121 KAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHRIPGTILSRCQKMHLQ 180
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I + I+ +L ++ ++++ +AL IA A GSLRDAE++ D +SL K ++
Sbjct: 181 RIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLFPKSLSPDT 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + +G S++ L L + D A + + ++SGV P+ + L +++
Sbjct: 241 VAQALGFASQDSLRTLDNAILQRDYATALGIVTDFLNSGVAPVTFLHDLTLFYRNLLLTN 300
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSG 811
T S ++ + E+L + L E+ K L+ + T+ ++ + ++ P L++
Sbjct: 301 STTSKFS-SQYKTEQLLEIIDFLGESAKHLQNTIFEQTFLETVIIHIIRIYQRPVLSELI 359
Query: 812 SSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845
SS + SR E +E + +++S PQ P
Sbjct: 360 SSIK--SRQFEG--LRNIKEPTLTQQVSAPQPQP 389
>gi|405756835|ref|YP_006680299.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2540]
gi|404226035|emb|CBY77397.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2540]
Length = 579
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|326390316|ref|ZP_08211875.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
gi|325993593|gb|EGD52026.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
ethanolicus JW 200]
Length = 518
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 121/357 (33%), Positives = 200/357 (56%), Gaps = 20/357 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQ +V++L N I +I YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPRSFKEVVGQEHIVRTLKNQIKLKKIGHAYLFTGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C + + + +E+D + ++ VR + + + PS + ++K
Sbjct: 63 CLNNKDGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYS-PSIA-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ D +P +I SRCQ++ F KI
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFKKIPTR 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
I L KI + N+ +E L IAL +GS+RDA ++L+Q + + IT V E++
Sbjct: 181 LIAQNLEKICIDSNIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYEDVCEML 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
GV ++E L LL+ + D A ++K+ +++ G+D + L ++ D++ Y GG
Sbjct: 241 GVANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMV--LYKTGG 298
Query: 758 RSLTE---AELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQL 799
L E +++E +K +AL+ + +K++R + T T+L+L
Sbjct: 299 EELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTILRL 355
>gi|384449702|ref|YP_005662304.1| DNA polymerase III subunits gamma and tau [Chlamydophila pneumoniae
LPCoLN]
gi|269302914|gb|ACZ33014.1| DNA polymerase III, subunits gamma and tau [Chlamydophila
pneumoniae LPCoLN]
Length = 442
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 126/394 (31%), Positives = 214/394 (54%), Gaps = 10/394 (2%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
L+ ++ S+KY+P F E++GQ+ VV L N + R A YLF G RGTGKT+ A+I +
Sbjct: 3 LQPYQASSRKYRPQIFREILGQSSVVAVLKNALIFNRAAHAYLFSGIRGTGKTTLARILA 62
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
ALNCV ++ +PC C C + SG S + +E+DG + +G++ +R I + +
Sbjct: 63 KALNCVHLSEDGEPCNQCFSCKEIASGSSLDVLEIDGASHRGIEDIRQI--NETVLFTPV 120
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+FK+++IDE H+L + + A LK LEEPPQ V F F TT+I +P +I SRCQK
Sbjct: 121 KAKFKIYIIDEVHMLTKEAFNALLKTLEEPPQHVKFFFATTEIHKIPGTILSRCQKMHLQ 180
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I + I+ +L ++ ++++ +AL IA A GSLRDAE++ D +SL K ++
Sbjct: 181 RIPEKTILEKLSLMAQDDHIEASQEALAPIARAAQGSLRDAESLYDYVISLFPKSLSPDT 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + +G S++ L L + D A + + ++SGV P+ + L +++
Sbjct: 241 VAQALGFASQDSLRTLDNAILQRDYATALGIVTDFLNSGVAPVTFLHDLTLFYRNLLLTN 300
Query: 753 YTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSG 811
T S ++ + E+L + L E+ K L+ + T+ ++ + ++ P L++
Sbjct: 301 STTSKFS-SQYKTEQLLEIIDFLGESAKHLQNTIFEQTFLETVIIHIIRIYQRPVLSELI 359
Query: 812 SSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMP 845
SS + SR E +E + +++S PQ P
Sbjct: 360 SSIK--SRQFEG--LRNIKEPTLTQQVSAPQPQP 389
>gi|389576439|ref|ZP_10166467.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
gi|389311924|gb|EIM56857.1| DNA polymerase III, subunit gamma/tau [Eubacterium cellulosolvens
6]
Length = 542
Score = 200 bits (509), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/276 (37%), Positives = 165/276 (59%), Gaps = 5/276 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F+E+ GQ+ +V++L N + RI YLF G RGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRKFRPTTFEEVKGQDHIVKTLKNQLRANRIGHAYLFCGTRGTGKTTIAKVFARAVN 63
Query: 519 CV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C + PC C C + G S N +E+D + G+D +R I + + G ++
Sbjct: 64 CEHPLEDGSPCNECETCRGILKGTSNNVIEIDAASNNGVDNIREIREEV--GYRPTQGKY 121
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP+ V+FI TT+I+ +P +I SRCQ+Y F++I
Sbjct: 122 KVYIIDEVHMLSTGAFNALLKTLEEPPEYVIFILATTEINKIPVTILSRCQRYNFHRITI 181
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNE 695
I RLR++ EN+ E A+ +A ADGS+RDA ++LDQ LG+++T V E
Sbjct: 182 DTIAGRLRELLTRENVEAEDRAVRYVAKTADGSMRDALSLLDQCIAFYLGEKLTYEKVLE 241
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
++G V + LL + D + +V+ +++ G
Sbjct: 242 VLGTVDTDVFSRLLRCVIGGDASSSVRILGDMVREG 277
>gi|300362311|ref|ZP_07058487.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
gi|300353302|gb|EFJ69174.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus gasseri
JV-V03]
Length = 602
Score = 200 bits (508), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 168/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADRGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E + E AL++IA ADG +RD+ ++LDQ LS ++ ++
Sbjct: 182 DLIARMTYILGQEKIGFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L + +T+E + L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLDLLKGETSEAFEIVHNLLQDGASTKNILDELISLTV 290
>gi|423711037|ref|ZP_17685357.1| DNA polymerase III, subunit gamma and tau [Bartonella washoensis
Sb944nv]
gi|395414951|gb|EJF81386.1| DNA polymerase III, subunit gamma and tau [Bartonella washoensis
Sb944nv]
Length = 646
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPISA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ +VA LR+I+ EN+ VE AL +IA A+GS RDA ++ DQ ++ +++ V
Sbjct: 189 IESTALVAHLRQIAKYENVEVEDQALFMIARAAEGSARDALSIFDQAIAHSNCNVSAVAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGNVVNALHELRSQYDAGADPLTILTELADF 299
>gi|168700663|ref|ZP_02732940.1| DNA polymerase III gamma and tau subunits [Gemmata obscuriglobus
UQM 2246]
Length = 614
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/284 (35%), Positives = 171/284 (60%), Gaps = 5/284 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++++Y+P F ELIGQ V +LVN + GR+A YLF G RG GKTS A+I + ALNC+
Sbjct: 20 VARRYRPQQFSELIGQEHVAGALVNALKSGRVAHAYLFTGARGVGKTSAARILAKALNCL 79
Query: 521 ATDQTKP--CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
TD+ P C C C ++G + +E+DG + ++ VR + +++ G A R+K
Sbjct: 80 KTDKATPTPCDECDSCRAVMTGDDVDVLEIDGASNNKVEEVRDLRQNV--GFRPARGRYK 137
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H+L + + A LK LEEPP+ V FI TT++ +P +I SRCQ++ F + G
Sbjct: 138 IYIIDEVHMLSTSAFNALLKTLEEPPEHVKFILATTEVQKIPITILSRCQRFDFAHVGPG 197
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
I +L++I E + DAL L+A A GS+RD++++LDQ L+ +T+ V ++
Sbjct: 198 KIFEQLKRIVEREGHQADDDALRLVARRAAGSMRDSQSLLDQLLASSSGTLTAGQVTAVL 257
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G +++++EL + +++D + R E ++ G+ L+ Q+
Sbjct: 258 GTAGDDRVIELAKAILANDPKTALDRIAEWVERGLQIGELIDQV 301
>gi|13474589|ref|NP_106158.1| DNA polymerase III subunits gamma and tau [Mesorhizobium loti
MAFF303099]
gi|14025343|dbj|BAB51944.1| DNA polymerase III tau [Mesorhizobium loti MAFF303099]
Length = 604
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 171/299 (57%), Gaps = 7/299 (2%)
Query: 451 EEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA 510
E G R L++KY+P F EL+GQ +V++L N + GRIA ++ G RG GKT+TA
Sbjct: 12 ENGKAAAYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTA 71
Query: 511 KIFSAALNCVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
+I + ALN +P C + G+ + +E+D + G+D +R I++ +
Sbjct: 72 RILARALNYKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERV 131
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
SA R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SR
Sbjct: 132 RYAPVSA--RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 189
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
CQ++ +I G +VA L I+A+E ++V+ DAL +IA A+GS RD+ ++LDQ G
Sbjct: 190 CQRFDLRRIDAGALVAHLSSIAAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGA 249
Query: 687 -RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+++ V ++G+ ++++L E M D A + R D+G DP +++ LA
Sbjct: 250 GAVSAEAVRAMLGLADRARIVDLFEHVMKGDVAAALAEFRTQYDTGADPAAVLTDLAEF 308
>gi|395780919|ref|ZP_10461363.1| DNA polymerase III, subunit gamma and tau [Bartonella washoensis
085-0475]
gi|395416794|gb|EJF83156.1| DNA polymerase III, subunit gamma and tau [Bartonella washoensis
085-0475]
Length = 646
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPISA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ +VA LR+I+ EN+ VE AL +IA A+GS RDA ++ DQ ++ +++ V
Sbjct: 189 IESTALVAHLRQIAKYENVEVEDQALFMIARAAEGSARDALSIFDQAIAHSNCNVSAVAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGNVVNALHELRSQYDAGADPLTILTELADF 299
>gi|386045012|ref|YP_005963817.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404411956|ref|YP_006697544.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC5850]
gi|345538246|gb|AEO07686.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes
10403S]
gi|404231782|emb|CBY53186.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC5850]
Length = 579
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|289548682|ref|YP_003473670.1| DNA polymerase III subunits gamma and tau [Thermocrinis albus DSM
14484]
gi|289182299|gb|ADC89543.1| DNA polymerase III, subunits gamma and tau [Thermocrinis albus DSM
14484]
Length = 469
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/272 (36%), Positives = 167/272 (61%), Gaps = 3/272 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++KY+P F +++GQ + ++N + G++ YLF GPRGTGKT+ A+I + A+NC+
Sbjct: 5 FARKYRPKKFSQVVGQETAKRVILNAVRLGKLHHAYLFSGPRGTGKTTLARILTRAVNCL 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PCG C C G + +E+D + +G+D +R LK + P ++KV+
Sbjct: 65 NPQEGEPCGECENCVAIDKGSFPDLVEMDAASNRGIDDIRN-LKDAVSYTPLKG-KYKVY 122
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L + + A LK LEEPP R +F+ TT+ + +P +I SRCQ+ +F+K+++ +
Sbjct: 123 ILDEAHMLTKEAFNALLKTLEEPPPRTIFVLCTTEYEKIPPTILSRCQRIVFSKLEEDLV 182
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
V+ L I EE LN E AL +IA +DG++RDA ++LDQ + G+ ++ +V E +G+
Sbjct: 183 VSHLFYICREEGLNCEEKALRIIARASDGAMRDALSLLDQAATYGEGNVSEQVVEEFLGI 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSG 731
VS+EK+ E L L + D + R R+L G
Sbjct: 243 VSQEKVREFLLLLLEGDVDTALARLRDLHSRG 274
>gi|404378713|ref|ZP_10983798.1| DNA polymerase III, subunit gamma and tau [Simonsiella muelleri
ATCC 29453]
gi|294483836|gb|EFG31520.1| DNA polymerase III, subunit gamma and tau [Simonsiella muelleri
ATCC 29453]
Length = 654
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 112/352 (31%), Positives = 185/352 (52%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + +GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 7 LARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 66
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C D +G+ + +E+D + G+D +R +L++ P+ ++KV+
Sbjct: 67 NAQHGEPCGVCQSCRDIDAGRFVDLLEIDAASNTGIDNIREVLENAQYA-PTVG-KYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 125 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNLTPQQV 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
A L + E + EP+AL L+ A GS+RDA ++LDQ +G + V E++G
Sbjct: 185 TAHLTHVLKTEQIVYEPNALALLGYAAQGSMRDALSLLDQAIAMGSGSVQERDVREMIGA 244
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V + L ELL M D +K+A+E+ + + +++ LA L+ + S
Sbjct: 245 VDKRYLYELLTFLMEQDGENLIKKAQEMASNAIGFDGVLNDLAMLLQRLALIKTVPTAIS 304
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
+ E E L S+ + QL L+ + F TLL++
Sbjct: 305 TDDPEYEYLLQLANYFSDEQIQLYYQCAIHGKQDLSLAPDEYAGFVMTLLRM 356
>gi|374992794|ref|YP_004968293.1| DNA polymerase III subunits gamma and tau [Desulfosporosinus
orientis DSM 765]
gi|357211160|gb|AET65778.1| DNA polymerase III, subunit gamma/tau [Desulfosporosinus orientis
DSM 765]
Length = 556
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 131/433 (30%), Positives = 226/433 (52%), Gaps = 41/433 (9%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ + ++ +N + +G++A YLF GPRGTGKTSTAKI + ALNC
Sbjct: 5 ALYREWRPKLFRDIVGQEHIKKTFLNALRQGKVAHAYLFSGPRGTGKTSTAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
D +PC +C C G + E+D + +G++ +R + ++ L S + KV
Sbjct: 65 EHRDDEEPCNFCPSCMSIDQGSAMEVFEIDAASNRGINEIRDLRDNIK--LSSIEGKHKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP +VVFI TT++ +P +I SR Q++ F++I D
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPQVVFILATTEVQKIPLTILSRVQRFEFHRISAED 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I RL ++ V DAL +IA ++G LRDA ++LDQ L + V +++G+
Sbjct: 183 IQQRLAEVCNSLQREVHSDALMVIAQKSEGGLRDALSILDQCLLQSDPVGVEEVYQVLGM 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI 755
V E +L++ +S D A+++ E + G DP ++ +L + ++ AGT +
Sbjct: 243 VGETYSAQLVDKIISKDYAKSLGFLAEGIQQGRDPRQIIRELLEYLRQMLLASTAGTTPM 302
Query: 756 GGRSLTEAELERLKHA--------LKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDL 807
+ + L++ K + +L + E QL+ +S A LL + ++H
Sbjct: 303 VLPHIQDQLLKQCKQVGISEILRWISILLQGEGQLKYASN--ARLAAELLLVQTIH---- 356
Query: 808 TQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG-PQYMPQNAVSPASLRE-PVNGNSRHL 865
E P+S + + R+S Q + N V ++ E + GNS+
Sbjct: 357 --------------ESQPASIHGQEEILTRLSVIEQTIKSNTVLSKNVHEKKIPGNSKLN 402
Query: 866 GE-----VLSRID 873
GE VL R++
Sbjct: 403 GETNQTVVLKRVN 415
>gi|392391723|ref|YP_006428325.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dehalogenans ATCC 51507]
gi|390522801|gb|AFL98531.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dehalogenans ATCC 51507]
Length = 556
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/297 (35%), Positives = 177/297 (59%), Gaps = 6/297 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ V ++L+N + + ++A YL GPRGTGKT+TAK+ + ALNC
Sbjct: 5 ALYREWRPKNFKDMVGQEHVTKTLMNALVQSKVAHAYLLSGPRGTGKTTTAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
D +PC C C G + E+D + +G+D +R + LSAG ++
Sbjct: 65 EHRDGVEPCNQCPSCLSIDQGSAMEVFEIDAASNRGIDEIRDLRDKVRLSAG----ESKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRISL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I L K+ +V+ +AL +IA ++G LRDA ++LDQ LL ++ V +++
Sbjct: 181 EQIYKHLDKVCQTIGRDVDSEALQIIAQKSEGGLRDALSILDQCLLLDGKLGVEQVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT 754
G+V EE +L++ ++ D A+T+ E ++ G+DP ++ +L + + T T
Sbjct: 241 GMVGEEFSAKLVDHLLARDYAKTLGFLGEGINQGMDPRQIIRELLDYLRQALLYTST 297
>gi|291460808|ref|ZP_06600198.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291416581|gb|EFE90300.1| DNA polymerase III, gamma and tau subunit [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 563
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 205/385 (53%), Gaps = 34/385 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++ F EL GQ V ++L N + G+I YLF G RGTGKTS AKIF+ A+NC
Sbjct: 4 ALYRKWRSRDFGELKGQGAVTEALRNQVRSGKIGHAYLFCGTRGTGKTSAAKIFARAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC CR C + +SG S N +E+D + G++ +R I + + P S R++V
Sbjct: 64 ENPQDGNPCNLCRSCREILSGSSMNVLEMDAASNNGVEDIRKIREQVE--YPPVSGRYRV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + AFLK LEEPP+ VVFI TT+ + +P +I SRCQ+Y F +I
Sbjct: 122 YIIDEVHMLSAAAFNAFLKTLEEPPEYVVFILATTEPNRLPITILSRCQRYDFRRISSEV 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ---------------LSLL 684
I RL +I+ E + V +AL IA DGS+RDA ++LDQ L +L
Sbjct: 182 IAERLGEIAGAEGIPVSAEALSYIARVGDGSMRDAVSLLDQCSAFQFDREINYEDALGIL 241
Query: 685 GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ--LA 742
G + SS+ +EL+ +S ++ L L +E +++ REL D + + LA
Sbjct: 242 GA-VDSSVFSELIRALSAREIRSALSL-----LSELIEQGRELSQFLSDFLYYVRNLLLA 295
Query: 743 SLIMDIIAGTYTIG----GRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTAT 795
+ D ++G + R L + EL + L ++ LSE QLR S E+
Sbjct: 296 KTVED-LSGLVDLSRENFQRLLEDKELFSTDELLRYIRRLSELINQLRYSPEKRVLIEIE 354
Query: 796 LLQLGSMHSPDLTQSGSSRRQSSRT 820
L++L + D++ G + R + T
Sbjct: 355 LIKLAYPET-DISPEGINARIADLT 378
>gi|406879386|gb|EKD28004.1| hypothetical protein ACD_79C00466G0002 [uncultured bacterium]
Length = 541
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 105/272 (38%), Positives = 164/272 (60%), Gaps = 3/272 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F+++IGQ + Q+L+N I GRIA Y+F GPRG GKT+TA++ + ALNC
Sbjct: 6 LARKFRPKLFEDVIGQEHITQTLMNAIKAGRIAHAYIFSGPRGVGKTTTARLLACALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G S +EVDG + G+D+VR + + ++S +FKV+
Sbjct: 66 TGPTDSPCGTCNSCREIAEGNSLEVIEVDGASNNGVDQVRNLTDTIKYN--TSSNKFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP RVVFIF TT++ V +I SRCQ+++F I + I
Sbjct: 124 IIDEVHMLSNAAFNALLKNLEEPPPRVVFIFATTELHKVLETILSRCQQFIFKLIPEKTI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ RL+K+ E E +IA + GS+RDAET+L++ ++ G IT +G+
Sbjct: 184 ITRLKKLVEAEKCEAEEKVFKIIANASGGSMRDAETILEKVITFCGNSITEEKSLLALGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSG 731
VS + L E+ E + + A+ ++++ G
Sbjct: 244 VSSDFLFEMAEGILIENVAKIFVVISKIVNEG 275
>gi|422810741|ref|ZP_16859152.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
gi|378750946|gb|EHY61537.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
FSL J1-208]
Length = 580
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/372 (31%), Positives = 200/372 (53%), Gaps = 29/372 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V++ L +L+ A D AE + L+ G DP+ L+ L D++ Y
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVL--LYQKAP 299
Query: 758 -------RSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 300 DLEETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ--- 356
Query: 802 MHSPDLTQSGSS 813
LTQ+G S
Sbjct: 357 -----LTQAGQS 363
>gi|302384618|ref|YP_003820440.1| DNA polymerase III subunits gamma and tau [Clostridium
saccharolyticum WM1]
gi|302195246|gb|ADL02817.1| DNA polymerase III, subunits gamma and tau [Clostridium
saccharolyticum WM1]
Length = 531
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/357 (33%), Positives = 192/357 (53%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F ++ GQ+ +VQ+L N I GRI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPPSFSDVKGQDHIVQTLKNQIVAGRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG CR C + +G S N +E+D + G++ +R I + P +++V
Sbjct: 65 ECPEDGSPCGECRTCKNIAAGASLNVVEIDAASNNGVENIREIRDEVQ--YPPTEGKYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT++ +P ++ SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVLSRCQRYDFKRITVET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
IV L++++A E++ VE AL IA +ADG+LRDA ++LDQ G+ +T V +++
Sbjct: 183 IVEHLKELTAAEHIQVEDRALTYIAKSADGALRDALSLLDQCIAFHYGELLTYDNVLDVL 242
Query: 698 GVVSEEKLLELLELAMSSDTA-------ETVKRARELMDSGVDPMVLMSQLASL------ 744
G V + + + T E V + REL +D + + L L
Sbjct: 243 GAVDITVFGTMFRAIVENRTKDCIICLEELVIQGRELGQFVIDFIWYLRNLLILKSVDNG 302
Query: 745 --IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ T+ + E L +++ S+ QLR + ++ L++L
Sbjct: 303 ENLLDMSTENQTLLKEDSRLTDNETLLRYIRVFSDLSNQLRYAFQKRVLIEVALIKL 359
>gi|83814225|ref|YP_446655.1| DNA polymerase III subunits gamma and tau [Salinibacter ruber DSM
13855]
gi|83755619|gb|ABC43732.1| DNA polymerase III, subunits gamma and tau, putative [Salinibacter
ruber DSM 13855]
Length = 728
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 119/362 (32%), Positives = 195/362 (53%), Gaps = 24/362 (6%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F E++ Q V ++L N I R+A YLF GPRG GKT+ A+I + A+NC
Sbjct: 10 ARKYRPSLFTEVVAQEHVTETLKNAIRMERLAHAYLFSGPRGVGKTTAARILAKAINCET 69
Query: 522 T-----DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
D +PC C C F +G+S N E+D + +D +R + + + +P +
Sbjct: 70 PREEREDGAEPCCECDSCESFEAGRSLNVFEMDAASNNKVDDIRELREKVR--IPPQGDQ 127
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
KV+++DE H+L + + A LK LEEPP +FIF TT+ V +I SRCQ++ F +I
Sbjct: 128 KKVYILDEVHMLSKQAFNALLKTLEEPPAHALFIFATTEPHKVLPTILSRCQRFDFRRIP 187
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNE 695
+IV RLR+I E + + ++L L+A +G+LRDA + DQ LSL G + + +
Sbjct: 188 VPEIVQRLREICETEGVEADEESLMLLARKGNGALRDALSAFDQALSLCGATLEYGELTQ 247
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+GVV ++ L + + DTA ++ R ++ SG D ++ LA + +++ +++
Sbjct: 248 ALGVVDQDLYFRLTDHVAAQDTAGMIELVRHVVRSGYDLQEMLVGLAEHLRNLLVA-HSL 306
Query: 756 GGRSLTEA----------ELERLKHA--LKLLSEA---EKQLRLSSERCTWFTATLLQLG 800
GG +L E E ER A L+LL+ A E ++ S + TLL++
Sbjct: 307 GGEALEEVAESTRTRYADEAERFDEADLLRLLTMAADTEDDIKQSPQPRLTLETTLLKMA 366
Query: 801 SM 802
+
Sbjct: 367 QL 368
>gi|255026196|ref|ZP_05298182.1| hypothetical protein LmonocytFSL_07310 [Listeria monocytogenes FSL
J2-003]
Length = 446
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETMERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|47095511|ref|ZP_00233120.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|254912955|ref|ZP_05262967.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|254937336|ref|ZP_05269033.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|386048439|ref|YP_005966771.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
gi|47016121|gb|EAL07045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 1/2a F6854]
gi|258609942|gb|EEW22550.1| DNA polymerase III [Listeria monocytogenes F6900]
gi|293590956|gb|EFF99290.1| DNA polymerase III [Listeria monocytogenes J2818]
gi|345535430|gb|AEO04871.1| DNA polymerase III gamma and tau [Listeria monocytogenes J0161]
Length = 579
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|429727395|ref|ZP_19262167.1| DNA polymerase III, subunit gamma and tau [Peptostreptococcus
anaerobius VPI 4330]
gi|429152553|gb|EKX95371.1| DNA polymerase III, subunit gamma and tau [Peptostreptococcus
anaerobius VPI 4330]
Length = 569
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 122/382 (31%), Positives = 208/382 (54%), Gaps = 19/382 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++Y+P+ FD++IGQ+ ++++L+N I+ ++ YLF G RGTGKTSTAKI + A+N
Sbjct: 3 KALYREYRPMVFDDVIGQDHIIKTLINQINTNNLSHAYLFCGTRGTGKTSTAKILARAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C D KPC C+ C + + + +E+D + +D +R I + P+ S ++K
Sbjct: 63 C-THDGDKPCNVCQSCVSIMDASNLDVIEIDAASNNSVDDIREI-RDTVKYTPNKS-KYK 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L S + A LK LEEPP V+FI TT+ + +P +I SRCQ++ F +I
Sbjct: 120 VYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEPNKIPATILSRCQRFDFKRIGLD 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V +++ I +EN+++ DAL L+A N GS+RD+ ++LD+ LS I+ V +L+
Sbjct: 180 TLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSFSNGPISMEEVLDLL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G +L+ L E + SD A ++K + G D +L+ L S+ ++
Sbjct: 240 GAADPGQLISLAESIIESDVARSMKLVDDYFMWGKDIRLLVEDLTSVFRSMMMMKIFNEA 299
Query: 758 RSLTE---------------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
S+ E + E + L LLSEA +L+ S+ + +++L S
Sbjct: 300 DSVVEFNEEYRNKLLEKSKSIDTEEIIRVLNLLSEAIDKLKQSTNQRMTLEIYIMKLASP 359
Query: 803 HSPDLTQSGSSRRQSSRTTEED 824
+ D ++ R + ED
Sbjct: 360 ATDDSYRAIKKRLEVIERMVED 381
>gi|380696294|ref|ZP_09861153.1| DNA polymerase III subunits gamma and tau [Bacteroides faecis
MAJ27]
Length = 620
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 128/427 (29%), Positives = 222/427 (51%), Gaps = 26/427 (6%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++A+EN+ EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSK 298
Query: 750 -AGTY-------TIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T +I R +A+ L+ L A+KL ++ + R S + TL+Q
Sbjct: 299 DAATLPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSREAVV-------YKRMSGPQYMPQNAVS 850
+ + + D G +Q+ + P++ + V S P + +VS
Sbjct: 359 VAQLTTEGDDVSGGRGPKQTIKPVFTQPAAAQQPQVASAPSAQQTTVHSAPSPVAAPSVS 418
Query: 851 PASLREP 857
++R+P
Sbjct: 419 NTAVRQP 425
>gi|423101273|ref|ZP_17088977.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
gi|370792059|gb|EHN59950.1| DNA polymerase III, subunit gamma and tau, partial [Listeria
innocua ATCC 33091]
Length = 616
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 199/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 41 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 100
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 101 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 158
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 159 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 218
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 219 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 278
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 279 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 338
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 339 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 393
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 394 ---LTQAGQS 400
>gi|333999833|ref|YP_004532445.1| DNA polymerase III subunits gamma/tau [Treponema primitia ZAS-2]
gi|333741482|gb|AEF86972.1| DNA polymerase III, gamma and tau subunit [Treponema primitia
ZAS-2]
Length = 654
Score = 200 bits (508), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 111/293 (37%), Positives = 166/293 (56%), Gaps = 11/293 (3%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
+ K +P FDEL GQ+ V +L ++I GRIA YLF GPRG GKTS A+I + +LNC
Sbjct: 22 ATKRRPKTFDELAGQDFVAATLKSSIETGRIAHAYLFSGPRGCGKTSAARILARSLNCEK 81
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
PCG C C + G S + +E+DG + ++ VR I + P R K+++
Sbjct: 82 GPTVTPCGECPSCREITRGASLDIIEIDGASNNSVNDVRQIKDEVI--FPPQGGRKKIYI 139
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + A LK +EEPP+ +VFIF TT++ VP +I+SRCQ++ F I I
Sbjct: 140 IDEVHMLSQSAFNALLKTIEEPPEYIVFIFATTEVHKVPATIRSRCQQFNFRLIPIETIQ 199
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGVV 700
L+ AE + E +AL IA + GSLRDA T+ DQ++ + I S L+ + +G+V
Sbjct: 200 GILKDTCAEMGIEAEDEALFWIAKESTGSLRDAYTLFDQVASFSEGHIRSQLIRDKLGLV 259
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
+KL L E ++DTA + E++D+G+ + ++D +AG Y
Sbjct: 260 GLDKLNALAESCAANDTAGAFAQIDEILDAGI-------AIEQFVID-LAGYY 304
>gi|167587030|ref|ZP_02379418.1| DNA polymerase III subunits gamma and tau [Burkholderia ubonensis
Bu]
Length = 371
Score = 200 bits (508), Expect = 5e-48, Method: Composition-based stats.
Identities = 116/354 (32%), Positives = 192/354 (54%), Gaps = 19/354 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + D E + A E+ + + LASL+ I + G S
Sbjct: 244 LDQTYMVRLLDALAAGDGTEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPG--S 301
Query: 760 LTE-----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
+ E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 302 VLEEWPEAADLRRFAQTLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|429738100|ref|ZP_19271919.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
gi|429160976|gb|EKY03417.1| DNA polymerase III, subunit gamma and tau [Prevotella
saccharolytica F0055]
Length = 566
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 116/374 (31%), Positives = 204/374 (54%), Gaps = 19/374 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC-V 520
++KY+P+ FD ++GQ+ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPLSFDSVVGQSSLTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCQT 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + + C +C C F +S N E+D + ++ ++ +++ +P ++KVF
Sbjct: 68 PTTEGEACNHCESCEAFNEQRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMTVPGI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++A+EN+ E +AL +I+ ADG +RDA ++ DQ +S IT V E + V
Sbjct: 186 IEHLKSVAAKENITYEEEALTIISEKADGGMRDALSIFDQVVSFCQGNITYQGVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT--YTIGG 757
+ + +++LA + A+ + ++ G D L++ LAS + +++ T+
Sbjct: 246 LDSDNYFNIIDLAYENKVADIMALLNSIITKGFDGGNLINGLASHVRNVLMAKDEVTLTL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+++ + ER L AL++++ + R SS + TL+++ + P
Sbjct: 306 LEVSQRQRERYREQAQKCTTKFLYRALEIMNRCDINYRQSSNKRLLVELTLIEVAQVTQP 365
Query: 806 DLTQSGSSRRQSSR 819
+ SGSS R R
Sbjct: 366 E-DDSGSSGRSPKR 378
>gi|16801912|ref|NP_472180.1| hypothetical protein lin2852 [Listeria innocua Clip11262]
gi|16415387|emb|CAC98078.1| dnaX [Listeria innocua Clip11262]
Length = 579
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 118/370 (31%), Positives = 197/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTEAELERLK---------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + + L +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDEDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGQS 363
>gi|114770074|ref|ZP_01447612.1| DNA polymerase III subunits gamma and tau [Rhodobacterales
bacterium HTCC2255]
gi|114548911|gb|EAU51794.1| DNA polymerase III subunits gamma and tau [alpha proteobacterium
HTCC2255]
Length = 594
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 182/322 (56%), Gaps = 15/322 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +++GQ+ +V++L N RIA ++ G RGTGKT+TA+I + +NCV
Sbjct: 15 LARKYRPETFSDMVGQDAMVRTLKNAFEADRIAHAFVMTGIRGTGKTTTARIIAKGMNCV 74
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSA 573
D T+PCG C C I G+ + ME+D ++ G+ +R I+ H SA A
Sbjct: 75 GVDGTGGPTTEPCGQCEHCLSIIQGRHVDVMEMDAASRTGVGDIREIIDSVHYSA----A 130
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + + A LK LEEPP V FIF TT+I +P ++ SRCQ++
Sbjct: 131 SARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKIPVTVLSRCQRFDLR 190
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSS-L 692
+I+ D++ L+KI+ E + DAL LI ++GS RDA ++LDQ G T++
Sbjct: 191 RIEPDDMMELLKKIAESEEAKISQDALALITRGSEGSARDAISLLDQAIAHGAGETNADQ 250
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL---IMDII 749
V ++G+ ++L+L ++ M + ++ G DP+ ++ LA + I I
Sbjct: 251 VRAMLGLADRGRVLDLFDMIMRGQADKALEELSGQYADGADPLAILRDLAEITHWISVIK 310
Query: 750 AGTYTIGGRSLTEAELERLKHA 771
T+ +++ E ER K A
Sbjct: 311 ISPQTVDDPTVSPDERERGKAA 332
>gi|295105372|emb|CBL02916.1| DNA polymerase III, subunits gamma and tau [Faecalibacterium
prausnitzii SL3/3]
Length = 628
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/250 (40%), Positives = 153/250 (61%), Gaps = 2/250 (0%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L +K++P F++++GQ +V +L N I+ GR+ YLF G RGTGKT+ AKIF+ A+N
Sbjct: 3 RALYRKWRPQRFEDVVGQRAIVTALKNQITAGRVGHAYLFTGVRGTGKTTCAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ PCG C C +G + +E+D + G+D +R L+ +A PSA ++K
Sbjct: 63 CLHPVNGDPCGECEICKGIDNGSLLDVVEMDAASNNGVDDIRD-LRDETAYTPSAC-QYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+I VP +I SRCQ+Y F +I
Sbjct: 121 VYIIDEVHMLSTAAFNALLKTLEEPPAHVIFILATTEIQKVPATILSRCQRYDFTRIGPE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DI R+ I+ EE L + D +LIA ADG+LRDA ++LD + + +I + +V + G
Sbjct: 181 DIARRVEYIAGEEKLELTSDGAELIARLADGALRDALSILDTCAGVTAKIDADVVRRMAG 240
Query: 699 VVSEEKLLEL 708
V L +
Sbjct: 241 VTDRSYLFHI 250
>gi|429725024|ref|ZP_19259885.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 473 str. F0040]
gi|429151486|gb|EKX94354.1| DNA polymerase III, subunit gamma and tau [Prevotella sp. oral
taxon 473 str. F0040]
Length = 631
Score = 200 bits (508), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 196/370 (52%), Gaps = 19/370 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F+ ++GQ+ + +L N I+ G++A YLF GPRG GKT++A+IF+ +NC+
Sbjct: 8 ARKYRPTNFNSVVGQSALTTTLKNAIATGKLAHAYLFCGPRGVGKTTSARIFAKTINCLT 67
Query: 522 TDQT-KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+++ + C +C C F G+S N E+D + +D +R ++ + +P R+KVF
Sbjct: 68 PNESGEACDHCESCVAFNEGRSYNIHELDAASNNSVDDIRELIDQVQ--IPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN+++ GD
Sbjct: 126 IIDEVHMLSQAAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFNRMEVGDT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
V L+ ++ +E + E AL++IA ADG +RDA ++ DQ+ S G IT + + V
Sbjct: 186 VRHLQHVADQEGIQYEEAALNVIARKADGGMRDALSIFDQVASFTGGNITYQATIDNLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + + + + + E++ + E++ G + MS LA+ D++
Sbjct: 246 LDYDYYFAVTDHLLKGEIPESMMKLNEILSKGFEGGHFMSGLAAHFRDLLVSRDAQTLPL 305
Query: 760 LTEAELER--------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L AE R L ALKL ++ + R + + TL+Q+ +
Sbjct: 306 LEVAETVRQQYAEQAQRCSPRFLYRALKLCNDCDMAYRAAPNKRLLVELTLIQVAQILQE 365
Query: 806 DLTQSGSSRR 815
D GS RR
Sbjct: 366 D-EAVGSGRR 374
>gi|220918864|ref|YP_002494168.1| DNA polymerase III subunits gamma and tau [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219956718|gb|ACL67102.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 601
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 166/290 (57%), Gaps = 3/290 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E+ GQ VV++L N + G++A +LF GPRG GKT+TA++ + ALNC
Sbjct: 6 LARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C + G++ + +E+D + G+D VR I++ + A RFKVF
Sbjct: 66 KGPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVK--YRPARDRFKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
V+DE H+L + A LK LEEPP V F+ TTD+ VP +I SRCQ++ F ++ I
Sbjct: 124 VVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQRFDFRRLTLQQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L K++AEE + + P AL L+A A+G +RDA ++LDQ+ + G V E +G
Sbjct: 184 ADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAVAEALGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V + + + D A ++ L D G++ L +L + +++
Sbjct: 244 VDAAAVSRIAGALVGRDGAALLREIEALHDRGLEVKRLAEELVRHLRNVV 293
>gi|407780963|ref|ZP_11128183.1| DNA polymerase III subunits gamma and tau [Oceanibaculum indicum
P24]
gi|407208389|gb|EKE78307.1| DNA polymerase III subunits gamma and tau [Oceanibaculum indicum
P24]
Length = 631
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 109/323 (33%), Positives = 179/323 (55%), Gaps = 16/323 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F E+IGQ +V++L N I+ GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 20 RVLARKYRPQTFAEMIGQEALVRTLRNAIASGRLAHAFMLTGVRGVGKTTTARILARALN 79
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C D PCG C C + + +E+D ++ G++ +R +++ + SA
Sbjct: 80 CTGQDGQGGPTVSPCGVCEACRGIAEDRHPDVLEMDAASRTGVNDIRELIEGVRYRPVSA 139
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 140 --RYKIYIIDEVHMLSTAAFNALLKTLEEPPSDVKFIFATTEIRKVPVTVLSRCQRFDLR 197
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++ + I+ +E + +E AL L+A ADGS+RD ++LDQ ++L G S+
Sbjct: 198 RVDLDVLSGHFAAIAQKEGIGIEEGALRLVARAADGSVRDGLSILDQAIALAGNDAESAT 257
Query: 693 VNE-----LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL--- 744
V E ++G+ ++ L+L + M D ++R L G DP+V++ L L
Sbjct: 258 VTEESVKGMLGLADRDQALDLFDAVMRGDPTAALERLAGLHGVGADPVVIVQDLLELTHF 317
Query: 745 IMDIIAGTYTIGGRSLTEAELER 767
+ + + L++AEL R
Sbjct: 318 LTRLKVAPAAVAASGLSDAELAR 340
>gi|392375981|ref|YP_003207814.1| DNA polymerase III subunits gamma and tau [Candidatus
Methylomirabilis oxyfera]
gi|258593674|emb|CBE70015.1| DNA polymerase III, subunits gamma and tau [Candidatus
Methylomirabilis oxyfera]
Length = 601
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 124/350 (35%), Positives = 196/350 (56%), Gaps = 34/350 (9%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+++++P FDE++GQ V Q+L N I++ R+A LF GPRG GKT+TA+I + ALNC
Sbjct: 6 LARRWRPQNFDEVVGQRPVTQTLKNAIAKDRVAHALLFAGPRGVGKTTTARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PC C CN +G+S + +E+DG + +G+D VR L+ + PS + KV
Sbjct: 66 RGRTSEPCSECASCNAIATGRSVDCLEIDGASNRGIDEVRE-LREIVRYAPSRD-KCKVI 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP V+FI TT +P +I SRCQ++ F ++ +I
Sbjct: 124 IIDEVHMLTEPAFNALLKTLEEPPPGVIFILATTHAHKIPPTILSRCQRHDFRRLGQTEI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ RL++I+ EE V A+ IA A+GSLRDA+++LDQ ++ G ++ V ++G+
Sbjct: 184 LPRLQQIACEEGAAVSDGAMKAIARAAEGSLRDAQSLLDQAIAYSGDAVSEEDVAVVLGL 243
Query: 700 VSEEKLLELLELAMSSDTA---------------------ETVKRARELMDSGV--DPMV 736
V E L + + + D++ E + R+LM S DP
Sbjct: 244 VEGELLAQTTQAIIERDSSSALAVVESLSARGDDLQRFCQELLAHLRDLMVSKASKDPAP 303
Query: 737 LMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
L+ QL+ + +D I +LT A+LE + ++LS AE +R +S
Sbjct: 304 LL-QLSRVPLDTIRAQAA----ALTLADLETV---FQVLSRAEFDMRRAS 345
>gi|289432471|ref|YP_003462344.1| DNA polymerase III subunits gamma/tau [Dehalococcoides sp. GT]
gi|288946191|gb|ADC73888.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp. GT]
Length = 570
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 162/274 (59%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 69
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK PS + +KV+
Sbjct: 70 NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA-NYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 128 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E +NVEP+AL LIA +A GS RD E +L Q+ + G I+ S V +G+
Sbjct: 188 TRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D +K ++ G+D
Sbjct: 248 SGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|381200822|ref|ZP_09907954.1| DNA polymerase III subunits gamma and tau [Sphingobium yanoikuyae
XLDN2-5]
Length = 546
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 175/314 (55%), Gaps = 16/314 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRNFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C G+ + +E+D + G+D VR I++ + +
Sbjct: 69 CIGPDGQGGPTIDPCGVCEPCMAIAEGRHIDVVEMDAASHTGVDDVREIIEAVRYA--AV 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL---SLLGK---R 687
+I + + E + EPDAL LIA A+GS RD ++LDQ + +G+
Sbjct: 187 RIPAEMLAGHFAHVVEAEQVAAEPDALSLIAQAAEGSARDGLSILDQAIAHAEMGEGEPM 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
+T++ V E++G+ LL L + DTA + R+ GV+P+ LM L L+
Sbjct: 247 VTAAQVREMLGLSDRGSTRRLLGLLLEGDTAALLGGVRDQYALGVEPLSLMRGLLELVHA 306
Query: 748 IIAGTYTIGGRSLT 761
+ T GR +
Sbjct: 307 V---TLVKAGRDIA 317
>gi|166033190|ref|ZP_02236019.1| hypothetical protein DORFOR_02912 [Dorea formicigenerans ATCC
27755]
gi|166027547|gb|EDR46304.1| DNA polymerase III, subunit gamma and tau [Dorea formicigenerans
ATCC 27755]
Length = 522
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 137/434 (31%), Positives = 226/434 (52%), Gaps = 38/434 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 2 ALYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + + A P+ R+KV
Sbjct: 62 EHPVDGSPCGECAVCKAIAAGNSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-RYKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 120 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQRYDFKRISIET 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I ARL+++ +E +VE A+ IA DGS+RDA ++LDQ + +G+++T V E++
Sbjct: 180 ISARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYIGQKLTYDHVLEVL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL + D V+ EL+ G + +SQL++ L++
Sbjct: 240 GAVDTEVFSRLLRKILDRDVHSVVEIVDELVMQGRE----LSQLSADFTWYLRNLLLVRS 295
Query: 747 -----DIIAGTYTIGGRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D++ + R EA++ + L +++ S+ QL+ S+++ L++
Sbjct: 296 SDDMEDVLDVSSENLARLKEEAQMIEDDALIRYIRVFSDLTSQLKYSTQKRVMLEVALIK 355
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEED------PSSTSREAVVYKRMSGPQYMPQNAVSPA 852
L P + + + R EE + +RE +VY ++GP+ Q
Sbjct: 356 LC---RPAMETNPDTLLDRLRAIEEKLENGDFMENAARERIVY--VNGPEGAEQEPKKKP 410
Query: 853 SLREPVNGNSRHLG 866
L E +N + + +
Sbjct: 411 ELPEALNEDVKQVA 424
>gi|395785557|ref|ZP_10465289.1| DNA polymerase III, subunit gamma and tau [Bartonella tamiae Th239]
gi|423717544|ref|ZP_17691734.1| DNA polymerase III, subunit gamma and tau [Bartonella tamiae Th307]
gi|395425104|gb|EJF91275.1| DNA polymerase III, subunit gamma and tau [Bartonella tamiae Th239]
gi|395426944|gb|EJF93060.1| DNA polymerase III, subunit gamma and tau [Bartonella tamiae Th307]
Length = 653
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 169/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFDDLIGQEPMVRTLTNAFEAGRIAQAWMLTGVRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
KP C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTDTIDKPTIALNVMGEHCQAIMEGRHVDIIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIKKVPITVLSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I+ ++ L +I +E L+ E +AL +IA +GS+RDA ++LDQ G+ + + V
Sbjct: 189 IESKTLIDHLSQIIEKEQLDAEEEALAMIARAGEGSVRDALSILDQAIAHGEGHVKAQTV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E MS D ++ R D+G DP+V++ +LA
Sbjct: 249 RSMLGLADRAQVIDLFEKIMSGDIGPALQNMRNQYDAGADPLVILGELADF 299
>gi|317498613|ref|ZP_07956906.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
gi|291558496|emb|CBL37296.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
bacterium SSC/2]
gi|316894100|gb|EFV16289.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 534
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 183/325 (56%), Gaps = 8/325 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E+ GQ+ +V++L N + GRI YLF G RGTGKT+ AKI + A+NC
Sbjct: 5 ALYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C C G S N +E+D + G+D +R I + + A+ ++KV
Sbjct: 65 EHPVDGEPCGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYS--PATGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITAAT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I +L + +E+++ E AL+ +A ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 IKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAFYLGEKLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V + +LL++ +S D + ++ G + SQ + + + +G
Sbjct: 243 GTVDIQVYSDLLDMILSQDINGVMDLLEDVARQGRE----WSQFITDFLWYLRNLLLVGQ 298
Query: 758 RSLTEAELERLKHALKLLSEAEKQL 782
+ E LE LKLL E +Q+
Sbjct: 299 GNAAEEALEVSTDQLKLLQEKAQQV 323
>gi|197124085|ref|YP_002136036.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp. K]
gi|196173934|gb|ACG74907.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp. K]
Length = 601
Score = 199 bits (507), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 166/290 (57%), Gaps = 3/290 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E+ GQ VV++L N + G++A +LF GPRG GKT+TA++ + ALNC
Sbjct: 6 LARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C + G++ + +E+D + G+D VR I++ + A RFKVF
Sbjct: 66 KGPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVK--YRPARDRFKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
V+DE H+L + A LK LEEPP V F+ TTD+ VP +I SRCQ++ F ++ I
Sbjct: 124 VVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQRFDFRRLTLQQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L K++AEE + + P AL L+A A+G +RDA ++LDQ+ + G V E +G
Sbjct: 184 ADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAVAEALGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V + + + D A ++ L D G++ L +L + +++
Sbjct: 244 VDAAAVSRIAGALVGRDGAALLREIEALHDRGLEVKRLAEELVRHLRNVV 293
>gi|417836966|ref|ZP_12483206.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
gi|338762645|gb|EGP13912.1| DNA polymerase III subunit gamma and tau [Lactobacillus johnsonii
pf01]
Length = 602
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ +
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L ++ +T+ ++ L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTV 290
>gi|147669204|ref|YP_001214022.1| DNA polymerase III subunits gamma and tau [Dehalococcoides sp.
BAV1]
gi|146270152|gb|ABQ17144.1| DNA polymerase III, subunits gamma and tau [Dehalococcoides sp.
BAV1]
Length = 570
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 162/274 (59%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 69
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK PS + +KV+
Sbjct: 70 NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA-NYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 128 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E +NVEP+AL LIA +A GS RD E +L Q+ + G I+ S V +G+
Sbjct: 188 TRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D +K ++ G+D
Sbjct: 248 SGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|383762745|ref|YP_005441727.1| DNA polymerase III subunit gamma and tau [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381383013|dbj|BAL99829.1| DNA polymerase III gamma and tau subunit [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 557
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 160/273 (58%), Gaps = 3/273 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++ FDE++GQ V Q+L N + GR+A YLF GPRGTGKTSTA+I + ALNC
Sbjct: 4 ALYRKWRSQTFDEVVGQEHVTQTLKNALRDGRVAHAYLFAGPRGTGKTSTARILAKALNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
A + +PC C C G+ + +E+D + +D +R + + + G + R+K+
Sbjct: 64 TAPEAERPCNRCPTCQAITEGRMIDLIEIDAASNNSVDDIRELREKV--GFRPSEGRYKI 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP FI TT+ +P ++ SRCQ++ F +I +
Sbjct: 122 YIIDEVHMLSGSAFNALLKTLEEPPPHARFILATTEPHKIPATVISRCQRFDFRRIPASE 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I L+ I E + EPDAL +IA +A G +RDA ++LDQ+ G+ R+T V +++G
Sbjct: 182 IARHLQHIVEAEGFDAEPDALLMIARSAQGCMRDAVSLLDQMLSFGQDRVTLIQVQQVLG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
V+ + + E + +TA+ ++ L+ G
Sbjct: 242 AVNTQTVGEFVAALAERNTAKGLQLIHRLVLDG 274
>gi|320529756|ref|ZP_08030834.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis
F0399]
gi|320137995|gb|EFW29899.1| DNA polymerase III, subunit gamma and tau [Selenomonas artemidis
F0399]
Length = 617
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 120/331 (36%), Positives = 184/331 (55%), Gaps = 16/331 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +L+GQ + ++L ++ G+ + YLF GPRGTGKTSTAKI + +LNC
Sbjct: 5 ALYRRWRPTSFADLVGQEHISRTLSRAVTSGQTSHAYLFTGPRGTGKTSTAKILARSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S + E+D + +G+D +R L+ P+ R K+
Sbjct: 65 AQGPTLTPCGQCESCRAIAEGSSMDVFEIDAASNRGIDEIRD-LRETVKFAPTEG-RCKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ VP +IQSRCQ+Y F++I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPPSVLFILATTEPHKVPATIQSRCQRYDFHRITVAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL + E + DAL +IA ADG +RDA ++LDQ S L + +T+ V E +G
Sbjct: 183 IRERLSYVCRESGIAANDDALAIIAAQADGGMRDALSILDQCSALAEGTLTAEQVQESLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA-SLIMDIIAGTYTIGG 757
+V +E++ +L D + + EL+ SG + + +LA +IAG +GG
Sbjct: 243 LVGKERIAQLAVQIADKDGSGLLAGLSELLQSGRELNRIFVELALHFRALMIAG---VGG 299
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSER 788
S AE +EA +QLR + R
Sbjct: 300 ASFA-AEFSG--------TEAAEQLRADAAR 321
>gi|452963338|gb|EME68413.1| DNA polymerase III subunits gamma and tau [Magnetospirillum sp.
SO-1]
Length = 595
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 169/292 (57%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F LIGQ +V++L N I GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPTDFAGLIGQEAMVRTLSNAIRTGRLAHAFVLTGVRGVGKTTTARIIARALN 70
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C + + +E+D ++ G++ +R I++ + SA
Sbjct: 71 CVGPDGKGGPTIDPCGTCEHCRAIAEDRHVDILEMDAASRTGVNDIREIIEGVRYRPTSA 130
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
RFKV++IDE H+L + + A LK LEEPP+ V F+F TT+I +P ++ SRCQ++
Sbjct: 131 --RFKVYIIDEVHMLSTAAFNALLKTLEEPPEHVKFVFATTEIRKIPVTVLSRCQRFDLR 188
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+++ + I+A+E ++P AL LIA ADGS+RD ++LDQ +S ++ +
Sbjct: 189 RVEMEVLARHFEGIAAKEQAEIDPAALKLIARAADGSVRDGLSLLDQAISHGAGAVSEAQ 248
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ ++ +LL+ M + A + + +G DP V++ + L
Sbjct: 249 VRDMLGLADRARVFDLLDAVMKGEVAAALDQITAQYAAGADPAVVLQDMLEL 300
>gi|293400034|ref|ZP_06644180.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306434|gb|EFE47677.1| DNA polymerase III, gamma and tau subunits [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 601
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 19/368 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ +VQ+L + + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 KALYRTYRPNSFDEVYGQKHIVQTLKHAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + TK CG C C G + +E+D + G++ VR +++ + ++K
Sbjct: 64 C-TDEHTKACGKCENCIAVQEGNHPDIIEIDAASNNGVEEVRTLIEKVKYA--PLKGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F KI
Sbjct: 121 VYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKIPRN 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI RLR + E L E + + +IA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 181 DIENRLRDVLQGEQLTCEDEVIRIIAQLADGGLRDALSILDQCIAYAQNDIKVHHINEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--I 755
G+ + + LE+++ + + + L++ G+D L L ++ + I YT I
Sbjct: 241 GITTITEKLEIIDAIIGKEAVNLLNIVDTLIEKGIDIKRLTVDLIEILKESIIFEYTKDI 300
Query: 756 GGRSLTEAE-----LERLKH-----ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G + E +ERL + LL E + R ++ ++F LLQ M
Sbjct: 301 GLLRILNGEEVNHMIERLSRKKRFDMIHLLMETYDKYRGAANVGSYFEVCLLQ---MLDD 357
Query: 806 DLTQSGSS 813
D+ Q S
Sbjct: 358 DVIQKNES 365
>gi|373453205|ref|ZP_09545101.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. 3_1_31]
gi|371964044|gb|EHO81582.1| DNA polymerase III, subunit gamma and tau [Eubacterium sp. 3_1_31]
Length = 601
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 19/368 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ +VQ+L + + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 KALYRTYRPNSFDEVYGQKHIVQTLKHAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + TK CG C C G + +E+D + G++ VR +++ + ++K
Sbjct: 64 C-TDEHTKACGKCENCIAVQEGNHPDIIEIDAASNNGVEEVRTLIEKVKYA--PLKGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F KI
Sbjct: 121 VYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKIPRN 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI RLR + E L E + + +IA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 181 DIENRLRDVLQGEQLTCEDEVIRIIAQLADGGLRDALSILDQCIAYAQNDIKVHHINEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--I 755
G+ + + LE+++ + + + L++ G+D L L ++ + I YT I
Sbjct: 241 GITTITEKLEIIDAIIDKEAVNLLNIVDTLIEKGIDIKRLTVDLIEILKESIIFEYTKDI 300
Query: 756 GGRSLTEAE-----LERLKH-----ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G + E +ERL + LL E + R ++ ++F LLQ M
Sbjct: 301 GLLRILNGEEVNHMIERLSRKKRFDMIHLLMETYDKYRGAANVGSYFEVCLLQ---MLDD 357
Query: 806 DLTQSGSS 813
D+ Q S
Sbjct: 358 DVIQKNES 365
>gi|363900310|ref|ZP_09326816.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|395209777|ref|ZP_10398805.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
gi|361957164|gb|EHL10476.1| hypothetical protein HMPREF9625_01476 [Oribacterium sp. ACB1]
gi|394704762|gb|EJF12294.1| DNA polymerase III, subunit gamma and tau [Oribacterium sp. ACB8]
Length = 525
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 119/387 (30%), Positives = 209/387 (54%), Gaps = 34/387 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++ FD+++GQ+ + +S N +S GR+ YLF G RGTGKTS AKI + A+NC
Sbjct: 5 ALYRKWRSKDFDDIVGQDAITKSFKNQVSSGRVGHAYLFCGTRGTGKTSLAKILARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C+ C +S S N E+D + G+D +R I + + P ++KV
Sbjct: 65 EHPINGNPCNECKNCKSILSNTSINVYEMDAASNNGVDDIRLIREQVE--YPPVDMKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + AFLK LEEPP+ V+FI TT+ + +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSPSAFNAFLKTLEEPPEYVIFILATTEPNALPITILSRCQRYDFKRISVET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ---------------LSLL 684
I RL I+ EEN+ + +ALD IA DGS+RDA ++LDQ L +L
Sbjct: 183 IAKRLEMITKEENIAISEEALDYIARMGDGSMRDAVSLLDQCASYDFQQEISYEDALKVL 242
Query: 685 GKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPM-----VLMS 739
G + +++ +E++ + ++ + ++E + A +++ +EL D + ++++
Sbjct: 243 GA-VDTAVFSEMISALRQKNIQAVME-----NIATVLEQGKELSQYVSDLLSYFRNMMLA 296
Query: 740 QLASLIMDIIAGTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATL 796
+ + + ++ + R L +AE +E + ++LLSE +Q R ++++ L
Sbjct: 297 KSVNNLQGLVDLSEENKNRLLKDAESMPMEEILRGIRLLSELLQQFRYANQKRVLLETCL 356
Query: 797 LQLGSMHSPDLTQSGSSRRQSSRTTEE 823
++L P+ + + +Q + EE
Sbjct: 357 MKLA---YPETEGTADALQQRMQELEE 380
>gi|406984180|gb|EKE05281.1| hypothetical protein ACD_19C00370G0003, partial [uncultured
bacterium]
Length = 466
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 174/293 (59%), Gaps = 4/293 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P F+++ GQ ++Q++ N +S+ A YLF GPRG GKT+TA++ + A+NC
Sbjct: 2 SLYRKYRPQNFEQVAGQVHIIQTITNQLSKNNTAHAYLFSGPRGIGKTTTARLIAKAVNC 61
Query: 520 VATDQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
K PC C C G+S + +E+D + G+D VR + + PS SP F
Sbjct: 62 TERKDKKFEPCNSCSSCTSITEGRSIDVIEIDAASNTGVDTVRENIIENAQFKPSISP-F 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF+IDE H+L + + A LK LEEPP+ ++FI TT++ +P +I SRCQ++ F KI
Sbjct: 121 KVFIIDEIHMLSTSAFNALLKTLEEPPEYIIFILATTELHKLPDTIISRCQRFEFKKIDA 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNEL 696
+I L +I +E L VE + L+ I ++G LRDA ++LDQL+ G K+IT+ + N
Sbjct: 181 EEIKNHLIEIVKKEKLIVEDEVLNRIIKKSEGHLRDAISLLDQLTSSGEKKITTEMANMF 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ + E +LE E +T+ ++ E++++G +P + L L+ +I+
Sbjct: 241 LPASNIEDILEFTENLFQKNTSSCLQNLNEIIENGSNPKQMTLNLLDLLRNIL 293
>gi|398383887|ref|ZP_10541947.1| DNA polymerase III, subunit gamma/tau [Sphingobium sp. AP49]
gi|397723912|gb|EJK84394.1| DNA polymerase III, subunit gamma/tau [Sphingobium sp. AP49]
Length = 538
Score = 199 bits (507), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 171/298 (57%), Gaps = 13/298 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRNFRELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C G+ + +E+D + G+D VR I++ + +
Sbjct: 69 CIGPDGQGGPTIDPCGVCEPCVAIAEGRHIDVVEMDAASHTGVDDVREIIEAVRYA--AV 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSKNAFNALLKTLEEPPAHVKFLFATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL---SLLGK---R 687
+I + + E + EPDAL LIA A+GS RD ++LDQ + +G+
Sbjct: 187 RIPAEMLAGHFAHVVEAEQVAAEPDALSLIAQAAEGSARDGLSILDQAIAHAEMGEGEPM 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+T++ V +++G+ + LL L + DTA + R+ GV+P+ LM L L+
Sbjct: 247 VTAAQVRDMLGLSDRGSVRRLLGLLLEGDTAILLGAVRDQYALGVEPLALMRGLLELV 304
>gi|167767544|ref|ZP_02439597.1| hypothetical protein CLOSS21_02063 [Clostridium sp. SS2/1]
gi|429763062|ref|ZP_19295425.1| DNA polymerase III, subunit gamma and tau [Anaerostipes hadrus DSM
3319]
gi|167710836|gb|EDS21415.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. SS2/1]
gi|429179850|gb|EKY21085.1| DNA polymerase III, subunit gamma and tau [Anaerostipes hadrus DSM
3319]
Length = 531
Score = 199 bits (506), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 114/325 (35%), Positives = 183/325 (56%), Gaps = 8/325 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E+ GQ+ +V++L N + GRI YLF G RGTGKT+ AKI + A+NC
Sbjct: 2 ALYRKFRPTRFSEVKGQDHIVKTLENQMRTGRIGHAYLFCGTRGTGKTTVAKILAKAVNC 61
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PCG C C G S N +E+D + G+D +R I + + A+ ++KV
Sbjct: 62 EHPVDGEPCGECEVCKAIAEGSSMNVIEIDAASNNGVDNIREIKEQVQYS--PATGKYKV 119
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 120 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQRYDFHRITAAT 179
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I +L + +E+++ E AL+ +A ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 180 IKKQLSDLMEQEHVDTEDKALEYVARMADGSMRDALSLLDQCIAFYLGEKLTYDNVLEVL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V + +LL++ +S D + ++ G + SQ + + + +G
Sbjct: 240 GTVDIQVYSDLLDMILSQDINGVMDLLEDVARQGRE----WSQFITDFLWYLRNLLLVGQ 295
Query: 758 RSLTEAELERLKHALKLLSEAEKQL 782
+ E LE LKLL E +Q+
Sbjct: 296 GNAAEEALEVSTDQLKLLQEKAQQV 320
>gi|452203428|ref|YP_007483561.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
DCMB5]
gi|452110487|gb|AGG06219.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
DCMB5]
Length = 570
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 112/274 (40%), Positives = 162/274 (59%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 69
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK PS + +KV+
Sbjct: 70 NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA-NYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 128 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E +NVEP+AL LIA +A GS RD E +L Q+ + G I+ S V +G+
Sbjct: 188 TRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D +K ++ G+D
Sbjct: 248 SGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|393724507|ref|ZP_10344434.1| DNA polymerase III gamma and tau subunit [Sphingomonas sp. PAMC
26605]
Length = 555
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 11/292 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +V +L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 24 RVLARKYRPQTFGELIGQDAMVTTLGNAIRRGRLAHAFLLTGVRGVGKTSTARLLAKALN 83
Query: 519 CVATDQT-----KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T PCG C C G+ + +E+D + G+D +R ++ ++ + +
Sbjct: 84 CIGPDGTGGPTIDPCGVCEPCVGIAEGRHIDVIEMDAASHTGVDDMRAVID--ASRMTAF 141
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+K+++IDE H+L + A LK LEEP + V F+ TT+++ VP ++ SRCQ++
Sbjct: 142 VARYKIYIIDEVHMLSKNAFNALLKTLEEPAEGVKFVLATTEVNKVPVTVLSRCQRFDLR 201
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ----LSLLGKRIT 689
+I + ++S E + EP+AL LIA A+GS RD ++LDQ + G ++
Sbjct: 202 RIPAEKLAEHFARVSKAEGIEAEPEALGLIARAAEGSARDGLSILDQAIAHADMEGGAVS 261
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
S+ V +++G+ + +L+ L ++SD + R D GVDP+ ++ L
Sbjct: 262 SAAVRDMLGLSDRGAIRDLMALLLASDGPGALAALRRQYDLGVDPLGVLRGL 313
>gi|298386276|ref|ZP_06995832.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
gi|298260653|gb|EFI03521.1| DNA polymerase III, gamma/tau subunit [Bacteroides sp. 1_1_14]
Length = 619
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 128/415 (30%), Positives = 219/415 (52%), Gaps = 20/415 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++A+EN+ EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVAAKENITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENRVSDALLLFNDVLNKGFDGSHFITGLSSHCRDLLVSK 298
Query: 750 -AGTY-------TIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T +I R +A+ L+ L A+KL ++ + R S + TL+Q
Sbjct: 299 DAATLPLLEVGASIRQRYQEQAQKCPLQFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSP-DLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPA 852
+ + + D G +Q+ + P++ +++ V S Q A SPA
Sbjct: 359 VAQLTTEGDDVSGGRGPKQTIKPVFTQPAA-AQQPQVASAPSAQQTTVHTAPSPA 412
>gi|182625401|ref|ZP_02953174.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
str. JGS1721]
gi|177909398|gb|EDT71850.1| DNA polymerase III subunit gamma/tau [Clostridium perfringens D
str. JGS1721]
Length = 547
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 226/442 (51%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q++ EE S S E K ++ Q QNA+
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQANTNLEEVKSQVSNETSNNKTLNNKQ---QNAIK 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|384210233|ref|YP_005595953.1| DNA polymerase III subunits gamma and tau [Brachyspira intermedia
PWS/A]
gi|343387883|gb|AEM23373.1| DNA polymerase III, gamma and tau subunits [Brachyspira intermedia
PWS/A]
Length = 525
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 217/390 (55%), Gaps = 25/390 (6%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 ENYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ + V +I+SRCQ+Y F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS+
Sbjct: 181 GIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSAD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
VN +VG + + E ++ +S D + ++L + VDP ++ + +++ I
Sbjct: 241 VNAVVGGNNFSFVKEFFDIMISGDKKTYFEFVKKLFEESVDPRTFINSIIEYIRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
+G I +TE E + LK L + E+++R +S T F +L
Sbjct: 301 SGIDDIKLLEITENERDDLKVFANHYSDDEIERILDYILSTEERIRSASNTRTIFEMRML 360
Query: 798 QLGSMHSPDLTQSG---SSRRQSSRTTEED 824
L +++ +L + SS Q++ + ED
Sbjct: 361 LL--LNTDNLIRPVDIISSNMQAAVSVNED 388
>gi|326802965|ref|YP_004320783.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
gi|326651277|gb|AEA01460.1| DNA polymerase III, subunit gamma and tau [Aerococcus urinae
ACS-120-V-Col10a]
Length = 641
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 100/312 (32%), Positives = 182/312 (58%), Gaps = 5/312 (1%)
Query: 450 EEEG--VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKT 507
E EG + + ++L +K++P F +++GQ V ++L N I++ + + YLF GPRGTGKT
Sbjct: 3 ENEGREAMMSYQALYRKWRPQIFADIVGQEAVSRTLKNAINQDKTSHAYLFNGPRGTGKT 62
Query: 508 STAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
S AKIF+ A+NC + +PC C C G+ + +E+D + G++ +R I +
Sbjct: 63 SAAKIFAKAINCPNQNDGEPCNECHLCQAITEGRLADVIEIDAASNNGVEEIRDIRDKVR 122
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
A+ +KV++IDE H+L + + A LK LEEPP RV+FI TT+ +P ++ SR
Sbjct: 123 YAPTEAN--YKVYIIDEVHMLSTGAFNALLKTLEEPPSRVIFILATTEAHKIPATVISRT 180
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGK 686
Q++ F ++ + I R+ I +E + E +AL+LIA +A+G +RDA ++LDQ +S
Sbjct: 181 QRFDFKRLSNQAIKDRMAYILGQEGVTYEAEALELIAQDANGGMRDALSLLDQVISFSQG 240
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
IT+++ ++ G++S+E+ + +E DT + + R+++ +G + + ++
Sbjct: 241 EITTAMTRQVTGILSDEQKIAYVEALGQGDTDQALAVLRQILQAGREASRFVEEMLLFTR 300
Query: 747 DIIAGTYTIGGR 758
D++ + G +
Sbjct: 301 DLLLAKQSQGAK 312
>gi|254931024|ref|ZP_05264383.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|405751049|ref|YP_006674515.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
ATCC 19117]
gi|417318743|ref|ZP_12105308.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|293582570|gb|EFF94602.1| DNA polymerase III [Listeria monocytogenes HPB2262]
gi|328469564|gb|EGF40505.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1-220]
gi|404220249|emb|CBY71613.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
ATCC 19117]
Length = 579
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 194/356 (54%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
R+L + A+ ++ +K+L+ A++Q+R S+ + L+QL
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQL 357
>gi|429206167|ref|ZP_19197435.1| DNA polymerase III subunits gamma and tau [Rhodobacter sp. AKP1]
gi|428190888|gb|EKX59432.1| DNA polymerase III subunits gamma and tau [Rhodobacter sp. AKP1]
Length = 582
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I + LNCV
Sbjct: 12 LARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCV 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGTGGPTTEPCGQCEPCRAIAEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ ++A L +++ +E + DAL LI A+GS+RDA +++DQ G T+ V
Sbjct: 190 EPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M + A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGEAAAALAELSSQYADGADPMAVLRDLAEI 299
>gi|452944508|ref|YP_007500673.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
HO]
gi|452882926|gb|AGG15630.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
HO]
Length = 379
Score = 199 bits (506), Expect = 8e-48, Method: Composition-based stats.
Identities = 109/314 (34%), Positives = 178/314 (56%), Gaps = 9/314 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++KY+P F ELIGQ I L N +I Y+F G +GTGKT+TA+IF+ LNC+
Sbjct: 6 FARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVLNCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PC C C G + +E+D + +G+D +R + K ++ LP ++KV+
Sbjct: 66 NPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAV-KEGASYLPMQG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK +EEPP ++FI TT+ D + +IQSRCQK +F++ +I
Sbjct: 124 IIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASKENI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGV 699
LR+I+ +EN+ ++ +ALD+++ AD S+RDA ++LDQ S G ++T +V + G
Sbjct: 184 KTYLRRIATQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSMFGP 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V + + + LEL + SDT E + + + G + + + I +I+ T
Sbjct: 244 VDKASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKAFAT----- 298
Query: 760 LTEAELERLKHALK 773
EAE E K L+
Sbjct: 299 -GEAEEEFYKKMLE 311
>gi|188581065|ref|YP_001924510.1| DNA polymerase III subunits gamma and tau [Methylobacterium populi
BJ001]
gi|179344563|gb|ACB79975.1| DNA polymerase III, subunits gamma and tau [Methylobacterium populi
BJ001]
Length = 623
Score = 199 bits (506), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 109/293 (37%), Positives = 167/293 (56%), Gaps = 9/293 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N S RI ++ G RG GKT+TA+I + LN
Sbjct: 31 RVLARKYRPQTFDDLIGQGAMVRTLANAFSANRIPQAWMLTGVRGVGKTTTARILARGLN 90
Query: 519 CVATDQ--TKPCGYCRE----CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
V T Q T P E C + + + +E+D + G+D VR I+ + S
Sbjct: 91 YVRTGQPDTGPTVSMPELGQHCQAIMESRHMDVLEMDAASHTGIDDVRGIIDGIRYAPVS 150
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
A R+KV+++DE H+L K + AFLK LEEPP F+F TT+I VP +I SRCQ++
Sbjct: 151 A--RYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSRCQRFDL 208
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSS 691
+++ + A L+KI A E + E +AL + A+GS+RDA ++LDQ G +T++
Sbjct: 209 RRVEADVLSAHLKKICAAEGVEAEDEALAAVTRAAEGSVRDALSLLDQAIAHGAGAVTAA 268
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ ++++L E AM D R D+G DP V++S LA
Sbjct: 269 GVRDMLGLADRSRIVDLFEAAMRGDIPAAFAEIRAQYDAGADPAVVLSDLAGF 321
>gi|347733290|ref|ZP_08866351.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. A2]
gi|347517887|gb|EGY25071.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio sp. A2]
Length = 672
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 166/309 (53%), Gaps = 7/309 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ +Y+P F E+ GQ V L + R+AP YLF G RG GKT+ A+I + ALNC
Sbjct: 6 LTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C +C + G + +E+DG + +G++ R + + + G R+KVF
Sbjct: 66 KAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAI--GYAPMEGRYKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP RV F+ TT+ P +I SRCQ + F ++ + ++
Sbjct: 124 IIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIVSRCQHFTFKRLPENEL 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
A L + E + +P A+ LIA A GS+RD+ ++L Q L+L G R+T ++G+
Sbjct: 184 EAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGVLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTYTI 755
+E E+++ S D R+L+D GVD + +LAS L M AG +
Sbjct: 244 AGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGEAAL 303
Query: 756 GGRSLTEAE 764
L E E
Sbjct: 304 PALDLPEEE 312
>gi|390933731|ref|YP_006391236.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569232|gb|AFK85637.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 529
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 203/364 (55%), Gaps = 18/364 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQN +V++L N I GRI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPRSFGEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C+ C + + +E+D + +D VR + ++ PS S ++K
Sbjct: 63 CPNSVDGEPCNKCQICQSANNNSLMDIIEIDAASNNSVDDVRELRDNIIYA-PS-SCKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPPQ +FI TT+ + +P +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQRFDFKRISAK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
I ++KI+ + +N++ A+ LIA + +GS+RDA ++L+Q + +T V +++G
Sbjct: 181 VISQNIKKIAEDSQINIDGRAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDILG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V+++ L L+ D ET++ +LM G+D L+ L S + D+I T G
Sbjct: 241 TVNDDTLFALVRSLSDRDGKETIRLIDKLMLYGIDVNNLVKALLSFLRDVIVYK-TCGAE 299
Query: 759 S--LTEAE------------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH- 803
S + E E + L +AL+ L + + ++R + TLL+L +
Sbjct: 300 SEEILETEVNDTIKDASLFDMAFLSNALEKLMDLQGKIRYAQSPRIMLEITLLKLINPEI 359
Query: 804 SPDL 807
SPD+
Sbjct: 360 SPDI 363
>gi|417015746|ref|ZP_11946931.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
gi|328462873|gb|EGF34722.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
MTCC 5463]
Length = 595
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 201/372 (54%), Gaps = 16/372 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL +IA ADG +RDA ++LDQ LS +R+ E+
Sbjct: 182 DLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL----IMDIIAGTY 753
G ++E + ++L + + +K A+ + G ++ +L + +M I AG
Sbjct: 242 GFAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDD 301
Query: 754 TIGGRSLTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G L+E ++++K + L ++A LR ++++ L++ GS
Sbjct: 302 R-QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLRYTNQQQIPLEVFLVEAGSKQEE 360
Query: 806 DLTQSGSSRRQS 817
+ QS ++ Q+
Sbjct: 361 QVAQSSAAPVQA 372
>gi|327313805|ref|YP_004329242.1| DNA polymerase III subunit gamma and tau [Prevotella denticola
F0289]
gi|326944679|gb|AEA20564.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
F0289]
Length = 600
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 199/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
++ L+ ++ +EN+ E +AL +IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 ISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LA+ + E + ++++ G D L++ LAS + +++
Sbjct: 246 LDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLPL 305
Query: 760 LTEAELERLKH--------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L ++ +RL++ AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 DLTQSGSSR 814
D S R
Sbjct: 366 DDDVPASGR 374
>gi|325859977|ref|ZP_08173104.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
gi|325482503|gb|EGC85509.1| DNA polymerase III, subunit gamma and tau [Prevotella denticola
CRIS 18C-A]
Length = 600
Score = 199 bits (506), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 113/369 (30%), Positives = 199/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTVDGEACNECESCKAFAEGRSYNIFELDAASNNSVENIKSLMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
++ L+ ++ +EN+ E +AL +IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 ISHLKNVAEKENIQYEEEALAIIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LA+ + E + ++++ G D L++ LAS + +++
Sbjct: 246 LDADNYFNIVSLALENKVNEIMVLLNDVLNKGFDGGHLVNGLASHVRNVLMAKDAQTLPL 305
Query: 760 LTEAELERLKH--------------ALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
L ++ +RL++ AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSQQQRLRYQEQAQKCPTRFLYNALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 DLTQSGSSR 814
D S R
Sbjct: 366 DDDVPASGR 374
>gi|268318939|ref|YP_003292595.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
gi|262397314|emb|CAX66328.1| DNA polymerase III, gamma and tau subunits [Lactobacillus johnsonii
FI9785]
Length = 602
Score = 199 bits (506), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ +
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L ++ +T+ ++ L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTV 290
>gi|302390663|ref|YP_003826484.1| DNA polymerase III subunits gamma and tau [Thermosediminibacter
oceani DSM 16646]
gi|302201291|gb|ADL08861.1| DNA polymerase III, subunits gamma and tau [Thermosediminibacter
oceani DSM 16646]
Length = 571
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/358 (33%), Positives = 195/358 (54%), Gaps = 21/358 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++Y+P FDE++GQ +V++L N I G+I YLF G RGTGKTSTA++F+ ALNC
Sbjct: 5 ALYRRYRPRDFDEIVGQEAIVRTLKNQIRTGKIGHAYLFCGMRGTGKTSTARVFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC CR C G + +E+D + +G+D +R + + S P + R++V
Sbjct: 65 EQGPTDTPCNRCRNCLAINEGGMIDVIEMDAASNRGIDDIRTLRE--SVNFPPSEGRYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ VVFI TT+ + +P +I SRC ++ F +++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPEHVVFILATTEPNKLPSTILSRCMRFDFRRVQTRE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+V+ L++ISAE + E AL LIA ++ GS+RDA ++LD+ L+ G ++T L G
Sbjct: 183 LVSHLKRISAENGVEAEDKALALIARSSQGSMRDALSLLDKALAFGGDKLTYRDALSLFG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
V ++ E+ + E++ G D + L +++ +IG
Sbjct: 243 AVGDDLFFEISRAVKQRAPGRILDIIEEVVGLGKDLLRFTDDLMGFYRNLL--MVSIGAD 300
Query: 758 RSLTEA------ELERLKHA---------LKLLSEAEKQLRLSSERCTWFTATLLQLG 800
R+L + ELE L + L LL A +R +S+ T A +++L
Sbjct: 301 RNLVDVTDEEYGELEALAKSYSREEILNILDLLKTASNDVRWASQPRTVLEAAMVKLA 358
>gi|333376524|ref|ZP_08468299.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella kingae ATCC
23330]
gi|332967844|gb|EGK06943.1| DNA polymerase III, gamma/tau subunit DnaX [Kingella kingae ATCC
23330]
Length = 609
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/431 (29%), Positives = 211/431 (48%), Gaps = 32/431 (7%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
++ + L++K++P F +L+GQ VV++L N + +GR+ YL G RG GKT+ A+I
Sbjct: 14 IMTAYQVLARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARIL 73
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+ +LNC T PCG C+ C D +G+ + +E+D + G+D +R +L+ +A
Sbjct: 74 AKSLNCENTLHGDPCGQCQTCCDIDAGRFVDLLEIDAASNTGIDNIREVLE--NAQYAPT 131
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++
Sbjct: 132 VGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLR 191
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL- 692
+ + L + E + EP+AL L+ A+GS+RDA ++LDQ +G L
Sbjct: 192 NMTPQQVTDHLTHVLKTEQIMYEPNALALLGRAANGSMRDALSLLDQAIAMGSGGVKELD 251
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIM 746
V +++G V + L +LL M D + +A+E+ DS ++ + + Q +LI
Sbjct: 252 VRQMIGAVDKRYLYDLLTFLMEQDGERLLVKAQEMAANAIGFDSALNDLAMWLQRLALIK 311
Query: 747 DIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTA 794
+ + T ++E ERL H S+ + QL L+ + F
Sbjct: 312 TVPSAVAT------DDSERERLVHLANYFSDEQIQLYYQCVIHGKQDLPLAPDEYAGFVM 365
Query: 795 TLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASL 854
TLL++ + + S P SRE K Q P+ V+P +
Sbjct: 366 TLLRMLAFAPFAAKNTPSDSVIEGTQLHNPPEKKSRELAETK-----QPAPETEVAPDTK 420
Query: 855 REPVNGNSRHL 865
P +S H+
Sbjct: 421 ITPETESSLHV 431
>gi|163782796|ref|ZP_02177792.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
gi|159881917|gb|EDP75425.1| DNA polymerase III gamma subunit [Hydrogenivirga sp. 128-5-R1-1]
Length = 456
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/274 (36%), Positives = 166/274 (60%), Gaps = 3/274 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++KY+P FF E++GQ + V+ L N + R++ YLF GPRG GKT+ A+I + +LNC+
Sbjct: 5 FARKYRPKFFREVVGQEVPVRILKNAVKNDRVSHAYLFAGPRGVGKTTIARILAKSLNCL 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PCG C C + G + +E+D + +G+D +R + + +S +FKV+
Sbjct: 65 NPKEGEPCGECENCQEIDRGNFPDLIEMDAASNRGIDDIRALREAVS--YTPIKGKFKVY 122
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP R VFI TT+ + + +I SRCQ+ +F ++ D +
Sbjct: 123 IIDEAHMLTKEAFNALLKTLEEPPPRTVFILCTTEYEKILPTILSRCQRIIFGRVSDDKV 182
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L+ I E L E +AL IA ++G +RDA ++LDQ S++G+ ++T V +G+
Sbjct: 183 IDYLKDICEREGLECEEEALKSIAQASEGCMRDAASLLDQASVIGEGKVTQEAVESFLGI 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+S EK+ E + L ++SDT V+ EL G +
Sbjct: 243 LSAEKVREFIRLLLNSDTDGAVRWLNELYRKGYN 276
>gi|317478676|ref|ZP_07937831.1| DNA polymerase III [Bacteroides sp. 4_1_36]
gi|316905187|gb|EFV26986.1| DNA polymerase III [Bacteroides sp. 4_1_36]
Length = 604
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTADGEACNQCESCTSFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y F+
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFS 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E +L + + ++ + ++++ G D ++ L+S + D++
Sbjct: 239 VIENLNVLDYEYYFKLTGFFLENKISDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLPLLEVGASIRERYQAQAQQCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|385825345|ref|YP_005861687.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
gi|329666789|gb|AEB92737.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii DPC
6026]
Length = 602
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ +
Sbjct: 182 DLIARMTYILDQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L ++ +T+ ++ L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTV 290
>gi|426405587|ref|YP_007024558.1| DNA polymerase III subunits gamma and tau [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425862255|gb|AFY03291.1| DNA polymerase III gamma and tau subunits [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 612
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 172/290 (59%), Gaps = 3/290 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P F +++GQN + Q+L N + GR+ LF GPRGTGKTS+A+I + AL C
Sbjct: 6 IARKWRPQSFTDVVGQNHITQTLSNALKNGRLPHALLFTGPRGTGKTSSARILAKALRCP 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C CN+ G S + +E+DG + G+D +R L+ A +PS S ++K++
Sbjct: 66 NAQNFVPCNDCYSCNEIAGGSSIDVIEIDGASNNGVDAIRE-LRDTVAFMPS-SGKYKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP VVFI TT++ +P++I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLSTSAFNALLKTLEEPPSHVVFIMATTEVHKIPQTILSRCQRFDFRRISTRSI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
RL+ I E + + +AL ++A DGS+RD++++LDQ ++ +T + V E++G+
Sbjct: 184 TERLQLICDREGVTADDEALWVVARQGDGSMRDSQSLLDQVITFANGPLTRASVVEILGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
L E L + ++ +K ++ +G +P + L +I +++
Sbjct: 244 TDRALLFETLNALIDRNSQAILKVIEKIAAAGFEPHLYSQDLLEMIRNLL 293
>gi|118578743|ref|YP_899993.1| DNA polymerase III subunits gamma/tau [Pelobacter propionicus DSM
2379]
gi|118501453|gb|ABK97935.1| DNA polymerase III, tau subunit [Pelobacter propionicus DSM 2379]
Length = 569
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 159/274 (58%), Gaps = 3/274 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P EL GQ V ++L N I GR+A +LF G RG GKTSTA+I + ALNC
Sbjct: 10 LARKYRPQTLSELTGQEHVSRTLQNAIDSGRVAHAFLFSGARGVGKTSTARILAKALNCE 69
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T+PC C C + G S + E+DG + G+D +R L+ + LPS S R+K+F
Sbjct: 70 RGVSTEPCNTCPLCIEITKGTSTDVFEIDGASNTGVDDIRE-LRDNAKYLPSHS-RYKIF 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP+ V FIF TT+ +P +I SRCQ++ F +I I
Sbjct: 128 IIDEVHMLSTNAFNALLKTLEEPPEHVKFIFATTEPHKLPITILSRCQRFDFKRIPLAKI 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ RLR+I+ E +++ AL LIA DGS+RD+ T DQ L+ G ++ L+G
Sbjct: 188 IGRLRQIADAEGISINDSALALIARKGDGSMRDSLTAFDQVLACCGSNVSDEDTATLIGA 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
V L + ++DT + R++ + G +
Sbjct: 248 VDRRLLANISAAIFAADTQAVLAGIRQVDEVGYN 281
>gi|423645700|ref|ZP_17621295.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
gi|401266777|gb|EJR72847.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD166]
Length = 548
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 110/360 (30%), Positives = 205/360 (56%), Gaps = 19/360 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P F ELIGQN + Q++ N + + + Y+F GPRGTGKT+ AK+ + +LN
Sbjct: 3 QALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLN 62
Query: 519 CV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C ++ +PC C +C + +E+D + G++++R I + ++ + ++
Sbjct: 63 CENLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYA--PGTGKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP+ V+FI TTD+ VP +I SRCQ++ F +I
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPATIISRCQRFDFRRIGP 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNE 695
DI+ RLR ++ +E + +E +AL L+ + A G +RDA +++DQ + IT V+E
Sbjct: 181 RDIIERLRHVAKKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSE 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-IIAGTYT 754
+VG +S EK+ + + +T E + +++ +G +P+ L+ L + D +I+ +
Sbjct: 241 VVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFE 300
Query: 755 IGGRSLT-------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ ++T E E+ +++ ++ L+E + +++ S+ L+QL +
Sbjct: 301 VQEDNITTAILNNKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQLAT 360
>gi|289435979|ref|YP_003465851.1| DNA polymerase III subunits gamma and tau [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289172223|emb|CBH28769.1| DNA polymerase III, gamma and tau subunits [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 578
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 122/384 (31%), Positives = 204/384 (53%), Gaps = 26/384 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIIQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLEFILKEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALVDDDFVALAKRADSLKIYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSS 827
LTQ+GS + T E P+S
Sbjct: 357 ---LTQTGSV-ASGNIVTNEAPAS 376
>gi|163867528|ref|YP_001608727.1| DNA polymerase III subunits gamma and tau [Bartonella tribocorum
CIP 105476]
gi|161017174|emb|CAK00732.1| DNA polymerase III gamma and tau subunit [Bartonella tribocorum CIP
105476]
Length = 646
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 106/301 (35%), Positives = 173/301 (57%), Gaps = 13/301 (4%)
Query: 455 LENI------RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTS 508
+ENI R L++KY+P F +LIGQ +V++L N +GRIA ++ G RG GKT+
Sbjct: 1 MENIPVETAYRVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTT 60
Query: 509 TAKIFSAALNCVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILK 564
TA+I + ALN D +P C I G+ + +E+D + G+D +R I++
Sbjct: 61 TARILARALNYKTKDIDQPTTVLDTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIE 120
Query: 565 HLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQ 624
+ SA R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I
Sbjct: 121 QIRYRPVSA--RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITIL 178
Query: 625 SRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSL 683
SRCQ++ +I+ + A L +I+ E + VE AL +IA A+GS RDA ++ DQ ++
Sbjct: 179 SRCQRFDLRRIEAKALSAHLHQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAH 238
Query: 684 LGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
++++ V ++G+ + ++++L E M D + R D+G DP+ ++++LA
Sbjct: 239 SNGNVSAAEVRTMLGLADQARIIDLFEFVMKGDVIHALHELRSQYDAGADPLTILTELAD 298
Query: 744 L 744
Sbjct: 299 F 299
>gi|227888769|ref|ZP_04006574.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
gi|227850606|gb|EEJ60692.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
Length = 602
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 169/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ +
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L ++ +T+ ++ L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLNLLNGETSAALEIVHALLQDGASTKNILDELISLTV 290
>gi|169825458|ref|YP_001695633.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
gi|168994735|gb|ACA42274.1| DNA polymerase III subunit gamma/tau [Lysinibacillus sphaericus
C3-41]
Length = 636
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 109/295 (36%), Positives = 168/295 (56%), Gaps = 13/295 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L +KY+P FD LIGQN V +L N+I ++A YLF GPRGTGKTS AKIF+ LNC
Sbjct: 8 LYRKYRPQGFDNLIGQNHVKNTLENSIKHNKVAHAYLFTGPRGTGKTSAAKIFAKLLNCQ 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF--- 577
+ PCG C C D + + +E+D + G+D +R + + ++ +P F
Sbjct: 68 SPIDYNPCGECVCCQD----SNTDIIEMDAASNNGVDDIRDLREKVNY-----APAFGKK 118
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP +VFI TT+ +P +I SRCQ+Y F +I
Sbjct: 119 KVYIIDEVHMLSTAAFNALLKTLEEPPAHIVFILATTEPHKIPATILSRCQRYDFRRISQ 178
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
DIV R++ I E++ +E AL LI+ A G +RDA ++LDQ +S + ++T + E+
Sbjct: 179 DDIVHRMKTIVEAESVEIEEQALRLISQIAAGGMRDALSLLDQAISKVEGKVTLQDIIEI 238
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
G V K+ L++ S+ ++ +SG +P + ++ + DI+
Sbjct: 239 TGAVDTRKIGTLIQYINQSNIEGALEHFNTCFESGQEPHFFLEEMMIYLRDILVN 293
>gi|118445160|ref|YP_879267.1| DNA polymerase III subunits gamma and tau [Clostridium novyi NT]
gi|118135616|gb|ABK62660.1| DNA polymerase III, gamma and tau subunits [Clostridium novyi NT]
Length = 539
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 195/356 (54%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P FDE++GQ + +L N + RIA YLF G RGTGKTSTAKIFS A+NC
Sbjct: 5 ALYREWRPQTFDEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G S + E+D + +D +R +++ + P R+KV
Sbjct: 65 LNPQDGEPCNECEMCKKISAGLSIDVSEMDAASHNKVDDIRDLIEEVK--YPPQEGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L AFLK LEEPP+ V+FI TTD +P +I SRCQ++ F +IK D
Sbjct: 123 YIMDEAHMLTQGAVNAFLKTLEEPPENVIFILATTDPQKLPITILSRCQRFDFKRIKSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ RL KI+ E+ + + +L LIA +DG++RDA ++LDQ +S+ ++ V ++G
Sbjct: 183 ILGRLIKITKEQGIFGDNKSLKLIARMSDGAMRDALSILDQAISMGNGKVDYEQVINMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQLAS 743
+V+ E L++L + D +++ +++ +G D M ++Q
Sbjct: 243 LVTNENLIKLTNTIIDKDVENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMAKVTQKPE 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ + +E + +++L E E+Q + S + + ++++
Sbjct: 303 DVLDMSEENINFLKEQANKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELAVIKM 358
>gi|407772991|ref|ZP_11120293.1| DNA polymerase III subunits gamma and tau [Thalassospira
profundimaris WP0211]
gi|407284944|gb|EKF10460.1| DNA polymerase III subunits gamma and tau [Thalassospira
profundimaris WP0211]
Length = 629
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 170/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P FDELIG +V++L N + GR+A ++ G RG GKT+TA+I + ALNC+
Sbjct: 44 LARKYRPKSFDELIGHVPMVKTLSNALESGRLAHAFILTGVRGIGKTTTARIIARALNCI 103
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D +PCG C C + + +E+D ++ G+D +R +++ + SA
Sbjct: 104 GADGKGGATIEPCGVCEHCRAIAEDRHVDVLEMDAASRTGVDDIRELIEGVRYRPTSA-- 161
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + A LK LEEPP+ V FIF TT+I +P ++ SRCQ++ ++
Sbjct: 162 RYKIYIIDEVHMLSKSAFNALLKTLEEPPEHVKFIFATTEIRKIPITVLSRCQRFDLRRV 221
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++ A +I+ EN +E +A+ LIA ADGS+RD ++LDQ +S ++T+ V
Sbjct: 222 QTDELAAHYSRIAGLENAEIEEEAVTLIARAADGSVRDGMSLLDQAISHGAGKVTTQQVR 281
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+++G+ ++ +L + M + E ++ G DP V++ + L
Sbjct: 282 DMLGLSDRSRIFDLFDHTMKGEINEALELLAAQYALGGDPPVMLQDMLDL 331
>gi|220924618|ref|YP_002499920.1| DNA polymerase III subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
gi|219949225|gb|ACL59617.1| DNA polymerase III, subunits gamma and tau [Methylobacterium
nodulans ORS 2060]
Length = 605
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 166/293 (56%), Gaps = 9/293 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F++LIGQ +V++L N GRI ++ G RG GKT+TA+I + LN
Sbjct: 32 RVLARKYRPKDFEDLIGQGAMVRTLANAFEAGRIPQAWMLTGVRGVGKTTTARILARGLN 91
Query: 519 CVATDQTKPCGYCR------ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D + R C + + + +E+D + G+D VR I+ + S
Sbjct: 92 YALPDDPQAGPTIRMPALGLHCAAIMESRHIDVLEMDAASHTGIDDVRQIIDGIRYAPVS 151
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
A R+KV+++DE H+L K + AFLK LEEPP F+F TT+I VP +I SRCQ++
Sbjct: 152 A--RYKVYIVDEVHMLSEKAFNAFLKTLEEPPPHAKFVFATTEIRKVPVTILSRCQRFDL 209
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSS 691
+++ G ++A L+KI E + EP+AL IA A+GS+RD+ ++LDQ G R+T+
Sbjct: 210 RRVEAGTLIAHLQKICEAEGVAAEPEALAGIARAAEGSVRDSLSLLDQAIAHGAGRVTAE 269
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V +++G+ ++++L E AM D R ++G DP V++ LA
Sbjct: 270 TVRDMLGLADRARIIDLFEAAMRGDAPSAFAELRAQHEAGADPSVVLQDLAEF 322
>gi|340357125|ref|ZP_08679752.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
gi|339618632|gb|EGQ23225.1| DNA polymerase III, gamma/tau subunit DnaX [Sporosarcina
newyorkensis 2681]
Length = 593
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 136/420 (32%), Positives = 209/420 (49%), Gaps = 30/420 (7%)
Query: 447 NGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGK 506
NGE+ E L ++L + Y+P F E+ GQ + Q+L NT+ + YLF GPRGTGK
Sbjct: 3 NGEKGEMQL-IYQALYRAYRPQTFGEMSGQQAIKQTLQNTLLHQKTTHAYLFSGPRGTGK 61
Query: 507 TSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
TS AKIF+ ALNC T+PC C C G + + E D + ++ +R I++ +
Sbjct: 62 TSAAKIFAKALNCENGPATEPCNECETCRSITEGSNTDVTEFDAASNSRVEEIRDIIERV 121
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
PS + RFKV++IDE H+L + + A LK LEEPP VVFI TT+ +P +I SR
Sbjct: 122 HVA-PS-NARFKVYIIDEVHMLSNSAFNALLKTLEEPPAHVVFILATTEPHKLPLTIISR 179
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLG 685
CQ++ F I G+I+ R+RK+ + + E A+ IA A G +RDA +MLDQ +S G
Sbjct: 180 CQRFDFKPITAGEIMQRMRKVLDDIGVKAEDGAMRAIAQAATGGMRDALSMLDQAVSFSG 239
Query: 686 KRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+T+ + G + EE +L + + D + +L+ G D L + +
Sbjct: 240 DELTTEDALLVTGAIGEEIFYQLAQAIQAKDAGSALTLLHQLIAEGKDVGRLAEDMITFF 299
Query: 746 MDIIAGTYTIGGRSLTE--------AELERLKHA------LKLLSEAEKQLRLSSERCTW 791
DI+ L E EL + H+ + +LS+ ++++R S+ +
Sbjct: 300 RDILLLGTAPELTDLLELISDGEKFKELAQGFHSDDLYRYIDILSKTQQEMRFSNHGKVY 359
Query: 792 FTATLLQLGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSP 851
+ LL+ + SG R SS DP + AV+ + + Q Q A SP
Sbjct: 360 IESALLK--------MIHSGDQRVASSSAA--DPEMAQKLAVLEQTVR--QLQQQLAASP 407
>gi|290891886|ref|ZP_06554883.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404409082|ref|YP_006691797.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
SLCC2376]
gi|290558480|gb|EFD91997.1| dnaX protein [Listeria monocytogenes FSL J2-071]
gi|404243231|emb|CBY64631.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
SLCC2376]
Length = 580
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 194/356 (54%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
R+L + A+ ++ +K+L+ A++Q+R S+ + L+QL
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQL 357
>gi|160902859|ref|YP_001568440.1| DNA polymerase III subunits gamma and tau [Petrotoga mobilis SJ95]
gi|160360503|gb|ABX32117.1| DNA polymerase III, subunits gamma and tau [Petrotoga mobilis SJ95]
Length = 467
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 116/355 (32%), Positives = 188/355 (52%), Gaps = 16/355 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FDE++GQ VV+ N +++ ++ Y+F GPRGTGKT+TA+I + LNC
Sbjct: 4 NLYRKYRPKDFDEILGQPHVVKYFKNALNKQEVSHAYIFSGPRGTGKTTTARILAKVLNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + + +E+D + +G+D +R I S+ ++KV
Sbjct: 64 KDPQGYNPCNKCENCVSINNNSFLDVIEMDAASNRGIDEIRNIRD--SSNYRPVYGKYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+++ VP +I SR Q F + +
Sbjct: 122 YIIDEFHMLTREAFNALLKTLEEPPSHVIFILATTNLEKVPDTIISRAQIINFKNLGQNE 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVG 698
IV L+ I++ E + E DAL++IA A G +RDA +ML+Q+ G K+IT +++G
Sbjct: 182 IVEGLKNIASSEGIEYELDALEIIAKRAKGGMRDAISMLEQVEKFGEKKITHQDTLDILG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ E +++ +E +S E + ++ +L + G DP +L+ Q I D
Sbjct: 242 LFDENFIVQFIENVYNSKIDEFLAQSEDLFNLGKDPEILLEQSIEYIFD----------- 290
Query: 759 SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSS 813
SL + L H + ++ K L+ S + F +L MH T S S
Sbjct: 291 SLINEKRSNLIHLMGTFNDILKDLKYSENKRLIFDVEILDF--MHKNSTTSSTIS 343
>gi|110803673|ref|YP_697397.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
SM101]
gi|110684174|gb|ABG87544.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
SM101]
Length = 547
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 225/442 (50%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EA K ++ Q QN +
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEASNNKTLNNKQ---QNVIK 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|218887359|ref|YP_002436680.1| DNA polymerase III subunits gamma/tau [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|218758313|gb|ACL09212.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 688
Score = 199 bits (505), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 166/309 (53%), Gaps = 7/309 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ +Y+P F E+ GQ V L + R+AP YLF G RG GKT+ A+I + ALNC
Sbjct: 6 LTARYRPQTFAEVAGQETVKAILSRAAAEDRVAPAYLFSGTRGVGKTTIARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C +C + G + +E+DG + +G++ R + + + G R+KVF
Sbjct: 66 KAPTGEPCNTCEQCRKVVMGNHVDVVEIDGASNRGIEDARRLREAI--GYAPMEGRYKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP RV F+ TT+ P +I SRCQ + F ++ + ++
Sbjct: 124 IIDEAHMLTREAFNALLKTLEEPPPRVTFVLATTEPHKFPVTIISRCQHFTFKRLPENEL 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
A L + E + +P A+ LIA A GS+RD+ ++L Q L+L G R+T ++G+
Sbjct: 184 EAHLTGVLTREGQDFDPAAVRLIARRAAGSVRDSMSLLGQVLALGGDRLTVEGARGVLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS----LIMDIIAGTYTI 755
+E E+++ S D R+L+D GVD + +LAS L M AG +
Sbjct: 244 AGQELFFEVMQALASQDCVAVSAVVRDLLDKGVDIGFFLRELASTWRNLFMLRQAGEAAL 303
Query: 756 GGRSLTEAE 764
L E E
Sbjct: 304 PALDLPEEE 312
>gi|374385348|ref|ZP_09642855.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
gi|373225839|gb|EHP48167.1| DNA polymerase III, subunit gamma and tau [Odoribacter laneus YIT
12061]
Length = 369
Score = 199 bits (505), Expect = 1e-47, Method: Composition-based stats.
Identities = 119/361 (32%), Positives = 193/361 (53%), Gaps = 18/361 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++N ++KY+P FD ++GQ + +L N I ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MDNFIVSARKYRPASFDTVVGQLSITSTLRNAIVNHQLAQAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVATD-QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC +PC C C F +G+S N E+D + +D +R ++ + LP
Sbjct: 61 KTINCQNLQPNAEPCNECESCKAFNTGRSLNIHELDAASNNSVDDIRGLVDQVRI-LPQV 119
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++ V++IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 120 G-KYSVYIIDEVHMLSTSAFNAFLKTLEEPPAHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
++K D V L+ I+ +E + E +ALD+IA ADG++RDA ++ DQ ++ GK +T +
Sbjct: 179 RMKVEDTVRHLQYIAQKEGVTAEEEALDIIAQKADGAMRDALSIFDQVVNFCGKNLTYAG 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG- 751
V E + V+ E L +L D + + E+M+ G D L++ L +++
Sbjct: 239 VIENLNVLDYEYYFRLTDLFHKGDVSGALLLFNEIMEKGFDAANLVAGLGKHFRNVLVAK 298
Query: 752 ----------TYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+ I R L +A E L ALK++ + E Q ++ E+ TL++
Sbjct: 299 DPATVQLLEVSARIRERYLKQAAVCETGFLYDALKIIEQCEMQYKVRMEKRLCVEITLIK 358
Query: 799 L 799
L
Sbjct: 359 L 359
>gi|255304953|ref|ZP_05349127.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
ATCC 43255]
Length = 545
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 172/284 (60%), Gaps = 3/284 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F+++IGQ+ ++++L N I I YLF G RGTGKTSTAKIFS A+N
Sbjct: 3 KALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C + + + +E+D + +D +R + + S A+ ++K
Sbjct: 63 CLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRE--SVKYSPANAKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F ++
Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI R++KI +E ++++ AL+LIA N+ G+LRDA ++LDQ G+ +I V EL+
Sbjct: 181 DITLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELM 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G V+ E+L EL + + DT ++++ E + G D L++ L
Sbjct: 241 GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284
>gi|86160055|ref|YP_466840.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85776566|gb|ABC83403.1| DNA polymerase III, tau subunit [Anaeromyxobacter dehalogenans
2CP-C]
Length = 606
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 166/290 (57%), Gaps = 3/290 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E+ GQ VV++L N + G++A +LF GPRG GKT+TA++ + ALNC
Sbjct: 6 LARKYRPQRFGEMSGQEHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C + G++ + +E+D + G+D VR I++ + A RFKVF
Sbjct: 66 QGPTAEPCGVCTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVK--YRPARDRFKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
V+DE H+L + A LK LEEPP V F+ TTD+ VP +I SRCQ++ F ++ I
Sbjct: 124 VVDEVHMLSQGAFNALLKTLEEPPPHVKFVLATTDVHKVPETILSRCQRFDFRRLTLQQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L K++AEE + + P AL L+A A+G +RDA ++LDQ+ + G V E +G
Sbjct: 184 ADQLAKVAAEEGMRLSPAALALVARQAEGGMRDALSLLDQVRAACGDAPGDDAVAEALGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
V + + + D A ++ L D G++ L +L + +++
Sbjct: 244 VDAAAVSRIAAALVGRDGAALLREIEALHDRGLEVKRLAEELVRHLRNVV 293
>gi|393788838|ref|ZP_10376964.1| DNA polymerase III, subunit gamma and tau [Bacteroides nordii
CL02T12C05]
gi|392653944|gb|EIY47594.1| DNA polymerase III, subunit gamma and tau [Bacteroides nordii
CL02T12C05]
Length = 608
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 125/419 (29%), Positives = 213/419 (50%), Gaps = 36/419 (8%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSLTADGEACNACESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++EN+ EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVDDTVQHLTYVASKENITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLALLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMH----------------SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGP 841
+ + P TQS ++ Q + P + + A V+ S P
Sbjct: 359 VAQLTIEGDDVGGGRGPKQAIKPIFTQSVAA--QQPQNAPVAPQAQQQTANVHPAQSAP 415
>gi|395764529|ref|ZP_10445155.1| DNA polymerase III, subunit gamma and tau [Bartonella sp. DB5-6]
gi|395414356|gb|EJF80799.1| DNA polymerase III, subunit gamma and tau [Bartonella sp. DB5-6]
Length = 646
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 169/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A LR+I+ EN+ VE AL +I A+GS+RDA ++ DQ ++ I++ V
Sbjct: 189 IESTVLSAHLRQIAKRENVEVEEQALSMIVRAAEGSVRDALSIFDQAIAHSYGNISAVAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 249 RAMLGLADQARIIDLFEFIMKGNVVNALYELRSQYDAGADPLTILTELADF 299
>gi|373123468|ref|ZP_09537314.1| DNA polymerase III, subunit gamma and tau [Erysipelotrichaceae
bacterium 21_3]
gi|422325717|ref|ZP_16406745.1| DNA polymerase III, subunit gamma and tau [Erysipelotrichaceae
bacterium 6_1_45]
gi|371660801|gb|EHO26045.1| DNA polymerase III, subunit gamma and tau [Erysipelotrichaceae
bacterium 21_3]
gi|371667465|gb|EHO32590.1| DNA polymerase III, subunit gamma and tau [Erysipelotrichaceae
bacterium 6_1_45]
Length = 602
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 203/388 (52%), Gaps = 27/388 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ VVQ+L + + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 KALYRTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAYLFCGPRGTGKTSIAKIFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + KPC C C G + +E+D + G++ VR +++ + ++K
Sbjct: 64 CENPNH-KPCLECDNCRAVQDGSHPDIIEIDAASNNGVEEVRTLIEKVKYA--PLKGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F K+
Sbjct: 121 IYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPRE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+IV R+ I E + E + + +IA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 181 EIVQRIHTILEREQITCEEEVIRIIAQLADGGLRDALSILDQCIAYAQNHIQVHHINEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G+ + ++ L+L D + +L++ G+D L L ++ + I YT
Sbjct: 241 GITTIQEKLDLYRYIYGKDAVSLLNAIDQLIEKGIDIKRLTVDLIEILKESIIFEYTKDA 300
Query: 755 --------------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
I G+S+ ER + + LL E + R ++ ++F LLQ+
Sbjct: 301 SLLHILNSEEVLTLIDGKSIA----ERFQ-MIHLLMETYDKYRSAANAGSYFEVCLLQML 355
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSST 828
+ + +T + S ++ R E+ P ST
Sbjct: 356 DVKATVVTTTISHPLETPR-QEQKPVST 382
>gi|161506948|ref|YP_001576902.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
gi|160347937|gb|ABX26611.1| DNA polymerase III, gamma/tau subunit [Lactobacillus helveticus DPC
4571]
Length = 595
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 123/372 (33%), Positives = 200/372 (53%), Gaps = 16/372 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL +IA ADG +RDA ++LDQ LS +R+ E+
Sbjct: 182 DLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKERVNYQDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL----IMDIIAGTY 753
G ++E + ++L + + +K A+ + G ++ +L + +M I AG
Sbjct: 242 GFAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDD 301
Query: 754 TIGGRSLTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G L+E ++++K + L + A LR ++++ L++ GS
Sbjct: 302 R-QGTFLSEDFVQKVKDIPTKIFYRLITLANNALNDLRYTNQQQIPLEVFLVEAGSKQEE 360
Query: 806 DLTQSGSSRRQS 817
+ QS ++ Q+
Sbjct: 361 QVAQSSATPVQA 372
>gi|332559172|ref|ZP_08413494.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
WS8N]
gi|332276884|gb|EGJ22199.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
WS8N]
Length = 582
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I + LNCV
Sbjct: 12 LARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCV 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGTGGPTTEPCGQCEPCRAIAEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ ++A L +++ +E + DAL LI A+GS+RDA +++DQ G T+ V
Sbjct: 190 EPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M + A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEI 299
>gi|431792084|ref|YP_007218989.1| DNA polymerase III subunits gamma and tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
gi|430782310|gb|AGA67593.1| DNA polymerase III, subunit gamma/tau [Desulfitobacterium
dichloroeliminans LMG P-21439]
Length = 560
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 134/441 (30%), Positives = 226/441 (51%), Gaps = 26/441 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F +++GQ V ++L+N +++ ++A YLF GPRGTGKT+TAK+ + ALNC
Sbjct: 5 ALYREWRPKNFRDMVGQEHVTKTLINALAQNKVAHAYLFSGPRGTGKTTTAKVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
D +PC C C G + E+D + +G+D +R + LSAG +
Sbjct: 65 EHRDGVEPCNQCASCLSIDQGSAMEVYEIDAASNRGIDEIRDLRDKVRLSAG----ESKT 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L ++ + A LK LEEPP+RVVFI TT++ +P +I SR Q++ F++I
Sbjct: 121 KVYIIDEVHMLTTEAFNALLKTLEEPPERVVFILATTEVHKIPLTILSRVQRFEFHRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
I L K+ +V+ +AL +IA ++G LRDA ++LDQ LL ++ V +++
Sbjct: 181 EQIQNHLEKVCQAIGRDVDEEALQVIAQKSEGGLRDALSILDQCLLLDGKLGVVQVYQVL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V EE +L++ + A T+ R + ++ G+DP ++ +L + + T
Sbjct: 241 GMVGEEFSAQLVDQLAEGNYAATLARLGDGINQGMDPRQIIRELLEYLRQALLYAATQAF 300
Query: 758 RSLTEAELERL-----KHALK-------LLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+ E+L K LK +L + E QL+ ++ L+Q+
Sbjct: 301 PQIAPHLKEKLAFQCEKIGLKTLLQWIGILLQGESQLKYAANARLAAELLLVQVIYDSEK 360
Query: 806 DLTQSGSSRRQSSRTTEEDPSSTSREAVVYK--RMSGPQYMPQNAVSPASLREPVNGNSR 863
D +Q Q + EE+ + S+ V+ K R + + A+ P P S
Sbjct: 361 DGSQDSPQVLQRLQEIEEEIKNLSKGHVIQKESRQDSAPKLKEAALGPT----PSKKES- 415
Query: 864 HLGEVLSRIDGHNSYSKPSHS 884
H +D HN + SHS
Sbjct: 416 HAKSTTQPLD-HNDSERQSHS 435
>gi|42518518|ref|NP_964448.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
gi|41582803|gb|AAS08414.1| DNA polymerase III subunit gamma/tau [Lactobacillus johnsonii NCC
533]
Length = 602
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 168/289 (58%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVGQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADQGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ +
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYEDALRIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L ++ T+ ++ L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLNLLNGKTSAALEIVHALLQDGASTKNILDELISLTV 290
>gi|160887744|ref|ZP_02068747.1| hypothetical protein BACUNI_00146 [Bacteroides uniformis ATCC 8492]
gi|270295690|ref|ZP_06201891.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|423305050|ref|ZP_17283049.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T00C23]
gi|423309835|ref|ZP_17287819.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T12C37]
gi|156862775|gb|EDO56206.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
ATCC 8492]
gi|270274937|gb|EFA20798.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|392682549|gb|EIY75893.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T00C23]
gi|392683320|gb|EIY76656.1| DNA polymerase III, subunit gamma and tau [Bacteroides uniformis
CL03T12C37]
Length = 604
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 115/364 (31%), Positives = 199/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMSPTADGEACNQCESCTAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y F+
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFS 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D VA L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGVEDTVAHLAYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E + V+ E +L + + ++ + ++++ G D ++ L+S + D++
Sbjct: 239 VIENLNVLDYEYYFKLTGFFLENKISDALLLLNDVLNKGFDGSHFITGLSSHLRDLLVSK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DPATLPLLEVGASIRERYQAQAQQCPLPFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|217966098|ref|YP_002351776.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|386009482|ref|YP_005927760.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
L99]
gi|386028102|ref|YP_005948878.1| DNA polymerase III subunit gamma and tau [Listeria monocytogenes
M7]
gi|217335368|gb|ACK41162.1| DNA polymerase III subunit gamma/tau [Listeria monocytogenes HCC23]
gi|307572292|emb|CAR85471.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
L99]
gi|336024683|gb|AEH93820.1| DNA polymerase III gamma and tau subunit [Listeria monocytogenes
M7]
Length = 580
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 194/356 (54%), Gaps = 17/356 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
R+L + A+ ++ +K+L+ A++Q+R S+ + L+QL
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQL 357
>gi|313900814|ref|ZP_07834304.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2]
gi|312954234|gb|EFR35912.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. HGF2]
Length = 602
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 121/388 (31%), Positives = 203/388 (52%), Gaps = 27/388 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ VVQ+L + + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 KALYRTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAYLFCGPRGTGKTSIAKIFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + KPC C C G + +E+D + G++ VR +++ + ++K
Sbjct: 64 CENPNH-KPCLECDNCRAVQDGSHPDIIEIDAASNNGVEEVRTLIEKVKYA--PLKGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F K+
Sbjct: 121 IYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPRE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+IV R+ I E + E + + +IA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 181 EIVQRIHTILEREQITCEEEVIRIIAQLADGGLRDALSILDQCIAYAQNHIQVHHINEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G+ + ++ L+L D + +L++ G+D L L ++ + I YT
Sbjct: 241 GITTIQEKLDLYRYIYGKDAVSLLNAIDQLIEKGIDIKRLTVDLIEILKESIIFEYTKDA 300
Query: 755 --------------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
I G+S+ ER + + LL E + R ++ ++F LLQ+
Sbjct: 301 SLLHILNSEEVLTLIDGKSIA----ERFQ-MIHLLMETYDKYRSAANAGSYFEVCLLQML 355
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSST 828
+ + +T + S ++ R E+ P ST
Sbjct: 356 DVKATVVTTTISHPLETPR-QEQKPVST 382
>gi|194018066|ref|ZP_03056671.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
gi|194010258|gb|EDW19835.1| DNA polymerase III subunit gamma/tau [Bacillus pumilus ATCC 7061]
Length = 570
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + ++PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R++KI E+LNV+ +L++IA ADG +RDA ++LDQ +S G+++T +
Sbjct: 182 DIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ + +L E + A + EL+ G D L+ + D++
Sbjct: 242 GAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|126463125|ref|YP_001044239.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
gi|126104789|gb|ABN77467.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
ATCC 17029]
Length = 580
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 105/295 (35%), Positives = 170/295 (57%), Gaps = 8/295 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+ + L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I +
Sbjct: 7 QGYQVLARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAK 66
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
LNCV D T+PCG C C G+ + ME+D ++ G+ +R I+ S
Sbjct: 67 GLNCVGPDGTGGPTTEPCGQCEPCRAIAEGRHVDVMEMDAASRTGVGDIREIID--SVHY 124
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+AS R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++
Sbjct: 125 RAASARYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRF 184
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RIT 689
+I+ ++A L +++ +E + DAL LI A+GS+RDA +++DQ G T
Sbjct: 185 DLKRIEPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETT 244
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ V ++G+ ++L+L +L M + A + G DPM ++ LA +
Sbjct: 245 ADQVRAMLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEI 299
>gi|210616982|ref|ZP_03291317.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
gi|210149505|gb|EEA80514.1| hypothetical protein CLONEX_03539 [Clostridium nexile DSM 1787]
Length = 519
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 114/286 (39%), Positives = 169/286 (59%), Gaps = 8/286 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ + ++L N I RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKFRPGEFEDVKGQDHISKTLQNQIKADRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C SG S N +E+D + G+D +R I + + A P+ ++KV
Sbjct: 65 EHPVNGSPCGVCDSCKAISSGTSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I ARL + +EN+ VE A+ +A ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 IAARLADLMQKENIEVEEKAIRYVAKAADGSMRDALSILDQCIAFYLGQKLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
G V E LL + + A+ +K EL+ G + +SQLA+
Sbjct: 243 GAVDTEVFSRLLRELLERNVAKVMKSLDELVMQGRE----LSQLAA 284
>gi|381401812|ref|ZP_09926704.1| DNA polymerase III subunits gamma and tau [Kingella kingae PYKK081]
gi|380833211|gb|EIC13087.1| DNA polymerase III subunits gamma and tau [Kingella kingae PYKK081]
Length = 595
Score = 198 bits (504), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 127/424 (29%), Positives = 207/424 (48%), Gaps = 32/424 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + +GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 7 LARKWRPKTFADLVGQQHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 66
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T PCG C+ C D +G+ + +E+D + G+D +R +L+ +A ++KV+
Sbjct: 67 NTLHGDPCGQCQTCCDIDAGRFVDLLEIDAASNTGIDNIREVLE--NAQYAPTVGKYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 125 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTPQQV 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL-VNELVGV 699
L + E + EP+AL L+ A+GS+RDA ++LDQ +G L V +++G
Sbjct: 185 TDHLTHVLKTEQIMYEPNALALLGRAANGSMRDALSLLDQAIAMGSGGVKELDVRQMIGA 244
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDIIAGTY 753
V + L +LL M D + +A+E+ DS ++ + + Q +LI + +
Sbjct: 245 VDKRYLYDLLTFLMEQDGERLLVKAQEMAANAIGFDSALNDLAMWLQRLALIKTVPSAVA 304
Query: 754 TIGGRSLTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQLGS 801
T + E ERL H S+ + QL L+ + F TLL++ +
Sbjct: 305 T------DDPERERLVHLANYFSDEQIQLYYQCVIHGKQDLPLAPDEYAGFVMTLLRMLA 358
Query: 802 MHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGN 861
+ S P SRE K Q P+ V+P + P +
Sbjct: 359 FAPFAAKNTPSDSVIEGTQLHNPPEKKSRELAETK-----QPAPETEVAPDTKITPETES 413
Query: 862 SRHL 865
S H+
Sbjct: 414 SLHV 417
>gi|419782276|ref|ZP_14308085.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
gi|383183380|gb|EIC75917.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK610]
Length = 552
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 173/294 (58%), Gaps = 4/294 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLV 294
>gi|228949834|ref|ZP_04112044.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228809892|gb|EEM56303.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 553
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/366 (30%), Positives = 207/366 (56%), Gaps = 19/366 (5%)
Query: 453 GVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKI 512
G + ++L +KY+P F ELIGQN + Q++ N + + + Y+F GPRGTGKT+ AK+
Sbjct: 2 GEFKMYQALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKL 61
Query: 513 FSAALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLP 571
+ +LNC ++ +PC C +C + +E+D + G++++R I + ++
Sbjct: 62 IATSLNCENLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYA-- 119
Query: 572 SASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631
+ ++KV++IDE H+L + + A LK LEEPP+ V+FI TTD+ VP +I SRCQ++
Sbjct: 120 PGTGKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKVPTTIISRCQRFD 179
Query: 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRIT 689
F +I DI+ RLR ++ +E + +E +AL L+ + A G +RDA +++DQ + IT
Sbjct: 180 FRRIGPRDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFATNETIT 239
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-I 748
V+E+VG +S EK+ + + +T E + +++ +G +P+ L+ L + D +
Sbjct: 240 KDDVSEVVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLV 299
Query: 749 IAGTYTIGGRSLT-------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTAT 795
I+ + + ++T E E+ +++ ++ L+E + +++ S+
Sbjct: 300 ISKAFKVQEDNITTAILNNKFYELLEEGEIHKMQMMIRKLTEVKNEMKFSNNAQVSLEVG 359
Query: 796 LLQLGS 801
L+QL +
Sbjct: 360 LIQLAT 365
>gi|422872634|ref|ZP_16919119.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
F262]
gi|380306460|gb|EIA18725.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
F262]
Length = 547
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 225/442 (50%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERAAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EA K ++ Q QN +
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEASNNKTLNNKQ---QNVIQ 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|357023009|ref|ZP_09085226.1| DNA polymerase III subunits gamma and tau [Mesorhizobium amorphae
CCNWGS0123]
gi|355545102|gb|EHH14161.1| DNA polymerase III subunits gamma and tau [Mesorhizobium amorphae
CCNWGS0123]
Length = 605
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 169/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ +V++L N + GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 21 RVLARKYRPSNFSELIGQEPMVRTLTNAFASGRIAQAWMLTGVRGVGKTTTARILARALN 80
Query: 519 CVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+P C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 81 YKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVSA- 139
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 140 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 198
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I G +VA L I+ +E ++V+ DAL +IA A+GS RD+ ++LDQ G +++ V
Sbjct: 199 IDAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGSGAVSAEAV 258
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M+ D A + R D+G DP +++ LA
Sbjct: 259 RAMLGLADRARIVDLFEHVMNGDVAAALAEFRNQYDTGADPAAVLTDLAEF 309
>gi|95928309|ref|ZP_01311057.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas
acetoxidans DSM 684]
gi|95135580|gb|EAT17231.1| DNA polymerase III, subunits gamma and tau [Desulfuromonas
acetoxidans DSM 684]
Length = 597
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 160/272 (58%), Gaps = 3/272 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P F +L+GQ V ++L N I+ GR+ +LF G RG GKTS A+I + ALNC
Sbjct: 6 MARKWRPQTFADLVGQEHVSRTLANAIASGRVHHAFLFTGARGVGKTSAARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC C+ C + SG S + E+DG + G+D VR + + L +PS R+K+F
Sbjct: 66 NGPSAEPCNQCQHCEEISSGHSVDVFEIDGASNTGVDDVRELRETLRY-MPSQC-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FIF TT+ +P +I SRCQ++ F KI +
Sbjct: 124 IIDEVHMLSINAFNALLKTLEEPPEHVKFIFATTEPHKIPVTILSRCQRFDFRKIPAPKV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
VA+LR+I EN+ + AL LIA GS+RD+ + LDQ ++ +++ V L+G+
Sbjct: 184 VAQLRRIVDAENITISDRALALIAQRGGGSMRDSLSTLDQVVAFCSEQVADEDVQGLLGM 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSG 731
V L + LE M D + + R + D G
Sbjct: 244 VDRRLLFDALEGCMRQDCSMVLNVVRRVDDLG 275
>gi|333895907|ref|YP_004469781.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111172|gb|AEF16109.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 530
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 203/364 (55%), Gaps = 18/364 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQN +V++L N I GRI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPKSFCEVLGQNHIVRTLKNQIKSGRIGHAYLFCGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C+ C + + +E+D + +D VR + ++ PS S ++K
Sbjct: 63 CPNSVDGEPCNKCQICESANNNSLMDIIEIDAASNNSVDDVRELRDNIIYA-PS-SCKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPPQ +FI TT+ + +P +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPQHAIFILATTEPNKIPATILSRCQRFDFKRISSK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
I ++KI+ + +N++ A+ LIA + +GS+RDA ++L+Q + +T V +++G
Sbjct: 181 VISQNIKKIAEDSQINIDGKAIALIAKHGNGSMRDAISILEQCASYSDVLTYDDVCDILG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
V+++ L L+ D E +K+ +LM G+D L+ L S + D+I T G
Sbjct: 241 TVNDDTLFALVNSLNDRDGKEIIKQIDKLMLYGIDVNNLVKALLSFLRDVIVYK-TCGDE 299
Query: 759 S--LTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH- 803
S + E E+ L +AL+ L + + ++R + TLL+L +
Sbjct: 300 SEEILETEINDVIEKASLFDMAFLSNALEKLIDLQGKIRYAQSPRIMLEITLLKLINPEI 359
Query: 804 SPDL 807
SPD+
Sbjct: 360 SPDI 363
>gi|240849897|ref|YP_002971286.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
gi|240267020|gb|ACS50608.1| DNA polymerase III subunits gamma and tau [Bartonella grahamii
as4aup]
Length = 646
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N +GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTTVLDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A LR+I+ E + VE AL +IA A+GS RDA ++ DQ ++ + + V
Sbjct: 189 IESKALSAHLRQIAKYEKVEVEDQALSMIARAAEGSARDALSIFDQAIAHSNGNVNAIAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M D + R ++G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVNALHELRSQYEAGADPLTILTELADF 299
>gi|407004011|gb|EKE20489.1| hypothetical protein ACD_7C00555G0001 [uncultured bacterium]
Length = 572
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/279 (36%), Positives = 167/279 (59%), Gaps = 9/279 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F++++GQ +V++L N I R YLF GPRGTGKT+ A++F+ +NC
Sbjct: 5 TLYRKYRPSQFNDVVGQQHIVRTLSNAIENNRAGQAYLFTGPRGTGKTTFARVFAKTVNC 64
Query: 520 VATDQ------TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
A + PC C C F + S + +E+D + G+D +R + + +A L
Sbjct: 65 TAPIKKSKDHFLAPCLKCENCQQFENNTSADIIEIDAASNTGVDNIRELRE--TAKLSPF 122
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++K+++IDE H+L + A LK LEEPP ++FI TT+I VP +I SRCQ++ F+
Sbjct: 123 KGKYKIYIIDEVHMLSLGAFNALLKILEEPPAHIIFILATTEIHKVPETIISRCQRFDFS 182
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
K +I+ +L I +E + +E AL+LIA++A+G +RDAE++L+Q+ L K +ITS
Sbjct: 183 KFDIEEIIGKLSAIVKKEKITIEEPALELIAISAEGGMRDAESLLEQIITLEKNKITSEK 242
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
V +++G+ S + + EL L TA+ + ++ G
Sbjct: 243 VADILGISSNQSVEELTALVFDKKTAQALLLINKIYKDG 281
>gi|228943829|ref|ZP_04106216.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228815853|gb|EEM62087.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 562
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/330 (33%), Positives = 184/330 (55%), Gaps = 15/330 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLLYQ----- 296
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSE 787
T ++LER+ + + ++Q R+ SE
Sbjct: 297 ---TSSQLERMLERVMV----DEQFRMLSE 319
>gi|281420656|ref|ZP_06251655.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
gi|281405429|gb|EFB36109.1| DNA polymerase III, gamma and tau subunit [Prevotella copri DSM
18205]
Length = 638
Score = 198 bits (504), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 115/374 (30%), Positives = 203/374 (54%), Gaps = 18/374 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ+ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMTFDSVVGQSALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C C F +S N E+D + G+D+++ +++ +P ++KVF
Sbjct: 68 PREDGEACNECESCRAFNEQRSYNIFELDAASNNGVDQIKVLMEQ--TRIPPQVGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPPQ V+FI TT+ + +I SRCQ Y F ++ +
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPQHVIFILATTEKHKILPTILSRCQIYDFERMTVANT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++ +E + E AL +IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 INHLKMVAEKEGIQYEEQALAVIAEKADGGMRDALSIFDQAASFCMGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG----TYTI 755
+ + L++LA+ + AE + +++ G D ++ LA + +++ T +
Sbjct: 246 LDSDNYFRLVDLALENKVAEMMVTLDGILNRGFDGGNMIQGLAQHVRNVMMAKDPQTLPL 305
Query: 756 -----GGRSLTEAELER-----LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++ +A+ ++ L AL+L+++ + R SS + TL+Q+G + P
Sbjct: 306 LETSDDQKAKFQAQAQKAPTPFLYKALELMNQCDIHYRASSNKRLLVELTLIQIGQITQP 365
Query: 806 DLTQSGSSRRQSSR 819
+ S+ R +R
Sbjct: 366 EDQDVPSAGRTPNR 379
>gi|258541156|ref|YP_003186589.1| DNA polymerase III subunits gamma/tau [Acetobacter pasteurianus IFO
3283-01]
gi|384041077|ref|YP_005479821.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-12]
gi|384049592|ref|YP_005476655.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-03]
gi|384052702|ref|YP_005485796.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-07]
gi|384055934|ref|YP_005488601.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-22]
gi|384058575|ref|YP_005497703.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-26]
gi|384061869|ref|YP_005482511.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-32]
gi|384117945|ref|YP_005500569.1| DNA polymerase III subunit gamma/tau [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256632234|dbj|BAH98209.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-01]
gi|256635291|dbj|BAI01260.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-03]
gi|256638346|dbj|BAI04308.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-07]
gi|256641400|dbj|BAI07355.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-22]
gi|256644455|dbj|BAI10403.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-26]
gi|256647510|dbj|BAI13451.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-32]
gi|256650563|dbj|BAI16497.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256653554|dbj|BAI19481.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus IFO
3283-12]
Length = 657
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/299 (33%), Positives = 171/299 (57%), Gaps = 14/299 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 51 RVLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 110
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C ++ + + +E+D ++ G+D VR I++ +
Sbjct: 111 CIGPDGNGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREIIE--ATRFRPM 168
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ++
Sbjct: 169 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVLSRCQRFDLR 228
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK------- 686
++ ++V +I+ +E++ + DAL L+A ADGS+RD ++LDQ G
Sbjct: 229 RVPQSELVGLFSRIAEKEHVRLSSDALALVARAADGSVRDGLSLLDQAIAQGTGQTDADG 288
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
I ++++++++G+ E + +LLE ++ + + G DP +++ + L+
Sbjct: 289 VIGATVISDMLGLADREVVFDLLEAVLTGKPEQALALLDAAYARGADPGLVLGDMLELV 347
>gi|418324059|ref|ZP_12935311.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
pettenkoferi VCU012]
gi|365227717|gb|EHM68906.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
pettenkoferi VCU012]
Length = 580
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 187/350 (53%), Gaps = 6/350 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+ ++L + ++P FD+++GQ+ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 DYQALYRMFRPQSFDDVVGQSHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC + +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCERSTDGEPCNECPICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP VFI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPSHAVFILATTEPHKIPPTIISRAQRFDFKAIG 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RLR ++ + L+ E ALD IA ++G +RDA +++DQ G +T +
Sbjct: 180 HDQIVDRLRYVAESQELDYEDAALDFIAKASEGGMRDALSIMDQAIAFGDDHLTLQDALD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
+ G V EE + L + SD + + + G + L++ + + D I +
Sbjct: 240 VTGSVDEESINRLFKEVAESDVRAAFETYHQFVADGKEVNRLINDMIYFVRDTIMAKTSD 299
Query: 755 --IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+L +L+ L + ++++ +R S + F L+++ M
Sbjct: 300 THFNYTALENFDLDTLYKMIDVINDTLVSIRFSVNQNVHFEVLLVKMAEM 349
>gi|70727533|ref|YP_254449.1| DNA polymerase III subunits gamma and tau [Staphylococcus
haemolyticus JCSC1435]
gi|68448259|dbj|BAE05843.1| DNA polymerase III gamma and tau subunits [Staphylococcus
haemolyticus JCSC1435]
Length = 571
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 199/374 (53%), Gaps = 10/374 (2%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + ++P F +++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMFRPQSFQDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNPQDGEPCNECAICKGITQGTNGDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIG 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
I RLR ++ E+ L+ + +AL+ IA ++G +RDA +++DQ G + +T +
Sbjct: 180 TEQITDRLRFVAEEQQLDYDNEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V E L EL + + + R + + G + L++ + + D I T+
Sbjct: 240 VTGSVDEAALNELFKDVIDGNVKNAFTRYHQFISEGKEVNRLINDMIYFVRDTIMNK-TV 298
Query: 756 GGR----SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM--HSPDLTQ 809
+L +L+ L H + ++++ +R S + F L+++ M PD
Sbjct: 299 NNHAEFDALMNFDLDMLYHMIDIINDTLVSIRFSVNQNVHFEVLLVKIAEMVKSQPDTVT 358
Query: 810 SGSSRRQSSRTTEE 823
+ ++ + +S+ E
Sbjct: 359 NVATTQVASQPNNE 372
>gi|153854738|ref|ZP_01995972.1| hypothetical protein DORLON_01970 [Dorea longicatena DSM 13814]
gi|149752645|gb|EDM62576.1| DNA polymerase III, subunit gamma and tau [Dorea longicatena DSM
13814]
Length = 523
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/441 (30%), Positives = 231/441 (52%), Gaps = 42/441 (9%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I+ RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPDEFEDVKGQDAIVRTLKNQINADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + ++ P+ ++KV
Sbjct: 65 EHPVDGSPCGECAMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYR-PTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPITILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I ARLR++ +E +VE A+ IA ADGS+RD+ ++LDQ + + + +T V E++
Sbjct: 183 IAARLRELIDKEGWDVEDKAVRYIAKMADGSMRDSLSLLDQCAAFYMNETLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL ++ D + ++ EL+ G + +SQLA+ L++
Sbjct: 243 GAVDTEVFSRLLRQLLAMDVHQVIETVDELVMQGRE----LSQLAADFTWYLRNLLLVKS 298
Query: 747 -DIIAGTYTIGGRSLT----EAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D + + +L EA++ + L +++ S+ QL+ ++++ TL++
Sbjct: 299 SDNMEDVLDVSSENLALLKEEAQMIDSDTLIRYIRIFSDLTNQLKYATQKRVLLEVTLIK 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDP-----SSTSREAVVY----KRMSGPQYMPQNAV 849
L P + Q+ + R E+ + RE +VY K P+ P+
Sbjct: 359 LC---RPAMDQNKDALLDRIRAIEKQLEEGAWEAPVRERIVYASDAKEAGEPKPKPE--- 412
Query: 850 SPASLREPVNGNSRHLGEVLS 870
P +L E V ++ +++
Sbjct: 413 LPQALNEDVKAVAKDFRMIIN 433
>gi|291562955|emb|CBL41771.1| DNA polymerase III, subunits gamma and tau [butyrate-producing
bacterium SS3/4]
Length = 572
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 128/421 (30%), Positives = 210/421 (49%), Gaps = 26/421 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F ++ GQ+ +V++L N I GRI YLF G RGTGKT+ AKI + A+N
Sbjct: 4 QALYRKWRPQVFADVKGQDHIVKTLQNQIGSGRIGHAYLFCGTRGTGKTTVAKILARAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PCG C C ++G S N +E+D + G++ +R I + + P +++
Sbjct: 64 CEHPVDGSPCGECPSCKQILAGTSLNVVEIDAASNNGVENIREIREQVQ--YPPTEGKYR 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT++ +P ++ SRCQ+Y F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVHKIPITVLSRCQRYDFRRITLD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL--LGKRITSSLVNEL 696
I ARL++++ EN+ VE AL +A DGS+RDA ++LDQ + G+ +T V ++
Sbjct: 182 TITARLKELTEAENMPVEDKALRYVAKAGDGSMRDALSLLDQCAAFHFGETLTYEHVLDV 241
Query: 697 VGVVSEEKLLELLELAMSSDTA-------ETVKRARELMDSGVDPMVLMSQLASL----- 744
+G V +L + T E V + REL VD + + L L
Sbjct: 242 LGAVDNSVFRDLFHAIRENRTKDCILKLEEMVVQGRELSQFVVDFIWFLRNLLLLRTADD 301
Query: 745 ---IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
++D+ T + L +++ SE Q+R ++++ ++L
Sbjct: 302 AEDLLDMSEDNLTQLREDAALVDENTLMRYIRVFSELSNQIRFANQKRVLIELAFIKLT- 360
Query: 802 MHSPDLTQSGSS---RRQSSRTTEEDPSSTSREAVVYKRMSG-PQYMPQNAVSPASLREP 857
P++ QS S R + E+ S+ V M G P + P + +P
Sbjct: 361 --KPEMEQSMDSVLERLEKLERMVEEMSAGGYVPVQTAGMDGDPMINAGQQIPPQAYAQP 418
Query: 858 V 858
V
Sbjct: 419 V 419
>gi|404485202|ref|ZP_11020400.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
gi|404338637|gb|EJZ65082.1| DNA polymerase III, subunit gamma and tau [Barnesiella
intestinihominis YIT 11860]
Length = 592
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/367 (31%), Positives = 196/367 (53%), Gaps = 18/367 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++N ++KY+P F ++GQ + Q+L N I ++A YLF GPRG GKTS A+IF+
Sbjct: 1 MDNYIVSARKYRPSTFRSVVGQKALTQTLKNAIDSNKLAHAYLFCGPRGVGKTSCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T+ + C C C F +S N +E+D + +D +R ++ + +P
Sbjct: 61 KTINCFHPTESGEACNECESCRAFNEQRSYNIIELDAASNNSVDDIRTLIDQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KVF+IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ Y F
Sbjct: 119 IGKYKVFIIDEVHMLSAAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQVYDFQ 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I DI L+ ++++E + EP+AL++IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RITTTDIAEHLQYVASQEGITAEPEALNIIAQKADGGMRDALSVFDQVVSFSGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG- 751
V E + V+ E L++ + ++ + + +E+ D+G + + L+ D++
Sbjct: 239 VIENLNVLDYEYYFRLVDAFLQNNVPQALMIFKEIRDNGFEAQFFIGGLSRHFRDLLVSK 298
Query: 752 ----------TYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+ ++ R +AE L L A++L + + R+S+ + TL+Q
Sbjct: 299 DPVTLPLLEVSESVAKRYGEQAEKCTLPFLYRAMELSNRCDLDYRISNNKQFLVELTLIQ 358
Query: 799 LGSMHSP 805
+ + +P
Sbjct: 359 ICQITNP 365
>gi|419779473|ref|ZP_14305349.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK10]
gi|383186501|gb|EIC78971.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK10]
Length = 552
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/294 (36%), Positives = 172/294 (58%), Gaps = 4/294 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLV 294
>gi|157691309|ref|YP_001485771.1| DNA polymerase III subunits gamma and tau [Bacillus pumilus
SAFR-032]
gi|157680067|gb|ABV61211.1| DNA-directed DNA polymerase III gamma/tau subunits [Bacillus
pumilus SAFR-032]
Length = 570
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + ++PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEKSPVSEPCNECDACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R++KI E+LNV+ +L++IA ADG +RDA ++LDQ +S G+++T +
Sbjct: 182 DIVGRMQKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ + +L E + A + EL+ G D L+ + D++
Sbjct: 242 GAVSQQFISQLAEAIFDQNIAVALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|346306813|ref|ZP_08848964.1| hypothetical protein HMPREF9457_00673 [Dorea formicigenerans
4_6_53AFAA]
gi|345907790|gb|EGX77491.1| hypothetical protein HMPREF9457_00673 [Dorea formicigenerans
4_6_53AFAA]
Length = 525
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 136/434 (31%), Positives = 226/434 (52%), Gaps = 38/434 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V++L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPNEFEDVKGQDAIVRTLKNQIEADRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + + A P+ R+KV
Sbjct: 65 EHPVDGSPCGECAVCKAIAAGNSMNVIEIDAASNNGVDNIREIREEV-AYRPTEG-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEAHKIPVTILSRCQRYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS--LLGKRITSSLVNELV 697
I ARL+++ +E +VE A+ IA DGS+RDA ++LDQ + +G+++T V E++
Sbjct: 183 ISARLQELINKEGWDVEEKAVRYIARMGDGSMRDALSLLDQCAAFYIGQKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS--------LIM--- 746
G V E LL + + V+ EL+ G + +SQL++ L++
Sbjct: 243 GAVDTEVFSRLLRKILDRNVHSVVEIVDELVMQGRE----LSQLSADFTWYLRNLLLVRS 298
Query: 747 -----DIIAGTYTIGGRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
D++ + R EA++ + L +++ S+ QL+ S+++ L++
Sbjct: 299 SDDMEDVLDVSSENLARLKEEAQMIEDDALIRYIRVFSDLTSQLKYSTQKRVMLEVALIK 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEED------PSSTSREAVVYKRMSGPQYMPQNAVSPA 852
L P + + + R EE + +RE +VY ++GP+ Q
Sbjct: 359 LC---RPAMETNPDTLLDRLRAIEEKLENGDFMENAARERIVY--VNGPEGAEQEPKKKP 413
Query: 853 SLREPVNGNSRHLG 866
L E +N + + +
Sbjct: 414 ELPEALNEDVKQVA 427
>gi|47092324|ref|ZP_00230115.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|417313913|ref|ZP_12100619.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
gi|47019303|gb|EAL10045.1| DNA polymerase III, gamma and tau subunits [Listeria monocytogenes
str. 4b H7858]
gi|328468184|gb|EGF39190.1| DNA polymerase III subunits gamma and tau [Listeria monocytogenes
J1816]
Length = 579
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 117/370 (31%), Positives = 198/370 (53%), Gaps = 25/370 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL+ I EE + + AL ++A A+G +RDA ++LDQ+ G + + E+
Sbjct: 182 DIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVAVEDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTE---------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + A+ ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDDFVALAKRADSLKVYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSS 813
LTQ+G S
Sbjct: 357 ---LTQAGKS 363
>gi|408409587|ref|ZP_11180879.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
gi|407876256|emb|CCK82685.1| DNA polymerase III, gamma/tau subunit [Lactobacillus sp. 66c]
Length = 648
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N+I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + E+D + +D +R +L + P+ ++K
Sbjct: 64 CLNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT++ VP +I SR Q+Y F +I +
Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+V R+ I +E + E AL +IA ADG +RDA ++LDQ LS ++ E+
Sbjct: 182 DLVKRMEYILGQEGVAYEDRALSVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G + E + +LL ++ D A+ + A++ + +G +++++ SL + ++
Sbjct: 242 GFAAREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQVM 293
>gi|423278273|ref|ZP_17257187.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
610]
gi|404586283|gb|EKA90856.1| DNA polymerase III, subunit gamma and tau [Bacteroides fragilis HMW
610]
Length = 614
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 131/431 (30%), Positives = 217/431 (50%), Gaps = 40/431 (9%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMNLTADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVDDTVNHLSYVASKEGITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -AGTY-------TIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T +I R +A+ L L A+KL ++ + R S + TL+Q
Sbjct: 299 DAATLQLLEVGASIRQRYQEQAQKCTLPFLYRAMKLCNDCDMNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMH----------------SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQ 842
+ + P TQ ++++ ST+ A V PQ
Sbjct: 359 VAQLTVEGDDGSGGRGPKQAIKPVFTQPAAAQQPQVAPAASQSQSTNVAAPV-----APQ 413
Query: 843 YMPQNAV-SPA 852
PQ A SPA
Sbjct: 414 VAPQQATASPA 424
>gi|424904638|ref|ZP_18328148.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis MSMB43]
gi|390930616|gb|EIP88018.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis MSMB43]
Length = 831
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFSELLSPEQVQLYYQIATLGRGELGLAPDEYAGFTMTLLRM 355
>gi|302669596|ref|YP_003829556.1| DNA polymerase III subunits gamma/tau [Butyrivibrio proteoclasticus
B316]
gi|302394069|gb|ADL32974.1| DNA polymerase III gamma and tau subunits DnaX1 [Butyrivibrio
proteoclasticus B316]
Length = 533
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/357 (33%), Positives = 191/357 (53%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V +L N I R+ YLF G RGTGKTS AKI + A+NC
Sbjct: 5 ALYRKFRPPVFEDVKGQDHIVTTLKNQIKSDRVGHAYLFCGTRGTGKTSVAKILARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C + +G S N +E+D + G+D VR I+ +S P+ + KV
Sbjct: 65 ENPVDGSPCGQCEMCREIAAGNSMNVIEIDAASNNGVDNVREIIDEVSYS-PTKGKK-KV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSYVMFILATTEVQKLPITILSRCQRYDFHRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I ARLR++ E + VE AL +A ADGS+RD+ ++LDQ G+ +T V ++
Sbjct: 183 IEARLREVVDAEGIKVEDRALRYVAKTADGSMRDSLSLLDQCIAFNYGEELTYDKVLNVL 242
Query: 698 GVVSEEKLLELLELAMSSDT-------AETVKRARELMDSGVDPMVLMSQLASL------ 744
G V E L + D A+ V + REL D + + L +
Sbjct: 243 GAVDTEVFSRLFSALYTQDINGALTLLADIVIQGRELSQFVNDFVWYLRNLMLVQASDQM 302
Query: 745 --IMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++DI + + A+++ + +++ SE Q+R +S++ TL++L
Sbjct: 303 EDVIDISSDNLVALKEQASTADIDTILRYIRVFSELSSQIRYASQKRILIEITLIKL 359
>gi|299146823|ref|ZP_07039891.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
gi|298517314|gb|EFI41195.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. 3_1_23]
Length = 621
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|255348697|ref|ZP_05380704.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
70]
gi|255503237|ref|ZP_05381627.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
70s]
gi|255506915|ref|ZP_05382554.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
D(s)2923]
gi|385241703|ref|YP_005809543.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/11023]
gi|385245310|ref|YP_005814133.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/150]
gi|386262686|ref|YP_005815965.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
Sweden2]
gi|389858025|ref|YP_006360267.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis F/SW4]
gi|389858901|ref|YP_006361142.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis E/SW3]
gi|389859777|ref|YP_006362017.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis F/SW5]
gi|289525374|emb|CBJ14851.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
Sweden2]
gi|296434926|gb|ADH17104.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/150]
gi|296438646|gb|ADH20799.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/11023]
gi|380249097|emb|CCE14389.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis F/SW5]
gi|380249972|emb|CCE13500.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis F/SW4]
gi|380250850|emb|CCE12611.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis E/SW3]
gi|440527035|emb|CCP52519.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
D/SotonD1]
gi|440529708|emb|CCP55192.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/SotonE4]
gi|440530607|emb|CCP56091.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/SotonE8]
gi|440531499|emb|CCP57009.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
F/SotonF3]
gi|440535074|emb|CCP60584.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
E/Bour]
Length = 466
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 6/363 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S++Y+P F E++GQ+IVV L N++ R A Y+F G RGTGKT+ A++F+ ALNC
Sbjct: 8 SRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T +PC C C + G S + +E+DG + +G++ +R I +PS S R+K++
Sbjct: 68 PTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQI-NETVLFVPSKS-RYKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + + LK LEEPP V F TT+I +P +I SRCQK L +I + I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ +L I+ +E +AL IA A GSLRDAE++ D + L + + + +G+
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKALGI 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+SE+ L +L E + + + + + M GV P + + L + Y+ S
Sbjct: 246 LSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSKQFHS 305
Query: 760 L-TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSGSSRRQS 817
+ T+ E L L L E+ + + L+ T+ +++L ++S P +Q S RQ
Sbjct: 306 VATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIYSRPTFSQLVSQIRQP 365
Query: 818 SRT 820
+ T
Sbjct: 366 APT 368
>gi|333382965|ref|ZP_08474630.1| hypothetical protein HMPREF9455_02796 [Dysgonomonas gadei ATCC
BAA-286]
gi|332828295|gb|EGK01007.1| hypothetical protein HMPREF9455_02796 [Dysgonomonas gadei ATCC
BAA-286]
Length = 582
Score = 198 bits (503), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 122/415 (29%), Positives = 218/415 (52%), Gaps = 31/415 (7%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++N ++KY+P+ F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MDNYIVSARKYRPMTFNSVVGQRALTTTLKNAIASGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC++ + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCLSPAADGEACNQCESCVAFNEQRSFNIHELDAASNNSVDDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y F+
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFS 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L+ ++++EN+ EP+AL+++A ADG +RDA ++ DQ +S G +T
Sbjct: 179 RITIKDTVEHLQYVASQENVQTEPEALNVLAQKADGGMRDALSIFDQVVSFTGGNVTYKA 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + ++++ + + E++ G D +++ +AS D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCILANNVVDGLLILNEILSKGFDGNNVITGIASHFRDLLLCK 298
Query: 750 ----AGTYTIGG----RSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A + +G R + A E L A+ +++E++ RLS + T+++
Sbjct: 299 DPKTAELFEVGASIRDRYIETARKCNNEFLYKAIDIVNESDLNYRLSRNKRLLSDLTVIR 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPAS 853
L + SP Q+G ++ + DP ++ + Q P N P S
Sbjct: 359 LCQLSSP---QTGLEDQKKKQVI--DP--------IFSKQEAKQTPPTNQTVPQS 400
>gi|403238558|ref|ZP_10917144.1| DNA polymerase III subunits gamma and tau [Bacillus sp. 10403023]
Length = 562
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQTFHDVVGQEHITKTLQNALLQEKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + +E+D + G+D +R I + PS R+K
Sbjct: 64 CEHSPVAEPCNECAACRGITDGSIADVIEIDAASNNGVDEIRDIRDKVKYA-PSVV-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVIFILATTEPHKIPLTIISRCQRFDFRRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV R++ I AE+N++V+ AL +IA A+G +RDA ++LDQ +S +++ V +
Sbjct: 182 AIVGRMKTIIAEQNVSVDDQALYVIARAAEGGMRDALSLLDQAISFSDEKVKLEDVLVIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ L ++ D +K E+MD G DPM + L D++
Sbjct: 242 GAVSQSFLTNIVRAIRDRDVRTALKTLDEMMDHGKDPMRFIEDLIFYYRDML 293
>gi|365857064|ref|ZP_09397065.1| DNA polymerase III, subunit gamma and tau [Acetobacteraceae
bacterium AT-5844]
gi|363716941|gb|EHM00332.1| DNA polymerase III, subunit gamma and tau [Acetobacteraceae
bacterium AT-5844]
Length = 636
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 168/295 (56%), Gaps = 11/295 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FDE++GQ+ +V++L N ++ R+A ++ G RG GKT+TA+I + ALN
Sbjct: 62 RVLARKYRPQNFDEVVGQDALVRTLRNAFAQNRVAHAFMLTGVRGVGKTTTARIIARALN 121
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C EC ++ + + +E+D + G+D +R + + + A
Sbjct: 122 CVGADGNGGPTASPCGVCPECQAILADRHPDVLELDAASNNGVDNIRELREAVRYR--PA 179
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
RFKV+++DE H+L + + A LK LEEPP +V FIF TT+I VP +I SRCQ++
Sbjct: 180 RARFKVYILDEVHMLSTAAFNALLKTLEEPPPQVKFIFATTEIRKVPATILSRCQRFDLR 239
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK----RIT 689
++ + A I+ E + E +A+ +IA ADGS+RD ++LDQ I
Sbjct: 240 RVPQEQLRAYFTDIAGREKIAAEEEAIAMIARAADGSVRDGLSLLDQAIAQAAGAEGGIQ 299
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+++V +++G+ LL+LLE D A + + G DP V+++ L L
Sbjct: 300 AAMVRDMLGLADRSLLLDLLEGVFRGDIAAVLNTMDHGHERGADPGVVLADLLEL 354
>gi|301051759|ref|YP_003789970.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
anthracis str. CI]
gi|423554043|ref|ZP_17530369.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus ISP3191]
gi|300373928|gb|ADK02832.1| DNA polymerase III subunits gamma and tau [Bacillus cereus biovar
anthracis str. CI]
gi|401181995|gb|EJQ89141.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus ISP3191]
Length = 562
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|299141517|ref|ZP_07034653.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
gi|298576853|gb|EFI48723.1| DNA polymerase III, gamma/tau subunit [Prevotella oris C735]
Length = 599
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 202/369 (54%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P+ FD ++GQ+ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 522 T-DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C C F +S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PGEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ G+
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++A+E++ + +AL +IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 IEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + ++++ A+++ +E + +++ G D L+ LA+ + +++ T+
Sbjct: 246 LDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMARDVQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++ + E+ L ALKLL++ + + SS + TL+Q+ + P
Sbjct: 306 LETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVAQITQP 365
Query: 806 DLTQSGSSR 814
D +G+ R
Sbjct: 366 DDDDAGAGR 374
>gi|228925276|ref|ZP_04088374.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|229119685|ref|ZP_04248948.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
gi|228663776|gb|EEL19353.1| DNA polymerase III subunit gamma/tau [Bacillus cereus 95/8201]
gi|228834390|gb|EEM79929.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 562
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|423297338|ref|ZP_17275399.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
gi|392667515|gb|EIY61023.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL03T12C18]
Length = 621
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 198/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 YTIG------GRSLTEAELER--------LKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+ G S+ ++ E+ L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQSYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|377832131|ref|ZP_09815095.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
gi|377554138|gb|EHT15853.1| DNA polymerase III, subunit gamma and tau [Lactobacillus mucosae
LM1]
Length = 578
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 196/372 (52%), Gaps = 17/372 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FDE++GQ +V Q+L N I +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVWRPQRFDEIVGQQVVTQTLKNAIITKQISHAYLFAGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C +G+ + +E+D + G++ +R I A +K
Sbjct: 64 CHHRQDGEPCNECEICRAITNGQLGDVIEIDAASNNGVEEIRDIRD--KAKYAPTQADYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPLTIISRVQRFDFRRISAQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D R++ I +++++ E DAL +IA A+G +RDA ++LDQ LS ++ +
Sbjct: 182 DAFERMQYILDQKHVDYENDALWVIANAAEGGMRDALSILDQVLSFSDNQVKLDDALLVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G V+++ L + + S +A + +E++D G D + L S I D++
Sbjct: 242 GSVTKQLLKKYFDETTSHQSAAALHTMKEILDQGKDGQRFIEDLISFIRDVLLYQESPQL 301
Query: 753 YTIGGRSLTEAELERLKHA---------LKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+ G L EA+ ++L A + L+E ++++R ++ + ++L +
Sbjct: 302 VNVAGSGLKEADFQQLSQAASADELYQMIDELNEIQEEMRFTTHPDVYLEVLTVKLSQIK 361
Query: 804 SPDLTQSGSSRR 815
D S S R
Sbjct: 362 PQDNKTSASDPR 373
>gi|350571100|ref|ZP_08939437.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria wadsworthii
9715]
gi|349793268|gb|EGZ47105.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria wadsworthii
9715]
Length = 681
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/427 (29%), Positives = 217/427 (50%), Gaps = 32/427 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + +GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALQNALDKGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C SG+ + +E+D + G+D +R +L+ +A S ++KV+
Sbjct: 66 NPSNGEPCGQCQSCTQIDSGRFVDLLEIDAASNTGIDNIREVLE--NAQYAPTSGKYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTPQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + EN+ EP AL L+ A GS+RDA ++LDQ +G +++ V ++G
Sbjct: 184 ADHLAHVLRAENIPAEPAALQLLGRAAAGSMRDALSLLDQAIAMGSGKVSEEDVRHMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V + L ELL+ + + +++A+E+ + +S+LA L+ I + +
Sbjct: 244 VDKRYLYELLQSIAAQNGEALLQKAQEMAARAIGFDSALSELAVLLQRI--ALFKTVSSA 301
Query: 760 LTEAELERLKHALKLLSE----------------AEKQLRLSSERCTWFTATLLQLGSMH 803
+++ + ER L++L+E ++ L L+ + F TLL++ +
Sbjct: 302 ISQDDPER--DTLQVLAEHLGDEQIQLYYQCAIHGKRDLSLAPDEYAGFVMTLLRMLAF- 358
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPVNGNSR 863
+P L +G+ +TE S +E K + P Y Q P + EP
Sbjct: 359 AP-LAAAGNPTNGQISSTELHTPSVEKETEPKKPLVLPDYPEQ----PPAANEPTTA--- 410
Query: 864 HLGEVLS 870
H+ E S
Sbjct: 411 HIAETAS 417
>gi|330444347|ref|YP_004377333.1| DNA polymerase III subunit gamma [Chlamydophila pecorum E58]
gi|328807457|gb|AEB41630.1| DNA polymerase III, gamma subunit [Chlamydophila pecorum E58]
Length = 441
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 124/357 (34%), Positives = 200/357 (56%), Gaps = 15/357 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S+KY+P F E++GQ+ VV L N + R+ YLF G RGTGKT+ A+IF+ ALNC+
Sbjct: 10 SRKYRPQAFKEILGQSAVVTVLKNALLLKRVGHAYLFSGIRGTGKTTLARIFAKALNCLK 69
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + +PC C C + SG S + +E+DG + +G++ +R I + + A ++++
Sbjct: 70 LSPEGEPCNVCASCKEISSGSSLDVIEIDGASHRGIEDIRQINE--TVIFTPAKSAYRIY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPPQ V+F TT+I VP +I SRCQK N+I D I
Sbjct: 128 IIDEVHMLTKEAFNALLKTLEEPPQHVIFFLATTEIHKVPNTILSRCQKLHLNRIPDATI 187
Query: 641 VARLRKISAE-ENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
V +L + + L +AL IA A GSLRDAE++ D ++LL ++T V+ +G
Sbjct: 188 VEKLFAMVQDTPTLQASKEALLPIARAAQGSLRDAESLYDYVVALLPDKMTPQEVSRALG 247
Query: 699 VVSEEKLLELLELAMSSDT-AETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
+V ++ +L+ L++A+ ++ AE + +L+DSGV P VL+ L D++
Sbjct: 248 LVPQD-ILKSLDIAIRKNSPAEALAPITQLVDSGVAPTVLLHDLTLFYRDLLLNPQATD- 305
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLS-SERCTWFTATLLQLGSMHSPDLTQSGSS 813
+ E++ L L E+ + + + E+ T + + H P L+Q SS
Sbjct: 306 ------DPEQILEVLDYLGESSRHIHNTIFEKIFLETVIIHIMRIFHRPTLSQLISS 356
>gi|306829660|ref|ZP_07462850.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
ATCC 6249]
gi|304428746|gb|EFM31836.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus mitis
ATCC 6249]
Length = 552
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNSCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPDAIEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|383113504|ref|ZP_09934276.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
gi|313695672|gb|EFS32507.1| DNA polymerase III, subunit gamma and tau [Bacteroides sp. D2]
Length = 621
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|452994332|emb|CCQ94089.1| DNA polymerase III gamma and tau subunits [Clostridium ultunense
Esp]
Length = 572
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/359 (34%), Positives = 195/359 (54%), Gaps = 17/359 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F E++GQ + Q+L N + GR YLF GPRGTGKTS AKI + A+N
Sbjct: 12 KALYRVYRPQTFSEVVGQEHITQTLRNAVRDGRTTHAYLFSGPRGTGKTSAAKILAKAVN 71
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C++ + +PC C C SG+ + +E+D + +G+D +R I + A L + ++K
Sbjct: 72 CLSPQEGEPCNRCDHCVGITSGEIMDVLEIDAASNRGVDEIRDIRE--KAYLRPSLLKYK 129
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L ++ + A LK LEEPP V+FI TTD VP +I SRCQ+Y F K+
Sbjct: 130 VYIIDEVHMLTTEAFNALLKTLEEPPSHVIFILATTDPHKVPLTILSRCQRYDFRKVSMQ 189
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+++ RLRKI+ EE +++ AL LI +DG +RDA ++LDQ S GK IT + LV
Sbjct: 190 EMMKRLRKITEEEEIHITEGALRLIVQFSDGGMRDALSLLDQAYSFAGKEITEKEIELLV 249
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-- 755
G +S E +++ A+ ++ E G +P ++ L + D+ Y
Sbjct: 250 GSLSNEWFGQVILALYEQRIADLLQLTDEAFSQGKEPDQILRGLLYFLRDLSLFHYAPEL 309
Query: 756 --------GGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+T A+ L+R+ + L++ + LR SS L+ LG MH
Sbjct: 310 DEVAREKESQTFVTLAQVLPLDRIYETMGFLNKMQNDLRWSSYPRILLETGLIHLG-MH 367
>gi|58336713|ref|YP_193298.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227903276|ref|ZP_04021081.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
gi|58254030|gb|AAV42267.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus NCFM]
gi|227869081|gb|EEJ76502.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
acidophilus ATCC 4796]
Length = 596
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/316 (36%), Positives = 178/316 (56%), Gaps = 9/316 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCIAANEGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL++IA ADG +RDA ++LDQ LS + ++
Sbjct: 182 DLENRMKYILDQENIKYEVKALNVIAQVADGGMRDALSILDQLLSYEKDSVNYEDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL----IMDIIAGTY 753
G + E + ++L + ++ +K A+E +D G ++ +L + +M I A
Sbjct: 242 GFAARENIEKILLALLEQNSVNALKLAQESLDQGASSKNILDELIDMATKSLMVIKANED 301
Query: 754 TIGGRSLTEAELERLK 769
G LTE +E++K
Sbjct: 302 --QGAFLTENFIEKIK 315
>gi|77464283|ref|YP_353787.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
2.4.1]
gi|77388701|gb|ABA79886.1| DNA polymerase III tau and gamma subunits [Rhodobacter sphaeroides
2.4.1]
Length = 582
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I + LNCV
Sbjct: 12 LARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCV 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGTGGPTTEPCGQCEPCRAISEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ ++A L +++ +E + DAL LI A+GS+RDA +++DQ G T+ V
Sbjct: 190 EPEVMMAHLSRVAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M + A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEI 299
>gi|166154545|ref|YP_001654663.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
434/Bu]
gi|166155420|ref|YP_001653675.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|301335807|ref|ZP_07224051.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2tet1]
gi|165930533|emb|CAP04028.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis 434/Bu]
gi|165931408|emb|CAP06982.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
L2b/UCH-1/proctitis]
gi|440526137|emb|CCP51621.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/8200/07]
gi|440535962|emb|CCP61475.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/795]
gi|440536854|emb|CCP62368.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L1/440/LN]
gi|440537744|emb|CCP63258.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L1/1322/p2]
gi|440538634|emb|CCP64148.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L1/115]
gi|440539523|emb|CCP65037.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L1/224]
gi|440540414|emb|CCP65928.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2/25667R]
gi|440541303|emb|CCP66817.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L3/404/LN]
gi|440542190|emb|CCP67704.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/UCH-2]
gi|440543081|emb|CCP68595.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Canada2]
gi|440543972|emb|CCP69486.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/LST]
gi|440544862|emb|CCP70376.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Ams1]
gi|440545752|emb|CCP71266.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/CV204]
gi|440914014|emb|CCP90431.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Ams2]
gi|440914904|emb|CCP91321.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Ams3]
gi|440915796|emb|CCP92213.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Canada1]
gi|440916690|emb|CCP93107.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Ams4]
gi|440917580|emb|CCP93997.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
L2b/Ams5]
Length = 466
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 6/363 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S++Y+P F E++GQ+IVV L N++ R A Y+F G RGTGKT+ A++F+ ALNC
Sbjct: 8 SRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T +PC C C + G S + +E+DG + +G++ +R I +PS S R+K++
Sbjct: 68 PTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQI-NETVLFVPSKS-RYKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + + LK LEEPP V F TT+I +P +I SRCQK L +I + I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPAHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ +L I+ +E +AL IA A GSLRDAE++ D + L + + + +G+
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKALGI 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+SE+ L +L E + + + + + M GV P + + L + Y+ S
Sbjct: 246 LSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSKQFHS 305
Query: 760 L-TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSGSSRRQS 817
+ T+ E L L L E+ + + L+ T+ +++L ++S P +Q S RQ
Sbjct: 306 VATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIYSRPTFSQLVSQIRQP 365
Query: 818 SRT 820
+ T
Sbjct: 366 APT 368
>gi|383774866|ref|YP_005453935.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
S23321]
gi|381362993|dbj|BAL79823.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium sp.
S23321]
Length = 605
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 173/294 (58%), Gaps = 9/294 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ VV+++ N GRI ++ G RG GKT+TA+I + ALN
Sbjct: 21 RVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALN 80
Query: 519 CVATDQTK--PCGYCR----ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D + P + C + + + +E+D + G+D VR I + S
Sbjct: 81 YEMPDGSVKGPTIHMPTLGVHCQAIMESRHMDVLEMDAASHTGVDDVRQI--NDSVRYAP 138
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
AS R+KV++IDE H+L + + AFLK LEEPP+ F+F TT+I VP ++ SRCQ++
Sbjct: 139 ASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDL 198
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSS 691
+++ ++ L ISA+EN+ +EP+AL +IA A+GS+RD+ ++LDQ ++ + +
Sbjct: 199 RRVEADVLMKHLANISAKENVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGAVKAD 258
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
V +++G+ ++++L + D A K R+ D G DP+V++S LA +
Sbjct: 259 AVRQMLGLADRTRVIDLFDSLARGDIASAFKEFRDQYDVGADPIVVLSDLAEFV 312
>gi|293372713|ref|ZP_06619095.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
gi|292632522|gb|EFF51118.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD
CMC 3f]
Length = 621
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|266621803|ref|ZP_06114738.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
DSM 13479]
gi|288866492|gb|EFC98790.1| DNA polymerase III, gamma and tau subunit [Clostridium hathewayi
DSM 13479]
Length = 540
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 105/292 (35%), Positives = 168/292 (57%), Gaps = 11/292 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ VVQ+L N + RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPASFEDVRGQDHVVQTLKNQMVSDRIGHAYLFCGTRGTGKTSIAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PCG CR C + +G S N +E+D + G++ +R I + P +++V
Sbjct: 65 ESPVDGSPCGECRTCKNIAAGSSLNVVEIDAASNNGVENIREIRDEVQ--YPPTEGKYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT++ +P ++ SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSYVIFILATTEVQKIPVTVMSRCQRYDFKRITVDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
IV L+K++ E+++VE AL IA ADG++RDA ++LDQ G+ +T V +++
Sbjct: 183 IVTHLQKLTEAEHISVEDKALAYIAKAADGAMRDALSLLDQCVAFHYGEVLTYDNVLDVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G V +L + + T + ++ E++ G +L + D I
Sbjct: 243 GAVDITVFSQLFRAVVENRTKDCIQSLEEMVIQG-------RELGQFVTDFI 287
>gi|169335258|ref|ZP_02862451.1| hypothetical protein ANASTE_01666 [Anaerofustis stercorihominis DSM
17244]
gi|169257996|gb|EDS71962.1| DNA polymerase III, subunit gamma and tau [Anaerofustis
stercorihominis DSM 17244]
Length = 645
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 208/362 (57%), Gaps = 26/362 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L ++++P F+E+IGQ+ +V L N I I+ YLF G RGTGKTSTAK+F+ ++ C+
Sbjct: 6 LYREFRPKNFEEIIGQDNIVNILKNQIKNDSISHAYLFSGIRGTGKTSTAKVFAKSICCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C CND G + +E+D + +G+D +R LK +P+ R+KV+
Sbjct: 66 NNKEGEACNECASCNDINIGDGADIVEIDAASNRGIDEIRD-LKEKVNYMPNFG-RYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ + A LK LEEPP +VFIF TT+ + + +I SRCQ++ FN+I +
Sbjct: 124 IIDEVHMLTTEAFNALLKTLEEPPSHIVFIFATTEPNKILPTILSRCQRFDFNRIDSEVV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNELVG 698
V L I ++ + E +AL+LIALN +G+LRDA ++LD+ +S++ +IT ++++G
Sbjct: 184 VNHLASILDKKEIEYEKEALELIALNTEGALRDALSLLDKAISVVKDNKITKETADDILG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-IIA------- 750
++S+E++ L + + +D +++ + ++ G + +++QL + IIA
Sbjct: 244 LISDEEIFLLAKGILENDVDKSLNAVHDFLNKGREVGSIITQLMEYYSNKIIAVNVKEPE 303
Query: 751 ------GTYTIGGRSLTEA-----ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
TY SL E+ + +R+ L L++ + +R SE FTA ++ L
Sbjct: 304 KIINKSSTYI---SSLKESFNGLEDSKRISDILYSLAKLKNDMRFFSEPEFLFTAKIINL 360
Query: 800 GS 801
S
Sbjct: 361 CS 362
>gi|386712377|ref|YP_006178699.1| DNA polymerase III subunit gamma/tau [Halobacillus halophilus DSM
2266]
gi|384071932|emb|CCG43422.1| DNA polymerase III gamma/tau subunit [Halobacillus halophilus DSM
2266]
Length = 574
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 174/292 (59%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVWRPKNFEDVVGQTHITRTLQNAIEQDKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + +E+D + G++++R I + PSA +K
Sbjct: 64 CERSPAKEPCNECSACLGIQDGSISDVIEIDAASNNGVEQIREIRDKVKYA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPPQ V+FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPLTIISRCQRFDFKRISQK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V R++ I+A E +++ +AL+++AL A+G +RDA ++LDQ +S + +T V +
Sbjct: 182 AMVERMQGITASEQISIAEEALEIVALTAEGGMRDALSLLDQAVSYSEEEVTIEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ +L E+++ + + ++ +L+ G DP + L + DI+
Sbjct: 242 GAVSQGRLAEVVQALHDHEVKDALEAVDDLIQQGKDPGRFVFDLIYYLRDIL 293
>gi|336437526|ref|ZP_08617231.1| hypothetical protein HMPREF0988_02816 [Lachnospiraceae bacterium
1_4_56FAA]
gi|336005141|gb|EGN35190.1| hypothetical protein HMPREF0988_02816 [Lachnospiraceae bacterium
1_4_56FAA]
Length = 531
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 109/286 (38%), Positives = 167/286 (58%), Gaps = 8/286 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ ++ +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPTSFEDVKGQDHIITTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + ++ P+ ++KV
Sbjct: 65 EHPVDGSPCGECAMCRSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYR-PTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRITIDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I AR+ ++ E ++VE A+ IA ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 IAARMNELMEAEQVDVEEKAIRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
G V + LL + D A + EL+ G + +SQLA+
Sbjct: 243 GAVDTDVFSRLLRKIIQRDVAAVLNTVEELVMQGRE----LSQLAA 284
>gi|222152178|ref|YP_002561338.1| DNA polymerase III gamma and tau subunits [Macrococcus caseolyticus
JCSC5402]
gi|222121307|dbj|BAH18642.1| DNA polymerase III gamma and tau subunits homolog [Macrococcus
caseolyticus JCSC5402]
Length = 546
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/347 (31%), Positives = 180/347 (51%), Gaps = 5/347 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++ F+E++GQ V +L N I + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRSQSFEEVVGQKHVTTTLKNAIQKNKISHAYLFNGPRGTGKTSIAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + + +E+D + G+D +R I + P S +K
Sbjct: 64 CTVSTDGEPCNSCDTCVSITKGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PGEST-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP VFI TT+ VP +I SRCQ++ F I
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPAHAVFILATTEPHKVPATIISRCQRFDFKAISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI L + E + + AL+ IA A+G +RDA ++LDQ G + +T V+ +
Sbjct: 182 DIAEHLAYVCRTEGIKYDEGALNFIATTAEGGMRDALSILDQAIAFGTETLTLEHVHSVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA--GTYTI 755
G V E EL + ++ D E K+ L+ G + L++ L + DII
Sbjct: 242 GSVGREDFFELTDYIITHDVKEAFKQFHRLLSEGKETTRLVNDLIYFLRDIIMDYAADNK 301
Query: 756 GGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
G S+ + ++ L + +++ +R + F +++L +
Sbjct: 302 GEESIYQLDIGLLYEMIDKINDTLVSMRFAVNMNVHFEVLIVKLSEL 348
>gi|409351315|ref|ZP_11234081.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
gi|407876823|emb|CCK86139.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
equicursoris CIP 110162]
Length = 652
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 171/292 (58%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++GQ + +L N+I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDAVVGQEAITDTLKNSIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + E+D + +D +R +L + P+ ++K
Sbjct: 64 CLNLQDGEPCNECANCLAADQGAMPDITEMDAASNNSVDEIRELLDKVHYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT++ VP +I SR Q+Y F +I +
Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVIFILATTELQKVPATIISRTQRYNFKRISNA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+V R+ I +E + E AL +IA ADG +RDA ++LDQ LS ++ E+
Sbjct: 182 DLVKRMEYILGQEGVAYEDRALYVIAQVADGGMRDALSILDQLLSFEKDKLLYDDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G + E + +LL ++ D A+ + A++ + +G +++++ SL + I+
Sbjct: 242 GFAAREDIEQLLLALLNRDAAKALDLAKKAIANGASSQNILNEIISLAVQIM 293
>gi|238919040|ref|YP_002932554.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri
93-146]
gi|238868608|gb|ACR68319.1| DNA polymerase III subunit tau, putative [Edwardsiella ictaluri
93-146]
Length = 652
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/331 (33%), Positives = 185/331 (55%), Gaps = 18/331 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLRALDHEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
A+L KI+ E L EP AL L+A A+GS+RDA +++DQ +G+ +IT+ V++++G
Sbjct: 184 RAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLMDQAIAMGQGQITADTVSQMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ +E+ L L+E ++D A + R + GVD +L+++++A + +
Sbjct: 244 LDDEQPLALIEALTAADGALVMARVEQAAGRGVD-------WENLLVEMLALLHRVAMLQ 296
Query: 760 LTEAELE--------RLKHALKLLSEAEKQL 782
L + L+ RL+ ++L A+ QL
Sbjct: 297 LLPSALDSQFAAVEPRLRELARMLPPADLQL 327
>gi|422844197|ref|ZP_16890907.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
gi|325685702|gb|EGD27781.1| DNA polymerase III, gamma/tau subunit DnaX [Lactobacillus
delbrueckii subsp. lactis DSM 20072]
Length = 607
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 178/307 (57%), Gaps = 7/307 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD+++GQ + +L N++ RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +PC C C D G + +E+D + +D +R +L + P+ ++K
Sbjct: 64 CLNLQEGEPCNECSNCLDADQGAMPDIVEMDAASNNSVDEIRDLLDKVHYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP VVFI TT++ VP +I SR Q+Y F + +
Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---RITSSLVNE 695
+V R+ I +E + E AL +IA ADG +RDA ++LDQL K R +L E
Sbjct: 182 AMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDAL--E 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G ++E++ +LL ++ D+ + A+ + G +++++ SL + + T T
Sbjct: 240 VTGFAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTG 299
Query: 756 GGRSLTE 762
G LT+
Sbjct: 300 QGEFLTD 306
>gi|89056367|ref|YP_511818.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
gi|88865916|gb|ABD56793.1| DNA polymerase III subunits gamma and tau [Jannaschia sp. CCS1]
Length = 584
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 168/291 (57%), Gaps = 9/291 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ +V++L N RIA ++ G RGTGKT+TA+I + LNC+
Sbjct: 12 LARKYRPATFADLIGQEAMVRTLKNAFDADRIAQAFMLTGIRGTGKTTTARIIAKGLNCI 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR-YILKHLSAGLPSAS 574
D T PCG C+ C G+ + ME+D + G+ +R I++ +S +A
Sbjct: 72 GADGEGGPTTDPCGVCQNCVAITEGRHVDVMEMDAASNTGVQNIRDAIIETVS--YRAAQ 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+F+IDE H+L + + A LK LEEPP V F+F TT+I VP ++ SRCQ++ +
Sbjct: 130 ARYKIFIIDEVHMLSTSAFNALLKTLEEPPAHVKFLFATTEIRKVPVTVLSRCQRFDLRR 189
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I+ ++A L++I+ E+ + DA+ LI A+GS+RDA ++LDQ G T+ V
Sbjct: 190 IEPEVMIAHLQRIAGLESAEIAEDAVALITRAAEGSVRDAMSLLDQAIAHGAGETTADQV 249
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M+ + A + G DP+ ++ LA +
Sbjct: 250 RAMLGLADRGRVMDLFEAIMAGEAATALDELSAQYADGADPVAVLRDLAEI 300
>gi|150004786|ref|YP_001299530.1| DNA polymerase III [Bacteroides vulgatus ATCC 8482]
gi|149933210|gb|ABR39908.1| putative DNA polymerase III [Bacteroides vulgatus ATCC 8482]
Length = 603
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 18/376 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ+ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPDLTQSGSSR 814
+ PD + R
Sbjct: 359 CAQLTLPDADDASGGR 374
>gi|83859372|ref|ZP_00952893.1| DNA polymerase III subunits gamma and tau [Oceanicaulis sp.
HTCC2633]
gi|83852819|gb|EAP90672.1| DNA polymerase III subunits gamma and tau [Oceanicaulis alexandrii
HTCC2633]
Length = 586
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 176/305 (57%), Gaps = 10/305 (3%)
Query: 445 ALNGEEEEGVLEN-IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRG 503
AL G E E ++ + L++KY+P FD+LIGQ +V++L N + GRIA Y+ G RG
Sbjct: 21 ALPGLEPEAPRDSGYQVLARKYRPQTFDDLIGQEPMVRTLTNAFASGRIAHAYMMTGVRG 80
Query: 504 TGKTSTAKIFSAALNCVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRV 559
GKT+TA++ + ALN + +P R C+ + ME+D ++ G+ +
Sbjct: 81 VGKTTTARLIARALNYETDEVHQPSIRLTPPGRHCDAIARSAHVDVMEMDAASRTGISDI 140
Query: 560 RYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNV 619
R IL + SA R+KV++IDE H+L + + A LK LEEPP+ V FIF TT+I V
Sbjct: 141 REILDGVRYAPVSA--RYKVYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKV 198
Query: 620 PRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLD 679
P ++ SRCQ++ ++ + L +I +EN +VE D L IA A+GS+RDA ++LD
Sbjct: 199 PVTVLSRCQRFDLKRVDRDVLTDHLARICEKENASVECDGLAAIARAAEGSVRDALSLLD 258
Query: 680 QLSL---LGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMV 736
Q + G+ +T+ + +++G+ ++L+LLE A+ + + + R D+G DP V
Sbjct: 259 QAIVQADAGQSVTADQIRDMLGLADRSRVLDLLEAALENRAKDALDELRHQYDTGADPQV 318
Query: 737 LMSQL 741
LM L
Sbjct: 319 LMRDL 323
>gi|49476694|ref|YP_034378.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|228931525|ref|ZP_04094433.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|49328250|gb|AAT58896.1| DNA polymerase III, gamma and tau subunits [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|228828143|gb|EEM73869.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 562
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|154484288|ref|ZP_02026736.1| hypothetical protein EUBVEN_02000 [Eubacterium ventriosum ATCC
27560]
gi|149734765|gb|EDM50682.1| DNA polymerase III, subunit gamma and tau [Eubacterium ventriosum
ATCC 27560]
Length = 541
Score = 197 bits (502), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 121/360 (33%), Positives = 194/360 (53%), Gaps = 21/360 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FD++ GQ+ +VQ+L N I+ RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 20 ALYRKFRPSTFDQVKGQDHIVQTLKNQINANRIGHAYLFCGTRGTGKTSVAKIFAKAVNC 79
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C +G + N +E+D + G+D +R I + PS S ++ V
Sbjct: 80 EHPVDGSPCNECETCRGITNGSAMNVIEIDAASNNGVDNIRQIRDEIQYS-PS-SGKYTV 137
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F +I
Sbjct: 138 YIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEPHKIPITILSRCQRYDFKRISIDT 197
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I ARL ++ +E++ VE A+ +A ADGS+RDA ++LDQ LG+++T V +++
Sbjct: 198 IAARLSELMEKESIEVEDKAIRYVAKAADGSMRDALSLLDQCIAFYLGQKLTYDNVLDVL 257
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP--------------MVLMSQLAS 743
G V E L + SD ++ E++ G +P M++ +
Sbjct: 258 GAVDNEIFSRLTRRVIDSDVTTSLNILDEIIMQGREPGQFVNDFIWYLRNLMLIKTSDDD 317
Query: 744 LIMDIIAGTYTIGGRSLTEAEL---ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
IM++I + EA++ + + +++LSE Q++ SS++ L++L
Sbjct: 318 EIMEVIDASAERIEALKEEAQMVNVDVIMRYIRILSELSGQIKYSSQKRVLIEIALIKLA 377
>gi|384432109|ref|YP_005641469.1| DNA polymerase III subunits gamma and tau [Thermus thermophilus
SG0.5JP17-16]
gi|333967577|gb|AEG34342.1| DNA polymerase III, subunits gamma and tau [Thermus thermophilus
SG0.5JP17-16]
Length = 529
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/325 (35%), Positives = 180/325 (55%), Gaps = 9/325 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P+ F E++GQ V + L+ I GR+A YLF GPRG GKT+TA++ + A+ C
Sbjct: 3 ALYRRFRPLTFQEVVGQEHVKEPLLKAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGC 62
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK--HLSAGLPSASPRF 577
D PCG C C G + +E+D + ++ VR + + HL+ P ++PR
Sbjct: 63 QGED--PPCGVCPHCQAVQRGAHPDVVEIDAASNNSVEDVRELRERIHLA---PLSAPR- 116
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KVF++DE H+L + A LK LEEPP V+F+F TT+ + +P +I SR Q + F ++ +
Sbjct: 117 KVFILDEAHMLSKSAFNALLKTLEEPPPHVLFVFATTEPERMPPTILSRTQHFRFRRLTE 176
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+I +LR+I E +AL L+A ADG+LRDAE++L++ LL +T V +
Sbjct: 177 EEIAFKLRRILEAVGREAEEEALFLLARLADGALRDAESLLERFLLLEGPLTRKEVERAL 236
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+ E L E+ TAE + AR L G P L S L + + + + +GG
Sbjct: 237 GLPPREALAEIAASLARGKTAEALGLARRLYGEGYAPRSLASGLLEVFREGLYAAFGLGG 296
Query: 758 RSLTEAELERLKHALKLLSEAEKQL 782
L A + L A+ L EA ++L
Sbjct: 297 TPLP-APPQALIAAMTALDEAMERL 320
>gi|239618378|ref|YP_002941700.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
gi|239507209|gb|ACR80696.1| DNA polymerase III, subunits gamma and tau [Kosmotoga olearia TBF
19.5.1]
Length = 503
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 117/349 (33%), Positives = 192/349 (55%), Gaps = 13/349 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L +KY+P F+E++GQ+ V L I IA Y+F GPRGTGKT+TA+I + ALNC+
Sbjct: 8 LYRKYRPKKFEEIVGQDQVKIVLKKAIENQSIAHAYIFFGPRGTGKTTTARILAKALNCL 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ D KPCG C C + + +E+D + +G+D +R I +A +KV+
Sbjct: 68 SHDD-KPCGKCESCIAVDNNSHMDVIEIDAASYRGIDEIRKIRD--AASYRPTMGHYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L + + A LK LEEPP+ +VFI TT+++ VP +I SRCQ + F + +G I
Sbjct: 125 IVDEFHMLTREAFNALLKTLEEPPEHIVFILATTNLEKVPETILSRCQVFTFKPLSEGQI 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
V L++I EE +AL +IA A G +RDA +L++ + G++I V ++G++
Sbjct: 185 VEYLQRILKEEKKTYTVEALKIIAKAAKGGMRDAVNLLERALVFGEKIEEDNVKNILGIL 244
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
EE L L ++ D+ E + + + G ++ Q L D+I S
Sbjct: 245 PEEYLKSYLVAILNGDSDEIIALSENIERLGYSHDSVIRQSIELTKDMI---------SR 295
Query: 761 TEAELERLKHALKLLSEAEKQLRLS-SERCTWFTATLLQLGSMHSPDLT 808
E E ER ++ L E +++R S +++ T+ +L L +M+ P ++
Sbjct: 296 RELEFERGVKLIEKLWEVNREMRYSENKKLTFEVLSLTTLAAMNVPSVS 344
>gi|160886339|ref|ZP_02067342.1| hypothetical protein BACOVA_04349 [Bacteroides ovatus ATCC 8483]
gi|237723209|ref|ZP_04553690.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|423289507|ref|ZP_17268357.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
gi|156108224|gb|EDO09969.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus ATCC
8483]
gi|229447731|gb|EEO53522.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_2_4]
gi|392667218|gb|EIY60728.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus
CL02T12C04]
Length = 621
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|345883785|ref|ZP_08835214.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
gi|345043444|gb|EGW47513.1| hypothetical protein HMPREF0666_01390 [Prevotella sp. C561]
Length = 603
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/373 (30%), Positives = 203/373 (54%), Gaps = 20/373 (5%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPLSFDAVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ ++ +P R+KVF
Sbjct: 68 PTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKALMDQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L++++ +EN+ E +AL +IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 IDHLKRVAEKENIQYEEEALSVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG-------- 751
+ E +++LA+ + +E + +++ G D L++ LAS + +++
Sbjct: 246 LDTENYFNIVDLALENKVSEIMVLLNTVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPL 305
Query: 752 ---TYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM--H 803
+ + R +A+ + L AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSEQLRNRYQQQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 804 SPDLTQSGSSRRQ 816
D+ SG S ++
Sbjct: 366 EDDIPASGRSPKR 378
>gi|325268871|ref|ZP_08135496.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
gi|324988843|gb|EGC20801.1| DNA polymerase III, gamma/tau subunit DnaX [Prevotella multiformis
DSM 16608]
Length = 601
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 199/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ ++ +P R+KVF
Sbjct: 68 PTADGEACNECESCKAFSEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
++ L+ ++ +EN+ E +AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 ISHLKSVAEKENIQYEEEALNVIAEKADGGMRDALSIFDQTASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI 755
+ + +++LA+ + +E + ++++ G D L++ LAS + +++ A T +
Sbjct: 246 LDADNYFHIIDLALENKVSEVMVLLNDVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPL 305
Query: 756 GGRS----------LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
S + L AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LETSQQQRQRYQEQAQRCPVRFLYSALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 DLTQSGSSR 814
D S R
Sbjct: 366 DDDVPASGR 374
>gi|289422936|ref|ZP_06424759.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
anaerobius 653-L]
gi|289156659|gb|EFD05301.1| DNA polymerase III, gamma and tau subunit [Peptostreptococcus
anaerobius 653-L]
Length = 569
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 121/382 (31%), Positives = 209/382 (54%), Gaps = 19/382 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++Y+P+ F+++IGQ+ ++++L+N I+ ++ YLF G RGTGKTSTAKI + A+N
Sbjct: 3 KALYREYRPMVFEDVIGQDHIIKTLINQINTNNLSHAYLFCGTRGTGKTSTAKILARAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C D KPC C+ C + + + +E+D + +D +R L+ P+ S ++K
Sbjct: 63 C-THDGDKPCNVCQSCVSIMDASNLDVIEIDAASNNSVDDIRE-LRDTVKYTPNKS-KYK 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L S + A LK LEEPP V+FI TT+ + +P +I SRCQ++ F +I
Sbjct: 120 VYIIDEVHMLSSGAFNALLKTLEEPPSYVIFILATTEPNKIPATILSRCQRFDFKRIGLD 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V +++ I +EN+++ DAL L+A N GS+RD+ ++LD+ LS I+ V +L+
Sbjct: 180 TLVDKMKFICQKENVDISDDALRLVAKNGQGSVRDSLSILDKCLSFSNGPISMEEVLDLL 239
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G + +L+ L E + SD A ++K + G D +L+ L S+ ++
Sbjct: 240 GAAAPGQLISLSESIIESDVARSMKLVDDYFMWGKDIRLLVEDLTSVFRSMMMMKIFNEA 299
Query: 758 RSLTE---------------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
S+ E + E + L LLSEA +L+ S+ + +++L S
Sbjct: 300 DSVVEFNEEYRNKLLEKSKSVDTEEIIRILNLLSEAIDKLKQSTNQRMTLEIYIMKLASP 359
Query: 803 HSPDLTQSGSSRRQSSRTTEED 824
+ D ++ R + ED
Sbjct: 360 ATDDSYRAIKKRLEVIERMVED 381
>gi|221640167|ref|YP_002526429.1| DNA polymerase III subunits gamma and tau [Rhodobacter sphaeroides
KD131]
gi|221160948|gb|ACM01928.1| DNA polymerase III, subunits gamma and tau [Rhodobacter sphaeroides
KD131]
Length = 582
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 168/290 (57%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I + LNCV
Sbjct: 12 LARKYRPQTFADLIGQDAMVRTLKNAFAADRIAHAFVMTGVRGVGKTTTARIIAKGLNCV 71
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 72 GPDGTGGPTTEPCGQCEPCRAISEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 129
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 130 RYKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLKRI 189
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVN 694
+ ++A L +++ +E + DAL LI A+GS+RDA +++DQ G T+ V
Sbjct: 190 EPEVMMAHLARVAGKEGAELTRDALALITRAAEGSVRDAMSLMDQAIAHGAGETTADQVR 249
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L M + A + G DPM ++ LA +
Sbjct: 250 AMLGLADRGRVLDLFDLVMKGEAAAALAELSGQYADGADPMAVLRDLAEI 299
>gi|218901224|ref|YP_002449058.1| DNA polymerase III subunits gamma and tau [Bacillus cereus AH820]
gi|218540226|gb|ACK92624.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus AH820]
Length = 562
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGAISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|291548744|emb|CBL25006.1| DNA polymerase III, subunits gamma and tau [Ruminococcus torques
L2-14]
Length = 530
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 124/358 (34%), Positives = 192/358 (53%), Gaps = 21/358 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ+ +V +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPSEFEDVKGQDHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + ++ P+ ++KV
Sbjct: 65 EHPVNGSPCGECEMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYR-PTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I R+R + E + VE AL IA ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 ITDRMRDLMQTEQVEVEEKALRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTA-------ETVKRARELMDSGVDPM-----VLMSQLASLI 745
G V + LL + D A + V + REL D +L+ + + I
Sbjct: 243 GAVDTDVFSRLLRKVLERDVAGVLDIVEDLVMQGRELTQLAADFTWYLRNLLLVKTSDNI 302
Query: 746 MDIIAGTYTIGGRSLTE----AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
D++ T L E EL+ L +++ SE QL+ ++++ L++L
Sbjct: 303 EDVL-DVSTENMLQLKEESKMIELDMLLRYIRIFSELSGQLKYATQKRVLLEVALIKL 359
>gi|282852745|ref|ZP_06262087.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
gi|282556487|gb|EFB62107.1| DNA polymerase III, subunit gamma and tau [Lactobacillus gasseri
224-1]
Length = 602
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/289 (35%), Positives = 167/289 (57%), Gaps = 3/289 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD ++ Q + +L N I RG+I+ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDGVVDQTAITDTLKNAIKRGKISHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECENCLAADKGTMNDIIEIDAASNNGVDEIRDIRDKVKYA-PTQG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRIDQH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D++AR+ I +E ++ E AL++IA ADG +RD+ ++LDQ LS ++ ++
Sbjct: 182 DLIARMTYILGQEKIDFEEKALEVIAQVADGGMRDSLSILDQILSYDQDKVKYDDALKIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
G ++EK+ ++L + T+E + L+ G ++ +L SL +
Sbjct: 242 GYAAQEKIEQVLLDLLKGQTSEAFEIVHNLLQDGASTKNILDELISLTV 290
>gi|239637703|ref|ZP_04678673.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
L37603]
gi|239596728|gb|EEQ79255.1| DNA polymerase III subunit gamma/tau [Staphylococcus warneri
L37603]
Length = 566
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 188/350 (53%), Gaps = 6/350 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC + +PC C C G + + +E+D + G+D +R I + PS S
Sbjct: 62 INCTNSTDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-E 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RL+ ++ ++L + +AL+ IA ++G +RDA +++DQ G + +T
Sbjct: 180 LEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
+ G V E L EL + + D + R + + G + L++ + + D I +
Sbjct: 240 VTGSVDEASLNELFKDVVKGDVKASFTRYHQFVTEGKEVNRLINDMIYFVRDTIMNKTSN 299
Query: 755 --IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +L +L+ L + ++++ +R S + F L++L M
Sbjct: 300 QEVEYDALLHFDLDTLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|281425324|ref|ZP_06256237.1| hypothetical protein HMPREF0971_02296 [Prevotella oris F0302]
gi|281400617|gb|EFB31448.1| DNA polymerase III, gamma and tau subunits [Prevotella oris F0302]
Length = 599
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 202/369 (54%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P+ FD ++GQ+ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMTFDAVVGQHALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 522 T-DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C C F +S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PGEDGEACNACESCKAFNEQRSYNIFELDAASNNSVENIKALMEQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ G+
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVGNT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++A+E++ + +AL +IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 IEHLKLVAAKESITYDEEALAVIAEKADGGMRDALSIFDQAASFCQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + ++++ A+++ +E + +++ G D L+ LA+ + +++ T+
Sbjct: 246 LDSDNYFKIIDYALANKVSEIMVLLNGILNKGFDGGNLIGGLAAHVRNVLMARDVQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++ + E+ L ALKLL++ + + SS + TL+Q+ + P
Sbjct: 306 LETSQQQREKYHEQSKKCPVNFLYQALKLLNQCDINYKQSSNKRLLVEITLIQVAQITQP 365
Query: 806 DLTQSGSSR 814
D +G+ R
Sbjct: 366 DDDDAGAGR 374
>gi|196036412|ref|ZP_03103809.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
gi|228912761|ref|ZP_04076410.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|254724164|ref|ZP_05185949.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
A1055]
gi|195991042|gb|EDX55013.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus W]
gi|228846888|gb|EEM91891.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 562
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|115526801|ref|YP_783712.1| DNA polymerase III subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
gi|115520748|gb|ABJ08732.1| DNA polymerase III, subunits gamma and tau [Rhodopseudomonas
palustris BisA53]
Length = 629
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/297 (34%), Positives = 175/297 (58%), Gaps = 15/297 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F+ LIGQ+ +V++L N GRI ++ G RG GKT+TA+I + ALN
Sbjct: 40 RVLARKYRPNSFEHLIGQDAMVRTLSNAFETGRIPQAWILTGVRGVGKTTTARILARALN 99
Query: 519 CVATDQTKPC------GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAG 569
D + G C + G+ + +E+D + G+D VR I +++ AG
Sbjct: 100 YETADGSVKAPTIHMPGPGVHCQAIMEGRHMDVLEMDAASHTGVDDVRQINDSVRYAPAG 159
Query: 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQK 629
R+KV++IDE H+L + + AFLK LEEPP+ F+F TT+I VP ++ SRCQ+
Sbjct: 160 A-----RYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQR 214
Query: 630 YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRI 688
+ +++ +++ L I+A+EN+ +EP+AL +IA A+GS+RD+ ++LDQ ++ +
Sbjct: 215 FDLRRVEADVLMSHLGSIAAKENVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGIV 274
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+ V +++G+ ++++L S D A R+ D+G DP+V++S LA +
Sbjct: 275 RADQVRQMLGLADRTRVIDLFGHLASGDIAAAFAEFRDQYDTGADPVVVLSDLAEFV 331
>gi|445064090|ref|ZP_21376196.1| DNA polymerase III subunits gamma and tau [Brachyspira hampsonii
30599]
gi|444504535|gb|ELV05191.1| DNA polymerase III subunits gamma and tau [Brachyspira hampsonii
30599]
Length = 526
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 216/390 (55%), Gaps = 25/390 (6%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 ENYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ D V +I+SRCQ+Y F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYTFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS+
Sbjct: 181 GIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSAD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
VN +VG + + E ++ MS + + ++L + VDP ++ + +++ I
Sbjct: 241 VNAVVGGNNFSFVKEFFDIIMSENKKSYFEFVKKLFEDAVDPRTFINSIIEYMRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
+G +TE E + LK L + E+++R +S T F +L
Sbjct: 301 SGIDDTKLLEITENERDDLKVFANHYSDDEIERILDYVLLTEERIRNASNPRTIFEMRML 360
Query: 798 QLGSMHSPDLTQSG---SSRRQSSRTTEED 824
L +++ +L + +S Q+S + ED
Sbjct: 361 LL--LNTDNLIRPVDIIASNMQASSSVNED 388
>gi|71894079|ref|YP_278187.1| DNA polymerase III subunits gamma and tau [Mycoplasma synoviae 53]
gi|71850867|gb|AAZ43476.1| DNA polymerase III gamma and tau subunit [Mycoplasma synoviae 53]
Length = 609
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 188/317 (59%), Gaps = 15/317 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E+IGQ+ ++Q+L N IS +IA +LF GP+GTGKTSTA++F+ ALN
Sbjct: 4 KSLYRKYRPQNFHEIIGQDHIIQTLDNVISSEKIAHAFLFAGPKGTGKTSTARVFAKALN 63
Query: 519 CVATD-QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C ++ +++ C C N S + +E+D + G+D +R LK LP S ++
Sbjct: 64 CSHSEVRSQICESCPNQN------SGDIIEMDAASNTGVDEIRN-LKENVDQLPFES-KY 115
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+++IDE H+L + A LK LEEPP V+FI TTD+ VP +I SR Q + F +I +
Sbjct: 116 KIYIIDEVHMLSKSAFNALLKTLEEPPSYVIFILATTDVQKVPITILSRVQSFNFRRISE 175
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS-LLGKRITSSLVNEL 696
IVA+L I +EN++ E +AL LIA + G LRDA T+ +Q+S IT V +
Sbjct: 176 KQIVAQLENILNKENISFEKEALMLIAQLSSGGLRDALTIAEQISNFENNNITKESVRKN 235
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
G+ S ++++++L S + ++ +K+ +L G+DP + + L SL+ + + T G
Sbjct: 236 FGIASNDEIIQVLNDLYSKNISDVLKKLNDLKLWGIDPFLFVLNLISLVKEYLLFRKT-G 294
Query: 757 GRSL----TEAELERLK 769
S +E EL LK
Sbjct: 295 DDSFLNYYSEKELNDLK 311
>gi|30260213|ref|NP_842590.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Ames]
gi|47525274|ref|YP_016623.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
'Ames Ancestor']
gi|49183057|ref|YP_026309.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Sterne]
gi|65317485|ref|ZP_00390444.1| COG2812: DNA polymerase III, gamma/tau subunits [Bacillus anthracis
str. A2012]
gi|165873240|ref|ZP_02217851.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0488]
gi|167635052|ref|ZP_02393369.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0442]
gi|167642050|ref|ZP_02400277.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0193]
gi|170688902|ref|ZP_02880104.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0465]
gi|170707528|ref|ZP_02897981.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0389]
gi|177655681|ref|ZP_02937006.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0174]
gi|190569330|ref|ZP_03022222.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Tsiankovskii-I]
gi|227812696|ref|YP_002812705.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
CDC 684]
gi|229604772|ref|YP_002864674.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
A0248]
gi|254686611|ref|ZP_05150470.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
CNEVA-9066]
gi|254737001|ref|ZP_05194706.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Western North America USA6153]
gi|254744199|ref|ZP_05201880.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Kruger B]
gi|254751190|ref|ZP_05203229.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Vollum]
gi|254761660|ref|ZP_05213678.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
Australia 94]
gi|386733891|ref|YP_006207072.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
H9401]
gi|421511646|ref|ZP_15958500.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
UR-1]
gi|421640994|ref|ZP_16081563.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
BF1]
gi|30253534|gb|AAP24076.1| DNA polymerase III, gamma and tau subunit [Bacillus anthracis str.
Ames]
gi|47500422|gb|AAT29098.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
'Ames Ancestor']
gi|49176984|gb|AAT52360.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Sterne]
gi|164711038|gb|EDR16604.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0488]
gi|167509984|gb|EDR85403.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0193]
gi|167529526|gb|EDR92276.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0442]
gi|170127524|gb|EDS96398.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0389]
gi|170667126|gb|EDT17887.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0465]
gi|172080021|gb|EDT65121.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0174]
gi|190559552|gb|EDV13545.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
Tsiankovskii-I]
gi|227004387|gb|ACP14130.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
CDC 684]
gi|229269180|gb|ACQ50817.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
A0248]
gi|384383743|gb|AFH81404.1| DNA polymerase III, gamma and tau subunits [Bacillus anthracis str.
H9401]
gi|401818313|gb|EJT17529.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
UR-1]
gi|403391889|gb|EJY89156.1| DNA polymerase III subunits gamma and tau [Bacillus anthracis str.
BF1]
Length = 562
Score = 197 bits (502), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|336053584|ref|YP_004561871.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
gi|333956961|gb|AEG39769.1| DNA polymerase III [Lactobacillus kefiranofaciens ZW3]
Length = 597
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 166/287 (57%), Gaps = 3/287 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNKCANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEYVVFILATTELQKVPATIISRTQRYNFKRISKS 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL +IA ADG +RDA ++LDQ LS + + + ++
Sbjct: 182 DLEKRMKYILEQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYNDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
G + E + ++L ++ D +K A++ +D G ++ +L L
Sbjct: 242 GFAARENIEQILLALLNQDAGSALKLAQKELDQGASSKNILDELIDL 288
>gi|337264596|ref|YP_004608651.1| DNA polymerase III subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
gi|336024906|gb|AEH84557.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium
opportunistum WSM2075]
Length = 597
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F EL+GQ +V++L N + GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 13 RVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALN 72
Query: 519 CVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+P C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 73 YKTATVDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVSA- 131
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 132 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 190
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I G +VA L I+ +E ++V+ DAL +IA A+GS RD+ ++LDQ G +++ V
Sbjct: 191 IDAGALVAHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGAGSVSAEAV 250
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D A + R D+G DP +++ LA
Sbjct: 251 RAMLGLADRARIVDLFEHVMKGDVAAVLAEFRAQYDTGADPAAVLTDLAEF 301
>gi|417644573|ref|ZP_12294554.1| DNA polymerase III, subunit gamma and tau [Staphylococcus warneri
VCU121]
gi|445060546|ref|YP_007385950.1| DNA polymerase III subunits gamma and tau [Staphylococcus warneri
SG1]
gi|330684669|gb|EGG96371.1| DNA polymerase III, subunit gamma and tau [Staphylococcus
epidermidis VCU121]
gi|443426603|gb|AGC91506.1| DNA polymerase III subunits gamma and tau [Staphylococcus warneri
SG1]
Length = 566
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/350 (31%), Positives = 188/350 (53%), Gaps = 6/350 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P FD+++GQ V ++L N IS+G+ + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKGKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC + +PC C C G + + +E+D + G+D +R I + PS S
Sbjct: 62 INCTNSTDGEPCNECAICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-E 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNE 695
IV RL+ ++ ++L + +AL+ IA ++G +RDA +++DQ G + +T
Sbjct: 180 LEQIVERLKYVADSQSLPYDDEALEFIAKASEGGMRDALSIMDQAIAFGDEHLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
+ G V E L EL + + D + R + + G + L++ + + D I +
Sbjct: 240 VTGSVDEASLNELFKDVVKGDVKASFTRYHQFVTEGKEVNRLINDMIYFVRDTIMNKTSN 299
Query: 755 --IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ +L +L+ L + ++++ +R S + F L++L M
Sbjct: 300 QDVEYDALLHFDLDTLYRMIDIINDTLVSIRFSVNQSVHFEVLLVKLAEM 349
>gi|118475796|ref|YP_892947.1| DNA polymerase III subunits gamma and tau [Bacillus thuringiensis
str. Al Hakam]
gi|196041973|ref|ZP_03109260.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
NVH0597-99]
gi|196047689|ref|ZP_03114893.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB108]
gi|225862075|ref|YP_002747453.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB102]
gi|229089155|ref|ZP_04220438.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
gi|229182417|ref|ZP_04309670.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
gi|376264050|ref|YP_005116762.1| DNA polymerase III subunits gamma and tau [Bacillus cereus F837/76]
gi|118415021|gb|ABK83440.1| DNA polymerase III, tau subunit [Bacillus thuringiensis str. Al
Hakam]
gi|196021474|gb|EDX60177.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB108]
gi|196027228|gb|EDX65848.1| DNA polymerase III, gamma and tau subunit [Bacillus cereus
NVH0597-99]
gi|225787266|gb|ACO27483.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus
03BB102]
gi|228601063|gb|EEK58630.1| DNA polymerase III subunit gamma/tau [Bacillus cereus BGSC 6E1]
gi|228694178|gb|EEL47858.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-42]
gi|364509850|gb|AEW53249.1| DNA polymerase III subunits gamma and tau [Bacillus cereus F837/76]
Length = 562
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|57234625|ref|YP_181327.1| DNA polymerase III, gamma and tau subunits [Dehalococcoides
ethenogenes 195]
gi|57225073|gb|AAW40130.1| DNA polymerase III, gamma and tau subunits, putative
[Dehalococcoides ethenogenes 195]
Length = 559
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 160/274 (58%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S GRIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 66
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R + + + A +KV+
Sbjct: 67 NQGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYA--PALANYKVY 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 125 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDM 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E +N+EP+AL LIA +A GS RD E +L Q+ + G I+ V +G+
Sbjct: 185 SRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGI 244
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D ++ ++ G+D
Sbjct: 245 SGDERIKTLAENILKKDIKNGLQTLNAVVADGID 278
>gi|423080911|ref|ZP_17069525.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
002-P50-2011]
gi|423086357|ref|ZP_17074764.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
050-P50-2011]
gi|357547150|gb|EHJ29046.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
050-P50-2011]
gi|357551861|gb|EHJ33643.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
002-P50-2011]
Length = 545
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 172/284 (60%), Gaps = 3/284 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F+++IGQ+ ++++L N I I YLF G RGTGKTSTAKIFS A+N
Sbjct: 3 KALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C + + + +E+D + +D +R + + S A+ ++K
Sbjct: 63 CLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRE--SVKYSPANAKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F ++
Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
D+ R++KI +E ++++ AL+LIA N+ G+LRDA ++LDQ G+ +I V EL+
Sbjct: 181 DMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELM 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G V+ E+L EL + + DT ++++ E + G D L++ L
Sbjct: 241 GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284
>gi|338707396|ref|YP_004661597.1| DNA polymerase III subunits gamma and tau [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294200|gb|AEI37307.1| DNA polymerase III, subunits gamma and tau [Zymomonas mobilis
subsp. pomaceae ATCC 29192]
Length = 627
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 168/293 (57%), Gaps = 8/293 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ+ +V++L N I+R R+A +L G RG GKTSTA++ + ALN
Sbjct: 12 RVLARKYRPQHFSDLIGQDAMVRTLGNAIARDRLAHAFLLTGVRGVGKTSTARLIAKALN 71
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C G+ + +E+D + G+D +R I++ S S
Sbjct: 72 CIGPDGKGGMTIDPCGNCEPCRAIAEGRHIDVIEMDAASHTGVDDIREIVE--SVRYASV 129
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S RFKV++IDE H+L + A LK LEEPP V FIF TT+++ VP ++ SRCQ++
Sbjct: 130 SARFKVYIIDEVHMLSKNAFNALLKTLEEPPVHVKFIFATTEVNKVPITVLSRCQRFDLR 189
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I + KI+ +E + E +AL LIA A+GS+RD ++LDQ ++ ++ ++
Sbjct: 190 RISSSLLAEYFTKIAHQEQVVAEDEALALIAKAAEGSVRDGLSILDQAIAHSAGQVIAAD 249
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
V +++G+ + L + AE + + D G++P L+ L ++
Sbjct: 250 VRDMLGLSDGSVIRSLFSALLQGQGAEVLDHIKAQYDLGIEPEALIQGLLQIV 302
>gi|319779807|ref|YP_004139283.1| DNA polymerase III subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
gi|317165695|gb|ADV09233.1| DNA polymerase III, subunits gamma and tau [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 605
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 108/299 (36%), Positives = 170/299 (56%), Gaps = 7/299 (2%)
Query: 451 EEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTA 510
E G R L++KY+P F EL+GQ +V++L N + GRIA ++ G RG GKT+TA
Sbjct: 13 EIGKAAAYRVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTA 72
Query: 511 KIFSAALNCVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHL 566
+I + ALN D +P C + G+ + +E+D + G+D +R I++ +
Sbjct: 73 RILARALNYKTADIDQPSVDLAVLGEHCLAIMEGRHVDVIEMDAASHTGIDDIRDIIERV 132
Query: 567 SAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSR 626
SA R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SR
Sbjct: 133 RYAPVSA--RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSR 190
Query: 627 CQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK 686
CQ++ +I G +V L ISA+E ++V+ DAL +IA A+GS RD+ ++LDQ G
Sbjct: 191 CQRFDLRRIDAGALVGHLASISAKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGA 250
Query: 687 -RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+ + V ++G+ ++++L E M D A + R D+G DP +++ LA
Sbjct: 251 GSVGADAVRAMLGLADRARIVDLFEHVMKGDVAAALGEFRAQYDTGADPAAVLTDLAEF 309
>gi|52145193|ref|YP_081637.1| DNA polymerase III subunits gamma and tau [Bacillus cereus E33L]
gi|51978662|gb|AAU20212.1| DNA polymerase III, gamma and tau subunits [Bacillus cereus E33L]
Length = 562
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +R+T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|110799164|ref|YP_694518.1| DNA polymerase III subunits gamma and tau [Clostridium perfringens
ATCC 13124]
gi|422347974|ref|ZP_16428882.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
WAL-14572]
gi|110673811|gb|ABG82798.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
ATCC 13124]
gi|373223070|gb|EHP45424.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
WAL-14572]
Length = 547
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 224/442 (50%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S EA K ++ Q QN
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNEASNNKTLNNKQ---QNVTQ 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|395789283|ref|ZP_10468806.1| DNA polymerase III, subunit gamma and tau [Bartonella taylorii
8TBB]
gi|395430330|gb|EJF96374.1| DNA polymerase III, subunit gamma and tau [Bartonella taylorii
8TBB]
Length = 646
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 170/291 (58%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQSFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + P A+
Sbjct: 71 YKTKDIDQPTTVLNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYR-PVAA 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + A LR+I+ EN+ VE AL +I A+GS+RDA ++ DQ ++ +++ V
Sbjct: 189 IESTILSAHLRQIAKRENVEVEDQALSMIVRAAEGSVRDALSIFDQAIAHSYGNVSALAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 249 RAMLGLADQARVIDLFEFIMKGNVVNALHELRSQYDAGADPLTILTELADF 299
>gi|423312271|ref|ZP_17290208.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
CL09T03C04]
gi|392688755|gb|EIY82039.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
CL09T03C04]
Length = 603
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 194/368 (52%), Gaps = 18/368 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ+ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPD 806
+ PD
Sbjct: 359 CAQLTLPD 366
>gi|339320156|ref|YP_004679851.1| DNA polymerase III subunits gamma and tau [Candidatus Midichloria
mitochondrii IricVA]
gi|338226281|gb|AEI89165.1| DNA polymerase III, gamma/tau subunits [Candidatus Midichloria
mitochondrii IricVA]
Length = 511
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 109/316 (34%), Positives = 184/316 (58%), Gaps = 12/316 (3%)
Query: 438 QDGLEIVALNGEEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYL 497
QD L I +EE ++ + L++KY+P F+ELIGQ+I+V++L N I R L
Sbjct: 2 QDSLFI-----QEELNKNKSYKVLARKYRPKSFNELIGQDILVRTLTNAIKMNRFPHAIL 56
Query: 498 FQGPRGTGKTSTAKIFSAALNCVATD----QTKPCGYCRECNDFISGKSRNFMEVDGTNK 553
G RGTGKT+TA+I + +NC + D PC C C S + + +E+D +
Sbjct: 57 LTGIRGTGKTTTARIITKIMNCQSIDLQNESLSPCERCDSCVSIASSQHTDILEMDAASH 116
Query: 554 KGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFIT 613
++ VR I+++ A S RF+ ++IDE H+L + + A LK LEEPPQ ++FIF T
Sbjct: 117 TSVNDVRVIIEN--AYYAPVSSRFRAYIIDEVHMLSTSAFNALLKTLEEPPQHLIFIFAT 174
Query: 614 TDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRD 673
T+I +P +I SRCQ++ ++ + + I +EN+++E +A+DLI ADGS+RD
Sbjct: 175 TEIQKIPLTILSRCQRFDLRRVSTEVLKSHYLNILKQENISIENEAIDLIVKAADGSVRD 234
Query: 674 AETMLDQ-LSLLGKRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGV 732
++LDQ ++L I L+ +++ + ++ +++EL ++ D E + L +SG
Sbjct: 235 GLSILDQAIALSHGTIKGELIRDMLCINNKVQIIELFMYLIAGDVEELLNLVANLYNSGG 294
Query: 733 DPMVLMSQLASLIMDI 748
DP+++ +QL L+ +I
Sbjct: 295 DPVMIANQLLELVYEI 310
>gi|126697582|ref|YP_001086479.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
630]
gi|255099173|ref|ZP_05328150.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-63q42]
gi|255654098|ref|ZP_05399507.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-23m63]
gi|296452477|ref|ZP_06894176.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP08]
gi|296878245|ref|ZP_06902255.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP07]
gi|423089329|ref|ZP_17077690.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
70-100-2010]
gi|115249019|emb|CAJ66830.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
630]
gi|296258683|gb|EFH05579.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP08]
gi|296430753|gb|EFH16590.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
NAP07]
gi|357558319|gb|EHJ39816.1| DNA polymerase III, subunit gamma and tau [Clostridium difficile
70-100-2010]
Length = 545
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 172/284 (60%), Gaps = 3/284 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F+++IGQ+ ++++L N I I YLF G RGTGKTSTAKIFS A+N
Sbjct: 3 KALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C + + + +E+D + +D +R + + S A+ ++K
Sbjct: 63 CLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRE--SVKYSPANAKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F ++
Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
D+ R++KI +E ++++ AL+LIA N+ G+LRDA ++LDQ G+ +I V EL+
Sbjct: 181 DMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELM 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G V+ E+L EL + + DT ++++ E + G D L++ L
Sbjct: 241 GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284
>gi|196229725|ref|ZP_03128589.1| DNA polymerase III, subunits gamma and tau [Chthoniobacter flavus
Ellin428]
gi|196226051|gb|EDY20557.1| DNA polymerase III, subunits gamma and tau [Chthoniobacter flavus
Ellin428]
Length = 598
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/268 (38%), Positives = 156/268 (58%), Gaps = 2/268 (0%)
Query: 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCREC 534
Q +V +L N I++ R+A YLF GPRGTGKTSTA+IF+ ALNCV T PCG C C
Sbjct: 5 AQAHIVTTLKNAIAQNRLAQAYLFVGPRGTGKTSTARIFAKALNCVHAPTTNPCGVCDMC 64
Query: 535 NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWL 594
+ +G S N +E D + +D++R I+ P+ +K++++DE H+L + ++
Sbjct: 65 KEIAAGNSLNVLEFDAASNTQVDKIREIIIDNVKYAPTRG-NYKLYIVDEVHMLSNSSFN 123
Query: 595 AFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLN 654
A LK LEEPP V F+F TTD+ VP +I SRCQ++ +I +I L I+ +E +
Sbjct: 124 ALLKTLEEPPPHVKFVFATTDVQKVPTTIISRCQRFDLRRIPTPEIAQHLLFIAGKEAIE 183
Query: 655 VEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGVVSEEKLLELLELAM 713
+ P A + IA A+G LRDAE+MLDQL + G +I V + G + + + EL E +
Sbjct: 184 LTPTAAESIARGAEGGLRDAESMLDQLVAFCGDKIDEQNVLNIFGFTARQTVAELCEHLI 243
Query: 714 SSDTAETVKRARELMDSGVDPMVLMSQL 741
+ T + ++ D+G D LM+ L
Sbjct: 244 NGHTGAALGAIQKQSDAGKDLSRLMADL 271
>gi|254973666|ref|ZP_05270138.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-66c26]
gi|255091057|ref|ZP_05320535.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
CIP 107932]
gi|255312711|ref|ZP_05354294.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-76w55]
gi|255515471|ref|ZP_05383147.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-97b34]
gi|255648563|ref|ZP_05395465.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-37x79]
gi|260681785|ref|YP_003213070.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
CD196]
gi|260685382|ref|YP_003216515.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
R20291]
gi|306518692|ref|ZP_07405039.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
QCD-32g58]
gi|384359335|ref|YP_006197187.1| DNA polymerase III subunits gamma and tau [Clostridium difficile
BI1]
gi|260207948|emb|CBA60069.1| DNA polymerase III subunit gamma/tau [Clostridium difficile CD196]
gi|260211398|emb|CBE01472.1| DNA polymerase III subunit gamma/tau [Clostridium difficile R20291]
Length = 545
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 172/284 (60%), Gaps = 3/284 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P F+++IGQ+ ++++L N I I YLF G RGTGKTSTAKIFS A+N
Sbjct: 3 KALYRAYRPQKFEDVIGQDHIIKTLKNQIYSDNIGHAYLFCGTRGTGKTSTAKIFSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C + + + +E+D + +D +R + + S A+ ++K
Sbjct: 63 CLNKINEEPCNECEICESVLKDNTMDVVEIDAASNNSVDDIRELRE--SVKYSPANAKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F ++
Sbjct: 121 VYIIDEVHMLSQGAFNALLKTLEEPPSYVIFILATTEPHKIPATILSRCQRYDFKRVTVK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
D+ R++KI +E ++++ AL+LIA N+ G+LRDA ++LDQ G+ +I V EL+
Sbjct: 181 DMTLRMKKICEDEGIDIDDKALNLIARNSQGALRDALSILDQCMSFGESKIDYKDVVELM 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G V+ E+L EL + + DT ++++ E + G D L++ L
Sbjct: 241 GSVNIEQLFELSQCIVEQDTKKSLEILNEFVLWGKDIRNLINDL 284
>gi|322417711|ref|YP_004196934.1| DNA polymerase III subunits gamma and tau [Geobacter sp. M18]
gi|320124098|gb|ADW11658.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M18]
Length = 575
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 104/248 (41%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ V Q+L N I GR+A +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PC C C + G S + E+DG + G+D +R + ++ LPS S R+K+F
Sbjct: 66 SGLTVEPCNSCSTCLEITDGNSVDVFEIDGASNTGVDDIRELRDNIKY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+RLR I +E + V +AL ++A DGS+RD+ + LDQ L+ G ++ + V L+GV
Sbjct: 184 VSRLRYIVDQEGVQVSDEALSVVARKGDGSMRDSLSTLDQVLAFCGNSVSDADVAALLGV 243
Query: 700 VSEEKLLE 707
V ++E
Sbjct: 244 VDRRLIME 251
>gi|336414606|ref|ZP_08594952.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
gi|335933718|gb|EGM95720.1| hypothetical protein HMPREF1017_02060 [Bacteroides ovatus
3_8_47FAA]
Length = 621
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|336399730|ref|ZP_08580530.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
gi|336069466|gb|EGN58100.1| DNA polymerase III, tau subunit [Prevotella multisaccharivorax DSM
17128]
Length = 604
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/452 (27%), Positives = 231/452 (51%), Gaps = 44/452 (9%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
++N ++KY+P+ F ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MDNYIVSARKYRPMTFSSVVGQEALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
A+NC T + C C C F G+S N E+D + ++ ++ +++ +P
Sbjct: 61 KAINCENPTQDGEACNECESCRAFNEGRSMNIFELDAASNNSVENIKTLMEQ--TLIPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ R+KVF+IDE H+L + AFLK LEEPP V+FI TT+ + + +I SRCQ Y F
Sbjct: 119 TGRYKVFIIDEVHMLSQAAFNAFLKTLEEPPAHVIFILATTEKNKILPTILSRCQIYDFE 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSL 692
++ +I+ L ++ +E + E +AL++IA ADG +RDA ++ DQ+ S IT
Sbjct: 179 RMTVPEIIRHLEMVAGKEGITYEEEALNVIAEKADGGMRDALSIFDQVASFCQGHITYEK 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ + ++++L++ + A+ + ++ G D +++ LAS + +++
Sbjct: 239 VLQDLNVLDADNYFKIIDLSLENKAADIMVLLDSIIQRGFDGSNVINGLASHVRNVMMAK 298
Query: 753 --YTIGGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQ 798
T+ +++ + ++ K ALK+L+E + Q R SS + TL++
Sbjct: 299 DEQTLPLLEVSQNQRQKYKDQAAKCPQTFLYQALKILNECDVQYRQSSNKRLLVELTLIR 358
Query: 799 LGSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREPV 858
+ + P+ +ED + R + K + + N V P + + V
Sbjct: 359 VAQITQPE---------------DEDAPAGGRSPMQLKSL----FKKNNLVQPKPVMQ-V 398
Query: 859 NGNSRHLGEVLS------RIDGHNSYSKPSHS 884
G +R L + + D ++ SKP H+
Sbjct: 399 TGAARRLSTHTAVHDEPKKTDPSDTPSKPEHN 430
>gi|304315581|ref|YP_003850726.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777083|gb|ADL67642.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 533
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 205/363 (56%), Gaps = 16/363 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQN +V++L N I GRI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C+ C + + +E+D + +D VR + ++ PS ++K
Sbjct: 63 CPNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYA-PSIC-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ + +P +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
I + KI+ + N+N+E A+ +IA + +GS+RDA ++L+Q +T V +++G
Sbjct: 181 VISQNIGKIAKDSNINIENRAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCDILG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYT 754
V+++ L L++ + E + + +LM G+D L+ + S + DI+ GT +
Sbjct: 241 TVNDDTLYTLVKRINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDIVIYKTCGTES 300
Query: 755 -------IGGRSL--TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH-S 804
I + L +E ++ L +A++ L + + ++R + F T+L+L + S
Sbjct: 301 EEILETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLMNPEIS 360
Query: 805 PDL 807
PD+
Sbjct: 361 PDI 363
>gi|333372985|ref|ZP_08464906.1| DNA polymerase III, gamma/tau subunit DnaX, partial [Desmospora sp.
8437]
gi|332971339|gb|EGK10302.1| DNA polymerase III, gamma/tau subunit DnaX [Desmospora sp. 8437]
Length = 356
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 105/290 (36%), Positives = 164/290 (56%), Gaps = 3/290 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R+L + ++P F++LIGQ V +L N ++ G + YLF GPRGTGKTS AKI + A+N
Sbjct: 4 RALYRVWRPQKFEDLIGQEHVTTTLKNALAEGHFSHAYLFSGPRGTGKTSAAKIMAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + +E+D + +G+D +R + + PS R K
Sbjct: 64 CLQGPAPEPCNECDACRKITEGSLMDVVEIDAASNRGVDEIRDLRDKVKYA-PS-EVRCK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L ++ + A LK LEEPP +FI TT+ +P +I SRCQ++ F + G
Sbjct: 122 VYIVDEVHMLTAEAFNALLKTLEEPPGHAIFILATTEPHKLPSTIISRCQRFSFRRHTLG 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+ + LRKI + + E AL +IA ADG +RDA ++LDQ L+ R+ + V +
Sbjct: 182 NTLGHLRKICDSQGIQAEDSALAVIAQAADGGMRDALSLLDQVLAFSDDRVDEAAVLSVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
G VS L +L+E + D +++ EL+ G++P L+ L L D
Sbjct: 242 GSVSRATLGDLMEACLGRDAGTALEKVEELLADGLEPERLIHDLVQLSRD 291
>gi|288802676|ref|ZP_06408114.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
gi|288334826|gb|EFC73263.1| DNA polymerase III, gamma and tau subunit protein [Prevotella
melaninogenica D18]
Length = 603
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/369 (30%), Positives = 199/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ ++ +P R+KVF
Sbjct: 68 PTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L++++ +EN+ + +AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 INHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ E +++LA+ + +E + +++ G D L++ LAS + +++ T+
Sbjct: 246 LDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDVQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++E R L AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSEQLRNRYQLQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 DLTQSGSSR 814
D S R
Sbjct: 366 DDDVPASGR 374
>gi|148260992|ref|YP_001235119.1| DNA polymerase III subunits gamma and tau [Acidiphilium cryptum
JF-5]
gi|146402673|gb|ABQ31200.1| DNA polymerase III, subunits gamma and tau [Acidiphilium cryptum
JF-5]
Length = 614
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 168/297 (56%), Gaps = 10/297 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ R L++KY+P FD+LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I +
Sbjct: 41 ESYRVLARKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTARILAR 100
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNC D PCG C C ++ + + +E+D + G+D VR I++ +
Sbjct: 101 ALNCTGADGQGGPTPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREIIE--ATRF 158
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
R KVF++DE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 159 RPMIARTKVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLSRCQRF 218
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---GKR 687
++ + A +I+ +E + VE ALD +A ADGS+RD ++LDQ G
Sbjct: 219 DLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLLDQAIARADEGAP 278
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+T+ LV +++G+ + +LLE + D A + ++G DP+++M L L
Sbjct: 279 VTAELVADMLGLADRGMVFDLLEAVAAGDPAGALGVMDRAHEAGADPVLVMQDLLGL 335
>gi|168210522|ref|ZP_02636147.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
B str. ATCC 3626]
gi|168217757|ref|ZP_02643382.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
NCTC 8239]
gi|170711454|gb|EDT23636.1| DNA polymerase III, subunit gamma and tau [Clostridium perfringens
B str. ATCC 3626]
gi|182380192|gb|EDT77671.1| DNA polymerase III, gamma and tau subunits [Clostridium perfringens
NCTC 8239]
Length = 547
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 130/442 (29%), Positives = 224/442 (50%), Gaps = 33/442 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++++P F++++GQ + +L N I R A YLF G RGTGKTSTAK+ + ALN
Sbjct: 4 KALYREWRPQTFNDVVGQEHITTTLKNQIINERTAHAYLFCGTRGTGKTSTAKVMAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + + E+D + G+D +R I+ + P RFK
Sbjct: 64 CLDLKDGEPCNQCEMCKKINEGLAIDITELDAASNNGVDNIRDIIDDVQ--YPPQEARFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +I
Sbjct: 122 VYIMDEVHMLSIGAVNAFLKTLEEPPKNVVFILATTDPQKLPITILSRCQRFDFKRISRK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DI RLRKI E+ + + +LDL+A +DG++RD+ ++LDQ +G ++ + ++
Sbjct: 182 DITGRLRKIVTEQGIFCDDKSLDLVARVSDGAMRDSLSILDQAISIGDGKVDYDELVSML 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+V+ + L ++++ + D ++ EL+ +G D + + L +++ T
Sbjct: 242 GLVTNDNLFKIVDSIIKRDIESAMEIIEELVLTGKDMTLFIKDLIVHYRNLLMIKVTSNP 301
Query: 758 RSL---TEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ E +E+LK ++++ E +++ +LS + + ++++ +
Sbjct: 302 EEVLDTAEENIEKLKVQGAKLKVEEIMRCIRIVQECDEEAKLSKQARVYLELAVIKMCKI 361
Query: 803 HSP-----------DLTQS-GSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVS 850
L Q+ S Q + EE S S E K ++ Q QNA
Sbjct: 362 EYDTSKEVMLARINKLEQAIRSGNIQVNTNLEEVKSQVSNETSNNKTLNNKQ---QNATK 418
Query: 851 PASLREPVNGNSRHLGEVLSRI 872
++ E VN NS E L ++
Sbjct: 419 SSNNYEVVNENSTLTPEYLRKV 440
>gi|168184981|ref|ZP_02619645.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|237793342|ref|YP_002860894.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
gi|182671955|gb|EDT83916.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
Bf]
gi|229262232|gb|ACQ53265.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
Ba4 str. 657]
Length = 541
Score = 197 bits (501), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 114/356 (32%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +IK+ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIKNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRDIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|444359866|ref|ZP_21161148.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
cenocepacia BC7]
gi|443601339|gb|ELT69484.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
cenocepacia BC7]
Length = 370
Score = 197 bits (501), Expect = 4e-47, Method: Composition-based stats.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|444371433|ref|ZP_21170992.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
cenocepacia K56-2Valvano]
gi|443595489|gb|ELT64073.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
cenocepacia K56-2Valvano]
Length = 375
Score = 197 bits (501), Expect = 4e-47, Method: Composition-based stats.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|83720172|ref|YP_442740.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis E264]
gi|83653997|gb|ABC38060.1| DNA polymerase III, subunits gamma and tau, programmed
[Burkholderia thailandensis E264]
Length = 812
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|338980611|ref|ZP_08631875.1| DNA polymerase III subunits gamma and tau [Acidiphilium sp. PM]
gi|338208506|gb|EGO96361.1| DNA polymerase III subunits gamma and tau [Acidiphilium sp. PM]
Length = 614
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 168/297 (56%), Gaps = 10/297 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ R L++KY+P FD+LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I +
Sbjct: 41 ESYRVLARKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTARILAR 100
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNC D PCG C C ++ + + +E+D + G+D VR I++ +
Sbjct: 101 ALNCTGVDGQGGPTPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREIIE--ATRF 158
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
R KVF++DE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 159 RPMIARTKVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLSRCQRF 218
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---GKR 687
++ + A +I+ +E + VE ALD +A ADGS+RD ++LDQ G
Sbjct: 219 DLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLLDQAIARADEGAP 278
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+T+ LV +++G+ + +LLE + D A + ++G DP+++M L L
Sbjct: 279 VTAELVADMLGLADRGMVFDLLEAVAAGDPAGALGVMDRAHEAGADPVLVMQDLLGL 335
>gi|288554626|ref|YP_003426561.1| DNA polymerase III subunits gamma and tau [Bacillus pseudofirmus
OF4]
gi|288545786|gb|ADC49669.1| DNA polymerase III gamma and tau subunits [Bacillus pseudofirmus
OF4]
Length = 561
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 135/480 (28%), Positives = 240/480 (50%), Gaps = 49/480 (10%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P +++GQ + ++L N + + + + YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRVWRPQQLRDVVGQEHITKTLQNALLQNKFSHAYLFSGPRGTGKTSAAKIIAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C SG + ME+D + G+D +R I + P+ P +K
Sbjct: 64 CEKAPVAEPCNECAACKGITSGAIVDVMEIDAASNNGVDEIRDIRDKVKFA-PNEVP-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ++ F +I +
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPGHVIFILATTEPHKIPLTIISRCQRFDFKRIPNT 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV R+ +I + + V+ +AL++IA ADG +RDA ++LDQ +S +T V +
Sbjct: 182 AIVGRMNEILLHDGIEVDDEALNMIARAADGGMRDALSLLDQAISYAEGPLTLEDVLAIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G VSE+ L+ L+E + D+A ++ +L+ G +P ++ L + D++
Sbjct: 242 GAVSEQVLVNLVEAVANKDSAVVLESLDQLVRDGKEPGRILEDLIYYMRDLLLCKTAPDS 301
Query: 758 RSLTE--------------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+ L E + L A+++L+ + ++++ S+ L++L +
Sbjct: 302 KDLLERADSGDIAVSLSEQFDFPWLYQAIEVLNGSVQEMKWSTHPKVILEMALIRLVN-Q 360
Query: 804 SPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG---PQYM---------------- 844
P + +GS + S + + S E VV + +G P M
Sbjct: 361 RPSESSAGSEVK-SETVKQLEAKIISLEKVVKQLQAGGGTPSTMGDSASQQSVRRPKKQI 419
Query: 845 PQNAVSPASLREPVNGNSR--------HLGEVLSRIDGHNSYSKPSHSRLKDAGALAVSQ 896
PQ V+ + ++E + G S+ G V+ ++ N P+H+ L D+ +A ++
Sbjct: 420 PQTRVNTSKVKELLKGASKQELQKVTGQWGSVMEQVKAQNI---PAHAWLSDSRPVAAAE 476
>gi|167845385|ref|ZP_02470893.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei B7210]
Length = 391
Score = 197 bits (501), Expect = 4e-47, Method: Composition-based stats.
Identities = 118/385 (30%), Positives = 197/385 (51%), Gaps = 15/385 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL +A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQLGSMHSPDL 807
E L+ +LLS + QL L+ + FT TLL++ +
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPATT 363
Query: 808 TQSGSSRRQSSRTTEEDPSSTSREA 832
+ +R P S +R A
Sbjct: 364 GGGAPAGGVPARVAGAAPKSGARAA 388
>gi|403389620|ref|ZP_10931677.1| DNA polymerase III subunits gamma and tau [Clostridium sp. JC122]
Length = 542
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 182/319 (57%), Gaps = 4/319 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++GQN + +L N I RIA YL G RGTGKTSTAKIFS A+NC
Sbjct: 5 ALYRKFRPQKFEDVVGQNHISTTLKNAIKSERIAHAYLLCGTRGTGKTSTAKIFSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + +PC C C +G + + +E+D + +D +R I+ + P ++KV
Sbjct: 65 LNSQDGEPCNECEMCIKINNGTAIDVVELDAASHNKVDNIRDIIDDVQ--YPPQESKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L AFLK LEEPP V+FI TTD +P +I SRCQK+ F +IK+ D
Sbjct: 123 YIIDEVHMLSQGAVNAFLKTLEEPPSYVIFILATTDPQKLPITILSRCQKFDFKRIKNDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL++I+ + E +L LI+ DG++RDA ++LDQ +S+ ++ + +++G
Sbjct: 183 IFLRLKQITDILGVYAEDKSLKLISRICDGAMRDALSILDQAISMSNNKVEYENIVKMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+++ + L+ L + +S D VK + SG D + + + D++ T
Sbjct: 243 LMTNDDLITLTDFIISKDIEGAVKTINNAISSGKDVNLFIKDFTKHMRDLMMVKVTESPE 302
Query: 759 SLTEAELERLKHALKLLSE 777
+ E +E ++ LKL SE
Sbjct: 303 EVLEMSIENIE-LLKLQSE 320
>gi|319641967|ref|ZP_07996634.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
gi|345521132|ref|ZP_08800463.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
gi|254835484|gb|EET15793.1| DNA polymerase III [Bacteroides sp. 4_3_47FAA]
gi|317386392|gb|EFV67304.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
Length = 603
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 196/376 (52%), Gaps = 18/376 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ+ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQHALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPDLTQSGSSR 814
+ PD + R
Sbjct: 359 CAQLTLPDADDASGGR 374
>gi|255311138|ref|ZP_05353708.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
6276]
gi|255317439|ref|ZP_05358685.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
6276s]
gi|385239847|ref|YP_005807689.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/9768]
gi|385240770|ref|YP_005808611.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/11222]
gi|385242623|ref|YP_005810462.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/9301]
gi|385246233|ref|YP_005815055.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/11074]
gi|296435852|gb|ADH18026.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/9768]
gi|296436778|gb|ADH18948.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/11222]
gi|296437712|gb|ADH19873.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/11074]
gi|297140211|gb|ADH96969.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/9301]
gi|440525250|emb|CCP50501.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
K/SotonK1]
gi|440533284|emb|CCP58794.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
Ia/SotonIa1]
gi|440534178|emb|CCP59688.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
Ia/SotonIa3]
Length = 466
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 6/363 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S++Y+P F E++GQ+IVV L N++ R A Y+F G RGTGKT+ A++F+ ALNC
Sbjct: 8 SRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T +PC C C + G S + +E+DG + +G++ +R I +PS S R+K++
Sbjct: 68 PTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQI-NETVLFVPSKS-RYKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + + LK LEEPP V F TT+I +P +I SRCQK L +I + I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ +L I+ +E +AL IA A GSLRDAE++ D + L + + + +G+
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKALGI 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+SE+ L +L E + + + + + M GV P + + L + Y+ S
Sbjct: 246 LSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSKQFHS 305
Query: 760 L-TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSGSSRRQS 817
+ T+ E L L L E+ + + L+ T+ +++L ++S P +Q S RQ
Sbjct: 306 VATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIYSRPTFSQLVSQIRQP 365
Query: 818 SRT 820
+ T
Sbjct: 366 APT 368
>gi|15605057|ref|NP_219841.1| DNA polymerase III subunits gamma/tau [Chlamydia trachomatis
D/UW-3/CX]
gi|385243541|ref|YP_005811387.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC]
gi|385244421|ref|YP_005812265.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC]
gi|3328753|gb|AAC67929.1| DNA Pol III Gamma and Tau [Chlamydia trachomatis D/UW-3/CX]
gi|297748464|gb|ADI51010.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-EC]
gi|297749344|gb|ADI52022.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis D-LC]
gi|440527926|emb|CCP53410.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
D/SotonD5]
gi|440528817|emb|CCP54301.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
D/SotonD6]
gi|440532391|emb|CCP57901.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
G/SotonG1]
Length = 466
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 6/363 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S++Y+P F E++GQ+IVV L N++ R A Y+F G RGTGKT+ A++F+ ALNC
Sbjct: 8 SRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T +PC C C + G S + +E+DG + +G++ +R I +PS S R+K++
Sbjct: 68 PTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQI-NETVLFVPSKS-RYKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + + LK LEEPP V F TT+I +P +I SRCQK L +I + I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ +L I+ +E +AL IA A GSLRDAE++ D + L + + + +G+
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKALGI 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+SE+ L +L E + + + + + M GV P + + L + Y+ S
Sbjct: 246 LSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSKQFHS 305
Query: 760 L-TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSGSSRRQS 817
+ T+ E L L L E+ + + L+ T+ +++L ++S P +Q S RQ
Sbjct: 306 VATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIYSRPTFSQLVSQIRQP 365
Query: 818 SRT 820
+ T
Sbjct: 366 APT 368
>gi|326404392|ref|YP_004284474.1| DNA polymerase III subunit gamma/tau [Acidiphilium multivorum
AIU301]
gi|325051254|dbj|BAJ81592.1| DNA polymerase III gamma/tau subunit [Acidiphilium multivorum
AIU301]
Length = 614
Score = 197 bits (501), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/297 (35%), Positives = 168/297 (56%), Gaps = 10/297 (3%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E+ R L++KY+P FD+LIGQ+ +V++L N + RIA ++ G RG GKT+TA+I +
Sbjct: 41 ESYRVLARKYRPTTFDDLIGQDGLVRTLRNAFAMNRIAHAFMLTGVRGVGKTTTARILAR 100
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNC D PCG C C ++ + + +E+D + G+D VR I++ +
Sbjct: 101 ALNCTGADGQGGPTPDPCGVCDNCVAILADRHPDVVEMDAASNTGVDDVREIIE--ATRF 158
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
R KVF++DE H+L + A LK LEEPP V F+F TT+I VP ++ SRCQ++
Sbjct: 159 RPMIARTKVFIVDEVHMLSRNAFNALLKTLEEPPPHVKFVFATTEIRKVPITVLSRCQRF 218
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL---GKR 687
++ + A +I+ +E + VE ALD +A ADGS+RD ++LDQ G
Sbjct: 219 DLKRVPVDVLAAHFARIAEKEAVAVEGGALDAVARAADGSVRDGLSLLDQAIARADEGAP 278
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
+T+ LV +++G+ + +LLE + D A + ++G DP+++M L L
Sbjct: 279 VTAELVADMLGLADRGMVFDLLEAVAAGDPAGALGVMDRAHEAGADPVLVMQDLLGL 335
>gi|195953707|ref|YP_002121997.1| DNA polymerase III subunits gamma and tau [Hydrogenobaculum sp.
Y04AAS1]
gi|195933319|gb|ACG58019.1| DNA polymerase III, subunits gamma and tau [Hydrogenobaculum sp.
Y04AAS1]
Length = 421
Score = 197 bits (501), Expect = 4e-47, Method: Composition-based stats.
Identities = 109/314 (34%), Positives = 180/314 (57%), Gaps = 9/314 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
++KY+P F ELIGQ I L N +I Y+F G +GTGKT+TA+IF+ LNC+
Sbjct: 6 FARKYRPKTFKELIGQEIPATILKNAFLYQKIHHAYIFAGHKGTGKTTTARIFAKVLNCL 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PC C C G + +E+D + +G+D +R + + ++ LP ++KV+
Sbjct: 66 NPQEGEPCNACPNCQAIEKGTFVDLIEMDAASNRGIDEIRAV-REGASYLPMQG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK +EEPP ++FI TT+ D + +IQSRCQK +F++ +I
Sbjct: 124 IIDEAHMLTKEAFNALLKTIEEPPPSLIFILCTTEFDKILPTIQSRCQKLVFSRASKENI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGV 699
LR+I+ +EN+ ++ +ALD+++ AD S+RDA ++LDQ S G ++T +V + G
Sbjct: 184 KTYLRRIANQENIEIDEEALDVLSDLADDSMRDAASLLDQASTYGNNKVTIDIVKSMFGP 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V + + + LEL + SDT E + + + G + + + I +I+ + IG
Sbjct: 244 VDKASIRKFLELLIESDTKEAINMLNTINEKGYNVRLFWEGVYKEIKNILKA-FAIG--- 299
Query: 760 LTEAELERLKHALK 773
EAE E K L+
Sbjct: 300 --EAEEEFYKKMLE 311
>gi|302345714|ref|YP_003814067.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
gi|302150079|gb|ADK96341.1| DNA polymerase III, subunit gamma and tau [Prevotella
melaninogenica ATCC 25845]
Length = 603
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/361 (30%), Positives = 198/361 (54%), Gaps = 18/361 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ + +L N + G++A YLF GPRG GKT+ A+IF+ A+NC
Sbjct: 8 ARKYRPMSFDSVVGQQALTTTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F G+S N E+D + ++ ++ ++ +P R+KVF
Sbjct: 68 PTADGEACNECESCKAFGEGRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ +I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMTVPNI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L++++ +EN+ + +AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 INHLKRVAEKENIQFDEEALNVIAEKADGGMRDALSIFDQAASFSQGNITYQKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG-------- 751
+ E +++LA+ + +E + +++ G D L++ LAS + +++
Sbjct: 246 LDAENYFNIIDLALENKVSEIMVLLNSVINKGFDGGHLVNGLASHVRNVLMAKDAQTLPL 305
Query: 752 ---TYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
+ + R +A+ + L AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LEVSEQLRNRYQLQAQKCPVNFLYTALQIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 D 806
D
Sbjct: 366 D 366
>gi|319408027|emb|CBI81681.1| DNA polymerase III gamma and tau subunit [Bartonella
schoenbuchensis R1]
Length = 642
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPC----GYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDIDQPTIALNTLGEHCAQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+++IDE H+L ++ + LK LEEPP + FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKIYIIDEIHMLSTQAFNGLLKTLEEPPPHIKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ +V LRKI+ E + VE AL LI A+GS RDA ++ DQ ++ ++++ V
Sbjct: 189 IESAVLVEYLRKIAKHEKIKVEDQALSLIVRAAEGSARDALSIFDQAIAYSNGKVSTVSV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP +++++L+
Sbjct: 249 RTMLGLADQARIIDLFEFVMKGNIVSALSELRSQYDAGADPFMILTELSDF 299
>gi|418288610|ref|ZP_12901073.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
NM233]
gi|372201520|gb|EHP15438.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
NM233]
Length = 736
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 121/412 (29%), Positives = 208/412 (50%), Gaps = 32/412 (7%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 35 LARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 94
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 95 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 152
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 153 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 212
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + P AL L+ A GS+RDA ++LDQ LG ++ V +++G
Sbjct: 213 ADHLAHVLDSEKIAYAPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAEQDVRQMIGA 272
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIM------- 746
V ++ L ELL ++ D A +ARE+ D+ + + ++ Q +LI
Sbjct: 273 VDKQYLYELLTGIINQDGAALTAKAREMAACAVGFDNALGELAILLQHLALIQAVPNALA 332
Query: 747 ------DIIAG-TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
DI+ TIGG E+++ ++ ++ L L+ + F TLL++
Sbjct: 333 HDDPDSDILHRLAQTIGG--------EQIQLYYQIAVHGKRDLGLAPDEYAGFMMTLLRM 384
Query: 800 GSMHSPDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSP 851
+ +P S + T + PS+ + E + P+ + A +P
Sbjct: 385 LAF-APLAAASCDANAVIENTELQSPSAQTAEKETAAKKPQPRPEAETAQTP 435
>gi|390169442|ref|ZP_10221378.1| DNA polymerase III gamma and tau subunit [Sphingobium indicum B90A]
gi|389587939|gb|EIM65998.1| DNA polymerase III gamma and tau subunit [Sphingobium indicum B90A]
Length = 536
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 16/314 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRNFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C G+ + +E+D + G+D +R I+ AG +
Sbjct: 69 CVGPDGQGGPTIDPCGLCEPCMAIGEGRHIDVLEMDAASHTGVDDIRSIID--IAGKGAY 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP+ V F+ TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSRNAFNALLKTLEEPPEHVKFVLATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL---SLLGK---R 687
+I + A + E++ EPDAL LIA A+GS RD ++LDQ + +G+
Sbjct: 187 RIPAELLAAHFAHVVEAESVAAEPDALALIAQAAEGSARDGLSILDQAIAHAEMGEGAPL 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
+T++ V +++G+ LL L + DT + R+ GV+P+ LM L L+
Sbjct: 247 VTAAQVRDMLGLSDRGATRRLLGLLLEGDTGVLLGAVRDQYALGVEPLSLMRGLLELVHA 306
Query: 748 IIAGTYTIGGRSLT 761
+ T GR +
Sbjct: 307 V---TLVKAGRDIA 317
>gi|395783559|ref|ZP_10463408.1| DNA polymerase III, subunit gamma and tau [Bartonella melophagi
K-2C]
gi|395425681|gb|EJF91841.1| DNA polymerase III, subunit gamma and tau [Bartonella melophagi
K-2C]
Length = 642
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/289 (34%), Positives = 167/289 (57%), Gaps = 7/289 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 13 LARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALNYK 72
Query: 521 ATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
D +P C I G+ + +E+D + G+D +R I++ + SA R
Sbjct: 73 TKDINQPTVALNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA--R 130
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+K+++IDE H+L ++ + LK LEEPP + FIF TT+I VP +I SRCQ++ +I+
Sbjct: 131 YKIYIIDEIHMLSTQAFNGLLKTLEEPPPHIKFIFATTEIRKVPITILSRCQRFDLRRIE 190
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNE 695
+V LRKI+ E + VE AL LI A+GS RDA ++ DQ ++ ++++ V
Sbjct: 191 SAVLVEHLRKIAKHEKIKVEDQALSLIVRAAEGSARDALSIFDQAIAYSNGKVSTVSVRT 250
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M + + R D+G DP +++++L+
Sbjct: 251 MLGLADQARIIDLFEFVMKGNIVSALSELRSQYDAGADPFMILTELSDF 299
>gi|429122862|ref|ZP_19183395.1| DNA polymerase III subunits gamma and tau [Brachyspira hampsonii
30446]
gi|426281317|gb|EKV58316.1| DNA polymerase III subunits gamma and tau [Brachyspira hampsonii
30446]
Length = 527
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/320 (35%), Positives = 188/320 (58%), Gaps = 8/320 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 ENYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRSIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ D V +I+SRCQ+Y F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYTFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS+
Sbjct: 181 GIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSAD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
VN +VG + + E ++ MS + + ++L + VDP ++ + +++ I
Sbjct: 241 VNAVVGGNNFSFVKEFFDIIMSENKKSYFEFVKKLFEDAVDPRTFINSVIEYMRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK 769
+G +TE E + LK
Sbjct: 301 SGIDDTKLLEITENERDDLK 320
>gi|167893928|ref|ZP_02481330.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 7894]
Length = 387
Score = 197 bits (500), Expect = 4e-47, Method: Composition-based stats.
Identities = 118/383 (30%), Positives = 197/383 (51%), Gaps = 15/383 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQLGSMHSPDL 807
E L+ +LLS + QL L+ + FT TLL++ +
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPATT 363
Query: 808 TQSGSSRRQSSRTTEEDPSSTSR 830
+ +R P S +R
Sbjct: 364 GGGAPAGGVPARVAGAAPKSGAR 386
>gi|374852853|dbj|BAL55776.1| DNA polymerase III subunit gamma/tau [uncultured candidate division
OP1 bacterium]
gi|374854201|dbj|BAL57089.1| DNA polymerase III subunit gamma/tau [uncultured candidate division
OP1 bacterium]
gi|374855943|dbj|BAL58798.1| DNA polymerase III subunit gamma/tau [uncultured candidate division
OP1 bacterium]
Length = 508
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 15/377 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +K++P F +++ Q V++L N I +IA YL GPRG GKTS A+IF+ A+N
Sbjct: 8 QSLYRKWRPQRFADVVHQEYTVRTLQNAILSHQIAHAYLLAGPRGVGKTSIARIFAKAIN 67
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C Q +PC C C G + + +E+DG + +G+D++R + + ++ A ++K
Sbjct: 68 CTNPQQGEPCNQCDMCKKITRGNALDVIEIDGASNRGIDQIRQLREEVN--FVPAEAKYK 125
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L ++ + A LK LEEPP+ VVF+F TT+ VP +I SRCQ + +
Sbjct: 126 VYIIDEVHMLTNEAFNALLKTLEEPPKHVVFLFATTEPHKVPLTILSRCQAFELKLLPPE 185
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNEL 696
I RL++I E +N P L IA A G+LRDA ML+QL+ RI + E+
Sbjct: 186 RIEKRLQEICEAEQINASPKVLTAIAHRARGALRDAIVMLEQLASYKGTARIEEHDLFEI 245
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G+ SEE + E L+ ++ ++ +L + G D + + +L D I G
Sbjct: 246 MGLASEETVQEFLKALLTRQGRRALEIIADLAERGKDLELFVDELIEQTRDWIIAALD-G 304
Query: 757 GRSLTEAELER----------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
T A LE LK L E L + + T Q + SP
Sbjct: 305 QPVPTGAPLETLIGLSTQLLGLKRELGRAWEKRILLEVKAVELTHALPAPAQSPAPQSPV 364
Query: 807 LTQSGSSRRQSSRTTEE 823
L SSRR ++TT+E
Sbjct: 365 LVGESSSRRPEAKTTKE 381
>gi|163795453|ref|ZP_02189420.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
gi|159179439|gb|EDP63970.1| DNA polymerase III, gamma/tau subunits [alpha proteobacterium
BAL199]
Length = 610
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 180/318 (56%), Gaps = 11/318 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F++L+GQ +V++L N ++ RI ++ G RG GKT+TA+I + LN
Sbjct: 21 RVLARKYRPQTFEDLVGQETLVRTLRNAFAQNRIHHAFVLTGVRGVGKTTTARIVAKGLN 80
Query: 519 CVATDQT-----KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D T PCG C C + + +E+D ++ G+D +R I++ S
Sbjct: 81 CIGPDGTGGPTMTPCGTCDNCVAIAGDRHVDVLEMDAASRTGVDDIREIIE--SVRYRPV 138
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+KV+++DE H+L + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 139 SARYKVYIVDEVHMLTRNAFNALLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 198
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I + K+ A E + E +AL +IA ADGS RD ++LDQ ++L +T+
Sbjct: 199 RIDVAVLSELFEKVCAAEAVEAEAEALRMIARAADGSARDGLSILDQAMALATGPVTAVQ 258
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL---IMDII 749
V +++G+V E++ +L E M+ +E + R L D G DP+V++ L L I +
Sbjct: 259 VRDMLGLVDRERVYDLFEAVMAGRISEALDVLRMLYDGGADPVVVIQDLMELTHAITRMK 318
Query: 750 AGTYTIGGRSLTEAELER 767
A G L EAE +R
Sbjct: 319 AAPKASGANDLGEAERDR 336
>gi|197116612|ref|YP_002137039.1| DNA polymerase III subunits gamma/tau [Geobacter bemidjiensis Bem]
gi|197085972|gb|ACH37243.1| DNA polymerase III, gamma and tau subunits [Geobacter bemidjiensis
Bem]
Length = 582
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 160/263 (60%), Gaps = 3/263 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ V Q+L N I GR+A +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PC C C + G S + E+DG + G+D +R + ++ LPS S R+K+F
Sbjct: 66 SGLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+RLR I +E + V +AL ++A DGS+RD+ + LDQ L+ G ++ + V L+GV
Sbjct: 184 VSRLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGV 243
Query: 700 VSEEKLLELLELAMSSDTAETVK 722
V +++ +S + E ++
Sbjct: 244 VDRRLIMDGCRAVLSKEVREALQ 266
>gi|227513703|ref|ZP_03943752.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227522507|ref|ZP_03952556.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
gi|227083022|gb|EEI18334.1| DNA polymerase III subunit gamma/tau [Lactobacillus buchneri ATCC
11577]
gi|227090329|gb|EEI25641.1| DNA polymerase III subunit gamma/tau [Lactobacillus hilgardii ATCC
8290]
Length = 630
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 5/320 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FDE++GQ+I+ Q+L N I +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 46 QALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVN 105
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + +E+D + G++ +R I + A +K
Sbjct: 106 CHYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKAD--YK 163
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SR QK+ F +I+
Sbjct: 164 VYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPE 223
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI+ R+ I ++N+ + AL LIA A+G +RDA ++LDQ +S ++T ++
Sbjct: 224 DILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDKVTYENALQVT 283
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V+ E L +E + DT + ++++D+G D + L S DI+ Y
Sbjct: 284 GSVTNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQDIL--LYQQDP 341
Query: 758 RSLTEAELERLKHALKLLSE 777
+ + + EL + K LS+
Sbjct: 342 QIVEQLELGMVDDKFKALSD 361
>gi|406586251|ref|ZP_11061184.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD1S]
gi|419814070|ref|ZP_14338874.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD2S]
gi|404472299|gb|EKA16730.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD2S]
gi|404474200|gb|EKA18518.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD1S]
Length = 552
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|189485278|ref|YP_001956219.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287237|dbj|BAG13758.1| DNA polymerase III subunit gamma/tau [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 531
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 167/276 (60%), Gaps = 3/276 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P FDE++GQ + Q+L N+IS RIA YLF GPRG GKT+ A+I + ALNC
Sbjct: 6 LARKFRPQNFDEVVGQEHISQTLKNSISEKRIAHAYLFSGPRGCGKTTMARILAKALNCK 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
KPCG C C + S + +E+DG + G+D +R + +++ +AS ++K++
Sbjct: 66 NGPTIKPCGVCENCVEISKSSSVDVLEIDGASNNGIDDIRVLRENVK--FSTASSKYKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H + ++ + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F I ++
Sbjct: 124 IIDEAHQITAQAFNALLKTLEEPPAHVIFIMATTEQHKIPITILSRCQRYRFKLISGAEM 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V ++ I EE ++ +AL+++ + GS+RDA ++LDQ +S RIT + L+G+
Sbjct: 184 VCAIKSIGQEEGFEIDDEALNIVTSASGGSMRDALSLLDQAVSSNTGRITGDYMRGLLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPM 735
+ ++ ++ + + D +K +E+ + G + +
Sbjct: 244 LPKDIIVSVTDNIAKGDIHAILKIVKEIYEQGYNIL 279
>gi|421568016|ref|ZP_16013747.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
NM3001]
gi|402342961|gb|EJU78117.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
NM3001]
Length = 709
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 112/360 (31%), Positives = 192/360 (53%), Gaps = 31/360 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTSQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIM------- 746
V ++ L ELL ++ D A + +A+E+ D+ + + ++ Q +LI
Sbjct: 244 VDKQYLYELLTGIINQDGAALLSKAQEMAACAVGFDNALGELAILLQHLALIQAVPNALA 303
Query: 747 ------DIIAG-TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
DI+ TIGG E+++ ++ ++ L L+++ F TLL++
Sbjct: 304 HDDPDSDILHRLAQTIGG--------EQIQLYYQIAVHGKRDLSLATDEYAGFMMTLLRM 355
>gi|345016500|ref|YP_004818853.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344031843|gb|AEM77569.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 544
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 120/362 (33%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
VL +SL +KY+P F E++GQ +V++L N I +I YLF G RGTGKTS AKIF
Sbjct: 22 VLNMYQSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNKIGHAYLFTGTRGTGKTSVAKIF 81
Query: 514 SAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+ A+NC+ + +PC C C + + + +E+D + ++ VR + + + PS
Sbjct: 82 AKAVNCLKNTEGEPCNSCEICQAINNNTTMDVLEIDAASNNSVNDVRELRESVIYA-PSQ 140
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ ++KV++IDE H+L + + A LK LEEPP V+FI TT+ D +P +I SRCQ++ F
Sbjct: 141 A-KYKVYIIDEVHMLSTGAFNALLKTLEEPPPHVIFILATTEPDKLPDTILSRCQRFDFK 199
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
+I I L +I + + +E L IAL +GS+RDA ++L+Q + + IT
Sbjct: 200 RIPTRLIAQNLDRICNDSGIKIEEKGLKTIALYGNGSMRDAISLLEQCASYKEGLITYED 259
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V E++GV ++E L LL+ + D A ++K+ +++ G+D + L ++ D++
Sbjct: 260 VCEMLGVANDEMLFSLLDYMNAKDVAASLKQLDKILSYGIDVGNFLKSLTYILRDMV--L 317
Query: 753 YTIGGRSLTE---AELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
Y GG L E +++E +K +AL+ + +K++R + T T+L
Sbjct: 318 YKTGGEELKEILYSDVETVKERVQNFGTAFLTNALEKFTNLQKEVRYAISPLTLLEVTIL 377
Query: 798 QL 799
+L
Sbjct: 378 RL 379
>gi|419818324|ref|ZP_14342383.1| DNA polymerase III subunits gamma and tau, partial [Streptococcus
sp. GMD4S]
gi|404463436|gb|EKA09077.1| DNA polymerase III subunits gamma and tau, partial [Streptococcus
sp. GMD4S]
Length = 524
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|227894598|ref|ZP_04012403.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
gi|227863589|gb|EEJ71010.1| DNA polymerase III (DNA directed ) gamma-tau [Lactobacillus
ultunensis DSM 16047]
Length = 601
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 187/342 (54%), Gaps = 14/342 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNKCTNCIAADHGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E A+ +IA ADG +RDA ++LDQ LS + + ++
Sbjct: 182 DLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYKDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI---MDIIAGTYT 754
G + E + +L ++ D +K A+ +D G ++ +L + + ++ T
Sbjct: 242 GFAARENIEHILLSLLNQDAGTALKLAQAELDKGASSKNILDELIDMATKSLMLVKANST 301
Query: 755 IGGRSLTEAELERLK--------HALKLLSEAEKQLRLSSER 788
G L++ +E++K H + L + A LR ++++
Sbjct: 302 DQGMFLSKDFIEKIKDVPTSTYYHLITLANTALNDLRYTNQQ 343
>gi|451822852|ref|YP_007459126.1| DNA polymerase III subunit gamma/tau [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451775652|gb|AGF46693.1| DNA polymerase III subunit gamma/tau [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 549
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 175/290 (60%), Gaps = 3/290 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L++K++P FF++++GQ+ VV++LVN ++ R+ +LF GPRG GKTS A+I + +LNC
Sbjct: 5 ALARKWRPRFFEDVMGQDHVVKALVNALNSKRLHHAWLFSGPRGVGKTSIARILAKSLNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + PCG C C G + +++E+D + +G+D + +L+ A S RFKV
Sbjct: 65 INGITSNPCGKCDSCIGIDVGGTLDYLELDAASNRGVDEMSILLEQ--ANYTPVSGRFKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + + LK LEEPP+ V FIF TTD+ +P ++ SRC + I
Sbjct: 123 FLIDEVHMLTNHAFNSMLKTLEEPPEHVKFIFATTDLHKIPITVLSRCLCFNLRNISTSS 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+++L KI E + E ALD+I+ A+GS+RDA ++ DQ +S IT + ++G
Sbjct: 183 IISQLVKILESEKVIFETSALDIISRLANGSIRDALSLSDQAISYGNNSITEVSLRLMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+V K+ LL M+ D +K A ++++SG +S LA L+ ++
Sbjct: 243 MVDVIKVENLLRSIMNDDANSIIKIADDIINSGFSYEEFLSDLAVLLSEV 292
>gi|228988775|ref|ZP_04148851.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228770955|gb|EEM19445.1| DNA polymerase III subunit gamma/tau [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 548
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 205/360 (56%), Gaps = 19/360 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+P F ELIGQN + Q++ N + + + Y+F GPRGTGKT+ AK+ + +LN
Sbjct: 3 QALYRKYRPTNFIELIGQNHIKQTIQNALKLAKFSHAYMFTGPRGTGKTTIAKLIATSLN 62
Query: 519 CV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C ++ +PC C +C + +E+D + G++++R I + ++ + ++
Sbjct: 63 CENLNNEGEPCNECSQCKAIRGNSHADVLEIDAASNNGVEQIREIREQVAYA--PGTGKY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP+ V+FI TTD+ +P +I SRCQ++ F +I
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTDVHKIPATIISRCQRFDFRRIGP 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNE 695
DI+ RLR ++ +E + +E +AL L+ + A G +RDA +++DQ + IT V+E
Sbjct: 181 RDIIERLRHVAIKEEVKIEEEALQLLGMLAQGGMRDALSLMDQTIAFATNETITKDDVSE 240
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD-IIAGTYT 754
+VG +S EK+ + + +T E + +++ +G +P+ L+ L + D +I+ +
Sbjct: 241 VVGRISIEKIEACIGDLLKGNTIEILNLINQVILNGKEPIYLLEDLIGYLRDLVISKAFK 300
Query: 755 IGGRSLT-------------EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801
+ ++T E E+ +++ ++ L+E + +++ S+ L+QL +
Sbjct: 301 VQEDNITTAILNNKFYELLEEGEIYKMQMMIRKLTEVKNEMKFSNNAQVSLEVGLIQLAT 360
>gi|217421704|ref|ZP_03453208.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 576]
gi|217395446|gb|EEC35464.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 576]
Length = 712
Score = 197 bits (500), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LA L+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLAGLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|193216548|ref|YP_001999790.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis
158L3-1]
gi|193001871|gb|ACF07086.1| DNA polymerase III subunits gamma and tau [Mycoplasma arthritidis
158L3-1]
Length = 647
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 184/301 (61%), Gaps = 15/301 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++Y+P FDE+ GQ ++++L N I +I+ YLF GP GTGKTS AKIF+ LNC
Sbjct: 7 ALYRQYRPNKFDEVKGQENIIRTLTNIIKMQKISHAYLFCGPHGTGKTSVAKIFANTLNC 66
Query: 520 V-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAGLPSASP 575
++D +PC C E D ++ + +E+D + G+D +R + +KHL P+ S
Sbjct: 67 SHSSDLLEPCQECIENID----RNLDIIEIDAASNTGIDDIRELREKIKHL----PTHS- 117
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++K+++IDE H+L + A LK LEEPP+ +FI TTD +P +I SR Q++ F +I
Sbjct: 118 KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHAIFILATTDPQKIPLTILSRVQRFNFKRI 177
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLV 693
+ IV L + +E+++ E +AL LIA A+GS RDA ++ DQ+S+ +IT V
Sbjct: 178 DENVIVMHLMHVYDQEHIDYEKNALKLIASLANGSFRDALSLADQVSIFATNSKITLVEV 237
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY 753
L G+++ + +++L+ L S + E +++ +L+D+G D L++Q+ +++ D + +
Sbjct: 238 ESLFGLINLKNVIDLINLMASHNIKEVLQKLGKLIDAGADIERLVTQMINVLKDFLVYSR 297
Query: 754 T 754
T
Sbjct: 298 T 298
>gi|218961502|ref|YP_001741277.1| DNA polymerase III, gamma/tau subunits (fragment), partial
[Candidatus Cloacamonas acidaminovorans]
gi|167730159|emb|CAO81071.1| DNA polymerase III, gamma/tau subunits (fragment) [Candidatus
Cloacamonas acidaminovorans str. Evry]
Length = 533
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 106/306 (34%), Positives = 171/306 (55%), Gaps = 3/306 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F E+ Q + + L + I+ RIA YLF GPRG GKTS A+I + +LNCV
Sbjct: 6 LARKYRPQNFKEVYAQEHITEILQSAIATNRIAHAYLFTGPRGVGKTSLARILAKSLNCV 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T PC C C + +G S + +E+DG + +D +R + + L P++S +K++
Sbjct: 66 NGPTTTPCNACSNCLEITAGTSPDVIEIDGASNTSVDDIRELQRELLY--PASSSNYKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP V+FIF TT+ V +I SRCQ+Y F +I I
Sbjct: 124 IIDEVHMLSKNAFNALLKTLEEPPDNVIFIFATTEPQKVLPTIISRCQRYDFKRIPIASI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V RL++IS E + ++ ++L LIA ADG +RDA +++DQ +S IT V ++ G+
Sbjct: 184 VQRLQEISVLEGIKIDSESLYLIARKADGGMRDALSLMDQAISYCLNNITIDKVRQIFGM 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + + L L + DT + + + G+D ++ + + +I + +
Sbjct: 244 IPNQVYQKFLTLIYNKDTQGLINELHLIFEQGIDLQEFIANMQEFVRILILRKLQVQIKD 303
Query: 760 LTEAEL 765
+ EL
Sbjct: 304 INPDEL 309
>gi|226197211|ref|ZP_03792788.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei Pakistan 9]
gi|225930590|gb|EEH26600.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei Pakistan 9]
Length = 531
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|39995205|ref|NP_951156.1| DNA polymerase III subunits gamma and tau [Geobacter sulfurreducens
PCA]
gi|409910653|ref|YP_006889118.1| DNA polymerase III subunits gamma and tau [Geobacter sulfurreducens
KN400]
gi|39981967|gb|AAR33429.1| DNA polymerase III, gamma and tau subunits [Geobacter
sulfurreducens PCA]
gi|298504210|gb|ADI82933.1| DNA polymerase III, gamma and tau subunits [Geobacter
sulfurreducens KN400]
Length = 579
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/261 (39%), Positives = 157/261 (60%), Gaps = 9/261 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L GQ V ++L N I GRIA +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAGLPSASPRF 577
+PC C C + +G S + +E+DG + G+D +R + +K+L + L R+
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRL-----RY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + + A LK LEEPP V FIF TT+ +P +I SRCQ++ F +I
Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
+VARLR I E +++ ++L ++A DGS+RD+ ++LDQ L+ G+ + V L
Sbjct: 181 AKVVARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSL 240
Query: 697 VGVVSEEKLLELLELAMSSDT 717
+GVV LLE + DT
Sbjct: 241 LGVVDRRLLLEASAAVLGRDT 261
>gi|295087965|emb|CBK69488.1| DNA polymerase III, tau subunit [Bacteroides xylanisolvens XB1A]
Length = 621
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLMQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|294012157|ref|YP_003545617.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
UT26S]
gi|292675487|dbj|BAI97005.1| DNA polymerase III gamma and tau subunit [Sphingobium japonicum
UT26S]
Length = 536
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 176/314 (56%), Gaps = 16/314 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F ELIGQ+ +VQ+L N I RGR+A +L G RG GKTSTA++ + ALN
Sbjct: 9 RVLARKYRPRNFSELIGQDAMVQTLGNAIRRGRLAHAFLMTGVRGVGKTSTARLIAKALN 68
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
CV D PCG C C G+ + +E+D + G+D +R I+ AG +
Sbjct: 69 CVGPDGQGGPTIDPCGLCEPCMAIGEGRHIDVLEMDAASHTGVDDIRSIID--IAGKGAY 126
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
S R+K+++IDE H+L + A LK LEEPP+ V F+ TT+++ VP ++ SRCQ++
Sbjct: 127 SARYKIYIIDEVHMLSRNAFNALLKTLEEPPEHVKFVLATTEVNKVPVTVLSRCQRFDLR 186
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL---SLLGK---R 687
+I + A + E++ EPDAL LIA A+GS RD ++LDQ + +G+
Sbjct: 187 RIPAELLAAHFAHVVEAESVAAEPDALALIAQAAEGSARDGLSILDQAIAHAEMGEGAPL 246
Query: 688 ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
+T++ V +++G+ LL L + DT + R+ GV+P+ LM L L+
Sbjct: 247 VTAAQVRDMLGLSDRGATRRLLGLLLEGDTGVLLGAVRDQYALGVEPLSLMRGLLELVHA 306
Query: 748 IIAGTYTIGGRSLT 761
+ T GR +
Sbjct: 307 V---TLVKAGRDIA 317
>gi|347550041|ref|YP_004856369.1| putative DNA polymerase III subunits gamma and tau [Listeria
ivanovii subsp. ivanovii PAM 55]
gi|346983112|emb|CBW87160.1| Putative DNA polymerase III (gamma and tau subunits) [Listeria
ivanovii subsp. ivanovii PAM 55]
Length = 577
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 200/379 (52%), Gaps = 25/379 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N I + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++ +R I + + P+ + ++K
Sbjct: 64 CEHGHDGEPCNECDICKGTTDGSIPDVLEIDAASNNGVEEIRDIREKVKYA-PTVA-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELV 697
DI+ RL I EE + AL ++A A+G +RDA ++LDQ+ G + +T E+
Sbjct: 182 DIIGRLEFILKEEKTPYDEKALMIVARAAEGGMRDALSLLDQVISYGSEEVTVDDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII-----AGT 752
G +++ L +L+ A D AE + L+ G DP+ L+ L D++
Sbjct: 242 GSIAQGLLTKLVSAAFDGDAAEAISTLTALLAEGKDPVRLVEDLLVFFRDVLLYQKAPNL 301
Query: 753 YTIGGRSLTEAELE---------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
R+L + E ++ +K+L+ A++Q+R S+ + L+Q
Sbjct: 302 EETLERALIDDEFVSLAKRANSFKIYEFVKILNTAQQQMRFSNHPGIYVEVALVQ----- 356
Query: 804 SPDLTQSGSSRRQSSRTTE 822
LTQ+G + +S+ E
Sbjct: 357 ---LTQAGQTVGESAAPVE 372
>gi|319406562|emb|CBI80204.1| DNA polymerase III, subunits gamma and tau [Bartonella sp. 1-1C]
Length = 604
Score = 197 bits (500), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/317 (35%), Positives = 181/317 (57%), Gaps = 10/317 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N + GRIA ++ G RG GKT+TA+I S ALN
Sbjct: 8 RVLARKYRPQNFSDLIGQEAMVRTLNNAFTTGRIAQAWMLTGIRGVGKTTTARILSRALN 67
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 68 YKTKDIDQPTTLFDTLGEHCAQIIEGRHIDVVEMDAASHTGIDDIREIIEQIRYRPVSA- 126
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 127 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITILSRCQRFNLQR 185
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
++ +VA LRKIS E + + AL +IA A+GS+RDA ++ DQ ++ ++ ++ V
Sbjct: 186 VETTALVAHLRKISQLEKVEAQDQALFMIARAAEGSVRDALSIFDQAIAYSNGKVDTTAV 245
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDIIA 750
+ ++G+ + +++L E M + + R + G DP V++++LA+ LI +
Sbjct: 246 SLMLGLTDQSHIIDLFESLMKGNIIHALHELRNQYNRGADPFVILTELANFNHLITRLRL 305
Query: 751 GTYTIGGRSLTEAELER 767
I SLTE E R
Sbjct: 306 TPEIIENSSLTEEERSR 322
>gi|167738244|ref|ZP_02411018.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 14]
Length = 380
Score = 197 bits (500), Expect = 5e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|167581686|ref|ZP_02374560.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis TXDOH]
Length = 384
Score = 197 bits (500), Expect = 5e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|407980447|ref|ZP_11161234.1| DNA polymerase III subunits gamma and tau [Bacillus sp. HYC-10]
gi|407412804|gb|EKF34565.1| DNA polymerase III subunits gamma and tau [Bacillus sp. HYC-10]
Length = 570
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 169/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + ++PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEKSPVSEPCNECDACRGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R+ KI E+LNV+ +L++IA ADG +RDA ++LDQ +S G+++T +
Sbjct: 182 DIVGRMEKIVDAESLNVQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ + +L E + A + EL+ G D L+ + D++
Sbjct: 242 GAVSQHFISQLAEAIFEQNIAIALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|167823844|ref|ZP_02455315.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 9]
Length = 381
Score = 196 bits (499), Expect = 5e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|167815434|ref|ZP_02447114.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 91]
Length = 378
Score = 196 bits (499), Expect = 5e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|167719247|ref|ZP_02402483.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei DM98]
Length = 376
Score = 196 bits (499), Expect = 5e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|336407150|ref|ZP_08587784.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|423216289|ref|ZP_17202814.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
gi|335948251|gb|EGN09968.1| hypothetical protein HMPREF0127_05097 [Bacteroides sp. 1_1_30]
gi|392691140|gb|EIY84391.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens CL03T12C04]
Length = 621
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|298482983|ref|ZP_07001165.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
gi|298270955|gb|EFI12534.1| DNA polymerase III, gamma and tau subunits [Bacteroides sp. D22]
Length = 621
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|171779618|ref|ZP_02920574.1| hypothetical protein STRINF_01455 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171281720|gb|EDT47154.1| DNA polymerase III, subunit gamma and tau [Streptococcus
infantarius subsp. infantarius ATCC BAA-102]
Length = 562
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 164/275 (59%), Gaps = 4/275 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ FDE++GQ ++ +L +S G+I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFDEMVGQTVISTTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C+D +G + +E+D + G+D +R I + S PS + +K
Sbjct: 63 CPHQVNGEPCNHCDICHDITNGSLEDVIEIDAASNNGVDEIREI-RDKSTYAPSRAT-YK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLA 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLG-KRITSSLVNEL 696
I L I +E + E DAL LIA A+G +RDA ++LDQ LSL ++ S+ E+
Sbjct: 181 AIRDHLADILGKEGITYEEDALTLIARCAEGGMRDALSILDQALSLTSDNHVSLSIAEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
G +S L + + +++ T++ + + DSG
Sbjct: 241 TGSISMTALDDFVANVLANQTSQALTNLETIFDSG 275
>gi|294778363|ref|ZP_06743786.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
PC510]
gi|294447625|gb|EFG16202.1| DNA polymerase III, subunit gamma and tau [Bacteroides vulgatus
PC510]
Length = 603
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 195/376 (51%), Gaps = 18/376 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPDLTQSGSSR 814
+ PD + R
Sbjct: 359 CAQLTLPDADDASGGR 374
>gi|76789059|ref|YP_328145.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
A/HAR-13]
gi|237802758|ref|YP_002887952.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
B/Jali20/OT]
gi|237804680|ref|YP_002888834.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
B/TZ1A828/OT]
gi|376282339|ref|YP_005156165.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A2497]
gi|385270017|ref|YP_005813177.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A2497]
gi|76167589|gb|AAX50597.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
A/HAR-13]
gi|231272980|emb|CAX09892.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
B/TZ1A828/OT]
gi|231273992|emb|CAX10785.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis
B/Jali20/OT]
gi|347975157|gb|AEP35178.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A2497]
gi|371908369|emb|CAX08998.1| DNA polymerase III subunit gamma/tau [Chlamydia trachomatis A2497]
gi|438690259|emb|CCP49516.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
A/7249]
gi|438691343|emb|CCP48617.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
A/5291]
gi|438692716|emb|CCP47718.1| DNA polymerase III subunits gamma and tau [Chlamydia trachomatis
A/363]
Length = 466
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 120/363 (33%), Positives = 196/363 (53%), Gaps = 6/363 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
S++Y+P F E++GQ+IVV L N++ R A Y+F G RGTGKT+ A++F+ ALNC
Sbjct: 8 SRRYRPNNFSEILGQDIVVSILKNSLRLNRAAHAYIFSGIRGTGKTTLARVFAKALNCQN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T +PC C C + G S + +E+DG + +G++ +R I +PS S R+K++
Sbjct: 68 PTQDQEPCNQCAICKEISLGTSMDVIEIDGASHRGIEDIRQI-NETVLFVPSKS-RYKIY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + + LK LEEPP V F TT+I +P +I SRCQK L +I + I
Sbjct: 126 IIDEVHMLTKEAFNSLLKTLEEPPVHVKFFLATTEIAKIPNTISSRCQKMLLKRISEETI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ +L I+ +E +AL IA A GSLRDAE++ D + L + + + +G+
Sbjct: 186 IDKLATIAKQEGTETSREALLPIAKAAQGSLRDAESLYDYVVGLFPESLDPDSTAKALGI 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+SE+ L +L E + + + + + M GV P + + L + Y+ S
Sbjct: 246 LSEDSLYQLAEAITTQNYEQALTPVSDAMQMGVAPAHFLQDVTLLFRSFLLKQYSKQLHS 305
Query: 760 L-TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS-PDLTQSGSSRRQS 817
+ T+ E L L L E+ + + L+ T+ +++L ++S P +Q S RQ
Sbjct: 306 VATKYSSEILLEILDFLGESARHINLALFEKTFLETVIIRLLRIYSRPTFSQLVSQIRQP 365
Query: 818 SRT 820
+ T
Sbjct: 366 APT 368
>gi|389571541|ref|ZP_10161632.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
gi|388428780|gb|EIL86574.1| DNA polymerase III subunit gamma/tau [Bacillus sp. M 2-6]
Length = 570
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQVFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + ++PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEKSPVSEPCNECDACRGITTGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPAHCIFILATTEPHKIPLTIISRCQRFDFKRITTK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R+ KI E+LN++ +L++IA ADG +RDA ++LDQ +S G+++T +
Sbjct: 182 DIVGRMEKIVDAESLNIQEGSLEIIASAADGGMRDALSLLDQAISFSGEQLTIDDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ + +L E + A + EL+ G D L+ + D++
Sbjct: 242 GAVSQHFISQLAEAIFEQNIAIALDTLNELLQQGKDAAKLIEDMIFYFRDML 293
>gi|374301220|ref|YP_005052859.1| DNA polymerase III subunits gamma and tau [Desulfovibrio africanus
str. Walvis Bay]
gi|332554156|gb|EGJ51200.1| DNA polymerase III, subunits gamma and tau [Desulfovibrio africanus
str. Walvis Bay]
Length = 605
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 160/284 (56%), Gaps = 3/284 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ KY+P F E+ GQ + L RIAP YLF G RG GKT+ A+I + A+NC
Sbjct: 6 LTAKYRPQCFAEVAGQEALKAVLSRAAKEDRIAPAYLFSGTRGVGKTTLARILAKAVNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PC CR C +G + + +E+D + +G+D R + + + G R+KVF
Sbjct: 66 HAPTAEPCNQCRHCRQITAGAAVDVVEIDAASNRGIDDARRLKEDI--GYAPLECRYKVF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP RV FI TT+ P +I SRCQ Y F ++ ++
Sbjct: 124 IIDEAHMLTREAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYAFKRLGQAEL 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
A L+ + +E ++ E A+ LIA GS+RD+ ++L Q L+L G+++ + V L+G+
Sbjct: 184 EAHLKVVLGKEGVDCEDAAVSLIARRGAGSVRDSMSLLGQALALGGRQLVAQEVRSLLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
++ L ++E + D + R+++D G+D + +L+S
Sbjct: 244 AGQDVFLAVMEAIHTGDCIAAGEVIRQVLDQGLDLGFFLRELSS 287
>gi|225018615|ref|ZP_03707807.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum
DSM 5476]
gi|224948609|gb|EEG29818.1| hypothetical protein CLOSTMETH_02565 [Clostridium methylpentosum
DSM 5476]
Length = 536
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 192/369 (52%), Gaps = 20/369 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F++++ Q + +L+N I G IA YLF G RGTGKT+ +KI + A+NC
Sbjct: 4 ALYRKWRPKSFEDVLSQPHITTTLINEIKTGHIAHAYLFTGSRGTGKTTCSKILAKAVNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C G + +E+D + G+D +R + A S +++V
Sbjct: 64 LHPVDGEPCHECECCRGIEDGSILDVVEIDAASNNGVDNIRELRDE--ANFTPVSCKYRV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK +EEPP V+FI TT++ VP +I SRCQ++ F +IK D
Sbjct: 122 YIIDEAHMLSTGAFNALLKIMEEPPPHVIFILATTEVHKVPATILSRCQRFDFRRIKAED 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
IVA+L KI+ E ++ +A +LIA ADG +RDA ++LDQ IT +V+ G+
Sbjct: 182 IVAQLMKITESEEFSLTQEAAELIARLADGGMRDALSLLDQCVAFSSDITVEVVSSAAGI 241
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
E L E + M D A+ + EL D L +L + +++ T +
Sbjct: 242 ADREYLFEFHQAVMGRDPAKALALIDELYAKSKDLERLCEELINFYRNLMIIQTTARYKE 301
Query: 760 LTEA---ELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
+ A EL RL+ H L +L ++ ++ + F +++L S
Sbjct: 302 IVLAVPEELARLEQLAGQLKLSQVIHCLTVLQDSIERFNKVGNKRLEFEICMIKLC---S 358
Query: 805 PDLTQSGSS 813
P+L QS S
Sbjct: 359 PNLDQSMDS 367
>gi|333993512|ref|YP_004526125.1| DNA polymerase III subunits gamma and tau [Treponema azotonutricium
ZAS-9]
gi|333734902|gb|AEF80851.1| DNA polymerase III, subunits gamma and tau [Treponema
azotonutricium ZAS-9]
Length = 470
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 179/334 (53%), Gaps = 16/334 (4%)
Query: 466 KPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQT 525
+P FDEL GQ V +L N++ G IA YLF GPRG GKTS A+I + +L C
Sbjct: 11 RPKTFDELAGQEFVAATLKNSLETGHIAHAYLFSGPRGCGKTSAARILARSLRCERGPTP 70
Query: 526 KPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDEC 585
PCG C +C + G S + +E+DG + G++ VR I + + P S RFK+++IDE
Sbjct: 71 TPCGRCPQCEEIARGSSMDVIEIDGASNTGVNDVRQIKEEVL--FPPTSGRFKIYIIDEV 128
Query: 586 HLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLR 645
H+L + + A LK +EEPP V+FIF TT++ VP +I+SRCQ++ F I I + L
Sbjct: 129 HMLSNNAFNALLKTIEEPPPSVIFIFATTELQKVPATIKSRCQQFNFRLIPIETIKSLLA 188
Query: 646 KISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVVSEEK 704
+ E + E +AL IA + GSLRDA T+ DQ +S I S ++ E +G+V ++
Sbjct: 189 QACREMEIEAEDEALFWIARESTGSLRDAYTLFDQVVSFSDGNIQSDIIREKLGLVGLDR 248
Query: 705 LLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTY-------- 753
L E + ++D A + + EL+ GV ++ LA + AG
Sbjct: 249 LNEFADACAANDVAGALAKIDELIGDGVAVEQFVTDLAGYYHSLYLLKAGVTRESLLGYP 308
Query: 754 --TIGGRSLTEAELERLKHALKLLSEAEKQLRLS 785
+ L + + ++L HA +LL + + +R S
Sbjct: 309 PERFSAKVLEKLDTQKLAHAGELLFDLHRDIRYS 342
>gi|161524619|ref|YP_001579631.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans
ATCC 17616]
gi|189350625|ref|YP_001946253.1| DNA polymerase III subunits gamma and tau [Burkholderia multivorans
ATCC 17616]
gi|160342048|gb|ABX15134.1| DNA polymerase III, subunits gamma and tau [Burkholderia
multivorans ATCC 17616]
gi|189334647|dbj|BAG43717.1| DNA polymerase III gamma and tau subunit [Burkholderia multivorans
ATCC 17616]
Length = 821
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|126442209|ref|YP_001059241.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 668]
gi|126221702|gb|ABN85208.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 668]
Length = 826
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|297183472|gb|ADI19603.1| DNA polymerase III, gamma/tau subunits [uncultured SAR11 cluster
bacterium HF0770_37D02]
Length = 563
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 204/346 (58%), Gaps = 25/346 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L+ KY+P F+ELIGQ+++VQ++ N+I ++ YL G RG GKT+TA++ + A+N
Sbjct: 7 KILALKYRPKNFEELIGQDMMVQTITNSIKLDKLPNAYLLTGIRGVGKTTTARLIAKAIN 66
Query: 519 C-VATDQTKPCG---YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
C + Q + C +C C + I+ + + +E+D ++ G+D VR +++ S+
Sbjct: 67 CKMDFFQGEKCNSNEHCH-CKEIINSRHLDVLEMDAASRTGIDDVRELIE--SSKYNPTH 123
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
++K+F+IDE H+L + + LK LEEPP + FIF TT++ VP +I SRCQ++ ++
Sbjct: 124 AKYKIFIIDEVHMLSKQAFNGLLKTLEEPPPHLKFIFATTEVKKVPVTIVSRCQRFDLHR 183
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRIT----- 689
+ ++ +L+KI EN N+ AL LIA ++GS+RD+ ++LD+ +L+ + IT
Sbjct: 184 VSIKVLLGQLKKILKIENGNISDAALKLIAKTSEGSVRDSLSLLDR-ALVSQHITEKEID 242
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ V +++G+ K+LELL+ + E++K+ RE+++ GV+P+ ++ +I I+
Sbjct: 243 ETFVRKMLGIADRSKILELLQFIFYGNLKESIKQLREMINEGVEPVNFLNDFLEMIYFIL 302
Query: 750 AGTYTIG----GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTW 791
IG S++E+E LK++ K +++S+ W
Sbjct: 303 QKK-NIGDFDSDLSISESE-------LKMIDSISKDVKISTLTIFW 340
>gi|283796874|ref|ZP_06346027.1| DNA polymerase III, gamma and tau subunit [Clostridium sp. M62/1]
gi|291075280|gb|EFE12644.1| DNA polymerase III, subunit gamma and tau [Clostridium sp. M62/1]
gi|295089888|emb|CBK75995.1| DNA polymerase III, subunits gamma and tau [Clostridium cf.
saccharolyticum K10]
Length = 555
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 189/357 (52%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P+ F ++ GQ+ +V++L N I+ GRI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPVSFGDVKGQDPIVKTLKNQITSGRIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C + G S N +E+D + G++ +R I + + P ++V
Sbjct: 65 EHPVDGSPCNECETCRHIMEGSSLNVVEIDAASNNGVENIREIREQVQ--YPPTEGTYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL--LGKRITSSLVNELV 697
I RLR+++ E++ VE AL +A ADGS+RDA ++LDQ + G+ +T V E++
Sbjct: 183 IADRLRELTEAEHIGVEERALRYVAKAADGSMRDALSLLDQCAAFHFGETLTYDNVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAE-------TVKRARELMDSGVDPMVLMSQL--------A 742
G V EL A+ T + + + REL D + + L A
Sbjct: 243 GAVDNSVFSELFRAAVEGRTRDCICRIEEIIIQGRELSQFVNDFVWYLRNLLIVQSADDA 302
Query: 743 SLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ A + A+ + L +++ SE Q+R +S++ ++L
Sbjct: 303 ENMLDMSAENIRLLKEEAALADADTLMRYIRIFSELSGQMRYASQKRVLLEIAFIKL 359
>gi|89069708|ref|ZP_01157044.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
gi|89044654|gb|EAR50765.1| DNA polymerase III subunits gamma and tau [Oceanicola granulosus
HTCC2516]
Length = 583
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 107/290 (36%), Positives = 171/290 (58%), Gaps = 8/290 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++KY+P F +L+GQ+ +V++L N + RIA ++ G RGTGKT+TA+I + +NCV
Sbjct: 10 LARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNCV 69
Query: 521 ATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
D T+PCG C C + G+ + ME+D ++ G+ +R I+ S +AS
Sbjct: 70 GADGQGGPTTEPCGRCEHCTAIMEGRHVDVMEMDAASRTGVGDIREIID--SVHYRAASA 127
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
R+K+++IDE H+L + + A LK LEEPP+ V FIF TT+I VP ++ SRCQ++ +I
Sbjct: 128 RYKIYIIDEVHMLSTSAFNALLKTLEEPPEHVKFIFATTEIRKVPVTVLSRCQRFDLRRI 187
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVN 694
+ ++A LR+I+ E + DAL LI A+GS RDA ++LDQ +S T+ V
Sbjct: 188 EPEVMIALLRRIADAEGAAIADDALALITRAAEGSARDATSLLDQAISHGAGETTAEQVR 247
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++L+L +L + D A + G DPM ++ LA +
Sbjct: 248 AMLGLADRSRVLDLFDLILKGDAAGALTELAGQYADGADPMAVLRDLAEI 297
>gi|374294621|ref|YP_005044812.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
gi|359824115|gb|AEV66888.1| DNA polymerase III, subunit gamma/tau [Clostridium clariflavum DSM
19732]
Length = 552
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 115/324 (35%), Positives = 187/324 (57%), Gaps = 6/324 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P+ F++++ Q VV++L N+I GRIA YLF G RGTGKT+ AKIFS A+NC
Sbjct: 5 ALYRKWRPMVFEDVVEQEHVVKTLKNSILAGRIAHAYLFCGTRGTGKTTMAKIFSRAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + PC C C ++G + +E+D + +D VR I + PS + R+KV
Sbjct: 65 LNSTDGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYA-PSKA-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVFI TT+ +P +I SRCQ++ F +I
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPSHVVFILATTEPHKLPATILSRCQRFDFRRIPVES 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV R+R I+ +++E + L LIA +DG+LRDA ++LDQ +SL K +T V +VG
Sbjct: 183 IVKRIRYIAENSGVSIEEEGLRLIARMSDGALRDAISILDQCISLGNKHLTYEDVLSIVG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+V+ + ++++ + + ++ L+ G + +S L +++ + +
Sbjct: 243 IVNNTFVADVVDAINAKEVDRVLQFINVLVMDGKNITQFVSDLILYYRNLLICSTSKNPE 302
Query: 759 SLTEAE---LERLKHALKLLSEAE 779
+ EA +ER+K K LS E
Sbjct: 303 EIVEASKDMIERMKEQCKSLSHLE 326
>gi|153941061|ref|YP_001389393.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum F
str. Langeland]
gi|384460484|ref|YP_005673079.1| DNA polymerase III subunits gamma/tau [Clostridium botulinum F str.
230613]
gi|152936957|gb|ABS42455.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. Langeland]
gi|295317501|gb|ADF97878.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum F
str. 230613]
Length = 541
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 202/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITDSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|227510687|ref|ZP_03940736.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227189808|gb|EEI69875.1| DNA polymerase III subunit gamma/tau [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 630
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 179/320 (55%), Gaps = 5/320 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FDE++GQ+I+ Q+L N I +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 46 QALYRVWRPQRFDEIVGQSIITQTLKNAILTKQISHAYLFTGPRGTGKTSAAKIFAKAVN 105
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + +E+D + G++ +R I + A +K
Sbjct: 106 CHYLEDGEPCNKCETCRAINEGSLSDVIEIDAASNNGVEEIRDIRDKVKYAPTKAD--YK 163
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SR QK+ F +I+
Sbjct: 164 VYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPHKIPATIISRTQKFDFKRIRPE 223
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI+ R+ I ++N+ + AL LIA A+G +RDA ++LDQ +S ++T ++
Sbjct: 224 DILERMAYILKQKNIEYDDKALKLIAKAAEGGMRDALSILDQAMSYGDDKVTYENALQVT 283
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V+ E L +E + DT + ++++D+G D + L S DI+ Y
Sbjct: 284 GSVTNELLTTYVEQVIKKDTKNALITVQKVLDNGKDASRFVEDLTSYCQDIL--LYQQDP 341
Query: 758 RSLTEAELERLKHALKLLSE 777
+ + + EL + K LS+
Sbjct: 342 QIVEQLELGMVDDKFKALSD 361
>gi|53723573|ref|YP_103021.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei ATCC
23344]
gi|121598928|ref|YP_993170.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei
SAVP1]
gi|124386554|ref|YP_001026054.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC
10229]
gi|126448303|ref|YP_001080677.1| DNA polymerase III subunits gamma and tau [Burkholderia mallei NCTC
10247]
gi|254178396|ref|ZP_04885051.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
ATCC 10399]
gi|52426996|gb|AAU47589.1| DNA polymerase III, subunit gamma, putative [Burkholderia mallei
ATCC 23344]
gi|121227738|gb|ABM50256.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei
SAVP1]
gi|124294574|gb|ABN03843.1| putative DNA polymerase III, subunit gamma [Burkholderia mallei
NCTC 10229]
gi|126241173|gb|ABO04266.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
NCTC 10247]
gi|160699435|gb|EDP89405.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei
ATCC 10399]
Length = 825
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|262409631|ref|ZP_06086171.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|294647112|ref|ZP_06724716.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294807901|ref|ZP_06766682.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
gi|345509527|ref|ZP_08789123.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|229447047|gb|EEO52838.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. D1]
gi|262352484|gb|EEZ01584.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 2_1_22]
gi|292637529|gb|EFF55943.1| DNA polymerase III, subunit gamma and tau [Bacteroides ovatus SD CC
2a]
gi|294444899|gb|EFG13585.1| DNA polymerase III, subunit gamma and tau [Bacteroides
xylanisolvens SD CC 1b]
Length = 621
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 114/364 (31%), Positives = 197/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTADGEACNQCESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++E + EP+AL++IA+ ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVNHLSYVASKEGITAEPEALNVIAMKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGT 752
V + + V+ E L + + + ++ + ++++ G D ++ L+S D++ G
Sbjct: 239 VIDNLNVLDYEYYFRLTDCFLENKVSDALLLFNDILNKGFDGSHFITGLSSHFRDLLVGK 298
Query: 753 -----------YTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+I R +A+ L L A+KL +E + R+S + TL+Q
Sbjct: 299 DPVTLPLLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNECDLNYRISKNKRLLVELTLIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|331270686|ref|YP_004397178.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
BKT015925]
gi|329127236|gb|AEB77181.1| DNA polymerase III, subunits gamma and tau [Clostridium botulinum
BKT015925]
Length = 541
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 196/356 (55%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+E++GQ + +L N + RIA YLF G RGTGKTSTAKIFS A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G + + E+D + +D +R +++ + P ++KV
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVK--YPPREGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L AFLK LEEPP+ VVFI TTD +P +I SRCQ++ F +IK D
Sbjct: 123 YIMDEAHMLTQGAVNAFLKTLEEPPENVVFILATTDPQKLPITILSRCQRFDFKRIKSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I+ RL KI+ E+ + + +L LIA +DG++RDA ++LDQ +S+ ++ V ++G
Sbjct: 183 ILQRLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYEQVINMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQLAS 743
+V+ + LL+L + D +++ +++ G D MV +SQ
Sbjct: 243 LVTNDNLLKLTNAIIDKDVENSIRIIDDVVYGGKDINLFIKDMIHHMRNLMMVKVSQNPE 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ T+ +E + +++L E E+Q + S + + ++++
Sbjct: 303 DVLDMSEENINFLKEQSTKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELAIIKM 358
>gi|197302301|ref|ZP_03167360.1| hypothetical protein RUMLAC_01028 [Ruminococcus lactaris ATCC
29176]
gi|197298732|gb|EDY33273.1| DNA polymerase III, subunit gamma and tau [Ruminococcus lactaris
ATCC 29176]
Length = 522
Score = 196 bits (499), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 119/357 (33%), Positives = 194/357 (54%), Gaps = 19/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F+++ GQ +V +L N I RI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKFRPAEFEDVKGQEHIVTTLQNQIKANRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C +G S N +E+D + G+D +R I + ++ P+ ++KV
Sbjct: 65 EHPVNGSPCGECAMCKSIAAGTSMNVIEIDAASNNGVDNIREIREEVTYR-PTEG-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP+ V+FI TT++ +P +I SRCQ Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEYVIFILATTEVHKIPITILSRCQHYDFKRISIET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I AR++++ E + VE AL IA ADGS+RDA ++LDQ LG+++T V E++
Sbjct: 183 ITARMQELMDTEQIEVEDKALRYIAKAADGSMRDALSLLDQCIAFYLGQKLTYDHVLEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQ----LASLIM----DII 749
G V + +LL + + A + EL+ G + L+ L +L++ D I
Sbjct: 243 GAVDTDVFSKLLRNVIGRNVAAVLDIVEELVMQGRELTQLVGDFTWYLRNLLLVKTSDNI 302
Query: 750 AGTYTIGGRSLTE-------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ ++ + EL+ L +++ SE Q++ ++++ L++L
Sbjct: 303 EDVLDVSTENMMQLKEESDMIELDMLLRYIRVFSELSGQMKYATQKRVLLEVALIKL 359
>gi|255530648|ref|YP_003091020.1| DNA polymerase III subunits gamma and tau [Pedobacter heparinus DSM
2366]
gi|255343632|gb|ACU02958.1| DNA polymerase III, subunits gamma and tau [Pedobacter heparinus
DSM 2366]
Length = 602
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 175/299 (58%), Gaps = 4/299 (1%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I ++A +LF GPRG GKT+ A+I +
Sbjct: 1 MENFIVSARKYRPATFETVVGQQHITGTLKNAIKNNQLAQAFLFCGPRGVGKTTCARILA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC + T + + CG C C F +G S NF E+D + +D +R +++ + +P
Sbjct: 61 KTINCTSLTAEQEACGTCESCVSFQTGHSFNFHELDAASNNSVDDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ ++K+++IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ + FN
Sbjct: 119 AGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSL 692
+I+ DI L KI+ EN+ VE D L +IA ADG LRDA +M DQ+ S K +T
Sbjct: 179 RIQVEDISGHLNKIAQRENIAVEADGLHIIAQKADGGLRDALSMFDQIVSYTNKNLTYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
V + + ++ + +L + ++D + T+ E++++G D ++ LAS + +++
Sbjct: 239 VIDNLNILDYDYYFKLTQHLTATDVSHTLILFDEILNNGFDGNNFINGLASHLRNLLVA 297
>gi|170760406|ref|YP_001785357.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A3
str. Loch Maree]
gi|169407395|gb|ACA55806.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A3
str. Loch Maree]
Length = 541
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|53719132|ref|YP_108118.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei K96243]
gi|418553127|ref|ZP_13117965.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 354e]
gi|52209546|emb|CAH35499.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei K96243]
gi|385372061|gb|EIF77193.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 354e]
Length = 825
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|221198096|ref|ZP_03571142.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M]
gi|221182028|gb|EEE14429.1| DNA polymerase III subunit tau [Burkholderia multivorans CGD2M]
Length = 818
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|237812565|ref|YP_002897016.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei MSHR346]
gi|237503016|gb|ACQ95334.1| DNA polymerase III subunit tau [Burkholderia pseudomallei MSHR346]
Length = 825
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|76808592|ref|YP_333768.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1710b]
gi|254259031|ref|ZP_04950085.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1710a]
gi|76578045|gb|ABA47520.1| DNA polymerase III subunit gamma [Burkholderia pseudomallei 1710b]
gi|254217720|gb|EET07104.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1710a]
Length = 822
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|295676458|ref|YP_003604982.1| DNA polymerase III subunits gamma and tau [Burkholderia sp.
CCGE1002]
gi|295436301|gb|ADG15471.1| DNA polymerase III, subunits gamma and tau [Burkholderia sp.
CCGE1002]
Length = 838
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EEN+ E AL L+A ADGS+RDA ++ DQ ++ +++ V ++G
Sbjct: 184 VSHLERILGEENVPHEAQALRLLARAADGSMRDALSLTDQAIAYSANQVSEDAVRGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY---TIG 756
+ + L+ LL+ D A + A E+ + + LASL+ I + ++
Sbjct: 244 LDQSYLIRLLDALAQGDGAAVLAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPSSVL 303
Query: 757 GRSLTEAELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
A+L R AL ++ + +L L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFADALSAEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRM 355
>gi|78187181|ref|YP_375224.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
gi|78167083|gb|ABB24181.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
Length = 396
Score = 196 bits (499), Expect = 6e-47, Method: Composition-based stats.
Identities = 116/376 (30%), Positives = 194/376 (51%), Gaps = 36/376 (9%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++KY+P F ++ Q + +++ N + GR+ Y+F G RG GKT+ A++F+ ALNC
Sbjct: 6 IARKYRPAKFADITAQEHITRTIQNALRMGRLGHGYIFSGLRGVGKTTAARVFAKALNCQ 65
Query: 521 AT--------DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D T+PCG C C DF +G S N E D + +D +R + +++ G
Sbjct: 66 RMIDDADWLRDVTEPCGECESCRDFETGTSLNIAEFDAASNNSVDDIRALRENVRYG--P 123
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R++V++IDE H+L + AFLK LEEPP +FIF TT++ +P +I SRCQ++ F
Sbjct: 124 QKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNF 183
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR----- 687
+I +I +L+ I E + VEPDAL L+ A GS+RDA+++LDQ+ +
Sbjct: 184 KRIPLPEIQQQLQGICESEGIKVEPDALQLVCRKAQGSMRDAQSILDQVIAFSAQSGGDG 243
Query: 688 -ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPM----VLMSQLA 742
I+ V EL+ + +E+L + + + D ++ A+ ++ +G D L+ L
Sbjct: 244 AISYQNVAELLNYIDDEQLFAVTDAIAAGDAPAMIEVAQFVIQNGYDEQDFLEKLIEHLR 303
Query: 743 SLIM-------------DIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERC 789
+L+M D + Y + +L ++ L E +K+L+ E
Sbjct: 304 NLLMVQNLRSSRLVERPDAVRERYEADAGKFSARQLMQMA---SFLLETQKELKFQFEYQ 360
Query: 790 TWFTATLLQLGSMHSP 805
F LL+L +H P
Sbjct: 361 FRFELALLRLIELHLP 376
>gi|421852708|ref|ZP_16285393.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
gi|371479039|dbj|GAB30596.1| DNA polymerase III gamma/tau subunit [Acetobacter pasteurianus
subsp. pasteurianus LMG 1262 = NBRC 106471]
Length = 673
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/302 (33%), Positives = 171/302 (56%), Gaps = 14/302 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 59 RVLARKYRPTTFDDLIGQEAMVRTLRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 118
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C+ D PCG C C ++ + + +E+D ++ G+D VR I++ +
Sbjct: 119 CIGPDGKGGPTADPCGVCANCVAILNDRHPDVLEMDAASRTGVDDVREIIE--ATRFRPM 176
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ++
Sbjct: 177 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPAQVTFIFATTELRKVPVTVLSRCQRFDLR 236
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK------- 686
++ ++V I+ +E++ + DAL L+A ADGS+RD ++LDQ G
Sbjct: 237 RVPQSELVGLFSCIAEKEHVRLSSDALALVARAADGSVRDGLSLLDQAIAQGTGQTDADG 296
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
I ++++++++G+ E + +LLE ++ + + G DP +++ + L+
Sbjct: 297 VIGATVISDMLGLADREVVFDLLEAVLTGKPEQALALLDAAYARGADPGLVLGDMLELVH 356
Query: 747 DI 748
+
Sbjct: 357 TV 358
>gi|34558379|ref|NP_908194.1| DNA polymerase III subunits gamma and tau [Wolinella succinogenes
DSM 1740]
gi|34484098|emb|CAE11094.1| DNA POLYMERASE III SUBUNITS GAMMA AND TAU [Wolinella succinogenes]
Length = 544
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/263 (39%), Positives = 159/263 (60%), Gaps = 11/263 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L+ KY+P F++LIGQ+ + Q+L + GR++ YLF G RG+GKTS+A+IFS ALN
Sbjct: 3 QALALKYRPTRFEDLIGQDPISQTLSLALDSGRLSHAYLFSGLRGSGKTSSARIFSKALN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILK----HLSAGLPSAS 574
C + PC C C G+ + +E+D + + +D +R +++ H + G
Sbjct: 63 CAQGPSSTPCDVCENCLAAKEGRHMDIIEMDAASSRKIDDIRDLIEQTKYHPAMG----- 117
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
RFK+F+IDE H+L + + A LK LEEPP V FI TTD +P +I SR Q + F K
Sbjct: 118 -RFKIFIIDEVHMLTKEAFNALLKTLEEPPPYVKFILATTDPLKLPATILSRTQHFRFKK 176
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I D++A ++KI EN+ EP+AL++IA + GSLRD T+LDQ + K +T +LV
Sbjct: 177 IAHRDVIAHIQKILHLENVPFEPEALEMIARSGGGSLRDTLTLLDQSIIFCKGNLTPALV 236
Query: 694 NELVGVVSEEKLLELLELAMSSD 716
+++G+V E L L + S D
Sbjct: 237 AQMLGLVDPELLERLFDAIFSHD 259
>gi|167569714|ref|ZP_02362588.1| DNA polymerase III subunits gamma and tau [Burkholderia
oklahomensis C6786]
Length = 553
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +L+S + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELMSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|385816966|ref|YP_005853356.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
gi|327182904|gb|AEA31351.1| DNA polymerase III subunits gamma and tau [Lactobacillus amylovorus
GRL1118]
Length = 602
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 164/287 (57%), Gaps = 3/287 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E A+ +IA ADG +RDA ++LDQ LS + + ++
Sbjct: 182 DLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
G + + ++L +S D +K A+E +D G ++ +L +
Sbjct: 242 GFADRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDM 288
>gi|265751132|ref|ZP_06087195.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
gi|263238028|gb|EEZ23478.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
Length = 603
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/376 (30%), Positives = 195/376 (51%), Gaps = 18/376 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPDLTQSGSSR 814
+ PD + R
Sbjct: 359 CAQLTLPDADDASGGR 374
>gi|238027056|ref|YP_002911287.1| DNA polymerase III subunits gamma and tau [Burkholderia glumae
BGR1]
gi|237876250|gb|ACR28583.1| DNA polymerase III, subunits gamma and tau [Burkholderia glumae
BGR1]
Length = 861
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 117/353 (33%), Positives = 190/353 (53%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VMHLERILGEERVAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ SSD E + A E+ + + LA L+ I +
Sbjct: 244 LDQTYMVRLLDAIASSDGPEILAIADEMALRSLSFSTALQDLAGLLHRIAWAQFA-PASV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R AL ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAEALSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|258404639|ref|YP_003197381.1| DNA polymerase III subunits gamma and tau [Desulfohalobium
retbaense DSM 5692]
gi|257796866|gb|ACV67803.1| DNA polymerase III, subunits gamma and tau [Desulfohalobium
retbaense DSM 5692]
Length = 538
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/284 (34%), Positives = 159/284 (55%), Gaps = 3/284 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ Y+P F ++GQ V L + ++AP YLF G RG GKT+ A+I + A+NC
Sbjct: 6 LTHTYRPQTFSTVVGQKQVRTILSRAAAENQVAPAYLFSGTRGVGKTTVARILAKAINCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PC CR C + G + +E+DG + G+D VR + + + G S R+KV
Sbjct: 66 QGPASEPCNQCRHCREITQGTGVDVVEIDGASHTGVDHVRKLKEDV--GYAPLSCRYKVI 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP + +FI TT+ P +I SRCQ ++F +++ ++
Sbjct: 124 IIDEAHMLSKAAFNALLKTLEEPPPQAIFIMATTEPHRFPATIISRCQHHIFQRLRQEEL 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-KRITSSLVNELVGV 699
LR++ E + ++ +A+ LIA GS+RDA ++L Q+ LG +R+ S+ V E++G+
Sbjct: 184 TDHLRRVLENEAIEMDAEAVRLIARKGAGSVRDAMSLLAQVLALGQRRLESAHVREVLGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
+E LL L E D R ++D G+D + +L +
Sbjct: 244 AGQETLLSLFEALRDQDCIAINTVLRSVLDQGLDLAFFLRELTA 287
>gi|395782558|ref|ZP_10462944.1| DNA polymerase III, subunit gamma and tau [Bartonella
rattimassiliensis 15908]
gi|395417295|gb|EJF83634.1| DNA polymerase III, subunit gamma and tau [Bartonella
rattimassiliensis 15908]
Length = 646
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 167/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N +GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFEKGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G+ + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTKDINQPTTILDSLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPSHVKFIFATTEIRKVPITILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ + LR+I+ E ++VE AL +I A+GS RDA ++ DQ ++ + + V
Sbjct: 189 IESKALSTHLRQIAKYEKVDVEDQALAMIVRAAEGSARDALSIFDQAIAHSNGNVNAIAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M D + R D+G DP+ ++++LA
Sbjct: 249 RTMLGLADQARIIDLFEFIMKGDVVNALHELRNQYDAGADPLTILTELADF 299
>gi|419780141|ref|ZP_14305991.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK100]
gi|383185300|gb|EIC77796.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK100]
Length = 552
Score = 196 bits (499), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 172/294 (58%), Gaps = 4/294 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +E+++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLV 294
>gi|452204864|ref|YP_007484993.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
BTF08]
gi|452111920|gb|AGG07651.1| DNA polymerase III subunit gamma and tau [Dehalococcoides mccartyi
BTF08]
Length = 570
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 111/274 (40%), Positives = 161/274 (58%), Gaps = 6/274 (2%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+K++P +L+GQ V +L N +S RIA YLF GPRGTGKTST +I + A+NC T
Sbjct: 11 RKWRPQTLADLVGQEHVAHTLKNALSSERIAQAYLFCGPRGTGKTSTGRILAKAVNCT-T 69
Query: 523 DQTK--PCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+Q K PC C C G S + +E+D + G+D +R LK PS + +KV+
Sbjct: 70 NQGKGEPCNTCPMCLSITEGSSMDIIEIDAASNTGVDDIRE-LKEKVQYSPSLA-NYKVY 127
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP RV+FI TT+I V +I SRCQ++ F+++ D+
Sbjct: 128 IIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLVDM 187
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
+L KIS E +NVEP+AL LIA +A GS RD E +L Q+ + G I+ S V +G+
Sbjct: 188 TRKLGKISLAEGINVEPEALKLIARSAGGSFRDGENLLQQIATTYGAEISLSQVQAALGI 247
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
+E++ L E + D +K ++ G+D
Sbjct: 248 SGDERIKALAENILKKDIKNGLKTLNAVLADGLD 281
>gi|421866967|ref|ZP_16298629.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
H111]
gi|358073131|emb|CCE49507.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
H111]
Length = 793
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVHLLDALAAGNGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|251772822|gb|EES53382.1| DNA polymerase III, subunits gamma and tau [Leptospirillum
ferrodiazotrophum]
Length = 576
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 127/362 (35%), Positives = 190/362 (52%), Gaps = 29/362 (8%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL++ Y+P F +LIGQ VV+SL +S G + YLF G RG GKT+ A+I + A+NC
Sbjct: 6 SLARLYRPRTFSDLIGQEAVVRSLTRGLSSGVMTQAYLFSGERGVGKTTVARILAKAINC 65
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C + G+S + E+DG + G+D VR + + L P S R ++
Sbjct: 66 QSGPTATPCLECSSCLEIAEGRSPDVTEMDGASHTGVDDVRTLRESLVYA-PLTS-RSRI 123
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+IDE H+L + + A LK LEEPP VVFI TT+ +P ++ SRCQ + F +
Sbjct: 124 VIIDEVHMLSTSAFNALLKTLEEPPPHVVFILATTEAHKIPDTVLSRCQHFRFRLLTVSQ 183
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNELVG 698
I R+ + EN+++ P ++A A+GSLRDA ++LDQL G+ +T + V +L+G
Sbjct: 184 ISDRILHVCRSENISLNPTVTGMVARAAEGSLRDALSLLDQLLRTGGESLTPADVADLLG 243
Query: 699 VVS---EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
V EEK+L + L D + T++ AR +D+GVDP + LA DI+ T+
Sbjct: 244 VTDHALEEKMLAAILLG---DLSATLRTARTALDTGVDPRAQVRSLARRFRDILHS--TL 298
Query: 756 GGRSL------------------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLL 797
G SL + L+ AL +L + E LR S + F L
Sbjct: 299 DGTSLDSPIYGWIPESVQALPLDPPPNIFFLEQALSVLVKGEDDLRRSPQPAITFELLLA 358
Query: 798 QL 799
+L
Sbjct: 359 RL 360
>gi|320449175|ref|YP_004201271.1| DNA polymerase III holoenzyme subunit tau [Thermus scotoductus
SA-01]
gi|320149344|gb|ADW20722.1| DNA polymerase III holoenzyme, subunit tau [Thermus scotoductus
SA-01]
Length = 492
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 135/409 (33%), Positives = 207/409 (50%), Gaps = 19/409 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++ +P+ F+EL+GQ V + LV I GR+A YLF GPRG GKT+TA++ + A+ C
Sbjct: 3 ALYRRVRPLTFEELVGQEHVKEPLVRAIREGRLAQAYLFSGPRGVGKTTTARLLAMAVGC 62
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PCG C C G + +E+D + ++ VR + + + P ++PR KV
Sbjct: 63 QGAE--RPCGVCAHCQAVQKGAHPDVVEIDAASNNSVEDVRELRERILLA-PLSAPR-KV 118
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F++DE H+L + A LK LEEPP V+FIF TT+ + +P +I SR Q Y F ++ + +
Sbjct: 119 FILDEAHMLSKSAFNALLKTLEEPPPHVLFIFATTEPERMPPTILSRTQHYRFRRLTEEE 178
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I +L++I E E DAL L+A +DG+LRDAE++LD+L LL +T V E +G+
Sbjct: 179 IAFKLQRILKEMGREAEEDALLLVARISDGALRDAESLLDRLLLLEGPLTRKQVEEALGL 238
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
E L L D E + AR L G P L L ++ + + + + G
Sbjct: 239 PPREALSRLARGLARGDLKEVLSEARGLYAKGFAPRSLAGGLMEVLREALYAAHGLPGEG 298
Query: 760 LTEAELERLKHALKLLSEAEKQLRLSSERC-----------TWFTATLLQLGSMH-SPDL 807
L EA E L AL L EA ++L S+ + A+L Q G P
Sbjct: 299 L-EAPPEALLGALTALDEAMERLAKRSDLLALEAALLQAARVFPAASLFQPGKGEVQPTA 357
Query: 808 TQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLRE 856
S ++ E+P+ R+ R P++ P + P RE
Sbjct: 358 GPSSGEGVRAEAALPEEPAHVRRQGA--SREDLPEFHPTKPLVPPGARE 404
>gi|421467594|ref|ZP_15916200.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
multivorans ATCC BAA-247]
gi|400233521|gb|EJO63059.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
multivorans ATCC BAA-247]
Length = 363
Score = 196 bits (498), Expect = 6e-47, Method: Composition-based stats.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQ------------LRLSSERCTWFTATLLQL 799
E L+ +LLS + Q L L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|393784549|ref|ZP_10372712.1| DNA polymerase III, subunit gamma and tau [Bacteroides salyersiae
CL02T12C01]
gi|392665530|gb|EIY59054.1| DNA polymerase III, subunit gamma and tau [Bacteroides salyersiae
CL02T12C01]
Length = 618
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 116/364 (31%), Positives = 198/364 (54%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPSTFESVVGQRALTTTLKNAIATQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCVA-TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T+ + C C C F +S N E+D + +D +R +++ + +P
Sbjct: 61 KTINCMTPTEDGEACNACESCVAFNEQRSYNIHELDAASNNSVDDIRQLVEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSASAFNAFLKTLEEPPRHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++++EN+ EP+AL++IAL ADG +RDA ++ DQ +S G IT
Sbjct: 179 RISVEDTVQHLAYVASKENITAEPEALNVIALKADGGMRDALSIFDQVVSFTGGHITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E L + + + ++ + ++++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFRLTDCFLENKVSDALLLFNDVLNKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -AGTY-------TIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A T +I R +A+ L L A+KL ++ + R S + L+Q
Sbjct: 299 DAATLALLEVGASIRQRYQEQAQKCPLPFLYRAMKLCNDCDMNYRASKNKRLLVELALIQ 358
Query: 799 LGSM 802
+ +
Sbjct: 359 VAQL 362
>gi|418540663|ref|ZP_13106188.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1258a]
gi|418546908|ref|ZP_13112094.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1258b]
gi|385360797|gb|EIF66704.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1258a]
gi|385362707|gb|EIF68512.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1258b]
Length = 825
Score = 196 bits (498), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|418382982|ref|ZP_12966901.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 354a]
gi|385376821|gb|EIF81456.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 354a]
Length = 825
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|433771475|ref|YP_007301942.1| DNA polymerase III, subunit gamma/tau [Mesorhizobium australicum
WSM2073]
gi|433663490|gb|AGB42566.1| DNA polymerase III, subunit gamma/tau [Mesorhizobium australicum
WSM2073]
Length = 608
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F EL+GQ +V++L N + GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 21 RVLARKYRPSNFSELVGQEPMVRTLTNAFATGRIAQAWMLTGVRGVGKTTTARILARALN 80
Query: 519 CVATDQTKP----CGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
+P C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 81 YKTATTDQPSVDLAVLGEHCQAIMEGRHVDVIEMDAASHTGIDDIRDIIERVRYAPVSA- 139
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 140 -RYKVYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 198
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I G +V+ L I+ +E ++V+ DAL +IA A+GS RD+ ++LDQ G +++ V
Sbjct: 199 IDAGALVSHLSSIAGKEGISVDDDALAMIARAAEGSARDSLSILDQAIAHGAGSVSAEAV 258
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E M D A + R D+G DP +++ LA
Sbjct: 259 RAMLGLADRARIVDLFEHVMKGDVAAALGEFRAQYDTGADPAAVLTDLAEF 309
>gi|357236416|ref|ZP_09123759.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
gi|356884398|gb|EHI74598.1| DNA polymerase III subunit gamma and tau [Streptococcus criceti
HS-6]
Length = 563
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/293 (36%), Positives = 173/293 (59%), Gaps = 8/293 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F+EL+GQ +V +L ++ G+I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFEELVGQEVVATTLRQAVASGKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C+D G + +E+D + G+D +R I + S PS + +K
Sbjct: 63 CPHQVDGEPCNQCDICHDITEGSLEDVIEIDAASNNGVDEIREI-RDKSTYAPSRA-TYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQA 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLG-KRITSSLVNEL 696
I + +I +E++ E +AL+LIA A+G +RDA ++LDQ LSL ++T+++ E+
Sbjct: 181 AIRQHMAEILDKESIAYEDEALNLIARQAEGGMRDALSILDQALSLSADNQVTAAIAEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G V + L + L + D+ + + DSG MS+ A+ ++D +
Sbjct: 241 TGSVGQAALDDYLAHLIQKDSLAALTDLNTIFDSGKS----MSRFATDLLDYL 289
>gi|156742265|ref|YP_001432394.1| DNA polymerase III subunits gamma and tau [Roseiflexus castenholzii
DSM 13941]
gi|156233593|gb|ABU58376.1| DNA polymerase III, subunits gamma and tau [Roseiflexus
castenholzii DSM 13941]
Length = 644
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 188/345 (54%), Gaps = 17/345 (4%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+++L ++Y+ FDELIGQ VV++L N I+ GR+A YLF GPRG GKT+ A++ + A
Sbjct: 2 TVQALYRRYRSQTFDELIGQEHVVRTLRNAIAEGRVAHAYLFTGPRGVGKTTVARLLAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC A +PCG C C G++ + +E+D + ++ R I++ + A R
Sbjct: 62 VNCTAPPAERPCGVCESCRSIAEGRAVDVIEMDAASHTSVEDAREIIERVQ--FRPAVAR 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
KV++IDE H+L + + A LK LEEPP +FI TT++ VP +I SRCQ+++FN+
Sbjct: 120 TKVYIIDEVHMLSTAAFNALLKTLEEPPPHALFILATTEVHKVPATILSRCQRFVFNRHT 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695
I A LR I+ +E + +EP A + IA A GS+RDA ++LDQL G ++ V
Sbjct: 180 VASIAAHLRMIATQEGVTLEPGAAEAIARAATGSMRDALSVLDQLMAYGGGTVSLEQVRN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKR--------------ARELMDSGVDPMVLMSQL 741
L+G +++ L++ +++D ++ R+L++ M++ +
Sbjct: 240 LLGASEMQEVTTLVDALIAADLPGALRVVADVAAAGADLRQFTRDLVERLRALMLICAGA 299
Query: 742 ASLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSS 786
++D+ R L L +KL SE + QLR+SS
Sbjct: 300 DRSLLDVAEEEAAQIERQARTVSLGDLMRWVKLFSELDYQLRISS 344
>gi|386861519|ref|YP_006274468.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1026b]
gi|418539371|ref|ZP_13104967.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1026a]
gi|385345995|gb|EIF52688.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1026a]
gi|385658647|gb|AFI66070.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1026b]
Length = 825
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|366163519|ref|ZP_09463274.1| DNA polymerase III subunits gamma and tau [Acetivibrio
cellulolyticus CD2]
Length = 555
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 120/356 (33%), Positives = 196/356 (55%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P+ F++++ Q VV++L N+IS GRIA YLF G RGTGKT+ AKIFS A+NC
Sbjct: 5 ALYRKWRPMVFEDVVEQEHVVKTLKNSISVGRIAHAYLFCGTRGTGKTTMAKIFSRAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C ++G + +E+D + +D VR I + PS + R+KV
Sbjct: 65 ENSTNGDPCNECEICKGILNGSLLDVIEIDAASNNSVDNVREIRDEVVYA-PSKA-RYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L S + A LK LEEPP VVFI TT+ +P +I SRCQ++ F +I
Sbjct: 123 YIIDEVHMLSSGAFNALLKTLEEPPGHVVFILATTEPHKLPATILSRCQRFDFRRIPVES 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV R+ I+ +++E + L LIA +DG+LRDA ++LDQ +SL K +T V +VG
Sbjct: 183 IVKRIEHIAKSSEVSIENEGLKLIARMSDGALRDAISILDQCISLGNKHLTYDDVLSVVG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+V+ + ++++ S + + + L+ G + +S L +++ + +
Sbjct: 243 IVNNTFIADMVDAINSKEVEKVLYLINVLVMDGKNITQFVSDLVLYYRNLLICSTSRNPE 302
Query: 759 SLTEAE---LERLK------------HALKLLSEAEKQLRLSSERCTWFTATLLQL 799
+ EA ++R+K A+K LS E ++ S+ L++L
Sbjct: 303 EIIEASKEMIQRMKAQSQGLSNIEITSAIKELSTLEATMKWSTHARVLLEVALIKL 358
>gi|357013828|ref|ZP_09078827.1| DNA polymerase III [Paenibacillus elgii B69]
Length = 582
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 128/426 (30%), Positives = 213/426 (50%), Gaps = 33/426 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L + ++P F +++GQ +VQ+L N++ GR + YLF GPRGTGKT+TAKI + A+NC
Sbjct: 5 ALYRTWRPQSFHDMVGQKHIVQTLQNSLREGRFSHAYLFSGPRGTGKTTTAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C G + +E+D + +G+D +R I + R KV
Sbjct: 65 LNGPGVEPCNECDACVRITEGTVMDVVEIDAASNRGVDEIRDIRDKVKYA--PTEVRQKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP V+FI TT+ +P +I SRCQ++ F ++ +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPAHVMFILATTEPHKLPATIISRCQRFDFRRVSLEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
V RLR++ A+E + + DAL IA +DG +RDA ++LDQ ++ G ++T V + G
Sbjct: 183 QVERLRQVCADERIECDDDALAFIARLSDGGMRDALSLLDQIIAFSGAKVTYDDVLSITG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
++ ++ L+ D ++ M G M L D++ G +
Sbjct: 243 GMASDQFERLVGAIQDRDVGAALRLIDTFMQEGKSADKCMESLIYYFRDLLMVKMVPGSQ 302
Query: 759 SLTEAELERLKHA--------------LKLLSEAEKQLRLSSERCTWFTATLLQLGSMHS 804
+LTE L+ + A + L+ + +++ S + T L++L S
Sbjct: 303 ALTERILDVKRFAEVAQRFSADALIAMIDTLNYYQTEMKYSVQPQTLLEVALMKLCSQAG 362
Query: 805 PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSG--------PQYMPQNAVSPASLRE 856
+G S +T E P+S ++ VV + M+ Q + Q S AS
Sbjct: 363 ASSAPAGGS------STGEAPASERQDGVVGQLMNRIQRLEEQLSQLLKQGVASAAS--S 414
Query: 857 PVNGNS 862
PV+G S
Sbjct: 415 PVSGPS 420
>gi|170733187|ref|YP_001765134.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
MC0-3]
gi|169816429|gb|ACA91012.1| DNA polymerase III, subunits gamma and tau [Burkholderia
cenocepacia MC0-3]
Length = 793
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|325956089|ref|YP_004286699.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
gi|325332654|gb|ADZ06562.1| DNA polymerase III subunits gamma and tau [Lactobacillus
acidophilus 30SC]
Length = 602
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 164/287 (57%), Gaps = 3/287 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E A+ +IA ADG +RDA ++LDQ LS + + ++
Sbjct: 182 DLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
G + + ++L +S D +K A+E +D G ++ +L +
Sbjct: 242 GFADRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDM 288
>gi|358054236|ref|ZP_09147480.1| DNA polymerase III gamma and tau subunits [Staphylococcus simiae
CCM 7213]
gi|357256766|gb|EHJ07094.1| DNA polymerase III gamma and tau subunits [Staphylococcus simiae
CCM 7213]
Length = 568
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 108/350 (30%), Positives = 186/350 (53%), Gaps = 6/350 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P FD+++GQ V ++L N IS+ + + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFDDVVGQEHVTKTLKNAISKNKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ + +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSTDGEPCNECAICTGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
IV RL+ ++ ++L+ E AL+ IA ++G +RDA +++DQ G ++T
Sbjct: 180 ISQIVERLQYVADAQHLDYEDHALEFIAKASEGGMRDALSIMDQAIAFGDGQLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G V +E L +L E + D +R + G + L++ + + D I
Sbjct: 240 VTGSVHDEALNQLFEEIVKGDVQAAFQRYHHFIAEGKEVNRLINDMIYFVRDTIMNKTAD 299
Query: 756 GGR---SLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+L +L L + ++++ +R S + F L++L +
Sbjct: 300 KENDYDALMTLDLNMLYQMIDIINDTLVSIRFSVNQNVHFEVLLVKLAEL 349
>gi|237710325|ref|ZP_04540806.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA]
gi|345514864|ref|ZP_08794370.1| hypothetical protein BSEG_00918 [Bacteroides dorei 5_1_36/D4]
gi|423228508|ref|ZP_17214914.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL02T00C15]
gi|423239583|ref|ZP_17220699.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL03T12C01]
gi|423243772|ref|ZP_17224848.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL02T12C06]
gi|229434700|gb|EEO44777.1| hypothetical protein BSEG_00918 [Bacteroides dorei 5_1_36/D4]
gi|229455787|gb|EEO61508.1| DNA polymerase III subunit gamma/tau [Bacteroides sp. 9_1_42FAA]
gi|392636254|gb|EIY30138.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL02T00C15]
gi|392644662|gb|EIY38400.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL02T12C06]
gi|392646317|gb|EIY40034.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei
CL03T12C01]
Length = 603
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/368 (31%), Positives = 193/368 (52%), Gaps = 18/368 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G IT
Sbjct: 179 RIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGGNITYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII--- 749
V E + V+ E +L +L + + E++ +++ G D ++ L+S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFRDLLVSK 298
Query: 750 -----------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
AG + + + L A+KL ++ + R S + TL+Q
Sbjct: 299 DPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLVELTLIQ 358
Query: 799 LGSMHSPD 806
+ PD
Sbjct: 359 CAQLTLPD 366
>gi|160933397|ref|ZP_02080785.1| hypothetical protein CLOLEP_02242 [Clostridium leptum DSM 753]
gi|156867274|gb|EDO60646.1| DNA polymerase III, subunit gamma and tau [Clostridium leptum DSM
753]
Length = 564
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 112/354 (31%), Positives = 192/354 (54%), Gaps = 20/354 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L +K++P F +++GQ V +L N + GRIA YLF G RGTGKT+ AKI + A+NC+
Sbjct: 8 LYRKWRPQVFSDVVGQPQVTVTLQNELKAGRIAHAYLFTGSRGTGKTTCAKILAKAVNCL 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + PCG C C +G + +E+D + G++ +R + + A A+ +++V+
Sbjct: 68 SLKEGDPCGECESCVGIDNGSVMDVVEIDAASNNGVENIRNLREE--ASFTPAAAKYRVY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP VVFI TT++ +P +I SRCQ++ F++I I
Sbjct: 126 IIDEVHMLSIGAFNALLKTLEEPPAHVVFILATTEVHKLPATILSRCQRFDFHRIDPEVI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
RL+ ++ EEN ++E +A LIA ADG +RDA ++LDQ IT +V+E G+
Sbjct: 186 ADRLQFVAGEENAHLEREAALLIARIADGGMRDALSLLDQCMGRSSEITLEVVSETAGLA 245
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSL 760
+ L L + + + + +++ EL + D + L +LA +++
Sbjct: 246 GRDHLFSLADTVLRQNGGQALEQIDELHKASKDMVRLCEELAGHFRNLML---------- 295
Query: 761 TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSR 814
L+ +K+ L+ ++ + + + FT G++H+ D+ Q+ R
Sbjct: 296 ----LKTMKNPQNLIVVSQDEYQKLQVQAEAFTLA----GTIHAIDVLQAAKER 341
>gi|410656845|ref|YP_006909216.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|410659885|ref|YP_006912256.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
gi|409019200|gb|AFV01231.1| DNA polymerase III subunits gamma and tau [Dehalobacter sp. DCA]
gi|409022241|gb|AFV04271.1| DNA polymerase III subunits gamma and tau, DnaX [Dehalobacter sp.
CF]
Length = 558
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 177/309 (57%), Gaps = 5/309 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ V +L N +S+ ++A Y+F GPRGTGKTS AKI + ALNC
Sbjct: 5 ALYREWRPKKFSEMVGQEHVKITLTNALSQNKVAHAYMFSGPRGTGKTSAAKILAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
D +PC C C D G + + +E+D + +G+D +R + + + L S+ ++KV
Sbjct: 65 SDRDGAEPCSRCASCLDIEQGNAMDVLEIDAASNRGIDEIRDLREKVK--LASSGGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVF+ TT+ VP +I SR Q++ F++I
Sbjct: 123 YIIDEVHMLTPEAFNALLKTLEEPPVNVVFVLATTEAHKVPLTILSRVQRFEFHRISAEG 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I RL+++ ++E AL +IA A+G LRDA ++LDQ L I + +++G+
Sbjct: 183 IAMRLQEVCQALGRDIETKALRVIAAKAEGGLRDALSILDQCLLQDDPIRMEHIYQVIGM 242
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V E +L + ++ D A T+ + E + G DP ++ +L + A Y GG+
Sbjct: 243 VGETFSADLTDSLLNQDYALTLAKLGEGISLGRDPRQIIRELLDYLRQ--ALLYLTGGQE 300
Query: 760 -LTEAELER 767
L E+ R
Sbjct: 301 PLMAPEMTR 309
>gi|335031226|ref|ZP_08524676.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
gi|333770144|gb|EGL47201.1| DNA polymerase III, subunit gamma and tau [Streptococcus anginosus
SK52 = DSM 20563]
Length = 554
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 113/315 (35%), Positives = 182/315 (57%), Gaps = 8/315 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V +L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFGQLVGQEVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + + K
Sbjct: 63 CPNQKGGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDI-RDKSTYAPSLA-KHK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DIV + I +EN++ E +A+ +IA A+G +RDA ++LDQ LSL ++T+++ E+
Sbjct: 181 DIVEHIAWILQQENIDFENEAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
G +S E L + ++ DT+ +K + DSG + ++ L + D++ G
Sbjct: 241 TGSISLEALDAYVAAVLAHDTSVALKNLDVIFDSGKNMARFVTDLLQYLRDLL--IVKTG 298
Query: 757 GRS--LTEAELERLK 769
G + +E+ LE LK
Sbjct: 299 GENTHTSESFLENLK 313
>gi|221215165|ref|ZP_03588132.1| DNA polymerase III, subunits gamma and tau [Burkholderia
multivorans CGD1]
gi|221165101|gb|EED97580.1| DNA polymerase III, subunits gamma and tau [Burkholderia
multivorans CGD1]
Length = 498
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|238917931|ref|YP_002931448.1| DNA polymerase [Eubacterium eligens ATCC 27750]
gi|238873291|gb|ACR73001.1| DNA polymerase [Eubacterium eligens ATCC 27750]
Length = 561
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 123/361 (34%), Positives = 195/361 (54%), Gaps = 22/361 (6%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F+++ GQ+ +V +L N I+ RI YLF G RGTGKTS AKIF+ A+N
Sbjct: 20 QALYRKWRPDNFNDVKGQDTIVTTLRNQINADRIGHAYLFCGTRGTGKTSVAKIFAKAVN 79
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PCG C C +G S N +E+D + G+D +R I + + P+ RFK
Sbjct: 80 CEHPVDGNPCGECPTCKAIAAGTSMNVIEIDAASNNGVDNIRQIREEVQYS-PTEG-RFK 137
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F++I
Sbjct: 138 VYIIDEVHMLSIGAFNALLKTLEEPPAYVIFILATTEVAKIPITILSRCQRYDFHRITIE 197
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSL-LGKRITSSLVNEL 696
I RL ++ E LNVE A+ +A ADGS+RDA ++LDQ L+ LGK + V ++
Sbjct: 198 TIAGRLSELMKAEGLNVEDKAIKYVAKAADGSMRDALSLLDQCLAFYLGKDLKYENVLDV 257
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQL 741
+G V ++L +S D A + +L+ G D ++ ++
Sbjct: 258 LGAVDTAVFSKMLSTILSGDVAVCMSLMEDLIMQGRDLSQFVTDFIWYLRNLLLIKTTKD 317
Query: 742 ASLIMDII---AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
A I D+I A + +++ L + +++LSE L+ S+++ T ++
Sbjct: 318 AERIEDVIEVSADNLEDLKKDAQNVDIDTLMYYIRVLSELSNDLKFSTQKRVKTEITFIK 377
Query: 799 L 799
L
Sbjct: 378 L 378
>gi|373455574|ref|ZP_09547403.1| DNA polymerase III, subunit gamma and tau [Dialister
succinatiphilus YIT 11850]
gi|371934667|gb|EHO62447.1| DNA polymerase III, subunit gamma and tau [Dialister
succinatiphilus YIT 11850]
Length = 643
Score = 196 bits (498), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 105/284 (36%), Positives = 168/284 (59%), Gaps = 4/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P F E++GQ + L I + R+A YLF GPRGTGKTS AKI + A+NC
Sbjct: 5 ALYRKWRPRTFTEVVGQKHISIPLQRAIEQDRLAHAYLFSGPRGTGKTSMAKILAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ + PC C+ C + +G S + E+D + +G++ +R L+ LP+ S R KV
Sbjct: 65 LHPNGVNPCNECQSCREINAGSSLDVYEIDAASNRGIEEIR-ALRESVRTLPAVS-RKKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TT+ + +P +I SRCQ+Y F++I D
Sbjct: 123 YIIDEVHMLTKEAFNALLKTLEEPPSHVLFILATTEPEKIPLTILSRCQRYEFHRISVED 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I L I+ E +L + +A DLIA+ ADG LRDA ++LDQ S K + + V +L+
Sbjct: 183 IKNHLLYIAKESHLPLTEEAADLIAVRADGGLRDALSLLDQCSSASESKVLDAPAVYDLL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
G+ ++ +L+L + D++ + ++ G +P ++ L
Sbjct: 243 GLTGKDMILDLSHHIFNGDSSSALSLFYRILQGGKEPASILRDL 286
>gi|168181143|ref|ZP_02615807.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226947244|ref|YP_002802335.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A2
str. Kyoto]
gi|387816259|ref|YP_005676603.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
gi|182668020|gb|EDT79999.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum
NCTC 2916]
gi|226840992|gb|ACO83658.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A2
str. Kyoto]
gi|322804300|emb|CBZ01850.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
H04402 065]
Length = 541
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|315037610|ref|YP_004031178.1| DNA polymerase III, subunit gamma/tau [Lactobacillus amylovorus GRL
1112]
gi|312275743|gb|ADQ58383.1| DNA polymerase III, gamma/tau subunit [Lactobacillus amylovorus GRL
1112]
Length = 602
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/287 (36%), Positives = 164/287 (57%), Gaps = 3/287 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQEAITDTLKNAIIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNKCANCIAADQGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKA 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E A+ +IA ADG +RDA ++LDQ LS + + ++
Sbjct: 182 DLEKRMKYILDQENIKYEDKAIAVIAQVADGGMRDALSILDQLLSYEKESVNYEDALQIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
G + + ++L +S D +K A+E +D G ++ +L +
Sbjct: 242 GFADRKNVEQILLKLLSKDAPAALKLAQEELDKGASSKNILDELVDM 288
>gi|167910620|ref|ZP_02497711.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 112]
Length = 409
Score = 196 bits (498), Expect = 8e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|433653778|ref|YP_007297486.1| DNA polymerase III, subunit gamma/tau [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433291967|gb|AGB17789.1| DNA polymerase III, subunit gamma/tau [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 533
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 118/363 (32%), Positives = 206/363 (56%), Gaps = 16/363 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQN +V++L N I GRI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPRNFSEVLGQNHIVRTLKNQIKTGRIGHAYLFCGTRGTGKTSVAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + +PC C+ C + + +E+D + +D VR + ++ PS ++K
Sbjct: 63 CPNSVEGEPCNRCQICESANNNSLIDIIEIDAASNNSVDDVRELRDNIIYA-PSIC-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP +FI TT+ + +P +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSGSAFNALLKTLEEPPSHAIFILATTEPNKIPATILSRCQRFDFKRIPSR 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
I ++KI+ + N+++E A+ +IA + +GS+RDA ++L+Q +T V +++G
Sbjct: 181 VISQNIKKIAKDSNISIENSAIAMIARHGNGSMRDAISILEQCVSYNDVLTYDDVCDILG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYT 754
V+++ L L++ + E + + +LM G+D L+ + S + D++ GT +
Sbjct: 241 TVNDDTLYTLVKSINDRNAKEVINQIDKLMLYGIDVSNLIKAMLSFLRDVVIYKTCGTES 300
Query: 755 -------IGGRSL--TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH-S 804
I + L +E ++ L +A++ L + + ++R + F T+L+L + S
Sbjct: 301 EEILETEINDKILKASEFDMSFLSNAIEKLIDLQGKIRYAQSPRILFEITVLKLINPEIS 360
Query: 805 PDL 807
PD+
Sbjct: 361 PDI 363
>gi|298373537|ref|ZP_06983526.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
str. F0058]
gi|298274589|gb|EFI16141.1| DNA polymerase III, gamma/tau subunit [Bacteroidetes oral taxon 274
str. F0058]
Length = 575
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 172/292 (58%), Gaps = 4/292 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P F +IGQN + +L N I +A YLF GPRG GKT+ A+IF+ +NC
Sbjct: 8 ARKYRPATFRSVIGQNSLTTTLKNAIITRHLAHAYLFCGPRGVGKTTCARIFAKTINCSN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T++ + C C C F +S N E+D + +D +R ++K + +P R++V+
Sbjct: 68 ITEEGEACNQCESCVSFNENRSLNIFEMDAASNNSVDDIRELVKQVM--VPPQIGRYRVY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP+ +FI TT+ + +I SRCQ Y FN+I+ D
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPEYAIFILATTEKHKILPTIISRCQVYDFNRIQINDT 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELVGV 699
V L+ ++ E ++VE +AL+++A ADG++RDA ++ DQ+ S G +IT V +++ V
Sbjct: 186 VDYLKYVAQNEKIDVETEALEVMAQKADGAMRDALSIFDQIVSYCGNKITYKEVIDILNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
+ E L++++ + D ++ ++++ G D +S L+S D++
Sbjct: 246 LDYEYYLQMVDCFVRGDVVGSLMILDKIINKGFDVQSFVSGLSSHFRDLLVA 297
>gi|167836377|ref|ZP_02463260.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis MSMB43]
Length = 376
Score = 196 bits (498), Expect = 8e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFSELLSPEQVQLYYQIATLGRGELGLAPDEYAGFTMTLLRM 355
>gi|167619803|ref|ZP_02388434.1| DNA polymerase III subunits gamma and tau [Burkholderia
thailandensis Bt4]
Length = 378
Score = 196 bits (498), Expect = 8e-47, Method: Composition-based stats.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|424836504|ref|ZP_18261151.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
gi|365977030|gb|EHN13134.1| DNA polymerase III subunits gamma and tau [Clostridium sporogenes
PA 3679]
Length = 541
Score = 196 bits (498), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNLKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRSIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQAEKIRIEEIMRNIKILQEAEQQSKWVKQSRIYLELAVLKM 358
>gi|148378038|ref|YP_001252579.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 3502]
gi|153932975|ref|YP_001382437.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. ATCC 19397]
gi|153935315|ref|YP_001385990.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum A
str. Hall]
gi|421837987|ref|ZP_16272005.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
gi|148287522|emb|CAL81584.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum A str.
ATCC 3502]
gi|152929019|gb|ABS34519.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. ATCC 19397]
gi|152931229|gb|ABS36728.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum A
str. Hall]
gi|409739731|gb|EKN40308.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001627]
Length = 541
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDVEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRNIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|238922752|ref|YP_002936265.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
ATCC 33656]
gi|238874424|gb|ACR74131.1| DNA polymerase III, subunits gamma and tau [Eubacterium rectale
ATCC 33656]
Length = 523
Score = 196 bits (497), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 106/275 (38%), Positives = 160/275 (58%), Gaps = 4/275 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P F+++ GQ +V +L N I RI YLF G RGTGKT+ AKIF+ A+N
Sbjct: 4 QALYRKFRPQEFEDVKGQEHIVTTLKNQIKADRIGHAYLFCGTRGTGKTTVAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PCG C C G S N +E+D + G+D +R I + ++ P+ R+K
Sbjct: 64 CEHPVDGSPCGECPSCRAITEGSSMNVIEIDAASNNGVDNIRQIREEVTYR-PTEG-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F++I
Sbjct: 122 VYIIDEVHMLSAGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISID 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL--LGKRITSSLVNEL 696
I +RL + +E++ VE A+ +A DGS+RDA ++LDQ LG+++T V E+
Sbjct: 182 TIASRLSDLMEQEHVEVEERAIRYVAKAGDGSMRDALSLLDQCIAFHLGEKLTYENVLEV 241
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
+G V E LL + D ++ EL+D G
Sbjct: 242 LGAVDTEVFSRLLRRILDEDVTGAIRILGELIDEG 276
>gi|416187285|ref|ZP_11614155.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
M0579]
gi|325136513|gb|EGC59117.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
M0579]
Length = 738
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 167/295 (56%), Gaps = 9/295 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 35 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 94
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R IL++ P+A ++KV+
Sbjct: 95 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYA-PTAG-KYKVY 152
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 153 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 212
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 213 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 272
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDI 748
V ++ L ELL ++ D A +A+E+ D+ + + ++ Q +LI +
Sbjct: 273 VDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQHLALIQAV 327
>gi|430760123|ref|YP_007215980.1| DNA polymerase III subunits gamma and tau [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430009747|gb|AGA32499.1| DNA polymerase III subunits gamma and tau [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 619
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 166/289 (57%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F+ L+GQ VV++LVN +S GRI YLF G RG GKT+ A+I + LNC
Sbjct: 6 LARKWRPSRFENLVGQPHVVRALVNALSSGRIHHAYLFSGTRGVGKTTIARILARCLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG CR C + G+ + +EVD ++ +D R +L ++S S R+KV+
Sbjct: 66 TGVTATPCGQCRPCVEIAEGRHLDLIEVDAASRTRVDDTRELLDNVSYA--PVSGRYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L K++ A LK LEEPP V+F+ TTD +P ++ SRC ++ + I
Sbjct: 124 LVDEVHMLSEKSFNALLKTLEEPPPHVIFLLATTDPQKLPVTVLSRCLQFNLKPMPAALI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
L ++ A E + P AL +A A+GS+RDA ++ DQ ++ G + S V +++G+
Sbjct: 184 AEHLERVLASEGVAAAPGALLRLAEAAEGSMRDALSLTDQAIAYSGDELGESEVCDMIGL 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ +L ELL++ + A + REL D L+ +LA+L+ +
Sbjct: 244 LPRSRLTELLDVVWAVQGARMLGLLRELDALAPDWARLLEELAALVHGV 292
>gi|261886243|ref|ZP_06010282.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 537
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 194/355 (54%), Gaps = 13/355 (3%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+++L+ KY+P FDELIGQ+IV SL + ++ GRI YLF G RG+GKTS+A+IF+ AL
Sbjct: 1 MKALALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKAL 60
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C + PC C C G+ + +E+D + + +D +R +++H PS S RF
Sbjct: 61 LCEQGIGSHPCEVCANCVMANEGRHLDIIEMDAASHRKIDDIRELIEHTKYS-PS-SARF 118
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + + A LK LEEPP+ V FI TTD +P +I SR Q + F I
Sbjct: 119 KIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKPISK 178
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNEL 696
DI+ L I +E + EP AL++++ + GSLRD T+LDQ + +T V ++
Sbjct: 179 HDILKHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHEFVTQKAVADM 238
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G++ K+ E+L + S D + +EL SG D +++ +L + D +
Sbjct: 239 LGLLDPSKIEEVLSIVASRDRNALLNLLKEL--SGSDAELIIDELIINLKD----KFINQ 292
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSE-RCTWFTATLLQLGSMHSPDLTQS 810
+ ER ++LSEA+ L S+ T + A + L + + D+ +
Sbjct: 293 NSEFSILIFERF---FRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNLTDINDA 344
>gi|118475756|ref|YP_892561.1| DNA polymerase III subunits gamma and tau [Campylobacter fetus
subsp. fetus 82-40]
gi|118414982|gb|ABK83402.1| DNA polymerase III gamma/tau subunit [Campylobacter fetus subsp.
fetus 82-40]
Length = 529
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 122/355 (34%), Positives = 194/355 (54%), Gaps = 13/355 (3%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+++L+ KY+P FDELIGQ+IV SL + ++ GRI YLF G RG+GKTS+A+IF+ AL
Sbjct: 1 MKALALKYRPKSFDELIGQDIVANSLSHALNSGRIGHAYLFSGLRGSGKTSSARIFAKAL 60
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
C + PC C C G+ + +E+D + + +D +R +++H PS S RF
Sbjct: 61 LCEQGIGSHPCEVCANCVMANEGRHLDIIEMDAASHRKIDDIRELIEHTKYS-PS-SARF 118
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + + A LK LEEPP+ V FI TTD +P +I SR Q + F I
Sbjct: 119 KIFIIDEVHMLTREAFNALLKTLEEPPEYVKFILATTDPLKLPATILSRTQHFRFKPISK 178
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNEL 696
DI+ L I +E + EP AL++++ + GSLRD T+LDQ + +T V ++
Sbjct: 179 HDILKHLEFIMNKEGIKFEPKALEILSRSGSGSLRDTLTLLDQAIIFSHEFVTQKAVADM 238
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G++ K+ E+L + S D + +EL SG D +++ +L + D +
Sbjct: 239 LGLLDPSKIEEVLSIVASRDRNALLNLLKEL--SGSDAELIIDELIINLKD----KFINQ 292
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSE-RCTWFTATLLQLGSMHSPDLTQS 810
+ ER ++LSEA+ L S+ T + A + L + + D+ +
Sbjct: 293 NSEFSILIFERF---FRILSEAKSMLGSGSDSEFTLYIALFMMLEAFNLTDINDA 344
>gi|304387172|ref|ZP_07369415.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis
ATCC 13091]
gi|304338739|gb|EFM04850.1| DNA polymerase III, gamma/tau subunit DnaX [Neisseria meningitidis
ATCC 13091]
Length = 738
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 108/352 (30%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 35 LARKWRPKTFSDLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 94
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 95 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 152
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 153 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTSQQV 212
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 213 ADHLAHVLDSEKIAYEPVALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 272
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDIIAGTY 753
V ++ L ELL ++ D A + +A+E+ D+ + + ++ Q +LI + +
Sbjct: 273 VDKQYLYELLTGIINQDGAALLSKAQEMAACAVGFDNALGELAILLQHLALIQAVPSALA 332
Query: 754 ------TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I R E+++ ++ ++ L L+ + F TLL++
Sbjct: 333 HDDPDSDILHRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRM 384
>gi|381183647|ref|ZP_09892365.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
gi|380316455|gb|EIA19856.1| DNA polymerase III subunits gamma and tau [Listeriaceae bacterium
TTU M1-001]
Length = 574
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 174/292 (59%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FD+++GQ+ V ++L N I++ + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQSFDDVVGQSHVTKTLQNAITQNKTSHAYLFSGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + +PC C C G + + +E+D + G++ +R I + + P+ S ++K
Sbjct: 64 CENSTNGEPCNECDVCKGITDGSNPDVLEIDAASNNGVEEIRDIREKVKYA-PTVS-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H+L + + A LK LEEPP+ V+FI TT+ +P +I SR Q++ F +I
Sbjct: 122 IYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPHKLPLTIISRVQRFDFKRITTK 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELV 697
DIV R+ I EE + + AL +IA A+G +RDA ++LDQ+ G ++ E+
Sbjct: 182 DIVQRMAYILNEEKITFDEKALMIIARAAEGGMRDALSLLDQVISYGSDEVSVQDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G V++ L +L+ ++ D + +++R L+ G DP+ L+ L DI+
Sbjct: 242 GSVAQNLLTDLVAAILNQDASLSMERLSSLLLEGKDPVRLVEDLLVFFRDIL 293
>gi|134277465|ref|ZP_01764180.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 305]
gi|134251115|gb|EBA51194.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 305]
Length = 837
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|338972111|ref|ZP_08627488.1| DNA polymerase III subunits gamma and tau [Bradyrhizobiaceae
bacterium SG-6C]
gi|338234629|gb|EGP09742.1| DNA polymerase III subunits gamma and tau [Bradyrhizobiaceae
bacterium SG-6C]
Length = 621
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/294 (35%), Positives = 175/294 (59%), Gaps = 9/294 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V+++ N+ GR+ ++ G RG GKT+TA+I + ALN
Sbjct: 34 RVLARKYRPSNFDDLIGQEAMVRTISNSFETGRVPQAWILTGVRGVGKTTTARILARALN 93
Query: 519 CVATDQT--KPCGYCRE----CNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D + P + + C G+ + +E+D + G+D VR I + PS
Sbjct: 94 YELPDGSVKGPTIHMPKMGVHCQAIAEGRHLDVIEIDAASHTGVDNVRQINDSVRYA-PS 152
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
S R+K+++IDE H+L ++ + AFLK LEEPP+ F+F TT+I VP ++ SRCQ++
Sbjct: 153 LS-RYKIYIIDEVHMLSTQGFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDL 211
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSS 691
+++ ++ L I A+E + EP+AL LIA A+GS+RD+ ++LDQ ++ + +
Sbjct: 212 RRVESDVLMTHLSNILAKEGVQAEPEALGLIARAAEGSVRDSLSLLDQAIAHAAGMVRAE 271
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
V +++G+ ++++L E S D A K R+ D+G DP+V++S LA +
Sbjct: 272 DVRQMMGLADRTRVIDLFEALASGDIAAAFKEFRDQYDTGADPVVVLSDLAEFV 325
>gi|170754521|ref|YP_001779654.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum B1
str. Okra]
gi|429244929|ref|ZP_19208347.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001628]
gi|169119733|gb|ACA43569.1| DNA polymerase III, gamma and tau subunit [Clostridium botulinum B1
str. Okra]
gi|428758051|gb|EKX80505.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum
CFSAN001628]
Length = 541
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 113/356 (31%), Positives = 201/356 (56%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F E++GQ + +L N + RIA YLF G RGTGKTSTAKI S A+NC
Sbjct: 5 ALYREWRPRTFKEVVGQKHITVTLKNQVIEKRIAHAYLFCGTRGTGKTSTAKILSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C CN SG + +E+D +K+ L+ ++ +++++ P + KV
Sbjct: 65 LNPKDGEPCNECEICNKINSGTLMDVIEMDAASKRKLEDIKEVIENVKY--PPQEGKNKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L + AFLK LEEPP V+FI TTD +P +I SRCQ++ F +I++ +
Sbjct: 123 YIMDEVHMLTQEAVNAFLKTLEEPPSNVIFILATTDPQKLPITILSRCQRFDFRRIRNEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RLR I +E+ + + +L+LIA +DG++RDA ++LDQ+ G ++ V +++G
Sbjct: 183 IFERLRAIVSEQGIYADDKSLNLIARMSDGAMRDALSILDQVISTGDGKVEYDQVLDMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDP---------------MVLMSQLAS 743
+V+ E LL + + D ++++ +++ SG D MV +S+ +
Sbjct: 243 LVTNENLLRITNSIIEKDIEKSMRIIEDIVLSGKDIYNFIKDMITHLRNILMVKVSKNPN 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
I+D+ + + + +E + +K+L EAE+Q + + + +L++
Sbjct: 303 EILDMSSENIDLVKEQSEKIRIEEIMRDIKILQEAEQQSKWVKQNRIYLELAVLKM 358
>gi|332880680|ref|ZP_08448353.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|357045950|ref|ZP_09107580.1| DNA polymerase III, subunit gamma and tau [Paraprevotella clara YIT
11840]
gi|332681314|gb|EGJ54238.1| DNA polymerase III, subunit gamma and tau [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|355530956|gb|EHH00359.1| DNA polymerase III, subunit gamma and tau [Paraprevotella clara YIT
11840]
Length = 604
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 210/398 (52%), Gaps = 19/398 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P FD ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+ +NC+
Sbjct: 8 ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+D + C C C F +S N E+D + ++ +R +++ + +P R+KVF
Sbjct: 68 PSDNREACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVR--IPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y FN++ I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQTI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V L+ ++ +E EP+AL++IA ADG +RDA ++ DQ +S G +T V E + V
Sbjct: 186 VNHLKFVADKEGYAYEPEALNIIAQKADGGMRDALSIFDQTVSFTGGTLTYKKVIENLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII----AGTYTI 755
+ E L + + ++ + + E+++ G + ++ LA+ + D++ A T +
Sbjct: 246 LDYEYYFRLTDHFLKNEAVQCMLVFNEILEKGFEGSHFITGLAAHLRDLLVSRDAMTLPL 305
Query: 756 -----GGRSLTEAELER-----LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH-S 804
R+ + + +R L A+KL S+ + R S + TL+QL +
Sbjct: 306 LEVSDSIRARYQEQSQRCTPKFLYRAIKLCSDCDLNYRASKNKRLLVEITLIQLSQLTLE 365
Query: 805 PDLTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQ 842
D SG S ++ + + P+ T ++ PQ
Sbjct: 366 DDSVGSGRSPEKTLKPLFDQPAGTVQQTAAPVNPQKPQ 403
>gi|445112454|ref|ZP_21377102.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
gi|444841678|gb|ELX68692.1| DNA polymerase III, subunit gamma and tau [Prevotella nigrescens
F0103]
Length = 594
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 115/369 (31%), Positives = 198/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ F ++GQ + +L+N + R+A YLF GPRG GKT+ A+IF+ +NC
Sbjct: 8 ARKYRPMSFASVVGQQALTTTLMNAVKSKRLAHAYLFCGPRGVGKTTCARIFAKTINCEH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
TDQ + C C C F G+S N E+D + ++ ++ +++ +P R+KVF
Sbjct: 68 PTDQGEACNECESCRAFNEGRSYNIFELDAASNNSVENIKTLMEQ--TRIPPQIGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L S + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ I
Sbjct: 126 IIDEVHMLSSSAFNAFLKTLEEPPAHVIFILATTEKHKILPTILSRCQIYDFERMSVPGI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+ L+ ++ +E + E AL++IA ADG +RDA ++ DQ + + IT V E + V
Sbjct: 186 INHLKAVAEKEGIAYEEAALNVIAEKADGGMRDALSIFDQAASFSQGNITYRKVIEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + +++LA+ + E + +++ G D L++ LAS + +++ T+
Sbjct: 246 LDADNYFNIMDLAVENKVPEIMVLLNNVINKGFDGGNLINGLASHVRNVLMAKDPQTLPL 305
Query: 758 RSLTEAELER------------LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++ + +R L AL++++ + + R SS + TL+Q+ +
Sbjct: 306 LETSDEQRQRYRQQAAKCPTQFLYKALEIMNRCDVEYRQSSNKRLLVELTLIQVAQITQK 365
Query: 806 DLTQSGSSR 814
D SGS R
Sbjct: 366 DDDSSGSGR 374
>gi|408418795|ref|YP_006760209.1| DNA polymerase III subunit gamma/tau DnaX [Desulfobacula toluolica
Tol2]
gi|405106008|emb|CCK79505.1| DnaX: DNA polymerase III, subunit gamma/tau [Desulfobacula
toluolica Tol2]
Length = 565
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 101/275 (36%), Positives = 165/275 (60%), Gaps = 4/275 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L+ KY+P FD+++GQ V +L N IS R+A LF GPRGTGKT+ A+I + A+NC
Sbjct: 6 LAIKYRPQTFDDVVGQPHVTTTLTNAISSDRVAHALLFTGPRGTGKTTIARILARAMNCK 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PC C+ C D I G + E+DG + +D++R + ++++ +PS++P +K++
Sbjct: 66 KGPTPFPCNTCKICTDIIEGHCTDVFEIDGASNNSVDQIRDLRENVTY-MPSSAP-YKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V+FIF TT++ +P +I SRCQ++ +I I
Sbjct: 124 IIDEVHMLSTAAFNALLKTLEEPPDHVMFIFATTEVHKIPITILSRCQRHDLGRISLPLI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK--RITSSLVNELVG 698
L+ + + E N+E +LDLIA ADGS+RDA ++LD++ K +I V + +G
Sbjct: 184 SGHLQMLCSREGFNIEAQSLDLIAQEADGSIRDALSLLDRILSSAKTLKIEHQTVLDGLG 243
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
++ + L + + A+ ++ + DSG+D
Sbjct: 244 ILDRQILHDTSAAIFKKNGAQLIEIIENINDSGID 278
>gi|228989232|ref|ZP_04149226.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
12442]
gi|228770507|gb|EEM19077.1| DNA polymerase III subunit gamma/tau [Bacillus pseudomycoides DSM
12442]
Length = 562
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N I + + + YLF GPRGTGKT+ AK+F+ +N
Sbjct: 4 QALYRTWRPQNFEDVVGQKHVTKTLQNAILQEKASHAYLFSGPRGTGKTTIAKVFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA R+K
Sbjct: 64 CEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPPQ V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDEVVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ ++M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECMRENDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDML 293
>gi|406577166|ref|ZP_11052783.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD6S]
gi|404460254|gb|EKA06527.1| DNA polymerase III subunits gamma and tau [Streptococcus sp. GMD6S]
Length = 552
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|404405906|ref|ZP_10997490.1| DNA polymerase III subunits gamma and tau [Alistipes sp. JC136]
Length = 368
Score = 196 bits (497), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 116/363 (31%), Positives = 197/363 (54%), Gaps = 22/363 (6%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F ++GQ + +L N I RG++A YLF GPRG GKT+ A+IF+ A+NC++
Sbjct: 8 ARKYRPATFQSVVGQKHITSTLQNAIERGQLAHAYLFCGPRGVGKTTCARIFAKAINCLS 67
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ + C C C F G+S N E+D + ++ +R +++ + +P R+ VF+
Sbjct: 68 PNGAEACNECESCRSFNEGRSLNIHELDAASNNSVEDIRTLIEQVRI-IPQVG-RYSVFI 125
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ Y FN+I+ D V
Sbjct: 126 IDEVHMLSAAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIYDFNRIRVEDSV 185
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGVV 700
LR I+A+E + + ++L+LIA ADG +RDA +M D+ +S G + V + + V+
Sbjct: 186 EYLRYIAAQEGVTADEESLNLIAQKADGGMRDALSMFDKAVSFCGTALDYRNVAQTLNVL 245
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--------- 751
+ + E+ ++ + + + ++ G M+ L + D++
Sbjct: 246 DYDTYFGVTEMLLAGNYVDALVTFDTVLSKGFSGQTFMAGLNRHMRDLLMARQPDTLRLI 305
Query: 752 --TYTIGGRSLTEA---ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPD 806
T T+ R T+A +E L A+ +L+E + ++R SS + L++LG M +
Sbjct: 306 EMTGTLLERYRTQAGACSVEFLFGAISILTELDGKIRQSSNQ-----RLLVELGLMKTAG 360
Query: 807 LTQ 809
L Q
Sbjct: 361 LGQ 363
>gi|417941117|ref|ZP_12584404.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
gi|343388410|gb|EGV00996.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK313]
Length = 551
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 172/294 (58%), Gaps = 4/294 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLV 294
>gi|293365608|ref|ZP_06612317.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
ATCC 35037]
gi|307703557|ref|ZP_07640499.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
ATCC 35037]
gi|291315976|gb|EFE56420.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus oralis
ATCC 35037]
gi|307622964|gb|EFO01959.1| DNA polymerase III, subunits gamma and tau [Streptococcus oralis
ATCC 35037]
Length = 552
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/293 (35%), Positives = 172/293 (58%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +E+++ EPDA+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKEHISSEPDAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLL 293
>gi|332800257|ref|YP_004461756.1| DNA polymerase III subunits gamma and tau [Tepidanaerobacter
acetatoxydans Re1]
gi|332697992|gb|AEE92449.1| DNA polymerase III, subunits gamma and tau [Tepidanaerobacter
acetatoxydans Re1]
Length = 599
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/357 (33%), Positives = 197/357 (55%), Gaps = 21/357 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FDE++GQ +V +L N + G+IA YLF G RGTGKTSTA++F+ ALNC
Sbjct: 5 ALYRKYRPQNFDEIVGQKAIVTTLKNQLKSGKIAHAYLFCGMRGTGKTSTARVFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C SG + +E+D + +G+D +R + + ++ PS R+K+
Sbjct: 65 EKGPIENPCNTCASCKAITSGNMMDVIEMDAASNRGIDDIRDLREKVNFA-PSEG-RYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L ++ + A LK LEEPP+ V+FI TT+ D +P +I SRC ++ F +I +
Sbjct: 123 YIIDEVHMLTTEAFNALLKTLEEPPKYVIFILATTEPDKLPPTILSRCMRFDFKRITTSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I RL+K++ + ++V+ AL IA ++ GS+RDA ++LD+ GK ++ + L+G
Sbjct: 183 IAERLKKVAQDSEIDVDDKALLQIAAHSQGSVRDALSLLDKAMAFGKGKLAYEDILILLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
VS E ++ + + + + E+ G D M L +++ +IG
Sbjct: 243 AVSNEVFYDVSAAVIKGNGTDLLNVVDEVAKQGKDLFRFMDDLLEHFRNLL--MVSIGAD 300
Query: 758 RSLTE------AEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
RSL + A+L E+L + +L +A ++ SS+ A L++L
Sbjct: 301 RSLIDVIDEDYAKLQEISKGYTREKLLSIINVLKDAANDVKWSSQPRIILEAALVKL 357
>gi|254672432|emb|CBA05798.1| DNA polymerase subunits gamma and tau [Neisseria meningitidis
alpha275]
Length = 739
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 167/295 (56%), Gaps = 9/295 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 35 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 94
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R IL++ P+A ++KV+
Sbjct: 95 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYA-PTAG-KYKVY 152
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 153 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 212
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 213 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 272
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDI 748
V ++ L ELL ++ D A +A+E+ D+ + + ++ Q +LI +
Sbjct: 273 VDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQHLALIQAV 327
>gi|339441991|ref|YP_004707996.1| hypothetical protein CXIVA_09270 [Clostridium sp. SY8519]
gi|338901392|dbj|BAK46894.1| hypothetical protein CXIVA_09270 [Clostridium sp. SY8519]
Length = 526
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/368 (32%), Positives = 190/368 (51%), Gaps = 22/368 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F+++ GQ + +L N I GRI YLF G RGTGKT+ AKIF+ A+NC
Sbjct: 5 ALYRKYRPDTFEDVKGQEHITTTLKNQIRAGRIGHAYLFCGTRGTGKTTVAKIFAKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PCG C C G S N ME+D + G++ +R I + ++ P+ +++V
Sbjct: 65 ENPQNGSPCGECPTCRAIADGTSMNVMEIDAASNNGVENIRQIKEEVTYA-PTGG-KYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ+Y F++I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEAHKIPITILSRCQRYDFHRISVDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL--SLLGKRITSSLVNELV 697
I RL ++ AEE VE A+ IA ADGS+RDA ++LDQ +G+ +T V +++
Sbjct: 183 IADRLTELMAEEGTQVEERAIRYIAKAADGSMRDALSLLDQCISFYIGQTLTYENVLDVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQLA 742
G V E +L M D V EL+ G + +V S
Sbjct: 243 GAVDTEVFRKLFLRIMEDDVTGAVAVVEELILQGRELGQFVTDFIWYLRSLLLVRASDQM 302
Query: 743 SLIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
++D+ A + + + E E + +++ SE +R ++++ +++L
Sbjct: 303 EEVLDVSAENLALLRETAEQTEPEVIMRYIRVFSELSADMRYAAQKRVMLEIAIMKLC-- 360
Query: 803 HSPDLTQS 810
P++ Q+
Sbjct: 361 -RPEMEQT 367
>gi|315613323|ref|ZP_07888232.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 49296]
gi|315314558|gb|EFU62601.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sanguinis
ATCC 49296]
Length = 552
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI A + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DITAHIHHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|296116792|ref|ZP_06835398.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
hansenii ATCC 23769]
gi|295976593|gb|EFG83365.1| DNA polymerase III subunits gamma and tau [Gluconacetobacter
hansenii ATCC 23769]
Length = 690
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 17/305 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ+ V+ L N + GR+A ++ G RG GKT+TA+I + ALN
Sbjct: 49 RVLARKYRPTTFDDLIGQDTTVRILRNAFALGRVAHAFMLTGVRGVGKTTTARIIARALN 108
Query: 519 CVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
C D PCG C C ++ + + ME+D ++ G+D VR I+ S
Sbjct: 109 CTGPDGQGGPTADPCGVCPNCVAILADRHPDVMEMDAASRTGVDDVREIID--STRFRPI 166
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R KVF+IDE H+L + A LK LEEPP +V FIF TT++ VP ++ SRCQ +
Sbjct: 167 QGRMKVFIIDEVHMLSRNAFNALLKTLEEPPSQVTFIFATTELRKVPVTVLSRCQTFDLR 226
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG-------- 685
++ + A +++A E + PDAL LIA ADGS+RD ++LDQ G
Sbjct: 227 RVPQDMLAAHFGRVAAAEGVAFAPDALALIARAADGSVRDGLSLLDQAIAQGTLDGEGQG 286
Query: 686 --KRITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
I ++LV+ ++G + +LL+ ++ + + E+ G D V+++ +
Sbjct: 287 DAAPIDATLVSGMLGQADRGMVFDLLDAVLAGRPDQALTITDEVFARGADLGVMLADVLD 346
Query: 744 LIMDI 748
LI +
Sbjct: 347 LIHSV 351
>gi|260102437|ref|ZP_05752674.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
gi|260083757|gb|EEW67877.1| DNA polymerase III [Lactobacillus helveticus DSM 20075]
Length = 595
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 199/372 (53%), Gaps = 16/372 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCIAADKGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKD 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL +IA ADG +RDA ++LDQ LS + + E+
Sbjct: 182 DLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL----IMDIIAGTY 753
G ++E + ++L + + +K A+ + G ++ +L + +M I AG
Sbjct: 242 GFAAKENIEKILLALLEQNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDD 301
Query: 754 TIGGRSLTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G L+E ++++K + L ++A LR ++++ L++ GS
Sbjct: 302 R-QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLRYTNQQQIPLEVFLVEAGSKQEE 360
Query: 806 DLTQSGSSRRQS 817
+ QS + Q+
Sbjct: 361 QVAQSSAGPVQA 372
>gi|404498270|ref|YP_006722376.1| DNA polymerase III subunits gamma and tau [Geobacter
metallireducens GS-15]
gi|418067614|ref|ZP_12704952.1| DNA polymerase III, subunits gamma and tau [Geobacter
metallireducens RCH3]
gi|78195867|gb|ABB33634.1| DNA polymerase III, gamma and tau subunits [Geobacter
metallireducens GS-15]
gi|373558514|gb|EHP84854.1| DNA polymerase III, subunits gamma and tau [Geobacter
metallireducens RCH3]
Length = 582
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 154/261 (59%), Gaps = 9/261 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L GQ V Q+L N I GRIA +LF G RG GKTS+A+I + AL C
Sbjct: 6 LARKWRPQTFSDLTGQEHVSQTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALTCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAGLPSASPRF 577
+PC C C + +G + + +E+DG + G+D +R + +K+L + L R+
Sbjct: 66 QGMSPEPCNVCPACTEITAGTAVDVLEIDGASNTGVDDIRELRENVKYLPSRL-----RY 120
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K+F+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I
Sbjct: 121 KIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPL 180
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
G +V RLR I +E + + +L ++A DGS+RD+ ++LDQ L+ G ++ V L
Sbjct: 181 GKVVGRLRHIVDQEGIAISDASLTMVARKGDGSMRDSLSVLDQVLAFCGDQVRDEEVVSL 240
Query: 697 VGVVSEEKLLELLELAMSSDT 717
+GVV LL+ DT
Sbjct: 241 LGVVDRRLLLDATAAVFGRDT 261
>gi|421478517|ref|ZP_15926268.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
multivorans CF2]
gi|400224601|gb|EJO54823.1| DNA polymerase III, subunit gamma and tau, partial [Burkholderia
multivorans CF2]
Length = 380
Score = 196 bits (497), Expect = 1e-46, Method: Composition-based stats.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQ------------LRLSSERCTWFTATLLQL 799
E L+ +LLS + Q L L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|289523191|ref|ZP_06440045.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
gi|289503734|gb|EFD24898.1| DNA polymerase III, gamma and tau subunit [Anaerobaculum
hydrogeniformans ATCC BAA-1850]
Length = 557
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 177/292 (60%), Gaps = 5/292 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P F +++GQ+ +V+ L +++ +I +LF GPRG GKT+ A+I + ALNC
Sbjct: 4 SLYRKYRPGRFSDVVGQDGIVKILKHSLRSKKIGHAFLFSGPRGCGKTTVARIVAKALNC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C G+S + +E+DG + +G++ +R + + GL S S +KV
Sbjct: 64 PDAREGEPCDSCEVCKTISRGESLDVIEIDGASNRGIEEIRNLKSQI--GLASFSLPYKV 121
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPPQRVVFI TT + VP +I+SRC ++ FN++ D
Sbjct: 122 YIIDEVHMLTDAAFNALLKTLEEPPQRVVFILATTAPEKVPLTIRSRCLRFYFNRLSSVD 181
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
IV RL +++ EE + E +AL +A ADGSLRDA T+L+Q LSL K +T V L G
Sbjct: 182 IVNRLCRVAQEEGFDYEEEALWELARQADGSLRDALTLLEQALSLEEKALTLDSVVLLFG 241
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
S L ++++L M+ D ++ + RE++ G+ L S+ D+ A
Sbjct: 242 -GSRSTLEDMVKL-MALDPSKGYAKMREILKRGLTGERLFEIAFSIFRDMWA 291
>gi|134295858|ref|YP_001119593.1| DNA polymerase III subunits gamma and tau [Burkholderia
vietnamiensis G4]
gi|134139015|gb|ABO54758.1| DNA polymerase III, subunits gamma and tau [Burkholderia
vietnamiensis G4]
Length = 880
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE ++ E AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + D E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGDGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAQTLSPEKVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|448745341|ref|ZP_21727195.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus KT/Y21]
gi|445561334|gb|ELY17543.1| DNA polymerase III subunit gamma/tau [Staphylococcus aureus KT/Y21]
Length = 565
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/348 (31%), Positives = 186/348 (53%), Gaps = 6/348 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P FD+++GQ V ++L N IS+ + + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFDDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ + +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
IV RL+ ++ + + E +AL IA ++G +RDA +++DQ G +T
Sbjct: 180 LDQIVERLKFVADAQQIECEDEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
+ G V +E L L + + D + K+ + + G + L++ + + D I +
Sbjct: 240 VTGSVHDEALDHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSE 299
Query: 755 --IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
R+L EL+ L + L+++ +R S + F L++L
Sbjct: 300 KDTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|410462341|ref|ZP_11315927.1| DNA polymerase III, subunit gamma/tau [Desulfovibrio magneticus
str. Maddingley MBC34]
gi|409984574|gb|EKO40877.1| DNA polymerase III, subunit gamma/tau [Desulfovibrio magneticus
str. Maddingley MBC34]
Length = 651
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ KY+P F ++ GQ+ V + L + RIAP YLF G RG GKT+ A++ + ALNC
Sbjct: 5 SLTAKYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C +G S + +E+D +D R + + + G + R+KV
Sbjct: 65 ETAPTGEPCNVCSQCRQITAGVSPDVIEIDAATHGKVDDARRLKEDV--GYAPLNSRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP RV FI TT+ P +I SRCQ YLF ++ +
Sbjct: 123 FIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+ A L + E + E A+ LIA GS+RD+ ++L Q L+L G +T + ++G
Sbjct: 183 LEAHLASVLEREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELTEADARGVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ +E L+E + D V+ R+++D G+D + +LAS+ ++
Sbjct: 243 LAGQEVFFGLIEAIRAEDGPAVVEILRQVLDKGLDIGFFLRELASMWRNLF 293
>gi|269216238|ref|ZP_06160092.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
gi|269130497|gb|EEZ61575.1| DNA polymerase III, subunit gamma and tau [Slackia exigua ATCC
700122]
Length = 862
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 190/363 (52%), Gaps = 16/363 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FD+++GQ + +++ N + R++ YLF GPRGTGKT+ A++ + AL C
Sbjct: 4 ALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
P G C +C G + E+D ++ G++ VR + P R+K+
Sbjct: 64 EKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRG-RYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVFI TTD VP +I SRCQ++ F+++ + +
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I+ARL + A E + E +AL+L A A G +RDA T L+QL G+ R+T + +++G
Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
+ + +++ D A E +++G D LAS + D+ A T G
Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTDGAL 302
Query: 758 ---RSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
S T +L +RL H L +L + +LR S+ F L ++ S
Sbjct: 303 EPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARPES- 361
Query: 806 DLT 808
DLT
Sbjct: 362 DLT 364
>gi|239907167|ref|YP_002953908.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus
RS-1]
gi|239797033|dbj|BAH76022.1| DNA polymerase III gamma and tau subunit [Desulfovibrio magneticus
RS-1]
Length = 654
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/291 (35%), Positives = 161/291 (55%), Gaps = 3/291 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ KY+P F ++ GQ+ V + L + RIAP YLF G RG GKT+ A++ + ALNC
Sbjct: 5 SLTAKYRPQRFADVAGQDAVKRILSRAAAEDRIAPAYLFSGTRGVGKTTLARVLAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+PC C +C +G S + +E+D +D R + + + G + R+KV
Sbjct: 65 ETAPTGEPCNVCSQCRQITAGVSPDVIEIDAATHGKVDDARRLKEDV--GYAPLNSRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L + + A LK LEEPP RV FI TT+ P +I SRCQ YLF ++ +
Sbjct: 123 FIIDEAHMLTTAAFNALLKTLEEPPGRVTFILATTEPHKFPATIISRCQHYLFKRLAQSE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
+ A L + E + E A+ LIA GS+RD+ ++L Q L+L G +T + ++G
Sbjct: 183 LEAHLSSVLMREAVPYEAKAVSLIARRGAGSVRDSMSLLAQVLALGGAELTEADARGVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
+ +E L+E + D V+ R+++D G+D + +LAS+ ++
Sbjct: 243 LAGQEVFFGLIEAIRAEDGPAVVELLRQVLDKGLDIGFFLRELASMWRNLF 293
>gi|297543594|ref|YP_003675896.1| DNA polymerase III subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296841369|gb|ADH59885.1| DNA polymerase III, subunits gamma and tau [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 516
Score = 196 bits (497), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/357 (33%), Positives = 199/357 (55%), Gaps = 20/357 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+SL +KY+P F E++GQ +V++L N I RI YLF G RGTGKTS AKIF+ A+N
Sbjct: 3 QSLYRKYRPKSFKEVVGQEHIVKTLKNQIKLNRIGHAYLFTGTRGTGKTSIAKIFAKAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +PC C C+ + + + +E+D + ++ VR + + + PS + ++K
Sbjct: 63 CLNNTEGEPCNSCDICHAINNNTTMDVLEIDAASNNSVNDVRELRESVIYA-PSQT-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP V+FI TT+ D +P +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPPSHVIFILATTEPDKLPDTILSRCQRFDFKRIPTR 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
I L +I + + +E L IAL +GS+RDA ++L+Q +S IT V E++
Sbjct: 181 LIAQNLDRICNDSGIKIEDKGLKTIALYGNGSMRDAISLLEQCISYKEGFITYEDVCEML 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
GV ++E L LL+ + D A ++K+ +++ G+D + L ++ D++ Y GG
Sbjct: 241 GVANDEMLFSLLDYINAKDVAASLKQLDKILSYGIDLGNFLKSLTYILRDMVL--YKTGG 298
Query: 758 RSLTE-----AELER----------LKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
L E AE + L +AL+ + +++++ + T T+L+L
Sbjct: 299 EELKEILYSNAETIKEKVQNFGTAFLTNALEKFTNLQREIKYAIAPLTLLEITILRL 355
>gi|423456654|ref|ZP_17433504.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X1-1]
gi|401128741|gb|EJQ36429.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X1-1]
Length = 562
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + + + YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAVG-YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPATIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +++TS V +
Sbjct: 182 DIVERLSTVVTNEGTQVEAEALQIVARAAEGGMRDALSLIDQAISYSDEKVTSEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ L +L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQRYLGDLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDML 293
>gi|402828799|ref|ZP_10877684.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
gi|402285957|gb|EJU34437.1| DNA polymerase III, subunit gamma and tau [Slackia sp. CM382]
Length = 862
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/363 (32%), Positives = 190/363 (52%), Gaps = 16/363 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FD+++GQ + +++ N + R++ YLF GPRGTGKT+ A++ + AL C
Sbjct: 4 ALYRKYRPQTFDDVVGQIHIERTIKNALESDRVSHAYLFCGPRGTGKTTMARLLAKALLC 63
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
P G C +C G + E+D ++ G++ VR + P R+K+
Sbjct: 64 EKGPTPAPDGECEQCLAIAEGTHPDVNEMDAASRTGVENVREEIIGRVQFAPVRG-RYKI 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP VVFI TTD VP +I SRCQ++ F+++ + +
Sbjct: 123 YIIDEVHMLSTAAFNALLKTLEEPPSHVVFILCTTDPHKVPATIHSRCQRFDFHRLANEE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
I+ARL + A E + E +AL+L A A G +RDA T L+QL G+ R+T + +++G
Sbjct: 183 IIARLGAVCASEGVEFEAEALELAAKRAQGGMRDALTTLEQLIAFGEGRVTMQVALDVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG- 757
+ + +++ D A E +++G D LAS + D+ A T G
Sbjct: 243 ALDSNDMTDIVARIARRDAAACFTWVAEYVETGADLAQFARDLASYVRDLYAFILTDGAL 302
Query: 758 ---RSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
S T +L +RL H L +L + +LR S+ F L ++ S
Sbjct: 303 EPRSSATNEQLAAQAGLFGPDRLAHVLSILGDVCAELRSSANPRLSFEIALTRMARPES- 361
Query: 806 DLT 808
DLT
Sbjct: 362 DLT 364
>gi|153006600|ref|YP_001380925.1| DNA polymerase III subunits gamma/tau [Anaeromyxobacter sp.
Fw109-5]
gi|152030173|gb|ABS27941.1| DNA polymerase III, subunits gamma and tau [Anaeromyxobacter sp.
Fw109-5]
Length = 606
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 96/245 (39%), Positives = 149/245 (60%), Gaps = 3/245 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L++KY+P F E+ GQ VV++L N + G++A +LF GPRG GKT+TA++ + A
Sbjct: 2 NYLVLARKYRPQQFGEMSGQQHVVRTLSNALKTGQLAHAFLFTGPRGVGKTTTARLVAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC +PCG C C + G++ + +E+D + G+D VR I++ + A R
Sbjct: 62 LNCEKGPTAEPCGACTPCVEIAEGRAVDVVEIDAASNNGVDNVRDIVEAVK--YRPARDR 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KVFV+DE H+L + + A LK LEEPP+ V F+ TTD+ VP +I SRCQ++ F ++
Sbjct: 120 YKVFVVDEVHMLSTGAFNALLKTLEEPPEHVKFVLATTDVHKVPETILSRCQRFDFRRLT 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNE 695
I +L K++ E + + P AL L+A A+G +RDA ++LDQ+ + G + V E
Sbjct: 180 LQQIADQLAKVAEAEGMRLAPGALALVARQAEGGMRDALSLLDQVRAAAGDAPDEAAVAE 239
Query: 696 LVGVV 700
+G V
Sbjct: 240 ALGAV 244
>gi|421488789|ref|ZP_15936177.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
gi|400368006|gb|EJP21021.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK304]
Length = 551
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L I + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAIEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|221208413|ref|ZP_03581416.1| DNA polymerase III, subunits gamma and tau [Burkholderia
multivorans CGD2]
gi|221171826|gb|EEE04270.1| DNA polymerase III, subunits gamma and tau [Burkholderia
multivorans CGD2]
Length = 387
Score = 195 bits (496), Expect = 1e-46, Method: Composition-based stats.
Identities = 115/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQ------------LRLSSERCTWFTATLLQL 799
E L+ +LLS + Q L L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|205371943|ref|ZP_03224762.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
gi|205372023|ref|ZP_03224841.1| DNA polymerase III subunits gamma and tau [Bacillus coahuilensis
m4-4]
Length = 567
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/360 (31%), Positives = 197/360 (54%), Gaps = 17/360 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V Q+L N + + +I+ YLF GPRGTGKTS AKI A+N
Sbjct: 4 QALYRVWRPQTFEDVVGQQHVTQTLQNALLQDKISHAYLFSGPRGTGKTSAAKILGKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C + G ++ +E+D + G++ +R I + PSA RFK
Sbjct: 64 CERAPIAEPCNECAACKGIMDGSIQDVIEIDAASNNGVEEIRDIRDKVKFA-PSAV-RFK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ V+FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPKHVMFILATTEPHKIPLTIISRCQRFDFKRITPR 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R+ I+ E ++VE AL +IA A+G +RDA ++LDQ +S ++ +
Sbjct: 182 DIVGRMSYIANESGVDVEEQALHVIARAAEGGMRDALSLLDQAISFSDDKVMVGDALTVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG- 756
G V++ L +L + + + ++ EL++ G DP L+ L D++
Sbjct: 242 GAVAQVHLNQLAKAIHEKEASNALQSLEELVNQGKDPSRLVEDLIMYFRDMLLFKTAPSL 301
Query: 757 ------------GRSLTEA-ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
+SL E+ + E++ + +L+ A++++R ++ + +L++L ++
Sbjct: 302 EQSLERVLLDEQFQSLAESIQPEQIYEYIDILNHAQQEMRFTNHTKIYLEVSLVKLSQLN 361
>gi|373469979|ref|ZP_09561135.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371763434|gb|EHO51910.1| DNA polymerase III, subunit gamma and tau [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 386
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 151/241 (62%), Gaps = 4/241 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P FDE++GQ + ++L N + GRI+ YLF G RGTGKTS AKI + ALNC
Sbjct: 5 ALYRKFRPSNFDEVVGQEAITRTLKNQLKTGRISHAYLFCGTRGTGKTSIAKIMARALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ PC C C ++ S N +E+D + G+D +R I + + P R+KV
Sbjct: 65 EHPTEAGPCNECPTCKSILNETSINVVEIDAASNNGVDNIRDIKEQVQ--YPPTFGRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
F+IDE H+L S + A LK LEEPPQ V+FI TT++ +P ++ SRCQ+Y F +I
Sbjct: 123 FIIDEVHMLSSGAFNALLKTLEEPPQYVIFILATTEVHKIPITVLSRCQRYDFKRISVDT 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNELV 697
I RL+K+ E +++E A+D IA ADG++RDA ++LD+ +S L ++IT V +++
Sbjct: 183 ISQRLKKLCKAEGVDIEDRAVDYIAKAADGAMRDALSLLDECISFLQNEKITFDAVLDIL 242
Query: 698 G 698
G
Sbjct: 243 G 243
>gi|346314840|ref|ZP_08856357.1| hypothetical protein HMPREF9022_02014 [Erysipelotrichaceae
bacterium 2_2_44A]
gi|345905778|gb|EGX75515.1| hypothetical protein HMPREF9022_02014 [Erysipelotrichaceae
bacterium 2_2_44A]
Length = 601
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 120/388 (30%), Positives = 201/388 (51%), Gaps = 28/388 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ VVQ+L + + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 KALYRTYRPNSFDEVAGQKHVVQTLQHAVEQHKIAHAYLFCGPRGTGKTSIAKIFAKTIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + KPC C C G + +E+D + G++ VR +++ + ++K
Sbjct: 64 CENPNH-KPCLECDNCRAVQDGSHPDIIEIDAASNNGVEEVRTLIEKVKYA--PLKGKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
+++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F K+
Sbjct: 121 IYIIDEVHMMSTGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPRD 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+IV R+ I E + E + + +IA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 181 EIVQRIHTILEREQITCEEEVIRIIAQLADGGLRDALSILDQCIAYAQNHIQVHHINEIY 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT--- 754
G+ + ++ L+L D + +L++ G+D L L ++ + I YT
Sbjct: 241 GITTIQEKLDLYRYIYGKDAVSLLNAIDQLIEKGIDIKRLTVDLIEILKESIIFEYTKDA 300
Query: 755 --------------IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
I G+S+ ER + + LL E + R ++ ++F LLQ+
Sbjct: 301 SLLHILNSEEVLTLIDGKSIA----ERFQ-MIHLLMETYDKYRSAANAGSYFEVCLLQML 355
Query: 801 SMHSPDLTQSGSSRRQSSRTTEEDPSST 828
+ + +T +S + E+ P ST
Sbjct: 356 DVKATVVT--TTSHPLETPRQEQKPVST 381
>gi|416958413|ref|ZP_11936063.1| DNA polymerase III subunits gamma and tau, partial [Burkholderia
sp. TJI49]
gi|325522361|gb|EGD00963.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. TJI49]
Length = 381
Score = 195 bits (496), Expect = 1e-46, Method: Composition-based stats.
Identities = 115/353 (32%), Positives = 190/353 (53%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTEAAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGSGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|229083335|ref|ZP_04215695.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
gi|228699982|gb|EEL52607.1| DNA polymerase III subunit gamma/tau [Bacillus cereus Rock3-44]
Length = 562
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/292 (35%), Positives = 168/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + + + YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQNFEDVVGQKHVTKTLQNALLQEKASHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA R+K
Sbjct: 64 CEHAPVAEPCNECPACLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-RYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPPQ V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPQHVIFILATTEPHKIPPTIISRCQRFEFRKISVH 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLATVVTNEGTKVEDEALQIVARAAEGGMRDALSLIDQAISYSDEIVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ ++M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDDMMSKGKDPVRFMEDFIYYYRDML 293
>gi|254248057|ref|ZP_04941378.1| DNA polymerase III, subunits gamma and tau [Burkholderia
cenocepacia PC184]
gi|124872833|gb|EAY64549.1| DNA polymerase III, subunits gamma and tau [Burkholderia
cenocepacia PC184]
Length = 346
Score = 195 bits (496), Expect = 1e-46, Method: Composition-based stats.
Identities = 112/338 (33%), Positives = 186/338 (55%), Gaps = 8/338 (2%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEEQITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ +++ E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAANGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFAPGSVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQL--RLSSERCT---WF 792
E L+ + LS + L ++++ CT WF
Sbjct: 304 DEWPEAADLRRFAETLSPEQVLLFYQIATVVCTSSAWF 341
>gi|307706413|ref|ZP_07643223.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK321]
gi|307618200|gb|EFN97357.1| DNA polymerase III, subunits gamma and tau [Streptococcus mitis
SK321]
Length = 551
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI +R I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTTISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G +S L + + D + + L D+G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLL 293
>gi|374572304|ref|ZP_09645400.1| DNA polymerase III, subunit gamma/tau [Bradyrhizobium sp. WSM471]
gi|374420625|gb|EHR00158.1| DNA polymerase III, subunit gamma/tau [Bradyrhizobium sp. WSM471]
Length = 605
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 172/296 (58%), Gaps = 13/296 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ VV+++ N GRI ++ G RG GKT+TA+I + ALN
Sbjct: 21 RVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALN 80
Query: 519 CVATD--------QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
D Q G C + + + +E+D + G+D VR I + S
Sbjct: 81 YEMPDGSVKGPTVQMPTLGV--HCQAIMESRHMDVLEMDAASHTGVDDVRQI--NDSVRY 136
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
AS R+KV++IDE H+L + + AFLK LEEPP+ F+F TT+I VP ++ SRCQ++
Sbjct: 137 APASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRF 196
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRIT 689
+++ ++ L I+A+EN+ +EP+AL +IA A+GS+RD+ ++LDQ ++ +
Sbjct: 197 DLRRVEADVLMKHLANIAAKENVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGTVK 256
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+ V +++G+ ++++L + D A + R+ D G DP+V++S LA +
Sbjct: 257 ADAVRQMLGLADRTRVIDLFDSLARGDIASAFREFRDQYDVGADPIVVLSDLAEFV 312
>gi|212694010|ref|ZP_03302138.1| hypothetical protein BACDOR_03536 [Bacteroides dorei DSM 17855]
gi|212663542|gb|EEB24116.1| DNA polymerase III, subunit gamma and tau [Bacteroides dorei DSM
17855]
Length = 637
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 117/382 (30%), Positives = 197/382 (51%), Gaps = 18/382 (4%)
Query: 449 EEEEGVLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTS 508
E+ ++EN ++KY+P F+ ++GQ + +L N I+ G++A YLF GPRG GKT+
Sbjct: 29 EKRTPLMENYIVSARKYRPATFESVVGQRALTITLKNAIATGKLAHAYLFCGPRGVGKTT 88
Query: 509 TAKIFSAALNC-VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLS 567
A+IF+ +NC T + + C C C F +S N E+D + ++ +R +++ +
Sbjct: 89 CARIFAKTINCQTPTAEGEACNQCESCLAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR 148
Query: 568 AGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRC 627
+P ++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRC
Sbjct: 149 --IPPQIGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRC 206
Query: 628 QKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGK 686
Q Y FN+I D + L+ ++ E++N EP+AL +IA ADG +RDA ++ DQ +S G
Sbjct: 207 QIYDFNRIGIKDTIDHLQYVAKLEHINAEPEALTVIAQKADGGMRDALSIFDQVVSFTGG 266
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
IT V E + V+ E +L L + + E++ +++ G D ++ L+S
Sbjct: 267 NITYKSVIENLNVLDYEYYFKLTNLLLENKVPESMLLFNDVLKKGFDGSHFITGLSSHFR 326
Query: 747 DII--------------AGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWF 792
D++ AG + + + L A+KL ++ + R S +
Sbjct: 327 DLLVSKDPSTLQLLEVGAGIRDRYKEQAQKCDQKFLYRAMKLCNDCDLNYRASKNKRLLV 386
Query: 793 TATLLQLGSMHSPDLTQSGSSR 814
TL+Q + PD + R
Sbjct: 387 ELTLIQCAQLTLPDADDASGGR 408
>gi|407796829|ref|ZP_11143780.1| DNA polymerase III subunit gamma/tau [Salimicrobium sp. MJ3]
gi|407018727|gb|EKE31448.1| DNA polymerase III subunit gamma/tau [Salimicrobium sp. MJ3]
Length = 563
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 110/361 (30%), Positives = 197/361 (54%), Gaps = 17/361 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ + ++L N I++ + + YLF GPRGTGKTS AKIF+ +N
Sbjct: 4 QALYRVWRPTLFRDVVGQTHITRTLQNAIAQQKFSHAYLFSGPRGTGKTSAAKIFAKTVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G++++R I + S S +K
Sbjct: 64 CEQGPTKEPCNACSACLGIQDGSISDVIEIDAASNNGVEQIRDIRDKVKYAPTSVS--YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP VVFI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPSHVVFILATTEPHKIPLTIISRCQRFDFKRISQT 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+V R+ I+ EE+L V+ +AL+++AL+A+G +RDA ++LDQ +S + + V +
Sbjct: 182 AMVERMASITEEEDLAVDREALEIVALSAEGGMRDALSLLDQAISYSEDAVGTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA------- 750
G +S+++L LL + + E ++ L+ G DP + L + D++
Sbjct: 242 GSISQQQLAALLRYVHAGEVKEALETVDALIQEGKDPGRFVFDLIYYLRDLLMYKSAPGL 301
Query: 751 ------GTYTIGGRSLT-EAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
G R+L+ E + E ++ A++ L++ +++++ ++ + LL +
Sbjct: 302 EQHLERAVPDEGFRALSGELQPEWIQGAIRSLNQCQQEMKWTTSPKVFIEIALLNIADQK 361
Query: 804 S 804
S
Sbjct: 362 S 362
>gi|421862793|ref|ZP_16294497.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309379703|emb|CBX21692.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 707
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/360 (30%), Positives = 189/360 (52%), Gaps = 31/360 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTSQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDIIAG-- 751
V ++ L ELL ++ D A +A+E+ D+ + + ++ Q +LI + +
Sbjct: 244 VDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQHLALIQAVPSALA 303
Query: 752 ------------TYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
TI G E+++ ++ ++ L L+ + F TLL++
Sbjct: 304 HDDPDSDILHRLAQTISG--------EQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRM 355
>gi|310819971|ref|YP_003952329.1| DNA polymerase III subunits gamma and tau [Stigmatella aurantiaca
DW4/3-1]
gi|309393043|gb|ADO70502.1| DNA polymerase III, subunits gamma and tau [Stigmatella aurantiaca
DW4/3-1]
Length = 404
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/283 (36%), Positives = 162/283 (57%), Gaps = 3/283 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P FD++ GQ +V+++ N I R+A YLF GPRG GKT+ A++ + ALNC
Sbjct: 6 LARKWRPQTFDDMTGQEHIVRTIANAIKMDRVAHAYLFCGPRGVGKTTAARLLAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG CR C + SG S + E+DG + G++ VR I ++ + LP R K++
Sbjct: 66 QGPTASPCGTCRACTEITSGTSVDVAEIDGASNNGVENVREIREN-AKYLPQRD-RHKIY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP V FIF TT+ +P +I SRCQ++ F +I +
Sbjct: 124 IIDEVHMLSGAAFNALLKTLEEPPGHVKFIFATTEAHKLPDTILSRCQRHNFRRIPAARM 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ RL++I E + +L L+ ++G +RDA ++LDQ L+ G + T V E +G
Sbjct: 184 LQRLKQICEAEGAGISDRSLSLVVRQSEGGMRDALSLLDQVLASCGAQPTDESVAEALGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
+ + + E + D + ++R E + G+D L +LA
Sbjct: 244 IDRTVVQDFAEALVRKDARKVLERVEETFNRGLDLKRLAEELA 286
>gi|241889703|ref|ZP_04777001.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
10379]
gi|241863325|gb|EER67709.1| DNA polymerase III subunit gamma/tau [Gemella haemolysans ATCC
10379]
Length = 569
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 119/382 (31%), Positives = 204/382 (53%), Gaps = 35/382 (9%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
++L +KY+P F++++GQN +V L N I + +I+ YLF G RGTGKTS AKIF+ +
Sbjct: 2 FQALYRKYRPQTFNDIVGQNHIVSVLKNAIDKDQISHAYLFYGSRGTGKTSIAKIFANEV 61
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
N N+ ++ + +E+D + G+D VR I K LP+ ++
Sbjct: 62 NG---------------NEIYQKENVDIIEIDAASNNGVDEVRDI-KEAIKFLPTEG-KY 104
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP V+FI TT+I +P +I SRCQ++ F +
Sbjct: 105 KVYIIDEVHMLTTAAFNALLKTLEEPPAHVIFILATTEIHKIPATILSRCQRFEFKNLSQ 164
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
++ RL+ I+ EENL +E A++ IA A G LRDA ++LDQ+S + IT + + E+
Sbjct: 165 EQLIDRLKYIAKEENLVIEEAAIEKIATLAKGGLRDAISILDQVSNYAEEITLNHILEVT 224
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA------- 750
+SE+ +LE + D +++ + E + D +L++ L ++ DI+
Sbjct: 225 SSISEDDILEFYRGLLQGDVTKSLLKYNEFVAQAKDTKLLLNDLINVTRDIVVYKNLKDT 284
Query: 751 --GTYTIGGRSLTEAE---LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL-----G 800
Y + + +TE + + ++ LS+ E+ +R S+E ++ ++++ G
Sbjct: 285 KHTAYNV-EKIVTEIDSVSFDYFYKIIEYLSQTEQHIRFSTEYMSYMQICIVKICSKEEG 343
Query: 801 SMHSPDLTQSGSSRRQSSRTTE 822
+ SG + SSR E
Sbjct: 344 INQNNSTIGSGQNSMTSSRNIE 365
>gi|417794637|ref|ZP_12441882.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK255]
gi|334268251|gb|EGL86694.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK255]
Length = 551
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|149279562|ref|ZP_01885691.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
gi|149229598|gb|EDM34988.1| DNA polymerase III, tau and gamma subunits [Pedobacter sp. BAL39]
Length = 624
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 174/299 (58%), Gaps = 4/299 (1%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P F+ ++GQ + +L N I ++A +LF GPRG GKT+ A+I +
Sbjct: 1 MENFIVSARKYRPATFETVVGQQHITGTLKNAIRNNQLAQAFLFCGPRGVGKTTCARILA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC T + + CG C C F +G S NF E+D + +D +R ++ + +P
Sbjct: 61 KTINCTNLTAEQEACGTCESCISFQTGHSFNFHELDAASNNSVDDIRSLIDQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
+ ++K+++IDE H+L + + AFLK LEEPP +FI TT+ + +I SRCQ + FN
Sbjct: 119 AGKYKIYIIDEVHMLSANAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSL 692
+I+ DI + L +I+ EN++VE D L +IA ADG LRDA +M DQ+ S K +T
Sbjct: 179 RIQVDDISSHLNRIAIRENISVEADGLHIIAQKADGGLRDALSMFDQIVSYTNKNLTYKS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG 751
V + + ++ + +L ++D + ++ E++++G D ++ LAS + +++
Sbjct: 239 VIDNLNILDYDYYFKLTTFLTAADVSNSLVLFDEILNNGFDGNNFINGLASHLRNLLVA 297
>gi|403514389|ref|YP_006655209.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
gi|403079827|gb|AFR21405.1| DNA polymerase III subunits gamma and tau [Lactobacillus helveticus
R0052]
Length = 595
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/373 (32%), Positives = 199/373 (53%), Gaps = 16/373 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD +IGQ + +L N I RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDSVIGQESITDTLKNAIKRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + ME+D + G+D +R I + P+ ++K
Sbjct: 64 CTNLQDGEPCNECANCIAAYKGSMPDIMEIDAASNNGVDEIREIRDKVKYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ VVFI TT++ VP +I SR Q+Y F +I
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPEHVVFILATTELQKVPATIISRTQRYNFKRISKE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
D+ R++ I +EN+ E AL +IA ADG +RDA ++LDQ LS + + E+
Sbjct: 182 DLEKRMKYILDQENIKYEDKALAVIAQVADGGMRDALSILDQLLSYEKESVNYQDALEIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL----IMDIIAGTY 753
G ++E + ++L + + +K A+ + G ++ +L + +M I AG
Sbjct: 242 GFAAKENIEKILLALLEKNPESALKLAQTELTQGASSKNILDELIDMATKSLMLIKAGDD 301
Query: 754 TIGGRSLTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
G L+E ++++K + L ++A LR ++++ L++ GS
Sbjct: 302 R-QGTFLSEDFVQKVKDIPTKIFYRLITLANKALNDLRYTNQQQIPLEVFLVEAGSKQEE 360
Query: 806 DLTQSGSSRRQSS 818
QS + Q++
Sbjct: 361 QAAQSSVAPVQAA 373
>gi|386398896|ref|ZP_10083674.1| DNA polymerase III, subunit gamma/tau [Bradyrhizobium sp. WSM1253]
gi|385739522|gb|EIG59718.1| DNA polymerase III, subunit gamma/tau [Bradyrhizobium sp. WSM1253]
Length = 605
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/296 (35%), Positives = 172/296 (58%), Gaps = 13/296 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ VV+++ N GRI ++ G RG GKT+TA+I + ALN
Sbjct: 21 RVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALN 80
Query: 519 CVATD--------QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
D Q G C + + + +E+D + G+D VR I + S
Sbjct: 81 YEMPDGSVKGPTVQMPTLGV--HCQAIMESRHMDVLEMDAASHTGVDDVRQI--NDSVRY 136
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
AS R+KV++IDE H+L + + AFLK LEEPP+ F+F TT+I VP ++ SRCQ++
Sbjct: 137 APASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRF 196
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRIT 689
+++ ++ L I+A+EN+ +EP+AL +IA A+GS+RD+ ++LDQ ++ +
Sbjct: 197 DLRRVEADVLMKHLANIAAKENVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGTVK 256
Query: 690 SSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+ V +++G+ ++++L + D A + R+ D G DP+V++S LA +
Sbjct: 257 ADAVRQMLGLADRTRVIDLFDSLARGDIASAFREFRDQYDVGADPIVVLSDLAEFV 312
>gi|189462594|ref|ZP_03011379.1| hypothetical protein BACCOP_03284 [Bacteroides coprocola DSM 17136]
gi|189430755|gb|EDU99739.1| DNA polymerase III, subunit gamma and tau [Bacteroides coprocola
DSM 17136]
Length = 623
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/364 (31%), Positives = 192/364 (52%), Gaps = 18/364 (4%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN ++KY+P FD ++GQ + +L N I+ ++A YLF GPRG GKT+ A+IF+
Sbjct: 1 MENYIVSARKYRPATFDTVVGQRALTTTLKNAIANQKLAHAYLFCGPRGVGKTTCARIFA 60
Query: 515 AALNCV-ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
+NC+ T + C C C F +S N E+D + ++ +R +++ + +P
Sbjct: 61 KTINCLHPTADGEACNECESCRAFNEQRSYNIHELDAASNNSVEDIRSLIEQVR--IPPQ 118
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
++KV++IDE H+L + AFLK LEEPP +FI TT+ + +I SRCQ Y FN
Sbjct: 119 IGKYKVYIIDEVHMLSQAAFNAFLKTLEEPPHHAIFILATTEKHKILPTILSRCQIYDFN 178
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSL 692
+I D V L ++ +E++ EP+AL++IA ADG +RDA ++ DQ +S IT
Sbjct: 179 RISVNDTVEHLENVARKEHIEAEPEALNVIAQKADGGMRDALSIFDQVVSFTNGHITYQS 238
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG- 751
V E + V+ E +L + + + ++ + E++ G D ++ L S D++
Sbjct: 239 VIENLNVLDYEYYFKLTDAFLENRVSDCLLTFNEVLKKGFDGNHFITGLTSHFRDLLVSR 298
Query: 752 ------TYTIGG--RSLTEAELER-----LKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
+G R +A+ ++ L A+KL ++ + R+S + TL+Q
Sbjct: 299 DDETLQLLEVGASIRDRYQAQAQKCSPQFLYKAMKLCNDCDLNYRVSKNKRLLVELTLIQ 358
Query: 799 LGSM 802
L +
Sbjct: 359 LAQL 362
>gi|269837957|ref|YP_003320185.1| DNA polymerase III subunits gamma and tau [Sphaerobacter
thermophilus DSM 20745]
gi|269787220|gb|ACZ39363.1| DNA polymerase III, subunits gamma and tau [Sphaerobacter
thermophilus DSM 20745]
Length = 589
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 170/303 (56%), Gaps = 17/303 (5%)
Query: 459 RSLSQKYKPIFF--DELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
+SL +KY+P F E +GQ + ++L N I R+A YLF GPRGTGKTSTA++ + A
Sbjct: 16 QSLYRKYRPRSFAPGEFVGQEHIARTLRNAIVLDRVAHAYLFCGPRGTGKTSTARLLAKA 75
Query: 517 LNCVATD-QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYI---LKHLSAGLPS 572
+NC+A D + +PC C C +G + + +E+D + +G+D +R + +K+ L
Sbjct: 76 VNCLAPDPEARPCNACEACEAINAGTAVDIIEIDAASNRGVDDIRDLREKVKYAPTQL-- 133
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R K ++IDE H L + AFLK LEEPP V F+ TT+ D +P +I SRCQ++ F
Sbjct: 134 ---RVKFYIIDEAHQLTRDAFNAFLKTLEEPPGHVKFVLATTEPDKLPDTIASRCQRFDF 190
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR----- 687
+ D+V LR + E + E +AL LIA A GS+RDA +L+QL+L G+
Sbjct: 191 RRFALSDVVEHLRAVCEREGMEAEDEALRLIARQATGSMRDALGLLEQLALFGETVDGKL 250
Query: 688 -ITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
IT+ V + G+ ++L+ L++ D ++ E +SG D L QL + +
Sbjct: 251 VITADAVRRVTGMSRSDRLVALVDALAKKDAGAGLRVIAEATESGEDIHQLNRQLVAYLR 310
Query: 747 DII 749
++
Sbjct: 311 TLL 313
>gi|253698849|ref|YP_003020038.1| DNA polymerase III subunits gamma/tau [Geobacter sp. M21]
gi|251773699|gb|ACT16280.1| DNA polymerase III, subunits gamma and tau [Geobacter sp. M21]
Length = 579
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/248 (41%), Positives = 154/248 (62%), Gaps = 3/248 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ V Q+L N I GR+A +LF G RG GKTS+A+I + ALNC
Sbjct: 6 LARKWRPQTFSDLVGQEHVSQTLKNAIDGGRVAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PC C C + G S + E+DG + G+D +R + ++ LPS S R+K+F
Sbjct: 66 SGLTVEPCNTCSTCLEITEGNSVDVFEIDGASNTGVDDIRELRDNIKY-LPSRS-RYKIF 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FIF TT+ VP +I SRCQ++ F +I I
Sbjct: 124 IIDEVHMLTTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFKRIALPRI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+RLR I +E + V +AL ++A DGS+RD+ + LDQ L+ G ++ + V L+GV
Sbjct: 184 VSRLRYIVDQEGVQVSDEALAVVARKGDGSMRDSLSTLDQVLAFCGNQVADADVAALLGV 243
Query: 700 VSEEKLLE 707
V +++
Sbjct: 244 VDRRLIMD 251
>gi|167562528|ref|ZP_02355444.1| DNA polymerase III subunits gamma and tau [Burkholderia
oklahomensis EO147]
Length = 356
Score = 195 bits (496), Expect = 1e-46, Method: Composition-based stats.
Identities = 113/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEEEIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +L+S + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFSELMSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|416203321|ref|ZP_11620049.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
961-5945]
gi|325142631|gb|EGC65022.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
961-5945]
Length = 709
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 157/273 (57%), Gaps = 3/273 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGV 732
V ++ L ELL ++ D A +ARE+ V
Sbjct: 244 VDKQYLYELLTGIINQDGAALTAKAREMAACAV 276
>gi|225620830|ref|YP_002722088.1| DNA polymerase III subunit gamma and tau [Brachyspira
hyodysenteriae WA1]
gi|225215650|gb|ACN84384.1| DNA polymerase III, gamma and tau subunits [Brachyspira
hyodysenteriae WA1]
Length = 527
Score = 195 bits (496), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 118/362 (32%), Positives = 202/362 (55%), Gaps = 20/362 (5%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
EN + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 ENYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ + V +I+SRCQ+Y F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEAERVLPTIRSRCQQYTFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS+
Sbjct: 181 GIEDLEKILKGILDKENIKYDEEAIFLIAKQARGSVRDSETILEKMIAYTTDKKYITSAD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
VN +VG + + ++ + D + + ++L + VDP ++ + +++ I
Sbjct: 241 VNAVVGGNNFSFVKGFFDIMIEGDKRKYFEFVKKLFEEAVDPRTFINSIIEYIRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTATLL 797
+G I +TE E + LK L + E+++R +S T F +L
Sbjct: 301 SGIDDIKLLEITENERDDLKTFANHYNDDEIERILDYILSVEERIRSASNTRTIFEMRML 360
Query: 798 QL 799
L
Sbjct: 361 LL 362
>gi|451940203|ref|YP_007460841.1| DNA polymerase III subunit gamma/tau [Bartonella australis
Aust/NH1]
gi|451899590|gb|AGF74053.1| DNA polymerase III subunit gamma/tau [Bartonella australis
Aust/NH1]
Length = 642
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 168/291 (57%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I + ALN
Sbjct: 11 RVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARILARALN 70
Query: 519 CVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C I G + +E+D + G+D +R I++ + SA
Sbjct: 71 YKTNDIDRPTTTFSTIGEHCAQIIKGCHIDVVEIDAASHTGIDDIREIIEQIRYRPVSA- 129
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+K+++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ++ +
Sbjct: 130 -RYKIYIIDEVHMLSTQAFNGLLKTLEEPPPHVKFIFATTEIRKVPVTILSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLV 693
I+ +VA LRKI+ E + E AL +IA ++GS RDA ++ DQ +S ++++ V
Sbjct: 189 IESEILVAHLRKIAEHEKVEAEDQALSIIARASEGSARDALSIFDQAISHSNGKVSAISV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ + ++++L E M D + R ++G DP +++++LA
Sbjct: 249 RTMLGLSDQTRIIDLFEFIMKGDIVGALNELRSQYNAGADPFIMLTELADF 299
>gi|163119173|ref|YP_077305.2| DNA polymerase III subunits gamma/tau [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|319648542|ref|ZP_08002757.1| DnaX protein [Bacillus sp. BT1B_CT2]
gi|404487384|ref|YP_006711490.1| DNA polymerase III subunits gamma and tau [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346379|gb|AAU39013.1| DNA polymerase 3 gamma/tau subunit DnaX [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|145902676|gb|AAU21667.2| DNA polymerase III (gamma and tau subunits) [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|317389390|gb|EFV70202.1| DnaX protein [Bacillus sp. BT1B_CT2]
Length = 566
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AK+F+ A+N
Sbjct: 4 QALYRVFRPQLFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKLFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C ++PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CERAPVSEPCNECSACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV R++KI E L V+ ALD+IA ADG +RDA ++LDQ +S G+ +T +
Sbjct: 182 AIVGRMKKIVEAEQLKVQDGALDIIASAADGGMRDALSLLDQAVSFSGEELTVDDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ + +L + + ++ EL+ G DP L+ + D++
Sbjct: 242 GAVSQHYIGKLASTLHEKNVSGALETLNELLQQGKDPAKLIEDMIFYFRDML 293
>gi|423479653|ref|ZP_17456368.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-1]
gi|402425015|gb|EJV57174.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG6X1-1]
Length = 562
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|423399576|ref|ZP_17376771.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-1]
gi|423410260|ref|ZP_17387407.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-3]
gi|401643401|gb|EJS61099.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-1]
gi|401648850|gb|EJS66443.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-3]
Length = 562
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 166/292 (56%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPAHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDML 293
>gi|383648209|ref|ZP_09958615.1| DNA polymerase III gamma and tau subunit [Sphingomonas elodea ATCC
31461]
Length = 552
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 174/321 (54%), Gaps = 14/321 (4%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
E R L++KY+P F LIGQ+ +V +L N I R R+A +L G RG GKTSTA++ +
Sbjct: 18 EAYRVLARKYRPQTFSALIGQDAMVTTLGNAIRRDRLAHAFLLTGVRGVGKTSTARLIAK 77
Query: 516 ALNCVATD-----QTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGL 570
ALNC+ D PCG C C G+ + +E+D + G+D VR I++ ++
Sbjct: 78 ALNCIGPDGQGGPTIDPCGVCEPCRAIAEGRHIDVIEMDAASHTGVDDVREIIE--ASRY 135
Query: 571 PSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKY 630
+ S R+K+++IDE H+L + A LK LEEPP V F+F TT+++ VP ++ SRCQ++
Sbjct: 136 AAVSARYKIYIIDEVHMLSKNAFNALLKTLEEPPGHVKFLFATTEVNKVPVTVLSRCQRF 195
Query: 631 LFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ----LSLLGK 686
+I + ++ E++ EP+AL L+A A+GS RD ++LDQ L G+
Sbjct: 196 DLRRIPAELLAEHFARVCEAEHVEAEPEALALVARAAEGSARDGLSILDQAIAHAGLEGE 255
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
+ + V +++G+ L + + + + R D GVDP+ ++ L +
Sbjct: 256 GVKAEAVRQMLGLSDRGANRALFGMLVEGQAQQALAGLRAQYDLGVDPLAVLRALLETVH 315
Query: 747 DII---AGTYTIGGRSLTEAE 764
+ GT+ + G+S E E
Sbjct: 316 GVTLVKLGTHRLSGQSTEERE 336
>gi|385340333|ref|YP_005894205.1| DNA polymerase III subunits gamma and tau [Neisseria meningitidis
G2136]
gi|433467586|ref|ZP_20425040.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
87255]
gi|325198577|gb|ADY94033.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
G2136]
gi|432202420|gb|ELK58484.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
87255]
Length = 710
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 167/295 (56%), Gaps = 9/295 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R IL++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREILENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDI 748
V ++ L ELL ++ D A +A+E+ D+ + + ++ Q +LI +
Sbjct: 244 VDKQYLYELLTGIINQDGAALTAKAQEMAACAVGFDNALGELAILLQHLALIQAV 298
>gi|297538152|ref|YP_003673921.1| DNA polymerase III subunits gamma and tau [Methylotenera versatilis
301]
gi|297257499|gb|ADI29344.1| DNA polymerase III, subunits gamma and tau [Methylotenera
versatilis 301]
Length = 573
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 103/289 (35%), Positives = 167/289 (57%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F+ L+GQ+ VV++L N + + R+ YLF G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKSFETLVGQDHVVRALTNALEQNRLHHAYLFTGTRGVGKTTVARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
KPCG C C + G+ + +EVD + +D +R +L + A S RFKV+
Sbjct: 66 KGITAKPCGVCDACTEIDRGRFVDLIEVDAASNTQVDAMRDLLDN--AQYAPTSGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP V FI TTD VP ++ SRC ++ ++ I
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPAHVKFILATTDPQKVPVTVLSRCLQFNLRQMAGTSI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ I +EN+ EP AL LIA A GS+RDA ++ DQ ++ G+ + S V ++G
Sbjct: 184 IEHLQNILGQENIPFEPTALHLIARAAAGSMRDALSLTDQAIAYGGQTVNESEVRAMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ + L +L+ +++D A + +A+ + + + V ++ LA L+ I
Sbjct: 244 IDQSYLYQLINALLANDGASIIAQAKSMEERSLSFEVALNDLAQLLHQI 292
>gi|238563644|ref|ZP_00438506.2| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8
horse 4]
gi|238520253|gb|EEP83715.1| DNA polymerase III, subunits gamma and tau [Burkholderia mallei GB8
horse 4]
Length = 449
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 114/352 (32%), Positives = 189/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|150021275|ref|YP_001306629.1| DNA polymerase III subunits gamma and tau [Thermosipho
melanesiensis BI429]
gi|149793796|gb|ABR31244.1| DNA polymerase III, subunits gamma and tau [Thermosipho
melanesiensis BI429]
Length = 460
Score = 195 bits (495), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 122/376 (32%), Positives = 203/376 (53%), Gaps = 21/376 (5%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
+ +L +KY+P F EL+GQ+ V + VN++ I+ Y+F GPRGTGKT+ A+I + +L
Sbjct: 1 METLYRKYRPKKFLELVGQSHVKKLFVNSLKNKEISHAYIFAGPRGTGKTTVARILAKSL 60
Query: 518 NCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
NC + +PC C C G + +E+D + +G+D +R I + + +A ++
Sbjct: 61 NCENPQEIEPCNMCNACISIDKGNFMDVLELDAASNRGIDEIRKIRE--TVNYHTAQGKY 118
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
KV++IDE H+L + + A LK LEEPP VVFI TT+ + +P++I SRCQ F I +
Sbjct: 119 KVYIIDEAHMLTKEAFNALLKTLEEPPSNVVFILATTNPEKIPQTIISRCQVIDFKNISN 178
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNEL 696
DI+ RL + E + + +A+ I+ A+G LRDA T+L+Q ++ GK I V E
Sbjct: 179 KDIIKRLEFVCENEGIKISHEAIVEISKRANGGLRDALTILEQVINSAGKDIKIEDVRET 238
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
+G++ + + +LLE ++D T+K E+ SG + + + Q ++
Sbjct: 239 LGLIPDTIIEKLLENLENNDIKSTLKLIDEVYYSGKNLEIFLYQTIEKLI---------- 288
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLTQSGSSRRQ 816
SL E H LK +SE K ++ S E+ TL++LG + S TQ + +
Sbjct: 289 --SLVEENNHNYIHFLKPISEILKDIKYSEEKI-----TLVKLGFI-SLFATQPIYIQPK 340
Query: 817 SSRTTEEDPSSTSREA 832
+ ++ D + R+A
Sbjct: 341 NKEISQNDSKNAERKA 356
>gi|387902371|ref|YP_006332710.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. KJ006]
gi|387577263|gb|AFJ85979.1| DNA polymerase III subunits gamma and tau [Burkholderia sp. KJ006]
Length = 861
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE ++ E AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEEQISFEQQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + D E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGDGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAQTLSPEKVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|401683494|ref|ZP_10815380.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. BS35b]
gi|418975716|ref|ZP_13523614.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK1074]
gi|383347162|gb|EID25163.1| DNA polymerase III, subunit gamma and tau [Streptococcus oralis
SK1074]
gi|400187572|gb|EJO21766.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. BS35b]
Length = 551
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/294 (35%), Positives = 172/294 (58%), Gaps = 4/294 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
G +S L + + D ++ + L ++G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVSKALDSLNLLFENGKSMTRFVTDLLQYLRDLLV 294
>gi|365924292|ref|ZP_09447055.1| DNA polymerase III subunits gamma and tau [Lactobacillus mali KCTC
3596 = DSM 20444]
Length = 570
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/391 (30%), Positives = 206/391 (52%), Gaps = 28/391 (7%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +L+GQ ++ Q+L N I + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVWRPQKFVDLVGQKMITQTLQNAIMTQQTSHAYLFTGPRGTGKTSAAKIFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G+ + +E+D + +D +R I + A +K
Sbjct: 64 CHNQKDGEPCNECATCRAITEGRLNDVIEIDAASNNSVDEIRDIRDKVKYAPTQAD--YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP VVFI TT+ +P +I SR Q++ F +I +
Sbjct: 122 VYIIDEVHMLSTGAFNALLKTLEEPPSNVVFILATTEPHKIPATIISRTQRFDFKRITND 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV- 697
DI+AR++ I AE+N E AL ++A + G +RDA ++LDQ+ G + +L N L+
Sbjct: 182 DIIARMQYILAEKNFKYEEKALRVVAKASAGGMRDALSILDQVLSFGNDVV-TLENALLV 240
Query: 698 -GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII---AGTY 753
G V E+L L+L +TA+ ++ +E+M G D L+ + +++ A
Sbjct: 241 TGSVKHEQLNLYLKLVFEGETAQALQALQEIMSEGKDANRLVEDVIDYCRNLLLYQASPS 300
Query: 754 TIGGRSLTEAE-----------LERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ SL + + ++ L A+ +L+E ++ +R S+ + ++L +
Sbjct: 301 IVEQNSLLDIDDDFKGLASKTTVQSLYEAIDILNEQQQNMRFSTHSDIYLEVLTVKLSQL 360
Query: 803 HSPDLTQSGSSRRQSSRTTEEDPSSTSREAV 833
++ Q+++ E+ S S+E +
Sbjct: 361 ---------VNKVQTNKQDNEELSDASQEEI 382
>gi|358465093|ref|ZP_09175050.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357066167|gb|EHI76325.1| DNA polymerase III, subunit gamma and tau [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 552
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 155/245 (63%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI+A + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIMAHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|406669875|ref|ZP_11077137.1| DNA polymerase III, subunit gamma and tau [Facklamia ignava CCUG
37419]
gi|405581638|gb|EKB55653.1| DNA polymerase III, subunit gamma and tau [Facklamia ignava CCUG
37419]
Length = 678
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/369 (31%), Positives = 197/369 (53%), Gaps = 12/369 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P FDE+IGQ+ + ++L N + +I+ YLF GPRGTGKTS AKI + A+N
Sbjct: 4 QALYRVWRPQTFDEMIGQDPIKETLKNAVKNQQISHAYLFTGPRGTGKTSAAKILAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C T PC C C G + +E+D + G+D +R + ++ A+ +K
Sbjct: 64 CPNTQDGNPCNECDLCQRITQGLLSDVVEIDAASNNGVDEIRNLRDNVRYAASEAT--YK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEPP+RV+FI TT+ +P +I SR Q+Y F +I +
Sbjct: 122 VYIIDEVHMLTTGAFNALLKTLEEPPERVIFILATTEPHKIPATILSRVQRYDFQRISET 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DI L I + + + +AL LIA A+G +RD+ ++LDQ +S +++T +
Sbjct: 182 DIANHLAHILEHDQVAYDSEALALIARAANGGMRDSLSLLDQAISYHPEKVTLDAALSVS 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G +S+E LL +E + RE + G + +L L D++ Y
Sbjct: 242 GSLSQEALLAYIEAIYQHQVEAALAIVREQLSEGKQTARFIEELILLSRDLLLSQYLEKN 301
Query: 758 RS-LTEAELERLK--------HALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSPDLT 808
++ LT+A+LE ++ ++ L+E + +LR S++ + +QL S L
Sbjct: 302 QTLLTDAQLETIEAIPASFYYQMIESLNETQNKLRFSNQPQVYLEIFTVQLASEQPSQLV 361
Query: 809 QSGSSRRQS 817
S ++ + S
Sbjct: 362 SSSATPQDS 370
>gi|421551058|ref|ZP_15997058.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
69166]
gi|433471755|ref|ZP_20429138.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
68094]
gi|433477887|ref|ZP_20435205.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
70012]
gi|433522165|ref|ZP_20478852.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
61103]
gi|433526250|ref|ZP_20482880.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
69096]
gi|433537095|ref|ZP_20493597.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
77221]
gi|433539219|ref|ZP_20495694.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
70030]
gi|402328592|gb|EJU63959.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
69166]
gi|432207712|gb|ELK63700.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
68094]
gi|432214703|gb|ELK70599.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
70012]
gi|432258543|gb|ELL13825.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
61103]
gi|432261014|gb|ELL16271.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
69096]
gi|432272856|gb|ELL27961.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
77221]
gi|432272942|gb|ELL28044.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
70030]
Length = 709
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 97/273 (35%), Positives = 157/273 (57%), Gaps = 3/273 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGV 732
V ++ L ELL ++ D A +ARE+ V
Sbjct: 244 VDKQYLYELLTGIINQDGAALTAKAREMAACAV 276
>gi|206560262|ref|YP_002231026.1| DNA polymerase III subunits gamma and tau [Burkholderia cenocepacia
J2315]
gi|198036303|emb|CAR52199.1| DNA polymerase III subunit gamma [Burkholderia cenocepacia J2315]
Length = 787
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 116/353 (32%), Positives = 191/353 (54%), Gaps = 17/353 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL L+A A GS+RDA ++ DQ ++ +T S V+ ++G
Sbjct: 184 VSHLERILGEERITFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTESAVSGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ + + E + A E+ + + LASL+ I + G
Sbjct: 244 LDQTYMVRLLDALAAGNGPEILAIADEMSLRSLSFSTALQDLASLLHRIAWAQFA-PGSV 302
Query: 760 LTE----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
L E A+L R L ++ + +L L+ + FT TLL++
Sbjct: 303 LDEWPEAADLRRFAETLSPEQVQLFYQIATVGRAELGLAPDEYAGFTMTLLRM 355
>gi|423399657|ref|ZP_17376830.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-2]
gi|401658073|gb|EJS75574.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG2X1-2]
Length = 562
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|300870618|ref|YP_003785489.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
95/1000]
gi|431808555|ref|YP_007235453.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
P43/6/78]
gi|434383092|ref|YP_006704875.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
WesB]
gi|300688317|gb|ADK30988.1| DNA polymerase III, subunits gamma and tau [Brachyspira pilosicoli
95/1000]
gi|404431741|emb|CCG57787.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
WesB]
gi|430781914|gb|AGA67198.1| DNA polymerase III subunits gamma and tau [Brachyspira pilosicoli
P43/6/78]
Length = 521
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 111/320 (34%), Positives = 188/320 (58%), Gaps = 8/320 (2%)
Query: 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSA 515
+N + +++KY+P F+E+IGQ + +++ +I++ +IA YLF G G GKTS A+I +
Sbjct: 3 KNYKVIARKYRPQTFEEVIGQEHITKTISKSIAQKKIAHAYLFSGAHGVGKTSLARIIAK 62
Query: 516 ALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASP 575
ALNCV KPCG C C +G + +E+DG + +G++ +R I++++ P A
Sbjct: 63 ALNCVNGPTDKPCGVCPSCTQIENGTPLDVIEIDGASNRGIENIRTIIENVRIS-PVAG- 120
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
++KV++IDE H + ++ + A LK LEEPP VVFI TT+ D V +I+SRCQ+Y+F +
Sbjct: 121 KYKVYIIDEVHQITNEAFNALLKTLEEPPAHVVFILATTEADRVLPTIRSRCQQYIFKSL 180
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG---KRITSSL 692
D+ L+ I +EN+ + +A+ LIA A GS+RD+ET+L+++ K ITS
Sbjct: 181 GIEDLEKILKGILDKENIAYDDEAIFLIAKQARGSVRDSETILEKMIAYTADKKHITSGD 240
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS---LIMDII 749
V +VG + + + ++ +S D + ++L + VDP ++ L +++ I
Sbjct: 241 VIAVVGGNNFSFVKDFFDVMISKDKKNYFQFVKKLFEESVDPRTFINNLIEYMRVVLMIK 300
Query: 750 AGTYTIGGRSLTEAELERLK 769
+G I +TE E + LK
Sbjct: 301 SGIDDIKLLEITENERDDLK 320
>gi|126454158|ref|YP_001066508.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei 1106a]
gi|242316585|ref|ZP_04815601.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106b]
gi|403518936|ref|YP_006653069.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei BPC006]
gi|126227800|gb|ABN91340.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106a]
gi|242139824|gb|EES26226.1| DNA polymerase III, subunits gamma and tau [Burkholderia
pseudomallei 1106b]
gi|403074578|gb|AFR16158.1| DNA polymerase III subunits gamma and tau [Burkholderia
pseudomallei BPC006]
Length = 825
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 188/352 (53%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
++PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EE + EP AL +A A GS+RDA ++ DQ ++ +T + V+ ++G
Sbjct: 184 VSHLERILGEERIAFEPQALRFLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++ LL+ ++D + + A E+ + + LASL+ I +
Sbjct: 244 LDQTYMVRLLDALAAADGPQILAVADEMALRSLSFSAALQDLASLLHRIAWAQFAPASVL 303
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL 799
E L+ +LLS + QL L+ + FT TLL++
Sbjct: 304 DEWPEAADLRRFAELLSPEQVQLYYQIATVGRGELGLAPDEYAGFTMTLLRM 355
>gi|423618794|ref|ZP_17594627.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD115]
gi|401252486|gb|EJR58745.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus VD115]
Length = 562
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 166/292 (56%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEEEALQIVARAAEGGMRDALSLIDQAISYSDDAVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDML 293
>gi|383938601|ref|ZP_09991806.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae SK674]
gi|383714456|gb|EID70457.1| DNA polymerase III, subunit gamma and tau [Streptococcus
pseudopneumoniae SK674]
Length = 551
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI +R I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G +S L + + D + + L D+G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLL 293
>gi|421594140|ref|ZP_16038602.1| DNA polymerase III subunits gamma and tau [Rhizobium sp. Pop5]
gi|403699780|gb|EJZ17132.1| DNA polymerase III subunits gamma and tau [Rhizobium sp. Pop5]
Length = 621
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPI-FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
R L++KY+P F D ++GQ +V++L N GRIA Y+ G RG GKT+TA+I + AL
Sbjct: 19 RVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARAL 78
Query: 518 NCVATDQTKPCGYCR----ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
N D KP R C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 79 NYKTADVDKPTIDLRVPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 138
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+KV++IDE H+L ++ + LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 139 --RYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 196
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
+I D+V I+A+E ++ EPDAL +IA A+GS RD ++LDQ G + +
Sbjct: 197 RISASDLVGLFSTIAAKEGIDAEPDALAMIARAAEGSARDGLSLLDQAIAHGAGAVQAEA 256
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++++L + + D A + + ++G +P+V+++ LA
Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALGEFQSQYEAGANPVVVLTDLADF 308
>gi|306825065|ref|ZP_07458407.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
taxon 071 str. 73H25AP]
gi|304432501|gb|EFM35475.1| DNA polymerase III, gamma/tau subunit DnaX [Streptococcus sp. oral
taxon 071 str. 73H25AP]
Length = 551
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/245 (40%), Positives = 154/245 (62%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVDGEPCNHCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI + I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIYHILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|229027870|ref|ZP_04184027.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
gi|228733446|gb|EEL84271.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1271]
Length = 562
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|229170872|ref|ZP_04298477.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
gi|423461714|ref|ZP_17438510.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X2-1]
gi|228612607|gb|EEK69824.1| DNA polymerase III subunit gamma/tau [Bacillus cereus MM3]
gi|401135272|gb|EJQ42874.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG5X2-1]
Length = 562
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|119357453|ref|YP_912097.1| DNA polymerase III subunits gamma and tau [Chlorobium
phaeobacteroides DSM 266]
gi|119354802|gb|ABL65673.1| DNA polymerase III, subunits gamma and tau [Chlorobium
phaeobacteroides DSM 266]
Length = 397
Score = 195 bits (495), Expect = 2e-46, Method: Composition-based stats.
Identities = 101/303 (33%), Positives = 172/303 (56%), Gaps = 16/303 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++KY+P F ++ Q + +++ N++ GR+ Y+F G RG GKT+ A++F+ A+NC+
Sbjct: 6 IARKYRPKKFADITAQEHITRTIQNSLRMGRLGHGYIFSGLRGVGKTTAARVFAKAVNCI 65
Query: 521 ATDQ--------TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
+ T+PCG C C DF +G S N E D + +D +R + +++ G P
Sbjct: 66 KMTEDKDYLQHVTEPCGECESCRDFEAGTSLNIAEFDAASNNSVDDIRLLRENVRYG-PQ 124
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
R++V++IDE H+L + AFLK LEEPP +FIF TT++ +P +I SRCQ++ F
Sbjct: 125 KG-RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNF 183
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL------SLLGK 686
+I I A+L +I E + VE DAL LI A GS+RDA+++LDQ+ + LG
Sbjct: 184 KRIPLNAIEAQLLQICVAEQIAVEADALQLIGRKAQGSMRDAQSILDQVIAFSVDAELGD 243
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
I+ + V EL+ + +E + + D + + A+ ++ +G D + +L +
Sbjct: 244 GISYAKVAELLNYIDDEHFFAVTDAVADQDPVKMIDVAQFVLQNGYDEQDFLEKLIEHMR 303
Query: 747 DII 749
+I+
Sbjct: 304 NIL 306
>gi|398828095|ref|ZP_10586297.1| DNA polymerase III, subunit gamma/tau [Phyllobacterium sp. YR531]
gi|398218813|gb|EJN05315.1| DNA polymerase III, subunit gamma/tau [Phyllobacterium sp. YR531]
Length = 605
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 165/291 (56%), Gaps = 7/291 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ +V++L N GRIA ++ G RG GKT+TA+I ALN
Sbjct: 11 RVLARKYRPENFDDLIGQEPMVRTLTNAFETGRIAQAWMLTGVRGVGKTTTARILGRALN 70
Query: 519 CVATDQTKPCG----YCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
D +P C + G+ + +E+D + G+D +R I++ + S
Sbjct: 71 YKNGDIDRPTIDLSIMGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVR--YRPVS 128
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP ++ SRCQ++ +
Sbjct: 129 ARYKVYIIDEVHMLSNQAFNGLLKTLEEPPPHVKFIFATTEIRKVPITVLSRCQRFDLRR 188
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLV 693
I + LRKI+ EN+NV+ +L +IA +GS+RD+ ++ DQ G + + V
Sbjct: 189 IDTSVLTTHLRKIAGLENINVDDTSLSMIARAGEGSVRDSLSIFDQAIAHGAGTVDAEAV 248
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++G+ ++++L E+ M D A ++ R D G DP V+++ LA
Sbjct: 249 RSMLGLADRARIIDLFEMLMRGDVALALREFRAQYDVGADPSVVLTDLADF 299
>gi|239630120|ref|ZP_04673151.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
gi|239527732|gb|EEQ66733.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
8700:2]
Length = 566
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 199/369 (53%), Gaps = 17/369 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F ++IGQ + ++L N + G+ + YLF GPRGTGKTS AKI + ALN
Sbjct: 5 QALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALN 64
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +P C C +G + +E+D + G+D +R I A R K
Sbjct: 65 CLHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRD--KAKYAPTQARVK 122
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L S + A LK LEEPP VVFI TT+ +P +I SR Q++ F +I
Sbjct: 123 VYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPE 182
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R+R I ++ + + AL +IA A+G +RDA ++LDQ LS +T+ ++
Sbjct: 183 DIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVT 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY--TI 755
G V+ L + L ++ D A+ +K +L+ SG DP L+ L + D++ T+
Sbjct: 243 GGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYLRDLLVNQQAPTL 302
Query: 756 GG---RSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
G +SL + + E++ H + +L+ ++QLR+++ + ++L
Sbjct: 303 LGDLEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETT 362
Query: 804 SPDLTQSGS 812
+P +T + +
Sbjct: 363 TPQVTAAPA 371
>gi|160936876|ref|ZP_02084240.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
BAA-613]
gi|158440066|gb|EDP17813.1| hypothetical protein CLOBOL_01764 [Clostridium bolteae ATCC
BAA-613]
Length = 560
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 119/364 (32%), Positives = 187/364 (51%), Gaps = 33/364 (9%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +K++P+ F+++ GQ+ +VQ+L N I+ RI YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKWRPVSFEDVKGQDPIVQTLKNQITSERIGHAYLFCGTRGTGKTSIAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
PC C C SG S N +E+D + G++ +R I + + P R++V
Sbjct: 65 EHPVDGSPCNECPTCRSIQSGSSMNVVEIDAASNNGVENIRDIREQVQ--YPPTEGRYRV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + A LK LEEPP V+FI TT++ +P +I SRCQ+Y F +I
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPSYVIFILATTEVHKIPITILSRCQRYDFKRISLET 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELV 697
I RLR+++ E + VE AL +A ADGSLRDA ++LDQ GK +T E++
Sbjct: 183 IANRLRELTQAEQIQVEDKALLYVAKAADGSLRDALSLLDQCVAFHYGKVLTYDNALEVL 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI-- 755
G V ++ + T + + E++ G +L + D I +
Sbjct: 243 GAVDSGVFSQMFGAIVEGRTKDCICSLEEIVIQG-------RELGQFVTDFIWYMRNLLL 295
Query: 756 --------GGRSLTEAELERLK------------HALKLLSEAEKQLRLSSERCTWFTAT 795
G ++E L++L+ +++ SE QLR +S++
Sbjct: 296 IQSADDAEGLVDMSEENLKQLRSDAGKTDGTTLMRYIRIFSELSNQLRYASQKRVLVEVA 355
Query: 796 LLQL 799
L++L
Sbjct: 356 LIKL 359
>gi|342163536|ref|YP_004768175.1| DNA polymerase III subunits gamma and tau [Streptococcus
pseudopneumoniae IS7493]
gi|341933418|gb|AEL10315.1| DNA polymerase III subunits gamma and tau [Streptococcus
pseudopneumoniae IS7493]
Length = 551
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/293 (36%), Positives = 171/293 (58%), Gaps = 4/293 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI +R I +EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKEHIRYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G +S L + + D + + L D+G ++ L + D++
Sbjct: 241 TGTISLSALDDYVAALSQQDVPKALACLNLLFDNGKSMTRFVTDLLHYLRDLL 293
>gi|347754375|ref|YP_004861939.1| DNA polymerase III subunits gamma and tau [Candidatus
Chloracidobacterium thermophilum B]
gi|347586893|gb|AEP11423.1| DNA polymerase III, subunits gamma and tau [Candidatus
Chloracidobacterium thermophilum B]
Length = 591
Score = 195 bits (495), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/346 (32%), Positives = 190/346 (54%), Gaps = 19/346 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
+++K++P F++++GQ + ++L N + GR+ YLF GPRG GKT+ A++F+ ALNC
Sbjct: 6 IARKWRPQQFEDVVGQAAITRALSNALRTGRLHHAYLFAGPRGVGKTTCARLFARALNCA 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + ++G S + +E+D + G+D +R ++ + G +A R+KVF
Sbjct: 66 EGPTPTPCGVCPSCQETLTGNSLDVLEIDAASHTGVDNIREVIIA-TVGNRTARDRYKVF 124
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + ++ A LK LEEPP VVFI TT++ +P +I SRCQ Y F + I
Sbjct: 125 IIDEVHMLSTSSFNALLKTLEEPPSHVVFIMATTELHKLPETILSRCQVYEFRTVGVDVI 184
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLG--KRITSSLVNELV 697
RLR+I+ E + + AL IA GSLRDA++ L+Q L+ G I + V + +
Sbjct: 185 ADRLRQIAEAEQVPISRAALVQIAQAGRGSLRDAQSALEQVLAFAGTSTEIDEAAVRDAL 244
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G++ L E++E SD A + L+ +G D + +L + + ++
Sbjct: 245 GLIGIGWLSEVVEALHRSDAAAVLMEVERLVRTGHDLRQFLRELMTYLRHLLVAQLVGAD 304
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFT-ATLLQLGSM 802
R +LL A+ ++ + ++ +FT A L++L S+
Sbjct: 305 R--------------ELLPVADSEVAIIKKQSRYFTVAELIRLFSL 336
>gi|363894702|ref|ZP_09321772.1| hypothetical protein HMPREF9629_02083 [Eubacteriaceae bacterium
ACC19a]
gi|361961572|gb|EHL14758.1| hypothetical protein HMPREF9629_02083 [Eubacteriaceae bacterium
ACC19a]
Length = 535
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 177/307 (57%), Gaps = 10/307 (3%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FD +IGQ+ V+ L N I +I+ Y+F G RGTGKTSTAK+F+ A+NC
Sbjct: 4 ALYRKYRPNTFDNIIGQDQVIDVLKNQIKENKISHAYIFSGVRGTGKTSTAKVFARAINC 63
Query: 520 VATDQTK-PCGYCREC-NDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
+ D+ K PC C C N+++ +E+D + +D +R LK PS ++
Sbjct: 64 INYDEQKGPCNECESCLNNYVDT-----IEIDAASNNSVDNIRQ-LKDTIMYQPSFG-KY 116
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
K ++IDE H+L + + A LK LEEPP +VFI TT+I+ +P +I SRCQK+ F K+
Sbjct: 117 KTYIIDEVHMLSTGAFNALLKTLEEPPSHIVFILATTEINKIPSTILSRCQKFEFKKVNS 176
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
DI RL I EN++ E +A+D I+ + DG +RDA ++LDQ+S G I+ + ++ +
Sbjct: 177 SDIKKRLVDILECENISYEDNAVDFISNSCDGGVRDAISILDQVSSYG-NISMNNIDFVT 235
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G S E + L++ + E +K L+ +D L Q+ S ++D + +
Sbjct: 236 GRASIEDIDSLIDNMFKKKSFECIKLINGLISKSIDVKKLPFQIISRLIDALYIQNEVVR 295
Query: 758 RSLTEAE 764
+ +TE E
Sbjct: 296 KDMTEVE 302
>gi|301067270|ref|YP_003789293.1| DNA polymerase III subunit gamma/tau [Lactobacillus casei str.
Zhang]
gi|417984293|ref|ZP_12624917.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 21/1]
gi|300439677|gb|ADK19443.1| DNA polymerase III, gamma/tau subunit [Lactobacillus casei str.
Zhang]
gi|410525921|gb|EKQ00816.1| DNA polymerase III gamma/tau subunits [Lactobacillus casei 21/1]
Length = 565
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 199/369 (53%), Gaps = 17/369 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F ++IGQ + ++L N + G+ + YLF GPRGTGKTS AKI + ALN
Sbjct: 4 QALYRVWRPQQFKDVIGQEAITKTLKNALITGQTSHAYLFTGPRGTGKTSVAKILAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +P C C +G + +E+D + G+D +R I A R K
Sbjct: 64 CLHLEDGEPDNTCEICQAINNGSLTDVIEIDAASNNGVDEIRDIRD--KAKYAPTQARVK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L S + A LK LEEPP VVFI TT+ +P +I SR Q++ F +I
Sbjct: 122 VYIIDEVHMLSSGAFNALLKTLEEPPAHVVFILATTEPHKIPATIISRTQRFDFRRITPE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV R+R I ++ + + AL +IA A+G +RDA ++LDQ LS +T+ ++
Sbjct: 182 DIVKRMRFILDDKQITYDDAALKVIAKAAEGGMRDALSILDQVLSFGDNHVTTEDALDVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTY--TI 755
G V+ L + L ++ D A+ +K +L+ SG DP L+ L + D++ T+
Sbjct: 242 GGVTTAVLGKYLAAVLAKDHAQALKMIEDLLASGKDPGRLIEDLIEYLRDLLVNQQAPTL 301
Query: 756 GG---RSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMH 803
G +SL + + E++ H + +L+ ++QLR+++ + ++L
Sbjct: 302 LGDLEKSLLDDQFKILSENFKPEQIYHMIDVLNSTQQQLRMTNHPEIYLEVATVRLSETT 361
Query: 804 SPDLTQSGS 812
+P +T + +
Sbjct: 362 TPQVTAAPA 370
>gi|452993956|emb|CCQ94494.1| DNA polymerase III, gamma and tau subunits [Clostridium ultunense
Esp]
Length = 537
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/276 (35%), Positives = 167/276 (60%), Gaps = 3/276 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L ++Y+P FDE++GQ + +L N I +G I YLF G +GTGKTSTAKIFS A+N
Sbjct: 3 QALYRQYRPKTFDEVLGQEHITTTLKNQIQKGNIGHAYLFSGTKGTGKTSTAKIFSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + PC C C + + +E+D + +D +R + + P A ++K
Sbjct: 63 CLNPVEGNPCNECEICKGILDESIMDIIEMDAASNNSVDDIRELRDKVVY--PPARAKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
++++DE H+L + A LK LEEPP+ ++FI TT+++ +P++I SRCQ++ F +I +
Sbjct: 121 IYIVDEVHMLSKGAFNALLKTLEEPPKHLIFILATTEMERLPQTILSRCQRFDFKRILNK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIVA + KI E N+ VE AL LIA N+DG++RDA ++LDQ LS +++T +++
Sbjct: 181 DIVANMDKICNELNVPVEEKALRLIARNSDGAMRDALSLLDQCLSYKDEKLTYEDALDIL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
G+ + + L +++ + + + E++ G D
Sbjct: 241 GIANTDLLFSIVDDIQKKNLENLLFKIDEIIQQGKD 276
>gi|350566424|ref|ZP_08935095.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
gi|348662773|gb|EGY79415.1| DNA polymerase III, gamma/tau subunit DnaX [Peptoniphilus indolicus
ATCC 29427]
Length = 545
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/286 (35%), Positives = 169/286 (59%), Gaps = 3/286 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F+E++GQN V +L N I + YLF G RGTGKTS AKI S A+N
Sbjct: 3 QALYRKYRSKTFEEIVGQNHVTTALKNQIINNEFSHAYLFSGTRGTGKTSCAKILSRAVN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C PC C C + + + +E+D + G+D +R + + P + ++K
Sbjct: 63 CEHPVDGNPCNECESCRSILEDRVMDVVEMDAASNNGVDDIRELKDKVV--YPPQNLKYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ ++FI TT+ + +P +I SR Q+Y F +I +
Sbjct: 121 VYIIDEVHMLSKGAFNALLKILEEPPRHLIFILATTEPEKIPTTILSRLQRYNFKRISED 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQL-SLLGKRITSSLVNELV 697
+I + L +IS EN VEP+ +LIA ++DG++RD+ ++LDQL S +++T +++
Sbjct: 181 EISSNLERISKIENREVEPEVFELIANSSDGAMRDSLSLLDQLFSFSDEKLTYERAIDIL 240
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLAS 743
G+VS + L L + + + A+++ EL +G D +L+S L +
Sbjct: 241 GIVSNKFLFNLSDAIIERNLAQSLAEMDELYKAGKDITILISDLIT 286
>gi|229159197|ref|ZP_04287223.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
gi|228624278|gb|EEK81078.1| DNA polymerase III subunit gamma/tau [Bacillus cereus R309803]
Length = 562
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ V ++L N + + +++ YLF GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-EYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +T+ V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLVDQAISYSDETVTTEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDML 293
>gi|357239853|ref|ZP_09127187.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
gi|356751609|gb|EHI68761.1| DNA polymerase III, subunit gamma and tau [Streptococcus ictaluri
707-05]
Length = 560
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 166/275 (60%), Gaps = 4/275 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ FDE++GQ+++ +L + G+I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFDEMVGQSLISTTLKQAVESGKISHAYLFSGPRGTGKTSAAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C D +G + +E+D + G+D +R I + S PS + +K
Sbjct: 63 CPHQVNGEPCNQCDICRDITNGSLEDVIEIDAASNNGVDEIREI-RDKSTYAPSRAT-YK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKQA 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGK-RITSSLVNEL 696
DI L I +E ++ + DAL+LIA A+G +RDA ++LDQ LSL + +++ S+ E+
Sbjct: 181 DIRQHLATILDKEVISYQLDALNLIARRAEGGMRDAFSILDQALSLSSENQVSLSVAEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSG 731
G +S L + ++ + DT+ + + DSG
Sbjct: 241 TGSISMAALDDYVQHLLQEDTSGALNDLETIYDSG 275
>gi|395787151|ref|ZP_10466752.1| DNA polymerase III, subunit gamma and tau [Bartonella birtlesii
LL-WM9]
gi|395411575|gb|EJF78096.1| DNA polymerase III, subunit gamma and tau [Bartonella birtlesii
LL-WM9]
Length = 614
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/296 (34%), Positives = 172/296 (58%), Gaps = 7/296 (2%)
Query: 454 VLENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIF 513
V +N R L++KY+P F +LIGQ +V++L N GRIA ++ G RG GKT+TA+I
Sbjct: 3 VEKNYRVLARKYRPQNFSDLIGQEAMVRTLTNAFETGRIAQAWMLTGIRGVGKTTTARIL 62
Query: 514 SAALNCVATDQTKPCGYC----RECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAG 569
+ ALN D +P C I G+ + +E+D + G+D +R I++ +
Sbjct: 63 ARALNYKTKDIDQPTTILNTLGEHCTQIIEGRHIDVIEMDAASHTGIDDIREIIEQIRYR 122
Query: 570 LPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQK 629
P A+ R+KV++IDE H+L ++ + LK LEEPP V FIF TT+I VP +I SRCQ+
Sbjct: 123 -PVAA-RYKVYIIDEVHMLSTQAFNGLLKTLEEPPAHVKFIFATTEIRKVPITILSRCQR 180
Query: 630 YLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRI 688
+ +I+ + LR+I+ EN+ VE A+ +I A+GS+RDA ++ DQ ++ +
Sbjct: 181 FDLRRIESTILSTHLRQIAKCENVEVEDQAISMIVRAAEGSVRDALSIFDQAIAHSYGNV 240
Query: 689 TSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
++ V ++G+ + ++++L E M + + R D+G DP+ ++++LA
Sbjct: 241 SALAVRAMLGLADQARVIDLFEFIMKGNVVNALHEFRSQYDAGADPLTILTELADF 296
>gi|359403129|ref|ZP_09196036.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
KC3]
gi|438118365|ref|ZP_20871342.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
IPMB4A]
gi|357968346|gb|EHJ90855.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
KC3]
gi|434155792|gb|ELL44710.1| DNA polymerase III subunits gamma and tau [Spiroplasma melliferum
IPMB4A]
Length = 690
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 192/352 (54%), Gaps = 15/352 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P FD+++GQ + ++L N I + YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 SLYRKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ D PC C C + + + E+D + G+D +R I ++ LP+ + ++KV
Sbjct: 65 INLDNGNPCNECASCKEINRAGAVDVFEIDAASNNGVDEIREIRNNVQL-LPTMT-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPPQ VVFI TT+ +P +I SRCQ+Y F KI +
Sbjct: 123 YIIDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRCQQYNFRKISKVE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVG 698
+ + I +E + + A+ IAL ADGS RD+ ++L+Q+ + R +T VN +
Sbjct: 183 LENNIINILQKEEIKYDLAAIKEIALLADGSARDSLSILEQVIMFSDRNVTLENVNIIFA 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---I 755
VS+ L+LL+ + T E + ++++ +G D VL L ++ +I T I
Sbjct: 243 TVSKTIKLKLLKDILEYKTTEVLIASKKIYQAGSDFEVLTLNLLDILKEIFEFKQTNNLI 302
Query: 756 GGRSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
L+E + + L L L +EA ++R S + +F LL+
Sbjct: 303 FLSLLSEEQAKGFAEQLSSKELIMLLDLFTEAASKMRNSKTQEMYFELILLK 354
>gi|229015425|ref|ZP_04172428.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
gi|229021630|ref|ZP_04178218.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
gi|423388207|ref|ZP_17365433.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-3]
gi|228739676|gb|EEL90084.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1272]
gi|228745867|gb|EEL95866.1| DNA polymerase III subunit gamma/tau [Bacillus cereus AH1273]
gi|401643625|gb|EJS61320.1| DNA polymerase III, subunit gamma and tau [Bacillus cereus
BAG1X1-3]
Length = 562
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 167/292 (57%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F +++GQ V ++L N + + +++ Y+F GPRGTGKT+ AK+F+ A+N
Sbjct: 4 QALYRTWRPQKFGDVVGQKHVTKTLQNALLQEKVSHAYVFSGPRGTGKTTIAKVFAKAIN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + PSA ++K
Sbjct: 64 CEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYA-PSAV-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP V+FI TT+ +P +I SRCQ++ F KI
Sbjct: 122 VYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVN 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
DIV RL + E VE +AL ++A A+G +RDA +++DQ +S + +TS V +
Sbjct: 182 DIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDETVTSEDVLAVT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS++ L L+E +D + ++ E+M G DP+ M D++
Sbjct: 242 GSVSQQYLGNLVECIRENDVSRALRIIDEMMSKGKDPVRFMEDFIYYYRDML 293
>gi|223558002|gb|ACM91008.1| DNA polymerase III subunit gamma/tau [uncultured bacterium URE4]
Length = 577
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/303 (34%), Positives = 176/303 (58%), Gaps = 5/303 (1%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P F+ L+GQ+ + ++L N+I RG++A YLF GPRG GKT+TA+IF+ +NC
Sbjct: 8 ARKYRPDSFETLLGQDNIARTLSNSIKRGQLAHAYLFCGPRGVGKTTTARIFAKMINCAH 67
Query: 522 T-DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C F G+S E+D + G+D ++ +++ + +P ++ V+
Sbjct: 68 PGPDMEPCGECESCVSFQEGRSYCIHELDAASNNGVDDIKALIEQVQ--VPPQVGKYSVY 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + AFLK LEEPP +F+ TT+ + +I SRCQ Y FN+I D+
Sbjct: 126 IIDEVHMLSQSAFNAFLKTLEEPPAHAIFVLATTEKHKILPTILSRCQTYDFNRIGIPDM 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V LR I+A+E + ++ ++L +IA ADG++RDA T+ DQ ++ G I V + V
Sbjct: 186 VRNLRGIAAKEGITIDDESLHVIAQKADGAMRDALTIFDQTVAFCGTDIKYEDVVRNLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + ++E +S A + E++ G + + ++ L+S + D++ T G +
Sbjct: 246 LDYDYSFGMVENFLSGSYAAALSSFDEILSKGFNALHFVAALSSHLRDLVVAR-TAGLDA 304
Query: 760 LTE 762
L E
Sbjct: 305 LLE 307
>gi|418964892|ref|ZP_13516680.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. constellatus SK53]
gi|383344293|gb|EID22462.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. constellatus SK53]
Length = 554
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/312 (35%), Positives = 177/312 (56%), Gaps = 4/312 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V +L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + + K
Sbjct: 63 CPHRKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDI-RDKSTYAPSLA-KHK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DIVA + I +EN+ E DA+ +IA A+G +RDA ++LDQ LSL ++T+++ E+
Sbjct: 181 DIVAHIEWILQQENIGFENDAVQIIARRAEGGMRDALSILDQALSLTQDNQLTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
G +S L + + DT+ ++ + DSG + ++ L + D++ G
Sbjct: 241 TGSISLGALDAYVTAVLMHDTSAALENLDVIFDSGKNMARFVTDLLQYLRDLLIVKTGGG 300
Query: 757 GRSLTEAELERL 768
+E+ L+ L
Sbjct: 301 NTHTSESFLDNL 312
>gi|350543735|ref|ZP_08913431.1| DNA polymerase III subunits gamma and tau [Candidatus Burkholderia
kirkii UZHbot1]
gi|350528484|emb|CCD35504.1| DNA polymerase III subunits gamma and tau [Candidatus Burkholderia
kirkii UZHbot1]
Length = 704
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 191/352 (54%), Gaps = 15/352 (4%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F+ L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKSFESLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+KPCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSKPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYTPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPATVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L+ I +E++ EP AL L++ ADGS+RDA ++ DQ ++ +T V ++G
Sbjct: 184 VSHLQNILEQESIVFEPQALRLLSRAADGSMRDALSLTDQAIAYSANEVTEEAVRGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG-- 757
+ + L+ L++ D A + A E+ + + LASL+ I +
Sbjct: 244 LDQSCLIRLIDALAGGDGALVLSIADEMALRSLSFSTALQDLASLLHRIAWAQFAPSSVL 303
Query: 758 ---------RSLTEA-ELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
R EA +E+++ ++ + +L L+ + FT TLL++
Sbjct: 304 DEWPEAADIRHFAEALSVEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRM 355
>gi|418290872|ref|ZP_12902968.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
NM220]
gi|372200844|gb|EHP14852.1| DNA polymerase III, subunits gamma and tau [Neisseria meningitidis
NM220]
Length = 738
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/273 (35%), Positives = 156/273 (57%), Gaps = 3/273 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 35 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 94
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 95 NAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 152
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 153 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 212
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + P AL L+ A GS+RDA ++LDQ LG ++ + V +++G
Sbjct: 213 ADHLAHVLDSEKITYAPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIGA 272
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGV 732
V ++ L ELL ++ D A +ARE+ V
Sbjct: 273 VDKQYLYELLTGIINQDGAALTAKAREMAACAV 305
>gi|186475716|ref|YP_001857186.1| DNA polymerase III subunits gamma and tau [Burkholderia phymatum
STM815]
gi|184192175|gb|ACC70140.1| DNA polymerase III, subunits gamma and tau [Burkholderia phymatum
STM815]
Length = 793
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 117/354 (33%), Positives = 191/354 (53%), Gaps = 19/354 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F L+GQ VV++L + + GR+ YLF G RG GKT+ ++IF+ ALNC
Sbjct: 6 LARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ PCG CR C + G+ +++E+D + +G+D + +L+ A RFKV+
Sbjct: 66 TGVTSTPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLER--AVYAPVDARFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + A LK LEEPP V FI TTD +P ++ SRC ++ ++ G I
Sbjct: 124 MIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V+ L +I EEN+ E AL L+A ADGS+RDA ++ DQ ++ ++T V ++G
Sbjct: 184 VSHLERILGEENIAHEAQALRLLARAADGSMRDALSLTDQAIAYSANQVTEEAVRGMLGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ + L+ LL+ ++ A + A E+ + + LASL+ I + S
Sbjct: 244 LDQSYLIRLLDALVAGGGAAVLSVADEMALRSLSFSTALQDLASLLHKIAWAQF--APSS 301
Query: 760 LTE-----AELERLKHAL---------KLLSEAEKQLRLSSERCTWFTATLLQL 799
+ E A+L R AL ++ + +L L+ + FT TLL++
Sbjct: 302 VLEEWPEAADLRRFADALSPEQVQLFYQIATIGRSELGLAPDEYAGFTMTLLRM 355
>gi|343524409|ref|ZP_08761367.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
gi|343398058|gb|EGV10591.1| DNA polymerase III, subunit gamma and tau [Streptococcus
constellatus subsp. pharyngis SK1060 = CCUG 46377]
Length = 554
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 177/312 (56%), Gaps = 4/312 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V +L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFGQLVGQKVVATTLRQAVEQDKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C G + +E+D + G+D +R I + S PS + + K
Sbjct: 63 CPHQKNGEPCNECYICQAITEGSLEDVIEIDAASNNGVDEIRDI-RDKSTYAPSLA-KHK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKSIKTK 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DIVA + I +EN+ E DA+ +IA A+G +RDA ++LDQ LS ++T+++ E+
Sbjct: 181 DIVAHIEWILQQENIGFENDAVQVIARRAEGGMRDALSILDQALSFTQDNQLTTAISEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
G +S L + ++ DT+ ++ + DSG + ++ L + D++ G
Sbjct: 241 TGSISLGALDAYVTAVLTHDTSAALENLDVIFDSGKNMARFVTDLLQYLRDLLIVKTGGG 300
Query: 757 GRSLTEAELERL 768
+E+ L+ L
Sbjct: 301 NTHTSESFLDNL 312
>gi|417914929|ref|ZP_12558560.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
gi|342835680|gb|EGU69914.1| DNA polymerase III, subunit gamma and tau [Streptococcus mitis bv.
2 str. SK95]
Length = 552
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/245 (40%), Positives = 156/245 (63%), Gaps = 4/245 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ F +L+GQ +V ++L + + +I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ +PC C C G + +E+D + G+D +R I + S PS + R+K
Sbjct: 63 CLNQVDGEPCNNCYICQAVTEGSLEDVIEMDAASNNGVDEIREI-RDKSTYAPSLA-RYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP Q VVFI TT++ +P +I SR Q++ F I+
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIRTQ 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
DI ++ I ++EN++ EP+A+++IA A+G +RDA ++LDQ LSL G +T+++ E+
Sbjct: 181 DIKNHIQTILSKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNALTTAISEEI 240
Query: 697 VGVVS 701
G +S
Sbjct: 241 TGTIS 245
>gi|282878261|ref|ZP_06287057.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
gi|281299679|gb|EFA92052.1| DNA polymerase III, subunit gamma and tau [Prevotella buccalis ATCC
35310]
Length = 593
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 197/369 (53%), Gaps = 18/369 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P+ FD ++GQ+ ++ +L N + G++A YLF GPRG GKT+ A+IF+ A+NC+
Sbjct: 8 ARKYRPMTFDAVVGQSALITTLKNAVKSGKLAHAYLFCGPRGVGKTTCARIFAKAINCLN 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
T + C C C F +S N E+D + ++ ++ ++ +P ++KVF
Sbjct: 68 PTADGEACNECESCQAFNEQRSYNIFELDAASNNSVENIKSLMDQ--TRIPPQVGKYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y F ++ DI
Sbjct: 126 IIDEVHMLSTSAFNAFLKTLEEPPAHVIFILATTEKHKILPTIISRCQIYDFERMATTDI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
+ L+ ++ +E + E AL++IA ADG +RDA ++ DQ S IT V E + V
Sbjct: 186 INHLKNVAQQEGITYEDAALNIIAEKADGGMRDALSVFDQAASFCQGNITYDKVLEDLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAG--TYTIGG 757
+ + ++++L++ + ++ + ++ G D +L + LAS I +++ T+
Sbjct: 246 LDADNYFKMVDLSLENKVSDVMVLLNSILAKGFDGGLLTNGLASHIRNVLMAKDAQTLPL 305
Query: 758 RSLTE------------AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
++E + L ALK+L+ + R SS + TL+++ +
Sbjct: 306 LEVSEQQRQKYQQQAQKCPTKFLYQALKILNRCDVNYRQSSNKRLLVELTLIEVAQVTQA 365
Query: 806 DLTQSGSSR 814
D G+ R
Sbjct: 366 DDASDGAGR 374
>gi|291545138|emb|CBL18247.1| DNA polymerase III, subunits gamma and tau [Ruminococcus
champanellensis 18P13]
Length = 530
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 2/302 (0%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD++I Q + +L N I G+ A YLF G RGTGKT+ A+IF+ A+N
Sbjct: 3 QALYRKWRPRTFDDVISQPHITTTLKNQIQSGKTAHAYLFTGSRGTGKTTCARIFAKAIN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ PC C C D + + +E+D + G+D +R L+ + P ++K
Sbjct: 63 CLHATDGNPCQQCEICRDAEAFSLSDIIEIDAASNNGVDDIRE-LRDGAVYTPERC-KYK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK +EEPP V FI TT+I VP +I SRCQ++ F +I
Sbjct: 121 VYIIDEVHMLSQSAFNALLKIMEEPPAFVKFILATTEIHKVPATIVSRCQRFDFRRILPE 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVG 698
DI ARL I+ EE L ++ A LIA +DG +RDA ++LDQ + IT V+ G
Sbjct: 181 DITARLLYIAGEEQLTLDEQAARLIARLSDGGMRDALSLLDQCAAYDSNITLDTVSAAAG 240
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGR 758
+ + L +LL+ SD A+ V+ EL D + L +L + + +++ T G
Sbjct: 241 IAGRDALFDLLDAMTQSDPAKAVRILDELYAKSKDMLRLCEELIAQLRNVMLLHVTNGDT 300
Query: 759 SL 760
SL
Sbjct: 301 SL 302
>gi|256828009|ref|YP_003156737.1| DNA polymerase III subunits gamma and tau [Desulfomicrobium
baculatum DSM 4028]
gi|256577185|gb|ACU88321.1| DNA polymerase III, subunits gamma and tau [Desulfomicrobium
baculatum DSM 4028]
Length = 614
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 159/284 (55%), Gaps = 3/284 (1%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL+ +Y+P F E+ GQ+ V + L S GR+AP YLF G RG GKT+ A+IF+ ALNC
Sbjct: 5 SLTARYRPQSFAEVAGQDAVKRILSRAASTGRVAPAYLFSGTRGVGKTTLARIFAKALNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
++PC C C G + + +E+DG + G+D VR + + + G R+KV
Sbjct: 65 QNGPASEPCNQCPICRQITLGSAVDVVEIDGASNTGVDNVRRLKEDV--GYAPLECRYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+IDE H+L + + A LK LEEPP V FI TT+ + P++I SRCQ ++F ++ +
Sbjct: 123 IIIDEAHMLSKQAFNALLKTLEEPPGHVTFIMATTEPEKFPQTIISRCQHFVFKRLPQAE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVG 698
+V L + E+ EP A+ L+A GS+RD ++L Q+ LG +T + V E++G
Sbjct: 183 LVRHLDGVLKRESFPAEPSAVTLVARRGAGSVRDGMSLLGQVMALGSDSLTLADVREVLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLA 742
+ E + L+E S D +++D GVD + +LA
Sbjct: 243 LAGGEVFVRLIECVQSRDLQGLHALLTQILDQGVDLGFFLRELA 286
>gi|424916066|ref|ZP_18339430.1| DNA polymerase III, subunit gamma/tau [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852242|gb|EJB04763.1| DNA polymerase III, subunit gamma/tau [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 624
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 169/292 (57%), Gaps = 8/292 (2%)
Query: 459 RSLSQKYKPI-FFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
R L++KY+P F D ++GQ +V++L N GRIA Y+ G RG GKT+TA+I + AL
Sbjct: 19 RVLARKYRPKDFTDLMVGQEPMVRTLTNAFETGRIAQAYMLTGVRGVGKTTTARILARAL 78
Query: 518 NCVATDQTKPCGYCR----ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA 573
N +D KP R C + G+ + +E+D + G+D +R I++ + SA
Sbjct: 79 NYKTSDVDKPTIDLRTPGEHCQAIMEGRHVDVIEMDAASHTGIDDIREIIEQVRYRPVSA 138
Query: 574 SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFN 633
R+KV++IDE H+L ++ + LK LEEPP+ V FIF TT+I VP ++ SRCQ++
Sbjct: 139 --RYKVYIIDEVHMLSTQAFNGLLKTLEEPPEHVKFIFATTEIRKVPITVLSRCQRFDLR 196
Query: 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSL 692
+I D+V I+A+E + EPDAL +IA A+GS RD ++LDQ G + +
Sbjct: 197 RISASDLVGLFSTIAAKEGIEAEPDALAMIARAAEGSARDGLSLLDQAIAHGAGAVQAEA 256
Query: 693 VNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASL 744
V ++G+ ++++L + + D A + + ++G +P+V+++ LA
Sbjct: 257 VRGMLGLADRARIVDLFQHVVKGDVAAALGEFQSQYEAGANPVVVLTDLADF 308
>gi|110003914|emb|CAK98254.1| putative dna polymerase III gamma/tau subunits protein [Spiroplasma
citri]
Length = 690
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 121/352 (34%), Positives = 192/352 (54%), Gaps = 15/352 (4%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
SL +KY+P FD+++GQ + ++L N I + YLF GPRGTGKTS AKIF+ A+NC
Sbjct: 5 SLYRKYRPNNFDKIVGQIEIRKALKNAIINNTFSHAYLFSGPRGTGKTSIAKIFAKAINC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ D PC C C + + + E+D + G+D +R I ++ LP+ + ++KV
Sbjct: 65 INLDNGNPCNECASCKEINRAGAVDVFEIDAASNNGVDEIREIRNNVQL-LPTMT-KYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPPQ VVFI TT+ +P +I SRCQ+Y F KI +
Sbjct: 123 YIIDEIHMLTNSAFNALLKTLEEPPQHVVFILATTESHKIPATIISRCQQYNFRKISKVE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVG 698
+ + I +E + + A+ IAL ADGS RD+ ++L+Q+ + R +T VN +
Sbjct: 183 LENNIINILQKEEIKYDLTAIKEIALLADGSARDSLSILEQVIMFSDRNVTLENVNIIFA 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---I 755
VS+ L+LL+ + T E + ++++ +G D VL L ++ +I T I
Sbjct: 243 TVSKTIKLKLLKDILEYKTTEVLIASKKIYQAGSDFEVLTLNLLDILKEIFEFKQTNNLI 302
Query: 756 GGRSLTEAEL---------ERLKHALKLLSEAEKQLRLSSERCTWFTATLLQ 798
L+E + + L L L +EA ++R S + +F LL+
Sbjct: 303 FLSLLSEEQAKGFAEQLSSKELIMLLDLFTEAASKMRNSKTQEMYFELILLK 354
>gi|300811148|ref|ZP_07091660.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
gi|300497852|gb|EFK32862.1| DNA polymerase III, subunit gamma and tau [Lactobacillus
delbrueckii subsp. bulgaricus PB2003/044-T3-4]
Length = 607
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 177/307 (57%), Gaps = 7/307 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD+++GQ + +L N++ RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +PC C C G + +E+D + +D +R +L + P+ ++K
Sbjct: 64 CLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP VVFI TT++ VP +I SR Q+Y F + +
Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---RITSSLVNE 695
+V R+ I +E + E AL +IA ADG +RDA ++LDQL K R +L E
Sbjct: 182 AMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDAL--E 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G ++E++ +LL ++ D+ + A+ + G +++++ SL + + T T
Sbjct: 240 VTGFAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTIQAMLFTKTG 299
Query: 756 GGRSLTE 762
G LT+
Sbjct: 300 QGEFLTD 306
>gi|326790139|ref|YP_004307960.1| DNA polymerase III subunits gamma and tau [Clostridium lentocellum
DSM 5427]
gi|326540903|gb|ADZ82762.1| DNA polymerase III, subunits gamma and tau [Clostridium lentocellum
DSM 5427]
Length = 537
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 134/421 (31%), Positives = 204/421 (48%), Gaps = 31/421 (7%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P FD+++GQ +V++L N I+ R+A YLF G RGTGKTS AKIF+ A+NC
Sbjct: 5 ALYRKYRPYIFDDVVGQGHIVRTLKNQINSHRVAHAYLFSGSRGTGKTSIAKIFARAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
CG C C G N +E+D + G+D +R I + + A ++KV
Sbjct: 65 EEPVNGSACGKCETCKRISDGAGINIIEIDAASHNGVDNIREINEEVK--YTPAVGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++IDE H+L + + A LK LEEPP V+FI TTD +P +I SRCQ++ F +I +
Sbjct: 123 YIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTDPQKIPVTILSRCQRFDFKRISAKE 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSL-LGKRITSSLVNELV 697
I L E +++E AL IA ADG +RDA ++L+Q +S G+ IT V LV
Sbjct: 183 IEETLISYMQTEKIDIEEKALAYIARLADGGMRDALSILEQSISFYFGETITLDKVLYLV 242
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G V L E+++ D + ++ E+ G +S L +++ T GG
Sbjct: 243 GAVDSNILFEMIDAIAGKDATKVLELCEEVNRQGRSMRQFVSDLLEHSRNLLVAKTTKGG 302
Query: 758 RSLTEAELE---------------RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+ + LE L +K LS E ++R S LL+L +
Sbjct: 303 VEVLDYSLEYIEALKKQASDISTNELMRYMKHLSGLEYEMRTSVSPRILLEVALLKLSEV 362
Query: 803 H---SPD--LTQSGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQYMPQNAVSPASLREP 857
SP+ +T+ + + +E S + VV Q P+ + P L E
Sbjct: 363 QMDSSPEGMMTKVQLLEEKLEKLMQEGLSVAAPVQVV-------QAAPKKEIVPHKLPEA 415
Query: 858 V 858
V
Sbjct: 416 V 416
>gi|269138376|ref|YP_003295076.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda
EIB202]
gi|387867093|ref|YP_005698562.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda
FL6-60]
gi|267984036|gb|ACY83865.1| DNA polymerase III, subunits gamma and tau [Edwardsiella tarda
EIB202]
gi|304558406|gb|ADM41070.1| DNA polymerase III subunits gamma and tau [Edwardsiella tarda
FL6-60]
Length = 689
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/331 (33%), Positives = 183/331 (55%), Gaps = 18/331 (5%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 43 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 102
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 103 TGITATPCGVCDNCREIEQGRFVDLLEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 160
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V F+ TTD +P +I SRC ++ + I
Sbjct: 161 LIDEVHMLSRHSFNALLKTLEEPPPHVKFLLATTDPQKLPVTILSRCLQFHLRALDHEQI 220
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
A+L KI+ E L EP AL L+A A+GS+RDA ++ DQ +G+ +IT+ V++++G
Sbjct: 221 RAQLEKIAHAEALTAEPRALQLLARAAEGSMRDALSLTDQAIAMGQGQITADAVSQMLGT 280
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
+ +E+ L L+E ++D + R + GVD +L+++++A + +
Sbjct: 281 LDDEQPLALIEALTAADGTLVMARVEQAAGRGVD-------WENLLVEMLALLHRVAMLQ 333
Query: 760 LTEAELE--------RLKHALKLLSEAEKQL 782
L + L+ RL+ ++L A+ QL
Sbjct: 334 LLPSALDSQFAAVEPRLRELARMLPPADLQL 364
>gi|27383227|ref|NP_774756.1| DNA polymerase III subunits gamma and tau [Bradyrhizobium japonicum
USDA 110]
gi|27356401|dbj|BAC53381.1| DNA polymerase III tau subunit [Bradyrhizobium japonicum USDA 110]
Length = 613
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 103/294 (35%), Positives = 173/294 (58%), Gaps = 9/294 (3%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
R L++KY+P FD+LIGQ VV+++ N GRI ++ G RG GKT+TA+I + ALN
Sbjct: 22 RVLARKYRPSSFDDLIGQEAVVRTVSNAFETGRIPQAWILTGVRGVGKTTTARILARALN 81
Query: 519 CVATDQTK--PCGYCR----ECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS 572
D + P + C + + + +E+D + G+D VR I + S
Sbjct: 82 YEMPDGSVKGPTIHMPNLGVHCQAIMESRHMDVLEMDAASHTGVDDVRQI--NDSVRYAP 139
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
AS R+KV++IDE H+L + + AFLK LEEPP+ F+F TT+I VP ++ SRCQ++
Sbjct: 140 ASARYKVYIIDEVHMLSTAAFNAFLKTLEEPPEHAKFVFATTEIRKVPVTVLSRCQRFDL 199
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSS 691
+++ ++ L I+A+E++ +EP+AL +IA A+GS+RD+ ++LDQ ++ + +
Sbjct: 200 RRVEADVLMKHLASIAAKESVEIEPEALGIIARAAEGSVRDSLSLLDQAIAHAAGTVKAD 259
Query: 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
V +++G+ ++++L + D A K R+ D G DP+V++S LA +
Sbjct: 260 AVRQMLGLADRTRVIDLFDSLARGDIAAAFKEFRDQYDVGADPIVVLSDLAEFV 313
>gi|417890624|ref|ZP_12534696.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21200]
gi|341854397|gb|EGS95267.1| DNA polymerase III, subunit gamma and tau [Staphylococcus aureus
subsp. aureus 21200]
Length = 565
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 108/348 (31%), Positives = 186/348 (53%), Gaps = 6/348 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N ++L + Y+P F++++GQ V ++L N IS+ + + Y+F GPRGTGKTS AK+F+ A
Sbjct: 2 NYQALYRMYRPQSFEDVVGQEHVTKTLRNAISKEKQSHAYIFSGPRGTGKTSIAKVFAKA 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
+NC+ + +PC C C G + + +E+D + G+D +R I + PS S +
Sbjct: 62 INCLNSTDGEPCNECHICKGITQGTNSDVIEIDAASNNGVDEIRNIRDKVKYA-PSES-K 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
+KV++IDE H+L + + A LK LEEPP +FI TT+ +P +I SR Q++ F I
Sbjct: 120 YKVYIIDEVHMLTTGAFNALLKTLEEPPAHAIFILATTEPHKIPPTIISRAQRFDFKAIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
IV RL+ ++ + + E +AL IA ++G +RDA +++DQ G +T
Sbjct: 180 LDQIVERLKFVADAQQIEYEEEALAFIAKASEGGMRDALSIMDQAIAFGDGTLTLQDALN 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT- 754
+ G V +E L L + + D + K+ + + G + L++ + + D I +
Sbjct: 240 VTGSVHDEALNHLFDDIVQGDVQASFKKYHQFITEGKEVNRLINDMIYFVRDTIMNKTSE 299
Query: 755 --IGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLG 800
R+L EL+ L + L+++ +R S + F L++L
Sbjct: 300 KDTEYRALMNLELDMLYQMIDLINDTLVSIRFSVNQNVHFEVLLVKLA 347
>gi|336063958|ref|YP_004558817.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
gi|334282158|dbj|BAK29731.1| DNA polymerase III subunit gamma/tau [Streptococcus pasteurianus
ATCC 43144]
Length = 559
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/339 (33%), Positives = 192/339 (56%), Gaps = 20/339 (5%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +KY+ FDE++GQ ++ +L +S G+I+ YLF GPRGTGKTS AKIF+ A+N
Sbjct: 3 QALYRKYRSQTFDEMVGQTVISSTLKQAVSSGKISHAYLFSGPRGTGKTSAAKIFAKAMN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC +C C D +G + +E+D + G+D +R I + S PS + +K
Sbjct: 63 CPNQVNGEPCNHCDICRDITNGSLEDVIEIDAASNNGVDEIREI-RDKSTYAPSRAT-YK 120
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + + A LK LEEP + VVFI TT++ +P +I SR Q++ F IK
Sbjct: 121 VYIIDEVHMLSTGAFNALLKTLEEPTENVVFILATTELHKIPATILSRVQRFEFKAIKLA 180
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLL-GKRITSSLVNEL 696
I L I +E ++ E DAL LIA A+G +RDA ++LDQ LSL ++ ++ E+
Sbjct: 181 AIREHLANILDKEEISYEEDALTLIAHCAEGGMRDALSILDQALSLTPDNHVSLAIAEEI 240
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI- 755
G +S L + + +++ T++ + + DSG MS+ A+ +++ + +
Sbjct: 241 TGSISMTALDDFVANVLANQTSQALTNLETIFDSGKS----MSRFATDLLNYLRDLLVVQ 296
Query: 756 -GGR----------SLTEAELERLKHALKLLSEAEKQLR 783
GG+ +L AE R+ + L+++A +++
Sbjct: 297 TGGKNTHTSQKFQENLATAEQNRIFTMIDLVTKALPEIK 335
>gi|330996185|ref|ZP_08320075.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
xylaniphila YIT 11841]
gi|329573689|gb|EGG55280.1| DNA polymerase III, subunit gamma and tau [Paraprevotella
xylaniphila YIT 11841]
Length = 604
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 123/398 (30%), Positives = 207/398 (52%), Gaps = 19/398 (4%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV- 520
++KY+P FD ++GQ + +L N I+ G++A YLF GPRG GKT+ A+IF+ +NC+
Sbjct: 8 ARKYRPSAFDAVVGQEALTTTLKNAIAAGKLAHAYLFCGPRGVGKTTCARIFAKTINCLH 67
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ + C C C F +S N E+D + ++ +R +++ + +P R+KVF
Sbjct: 68 PSGNGEACDECESCKAFNEQRSLNIHELDAASNNSVEEIRALIEKVR--IPPQVGRYKVF 125
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + + AFLK LEEPP V+FI TT+ + +I SRCQ Y FN++ I
Sbjct: 126 IIDEVHMLSTAAFNAFLKTLEEPPSYVIFILATTEKHKILPTILSRCQVYDFNRMSVQAI 185
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVGV 699
V L+ ++ +E EP+AL++IA ADG +RDA ++ DQ +S G +T V E + V
Sbjct: 186 VNHLKFVADKEGYAYEPEALNIIAQKADGGMRDALSIFDQTVSFTGGNLTYKKVIENLNV 245
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI---- 755
+ E L + + ++ A+ + E+++ G + ++ LAS + D++ +
Sbjct: 246 LDYEYYFRLTDHFLKNEAAQCMLVFNEILEKGFEGSHFITGLASHLRDLLVSHDAVTLPL 305
Query: 756 -----GGRSLTEAELER-----LKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSMHSP 805
R+ + + +R L A+KL S+ + R S + TL+QL +
Sbjct: 306 LEVSDSIRARYQEQSQRCTPKFLYRAIKLCSDCDLNYRASKNKRLLVEITLIQLSQLTLE 365
Query: 806 DLTQ-SGSSRRQSSRTTEEDPSSTSREAVVYKRMSGPQ 842
D + SG S +S + P+ T + PQ
Sbjct: 366 DDSAGSGRSPEKSLKPLFAQPAGTVQPTTTPVNPQKPQ 403
>gi|313124288|ref|YP_004034547.1| DNA polymerase iii, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
gi|312280851|gb|ADQ61570.1| DNA polymerase III, gamma/tau subunit [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 607
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 177/307 (57%), Gaps = 7/307 (2%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L +K++P FD+++GQ + +L N++ RG+++ +LF GPRGTGKTS AKIF+ ALN
Sbjct: 4 QALYRKWRPRTFDDVVGQEAITDTLKNSLIRGKVSHAFLFAGPRGTGKTSCAKIFAKALN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + +PC C C G + +E+D + +D +R +L + P+ ++K
Sbjct: 64 CLNLQEGEPCNECSNCLAADQGAMPDIIEMDAASNNSVDEIRDLLDKVHYA-PTEG-KYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP VVFI TT++ VP +I SR Q+Y F + +
Sbjct: 122 VYIIDEVHMLSISAFNALLKTLEEPPASVVFILATTELQKVPATIISRTQRYNFKRFSNE 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK---RITSSLVNE 695
+V R+ I +E + E AL +IA ADG +RDA ++LDQL K R +L E
Sbjct: 182 AMVQRMEYILGQEGVEYEDKALKVIAQVADGGMRDALSILDQLLSFEKSSVRYEDAL--E 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
+ G ++E++ +LL ++ D+ + A+ + G +++++ SL + + T T
Sbjct: 240 VTGFAAQEQVEKLLLALLNGDSQTALDLAKSAIQDGASAQNILNEIISLTVQAMLFTKTG 299
Query: 756 GGRSLTE 762
G LT+
Sbjct: 300 QGEFLTD 306
>gi|253682734|ref|ZP_04863530.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
1873]
gi|253561056|gb|EES90509.1| DNA polymerase III subunit gamma/tau [Clostridium botulinum D str.
1873]
Length = 541
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 197/356 (55%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+E++GQ + +L N + RIA YLF G RGTGKTSTAKIFS A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G + + E+D + +D +R +++ + P ++KV
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVK--YPPREGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L AFLK LEEPP++VVFI TTD +P +I SRCQ++ F +IK D
Sbjct: 123 YIMDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRCQRFDFKRIKSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL KI+ E+ + + +L LIA +DG++RDA ++LDQ +S+ ++ V ++G
Sbjct: 183 IFERLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYDQVINMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQLAS 743
+V+ + LL+L + D +++ +++ +G D MV +SQ
Sbjct: 243 LVTNDNLLKLTNTIIDKDIENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMVKVSQNPE 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ + +E + +++L E E+Q + S + + +++++
Sbjct: 303 DVLDMSEENINFLKEQSKKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELSIIKM 358
>gi|416349856|ref|ZP_11680683.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C
str. Stockholm]
gi|338196469|gb|EGO88661.1| DNA polymerase III subunits gamma and tau [Clostridium botulinum C
str. Stockholm]
Length = 541
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 112/356 (31%), Positives = 197/356 (55%), Gaps = 18/356 (5%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L ++++P F+E++GQ + +L N + RIA YLF G RGTGKTSTAKIFS A+NC
Sbjct: 5 ALYREWRPRTFEEVVGQEHITLTLKNQMKNNRIAHAYLFCGTRGTGKTSTAKIFSKAVNC 64
Query: 520 VATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
+ +PC C C +G + + E+D + +D +R +++ + P ++KV
Sbjct: 65 LNPQDGEPCNECDMCKKINAGLAIDVSEMDAASHNKVDDIRDLIEEVK--YPPREGKYKV 122
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+++DE H+L AFLK LEEPP++VVFI TTD +P +I SRCQ++ F +IK D
Sbjct: 123 YIMDEAHMLTQGAVNAFLKTLEEPPEKVVFILATTDPQKLPITILSRCQRFDFKRIKSDD 182
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELVG 698
I RL KI+ E+ + + +L LIA +DG++RDA ++LDQ +S+ ++ V ++G
Sbjct: 183 IFERLIKITKEQGIFADNKSLSLIARMSDGAMRDALSILDQAISMGNGKVDYDQVINMLG 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVD---------------PMVLMSQLAS 743
+V+ + LL+L + D +++ +++ +G D MV +SQ
Sbjct: 243 LVTNDNLLKLTNTIIDKDIENSIRIIDDVVYAGKDINLFIKDMIHHMRNLMMVKVSQNPE 302
Query: 744 LIMDIIAGTYTIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
++D+ + +E + +++L E E+Q + S + + +++++
Sbjct: 303 DVLDMSEENINFLKEQSKKIRIEEIMRCIRILQECEEQSKWSKQGRIYLELSIIKM 358
>gi|421540698|ref|ZP_15986840.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
93004]
gi|402318248|gb|EJU53772.1| DNA polymerase III, subunit gamma and tau [Neisseria meningitidis
93004]
Length = 709
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/295 (33%), Positives = 166/295 (56%), Gaps = 9/295 (3%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+PCG C C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NAQHGEPCGVCESCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ LG ++ V +++G
Sbjct: 184 ADHLAHVLDSEKIAYEPAALQLLGRAAAGSMRDALSLLDQAIALGSGKVAEQDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRAREL------MDSGVDPMVLMSQLASLIMDI 748
V ++ L ELL ++ D+A +A+E+ D+ + + ++ Q +LI +
Sbjct: 244 VDKQYLYELLTGIINQDSAALTAKAQEMAACAVGFDNALGELAILLQHLALIQAV 298
>gi|417958329|ref|ZP_12601244.1| DNA polymerase III subunits gamma and tau [Neisseria weaveri ATCC
51223]
gi|343966987|gb|EGV35238.1| DNA polymerase III subunits gamma and tau [Neisseria weaveri ATCC
51223]
Length = 770
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 115/366 (31%), Positives = 193/366 (52%), Gaps = 23/366 (6%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +L+GQ VV++L N + GR+ YL G RG GKT+ A+I + +LNC
Sbjct: 6 LARKWRPKTFADLVGQEHVVKALRNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+ +PCG C+ C +G+ + +E+D + G+D +R +L++ P+A ++KV+
Sbjct: 66 NANHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYA-PTAG-KYKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L + A LK LEEPP+ V FI TTD VP ++ SRC +++ + +
Sbjct: 124 IIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPITVLSRCLQFVLRNMTTQQV 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
L + E + EP AL L+ A GS+RDA ++LDQ +G +T V +++G
Sbjct: 184 ADHLAHVLTVEQIPFEPPALQLLGRAAMGSMRDALSLLDQAIAMGSGSVTEHDVRQMIGA 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759
V + L ELL+ ++ D E +++A+E+ + +S+LA +++ +A T+
Sbjct: 244 VDKRYLYELLQGIVNQDGEELLRKAQEMAARAIGFDNALSELA-MLLQRLALAKTVPAAI 302
Query: 760 LTEAELERLKHALKLLSEAEKQLR------------LSSERCTWFTATLLQL-------G 800
+ E E L + LS + QL L+ + F TLL++
Sbjct: 303 ADDPEHETLLRLSQYLSGEQIQLYYQCAIHGKQDLSLAPDEYAGFVMTLLRMLAFAPIAA 362
Query: 801 SMHSPD 806
H PD
Sbjct: 363 KAHDPD 368
>gi|160914821|ref|ZP_02077035.1| hypothetical protein EUBDOL_00829 [Eubacterium dolichum DSM 3991]
gi|158433361|gb|EDP11650.1| DNA polymerase III, subunit gamma and tau [Eubacterium dolichum DSM
3991]
Length = 593
Score = 194 bits (494), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 110/354 (31%), Positives = 194/354 (54%), Gaps = 16/354 (4%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + Y+P FDE+ GQ +V++L N + + +IA YLF GPRGTGKTS AKIF+ +N
Sbjct: 10 KALYRTYRPNSFDEVAGQKHIVKTLQNAVEQNKIAHAYLFCGPRGTGKTSIAKIFAKVIN 69
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C + + KPC C C +G + +E+D + G++ VR +++ + ++K
Sbjct: 70 C-ESKEHKPCLQCDNCLAVQNGSHPDIIEIDAASNNGVEEVRNLIEKVKYA--PLKGKYK 126
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H++ + + A LK +EEPP+ V+FI TT+ V +I SRCQ++ F K+
Sbjct: 127 VYIIDEVHMMSAGAFNALLKTIEEPPEHVIFILATTEPHKVLPTIISRCQRFDFTKVPKN 186
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
+IV+R+ I +E++ + D ++LIA ADG LRDA ++LDQ ++ I +NE+
Sbjct: 187 EIVSRIHTILEKEHIECDDDVIELIAQLADGGLRDALSILDQCIAYATNHIELQHINEIY 246
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGG 757
G+ + ++ ++L +++ + + +++ G+D L L L+ + I YT
Sbjct: 247 GITTVQEKMKLFHHIFNNEPVDLMDMLDGMLEKGLDIPRLTVDLIELLKESIIFEYTKDS 306
Query: 758 RSL------------TEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQL 799
L T L+ + LL + ++ R +S ++F LL++
Sbjct: 307 SLLHSLSNEQAVEFITSKSLKARFEMIHLLMDTYEKYRFASNVGSYFEVCLLEM 360
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,434,545,522
Number of Sequences: 23463169
Number of extensions: 838518702
Number of successful extensions: 2907457
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7284
Number of HSP's successfully gapped in prelim test: 4476
Number of HSP's that attempted gapping in prelim test: 2849804
Number of HSP's gapped (non-prelim): 38341
length of query: 1268
length of database: 8,064,228,071
effective HSP length: 155
effective length of query: 1113
effective length of database: 8,722,404,172
effective search space: 9708035843436
effective search space used: 9708035843436
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 83 (36.6 bits)