Query 000818
Match_columns 1268
No_of_seqs 428 out of 3155
Neff 4.8
Searched_HMMs 29240
Date Tue Mar 26 18:06:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000818.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_586-590//hhsearch_pdb/000818hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jr3_A DNA polymerase III subu 1.0 1 1 367.9 36.7 344 457-802 2-359 (373)
2 1sxj_C Activator 1 40 kDa subu 1.0 1 1 335.0 33.2 313 457-802 11-330 (340)
3 2chq_A Replication factor C sm 1.0 1 1 325.1 29.8 314 456-802 2-316 (319)
4 1iqp_A RFCS; clamp loader, ext 1.0 1 1 318.1 31.7 312 457-801 11-323 (327)
5 1a5t_A Delta prime, HOLB; zinc 1.0 1 1 317.2 21.5 300 475-801 6-321 (334)
6 1sxj_E Activator 1 40 kDa subu 1.0 1 1 315.3 27.3 325 459-801 2-351 (354)
7 3u61_B DNA polymerase accessor 1.0 1 1 308.8 28.5 300 456-801 11-319 (324)
8 1sxj_D Activator 1 41 kDa subu 1.0 1 1 308.2 30.8 315 456-801 22-352 (353)
9 1jr3_D DNA polymerase III, del 1.0 1 1 305.6 22.5 296 481-802 7-334 (343)
10 1sxj_B Activator 1 37 kDa subu 1.0 1 1 304.3 32.1 310 458-802 8-319 (323)
No 1
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=1.00 E-value=1 Score=367.94 Aligned_cols=344 Identities=30% Similarity=0.515 Sum_probs=317.4
Q ss_pred HCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 10124642089987634684999999999998199997299995798419999999999960226889998887655432
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~ 536 (1268)
.+.+|++||||.+|++++||+.+++.|.+++..++.++.|||+||+|+|||++++.+++.++|.......||+.|..|..
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CCHHHHHHHCCCCHHHCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
T ss_conf 73777886388854540580999999999998299982799889999779999999999967878888887756377999
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 23599852799908887486899999999980899999984799995899989798999999870799958999971899
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ 616 (1268)
+..+...+++++++....+++.++.+++.+...+ ..++++||||||+|.++...+++|++++++++.+++||++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 159 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP--ARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP 159 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCC--SSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCG
T ss_pred HHCCCCCCEEEECCCCCCCHHHHHHHHHHHHHCC--CCCCEEEEEEECCCHHCHHHHHHHHHHHHCCCCCEEEEEEECCH
T ss_conf 8625888568725544577889999999985252--24883799997821216999999999986089856999986995
Q ss_pred CCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH-CCCCCHHHHHH
Q ss_conf 99656654152399960799789999999999853999999999999997399999999999999971-78669999999
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL-GKRITSSLVNE 695 (1268)
Q Consensus 617 ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsll-gk~IT~edV~e 695 (1268)
.++++++.+||+.+.|.+++.+++..+|..++.++++.++++++..|+..++|++|.+.++++++..+ ++.||.++|.+
T Consensus 160 ~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~ 239 (373)
T 1jr3_A 160 QKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239 (373)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHH
T ss_pred HHCCHHHHHHEEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 76767887330476588979999999999999875999789999999997799999999999999974478654999999
Q ss_pred HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------------HCCCCCCH
Q ss_conf 85135368999999999829999999999999984999599999999999999999620-------------00357897
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-------------IGGRSLTE 762 (1268)
Q Consensus 696 LVG~VseddIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~-------------~~~r~ls~ 762 (1268)
+++....+.++++++++..++...++..+..+...|++|..++..|.++|++++..+.. ...+.+..
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 319 (373)
T 1jr3_A 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELART 319 (373)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 86788899999999999768999999999999870868999999999999999997614741112466589999999985
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 7499999999999999999430599309999999981699
Q 000818 763 AELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 763 ~slekL~rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~~ 802 (1268)
++.+.|.+++..+.+++.++|.+.++++.||.++++++..
T Consensus 320 ~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 320 IPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 8999999999999999999871899339999999999845
No 2
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=334.99 Aligned_cols=313 Identities=20% Similarity=0.334 Sum_probs=283.6
Q ss_pred HCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 10124642089987634684999999999998199997299995798419999999999960226889998887655432
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~ 536 (1268)
+..+|++||||.+|++++||+.+++.|..++..+++++ |||+||+|+|||++++++|+.+.|...
T Consensus 11 ~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~-------------- 75 (340)
T 1sxj_C 11 ENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNY-------------- 75 (340)
T ss_dssp -CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH--------------
T ss_pred CCCCHHHHHCCCCHHHHCCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 67743887299859884095999999999996699866-999899998899999999998738776--------------
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 23599852799908887486899999999980899999984799995899989798999999870799958999971899
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ 616 (1268)
...+.++++++..+++.+++++..+.....++.++++|+||||+|.|+..++++|++++|+++.+++||++++..
T Consensus 76 -----~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 76 -----SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp -----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----CCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf -----660799737565558999999999986145678885399995788778999999999874679982799982571
Q ss_pred CCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-----CCCHH
Q ss_conf 9965665415239996079978999999999985399999999999999739999999999999997178-----66999
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGK-----RITSS 691 (1268)
Q Consensus 617 ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk-----~IT~e 691 (1268)
.+++++|++||+.+.|.+++.+++..+|..++.++++.++++++.+++..++|++|.++++|+++..+.. .||.+
T Consensus 151 ~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~ 230 (340)
T 1sxj_C 151 HKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDD 230 (340)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHH
T ss_pred CCCCHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHH
T ss_conf 22444677434057615989999999999999984999899999999998699899999999999984687666644699
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH-HHHHH
Q ss_conf 99998513536899999999982999999999999998-49995999999999999999996200035789774-99999
Q 000818 692 LVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMD-SGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAE-LERLK 769 (1268)
Q Consensus 692 dV~eLVG~VseddIfeLLdAIlskD~~~ALk~LreLl~-~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~s-lekL~ 769 (1268)
+|.++++....+.++++++++..+|...++.++.+++. .|++|..|+..|..+++.+ .++ ...+.
T Consensus 231 ~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~-------------~~~~~~~~~ 297 (340)
T 1sxj_C 231 VIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-------------ELQNEETRV 297 (340)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-------------CCSSHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------------CCCCHHHHH
T ss_conf 9999968999999999999998589999999999999976999999999999999864-------------699389999
Q ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 999999999999430599309999999981699
Q 000818 770 HALKLLSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 770 rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~~ 802 (1268)
+++..+.+++++|+.+.++.+.||.++++++..
T Consensus 298 ~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~ 330 (340)
T 1sxj_C 298 HLLTKLADIEYSISKGGNDQIQGSAVIGAIKAS 330 (340)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999999999884798699999999999998
No 3
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=1.00 E-value=1 Score=325.13 Aligned_cols=314 Identities=25% Similarity=0.397 Sum_probs=282.0
Q ss_pred HHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 11012464208998763468499999999999819999729999579841999999999996022688999888765543
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
+++.+|++||||.+|++++||+.+++.|.+++..++.++ |||+||+|+|||++|+.+++.+.|...
T Consensus 2 ~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~------------- 67 (319)
T 2chq_A 2 ENFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW------------- 67 (319)
T ss_dssp ----CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCH-------------
T ss_pred CCCCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC-------------
T ss_conf 764418771099989997687999999999996799976-998891996799999999998549755-------------
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 22359985279990888748689999999998089999998479999589998979899999987079995899997189
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTD 615 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte 615 (1268)
...++++++++..+++.++.++..+....+...+.++||||||+|.++...+++|++++++++.+++||++++.
T Consensus 68 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~ 141 (319)
T 2chq_A 68 ------RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNY 141 (319)
T ss_dssp ------HHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESC
T ss_pred ------CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf ------68769985755567279999999998537888888638998688867999999999999826878728998587
Q ss_pred CCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 99965665415239996079978999999999985399999999999999739999999999999997178669999999
Q 000818 616 IDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNE 695 (1268)
Q Consensus 616 ~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~e 695 (1268)
..++++++.+||+.+.|.+++.+++..+|..++.++++.+++++++.|+..++||+|.++++|++++..++.||.++|.+
T Consensus 142 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~ 221 (319)
T 2chq_A 142 VSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQ 221 (319)
T ss_dssp GGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHH
T ss_pred HHHCCHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 32344678831747782598999999999999997599989999999999869988999999999997589878999999
Q ss_pred HHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 8513536899999999982999999999999998-499959999999999999999962000357897749999999999
Q 000818 696 LVGVVSEEKLLELLELAMSSDTAETVKRARELMD-SGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKL 774 (1268)
Q Consensus 696 LVG~VseddIfeLLdAIlskD~~~ALk~LreLl~-~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALki 774 (1268)
+++......++++++++..++...++..+.+++. .|++|..++..+.++++.+ .++...+.+++..
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-------------~~~~~~l~~~~~~ 288 (319)
T 2chq_A 222 ITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-------------PIKDSLKVQLIDK 288 (319)
T ss_dssp HTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-------------CSCTTHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHH
T ss_conf 978999899999999998089999999999999974999999999999999864-------------6998999999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 9999999430599309999999981699
Q 000818 775 LSEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 775 LsEaDkqLKsS~d~rl~LE~aLLkL~~~ 802 (1268)
+.+++.++|.+.++.+.||.++++++..
T Consensus 289 l~~~~~~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 289 LGEVDFRLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 9999999985698799999999999975
No 4
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=318.05 Aligned_cols=312 Identities=25% Similarity=0.392 Sum_probs=279.5
Q ss_pred HCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 10124642089987634684999999999998199997299995798419999999999960226889998887655432
Q 000818 457 NIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECND 536 (1268)
Q Consensus 457 ~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~ 536 (1268)
...+|++||||.+|++++||+.+++.|.+++..++.++ |||+||+|+|||++|+.+++.++|...
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~-------------- 75 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENW-------------- 75 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred CCCCHHHCCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC--------------
T ss_conf 67734351588989996387999999999997499973-998896999899999999998468755--------------
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 23599852799908887486899999999980899999984799995899989798999999870799958999971899
Q 000818 537 FISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 537 i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ 616 (1268)
...++++++++..+++.++..+..+....+...+.++||||||+|.++...+++|++++++++.+++||++++.+
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 76 -----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----CCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf -----686699616344766899999999986077678997399996887679999999999987068787499996770
Q ss_pred CCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99656654152399960799789999999999853999999999999997399999999999999971786699999998
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696 (1268)
Q Consensus 617 ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~eL 696 (1268)
.++++++.+||..+.|.+++.+++..+|..++.++++.++++++++|+..++||+|.++++++++......||.++|.++
T Consensus 151 ~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~ 230 (327)
T 1iqp_A 151 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 230 (327)
T ss_dssp GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 00677789647078826999999999999999966999998999999997799889999999999864898789999999
Q ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 51353689999999998299999999999999-84999599999999999999999620003578977499999999999
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARELM-DSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLL 775 (1268)
Q Consensus 697 VG~VseddIfeLLdAIlskD~~~ALk~LreLl-~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiL 775 (1268)
++.+..++++++++++..++...++..+++++ ..|++|..++..|..+++. ..++...+.+++..+
T Consensus 231 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~-------------~~~~~~~l~~~~~~l 297 (327)
T 1iqp_A 231 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN-------------LPIEEPKKVLLADKI 297 (327)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG-------------SSSCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHH
T ss_conf 7899989999999999818999999999999997699999999999999986-------------369989999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99999943059930999999998169
Q 000818 776 SEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 776 sEaDkqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
.++|.++|.+.++.+.||.++++++.
T Consensus 298 ~~~~~~lk~~~~~~~~le~l~~~l~~ 323 (327)
T 1iqp_A 298 GEYNFRLVEGANEIIQLEALLAQFTL 323 (327)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999998659879999999999997
No 5
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=1.00 E-value=1 Score=317.21 Aligned_cols=300 Identities=22% Similarity=0.256 Sum_probs=250.2
Q ss_pred CCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC---
Q ss_conf 84999999999998199997299995798419999999999960226889998887655432235998527999088---
Q 000818 475 GQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGT--- 551 (1268)
Q Consensus 475 GQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaS--- 551 (1268)
-|+.+++.|.+++..++++|+|||+||+|+|||++|+.||+.++|.......||+.|..|+.+..+.+++++++++.
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCCCEEEEECCCCC
T ss_conf 42999999999997599661587778998239999999999980889889999989988999865999987997356567
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCHHHHCCEEEEE
Q ss_conf 87486899999999980899999984799995899989798999999870799958999971899996566541523999
Q 000818 552 NKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDIDNVPRSIQSRCQKYL 631 (1268)
Q Consensus 552 s~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ekL~paL~SRcqvI~ 631 (1268)
...+++.++++++.+...| +.++++||||||+|.|+..++|+|+++||+|+.+++||++|+++++++++|+|||+.+.
T Consensus 86 ~~~~i~~ir~l~~~~~~~~--~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~ 163 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHA--RLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHY 163 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCC--TTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHHHHHHCC--CCCCCEEEEECCHHHCCHHHHHHHHHHHCCCCCCEEEEEEECCHHHCCHHHHHCCEEEE
T ss_conf 8889999999999985264--36895799977634449999999998723798882899985994758378762226665
Q ss_pred ECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 60799789999999999853999999999999997399999999999999971786699999998513536899999999
Q 000818 632 FNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNELVGVVSEEKLLELLEL 711 (1268)
Q Consensus 632 F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~eLVG~VseddIfeLLdA 711 (1268)
|.+++.+++..||..++ .++++++..++..++|++|.|++++++.......++.+.+..++.
T Consensus 164 ~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~------------- 225 (334)
T 1a5t_A 164 LAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVP------------- 225 (334)
T ss_dssp CCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHH-------------
T ss_pred CCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------------
T ss_conf 89989999999999853-----899999999999809999999998652359999999999999983-------------
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----------HCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 9829999999999999984999599999999999999999620-----------00357897749999999999999999
Q 000818 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT-----------IGGRSLTEAELERLKHALKLLSEAEK 780 (1268)
Q Consensus 712 IlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~-----------~~~r~ls~~slekL~rALkiLsEaDk 780 (1268)
..+.. ..+..+ .+.++..++..|..+|+|++..+.. ...+.+..++.+.|.++++.+.+++.
T Consensus 226 --~~~~~---~~~~~l--~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T 1a5t_A 226 --SGDWY---SLLAAL--NHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHLSPSRLQAILGDVCHIRE 298 (334)
T ss_dssp --HCCCG---GGHHHH--CSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred --CHHHH---HHHHHH--HCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf --74799---999998--32569999999999999999963387422597799999999974899999999999999999
Q ss_pred HHH--CCCCCHHHHHHHHHHCCC
Q ss_conf 943--059930999999998169
Q 000818 781 QLR--LSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 781 qLK--sS~d~rl~LE~aLLkL~~ 801 (1268)
+++ .+.++++.+|.++++++.
T Consensus 299 ~l~~~~~~n~~l~le~ll~~l~~ 321 (334)
T 1a5t_A 299 QLMSVTGINRELLITDLLLRIEH 321 (334)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 98735899999999999999998
No 6
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=315.35 Aligned_cols=325 Identities=16% Similarity=0.229 Sum_probs=267.2
Q ss_pred HHHHHHCCCCCCCCCCCCHHHHHHHHHHH-HCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCC--------CCCCC
Q ss_conf 12464208998763468499999999999-8199997299995798419999999999960226889--------99888
Q 000818 459 RSLSQKYKPIFFDELIGQNIVVQSLVNTI-SRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQ--------TKPCG 529 (1268)
Q Consensus 459 ~~L~eKyRP~tFdDLVGQe~vvqtL~naI-k~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~--------~~PCg 529 (1268)
.+|++||||.+|++++||+.+++.|.+++ ..++.++ |+|+||+|+|||++++++++++.+..... ..||+
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CCCHHCCCCCCHHHHCCCHHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCCCEEEECCEEECCCCC
T ss_conf 7411222889788722779999999999851799885-998897999999999999999739987827762511004665
Q ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCHH--HHHHHHHHHHCCCCC--------CCCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 7655432235998527999088874868--999999999808999--------999847999958999897989999998
Q 000818 530 YCRECNDFISGKSRNFMEVDGTNKKGLD--RVRYILKHLSAGLPS--------ASPRFKVFVIDECHLLPSKTWLAFLKF 599 (1268)
Q Consensus 530 ~C~sC~~i~~G~s~dvIEIDaSs~~GID--~IreLIEev~~~p~~--------~~s~~KVIIIDEid~LS~~a~naLLK~ 599 (1268)
.|..|..+. ...++++++......+ .++++++.+....+. ..++++|+||||++.|...++++|+++
T Consensus 81 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 81 RKLELNVVS---SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -----CCEE---CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred CCCEEEEEC---CCCEEEECHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 430235642---56469843765387535899999999997445664223456678972899968441699999999999
Q ss_pred HCCCCCCEEEEEEECCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 707999589999718999965665415239996079978999999999985399999-9999999997399999999999
Q 000818 600 LEEPPQRVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVE-PDALDLIALNADGSLRDAETML 678 (1268)
Q Consensus 600 LEepp~~VVLILaTte~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~Id-eeALelLA~~S~GdLRdAlnlL 678 (1268)
|++++.+++||++|++++++++++++||+.+.|.+++.+++..+|..++.++++.++ ++++..|+..++||+|.++++|
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHCCCCEEEEEECCHHHHHHHHHHHCEEEECCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99616897799984877887899984401776689699999999999999809998929999999997699899999999
Q ss_pred HHHHHHCC-CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH----HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99997178-669999999851353689999999998299999999----9999998499959999999999999999962
Q 000818 679 DQLSLLGK-RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVK----RARELMDSGVDPMVLMSQLASLIMDIIAGTY 753 (1268)
Q Consensus 679 EkLsllgk-~IT~edV~eLVG~VseddIfeLLdAIlskD~~~ALk----~LreLl~~GvdPl~ILs~La~~irDLLa~k~ 753 (1268)
+++..+.. .||.+.+ +.....++.+++++++++.++...++. .+.+++..|.++..|+.+|..++.
T Consensus 238 ~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~------- 308 (354)
T 1sxj_E 238 ESMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL------- 308 (354)
T ss_dssp THHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-------
T ss_pred HHHHHHCCCCCCCCCC--CCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------
T ss_conf 9999857898586768--7896699999999999997306567999999999999909899999999999997-------
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 000357897749999999999999999943059930999999998169
Q 000818 754 TIGGRSLTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 754 ~~~~r~ls~~slekL~rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
.+..++...+.++++.+.++|+++|.|.++++.||.++++++.
T Consensus 309 -----~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 351 (354)
T 1sxj_E 309 -----DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMC 351 (354)
T ss_dssp -----TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred -----HCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf -----3158999999999999999988875699879999999999999
No 7
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=1.00 E-value=1 Score=308.82 Aligned_cols=300 Identities=22% Similarity=0.305 Sum_probs=267.5
Q ss_pred HHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 11012464208998763468499999999999819999729999579841999999999996022688999888765543
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
.+..+|++||||.+|++++||+.+++.|.+++..++.++.|||+||+|||||++|+++++.+
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l------------------ 72 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV------------------ 72 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT------------------
T ss_pred CCCCHHHHHHCCCCHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH------------------
T ss_conf 66142888668998999708699999999999769988079840969998999999999984------------------
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC-HHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 223599852799908887486899999999980899999984799995899989-7989999998707999589999718
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSASPRFKVFVIDECHLLP-SKTWLAFLKFLEEPPQRVVFIFITT 614 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~~s~~KVIIIDEid~LS-~~a~naLLK~LEepp~~VVLILaTt 614 (1268)
..++++++++. .+++.++..+..+....+ +.+.++|+||||+|.++ ...+++|++++++++.+++||+++|
T Consensus 73 ------~~~~~~i~~~~-~~~~~i~~~~~~~~~~~~-~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n 144 (324)
T 3u61_B 73 ------NADMMFVNGSD-CKIDFVRGPLTNFASAAS-FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITAN 144 (324)
T ss_dssp ------TEEEEEEETTT-CCHHHHHTHHHHHHHBCC-CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEES
T ss_pred ------CCCEEEECCCC-CCHHHHHHHHHHHHHHCC-CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf ------99879971644-678999999999985046-4789828999897655868899999999983799857999868
Q ss_pred CCCCCCHHHHCCEEEEEECCCCHHH-------HHHHHHHHHHHCCCCCCH-HHHHHHHHHCCCCHHHHHHHHHHHHHHCC
Q ss_conf 9999656654152399960799789-------999999999853999999-99999999739999999999999997178
Q 000818 615 DIDNVPRSIQSRCQKYLFNKIKDGD-------IVARLRKISAEENLNVEP-DALDLIALNADGSLRDAETMLDQLSLLGK 686 (1268)
Q Consensus 615 e~ekL~paL~SRcqvI~F~pls~eE-------Lv~iL~kiakkEGi~Ide-eALelLA~~S~GdLRdAlnlLEkLsllgk 686 (1268)
.+.++++++++||.++.|.+|+.++ +..++..++.++++.+++ +++++|+..++||+|.+++.|++++ .++
T Consensus 145 ~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~ 223 (324)
T 3u61_B 145 NIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKG 223 (324)
T ss_dssp SGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGT
T ss_pred CCCCCCHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH-CCC
T ss_conf 8110688899608088848989789988899999999999997699789599999999867997999999999986-369
Q ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 66999999985135368999999999829999999999999984999599999999999999999620003578977499
Q 000818 687 RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELE 766 (1268)
Q Consensus 687 ~IT~edV~eLVG~VseddIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~sle 766 (1268)
.||.++|.+++.. .+.++++++++..++..+++.++.+++. +|..|+.+|+.++.. .++.+
T Consensus 224 ~i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~--------------~~~~~ 284 (324)
T 3u61_B 224 VLDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS--------------RVTPQ 284 (324)
T ss_dssp CBCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--------------HSCHH
T ss_pred CCCHHHHHHHHCC--HHHHHHHHHHHHCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHHH--------------HCCHH
T ss_conf 9899999998578--8999999999973999999999998615---999999999999987--------------59999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 99999999999999943059930999999998169
Q 000818 767 RLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 767 kL~rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
.+.+++..|.++|++|+.+.++.+.||.++++++.
T Consensus 285 ~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 285 SIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp HHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99999999999999998589999999999999987
No 8
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=308.15 Aligned_cols=315 Identities=25% Similarity=0.366 Sum_probs=278.2
Q ss_pred HHCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 11012464208998763468499999999999819999729999579841999999999996022688999888765543
Q 000818 456 ENIRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECN 535 (1268)
Q Consensus 456 ~~~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~ 535 (1268)
....+|++||||.+|++++|++.+++.|..++..+++++ +||+||+|+|||++++++++.+.+...
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~------------- 87 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDL------------- 87 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHH-------------
T ss_pred CCCCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC-------------
T ss_conf 367537774299989984488999999999996399987-999899998899999999998379855-------------
Q ss_pred CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCC----------CCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 2235998527999088874868999999999808999----------999847999958999897989999998707999
Q 000818 536 DFISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPS----------ASPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQ 605 (1268)
Q Consensus 536 ~i~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~----------~~s~~KVIIIDEid~LS~~a~naLLK~LEepp~ 605 (1268)
....++++++++..+++.+++.+..+...... ..+.++||||||++.+....+++|++++++++.
T Consensus 88 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 88 -----MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSG 162 (353)
T ss_dssp -----HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTT
T ss_pred -----CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCC
T ss_conf -----566558876423454589999999986412222100000247788825999979875699999999999973689
Q ss_pred CEEEEEEECCCCCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
Q ss_conf 58999971899996566541523999607997899999999998539999999999999973999999999999999717
Q 000818 606 RVVFIFITTDIDNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLG 685 (1268)
Q Consensus 606 ~VVLILaTte~ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllg 685 (1268)
.++||++++.+.++++++.+||..+.|.+++.+++..+|..++.++++.++++++.+|+..++|++|.++++|+++..+.
T Consensus 163 ~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 163 VTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGA 242 (353)
T ss_dssp TEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHH
T ss_pred CCEEEEEECCHHHCCCHHHCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHC
T ss_conf 85699986852317620330473488479999999999999999808899999999999976998999999999999846
Q ss_pred -C-----CCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf -8-----6699999998513536899999999982999999999999998499959999999999999999962000357
Q 000818 686 -K-----RITSSLVNELVGVVSEEKLLELLELAMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRS 759 (1268)
Q Consensus 686 -k-----~IT~edV~eLVG~VseddIfeLLdAIlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ 759 (1268)
. .||.++|.++++....+.++++++++..++...++..+++++..|++|..|+..|..+++.
T Consensus 243 ~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~------------ 310 (353)
T 1sxj_D 243 QYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT------------ 310 (353)
T ss_dssp HHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH------------
T ss_pred CCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------------
T ss_conf 88766763369999998589999999999999853789999999999998298999999999999987------------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
Q ss_conf 897749999999999999999943059930999999998169
Q 000818 760 LTEAELERLKHALKLLSEAEKQLRLSSERCTWFTATLLQLGS 801 (1268)
Q Consensus 760 ls~~slekL~rALkiLsEaDkqLKsS~d~rl~LE~aLLkL~~ 801 (1268)
...++...+.+++..+.++|++|+.+.++++.||.++++|+.
T Consensus 311 ~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 311 NDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 246998999999999999999998678868999999999974
No 9
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=1.00 E-value=1 Score=305.58 Aligned_cols=296 Identities=13% Similarity=0.148 Sum_probs=258.9
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 99999998199997299995798419999999999960226889998887655432235998527999088874868999
Q 000818 481 QSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDFISGKSRNFMEVDGTNKKGLDRVR 560 (1268)
Q Consensus 481 qtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i~~G~s~dvIEIDaSs~~GID~Ir 560 (1268)
+.|.+.+. +++.|+||||||+|+||+++++.|++.+.|.... ...++++++. .+++
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~------------------~~~~~~~~~~-----~~~~ 62 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE------------------EHHTFSIDPN-----TDWN 62 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC------------------EEEEEECCTT-----CCHH
T ss_pred HHHHHHHH-CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCC------------------EEEEEEECCC-----CCHH
T ss_conf 99999984-6788279997793899999999999999867987------------------1578873389-----9999
Q ss_pred HHHHHHHCCCCCCCCCCEEEEEECCCC-CCHHHHHHHHHHHCCCCCCEEEEEEECCCC------CCCHHHHCCEEEEEEC
Q ss_conf 999999808999999847999958999-897989999998707999589999718999------9656654152399960
Q 000818 561 YILKHLSAGLPSASPRFKVFVIDECHL-LPSKTWLAFLKFLEEPPQRVVFIFITTDID------NVPRSIQSRCQKYLFN 633 (1268)
Q Consensus 561 eLIEev~~~p~~~~s~~KVIIIDEid~-LS~~a~naLLK~LEepp~~VVLILaTte~e------kL~paL~SRcqvI~F~ 633 (1268)
++++.+.+.| ++++++||||||+|+ ++..++++|++++|+||++++||++++..+ +++++|.+||+++.|.
T Consensus 63 ~l~~~~~~~p--lf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~ 140 (343)
T 1jr3_D 63 AIFSLCQAMS--LFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQ 140 (343)
T ss_dssp HHHHHHHHHH--HCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEEC
T ss_pred HHHHHHCCCC--CCCCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 9999861868--76688689998999998858999999998369998699997187785667439999998474389953
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH--CCCCCHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 799789999999999853999999999999997399999999999999971--786699999998513536899999999
Q 000818 634 KIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLL--GKRITSSLVNELVGVVSEEKLLELLEL 711 (1268)
Q Consensus 634 pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsll--gk~IT~edV~eLVG~VseddIfeLLdA 711 (1268)
+++..++..||..++.++|+.++++++.+|+..++||+|.+.++|++++++ ++.||.++|.++++...+.++|+|+++
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~a 220 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDA 220 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 88989999999999998599999999999999855389999999999998559998899999998750650899999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH---------------------HCCCCCCHHHHHHHHH
Q ss_conf 9829999999999999984999599999999999999999620---------------------0035789774999999
Q 000818 712 AMSSDTAETVKRARELMDSGVDPMVLMSQLASLIMDIIAGTYT---------------------IGGRSLTEAELERLKH 770 (1268)
Q Consensus 712 IlskD~~~ALk~LreLl~~GvdPl~ILs~La~~irDLLa~k~~---------------------~~~r~ls~~slekL~r 770 (1268)
+..+|...++..++.++..|++|..|+..|.++|++++..+.. ...+++..++.++|.+
T Consensus 221 i~~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~ 300 (343)
T 1jr3_D 221 LLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQ 300 (343)
T ss_dssp HTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHH
T ss_conf 98799999999999999779968999999999999999999988679999999884998889999999997599999999
Q ss_pred HHHHHHHHHHHHHCCC--CCHHHHHHHHHHCCCC
Q ss_conf 9999999999943059--9309999999981699
Q 000818 771 ALKLLSEAEKQLRLSS--ERCTWFTATLLQLGSM 802 (1268)
Q Consensus 771 ALkiLsEaDkqLKsS~--d~rl~LE~aLLkL~~~ 802 (1268)
++..|.++|.++|++. ++++.||.++++||..
T Consensus 301 ~l~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~~ 334 (343)
T 1jr3_D 301 AVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK 334 (343)
T ss_dssp HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 9999999999982899898899999999998089
No 10
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=1.00 E-value=1 Score=304.26 Aligned_cols=310 Identities=17% Similarity=0.297 Sum_probs=276.7
Q ss_pred CHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 01246420899876346849999999999981999972999957984199999999999602268899988876554322
Q 000818 458 IRSLSQKYKPIFFDELIGQNIVVQSLVNTISRGRIAPVYLFQGPRGTGKTSTAKIFSAALNCVATDQTKPCGYCRECNDF 537 (1268)
Q Consensus 458 ~~~L~eKyRP~tFdDLVGQe~vvqtL~naIk~gRia~ayLLyGPpGTGKTSLARiLAkaLnc~~~e~~~PCg~C~sC~~i 537 (1268)
..+|.+||+|..|++++||+.+++.|.+++..++.++ |||+||+|+|||++|+.+++.+.|...
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 71 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSY--------------- 71 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred CCCHHHHCCCCCHHHHHCCHHHHHHHHHHHHCCCCCE-EEEECCCCCCHHHHHHHHHHHHCCCCC---------------
T ss_conf 6748870388889998788999999999997699875-998891999999999999998369865---------------
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC-CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 359985279990888748689999999998089999-9984799995899989798999999870799958999971899
Q 000818 538 ISGKSRNFMEVDGTNKKGLDRVRYILKHLSAGLPSA-SPRFKVFVIDECHLLPSKTWLAFLKFLEEPPQRVVFIFITTDI 616 (1268)
Q Consensus 538 ~~G~s~dvIEIDaSs~~GID~IreLIEev~~~p~~~-~s~~KVIIIDEid~LS~~a~naLLK~LEepp~~VVLILaTte~ 616 (1268)
...++++++.+..+++.++++++.+......+ .+.++||||||+|.+....+++|++++++++.+++||++|+..
T Consensus 72 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 72 ----ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ----CCCEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCH
T ss_conf ----5777996276655769999999999860566778884599997854379999999999986368886399985773
Q ss_pred CCCCHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 99656654152399960799789999999999853999999999999997399999999999999971786699999998
Q 000818 617 DNVPRSIQSRCQKYLFNKIKDGDIVARLRKISAEENLNVEPDALDLIALNADGSLRDAETMLDQLSLLGKRITSSLVNEL 696 (1268)
Q Consensus 617 ekL~paL~SRcqvI~F~pls~eELv~iL~kiakkEGi~IdeeALelLA~~S~GdLRdAlnlLEkLsllgk~IT~edV~eL 696 (1268)
.++++++.+||+.+.|.+++.+++..+|..++.++++.++++++..|+..++|++|.++++|+++....+.|+.++|.++
T Consensus 148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~ 227 (323)
T 1sxj_B 148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 227 (323)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHH
T ss_pred HHCHHHHHHHCEEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 33106787332377606999999999999999975999999999999997599899999999999964897689999999
Q ss_pred HCCCCHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 513536899999999982999999999999-9984999599999999999999999620003578977499999999999
Q 000818 697 VGVVSEEKLLELLELAMSSDTAETVKRARE-LMDSGVDPMVLMSQLASLIMDIIAGTYTIGGRSLTEAELERLKHALKLL 775 (1268)
Q Consensus 697 VG~VseddIfeLLdAIlskD~~~ALk~Lre-Ll~~GvdPl~ILs~La~~irDLLa~k~~~~~r~ls~~slekL~rALkiL 775 (1268)
++......+++++++ ++...++.++.. ++..|.++..++..+..+++. +..++...+.+++..+
T Consensus 228 ~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~------------l~~~~~~~l~~~l~~l 292 (323)
T 1sxj_B 228 VDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKN------------LAQVKESVRLEMIKEI 292 (323)
T ss_dssp HTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHT------------CTTSCHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHC---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH------------CCCCCHHHHHHHHHHH
T ss_conf 789999999999965---9899999999999998699999999999999986------------2439999999999999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHCCCC
Q ss_conf 999999430599309999999981699
Q 000818 776 SEAEKQLRLSSERCTWFTATLLQLGSM 802 (1268)
Q Consensus 776 sEaDkqLKsS~d~rl~LE~aLLkL~~~ 802 (1268)
.+++.++|.+.++.+.||.++++++..
T Consensus 293 ~~~~~~l~~~~~~~l~le~l~~~~~~~ 319 (323)
T 1sxj_B 293 GLTHMRILEGVGTYLQLASMLAKIHKL 319 (323)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 999999985568289999999999964
Done!