BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000818
(1268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P09122|DPO3X_BACSU DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain
168) GN=dnaX PE=3 SV=3
Length = 563
Score = 187 bits (474), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 165/292 (56%), Gaps = 3/292 (1%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
++L + ++P F++++GQ + ++L N + + + + YLF GPRGTGKTS AKIF+ A+N
Sbjct: 4 QALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVN 63
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C +PC C C +G + +E+D + G+D +R I + PSA +K
Sbjct: 64 CEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFA-PSAV-TYK 121
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V++IDE H+L + A LK LEEPP+ +FI TT+ +P +I SRCQ++ F +I
Sbjct: 122 VYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQ 181
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQ-LSLLGKRITSSLVNELV 697
IV R+ KI E L VE +L++IA ADG +RDA ++LDQ +S G + +
Sbjct: 182 AIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLIT 241
Query: 698 GVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDII 749
G VS+ + +L + + ++ ++ EL+ G DP L+ + D++
Sbjct: 242 GAVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
>sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1
Length = 370
Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats.
Identities = 96/290 (33%), Positives = 171/290 (58%), Gaps = 3/290 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N L++K++P F+++IGQ +V ++ N++ GRI +LF G RGTGKT+ A+I + +
Sbjct: 2 NYHILAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC PC C C + G + EVD ++ ++ ++ +L ++ LPS R
Sbjct: 62 LNCKLGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRY-LPSKG-R 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+++IDE H+L ++ LK +EEPPQ + FI TT+++ +P +I SRC ++ I
Sbjct: 120 FKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPIN 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+IVA + I +EN+ E AL LI+ ++GSLRDA T+ +Q+ +GK IT +V +
Sbjct: 180 LNEIVACISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRK 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLI 745
+G++ E+++L +L ++ D V + + D+ ++ ++ ++ L+
Sbjct: 240 TLGMLYEDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLL 289
>sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=dnaX PE=3 SV=2
Length = 642
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 97/289 (33%), Positives = 162/289 (56%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+L I EE++ EP AL L++ ADGSLRDA ++ DQ G ++++ V+ ++G
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ +++ L L+E + ++ + E G++ L+ ++ SL+ I
Sbjct: 244 LDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRI 292
>sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae
(strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1
Length = 681
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/436 (28%), Positives = 215/436 (49%), Gaps = 42/436 (9%)
Query: 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALN 518
+ L QKY+P F + +GQ+ + + +VN I++ ++ Y+F G RGTGKT+ AKI + A+N
Sbjct: 3 KVLYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAIN 62
Query: 519 CVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFK 578
C+ + C C C S + + E+D +K G++ +R + +++ LP + K
Sbjct: 63 CLNWNGDV-CNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENV-FNLPFKFKK-K 119
Query: 579 VFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDG 638
V+++DE H+L ++W LK LEE P V+FIF TT+ + +P +I SRCQ + F +I +
Sbjct: 120 VYILDEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITND 179
Query: 639 DIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSL--VNEL 696
I RL +++A+E++ + DAL +A A GSLRD ++LDQ+S + T SL V +
Sbjct: 180 LIQQRLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKT 239
Query: 697 VGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIG 756
++ +E+ +E +S D ++ G++ + + +L +L +D+ G G
Sbjct: 240 FNLLDKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDLY-GYVKTG 298
Query: 757 GRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM-------------- 802
++ + + + L+ + L + E T + + L L
Sbjct: 299 QIAVVKPSDQTMAAKLRFHPKQYALLVQAIEANTGYGPSQLSLSDQIKAIVIHYNNAVSK 358
Query: 803 --HSPDL-----TQSGSSRRQSSRTTEE-DPSSTSREAVVYKRMSGPQY----------- 843
H P TQS + S+T EE P ++E V+YK + P+
Sbjct: 359 EPHIPAYTPVVQTQSPAKEHVPSKTVEEAKPQLPAKEPVLYKVIEEPKVSSFVKDPVASK 418
Query: 844 ---MPQNAVSPASLRE 856
PQ V P + +E
Sbjct: 419 LIEQPQTIVQPEAQQE 434
>sp|P06710|DPO3X_ECOLI DNA polymerase III subunit tau OS=Escherichia coli (strain K12)
GN=dnaX PE=1 SV=1
Length = 643
Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 3/289 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ V+ +L N +S GRI YLF G RG GKTS A++ + LNC
Sbjct: 6 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C + G+ + +E+D ++ ++ R +L ++ A RFKV+
Sbjct: 66 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA--PARGRFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNELVGV 699
+L I EE++ EP AL L+A A+GSLRDA ++ DQ G ++++ V+ ++G
Sbjct: 184 RHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLGT 243
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDI 748
+ +++ L L+E + ++ + E G++ L+ ++ L+ I
Sbjct: 244 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRI 292
>sp|P47658|DPO3X_MYCGE DNA polymerase III subunit gamma/tau OS=Mycoplasma genitalium
(strain ATCC 33530 / G-37 / NCTC 10195) GN=dnaX PE=3
SV=3
Length = 597
Score = 173 bits (439), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/292 (33%), Positives = 166/292 (56%), Gaps = 4/292 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
QKY+PI F + +GQ + + LVN I+R ++ Y+F G RGTGKT+ AKI + A+NC+
Sbjct: 5 FYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAINCL 64
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
DQ C C C + + + +E+D +K G++ +R +++++ P + KV+
Sbjct: 65 NWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNH-PFTFKK-KVY 122
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE H+L +++W LK LEE P V+FIF TT+ + +P +I SRCQ + F KI I
Sbjct: 123 ILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDLI 182
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVG 698
+ RL I+ +E + +E DAL IA + GSLRD ++LDQ+S ++I+ + V +
Sbjct: 183 LERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTFN 242
Query: 699 VVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIA 750
+V ++ +S D E + +G++ + +L +L +++ A
Sbjct: 243 IVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYA 294
>sp|Q8K983|DPO3X_BUCAP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaX PE=3 SV=1
Length = 363
Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 3/266 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++K++P F ++IGQ +V+++ N S G+I +L G RG GKT+ A++ + +
Sbjct: 2 NYQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + PC C C + G +F+E+D ++ ++ +R IL ++ PS S R
Sbjct: 62 LNCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYY-TPSKS-R 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L ++ A LK LEEPPQ + FI TTD++ +P++I+SRC + N +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+ DI L+ I + N + +AL +I+ A+GS+RDA +L+ L K I E
Sbjct: 180 EEDIFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTE 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETV 721
++G+ +++ L + + D+ + +
Sbjct: 240 MLGIPNKKHAFLLTKFLLEQDSKKMM 265
>sp|P43746|DPO3X_HAEIN DNA polymerase III subunit tau/gamma OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaX PE=3
SV=1
Length = 688
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 144/250 (57%), Gaps = 3/250 (1%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L++K++P F +++GQ ++ +L N + R+ YLF G RG GKTS A++F+ LNCV
Sbjct: 6 LARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGLNCV 65
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
PCG C C G + +E+D ++ ++ R +L ++ P RFKV+
Sbjct: 66 HGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYK-PVVG-RFKVY 123
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+IDE H+L ++ A LK LEEPP+ V F+ TTD +P +I SRC ++ + + I
Sbjct: 124 LIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQI 183
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKR-ITSSLVNELVGV 699
L I +EN+ E AL +A A GS+RD+ ++ DQ +G R +T+++V+ ++G+
Sbjct: 184 SQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLGL 243
Query: 700 VSEEKLLELL 709
+ + +++L
Sbjct: 244 LDDNYSVDIL 253
>sp|P57553|DPO3X_BUCAI DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaX PE=3 SV=1
Length = 361
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 157/278 (56%), Gaps = 3/278 (1%)
Query: 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAA 516
N + L++K++P +F ++IGQ +V ++ N +S GRI +L G RG GKT+ A++ + +
Sbjct: 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKS 61
Query: 517 LNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPR 576
LNC + PC C C + G + +E+DG ++ ++ +R IL S R
Sbjct: 62 LNCQNGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILD--SIYYSPIKSR 119
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FKV++IDE H+L ++ A LK LEEPP+ V F+ TTD+D +P++I SRC + I
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIIS 179
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-RITSSLVNE 695
+ I L+ I +E+++ + +L IA +A GS+RDA +L+ LG + V +
Sbjct: 180 EEKIFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTD 239
Query: 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVD 733
++G++ E+ L + + D+ +T+ ++ GV+
Sbjct: 240 MLGLLPEKYSFLLTDAVLKKDSKKTMLLLNKISSIGVE 277
>sp|P63975|DPO3X_MYCTU DNA polymerase III subunit gamma/tau OS=Mycobacterium tuberculosis
GN=dnaX PE=3 SV=1
Length = 578
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 8/295 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E++GQ V L + GRI YLF GPRG GKTS+A+I + +LNC
Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
PCG C C S + +E+D + G+D R L+ + P S R+
Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPVQS-RY 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DE H++ + + A LK +EEPP+ ++FIF TT+ + V +I+SR Y F +
Sbjct: 120 RVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+ A L +I +E + V+ L+ GS RD ++LDQL L G T +
Sbjct: 180 RTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRAL 238
Query: 698 GV--VSEEKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII 749
G+ V++ L++ A+++ A + A E ++D G DP + L D+I
Sbjct: 239 GLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLI 293
>sp|P63976|DPO3X_MYCBO DNA polymerase III subunit gamma/tau OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=dnaX PE=3 SV=1
Length = 578
Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 154/295 (52%), Gaps = 8/295 (2%)
Query: 460 SLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNC 519
+L +KY+P F E++GQ V L + GRI YLF GPRG GKTS+A+I + +LNC
Sbjct: 2 ALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61
Query: 520 VATDQTKPCGYCRECNDFISGK--SRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRF 577
PCG C C S + +E+D + G+D R L+ + P S R+
Sbjct: 62 AQGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRE-LRDRAFYAPVQS-RY 119
Query: 578 KVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKD 637
+VF++DE H++ + + A LK +EEPP+ ++FIF TT+ + V +I+SR Y F +
Sbjct: 120 RVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPP 179
Query: 638 GDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELV 697
+ A L +I +E + V+ L+ GS RD ++LDQL L G T +
Sbjct: 180 RTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYTRAL 238
Query: 698 GV--VSEEKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDII 749
G+ V++ L++ A+++ A + A E ++D G DP + L D+I
Sbjct: 239 GLLGVTDVALIDDAVDALAACDAAALFGAIESVIDGGHDPRRFATDLLERFRDLI 293
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 24/275 (8%)
Query: 455 LENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFS 514
+EN +KY+P DE++GQ+ V+Q L + R I P LF GP GTGKT+TA +
Sbjct: 1 MENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNI-PHLLFSGPPGTGKTATAIALA 59
Query: 515 AALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS 574
L F NF+E++ ++++G+D VR+ +K + P
Sbjct: 60 RDL-------------------FGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGG 100
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
FK+ +DE L + A + +E + FI + + IQSRC + F
Sbjct: 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVN 694
+ + RL +I +E + + D L+ + + G R A L + +G+ + + +
Sbjct: 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIY 220
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMD 729
++ E++ EL++ A+ + E AREL+D
Sbjct: 221 QITATARPEEMTELIQTALKGNFME----ARELLD 251
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 76/277 (27%), Positives = 143/277 (51%), Gaps = 27/277 (9%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P DE++ Q +V L + + R P LF GP GTGKT+ A +C+A
Sbjct: 14 AEKYRPKTLDEIVDQEEIVSRLKQFV-KERNMPHLLFAGPPGTGKTTAA-------HCLA 65
Query: 522 TDQTKPCGYCRECNDFISGKSRNFM-EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+D R +M E++ ++++G+D +R +K + +A+ FK+
Sbjct: 66 -------------HDLFGENYRQYMLELNASDERGIDVIRSKVKEFARTRVAANIPFKIV 112
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E FI I + IQSRC + F +K D+
Sbjct: 113 LLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDV 172
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
++RL+ I+ +E + ++ +AL+ I ++G +R A +L + LGK +T V ++VG+
Sbjct: 173 ISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAALGK-VTVDSVYKVVGLA 231
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMD----SGVD 733
++ ++++LA++ + + ++ RELM SGVD
Sbjct: 232 HPREIRQMIQLALAGNFNDAREKLRELMINYGLSGVD 268
>sp|Q2FQT9|RFCS_METHJ Replication factor C small subunit OS=Methanospirillum hungatei
(strain JF-1 / DSM 864) GN=rfcS PE=3 SV=1
Length = 323
Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 132/280 (47%), Gaps = 21/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++IGQ +++ L + +++ R P LF G GTGKT+ A
Sbjct: 10 EKYRPRVLEDIIGQQEIIERLRSYVAK-REMPHLLFTGNAGTGKTTAA------------ 56
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
RE F NF E++ ++++G+D VR +K + P FK+ +
Sbjct: 57 -----VALAREF--FGEDWQMNFRELNASDERGIDVVRNQIKQFARTSPFGGSTFKILFL 109
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L + A + +E Q FI + IQSRC Y F + +
Sbjct: 110 DEADALTTDAQSALRRTMETYAQTCRFILSCNYSAKIIDPIQSRCAIYRFRPLGRQAVSE 169
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
+++ISA++NL V + +D I A G +R A L ++LG+ I+ ++ +
Sbjct: 170 MVKRISADQNLTVTEEVIDAIFYVAQGDMRKAINALQGAAILGRDISPDMIFAITATARP 229
Query: 703 EKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQL 741
E++ +L++L+++ + + L+ D G+ P L+SQL
Sbjct: 230 EEIDDLIDLSLAGNFLGAGSSLQALLHDRGIAPQELISQL 269
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 72/267 (26%), Positives = 123/267 (46%), Gaps = 23/267 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++ Q VV+ L + + R P LF GP GTGKT+ A +
Sbjct: 11 EKYRPRSLDDIVDQKHVVERLKQFVKQ-RNMPHLLFAGPPGTGKTTAAHALA-------- 61
Query: 523 DQTKPCGYCRECNDFISGKSRNFM-EVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+D R +M E++ ++++G++ +R +K + FK+ +
Sbjct: 62 ------------HDLFGENYRQYMLELNASDERGINVIREKVKEFARSRTPPEIPFKIVL 109
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE + S A + +E FI I + IQSRC + F + D++
Sbjct: 110 LDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVI 169
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
RLR I+ E ++ E +ALD I ++G +R A +L S LGK +T V +VG+
Sbjct: 170 ERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYLGK-VTVDAVYRVVGMAK 228
Query: 702 EEKLLELLELAMSSDTAETVKRARELM 728
++ E+L A+ D R++M
Sbjct: 229 PREVREMLATALKGDFTAARSLLRKIM 255
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 70/266 (26%), Positives = 125/266 (46%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V++ + RG P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLE-EVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + + + I SRC + F+ + +
Sbjct: 108 DEADNMTSDAQQALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAE 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR I+ E + + DA+DLI ++G +R A +L + K + ++ V ++
Sbjct: 168 RLRHIAKSEGIELRDDAIDLIYEVSEGDMRKAINLLQVAAATSKVVDANAVASATTMIRP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
++EL LA + D + ++ RELM
Sbjct: 228 ADVVELFNLAFNGDVTKAREKLRELM 253
>sp|A7I8Y0|RFCS_METB6 Replication factor C small subunit OS=Methanoregula boonei (strain
6A8) GN=rfcS PE=3 SV=1
Length = 322
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 23/280 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P +++GQ+ +V+ L + + G + P LF G G GKT+ A +
Sbjct: 10 EKYRPAKLADIVGQDDIVERLSSYVKSGNL-PHLLFTGSAGVGKTTAAVTLA-------- 60
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
RE F NF E++ ++++G+D VR +K + P+ FK+ +
Sbjct: 61 ---------REF--FGDSWQMNFRELNASDERGIDVVRNQIKEFARTRPAGDAAFKILFL 109
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L + A + +E + FI + IQSRC Y F + +
Sbjct: 110 DEADALTTDAQAALRRTMESYAKTCRFILSCNYSSKIIDPIQSRCAIYRFRPLGPQAVKE 169
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
+ +I+A E+L+V P+A+D + A G +R A L ++L I + +V +
Sbjct: 170 EITRIAAREHLDVTPEAMDAMVYIAQGDMRKAINALQGAAILSATIEAPMVYAITSNARP 229
Query: 703 EKLLELLELAMSSDT--AETVKRARELMDSGVDPMVLMSQ 740
E++ ELL L++S D AE + R L + G+ P L++Q
Sbjct: 230 EEIGELLTLSLSGDFDGAEALL-TRLLRERGIAPNELINQ 268
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 71/266 (26%), Positives = 125/266 (46%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V L + G + P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSGNM-PHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + + + I SRC + F+ + +
Sbjct: 108 DEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAE 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RL+ I+ E + V+ DA+DLI ++G +R A +L + K + ++V +
Sbjct: 168 RLKYIAKSEGVEVKEDAIDLIYELSEGDMRKAINILQVAAATNKIVDRNVVAAAAAAIRP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
++EL LA+S D + ++ RELM
Sbjct: 228 TDIVELFNLALSGDYLKAREKMRELM 253
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 75/280 (26%), Positives = 130/280 (46%), Gaps = 21/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V L + G + P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKSRLREFVKSGNM-PHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + I + IQSR FN + +++
Sbjct: 108 DEADNMTSDAQQALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVIS 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR I+ E + + DAL+ I G +R A L + K IT +V +G+VS
Sbjct: 168 RLRYIAENEGVKISDDALETIYEFTQGDMRKAINALQIAAATEKEITEDVVARALGMVSP 227
Query: 703 EKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQL 741
L E L+ A+ + ++ + + ++D GV + ++ Q+
Sbjct: 228 RLLRETLQEALKGNFSKAMTQIYGFVVDGGVGELEIIRQI 267
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 128/275 (46%), Gaps = 24/275 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE++ Q +V+ L + + + P LF GP GTGKT+ A + L
Sbjct: 8 EKYRPRSLDEIVDQEEIVKRLKEFV-KNKNMPHLLFAGPPGTGKTTAALALAHDL----- 61
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y D N +E++ ++++G+D +R +K + LP FK+ ++
Sbjct: 62 -------YGESWRD-------NTLELNASDERGIDVIRSRIKDYARTLPIGDVPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + A + +E + FI I + IQSRC + F + GD
Sbjct: 108 DEADNMTGDAQQALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQ 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR I+ +E + V+ AL+ I + G LR A L S + + +T +V +G V
Sbjct: 168 RLRWIAQQEGITVDDGALEAIWEESQGDLRKAINTLQAASAISRNVTEEVVYAALGRVKP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELMD----SGVD 733
+++ E++E A+ + E + R L+ SGVD
Sbjct: 228 KEVREMIESALKGNLLEARDKLRLLLYNYGLSGVD 262
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 24/269 (8%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P +++IG + + L++ + G + P LF GP G GKT+ A
Sbjct: 8 TEKYRPRRLEDVIGHQQITRRLISYVKSGNL-PHLLFSGPPGVGKTACA----------- 55
Query: 522 TDQTKPCGYCRECNDFISGKS--RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKV 579
RE + G++ NF+E++ ++++G+D VR +K+ + P +FK+
Sbjct: 56 ------VALARE----LYGETWHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAKFKI 105
Query: 580 FVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGD 639
+DE L S A + +E FI + IQSRC Y F + D
Sbjct: 106 IFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATD 165
Query: 640 IVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
I + +I+ E L +E D +D + A G +R A L + + K IT+ ++ +
Sbjct: 166 ITTGITRIAKNEGLKIEKDGMDALIYVARGDMRRAINALQSAATIAKDITADVIYQTTST 225
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELM 728
+++ ++L+LA++ ++ + EL+
Sbjct: 226 AKPKEIEDMLKLALNGQFMDSRNKLDELL 254
>sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Methanoculleus marisnigri
(strain ATCC 35101 / DSM 1498 / JR1) GN=rfcS PE=3 SV=1
Length = 322
Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 76/279 (27%), Positives = 121/279 (43%), Gaps = 21/279 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE++GQ +V L + + G + P LF G G GKT+ A +
Sbjct: 10 EKYRPRRLDEMVGQKDIVVRLQSYVKTGNL-PHLLFTGSAGIGKTTAAVALAREF----- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
F NF E++ ++++G+D VR +K + P A FK+ +
Sbjct: 64 --------------FGDSWQTNFREMNASDERGIDVVRNQIKEFARTSPLAGATFKILFL 109
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L + A + +E + FI + IQSRC Y F + ++
Sbjct: 110 DEADALTTDAQAALRRTMETYARTCRFILSCNYSSKIIDPIQSRCAIYRFRPLDREAVIE 169
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
R+I+A E L V ALD I A G +R A L ++L I + E+
Sbjct: 170 ETRRIAAAEGLTVTEGALDAIVYVASGDMRKAINALQGAAILRTDIDEETIFEITATARP 229
Query: 703 EKLLELLELAMSSDTAETVKRARELMD-SGVDPMVLMSQ 740
E++ ELL+L++ E + EL G+ P L++Q
Sbjct: 230 EEIDELLDLSIGGRFDEAEQALLELTHVRGIAPNELINQ 268
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 21/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V++ + RG P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLE-EVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + I + IQSR F+ + + A
Sbjct: 108 DEADNMTSDAQQALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFA 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR I+ E + + DAL+ I G +R A L + GK IT V + +G+VS
Sbjct: 168 RLRYIADNEGVKISDDALEAIYEFTQGDMRRAINALQIAATTGKEITEETVAKALGMVSP 227
Query: 703 EKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQL 741
L E L A + + + ++D G+ + ++ QL
Sbjct: 228 RLLRETLNDAFRGNFGKAATQIYGFVVDGGIGELEIVKQL 267
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 72/268 (26%), Positives = 128/268 (47%), Gaps = 23/268 (8%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P DE++ Q +V+ L + + P LF GP GTGKT+ AAL V
Sbjct: 8 AEKYRPKSLDEIVNQKEIVERLKKFVKEKNM-PHLLFAGPPGTGKTT------AALALV- 59
Query: 522 TDQTKPCGYCRECNDFISGKSRN-FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
D R F+E++ ++++G+D +R +K + + S + FKV
Sbjct: 60 -------------RDLYGNNYRQYFLELNASDERGIDVIRNKVKEFARTVASNNVPFKVI 106
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E + FI + + IQSR + F +K D+
Sbjct: 107 LLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDV 166
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
V RL +I+ E + +P ++ I G +R A ++ S GK IT V +++G+
Sbjct: 167 VNRLIQIAKNEKVEFDPKGIETIFDITQGDMRKAINVIQAASAYGK-ITVETVYKVLGLA 225
Query: 701 SEEKLLELLELAMSSDTAETVKRARELM 728
+++ E+L LA+S + + REL+
Sbjct: 226 QPKEIREMLHLALSGKFLQARDKLRELL 253
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 72/280 (25%), Positives = 129/280 (46%), Gaps = 22/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++G +V L + +SR ++ + LF GP GTGKT+ A + L
Sbjct: 18 EKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHM-LFSGPAGTGKTTCATAIAREL----- 71
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ +F+E++ ++++G+D VR +K+ A +++ +
Sbjct: 72 --------------YGDDWREHFLELNASDERGIDVVRDRIKNF-ARTSFGGVEYRIIFL 116
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ V FI + IQSRC + F+ + D +
Sbjct: 117 DEADALTSDAQSALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAE 176
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
+R I+AEE++ + D LD + ADG +R A L S+ G + S V +
Sbjct: 177 EIRTIAAEEDIELTEDGLDALVYAADGDMRKAINGLQAASVSGDTVDESAVYAITSTARP 236
Query: 703 EKLLELLELAMSSD-TAETVKRARELMDSGVDPMVLMSQL 741
E++ +++ A+ D TA R L + G+ ++ QL
Sbjct: 237 EEIRTMVQSALDGDFTASRATLDRLLTEEGIAGGDIIDQL 276
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 133/268 (49%), Gaps = 24/268 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE++G +++ L N + + + P LF G G GKT+ AAL C+A
Sbjct: 7 EKYRPENLDEVVGHQEIIKRLKNYVEKKSM-PHLLFSGSPGVGKTT------AAL-CLAK 58
Query: 523 DQTKPCGYCRECNDFISGKS--RNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
D + G + NF+E++ ++++G+D +R +K + P FKV
Sbjct: 59 D--------------LYGNTWKENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVI 104
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
+DE L S A + +E+ F+ + IQSRC + F+ +K D+
Sbjct: 105 FLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDL 164
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
V L++IS +E++NVE +D I ++G +R A +L + + K I +++ ++
Sbjct: 165 VKNLKEISEKESINVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKNINETVIYKVASKA 224
Query: 701 SEEKLLELLELAMSSDTAETVKRARELM 728
+++ ++ ELA++ E ++ +LM
Sbjct: 225 RPDEIKKMTELALNGKFVEAREQLYKLM 252
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 97.4 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 90/345 (26%), Positives = 157/345 (45%), Gaps = 42/345 (12%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P F+E++ V L + G + P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFEEVVDLEEVKARLREFVKAGNL-PHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G+ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGIGVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + + + I SRC + F+ + +
Sbjct: 108 DEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAE 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR+I+ E + ++ DA+DLI ++G +R A +L + + K + ++ V V
Sbjct: 168 RLREIARSEGVELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELMD----SGVDPM-VLMSQLASLIMDIIAGTYTIGG 757
+LEL LAM D A+ + RELM +GVD + V +L + +D
Sbjct: 228 SDVLELFNLAMGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRMQLD---------- 277
Query: 758 RSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802
+AE+ +LLSE + +L ++ L++LGS+
Sbjct: 278 -DDVKAEVA------ELLSEVDYRLTQGADEEIQLMYFLMKLGSI 315
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 70/268 (26%), Positives = 131/268 (48%), Gaps = 23/268 (8%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P D+++ Q +V+ L + + + P LF GP GTGKT+ AAL V
Sbjct: 10 AEKYRPRSLDDIVNQKDIVERLKRFV-KDKNMPHLLFSGPPGTGKTT------AALALV- 61
Query: 522 TDQTKPCGYCRECNDFISGKSRN-FMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
+D R F+E++ ++++G+D +R +K + + + FKV
Sbjct: 62 -------------HDLYGDNYRQYFLELNASDERGIDVIRNKVKEFARTVAGGNVPFKVV 108
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E + FI + + IQSR + F +K D+
Sbjct: 109 LLDEADNMTADAQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDV 168
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
VARL I+ E + + AL+ I G +R A +L S+ GK +T V +++G+
Sbjct: 169 VARLAYIAKNEKVEYDQKALETIYDITQGDMRKAINILQASSVYGK-VTVEAVYKVLGLA 227
Query: 701 SEEKLLELLELAMSSDTAETVKRARELM 728
+++ E++ LA+ + + ++ REL+
Sbjct: 228 QPKEIREMIMLALQGNFLKAREKLRELL 255
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 95.5 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 74/280 (26%), Positives = 126/280 (45%), Gaps = 21/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V L + G + P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLRQFVKAGNM-PHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + + + IQSR F+ + + A
Sbjct: 108 DEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFA 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RLR I+ E + V DAL+ I G +R A L + + K +T +V + +G+VS
Sbjct: 168 RLRYIAENEGVKVSDDALEAIYEFTQGDMRRAINALQIAATVSKAVTEEVVAKALGMVSP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQL 741
L E L A+ + + + D GV + ++ Q+
Sbjct: 228 RLLRETLYEAVKGSFGKAATQIYGFVADGGVGELEIIKQI 267
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 94.7 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 69/266 (25%), Positives = 124/266 (46%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P FDE++ V L + G + P LF GP GTGKT+ A + + L
Sbjct: 8 EKYRPRSFDEVVDLEEVKARLREFVKAGNM-PHLLFYGPPGTGKTTMALVLARELYG--- 63
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y RE N +E++ ++++G++ +R +K + P FK+ ++
Sbjct: 64 ------EYWRE----------NTLELNASDERGINVIRERVKEFARTAPVGKAPFKLVIL 107
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + S A + +E Q FI + + + I SRC + F+ + +
Sbjct: 108 DEADNMTSDAQQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAE 167
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RL+ I+ E + + DA+++I ++G +R A +L + K + ++ V V
Sbjct: 168 RLKFIAKNEGVELREDAINMIYELSEGDMRKAINLLQVAAATNKVVDANAVASAAIAVRP 227
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
++EL LA+S D + ++ RELM
Sbjct: 228 ADIIELFNLAISGDFVKAREKLRELM 253
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/295 (29%), Positives = 133/295 (45%), Gaps = 35/295 (11%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ V L T+ + P LF GP GTGKTST I +
Sbjct: 29 EKYRPKNLDEVTAQDHAVTVLKKTLKSANL-PHMLFYGPPGTGKTST--ILALTKELYGP 85
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKH---LSAGLPS------- 572
D K SR +E++ ++++G+ VR +K+ L+ PS
Sbjct: 86 DLMK---------------SR-ILELNASDERGISIVREKVKNFARLTVSKPSKHDLENY 129
Query: 573 ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLF 632
P +K+ ++DE + + A + +E F I + + + SRC K+ F
Sbjct: 130 PCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRF 189
Query: 633 NKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLS----LL--GK 686
+ + + RLR IS +EN+ + L+ I + G LR T+L S L GK
Sbjct: 190 KALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGK 249
Query: 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQL 741
ITS+ V EL GVV + L+E++E S D E K M SG +++QL
Sbjct: 250 NITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQL 304
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 94.0 bits (232), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P E++G + +++ L N + + + P LF G G GKT+ A + L
Sbjct: 7 EKYRPETLSEVVGHHEIIKRLTNYVEKKSM-PHLLFSGSPGVGKTTAALALAKDL----- 60
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ NF+E++ ++++G+D +R +K + P FKV +
Sbjct: 61 --------------YGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFL 106
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ FI + IQSRC + F+ +K D+V
Sbjct: 107 DESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVE 166
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
L+ IS +ENLN+E +D I ++G +R A +L + + IT +V ++
Sbjct: 167 NLKDISEKENLNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDEITEEIVYKVASKARP 226
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+++ ++ +LA++ E ++ LM
Sbjct: 227 DEIKKMTQLALNGKFVEAREQLYNLM 252
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 124/266 (46%), Gaps = 21/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++GQ ++ L + + P +F GP G GKT+ A +A
Sbjct: 10 EKYRPQKLDDIVGQEHIIPRLKRYVEEKSM-PNLMFTGPAGVGKTTAA---------LAL 59
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ Y R+ NF+E++ ++ +G+D VR +K+ P +P F++ +
Sbjct: 60 AREILGEYWRQ----------NFLELNASDARGIDTVRTSIKNFCRLKPVGAP-FRIIFL 108
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + A + +E + FI + IQSRC + F +K I+
Sbjct: 109 DEVDNMTKDAQHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIK 168
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RL I+ +ENL E AL+ I A+G LR A +L + LG++IT S + ++V
Sbjct: 169 RLEYIAEKENLEYEAHALETIVYFAEGDLRKAINLLQSAASLGEKITESSIYDVVSRARP 228
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+ + ++++ + E RE+M
Sbjct: 229 KDVRKMIKTILDGKFMEARDMLREIM 254
>sp|Q8SQM0|RFC4_ENCCU Replication factor C subunit 4 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RFC4 PE=1 SV=1
Length = 309
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 129/279 (46%), Gaps = 23/279 (8%)
Query: 461 LSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCV 520
L KY+P +++G N LV+ + R P LF GP GTGKT+ AKI + L
Sbjct: 4 LVNKYQPSEIQDIVG-NEATMELVSLMIESRDMPHLLFTGPPGTGKTTCAKILARRL--- 59
Query: 521 ATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVF 580
G +E++ ++++G+D VR +K A FK+
Sbjct: 60 ------------------LGNKEGLLELNASDERGIDTVRTTIKSF-AQRRVKDCEFKII 100
Query: 581 VIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDI 640
++DE + + A + +E FI I + IQSRC F++I+ I
Sbjct: 101 ILDEADSMTTTAQQAMRRVMEIHSSECRFILICNVFTKIFEPIQSRCAILRFDRIEQSVI 160
Query: 641 VARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVV 700
+ RL++IS E + + +ALDL+ +DG +R + +L + + +++G+
Sbjct: 161 LKRLKEISEGEGIRITAEALDLVVELSDGDMRQSLNILQACINSPGTVDQDYIIKIIGLP 220
Query: 701 SEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMS 739
S +++ ++L+ + + E ++ E+ + DP+ L++
Sbjct: 221 SPKRIEKVLQRLLKREVEEALEMFDEIWEEKFDPLDLIN 259
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 134/294 (45%), Gaps = 28/294 (9%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQEEVVAVLKKSL-EGADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK IT ++
Sbjct: 203 SDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVI 262
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
++ GV+ EK+ + S + ++L+D G L++QL ++++
Sbjct: 263 TDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE 316
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 125/266 (46%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P E++G + +++ L N + + + P LF G G GKT+ A + L
Sbjct: 7 EKYRPQTLSEVVGHHEIIKRLTNYVEKKSM-PHLLFSGSPGVGKTTAALALAKDL----- 60
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ NF+E++ ++++G+D +R +K + P FKV +
Sbjct: 61 --------------YGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFL 106
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ F+ + IQSRC + F+ +K D+V
Sbjct: 107 DESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVE 166
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
L++IS +ENL +E +D I ++G +R A +L + + +T +V ++
Sbjct: 167 NLKEISEKENLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARP 226
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+++ ++ +LA++ E+ ++ LM
Sbjct: 227 DEIKKMTQLALNGKFVESREQLYNLM 252
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 158/324 (48%), Gaps = 35/324 (10%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P D++IG++ + +L + + G + P +F GP GTGKTSTA + L
Sbjct: 6 TEKYRPKRLDDVIGEDENINTLKSFVKNGDL-PHLIFAGPAGTGKTSTAIALTIEL---- 60
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
F NF+E++ ++++G+D +R +K + PS FK+
Sbjct: 61 ---------------FGDDWKENFLELNASDERGIDIIRNNIKDFAKIRPSNKLGFKIIF 105
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE L ++ A + +E FIF + IQSRC F + +
Sbjct: 106 LDEADQLTNEAQAALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAME 165
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
+LR+I+ E +++ D+LD I +DG +R A ++ + G+ I S + E+ G ++
Sbjct: 166 RKLREIAKNEKFDIDDDSLDAIYEISDGDMRKAINVMQAIQSTGE-IKPSKIYEISGEIN 224
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLT 761
+ + L+ L+++ ++ A+ L+D M++ L+ + DII G ++ R+
Sbjct: 225 KNEYKNLISLSLNGAFSD----AKSLLDK----MLVDYGLSGI--DIIRGMHS-AIRNER 273
Query: 762 EAELERLKHALKLLSEAEKQLRLS 785
A ++L+ L++ AE + R+S
Sbjct: 274 IANRQKLEI---LIALAEFEFRIS 294
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 122/266 (45%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P E++G + +++ L N + + + P LF G G GKT+ A + L
Sbjct: 7 EKYRPETLPEVVGHHEIIKRLTNYVEKKSM-PHLLFSGSPGVGKTTAALALAKDL----- 60
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ NF+E++ ++++G+D +R +K + P FKV +
Sbjct: 61 --------------YGDTWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFL 106
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ FI + IQSRC + F+ +K D+V
Sbjct: 107 DESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVE 166
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
L+ IS +E L +E +D I ++G +R A +L + + +T +V ++
Sbjct: 167 NLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARP 226
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+++ ++ +LA++ E ++ LM
Sbjct: 227 DEIKKMTQLALNGKFVEAREQLYNLM 252
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 121/266 (45%), Gaps = 20/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P E++G + +++ L N + + + P LF G G GKT+ A + L
Sbjct: 7 EKYRPETLPEVVGHHEIIKRLTNYVEKKSM-PHLLFSGSPGVGKTTAALALAKDL----- 60
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ NF+E++ ++++G+D +R +K + P FKV +
Sbjct: 61 --------------YGETWRENFLELNSSDERGIDVIRTKVKDFARTKPIGDAPFKVIFL 106
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ FI + IQSRC + F+ +K D+V
Sbjct: 107 DESDALTSDAQNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVE 166
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
L+ IS +E L +E +D I ++G +R A +L + + +T +V ++
Sbjct: 167 NLKDISEKETLTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDTVTEEIVYKVASKARP 226
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+++ ++ LA++ E ++ LM
Sbjct: 227 DEIKKMTHLALNGKFVEAKEQLYNLM 252
>sp|A5UMF3|RFCS_METS3 Replication factor C small subunit OS=Methanobrevibacter smithii
(strain PS / ATCC 35061 / DSM 861) GN=rfcS PE=3 SV=1
Length = 315
Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 70/266 (26%), Positives = 116/266 (43%), Gaps = 21/266 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D++IGQ +V L + + P +F GP G GKT+TA +A
Sbjct: 7 EKYRPQNLDDIIGQKQIVNRLQKYVGEESM-PNLMFTGPAGVGKTTTA---------IAL 56
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
+ Y R+ NF+E++ ++ +G+D VR +K+ P +P F++ +
Sbjct: 57 VKAILGEYWRQ----------NFLELNASDARGIDTVRNDIKNFCRLKPVGAP-FRIIFL 105
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE + A + +E + FI + IQSRC + F IK +I
Sbjct: 106 DEVDNMTKDAQHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIAN 165
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
RL+ I E ++ I A+G +R A +L + GK++ V E+V
Sbjct: 166 RLKYICTSERFEYTDGGIEAIEYFAEGDMRKAVNVLQAAASEGKQVDEDAVYEVVSKAKP 225
Query: 703 EKLLELLELAMSSDTAETVKRARELM 728
+ + L+ A+S D RE M
Sbjct: 226 QDVHNLITKALSGDFMGARNLLRETM 251
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 85.1 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 72/294 (24%), Positives = 138/294 (46%), Gaps = 31/294 (10%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P E+ G++ +Q L + + + + P LF G GTGKTSTA + L
Sbjct: 6 TEKYRPKSLSEIYGEDENIQKLKSFVEKKEL-PHLLFAGSVGTGKTSTAIALAIEL---- 60
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
F NF+E++ +N+ G+D +R +K ++ PS FK+
Sbjct: 61 ---------------FGESWKENFIEMNASNENGIDVIRNKIKDIARIRPSNPLGFKILF 105
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE L ++ A + +E + F+F + IQSR F ++D I
Sbjct: 106 LDEADQLTAEAQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIK 165
Query: 642 ARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVS 701
+L +I+ E ++ ++++ + + G +R A +L + G+ I+ + E++G S
Sbjct: 166 KKLNEIAKNEGFTIDDESMEAMVEVSGGDMRKAINVLQAVYTSGE-ISPKKIYEIIGYAS 224
Query: 702 EEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTI 755
E + +L+ A++ E AR++ VD M++ L+ + DI+ ++I
Sbjct: 225 PESVNKLISRAINGLFDE----ARQI----VDKMMIEDGLSGI--DIVKSVHSI 268
>sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Methanocorpusculum labreanum
(strain ATCC 43576 / DSM 4855 / Z) GN=rfcS PE=3 SV=1
Length = 321
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/281 (24%), Positives = 123/281 (43%), Gaps = 23/281 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P E++GQ VV+ L + ++ + P LF G G GKT+ A
Sbjct: 10 EKYRPKNLAEVVGQQDVVERLRSYVA-TKALPHLLFTGSAGVGKTTCA------------ 56
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
RE F + NF E++ ++++G+D VR +K + P FK+ +
Sbjct: 57 -----VALAREM--FGDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLGDATFKILFL 109
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L A + +E + FI + IQSRC Y F + D I
Sbjct: 110 DEADALTQDAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISE 169
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
+ +I+ +E + ++ A I + G +R A L +++ +T+ + +
Sbjct: 170 EIARIAKKEGITIDEGAYVAITYVSLGDMRKAINALQGAAIVSDHVTAENIYAITSNAKP 229
Query: 703 EKLLELLELAMSSD--TAETVKRARELMDSGVDPMVLMSQL 741
+++ +LL + D TAE + A + D G+ P L++QL
Sbjct: 230 QEITDLLARCLEGDFETAERMLHAL-MYDKGIAPNELLNQL 269
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 84.7 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 22/269 (8%)
Query: 462 SQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVA 521
++KY+P D++I Q + ++L + + + + P LF GP GTGKT+ A + L
Sbjct: 5 TEKYRPKRIDDIINQEEIKKALKSFVEKKNM-PHLLFAGPPGTGKTTAALALAHEL---- 59
Query: 522 TDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFV 581
+ NF+E++ ++++G+D +R+ +K + P FK+
Sbjct: 60 ---------------YGDAWRENFLELNASDERGIDVIRHKVKEFARAKPIGDVPFKIVF 104
Query: 582 IDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIV 641
+DE L A + +E+ Q FI + IQSR + F ++
Sbjct: 105 LDEADALTRDAQQALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFR 164
Query: 642 ARLRKISAEENLNVEPDALDLIALN--ADGSLRDAETMLDQLSLLGKRITSSLVNELVGV 699
+ +I E L +E + + AL A+G LR A +L +++ K IT + E+ +
Sbjct: 165 ELINRIVKGEGLILENEDEIINALYDIAEGDLRKAINILQAAAMMSKTITVDRLYEIASI 224
Query: 700 VSEEKLLELLELAMSSDTAETVKRARELM 728
+++ E+L AM + E +LM
Sbjct: 225 AKPKEIDEVLNKAMQGNFLEARSMLIDLM 253
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 84.0 bits (206), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 76/292 (26%), Positives = 132/292 (45%), Gaps = 31/292 (10%)
Query: 465 YKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ 524
Y+P D++ Q VQ L T+ + P LF G GTGKTST S
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNL-PHMLFYGSPGTGKTSTILALS---------- 73
Query: 525 TKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSA--------GLPSASPR 576
RE KSR +E++ ++++G+ +R +K + G P P
Sbjct: 74 -------RELFGPQLMKSR-VLELNASDERGISIIREKVKSFAKTTVTNKVDGYPC--PP 123
Query: 577 FKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIK 636
FK+ ++DE + A + +E + F I + + + SRC KY F +
Sbjct: 124 FKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLD 183
Query: 637 DGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVN 694
+ ++V RL I+A++ +++EP ++ + + G +R A T L + L G IT S V
Sbjct: 184 NENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVE 243
Query: 695 ELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIM 746
EL G V + LL+ A + + + +R++ G +++SQL +++
Sbjct: 244 ELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLL 295
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 38/301 (12%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D +I ++ SL I R P LF GP G+GKTST K C A
Sbjct: 21 EKYRPQEIDHIISNRDIILSLKKFI-ESRTLPHLLFFGPSGSGKTSTIK-------CCAR 72
Query: 523 DQTKPCGYCRECNDFISGKSRNFM--EVDGTNKKGLDRVRYILKHL-----SAGLP-SAS 574
+ I GK N+M E++ +N++G++ VR +K+ S LP
Sbjct: 73 E--------------IYGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR 118
Query: 575 PRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNK 634
FK+ ++DE + + + +E+ F I DID + ++QSRC + F+
Sbjct: 119 DIFKLVILDEIDSMTVEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSP 178
Query: 635 IKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSL-LGKRITSSLV 693
+ + D+ RL I E + E +A++ I + G +R A L ++L +G I + V
Sbjct: 179 LNELDMHGRLSDICRLEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGGSINTEDV 238
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMD-------SGVDPMVLMSQLASLIM 746
++ G E + ++ ++ S + +T + + D + + L+ +L +++M
Sbjct: 239 YKISGHCMPEIVTDVFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVM 298
Query: 747 D 747
+
Sbjct: 299 E 299
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 114/253 (45%), Gaps = 21/253 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P+ +++ GQ ++ L++ ++ + P LF GP G GKT++A S A
Sbjct: 17 EKYRPVRLNQVAGQEETIERLMSYVATKNL-PHLLFSGPPGVGKTASA--VSIAREIFGE 73
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
D + NF E++ ++++G+D VR +K+ + P FK+ +
Sbjct: 74 DLWR----------------ENFTELNASDERGIDIVRNKIKNFAKTAPMGGAPFKIIFL 117
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ FI + IQSRC Y F ++ D I
Sbjct: 118 DEADALTSDAQSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRE 177
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG--KRITSSLVNELVGVV 700
RL I+ E++L++ + + A G +R A L + + K I+ +
Sbjct: 178 RLEYIAKEQDLSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATA 237
Query: 701 SEEKLLELLELAM 713
+ E++ L+E A+
Sbjct: 238 NPEEIKNLIETAL 250
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 83.6 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 69/280 (24%), Positives = 123/280 (43%), Gaps = 22/280 (7%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P D+++G + + L I++ + P LF GP G GKT+ A +A V
Sbjct: 16 EKYRPQTLDDIVGHESITERLKQYIAQNDL-PHLLFAGPAGVGKTTAA---TAIAKEVYG 71
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
D + NF+E++ ++++G+D VR +K A ++ +
Sbjct: 72 DDWR----------------ENFLELNASDQRGIDVVRDRIKSF-ARASFGGYDHRIIFL 114
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E+ FI + IQSRC + F+ + D +
Sbjct: 115 DEADALTSDAQSALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDE 174
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
++R I+ E + + D +D + ADG +R A L +++G + V +
Sbjct: 175 QIRIIADTEGIELTDDGVDALVYAADGDMRKAINGLQAAAVMGGTVDEEAVYTITSTARP 234
Query: 703 EKLLELLELAMSSD-TAETVKRARELMDSGVDPMVLMSQL 741
E++ E++ AM D TA + L D G+ ++ QL
Sbjct: 235 EEIREMVTEAMDGDFTAARSQLETLLTDVGIAGGDIIDQL 274
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/294 (24%), Positives = 131/294 (44%), Gaps = 28/294 (9%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P DE+ Q+ VV L ++ G P LF GP GTGKTST I +AA
Sbjct: 42 EKYRPKCVDEVAFQDEVVAVLRKSL-EGADLPNLLFYGPPGTGKTST--ILAAARELFGP 98
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSAS-------P 575
+ + +E++ ++++G+ VR +K+ + S S P
Sbjct: 99 ELFR----------------LRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCP 142
Query: 576 RFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKI 635
FK+ ++DE + S A + +E+ + F I + + + SRC K+ F +
Sbjct: 143 PFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPL 202
Query: 636 KDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLV 693
D RL I+ +EN+ + + + + ++G LR A T L + L GK ++ ++
Sbjct: 203 SDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVI 262
Query: 694 NELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMD 747
++ GV+ + + S + + L+D G L++QL I++
Sbjct: 263 TDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHDAIIE 316
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/253 (25%), Positives = 112/253 (44%), Gaps = 21/253 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P+ D++ GQ ++ L + ++ + P LF GP G GKT++A S A
Sbjct: 13 EKYRPVRLDQVAGQEETIERLKSYVATKNL-PHLLFSGPPGVGKTASA--VSIAREIFGE 69
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
D RE NF E++ ++++G+D VR +K+ + P FK+ +
Sbjct: 70 D------LWRE----------NFTELNASDERGIDVVRTKIKNFAKTAPMGGAEFKIIFL 113
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L S A + +E FI + IQSRC + F ++ D I
Sbjct: 114 DEADALTSDAQSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRK 173
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVGVV 700
RL I+ ++ L++ D + + + G +R A L + + K I+ +
Sbjct: 174 RLEYIAKDQVLSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTATA 233
Query: 701 SEEKLLELLELAM 713
+ E + L+E A+
Sbjct: 234 NPEDIRNLIETAL 246
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 82.4 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/256 (24%), Positives = 112/256 (43%), Gaps = 21/256 (8%)
Query: 463 QKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVAT 522
+KY+P ++++G + + L + + R + P LF GP GTGKT+++ + L
Sbjct: 14 EKYRPERLEDVVGHPDITERLQSYVDRDDL-PHLLFAGPAGTGKTASSVSIAKEL----- 67
Query: 523 DQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVI 582
Y + D NF+E++ ++++G+D VR +K + ++V +
Sbjct: 68 -------YGDDWQD-------NFLELNASDERGIDVVRDRIKDFARS-SFGGHNYRVIFL 112
Query: 583 DECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVA 642
DE L A + +E+ FI + IQSRC + F ++ D + A
Sbjct: 113 DEADALTDDAQSALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAA 172
Query: 643 RLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSE 702
LR+I+ E L D +D + ADG +R A L S G + V +
Sbjct: 173 HLREIAETEGLEHTDDGIDALVYAADGDMRRAINALQAASATGDSVNEETVYAITATARP 232
Query: 703 EKLLELLELAMSSDTA 718
E++ ++ A+ D A
Sbjct: 233 EEIETMVTEALGGDFA 248
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,101,553
Number of Sequences: 539616
Number of extensions: 20216532
Number of successful extensions: 91242
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 77268
Number of HSP's gapped (non-prelim): 10410
length of query: 1268
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1139
effective length of database: 121,958,995
effective search space: 138911295305
effective search space used: 138911295305
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)