BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000818
(1268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 13 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 72
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 73 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 130
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 131 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 190
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 191 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 230
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 163 bits (413), Expect = 5e-40, Method: Composition-based stats.
Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 28 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 88 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 145
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 146 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 205
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 245
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 163 bits (412), Expect = 6e-40, Method: Composition-based stats.
Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 163 bits (412), Expect = 7e-40, Method: Composition-based stats.
Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 9 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 68
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 69 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 126
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 127 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 186
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 187 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 226
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 163 bits (412), Expect = 7e-40, Method: Composition-based stats.
Identities = 85/220 (38%), Positives = 129/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 223
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 161 bits (408), Expect = 2e-39, Method: Composition-based stats.
Identities = 84/220 (38%), Positives = 128/220 (58%), Gaps = 2/220 (0%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 28 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 87
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 88 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 145
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ T D +P +I SRC ++ + I
Sbjct: 146 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALDVEQI 205
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ 680
+L I EE++ EP AL L+A A+GSLRDA ++ DQ
Sbjct: 206 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQ 245
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/282 (26%), Positives = 122/282 (43%), Gaps = 24/282 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++GQ +V+ L + + G + P LF GP G GKT+ A
Sbjct: 17 EKYRPQRLDDIVGQEHIVKRLKHYVKTGSM-PHLLFAGPPGVGKTTAA------------ 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
RE F NF+E++ ++++G++ +R +K + P FK+ +
Sbjct: 64 -----LALAREL--FGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFL 116
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L A + +E V FI + IQSRC + F ++D DI
Sbjct: 117 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAK 176
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXX 702
RLR I+ E L + + L I A+G +R A +L + L K+IT V
Sbjct: 177 RLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMVASRARP 236
Query: 703 XXXXXXXXXAMSSDTAETVKRARELM----DSGVDPMVLMSQ 740
A+ + + ++ RE++ SG D +V M +
Sbjct: 237 EDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHK 278
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 94.4 bits (233), Expect = 4e-19, Method: Composition-based stats.
Identities = 61/231 (26%), Positives = 105/231 (45%), Gaps = 20/231 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE++GQ+ V+Q L + R I P LF GP GTGKT+TA + L
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIALARDL----- 62
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
F NF+E++ ++++G+D VR+ +K + P FK+ +
Sbjct: 63 --------------FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFL 108
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L + A + +E + FI + + IQSRC + F + +
Sbjct: 109 DEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLV 693
RL +I +E + + D L+ + + G R A L + +G+ + + +
Sbjct: 169 RLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTI 219
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 115/267 (43%), Gaps = 24/267 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE++GQ+ V+Q L + R I P LF GP GTGKT+TA + L
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIALARDL----- 62
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
F NF+E++ ++++G+D VR+ +K + P FK+ +
Sbjct: 63 --------------FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFL 108
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L + A + +E + FI + + IQSRC + F + +
Sbjct: 109 DEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKK 168
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNXXXXXXXX 702
RL +I +E + + D L+ + + G R A L + +G+ + + +
Sbjct: 169 RLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQITATARP 228
Query: 703 XXXXXXXXXAMSSDTAETVKRARELMD 729
A+ + E AREL+D
Sbjct: 229 EEMTELIQTALKGNFME----ARELLD 251
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 77/295 (26%), Positives = 121/295 (41%), Gaps = 35/295 (11%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ V L T+ + P LF GP GTGKTST I +
Sbjct: 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTST--ILALTKELYGP 85
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH---LSAGLPSAS----- 574
D K SR +E++ ++++G+ VR +K+ L+ PS
Sbjct: 86 DLMK---------------SR-ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENY 129
Query: 575 --PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
P +K+ ++DE + + A + +E F I + + + S+C K+ F
Sbjct: 130 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRF 189
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS----LL--GK 686
+ + + RLR IS +EN+ + L+ I + G LR T+L S L GK
Sbjct: 190 KALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGK 249
Query: 687 RITSSLVNXXXXXXXXXXXXXXXXXAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
ITS+ V S D E K M SG +++QL
Sbjct: 250 NITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 24/212 (11%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ GQN V+ ++ + G++ P LF GP GTGKTST
Sbjct: 17 EKYRPETLDEVYGQNEVITTVRKFVDEGKL-PHLLFYGPPGTGKTSTI------------ 63
Query: 523 DQTKPCGYCRECNDFISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
RE I GK S +E++ ++ +G+D VR +K ++ S FK+
Sbjct: 64 -----VALARE----IYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLI 114
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E + F + + ++ S+C ++ F + I
Sbjct: 115 ILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAI 174
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLR 672
R+ + E L + P+A + ++G +R
Sbjct: 175 ERRIANVLVHEKLKLSPNAEKALIELSNGDMR 206
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 96/215 (44%), Gaps = 25/215 (11%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++G + L G + P + G G GKT++ ++C+A
Sbjct: 13 EKYRPQVLSDIVGNKETIDRLQQIAKDGNM-PHMIISGMPGIGKTTS-------VHCLAH 64
Query: 523 DQTKPCGYCRECNDFISGKSR--NFMEVDGTNKKGLDRVRYILKHLSAGLPSASP-RFKV 579
+ + G+S +E++ ++ +G+D VR +KH + P + K+
Sbjct: 65 E--------------LLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKI 110
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
++DE + + A + +E F F + + +QS+C ++K+ D D
Sbjct: 111 VILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDED 170
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDA 674
++ RL +I E++ D L+ I A+G +R A
Sbjct: 171 VLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQA 205
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 86/205 (41%), Gaps = 38/205 (18%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L QKY+P DE I ++ + S+G+I + L GTGKT+ AK
Sbjct: 16 LEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK--------- 66
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
C + N + M V+G++ K +D VR L + ++ S R KV
Sbjct: 67 --------ALCHDVN-------ADMMFVNGSDCK-IDFVRGPLTNFASA-ASFDGRQKVI 109
Query: 581 VIDECH---LLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
VIDE L S+ L F+E I +ID + + +QSRC+ F + D
Sbjct: 110 VIDEFDRSGLAESQRHLR--SFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTD 167
Query: 638 GD-------IVARLRKISAEENLNV 655
D ++ RL +I E + +
Sbjct: 168 EDKIEMMKQMIRRLTEICKHEGIAI 192
>pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXI|E Chain E, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|J Chain J, Adp Bound E. Coli Clamp Loader Complex
pdb|1A5T|A Chain A, Crystal Structure Of The Delta Prime Subunit Of The Clamp-
Loader Complex Of Escherichia Coli Dna Polymerase Iii
pdb|3GLF|E Chain E, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|J Chain J, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLG|E Chain E, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|J Chain J, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLH|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|O Chain O, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLI|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 334
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
+ LV + GR L Q G G + S L C K CG+CR C +G
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAG 71
Query: 541 KSRNFMEV---DGTNKKGLDRVRYILKHLS--AGLPSASPRFKVFVIDECHLLPSKTWLA 595
++ + G N G+D VR + + L+ A L A KV + + LL A
Sbjct: 72 THPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGA----KVVWVTDAALLTDAAANA 127
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
LK LEEPP F T + + + +++SRC+
Sbjct: 128 LLKTLEEPPAETWFFLATREPERLLATLRSRCR 160
>pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|J Chain J, Atpgs Bound E. Coli Clamp Loader Complex
Length = 334
Score = 46.6 bits (109), Expect = 9e-05, Method: Composition-based stats.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 9/153 (5%)
Query: 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISG 540
+ LV + GR L Q G G + S L C K CG+CR C +G
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGXGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLXQAG 71
Query: 541 KSRNFMEV---DGTNKKGLDRVRYILKHLS--AGLPSASPRFKVFVIDECHLLPSKTWLA 595
++ + G N G+D VR + + L+ A L A KV + + LL A
Sbjct: 72 THPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGA----KVVWVTDAALLTDAAANA 127
Query: 596 FLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQ 628
LK LEEPP F T + + + +++SRC+
Sbjct: 128 LLKTLEEPPAETWFFLATREPERLLATLRSRCR 160
>pdb|2GNO|A Chain A, Crystal Structure Of A Dna Polymerase Iii, Gamma
Subunit-Related Protein (Tm0771) From Thermotoga
Maritima Msb8 At 2.00 A Resolution
Length = 305
Score = 37.0 bits (84), Expect = 0.078, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 541 KSRNFMEVDGTNKK-GLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKF 599
K+ + +E+D + G+D +R I L+ P R K ++ +C + AFLK
Sbjct: 48 KASDVLEIDPEGENIGIDDIRTIKDFLNYS-PELYTR-KYVIVHDCERXTQQAANAFLKA 105
Query: 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
LEEPP+ V + T + +I+SR + + N K+
Sbjct: 106 LEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE 143
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 473 LIGQNIVVQSLVNTISRGRIA------PV--YLFQGPRGTGKTSTAKIFSAAL 517
++GQ+ ++++ + I R R P+ +LF GP G GKT AK +A L
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612
>pdb|2XZL|A Chain A, Upf1-Rna Complex
Length = 802
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%)
Query: 485 NTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRN 544
N +S P+ L QGP GTGKT T+ L+ + D+ C D ++ K R+
Sbjct: 367 NAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426
Query: 545 F 545
Sbjct: 427 L 427
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 34.3 bits (77), Expect = 0.43, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 473 LIGQNIVVQSLVNTISRGRIA------PV--YLFQGPRGTGKTSTAKIFSAAL 517
++GQ+ ++++ + I R R P+ +LF GP G GKT AK +A L
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 68
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 34.3 bits (77), Expect = 0.45, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 473 LIGQNIVVQSLVNTISRGRIA------PV--YLFQGPRGTGKTSTAKIFSAAL 517
++GQ+ ++++ + I R R P+ +LF GP G GKT AK +A L
Sbjct: 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 80/188 (42%), Gaps = 35/188 (18%)
Query: 458 IRSLSQKYKPIFFDELIGQNIVVQS---LVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+ L+ + +P + IGQ ++ + L I G + + L+ GP GTGKT+ A++ +
Sbjct: 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIA 71
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
Y + IS + E+ ++ ++R R ++ +AG
Sbjct: 72 R--------------YANADVERISAVTSGVKEI----REAIERAR---QNRNAG----- 105
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDN--VPRSIQSRCQKYLF 632
R + +DE H AFL +E+ + FI TT+ + + ++ SR + YL
Sbjct: 106 -RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLL 162
Query: 633 NKIKDGDI 640
+ DI
Sbjct: 163 KSLSTEDI 170
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 33.1 bits (74), Expect = 0.98, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G GKT+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFSAAL 517
Q +P DE IGQ V + L + RG + L GP G G+T+ A I ++ L
Sbjct: 17 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGRTTLAHIIASEL 75
>pdb|3U73|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant In Complex
With Atf
pdb|3U74|U Chain U, Crystal Structure Of Stabilized Human Upar Mutant
Length = 283
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1078 GNSEISSTKGRRQEIPMQRIESIIREQRLE--TAWLQATEKGAPGSLGHLR 1126
G+S++S +GR Q + + E EQ L+ T W+Q E+G P HLR
Sbjct: 99 GSSDMSCERGRHQSLQCRSPE----EQCLDVVTHWIQEGEEGRPKDDRHLR 145
>pdb|3BT1|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
pdb|3BT2|U Chain U, Structure Of Urokinase Receptor, Urokinase And Vitronectin
Complex
Length = 283
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1078 GNSEISSTKGRRQEIPMQRIESIIREQRLE--TAWLQATEKGAPGSLGHLR 1126
G+S++S +GR Q + + E EQ L+ T W+Q E+G P HLR
Sbjct: 101 GSSDMSCERGRHQSLQCRSPE----EQCLDVVTHWIQEGEEGRPKDDRHLR 147
>pdb|2FD6|U Chain U, Structure Of Human Urokinase Plasminogen Activator In
Complex With Urokinase Receptor And An Anti-Upar Antibody
At 1.9 A
Length = 276
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1078 GNSEISSTKGRRQEIPMQRIESIIREQRLE--TAWLQATEKGAPGSLGHLR 1126
G+S++S +GR Q + + E EQ L+ T W+Q E+G P HLR
Sbjct: 100 GSSDMSCERGRHQSLQCRSPE----EQCLDVVTHWIQEGEEGRPKDDRHLR 146
>pdb|2I9B|E Chain E, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|F Chain F, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|G Chain G, Crystal Structure Of Atf-urokinase Receptor Complex
pdb|2I9B|H Chain H, Crystal Structure Of Atf-urokinase Receptor Complex
Length = 279
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 1078 GNSEISSTKGRRQEIPMQRIESIIREQRLE--TAWLQATEKGAPGSLGHLR 1126
G+S++S +GR Q + + E EQ L+ T W+Q E+G P HLR
Sbjct: 101 GSSDMSCERGRHQSLQCRSPE----EQCLDVVTHWIQEGEEGRPKDDRHLR 147
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 466 KPIFFDELIGQNIVVQSLVNTIS----RGRIAPVYLFQGPRGTGKTSTAKIFS 514
+P FD IGQ + ++L I+ R LF GP G GKT+ A I S
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIIS 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,510,083
Number of Sequences: 62578
Number of extensions: 1180956
Number of successful extensions: 2142
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2103
Number of HSP's gapped (non-prelim): 36
length of query: 1268
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1158
effective length of database: 8,089,757
effective search space: 9367938606
effective search space used: 9367938606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)