BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000819
(1268 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P56941|NPC1_PIG Niemann-Pick C1 protein OS=Sus scrofa GN=NPC1 PE=2 SV=1
Length = 1277
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/1282 (36%), Positives = 697/1282 (54%), Gaps = 125/1282 (9%)
Query: 46 VKHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTE 102
V+ + C Y CG S K NC Y+ P + VQ LCP GNV CC
Sbjct: 18 VQVFSQSCVWYGECGIASGDKRYNCRYSGPPKPLPEDGYDLVQELCPGFFFGNVSLCCDV 77
Query: 103 DQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNNL 158
Q TL+ +Q + FL CP+C N +NLFCELTCSP QS F+NVT+ V V+N
Sbjct: 78 QQLRTLKDNLQLPLQFLSRCPSCFYNLMNLFCELTCSPRQSQFLNVTATEDYVDPVTNQT 137
Query: 159 --TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRA 213
V ++YY+ +TF +Y +C+DV+ + N +AL + G A N +W ++ +
Sbjct: 138 KTNVKELEYYVGETFANAMYNACRDVEAPSSNEKALGLLCGREAQACNATNWIEYMFNKD 197
Query: 214 AANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAP 269
+P+TI S GM PMN + C D G CSC DC S VC
Sbjct: 198 NGQ---APFTITPIFSDLPTHGMEPMNNATKGCDESVDEVTGPCSCQDC--SIVCGPKPQ 252
Query: 270 PPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAM 329
PP + L + + Y+ + +FFG FF R R F + +
Sbjct: 253 PPPPPVPWRI----LGLDAMYVIMWSSYMAFLIVFFG-AFFAVWCYRKRYFVSE--YTPI 305
Query: 330 DGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVL 389
DG+ SV ++ LG R + + ++G + R+P V+
Sbjct: 306 DGNIAFSVN-SSDKGQAFCCDPLGAAFERG----------LRRLFAQWGAFCVRHPGCVV 354
Query: 390 SLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449
S+A ++ GL+ V T P LW PGS+A EK +FD+H PF+R+E+LI+
Sbjct: 355 FFSLAFIVACSSGLVFIRVTTDPVDLWSAPGSQARREKEYFDTHFGPFFRMEQLIIRATN 414
Query: 450 DTTHGNLP----------SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-- 497
+ +H P ++ + + ++Q I+ + A+Y+ ++L DIC+ PL
Sbjct: 415 NQSHIYHPYPAGADVPFGPPLSRDILHQVLDLQTAIENITASYNNETVTLQDICLAPLSP 474
Query: 498 -GQDCATQSVLQYFKMDPKNFD----DFGGV-----EHVKYCFQHYTS-------TESCM 540
++C SVL YF+ D DF V H YC + S + C+
Sbjct: 475 YNKNCTILSVLNYFQNSHSVLDHQVGDFFFVYADYHTHFLYCVRAPASLNDASLLHDPCL 534
Query: 541 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKD 600
F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A AWE F+ K+
Sbjct: 535 GTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWESEFINFVKN 593
Query: 601 ELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSF 660
++ NLT++F +E SIE+EL RES +D TI+ISY +MF YIS+ LG S
Sbjct: 594 -----YKNPNLTISFMAERSIEDELNRESNSDLFTILISYAIMFLYISIALGHIKSCSRL 648
Query: 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHA 720
+ SK+ LG++G+++V+ SV S+G FS IGV TLI++EVIPFLVLAVGVDN+ ILV
Sbjct: 649 LVDSKISLGIAGILIVLSSVACSLGIFSYIGVPLTLIVIEVIPFLVLAVGVDNIFILVQT 708
Query: 721 VKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+R ++L+ L+ ++ L EV PS+ L+S SE +AF +G +PA FS+FA +AV
Sbjct: 709 YQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGGLSVVPAVHTFSLFAGMAV 768
Query: 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG--------IGQRKPG 830
L+DFLLQIT FV+L+ D R E R+D + C++ + A P
Sbjct: 769 LIDFLLQITCFVSLLGLDIKRQEKNRLDVVCCVQGAEDGAGVQASESCLFRFFKNSYAPL 828
Query: 831 LLARYMK---------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPP 875
LL +M+ A+ ++E GL+Q + +P DSY+ YF ++S +L GPP
Sbjct: 829 LLKDWMRPIVIAVFVGVLSFSIAVLNKVEIGLDQSLSMPDDSYVMDYFQSLSRYLHAGPP 888
Query: 876 LYFVV-KNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFL 934
+YFVV + +NY+S Q N +C C+++SL+ +I A+ + + I +SW+DD+
Sbjct: 889 VYFVVEEGHNYTSLKGQ-NMVCGGLGCNNDSLVQQIFTAAQLDNYTRIGFAPSSWIDDYF 947
Query: 935 VWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS 994
WI P++ CCR + S C ++ V C C + K RP
Sbjct: 948 DWIKPQS-SCCRVYN---------------STDQFCNASVVDPTCIRCRPLTSEGKQRPQ 991
Query: 995 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDY 1054
F LP FL+ P+ C KGGH AY+++V++ G +G V A+ F TYHT L D+
Sbjct: 992 GEDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILGNGSG-VGATYFMTYHTVLQASADF 1050
Query: 1055 VNSMRAAREFSSRVSDSLQME-----IFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFV 1109
+++M+ AR +S ++ ++ +E +FPYSVFY+++EQYL + + NL +++GA+F+
Sbjct: 1051 IDAMQKARLIASNITRTMGLEASSYRVFPYSVFYVFYEQYLTVIDDTIFNLGVSLGAIFL 1110
Query: 1110 VCLI-TTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1168
V ++ C W++ I+ + + MI+V++ GVM + I LNAVS+VNLVM+ GI+VEFC HI
Sbjct: 1111 VTVVLMGCELWATVIMCVTIAMILVNMFGVMWLWGISLNAVSLVNLVMSCGISVEFCSHI 1170
Query: 1169 THAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 1227
T AF++S+ G + R +EAL MG+SVFSGITLTK G++VL F+++++F ++YF+MYLA
Sbjct: 1171 TRAFTLSTKGSRVDRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIFYFRMYLA 1230
Query: 1228 LVLLGFLHGLVFLPVVLSVFGP 1249
+VLLG HGL+FLPV+LS GP
Sbjct: 1231 IVLLGATHGLIFLPVLLSYIGP 1252
>sp|O35604|NPC1_MOUSE Niemann-Pick C1 protein OS=Mus musculus GN=Npc1 PE=1 SV=2
Length = 1277
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/1293 (34%), Positives = 696/1293 (53%), Gaps = 161/1293 (12%)
Query: 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTI---TGNVCCTEDQFDTLR 109
C Y CG + K NC Y+ P VQ LCP + ++CC Q TL+
Sbjct: 25 CVWYGECGIATGDKRYNCKYSGPPKPLPKDGYDLVQELCPGLFFDNVSLCCDIQQLQTLK 84
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV------SNNLTVDGI 163
+ +Q + FL CP+C N + LFCELTCSP+QS F+NVT+ N V +
Sbjct: 85 SNLQLPLQFLSRCPSCFYNLMTLFCELTCSPHQSQFLNVTATEDYFDPKTQENKTNVKEL 144
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDWFAFIGRRAAANLPGS 220
+Y++ +F +Y +C+DV+ + N +AL + G A N +W ++ + +
Sbjct: 145 EYFVGQSFANAMYNACRDVEAPSSNEKALGLLCGRDARACNATNWIEYMFNKDNGQ---A 201
Query: 221 PYTIKFWPSAPELS--GMIPMNVSAYSC---ADGSLG-CSCGDCTSSPVCSSTAPPPHKS 274
P+TI P +LS GM PM + C D G CSC DC S VC
Sbjct: 202 PFTII--PVFSDLSILGMEPMRNATKGCNESVDEVTGPCSCQDC--SIVCGPKPQ--PPP 255
Query: 275 SSCSVKMGSLNAKCVDFALAILYIILVSLFFG-----WGFFHRKRERSRSF-----RMKP 324
++ L+A V + + Y+ + +FFG W HR+R + +
Sbjct: 256 PPMPWRIWGLDAMYV--IMWVTYVAFLFVFFGALLAVWC--HRRRYFVSEYTPIDSNIAF 311
Query: 325 LVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARN 384
VN+ D E + P+ R + K+G + RN
Sbjct: 312 SVNSSDKGEASCCD-------PLGAAFDDCLR---------------RMFTKWGAFCVRN 349
Query: 385 PTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELI 444
PT ++ S+A + + GL+ +V T P +LW P S+A EK +FD H PF+R E+LI
Sbjct: 350 PTCIIFFSLAFITVCSSGLVFVQVTTNPVELWSAPHSQARLEKEYFDKHFGPFFRTEQLI 409
Query: 445 LATIPDTTH--------GNLP--SIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICM 494
+ + H ++P + + + + ++Q I+ + A+Y+ ++L DIC+
Sbjct: 410 IQAPNTSVHIYEPYPAGADVPFGPPLNKEILHQVLDLQIAIESITASYNNETVTLQDICV 469
Query: 495 KPL---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYTSTES---- 538
PL ++C SVL YF+ +D + DDF H YC + S
Sbjct: 470 APLSPYNKNCTIMSVLNYFQNSHAVLDSQVGDDFYIYADYHTHFLYCVRAPASLNDTSLL 529
Query: 539 ---CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 595
C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + ++A AWEK F+
Sbjct: 530 HGPCLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTERLQRAWAWEKEFI 588
Query: 596 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTP 655
K+ ++ NLT++F++E SIE+EL RES +D T++ISY+VMF YISL LG
Sbjct: 589 SFVKN-----YKNPNLTISFTAERSIEDELNRESNSDVFTVIISYVVMFLYISLALGHIQ 643
Query: 656 HLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715
S + SK+ LG++G+++V+ SV S+G FS +G+ TLI++EVIPFLVLAVGVDN+
Sbjct: 644 SCSRLLVDSKISLGIAGILIVLSSVACSLGIFSYMGMPLTLIVIEVIPFLVLAVGVDNIF 703
Query: 716 ILVHAVKRQQL--ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMF 773
ILV +R + E L+ ++ L EV P++ L+S SE AF G+ MPA FS+F
Sbjct: 704 ILVQTYQRDERLQEETLDQQLGRILGEVAPTMFLSSFSETSAFFFGALSSMPAVHTFSLF 763
Query: 774 AALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQR------ 827
A +AVL+DFLLQIT FV+L+ D R E +D + C++ +D G G
Sbjct: 764 AGMAVLIDFLLQITCFVSLLGLDIKRQEKNHLDILCCVR------GADDGQGSHASESYL 817
Query: 828 --------KPGLLARYMK---------------ALCTRIEPGLEQKIVLPRDSYLQGYFN 864
P LL +++ A+ +++ GL+Q + +P DSY+ YF
Sbjct: 818 FRFFKNYFAPLLLKDWLRPIVVAVFVGVLSFSVAVVNKVDIGLDQSLSMPNDSYVIDYFK 877
Query: 865 NISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIA 923
+++++L GPP+YFV++ YNYSS Q N +C CD++SL+ +I A+ + + +
Sbjct: 878 SLAQYLHSGPPVYFVLEEGYNYSSRKGQ-NMVCGGMGCDNDSLVQQIFNAAELDTYTRVG 936
Query: 924 KPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCF 983
+SW+DD+ W+SP++ CCR + C ++ + C C
Sbjct: 937 FAPSSWIDDYFDWVSPQS-SCCRLYN---------------VTHQFCNASVMDPTCVRCR 980
Query: 984 HHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRT 1043
+ K RP +F + LP FL+ P+ C KGGH AY ++V++ G ++ + A+ F T
Sbjct: 981 PLTPEGKQRPQGKEFMKFLPMFLSDNPNPKCGKGGHAAYGSAVNIVG-DDTYIGATYFMT 1039
Query: 1044 YHTPLNRQIDYVNSMRAAREFSSRVSDSLQ-----MEIFPYSVFYMYFEQYLDIWRTALI 1098
YHT L DY ++M+ AR +S ++++++ +FPYSVFY+++EQYL I +
Sbjct: 1040 YHTILKTSADYTDAMKKARLIASNITETMRSKGSDYRVFPYSVFYVFYEQYLTIIDDTIF 1099
Query: 1099 NLAIAIGAVFVVCLIT-TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMA 1157
NL++++G++F+V L+ C WS+ I+ + + MI+V++ GVM + I LNAVS+VNLVM+
Sbjct: 1100 NLSVSLGSIFLVTLVVLGCELWSAVIMCITIAMILVNMFGVMWLWGISLNAVSLVNLVMS 1159
Query: 1158 VGIAVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEV 1216
GI+VEFC HIT AF++S+ G + R +EAL MG+SVFSGITLTK G++VL F+++++
Sbjct: 1160 CGISVEFCSHITRAFTMSTKGSRVSRAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQI 1219
Query: 1217 FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
F ++YF+MYLA+VLLG HGL+FLPV+LS GP
Sbjct: 1220 FEIFYFRMYLAMVLLGATHGLIFLPVLLSYIGP 1252
>sp|O15118|NPC1_HUMAN Niemann-Pick C1 protein OS=Homo sapiens GN=NPC1 PE=1 SV=2
Length = 1278
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 461/1289 (35%), Positives = 687/1289 (53%), Gaps = 152/1289 (11%)
Query: 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT-GNV--CCTEDQFDTLR 109
C Y CG K NC Y+ P VQ LCP GNV CC Q TL+
Sbjct: 25 CVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGNVSLCCDVRQLQTLK 84
Query: 110 TQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTS----VSKVSNN--LTVDGI 163
+Q + FL CP+C N LNLFCELTCSP QS F+NVT+ V V+N V +
Sbjct: 85 DNLQLPLQFLSRCPSCFYNLLNLFCELTCSPRQSQFLNVTATEDYVDPVTNQTKTNVKEL 144
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG---GAQNFKDWFAFIGRRAAANLPGS 220
YY+ +F +Y +C+DV+ + N +AL + G A N +W ++ + +
Sbjct: 145 QYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDADACNATNWIEYMFNKDNGQ---A 201
Query: 221 PYTIKFWPSAPELSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSS 276
P+TI S + GM PMN + C + + CSC DC S VC PP +
Sbjct: 202 PFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDC--SIVCGPKPQPPPPPAP 259
Query: 277 CSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF--RMKPL-------VN 327
++ L + + I Y+ + +FFG FF R R F P+ VN
Sbjct: 260 WTI----LGLDAMYVIMWITYMAFLLVFFG-AFFAVWCYRKRYFVSEYTPIDSNIAFSVN 314
Query: 328 AMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTL 387
A D E + P+ +G + + ++G + RNP
Sbjct: 315 ASDKGEASCCD-------PVSAAF---------------EGCLRRLFTRWGSFCVRNPGC 352
Query: 388 VLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILAT 447
V+ S+ + GL+ V T P LW P S+A EK +FD H PF+R E+LI+
Sbjct: 353 VIFFSLVFITACSSGLVFVRVTTNPVDLWSAPSSQARLEKEYFDQHFGPFFRTEQLIIRA 412
Query: 448 IPDTTHGNLPSIVTES-------NIKLLFEI---QKKIDGLRANYSGSMISLTDICMKPL 497
H P +I++L ++ Q I+ + A+Y ++L DIC+ PL
Sbjct: 413 PLTDKHIYQPYPSGADVPFGPPLDIQILHQVLDLQIAIENITASYDNETVTLQDICLAPL 472
Query: 498 ---GQDCATQSVLQYFK-----MDPKNFDDF----GGVEHVKYCFQHYTS-------TES 538
+C SVL YF+ +D K DDF H YC + S +
Sbjct: 473 SPYNTNCTILSVLNYFQNSHSVLDHKKGDDFFVYADYHTHFLYCVRAPASLNDTSLLHDP 532
Query: 539 CMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLA 598
C+ F GP+ P LGG+ NY+ A+A V+T+PVNN + + + ++A AWEK F+
Sbjct: 533 CLGTFGGPVFPWLVLGGYDDQNYNNATALVITFPVNNYYN-DTEKLQRAQAWEKEFINFV 591
Query: 599 KDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLS 658
K+ ++ NLT++F++E SIE+EL RES +D T+VISY +MF YISL LG
Sbjct: 592 KN-----YKNPNLTISFTAERSIEDELNRESDSDVFTVVISYAIMFLYISLALGHMKSCR 646
Query: 659 SFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV 718
+ SKV LG++G+++V+ SV S+G FS IG+ TLI++EVIPFLVLAVGVDN+ ILV
Sbjct: 647 RLLVDSKVSLGIAGILIVLSSVACSLGVFSYIGLPLTLIVIEVIPFLVLAVGVDNIFILV 706
Query: 719 HAVKR-QQLE-LPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAAL 776
A +R ++L+ L+ ++ L EV PS+ L+S SE +AF +G+ MPA FS+FA L
Sbjct: 707 QAYQRDERLQGETLDQQLGRVLGEVAPSMFLSSFSETVAFFLGALSVMPAVHTFSLFAGL 766
Query: 777 AVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS---SSYADSDKGI-----GQRK 828
AV +DFLLQIT FV+L+ D R E R+D C++ + +S S+ +
Sbjct: 767 AVFIDFLLQITCFVSLLGLDIKRQEKNRLDIFCCVRGAEDGTSVQASESCLFRFFKNSYS 826
Query: 829 PGLLARYMK---------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG 873
P LL +M+ A+ +++ GL+Q + +P DSY+ YF +IS++L G
Sbjct: 827 PLLLKDWMRPIVIAIFVGVLSFSIAVLNKVDIGLDQSLSMPDDSYMVDYFKSISQYLHAG 886
Query: 874 PPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDF 933
PP+YFV++ + + S+ N +C C+++SL+ +I A+ + + I +SW+DD+
Sbjct: 887 PPVYFVLEEGHDYTSSKGQNMVCGGMGCNNDSLVQQIFNAAQLDNYTRIGFAPSSWIDDY 946
Query: 934 LVWISPEAFGCCR------KFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSD 987
W+ P++ CCR +F N S P C C +
Sbjct: 947 FDWVKPQS-SCCRVDNITDQFCNASVVDP---------------------ACVRCRPLTP 984
Query: 988 LLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTP 1047
K RP F LP FL+ P+ C KGGH AY+++V++ V A+ F TYHT
Sbjct: 985 EGKQRPQGGDFMRFLPMFLSDNPNPKCGKGGHAAYSSAVNILLGHGTRVGATYFMTYHTV 1044
Query: 1048 LNRQIDYVNSMRAAREFSSRVSDSLQM-----EIFPYSVFYMYFEQYLDIWRTALINLAI 1102
L D++++++ AR +S V++++ + +FPYSVFY+++EQYL I + NL +
Sbjct: 1045 LQTSADFIDALKKARLIASNVTETMGINGSAYRVFPYSVFYVFYEQYLTIIDDTIFNLGV 1104
Query: 1103 AIGAVFVVCLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIA 1161
++GA+F+V ++ C WS+ I+ + M++V++ GVM + I LNAVS+VNLVM+ GI+
Sbjct: 1105 SLGAIFLVTMVLLGCELWSAVIMCATIAMVLVNMFGVMWLWGISLNAVSLVNLVMSCGIS 1164
Query: 1162 VEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1220
VEFC HIT AF+VS G + +R +EAL MG+SVFSGITLTK G++VL F+++++F ++
Sbjct: 1165 VEFCSHITRAFTVSMKGSRVERAEEALAHMGSSVFSGITLTKFGGIVVLAFAKSQIFQIF 1224
Query: 1221 YFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
YF+MYLA+VLLG HGL+FLPV+LS GP
Sbjct: 1225 YFRMYLAMVLLGATHGLIFLPVLLSYIGP 1253
>sp|Q6T3U3|NPCL1_RAT Niemann-Pick C1-like protein 1 OS=Rattus norvegicus GN=Npc1l1 PE=1
SV=1
Length = 1331
Score = 592 bits (1525), Expect = e-168, Method: Compositional matrix adjust.
Identities = 447/1314 (34%), Positives = 665/1314 (50%), Gaps = 158/1314 (12%)
Query: 47 KHVEEFCAMYDICGARSDRK-------VLNCPYNIPSVKPDDLLSSKVQSLCPTI----- 94
KH C Y+ CG + ++C N P+ + +Q +CP +
Sbjct: 26 KHEAGVCTFYEECGKNPELSGGLTSLSNVSCLSNTPARHVTGEHLALLQRICPRLYNGPN 85
Query: 95 TGNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSK- 153
T CC+ Q +L + + L CPAC NF++L C TCSP+QSLFINVT V +
Sbjct: 86 TTFACCSTKQLLSLESSMSITKALLTRCPACSDNFVSLHCHNTCSPDQSLFINVTRVVER 145
Query: 154 -VSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAF 208
V + + +F + YESC V+ + A+ + G N + W F
Sbjct: 146 GAGEPPAVVAYEAFYQRSFAEKAYESCSQVRIPAAASLAVGSMCGVYGSALCNAQRWLNF 205
Query: 209 IGRRAAANLPGSPYTIKFW---PSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSS 261
G +P I F P G+ P+N C D S CSC DC +S
Sbjct: 206 QGDTGNGL---APLDITFHLLEPGQALPDGIQPLNGKIAPCNESQGDDSAVCSCQDCAAS 262
Query: 262 -PVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF 320
PV PP ++ S MG + AL I++ + L R R S
Sbjct: 263 CPVI-----PPPEALRPSFYMGRMPGW---LALIIIFTAVFVLLSAV----LVRLRVVSN 310
Query: 321 RMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKW 380
R K N +G Q+ LP + ++ +P T + F++ +G
Sbjct: 311 RNK---NKAEGP-------QEAPKLPHKHKL--SPHT-----------ILGRFFQNWGTR 347
Query: 381 VARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI 440
VA P VL+LS +V+ L GL E+ T P +LW P S+A +EK F D H PF+R
Sbjct: 348 VASWPLTVLALSFIVVIALAAGLTFIELTTDPVELWSAPKSQARKEKSFHDEHFGPFFRT 407
Query: 441 EELILATIPDTTHG---------NLPSIVTESNIKLLFEIQKKIDGLR--ANYSGSMISL 489
++ + +++ N I++ + L E+Q+++ L+ + + ISL
Sbjct: 408 NQIFVTARNRSSYKYDSLLLGSKNFSGILSLDFLLELLELQERLRHLQVWSPEAERNISL 467
Query: 490 TDICMKPLG------QDCATQSVLQYFK------MDPKNFDDFGGV------EHVKYC-- 529
DIC PL DC S+LQYF+ M N G +H YC
Sbjct: 468 QDICYAPLNPYNTSLSDCCVNSLLQYFQNNRTLLMLTANQTLNGQTSLVDWKDHFLYCAN 527
Query: 530 ----FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNET 584
F+ TS SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN +
Sbjct: 528 APLTFKDGTSLALSCMADYGAPVFPFLAVGGYQGTDYSEAEALIITFSLNN-YPADDPRM 586
Query: 585 KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMF 644
+A WE+AF L + E S +AFS+E S+E+E+ R + D +SY+++F
Sbjct: 587 AQAKLWEEAF--LKEMESFQRNTSDKFQVAFSAERSLEDEINRTTIQDLPVFAVSYIIVF 644
Query: 645 AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPF 704
YISL LG S + SK LGL GV++V+ +VL ++GF+S +GV S+L+I++V+PF
Sbjct: 645 LYISLALGSYSRCSRVAVESKATLGLGGVIVVLGAVLAAMGFYSYLGVPSSLVIIQVVPF 704
Query: 705 LVLAVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLSEVLAFAVGSF 761
LVLAVG DN+ I V +R +P E R I L V PS+ L SLSE + F +G+
Sbjct: 705 LVLAVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLSEAICFFLGAL 763
Query: 762 IPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSD 821
PMPA R F++ + LA++LDFLLQ+TAFVAL+ D R E R D + C +
Sbjct: 764 TPMPAVRTFALTSGLAIILDFLLQMTAFVALLSLDSKRQEASRPDVLCCFSTRKLPPPKE 823
Query: 822 K-GIGQR------KPGLLARYMKA---------------LCTRIEPGLEQKIVLPRDSYL 859
K G+ R P LL R+++ L I GL+Q++ LP+DSYL
Sbjct: 824 KEGLLLRFFRKIYAPFLLHRFIRPVVMLLFLTLFGANLYLMCNINVGLDQELALPKDSYL 883
Query: 860 QGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQ 918
YF ++ +L +GPP+YFV + +N+SSE+ N CS + C S SL +I AS P
Sbjct: 884 IDYFLFLNRYLEVGPPVYFVTTSGFNFSSEA-GMNATCSSAGCKSFSLTQKIQYASEFPD 942
Query: 919 SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD 978
SY+A A+SW+DDF+ W++P + CCR + G P D+ CPS +S C +
Sbjct: 943 QSYVAIAASSWVDDFIDWLTPSS-SCCRLYIRG---PHKDE--FCPSTDTSFNCLKNCMN 996
Query: 979 CTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQA 1038
T L RP+ QF + LPWFLN P+ C KGG AY SV+L +G V A
Sbjct: 997 RT-------LGPVRPTAEQFHKYLPWFLNDPPNIRCPKGGLAAYRTSVNLS--SDGQVIA 1047
Query: 1039 SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------MEIFPYSVFYMYFEQYL 1090
S F YH PL D+ ++RA+R ++ ++ L+ E+FPY++ ++++QYL
Sbjct: 1048 SQFMAYHKPLRNSQDFTEALRASRLLAANITADLRKVPGTDPNFEVFPYTISNVFYQQYL 1107
Query: 1091 DIWRTALINLAIAIGAVFVVC-LITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAV 1149
+ + LA+ FVVC L+ S + LL + MI+VD +G+MA+ I NAV
Sbjct: 1108 TVLPEGIFTLALCFVPTFVVCYLLLGLDMCSGILNLLSIIMILVDTIGLMAVWGISYNAV 1167
Query: 1150 SVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208
S++NLV AVG++VEF HIT +F+VS+ + +R K+A MG++VF+G+ +T G+++
Sbjct: 1168 SLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATVFMGSAVFAGVAMTNFPGILI 1227
Query: 1209 LCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEER 1262
L F++ ++ +++F++ L + LLG LHGLVFLPVVLS GP LV QEE+
Sbjct: 1228 LGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALV--QEEK 1279
>sp|Q9UHC9|NPCL1_HUMAN Niemann-Pick C1-like protein 1 OS=Homo sapiens GN=NPC1L1 PE=1 SV=2
Length = 1359
Score = 575 bits (1482), Expect = e-163, Method: Compositional matrix adjust.
Identities = 449/1342 (33%), Positives = 673/1342 (50%), Gaps = 188/1342 (14%)
Query: 48 HVEEFCAMYDICGARSDRK-------VLNCPYNIPSVK--PDDLLSSKVQSLCPTI-TG- 96
H +CA YD CG + ++C N P+ K D L+ +Q +CP + TG
Sbjct: 28 HQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLI--LLQKICPRLYTGP 85
Query: 97 --NVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKV 154
CC+ Q +L + L CPAC NF+NL C TCSPNQSLFINVT V+++
Sbjct: 86 NTQACCSAKQLVSLEASLSITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQL 145
Query: 155 SNNL--TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----GGGAQNFKDWFAF 208
V + + +F + Y+SC V+ T A+ + G N + W F
Sbjct: 146 GAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNAQRWLNF 205
Query: 209 IGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC----ADGSLGCSCGDCTSSPVC 264
G P P SG+ P+N C D CSC DC +S C
Sbjct: 206 QGDTGNGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCAAS--C 263
Query: 265 SSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKP 324
+ A P ++ + +G + V L IIL S+F FR+ P
Sbjct: 264 PAIARP--QALDSTFYLGQMPGSLV------LIIILCSVFAVVTILLV------GFRVAP 309
Query: 325 LVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARN 384
A D S++ V+ +K +L +++ S + F++ +G WVA
Sbjct: 310 ---ARDKSKM--VDPKKGTSL------------SDKLSFS-THTLLGQFFQGWGTWVASW 351
Query: 385 PTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELI 444
P +L LS+ V+ L GL+ E+ T P +LW P S+A EK F D H PF+R ++I
Sbjct: 352 PLTILVLSVIPVVALAAGLVFTELTTDPVELWSAPNSQARSEKAFHDQHFGPFFRTNQVI 411
Query: 445 LATIPDTTH----------GNLPSIVTESNIKLLFEIQKKIDGLR--ANYSGSMISLTDI 492
L T P+ + N I+ + L E+Q+++ L+ + + ISL DI
Sbjct: 412 L-TAPNRSSYRYDSLLLGPKNFSGILDLDLLLELLELQERLRHLQVWSPEAQRNISLQDI 470
Query: 493 CMKPLGQD------CATQSVLQYFKMD------PKNFDDFGGV------EHVKYC----- 529
C PL D C S+LQYF+ + N G +H YC
Sbjct: 471 CYAPLNPDNTSLYDCCINSLLQYFQNNRTLLLLTANQTLMGQTSQVDWKDHFLYCANAPL 530
Query: 530 -FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKA 587
F+ T+ SCM+ + P+ P A+GG+ G +YSEA A ++T+ +NN + +A
Sbjct: 531 TFKDGTALALSCMADYGAPVFPFLAIGGYKGKDYSEAEALIMTFSLNNYPAGD-PRLAQA 589
Query: 588 VAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYI 647
WE+AF++ + M +T F +E S+E+E+ R + D SY+V+F YI
Sbjct: 590 KLWEEAFLEEMRAFQRRMAGMFQVT--FMAERSLEDEINRTTAEDLPIFATSYIVIFLYI 647
Query: 648 SLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVL 707
SL LG S + SK LGL GV +V+ +V+ ++GFFS +G++S+L+I++V+PFLVL
Sbjct: 648 SLALGSYSSWSRVMVDSKATLGLGGVAVVLGAVMAAMGFFSYLGIRSSLVILQVVPFLVL 707
Query: 708 AVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765
+VG DN+ I V +R ++ P E I AL V PS+ L SLSE + F +G+ PMP
Sbjct: 708 SVGADNIFIFVLEYQRLPRRPGEPREVHIGRALGRVAPSMLLCSLSEAICFFLGALTPMP 767
Query: 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIG 825
A R F++ + LAV+LDFLLQ++AFVAL+ D R E R+D C+K G
Sbjct: 768 AVRTFALTSGLAVILDFLLQMSAFVALLSLDSKRQEASRLDVCCCVK-----PQELPPPG 822
Query: 826 QRKPGLLARYMKALC-------TR--------------------IEPGLEQKIVLPRDSY 858
Q + LL + KA TR I GL+Q++ LP+DSY
Sbjct: 823 QGEGLLLGFFQKAYAPFLLHWITRGVVLLLFLALFGVSLYSMCHISVGLDQELALPKDSY 882
Query: 859 LQGYFNNISEHLRIGPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP 917
L YF ++ + +G P+YFV YN+SSE+ N +CS + C++ S +I A+ P
Sbjct: 883 LLDYFLFLNRYFEVGAPVYFVTTLGYNFSSEAGM-NAICSSAGCNNFSFTQKIQYATEFP 941
Query: 918 QSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCK 977
+ SY+A PA+SW+DDF+ W++P + CCR + +G P D+ CP S+ S K
Sbjct: 942 EQSYLAIPASSWVDDFIDWLTPSS--CCRLYISG---PNKDK--FCP---STVNSLNCLK 991
Query: 978 DCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG------- 1030
+C + S RPS QF + LPWFLN P+ C KGG AY+ SV+L
Sbjct: 992 NCMSITMGS----VRPSVEQFHKYLPWFLNDRPNIKCPKGGLAAYSTSVNLTSDGQVLDT 1047
Query: 1031 --------YENGIVQA----------SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL 1072
+G + A S F YH PL DY ++RAARE ++ ++ L
Sbjct: 1048 VAILSPRLEYSGTISAHCNLYLLDSTSRFMAYHKPLKNSQDYTEALRAARELAANITADL 1107
Query: 1073 Q--------MEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVV-CLITTCSFWSSAI 1123
+ E+FPY++ +++EQYL I L L++ + F V CL+ S +
Sbjct: 1108 RKVPGTDPAFEVFPYTITNVFYEQYLTILPEGLFMLSLCLVPTFAVSCLLLGLDLRSGLL 1167
Query: 1124 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKN-QR 1182
LL + MI+VD +G MA+ I NAVS++NLV AVG++VEF HIT +F++S+ +R
Sbjct: 1168 NLLSIVMILVDTVGFMALWGISYNAVSLINLVSAVGMSVEFVSHITRSFAISTKPTWLER 1227
Query: 1183 MKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 1242
KEA +MG++VF+G+ +T L G++VL ++ ++ +++F++ L + LLG LHGLVFLPV
Sbjct: 1228 AKEATISMGSAVFAGVAMTNLPGILVLGLAKAQLIQIFFFRLNLLITLLGLLHGLVFLPV 1287
Query: 1243 VLSVFGP---PSRCMLVERQEE 1261
+LS GP P+ + +R EE
Sbjct: 1288 ILSYVGPDVNPALALEQKRAEE 1309
>sp|Q6T3U4|NPCL1_MOUSE Niemann-Pick C1-like protein 1 OS=Mus musculus GN=Npc1l1 PE=2 SV=1
Length = 1333
Score = 563 bits (1451), Expect = e-159, Method: Compositional matrix adjust.
Identities = 439/1323 (33%), Positives = 664/1323 (50%), Gaps = 161/1323 (12%)
Query: 40 NSVAGEV---KHVEEFCAMYDICGARSDRK-------VLNCPYNIPS--VKPDDLLSSKV 87
NS GE+ H FC Y+ CG + ++C N P+ V D L + +
Sbjct: 16 NSAQGELYTPTHKAGFCTFYEECGKNPELSGGLTSLSNISCLSNTPARHVTGDHL--ALL 73
Query: 88 QSLCPTITGN-----VCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQ 142
Q +CP + CC+ Q +L + + L CPAC NF+++ C TCSP+Q
Sbjct: 74 QRVCPRLYNGPNDTYACCSTKQLVSLDSSLSITKALLTRCPACSENFVSIHCHNTCSPDQ 133
Query: 143 SLFINVTSVSKVSNNL--TVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFI----G 196
SLFINVT V + V + + +F + YESC V+ + A+ + G
Sbjct: 134 SLFINVTRVVQRDPGQLPAVVAYEAFYQRSFAEKAYESCSRVRIPAAASLAVGSMCGVYG 193
Query: 197 GGAQNFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSC----ADGSLG 252
N + W F G P P GM P++ C + S
Sbjct: 194 SALCNAQRWLNFQGDTGNGLAPLDITFHLLEPGQALADGMKPLDGKITPCNESQGEDSAA 253
Query: 253 CSCGDCTSSPVCSSTAPPPHKSSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHR 312
CSC DC +S C PPP S MG + + II+ + F
Sbjct: 254 CSCQDCAAS--CPVIPPPPALRPS--FYMGRMPGW-------LALIIIFTAVFVLLSVVL 302
Query: 313 KRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSN 372
R S R K N GS Q+ NLP + + +P T +
Sbjct: 303 VYLRVASNRNK---NKTAGS-------QEAPNLPRKRRF--SPHT-----------VLGR 339
Query: 373 FYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDS 432
F+ +G VA P VL+LS +V+ L +GL E+ T P +LW P S+A +EK F D
Sbjct: 340 FFESWGTRVASWPLTVLALSFIVVIALSVGLTFIELTTDPVELWSAPKSQARKEKAFHDE 399
Query: 433 HLAPFYRIEELILATIPDTTHG---------NLPSIVTESNIKLLFEIQKKIDGLR--AN 481
H PF+R ++ + +++ N I++ ++ L E+Q+++ L+ ++
Sbjct: 400 HFGPFFRTNQIFVTAKNRSSYKYDSLLLGPKNFSGILSLDLLQELLELQERLRHLQVWSH 459
Query: 482 YSGSMISLTDICMKPLG------QDCATQSVLQYFKMD--------------PKNFDDFG 521
+ ISL DIC PL DC S+LQYF+ + + D+
Sbjct: 460 EAQRNISLQDICYAPLNPHNTSLTDCCVNSLLQYFQNNHTLLLLTANQTLNGQTSLVDWK 519
Query: 522 GVEHVKYC------FQHYTSTE-SCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVN 574
+H YC ++ T+ SC++ + P+ P A+GG+ G +YSEA A ++T+ +N
Sbjct: 520 --DHFLYCANAPLTYKDGTALALSCIADYGAPVFPFLAVGGYQGTDYSEAEALIITFSIN 577
Query: 575 NAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAI 634
N + A WE+AF L + + + +AFS+E S+E+E+ R + D
Sbjct: 578 N-YPADDPRMAHAKLWEEAF--LKEMQSFQRSTADKFQIAFSAERSLEDEINRTTIQDLP 634
Query: 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694
ISYL++F YISL LG S + SK LGL GV +V+ +V+ ++GF+S +GV S
Sbjct: 635 VFAISYLIVFLYISLALGSYSRWSRVAVDSKATLGLGGVAVVLGAVVAAMGFYSYLGVPS 694
Query: 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETR---ISNALVEVGPSITLASLS 751
+L+I++V+PFLVLAVG DN+ I V +R +P E R I L V PS+ L SLS
Sbjct: 695 SLVIIQVVPFLVLAVGADNIFIFVLEYQRLP-RMPGEQREAHIGRTLGSVAPSMLLCSLS 753
Query: 752 EVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
E + F +G+ MPA R F++ + LA++ DFLLQ+TAFVAL+ D R E R D + C
Sbjct: 754 EAICFFLGALTSMPAVRTFALTSGLAIIFDFLLQMTAFVALLSLDSKRQEASRPDVVCCF 813
Query: 812 KLSSSYADSDKGIGQ-----RK---PGLLARYMKA---------------LCTRIEPGLE 848
S + + G RK P LL R+++ L I GL+
Sbjct: 814 S-SRNLPPPKQKEGLLLCFFRKIYTPFLLHRFIRPVVLLLFLVLFGANLYLMCNISVGLD 872
Query: 849 QKIVLPRDSYLQGYFNNISEHLRIGPPLYF-VVKNYNYSSESRQTNQLCSISQCDSNSLL 907
Q + LP+DSYL YF ++ +L +GPP+YF YN+S+E+ N +CS + C+S SL
Sbjct: 873 QDLALPKDSYLIDYFLFLNRYLEVGPPVYFDTTSGYNFSTEAGM-NAICSSAGCESFSLT 931
Query: 908 NEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQ 967
+I AS P SY+A A+SW+DDF+ W++P + CCR +T G P D+ CPS
Sbjct: 932 QKIQYASEFPNQSYVAIAASSWVDDFIDWLTPSS-SCCRIYTRG---PHKDE--FCPSTD 985
Query: 968 SSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVD 1027
+S C + T L RP+T QF + LPWFLN P+ C KGG AY SV+
Sbjct: 986 TSFNCLKNCMNRT-------LGPVRPTTEQFHKYLPWFLNDTPNIRCPKGGLAAYRTSVN 1038
Query: 1028 LKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQ--------MEIFPY 1079
L +G + AS F YH PL D+ ++RA+R ++ ++ L+ E+FPY
Sbjct: 1039 LS--SDGQIIASQFMAYHKPLRNSQDFTEALRASRLLAANITAELRKVPGTDPNFEVFPY 1096
Query: 1080 SVFYMYFEQYLDIWRTALINLAIAIGAVFVVC-LITTCSFWSSAIILLVLTMIVVDLMGV 1138
++ ++++QYL + + LA+ FVVC L+ S + LL + MI+VD +G+
Sbjct: 1097 TISNVFYQQYLTVLPEGIFTLALCFVPTFVVCYLLLGLDIRSGILNLLSIIMILVDTIGL 1156
Query: 1139 MAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSG 1197
MA+ I NAVS++NLV AVG++VEF HIT +F+VS+ + +R K+A MG++VF+G
Sbjct: 1157 MAVWGISYNAVSLINLVTAVGMSVEFVSHITRSFAVSTKPTRLERAKDATIFMGSAVFAG 1216
Query: 1198 ITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE 1257
+ +T G+++L F++ ++ +++F++ L + LLG LHGLVFLPVVLS GP LV
Sbjct: 1217 VAMTNFPGILILGFAQAQLIQIFFFRLNLLITLLGLLHGLVFLPVVLSYLGPDVNQALVL 1276
Query: 1258 RQE 1260
++
Sbjct: 1277 EEK 1279
>sp|Q12200|NPC1_YEAST Niemann-Pick type C-related protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=NCR1 PE=1 SV=1
Length = 1170
Score = 530 bits (1366), Expect = e-149, Method: Compositional matrix adjust.
Identities = 373/1211 (30%), Positives = 608/1211 (50%), Gaps = 125/1211 (10%)
Query: 53 CAMYDICGARSD-RKVLNCPYNIPSVKPDDLLSSKVQSLCPTITGN-------VCCTEDQ 104
CAMY CG +S L CP +P +LS + L + G CCT+DQ
Sbjct: 23 CAMYGNCGKKSVFGNELPCP--VPRSFEPPVLSDETSKLLVEVCGEEWKEVRYACCTKDQ 80
Query: 105 FDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNLT-VDGI 163
LR +Q+A P + CPACL+NF NLFC TC+ +Q F+N+T V K + V +
Sbjct: 81 VVALRDNLQKAQPLISSCPACLKNFNNLFCHFTCAADQGRFVNITKVEKSKEDKDIVAEL 140
Query: 164 DYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQNFKDWFAFIGRRAAANLPGSPYT 223
D ++ ++ Y+SCK++KF N A+D IGGGA+N+ + F+G A L GSP+
Sbjct: 141 DVFMNSSWASEFYDSCKNIKFSATNGYAMDLIGGGAKNYSQFLKFLGD-AKPMLGGSPFQ 199
Query: 224 IKF-WPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMG 282
I + + A E N Y+C D C+C DC S C P K C K+G
Sbjct: 200 INYKYDLANEEKEWQEFNDEVYACDDAQYKCACSDCQES--CPHLKP--LKDGVC--KVG 253
Query: 283 SLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSF---RMKPLVNAMDGSELHSVER 339
L C ++ I Y I F W + ++++ + P ++D SE + E
Sbjct: 254 PL--PCFSLSVLIFYTICALFAFMWYYLCKRKKNGAMIVDDDIVPESGSLDESETNVFES 311
Query: 340 QKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLL 399
E + G ++N + K G++ NP +L ++ + +
Sbjct: 312 FNNET-------------------NFFNGKLANLFTKVGQFSVENPYKILITTVFSIFVF 352
Query: 400 CLGLIRF-EVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPS 458
+ ++ +ET P LWV S +EK +FD + PFYR E++ +
Sbjct: 353 SFIIFQYATLETDPINLWVSKNSEKFKEKEYFDDNFGPFYRTEQIFVV-------NETGP 405
Query: 459 IVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD-CATQSVLQYFKMDPKNF 517
+++ + F+++ I S I D+C +P C +S QYF+ N
Sbjct: 406 VLSYETLHWWFDVENFIT--EELQSSENIGYQDLCFRPTEDSTCVIESFTQYFQGALPNK 463
Query: 518 DDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAV 577
D + ++ C + + C+ F+ PL + FS ++ A AFVVT + N
Sbjct: 464 DSWK--RELQECGKFPVN---CLPTFQQPLKTNLL---FSDDDILNAHAFVVTLLLTN-- 513
Query: 578 DREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIV 637
T+ A WE+ + D +P + L ++F++E S+E+EL + D T+
Sbjct: 514 -----HTQSANRWEERLEEYLLDLKVP----EGLRISFNTEISLEKELNNNN--DISTVA 562
Query: 638 ISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697
ISYL+MF Y + L +++LLG+SG+++V+ S++ + GF + G+KSTLI
Sbjct: 563 ISYLMMFLYATWALRRKDG------KTRLLLGISGLLIVLASIVCAAGFLTLFGLKSTLI 616
Query: 698 IMEVIPFLVLAVGVDNMCILVHAVKR---QQLELPLETRISNALVEVGPSITLASLSEVL 754
I EVIPFL+LA+G+DN+ ++ H R Q+ E ++ +I +A+ + PSI ++ L +
Sbjct: 617 IAEVIPFLILAIGIDNIFLITHEYDRNCEQKPEYSIDQKIISAIGRMSPSILMSLLCQTG 676
Query: 755 AFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS 814
F + +F+ MPA F++++ ++V+ + +LQ+TA+V+++ R+ K++ K S
Sbjct: 677 CFLIAAFVTMPAVHNFAIYSTVSVIFNGVLQLTAYVSILSLYEKRSNYKQITGNEETKES 736
Query: 815 SSYADSDKGIGQRKPGLL---ARYMKALC--TRIEPGLEQKIVLPRDSYLQGYFNNISEH 869
K + Q++ ++ A + +L I+ GL+Q + +P+DSYL YF ++
Sbjct: 737 FLKTFYFKMLTQKRLIIIIFSAWFFTSLVFLPEIQFGLDQTLAVPQDSYLVDYFKDVYSF 796
Query: 870 LRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASW 929
L +GPP+Y VVKN + + Q + C+ +SL N + + S I +P A+W
Sbjct: 797 LNVGPPVYMVVKNLDLTKRQNQQKICGKFTTCERDSLANVLEQER---HRSTITEPLANW 853
Query: 930 LDDFLVWISPEAFGCCR-KFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDL 988
LDD+ ++++P+ CCR K CPP PS + C TCF
Sbjct: 854 LDDYFMFLNPQNDQCCRLKKGTDEVCPPS-----FPS-----------RRCETCFQQGSW 897
Query: 989 ---LKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYH 1045
+ P F E L ++NA PS C GG Y+ ++ Y V AS FRT H
Sbjct: 898 NYNMSGFPEGKDFMEYLSIWINA-PSDPCPLGGRAPYSTAL---VYNETSVSASVFRTAH 953
Query: 1046 TPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAI 1104
PL Q D++ + R+S S ++++F YS FY++F QY + L + AI
Sbjct: 954 HPLRSQKDFIQAYSDG----VRISSSFPELDMFAYSPFYIFFVQYQTLGPLTLKLIGSAI 1009
Query: 1105 GAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEF 1164
+F + + + SS ++ LV+TMI+VD+ +MA+L I LNAVS+VNL++ VG+ VEF
Sbjct: 1010 ILIFFISSVFLQNIRSSFLLALVVTMIIVDIGALMALLGISLNAVSLVNLIICVGLGVEF 1069
Query: 1165 CVHITHAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1220
CVHI +F+V + D N R+ +L T+G SV GITLTK +GV VL F+++++F V+
Sbjct: 1070 CVHIVRSFTVVPSETKKDANSRVLYSLNTIGESVIKGITLTKFIGVCVLAFAQSKIFDVF 1129
Query: 1221 YFQMYLALVLL 1231
YF+M+ L+++
Sbjct: 1130 YFRMWFTLIIV 1140
>sp|Q19127|NPC1_CAEEL Niemann-Pick C1 protein homolog 1 OS=Caenorhabditis elegans GN=ncr-1
PE=1 SV=2
Length = 1383
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 325/1318 (24%), Positives = 572/1318 (43%), Gaps = 165/1318 (12%)
Query: 47 KHVEEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSS-----KVQSLCPTI-TGN--V 98
H + C M +C ++ C N +V+P + K+ CP + TG+ +
Sbjct: 16 HHGDAGCIMRGLCQKHTENAYGPCVTNDTNVEPTAFDKTHPAYEKMVEFCPHLLTGDNKL 75
Query: 99 CCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNN- 157
CCT Q + L Q+ QA L CP+C NF L+CE TCSPNQ F++++ + +
Sbjct: 76 CCTPSQAEGLTKQIAQARHILGRCPSCFDNFAKLWCEFTCSPNQQDFVSISEMKPIEKKE 135
Query: 158 ----------LTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGGAQ-NFKDWF 206
V+ ++Y ++ F +G++ SCKDV FG AL + +W
Sbjct: 136 GFTPEYQPAEAYVNTVEYRLSTDFAEGMFSSCKDVTFG--GQPALRVMCTSTPCTLTNWL 193
Query: 207 AFIG-RRAAANLPGSPYTIKFWP-SAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTS 260
FIG + N+P + + P P MNV+ C G CS +C
Sbjct: 194 EFIGTQNLDLNIPIHTKFLLYDPIKTPPSDRSTYMNVNFTGCDKSARVGWPACSTSECNK 253
Query: 261 SPVCSSTAPPPHKSS--SCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSR 318
+ K+S +C+V C++ + + +I +++ GF +
Sbjct: 254 EEYANLIDLDDGKTSGQTCNVH----GIACLNIFVMLAFIGSLAVLLCVGFVFTSYDE-- 307
Query: 319 SFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQLS--IVQGYMSNFYRK 376
D + L + +E +P+ RNRI+ + + +M N R
Sbjct: 308 -----------DYTNLRQTQSGEE-----------SPK-RNRIKRTGAWIHNFMENNARD 344
Query: 377 YGKWVARNPTLVLSLSMALVLLLCL-GLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLA 435
G RNP + A VL+ CL G+I + T +W P SRA +E++ F+++
Sbjct: 345 IGMMAGRNPKSHFFIGCA-VLIFCLPGMIYHKESTNVVDMWSSPRSRARQEEMVFNANFG 403
Query: 436 PFYRIEELILATIPD-TTHGNLPSIVTESNI-KLLFEIQKKIDGLRANYS-GSMISLTDI 492
R ++++L + D + G L V +I + LF+I I + S G I+L D+
Sbjct: 404 RPQRYQQIMLLSHRDFQSSGKLYGPVFHKDIFEELFDILNAIKNISTQDSDGRTITLDDV 463
Query: 493 CMKPL--GQDCATQSVLQYFK-----------------MDPKNFDDFGG-------VEHV 526
C +P+ G DC S YF+ D FD F + H+
Sbjct: 464 CYRPMGPGYDCLIMSPTNYFQGNKEHLDMKSNKEETVSEDDDAFDYFSSEATTDEWMNHM 523
Query: 527 KYCF-----QHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREG 581
C Q S SCM + GP P+ G + N+ A++ ++T V R
Sbjct: 524 AACIDQPMSQKTKSGLSCMGTYGGPSAPNMVFGK-NSTNHQAANSIMMTILVTQ---RTE 579
Query: 582 NETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL 641
E +KA WEK F++ K+ +S + +F +E SI +E++ ++ + +T+VI+
Sbjct: 580 PEIQKAELWEKEFLKFCKEY---REKSPKVIFSFMAERSITDEIENDAKDEIVTVVIALA 636
Query: 642 VMFAYISLTLGD----TPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697
+ Y++ +LG L S + S++ LG+ V++ +LS S G FS G+
Sbjct: 637 FLIGYVTFSLGRYFVCENQLWSILVHSRICLGMLSVIINLLSSFCSWGIFSMFGIHPVKN 696
Query: 698 IMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETR------ISNALVEVGPSITLASLS 751
+ V F+V +GV ++V +Q++ +P + + + P++ +SL
Sbjct: 697 ALVVQFFVVTLLGVCRTFMVVKYYAQQRVSMPYMSPDQCPEIVGMVMAGTMPAMFSSSLG 756
Query: 752 EVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKR------- 804
+F +G F +PA R F ++A LAVL+D +L T F+AL V+D R + +
Sbjct: 757 CAFSFFIGGFTDLPAIRTFCLYAGLAVLIDVVLHCTIFLALFVWDTQRELNGKPEFFFPY 816
Query: 805 --VDCIPCLKLSSSYADSDKGIG-----QRKPGLLARYMK---------------ALCTR 842
D + + A +D + Q P L+ R + L ++
Sbjct: 817 QIKDLLGAYLIGRQRA-TDTFMTQFFHFQVAPFLMHRMTRIITGIIFIASFITTVILSSK 875
Query: 843 IEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCD 902
I G +Q + SY+ +F + + +GPP++F V N+ C+ C
Sbjct: 876 ISVGFDQSMAFTEKSYISTHFRYLDKFFDVGPPVFFTVDGELDWHRPDVQNKFCTFPGCS 935
Query: 903 SNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPC 962
S N ++ A + +Y++ +W+D++L WIS ++ CC+ + + D C
Sbjct: 936 DTSFGNIMNYAVGHTEQTYLSGEMYNWIDNYLEWISRKS-PCCKVYVH------DPNTFC 988
Query: 963 CPSGQSSCGSAGVCKDC------TTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAK 1016
+ S C+ C + S ++ RPS F L FL P++ C
Sbjct: 989 STNRNKSALDDKACRTCMDFDYVANSYPKSSIMYHRPSIEVFYRHLRHFLEDTPNSECVF 1048
Query: 1017 GGHGAYTNSVDLKGYENGIVQASSFRTYHTPL--NRQIDYVNSMRAAREFSSRVSDSLQ- 1073
GG ++ +++ G +QAS F T+H L + D++ +M AR S R+ S+
Sbjct: 1049 GGRASFKDAISFTS--RGRIQASQFMTFHKKLSISNSSDFIKAMDTARMVSRRLERSIDD 1106
Query: 1074 -MEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVF-VVCLITTCSFWSSAIILLVLTMI 1131
+F YS + ++EQY I L I + VF ++C+ +A ++
Sbjct: 1107 TAHVFAYSKIFPFYEQYSTIMPILTTQLFITVVGVFGIICVTLGIDVKGAACAVICQVSN 1166
Query: 1132 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDK-NQRMKEALGTM 1190
++ M I I +NA+S NLVM+ GI +EF V++ ++ S + R + +G++
Sbjct: 1167 YFHIVAFMYIFNIPVNALSATNLVMSSGILIEFSVNVLKGYACSLRQRAKDRAESTVGSI 1226
Query: 1191 GASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248
G + SG +T + L + ++ VY+F+++L ++ +H L+ LP++L+ G
Sbjct: 1227 GPIILSGPVVTMAGSTMFLSGAHLQIITVYFFKLFLITIVSSAVHALIILPILLAFGG 1284
>sp|P34389|NPC2_CAEEL Niemann-Pick C1 protein homolog 2 OS=Caenorhabditis elegans GN=ncr-2
PE=3 SV=2
Length = 1274
Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 317/1233 (25%), Positives = 532/1233 (43%), Gaps = 159/1233 (12%)
Query: 96 GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS 155
VCCTE Q + ++ A L CP+C NF L+C+ TCSP+QS F+ V +
Sbjct: 83 AQVCCTELQLKGMTDRISNAATILGSCPSCFDNFAKLWCQFTCSPDQSKFMKVMETTGPK 142
Query: 156 NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG-GGAQNFKDWFAFIGRRAA 214
N V +++ + F +GLYESC+ F N AL + GG +F++++ F+G +
Sbjct: 143 N--VVVKMEFKVNRDFVEGLYESCRHTWFA--NGLALRLMSLGGKVSFENFYGFMGTK-- 196
Query: 215 ANLPGS-PYTIKFWPSAPELSGMIPMNVSAYSCADGSLGCSCGDCTSSPVCSSTAPPPHK 273
NL S P +F S + + IP S C DC P + K
Sbjct: 197 -NLAQSIPINTEFQFSRMKNAMNIPTTPCHKSAGPKVPACGAIDC---PTNAHQLVDISK 252
Query: 274 SSSCSVKMGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSE 333
K+ + ++ L I + +++ + + RS A +G +
Sbjct: 253 VEHLGTKVFHPHFPDFEWLLKICGCLALTVLLVFILKYSCHRRS----------APNGED 302
Query: 334 LHSVERQKEENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSM 393
V+ K NL +Q + L +Y V ++P + +SL +
Sbjct: 303 GCYVDLGKG-NLEVQFEGLCA---------------------RYANAVIKHPLIFVSLGL 340
Query: 394 ALVLLLCLGLIRFEVETRP-EKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTT 452
+ C G +F T +++ G EK F S P +RIE+ I +P TT
Sbjct: 341 IVAAACCSGNFKFHSLTHSVDQVSAADGETRRNEKKFIHS-FGPNHRIEQ-IFINLPPTT 398
Query: 453 HG--NLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQD--CATQSVLQ 508
N+P + +F++ I L A Y S + L DIC KP+G++ CA S
Sbjct: 399 KSMFNMPLF------EEMFQLVGNIQNLTACYGNSSVKLDDICYKPIGKNHGCAIMSPTN 452
Query: 509 YFKMDPKNFDDFG------------GVEHVKYCFQH-----YTSTESCMSAFKGPLDPST 551
YF+ NF++ G EH+KYC ++ S SC F GP+DP
Sbjct: 453 YFQNKWTNFENAGPPTIDDEIFDDQHWEHLKYCIRNPLTVSTYSEMSCFGEFSGPIDPIL 512
Query: 552 ALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 611
GG S + A + + V G E +A+AWE AF+ + + + K+
Sbjct: 513 VFGG-SNESIKGAEMYYTARTIMITVLIRGPE-DQAIAWETAFLNM-----MSRYEMKHA 565
Query: 612 TLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLG--DTPHLS--SFYISSKVL 667
F +E+S+ EE+ D I VI+ + ++ LG P S S + K+L
Sbjct: 566 NFTFMTETSVAEEIHTAVETDKIVSVIACAAVLIWVITMLGINHWPESSILSALVHHKLL 625
Query: 668 LGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-- 725
+ +S V++ ++SV S+G FS GV +T + V+ F++ +G++ + +++ +
Sbjct: 626 ISISAVMISVISVWCSIGMFSLFGVHATDNAIVVLFFVITCLGINRIFVIIRTFQANGHC 685
Query: 726 LELP------LETRISNALVEVGPSITLASL-SEVLAFAVGSFIP-----MPACRVFSMF 773
LP + RISN + P + SL F G +P MPA VF+
Sbjct: 686 YGLPNISYREMNHRISNVMRRSIPIVLTNSLICSTCLFLAGGVLPYVSVSMPAVEVFARH 745
Query: 774 AALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSY----------ADSDKG 823
A LA+L+D + + L +D R + + P +LS+ +
Sbjct: 746 AGLAILMDTAFYLLVMLPLFQYDARREMSGKCEIWPWYELSNESKINLCMEAVDGNLRSP 805
Query: 824 IGQRKPGLLARYMKALCTR-------------------IEPGLEQKIVLPRDSYLQGYFN 864
+ K + +K +C +E G Q + SYL +F
Sbjct: 806 VDWFKLAIAPLLLKKICRIWIATFFFVSLIIACYCTLCLEFGFNQVMAFSETSYLTKHFQ 865
Query: 865 NISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIP--QSSYI 922
N++E+L IGPPL+FVV+ + + N+ C+++ CD NS+ N+I + + +Y+
Sbjct: 866 NMNENLNIGPPLWFVVEGDVKWHDPKMQNKFCTLAGCDDNSMGNKIRSLAYAENYKGNYL 925
Query: 923 AKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTC 982
WLD +L ++ P G C K +C P + + S S+ TT
Sbjct: 926 HGDVNIWLDSYLQFMHPR--GSCCKMDGKQFCDPSN------ATHCSSCSSSSVASLTT- 976
Query: 983 FHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFR 1042
+ +F L FL PS CA GG +++L NG +Q++ F
Sbjct: 977 -----------TEYEFYRNLHHFLETPPSIQCAHGGMALAKPAINLT--RNGKIQSAYFS 1023
Query: 1043 TYHTPLN--RQIDYVNSMRAAREFSSRVSDSLQM---EIFPYSVFYMYFEQYLDI-WRTA 1096
T+ LN I ++ R A+ + + L++ +++ YS F+ Y+EQYL +
Sbjct: 1024 TFFKKLNLSDSIQLYDAWRFAKYLADDIERELEIPGVKVYVYSTFFPYYEQYLTLSTTVY 1083
Query: 1097 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 1156
+ + + A + L + S + + VL + LM M +L I +N VSV+N+ M
Sbjct: 1084 TLVVLVLFVAFVTISLFLRVNLAGSLVTVFVLLSSYLHLMEWMYLLGITVNVVSVINMAM 1143
Query: 1157 AVGIAVEFCVHITHAFSVSSGDK-NQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
++GIAVEF + H F S K +R AL + G++ SGI ++ L F+ +
Sbjct: 1144 SLGIAVEFFGQMLHGFYNSKKPKREERAFAALVSNGSTTLSGIFPAIMITAGCLSFADSR 1203
Query: 1216 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248
V + Y+ + + L+ +HG+V++P +L++FG
Sbjct: 1204 VLITYFCNQLVGIGLVCAVHGVVYMPTLLAIFG 1236
>sp|Q61115|PTC1_MOUSE Protein patched homolog 1 OS=Mus musculus GN=Ptch1 PE=2 SV=1
Length = 1434
Score = 130 bits (328), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE + A AW++ +V++ + P S L F++ +++++ LK S I +
Sbjct: 374 NEDRAAAILEAWQRTYVEVVHQSVAP--NSTQKVLPFTT-TTLDDILKSFSDVSVIRVAS 430
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 431 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 485
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 486 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 545
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 546 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 600
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/214 (35%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 1036 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 1095
++ + F Y L D+V ++ R + + SL + +P ++++EQY+ +
Sbjct: 955 IEYAQFPFYLNGLRDTSDFVEAIEKVRVICNNYT-SLGLSSYPNGYPFLFWEQYISLRHW 1013
Query: 1096 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1155
L+++++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1014 LLLSISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1073
Query: 1156 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
+VGI VEF VH+ AF + GDKN R AL M A V G ++ L+GV++L S +
Sbjct: 1074 ASVGIGVEFTVHVALAFLTAIGDKNHRAMLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1132
Query: 1216 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1133 FIVRYFFAVLAILTVLGVLNGLVLLPVLLSFFGP 1166
>sp|Q13635|PTC1_HUMAN Protein patched homolog 1 OS=Homo sapiens GN=PTCH1 PE=1 SV=2
Length = 1447
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRTYVEVVHQSV--AQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCSKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 128/214 (59%), Gaps = 2/214 (0%)
Query: 1036 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 1095
++ + F Y L D+V ++ R S + SL + +P ++++EQY+ +
Sbjct: 969 IEYAQFPFYLNGLRDTSDFVEAIEKVRTICSNYT-SLGLSSYPNGYPFLFWEQYIGLRHW 1027
Query: 1096 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1155
L+ +++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1028 LLLFISVVLACTFLVCAVFLLNPWTAGIIVMVLALMTVELFGMMGLIGIKLSAVPVVILI 1087
Query: 1156 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
+VGI VEF VH+ AF + GDKN+R AL M A V G ++ L+GV++L S +
Sbjct: 1088 ASVGIGVEFTVHVALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1146
Query: 1216 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1147 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1180
>sp|Q90693|PTC1_CHICK Protein patched homolog 1 OS=Gallus gallus GN=PTCH1 PE=1 SV=1
Length = 1442
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 13/235 (5%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + S L+F++ +++++ LK S I +
Sbjct: 388 NEDKAAAILEAWQRMYVEVVHQSV--AQNSTQKVLSFTT-TTLDDILKSFSDVSVIRVAS 444
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 445 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGISFNAAT 499
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKR--QQLELPLETRISNALVEVGPSITLASLSEVLAF 756
+V+PFL L VGVD++ +L HA Q +P E R L G S+ L S+S V AF
Sbjct: 500 TQVLPFLALGVGVDDVFLLAHAFSETGQNKRIPFEDRTGECLKRTGASVALTSISNVTAF 559
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
+ + IP+PA R FS+ AA+ V+ +F + + F A++ D R ED+R+D C
Sbjct: 560 FMAALIPIPALRAFSLQAAVVVVFNFAMVLLIFPAILSMDLYRREDRRLDIFCCF 614
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 129/214 (60%), Gaps = 2/214 (0%)
Query: 1036 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT 1095
++ + F Y L D+V ++ R + + SL + +P ++++EQY+ +
Sbjct: 968 IEYAQFPFYLNGLRETSDFVEAIEKVRAICNNYT-SLGIASYPNGYPFLFWEQYIGLRHW 1026
Query: 1096 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1155
L+++++ + F+VC + + W++ II++VL ++ V+L G+M ++ I+L+AV VV L+
Sbjct: 1027 LLLSISVVLACTFLVCALFLLNPWTAGIIVVVLALMTVELFGMMGLIGIKLSAVPVVILI 1086
Query: 1156 MAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
+VGI VEF VHI AF + GDKN+R AL M A V G ++ L+GV++L S +
Sbjct: 1087 ASVGIGVEFTVHIALAFLTAIGDKNRRAVLALEHMFAPVLDG-AVSTLLGVLMLAGSEFD 1145
Query: 1216 VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
V Y+F + L +LG L+GLV LPV+LS FGP
Sbjct: 1146 FIVRYFFAVLAILTILGVLNGLVLLPVLLSFFGP 1179
>sp|Q09614|PTC1_CAEEL Protein patched homolog 1 OS=Caenorhabditis elegans GN=ptc-1 PE=1
SV=2
Length = 1408
Score = 120 bits (302), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 121/208 (58%), Gaps = 6/208 (2%)
Query: 1044 YHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIA 1103
Y T L V++++ R R +D + FP + + ++EQYL + T + AI+
Sbjct: 1132 YLTGLTDTAVIVDAIKDIRSVCERFTDQ-GLPNFPQGIAFTFWEQYL--FLTGNLMQAIS 1188
Query: 1104 IGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIA 1161
I + V C+I+ F W++ +++ +L ++ +L G M ++ I+LN VS V L+ AVGI
Sbjct: 1189 IITISVFCVISVLLFNPWAALMVVCILGIMTCELAGFMGLVGIKLNPVSAVTLITAVGIG 1248
Query: 1162 VEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYY 1221
VEF VH+ +F + G ++QR A+ + V G + + L+G+++L FS E V Y+
Sbjct: 1249 VEFTVHVVVSFLTALGTRSQRTSSAVDRVFVPVIHG-SFSTLLGILMLGFSEFEFVVKYF 1307
Query: 1222 FQMYLALVLLGFLHGLVFLPVVLSVFGP 1249
F + AL+ +G ++GL+ LPV+LS FGP
Sbjct: 1308 FIVMTALICIGIINGLILLPVLLSWFGP 1335
Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 111/225 (49%), Gaps = 3/225 (1%)
Query: 589 AWEKAFVQLAKDELLPMVQSKN--LTLAFSSESSIEEELKRESTADAITIVISYLVMFAY 646
AW++ F + + + + N TL + +SI + L+ + I+ Y +M AY
Sbjct: 609 AWQRNFTKSLYNHKANVDEDGNERRTLHPLASTSIADMLEEFCQFNYTIILAGYALMLAY 668
Query: 647 ISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLV 706
+T + S + L L+GV++V + + +G + G++ +++PFL
Sbjct: 669 AIVTQARFDNCLP-ATESSMGLALAGVLVVTFASVAGLGLATWFGIEFNAATTQIVPFLT 727
Query: 707 LAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766
L +GVDNM +L+H + ++ + E G SI S++ +L+F G+ +P+PA
Sbjct: 728 LGIGVDNMFMLLHNYRDVVKLAGGHAEMAILMRETGMSILCTSINNILSFLTGTLLPIPA 787
Query: 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCL 811
R F +++ + +F+ +T + A+I D R + +R D + CL
Sbjct: 788 LRSFCAQSSILLTFNFIAILTIYPAIISIDLRRKKAQRRDLVCCL 832
>sp|O35595|PTC2_MOUSE Protein patched homolog 2 OS=Mus musculus GN=Ptch2 PE=2 SV=2
Length = 1182
Score = 120 bits (300), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 8/222 (3%)
Query: 589 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 648
AW++ FVQLA+ E LP S+ + AFSS +++++ L+ S +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPANASQQIH-AFSS-TTLDDILRAFSEVSTTRVVGGYLLMLAYAC 410
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGAVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+GVD++ +L HA + + PL R+ L G S+ L S++ ++AF + + +P+PA R
Sbjct: 466 IGVDDIFLLAHAFTKAPPDTPLPERMGECLRSTGTSVALTSVNNMVAFFMAALVPIPALR 525
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 810
FS+ AA+ V +F + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCNFAAVMLVFPAILSLDLRRRHRQRLDVLCC 567
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 125/215 (58%), Gaps = 2/215 (0%)
Query: 1048 LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAV 1107
L + D+V ++ AR + + + +P ++++EQYL + R L+ + I +
Sbjct: 917 LQKTADFVEAIEGARAACTEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 1108 FVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVH 1167
F+VC + S W++ +I+LVL M+ V+L G+M L I+L+A+ VV LV ++GI VEF VH
Sbjct: 976 FLVCALLLLSPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASIGIGVEFTVH 1035
Query: 1168 ITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 1227
+ F S G +N R AL A V G ++ L+G+++L S + + Y+F +
Sbjct: 1036 VALGFLTSHGSRNLRAASALEQTFAPVTDG-AVSTLLGLLMLAGSNFDFIIRYFFVVLTV 1094
Query: 1228 LVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEER 1262
L LLG LHGL+ LPV+LS+ GPP + + V ++ +
Sbjct: 1095 LTLLGLLHGLLLLPVLLSILGPPPQVVQVYKESPQ 1129
>sp|Q9Y6C5|PTC2_HUMAN Protein patched homolog 2 OS=Homo sapiens GN=PTCH2 PE=2 SV=2
Length = 1203
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 123/222 (55%), Gaps = 8/222 (3%)
Query: 589 AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYIS 648
AW++ FVQLA+ E LP S+ + AFSS +++++ L S A +V YL+M AY
Sbjct: 354 AWQRRFVQLAQ-EALPENASQQIH-AFSS-TTLDDILHAFSEVSAARVVGGYLLMLAYAC 410
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+T+ L S+ +GL+GV+LV L+V +G + +G+ +V+PFL L
Sbjct: 411 VTM-----LRWDCAQSQGSVGLAGVLLVALAVASGLGLCALLGITFNAATTQVLPFLALG 465
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+GVD++ +L HA PL+ R+ L G S+ L S++ + AF + + +P+PA R
Sbjct: 466 IGVDDVFLLAHAFTEALPGTPLQERMGECLQRTGTSVVLTSINNMAAFLMAALVPIPALR 525
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPC 810
FS+ AA+ V F+ + F A++ D R +R+D + C
Sbjct: 526 AFSLQAAIVVGCTFVAVMLVFPAILSLDLRRRHCQRLDVLCC 567
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 126/220 (57%), Gaps = 4/220 (1%)
Query: 1048 LNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAV 1107
L + D+V ++ AR + + + +P ++++EQYL + R L+ + I +
Sbjct: 917 LQKTADFVEAIEGARAACAEAGQA-GVHAYPSGSPFLFWEQYLGLRRCFLLAVCILLVCT 975
Query: 1108 FVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVH 1167
F+VC + + W++ +I+LVL M+ V+L G+M L I+L+A+ VV LV +VGI VEF VH
Sbjct: 976 FLVCALLLLNPWTAGLIVLVLAMMTVELFGIMGFLGIKLSAIPVVILVASVGIGVEFTVH 1035
Query: 1168 ITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA 1227
+ F + G +N R AL A V G ++ L+G+++L S + V Y+F
Sbjct: 1036 VALGFLTTQGSRNLRAAHALEHTFAPVTDG-AISTLLGLLMLAGSHFDFIVRYFFAALTV 1094
Query: 1228 LVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSVSS 1267
L LLG LHGLV LPV+LS+ GPP +++ +E P + S
Sbjct: 1095 LTLLGLLHGLVLLPVLLSILGPPPE--VIQMYKESPEILS 1132
>sp|Q98864|PTC1_DANRE Protein patched homolog 1 OS=Danio rerio GN=ptch1 PE=2 SV=1
Length = 1220
Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/224 (34%), Positives = 130/224 (58%), Gaps = 15/224 (6%)
Query: 1031 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYL 1090
Y NG+ QAS F I+ + S+R E R ++ +P ++++EQY+
Sbjct: 966 YLNGLRQASDF----------IEAIESVRTICEEFMRQG----IKNYPNGYPFLFWEQYI 1011
Query: 1091 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVS 1150
+ L+++++ + F+VC I + W++ +I+ +L M+ V+L G+M ++ I+L+A+
Sbjct: 1012 GLRHWFLLSISVVLACTFLVCAILLLNPWTAGVIVFILPMMTVELFGIMGLIGIKLSAIP 1071
Query: 1151 VVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1210
VV L+ +VGI VEF VHI F + GD+N R A+ M A V G ++ L+GV++L
Sbjct: 1072 VVILIASVGIGVEFTVHIALGFLTAIGDRNTRSAVAMEHMFAPVIDG-AISTLLGVLMLA 1130
Query: 1211 FSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1254
S + + Y+F + L LLG L+GLV LPV+LS+ GPP+ +
Sbjct: 1131 GSEFDFIMRYFFAVLAILTLLGILNGLVLLPVLLSLMGPPAEVV 1174
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 131/245 (53%), Gaps = 8/245 (3%)
Query: 567 FVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELK 626
F Y +++ E T +W++ FV++ + P S N+ AFS+ +++ + +K
Sbjct: 359 FKDDYEIHDINWNEDKATAILESWQRKFVEVVHGSI-PQNSSSNV-YAFST-TTLNDIMK 415
Query: 627 RESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686
S I + YL+M AY +T+ L S+ +GL+GV+LV LSV +G
Sbjct: 416 SFSDVSVIRVAGGYLLMLAYACVTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGL 470
Query: 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746
S +G+ +V+P L L +GVD+M +L H+ + +P + R + L G S+
Sbjct: 471 CSLLGLSFNAATTQVLPSLALGIGVDDMFLLGHSFTETRSNIPFKERTGDCLRRTGTSVA 530
Query: 747 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVD 806
L S++ ++AF + + +P+PA R FS+ AA+ V+ +F + + F A++ D R EDKR+D
Sbjct: 531 LTSVNNMIAFFMAALVPIPALRAFSLQAAVVVVFNFAMALLIFPAILSLDLHRREDKRLD 590
Query: 807 CIPCL 811
+ C
Sbjct: 591 ILCCF 595
>sp|Q0EEE2|PTHD3_MOUSE Patched domain-containing protein 3 OS=Mus musculus GN=Ptchd3 PE=1
SV=1
Length = 906
Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 105/185 (56%), Gaps = 11/185 (5%)
Query: 1068 VSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLIT----TCSFWSSAI 1123
++++ ++ + Y+ ++YF+QY I + N+ IA A+F+V L+ CS W
Sbjct: 728 IAENCEVPLMVYNQAFIYFDQYAAIIENTVRNVMIASTAMFIVSLLLIPHPVCSLW---- 783
Query: 1124 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF-SVSSGDKNQR 1182
+ + ++V + G MA + L+++S++NLV+ +G + +F HI++AF S + N++
Sbjct: 784 VTFAIASVIVGVTGFMAFWNVNLDSISMINLVICIGFSFDFSAHISYAFVSSTEPSVNKK 843
Query: 1183 MKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 1242
EAL +G V ++ ++GV VL ++ +F ++ M+L + G HGL+F+PV
Sbjct: 844 SIEALYLLGYPVLQS-AISTIIGVCVLSAAKAYIFRTFFKIMFLVM-FFGAAHGLIFIPV 901
Query: 1243 VLSVF 1247
L+ F
Sbjct: 902 FLTFF 906
Score = 87.8 bits (216), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 141/628 (22%), Positives = 258/628 (41%), Gaps = 97/628 (15%)
Query: 343 ENLPMQVQMLGTPRTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLG 402
E LP Q PR R + ++ +S ++++G V NP L L L L G
Sbjct: 56 ERLPPLGQEAPPPR---RCHTNCLEAPLSRGFQRFGATVGANPWLFLLGPALLTASLGTG 112
Query: 403 LIRFEVETRP-EKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSI-- 459
LI E E+ + GS A E+ F H F + + ++ N SI
Sbjct: 113 LIFLPKEKENLEEQYTPIGSPAKAERRFVQGH---FSTNDTYRFSASRTSSETNFASILV 169
Query: 460 VTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKM--DPKNF 517
V+ +N L EI K++ L + ++ G Q V +K P N
Sbjct: 170 VSLANSLLEPEIFKEVSKLDQAVQALKV------VQENGTQILYQEVCAKYKTLCVPPN- 222
Query: 518 DDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTA--LGGFSGNN-----------YSEA 564
+ + +QH +S F P+ L GF G N E+
Sbjct: 223 -------PLLFSWQHNSSLNLSDLTFPIHNTPTQLIYLAGFFGGNVLGQMTGKSQRLVES 275
Query: 565 SAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEE 624
A + Y + + +++++ AW F+ D + + + FSS + +
Sbjct: 276 RAMRLLYYLKT---EDPEDSERSQAWLTHFLDHFNDMKSSLTLEEIEVVYFSS---LSRQ 329
Query: 625 LKRESTADAITIV--ISYL--VMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSV 680
L+ E+T+ + + ++Y+ ++FA +S + D I +K+ + + GV V +SV
Sbjct: 330 LEFEATSKTVIPLFHLAYILIILFAVVSCSRLDC-------IRNKMCVAVFGVFSVAMSV 382
Query: 681 LGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 740
+ G +GV +I+ PFL+L VGVD+M I++ A ++ L + R+SN+ +
Sbjct: 383 VSGFGLMLHLGVPFVIIVANS-PFLILGVGVDDMFIMISAWQKTSLSESIRERLSNSYSK 441
Query: 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFD---- 796
V SIT+ +++ VLAF G + + F ++ +L + IT F A++ D
Sbjct: 442 VAVSITITTITNVLAFYTGITSSFRSVQYFCIYTGTTLLFCYFYSITCFGAVMALDGKRE 501
Query: 797 -----FLRAEDKRVD------CIPCLKLSSSYADSDKGI--------GQRKPGLLARYMK 837
+L D++ C+P L + + + + G A+++
Sbjct: 502 VAWSRWLEKPDQKYSSLKKSCCVPFGSLIDKHGEDNHPMNLFFRDYFGPFLTTSKAKFIV 561
Query: 838 AL------------CTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVK--- 881
L C +++ GL+ + + DSY+ YFN ++ GP + +V
Sbjct: 562 VLLYIFYIISSIYGCFQVQEGLDLRNLASDDSYITPYFNVEEDYFSDYGPRVMVIVTESV 621
Query: 882 NYNYSSESRQTNQLCSISQCDSNSLLNE 909
NY + ++ RQ C ++Q + N +++
Sbjct: 622 NY-WDNDVRQKLDKC-MTQFEENEYVDK 647
>sp|Q12770|SCAP_HUMAN Sterol regulatory element-binding protein cleavage-activating
protein OS=Homo sapiens GN=SCAP PE=1 SV=4
Length = 1279
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/300 (28%), Positives = 141/300 (47%), Gaps = 36/300 (12%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGVAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 824
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL S K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACLP-------SAKPV 468
Query: 825 GQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNN--ISEHLRIGPPLYFVVKN 882
GQ RY + L R P I L S F N + + LR+ +YF+ +
Sbjct: 469 GQP-----TRYERQLAVR--PSTPHTITLQPSS-----FRNLRLPKRLRV---VYFLART 513
>sp|P97260|SCAP_CRIGR Sterol regulatory element-binding protein cleavage-activating
protein OS=Cricetulus griseus GN=SCAP PE=1 SV=1
Length = 1276
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 143/300 (47%), Gaps = 36/300 (12%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 824
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL S K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMFFFTTVLSIDIRRMELADLNKRLPPESCLP-------SAKPV 468
Query: 825 GQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNN--ISEHLRIGPPLYFVVKN 882
G+ ARY + L R P + I L S F N + + LR+ +YF+ +
Sbjct: 469 GRP-----ARYERQLAVR--PAMPHTITLQPSS-----FRNLRLPKRLRV---IYFLART 513
>sp|A2RRU4|SCAP_RAT Sterol regulatory element-binding protein cleavage-activating
protein OS=Rattus norvegicus GN=Scap PE=2 SV=1
Length = 1276
Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/300 (27%), Positives = 142/300 (47%), Gaps = 36/300 (12%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNVATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 824
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL S K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLP-------SAKPV 468
Query: 825 GQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNN--ISEHLRIGPPLYFVVKN 882
G+ ARY + L R P I L S F N + + LR+ +YF+ +
Sbjct: 469 GRP-----ARYERQLAVR--PSTPHTITLQPSS-----FRNLRLPKRLRV---IYFLART 513
>sp|Q6GQT6|SCAP_MOUSE Sterol regulatory element-binding protein cleavage-activating
protein OS=Mus musculus GN=Scap PE=1 SV=1
Length = 1276
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 118/231 (51%), Gaps = 15/231 (6%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +E+ + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLSSLRARLMLLHPSPNCSL--RAENLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI + +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNAATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRV---DCIPCLK 812
F +FA + ++ DF LQ+ F ++ D R E +KR+ C+P K
Sbjct: 416 EFCLFAVVGLVSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPESCLPSAK 466
>sp|Q5MNU5|SCAP_PIG Sterol regulatory element-binding protein cleavage-activating
protein OS=Sus scrofa GN=SCAP PE=2 SV=2
Length = 1279
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 142/300 (47%), Gaps = 36/300 (12%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYIS 648
+ F+ + L+ + S N +L +ES + K E A+ I +V +Y+++FAYI
Sbjct: 243 YHAKFLGSLRARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIY 300
Query: 649 LTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLA 708
+ + SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+
Sbjct: 301 FSTRKID-----MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVV 355
Query: 709 VGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACR 768
+G++N+ +L +V ++L ++ RI+ L SI +E+ +G F +PA +
Sbjct: 356 IGLENVLVLTKSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIILIGYFTLVPAIQ 415
Query: 769 VFSMFAALAVLLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCLKLSSSYADSDKGI 824
F +FA + ++ DF LQ+ F ++ D R E +KR+ CL + K +
Sbjct: 416 EFCLFAVVGLVSDFFLQMPFFTTVLSIDIRRMELADLNKRLPPEACLPPA-------KPV 468
Query: 825 GQRKPGLLARYMKALCTRIEPGLEQKIVLPRDSYLQGYFNN--ISEHLRIGPPLYFVVKN 882
G+ AR+ + L R P I L S F N + + LR+ +YF+ +
Sbjct: 469 GRS-----ARFERQLAVR--PATPHTITLQPSS-----FRNLRLPKRLRV---IYFLART 513
>sp|B9EKX1|PTHD4_MOUSE Patched domain-containing protein 4 OS=Mus musculus GN=Ptchd4 PE=2
SV=2
Length = 904
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 193/942 (20%), Positives = 385/942 (40%), Gaps = 137/942 (14%)
Query: 360 RIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCL-GLIRFEVETRPEKLWVG 418
R+ +++ + +F + G V+R+P L++ L + L L RF+ E E+L V
Sbjct: 17 RMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTEGDLERL-VA 75
Query: 419 PGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTES----NIKL----LFE 470
P A+ + S L P + + + + + T G ++ S NI L + +
Sbjct: 76 PSHSLAKIERSLASSLFPLDQSKSQLYSDL--HTPGRYGRVILLSSPGDNILLQAEGILQ 133
Query: 471 IQKKIDGLRANYSGSMISLTDIC-MKPLGQDCATQ---SVLQYFKMDPKNFDDFGGVEHV 526
+ + ++ N+ G + + +C ++ + C SVL+ + + V+ V
Sbjct: 134 THRAVMEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQ-V 192
Query: 527 KYCFQHYTSTESCMSAFKGPLDPSTALGGF------SGNNYSEASAFVVTYPVNNAVDRE 580
+Y T + ++F G LGG A A +TY +
Sbjct: 193 RYP---NTKLKDGRNSFIG-----HQLGGVVEVPNSKDQRVKSARAIQITYYLQTY---- 240
Query: 581 GNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
G+ T+ + WE F +L + + ++L L + S+ + + S +++
Sbjct: 241 GSATQDLIGEKWENEFCKLMRK---LQEEHQDLQLYSLASFSLWRDFHKTSILTRSKVLV 297
Query: 639 SYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696
S +++ A +S ++ D + SK LGL GV+ V +S+ + G F K
Sbjct: 298 SLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNS 350
Query: 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAF 756
++ IPF + G + L+ +R + LP + R+++A +V + T+ S + F
Sbjct: 351 TLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRVADAYSDVMVTYTMTSSLYFITF 409
Query: 757 AVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKL- 813
+G+ F + A ++F +++LL++ + F + +VF + E R I C K+
Sbjct: 410 GMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFAG-QLEQNRYHSIFCCKIP 468
Query: 814 SSSYADSDKGIGQRKPGLLARYM---KALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL 870
S+ Y D RKP M + E Q + +L+ ++N ++
Sbjct: 469 SAEYLD-------RKPVWFQTVMSDGHQQTSHHETNPYQHHFI--QHFLREHYNEWITNI 519
Query: 871 RIGP---PLYFVVKNYNY------SSESRQTNQLCSISQCDSNSLLNEISRASLIPQ-SS 920
+ P LY + ++++ S + N L S S S +++ + ++ P
Sbjct: 520 YVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPVIGF 579
Query: 921 YIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCT 980
Y+ +P W + + C FT S+
Sbjct: 580 YVYEPLEYWNSS----VQEDLQRLCSGFTAVSWVE------------------------- 610
Query: 981 TCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQA 1038
+ LK S I K F++ L S+ K + N + G EN I+ +
Sbjct: 611 ---QYYQFLKT--SNISANNKTD-FISVLQSSFLKKPEFQHFRNDIIFSRAGDENNIIAS 664
Query: 1039 SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIF-PYSVFYMYFEQYLDIWRTAL 1097
+ T ++Q + + + R S +S S++ +F P VF ++ +
Sbjct: 665 RLYLVARTSRDKQKEVIEVLDKLRPLS--LSKSIRFIVFNPSFVFTDHYS------LSVT 716
Query: 1098 INLAIAIGAVFVVCLIT-------TCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVS 1150
+ + IA V +V ++T +FW ++L +T I + ++G+M + + ++ +S
Sbjct: 717 VPVLIAGFGVLLVLILTFFLVIHPLGNFW----LILSVTSIELGVLGLMTLWNVDMDCIS 772
Query: 1151 VVNLVMAVGIAVEFCVHITHAFSVSSGD-KNQRMKEALGTMGASVFSGITLTKLVGVIVL 1209
++ L+ + A++ C + + F +++ + Q +K +L G ++ IT + L+G++ L
Sbjct: 773 ILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNIT-SFLIGLLPL 831
Query: 1210 CFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251
F + + F+ L LH V LPV L+ F PPS
Sbjct: 832 LFVPSNL-TFTLFKCLLLTGGCTLLHCFVILPVFLTFF-PPS 871
>sp|A6QM06|SCAP_BOVIN Sterol regulatory element-binding protein cleavage-activating
protein OS=Bos taurus GN=SCAP PE=2 SV=1
Length = 1278
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 97/397 (24%), Positives = 172/397 (43%), Gaps = 42/397 (10%)
Query: 435 APFYRIEELILATIPDTTHGNLPSI-VTESNIKLLFEIQKKIDGLRANYSGSMISLTDIC 493
AP I+++ + + H NL ++ V S + F++ ++I S SL D+C
Sbjct: 88 APVAYIQQIFVKSSVSPWHKNLLAVDVFRSPLSRAFQLVEEIRNHVLKDSSGTRSLEDVC 147
Query: 494 MKPLG--------------QDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESC 539
++ C S +++ D + F + ++ QH T
Sbjct: 148 LQVTDLLPGLRKLRNLLPEHGCLLLSPGNFWQNDRERF--HADPDIIRTIHQHEPKTLQT 205
Query: 540 MSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAK 599
+ K L G G YS S + V+ + T + F+ +
Sbjct: 206 SATLK------DLLFGVPGK-YSGVSLYTRKRLVSYTI------TLVFQHYHAKFLGSLR 252
Query: 600 DELLPMVQSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYISLTLGDTPHLS 658
L+ + S N +L +ES + K E A+ I +V +Y+++FAYI +
Sbjct: 253 ARLMLLHPSPNCSL--RAESLVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKID--- 307
Query: 659 SFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILV 718
+ SK L L+ VV V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L
Sbjct: 308 --MVKSKWGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLT 365
Query: 719 HAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+V ++L ++ RI+ L SI +E+ +G F +PA + F +FA + +
Sbjct: 366 KSVVSTPVDLEVKLRIAQGLSSESWSIMKNMATELGIVLIGYFTLVPAIQEFCLFAVVGL 425
Query: 779 LLDFLLQITAFVALIVFDFLRAE----DKRVDCIPCL 811
+ DF LQ+ F ++ D R E +KR+ CL
Sbjct: 426 VSDFFLQMLFFTTVLSIDIRRMELADLNKRLPPEACL 462
>sp|P18502|PTC_DROME Protein patched OS=Drosophila melanogaster GN=ptc PE=2 SV=2
Length = 1286
Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 40/308 (12%)
Query: 574 NNAVDREGNETKKAV----AWEKAFVQLAKDELLPMVQSK---NLTLAFSSESSIEEELK 626
N V G +KA AW++ F + + E L QS+ N + S +++++ L
Sbjct: 365 NYKVHHLGWTQEKAAEVLNAWQRNFSR--EVEQLLRKQSRIATNYDIYVFSSAALDDILA 422
Query: 627 RESTADAITIVI--SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 684
+ S A++IVI + V++A+ +L P + + +G++GV+L+ S +
Sbjct: 423 KFSHPSALSIVIGVAVTVLYAFCTLLRWRDP------VRGQSSVGVAGVLLMCFSTAAGL 476
Query: 685 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAV----KRQQLELPLETRISNALVE 740
G + +G+ +V+PFL L +GVD++ +L A +R+Q +L L+ +
Sbjct: 477 GLSALLGIVFNAASTQVVPFLALGLGVDHIFMLTAAYAESNRREQTKLILK--------K 528
Query: 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800
VGPSI ++ S +F +FIP+PA +VF + AA+ + + + F A+I D R
Sbjct: 529 VGPSILFSACSTAGSFFAAAFIPVPALKVFCLQAAIVMCSNLAAALLVFPAMISLDLRRR 588
Query: 801 EDKRVD----CIPCLKLSSSYA------DSDKGIGQRKPGLLARYMKALCTRIEPGLEQK 850
R D C P K A +++ G G R P L + P LEQ+
Sbjct: 589 TAGRADIFCCCFPVWKEQPKVAPPVLPLNNNNGRGARHPKSCNNNRVPLPAQ-NPLLEQR 647
Query: 851 IVLPRDSY 858
+P S+
Sbjct: 648 ADIPGSSH 655
Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 105/192 (54%), Gaps = 1/192 (0%)
Query: 1077 FPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLM 1136
+P + ++++EQY+ + + + LA + A V+ + S W++ +++L + + +
Sbjct: 937 YPSGIPFIFWEQYMTLRSSLAMILACVLLAALVLVSLLLLSVWAAVLVILSVLASLAQIF 996
Query: 1137 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFS 1196
G M +L I+L+A+ V L+++VG+ + F V I+ F S G++ +R++ ++ +
Sbjct: 997 GAMTLLGIKLSAIPAVILILSVGMMLCFNVLISLGFMTSVGNRQRRVQLSMQMSLGPLVH 1056
Query: 1197 GITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLV 1256
G+ LT V V +L S E + ++ + L ++ +G + L+ P++LS+ GP + + +
Sbjct: 1057 GM-LTSGVAVFMLSTSPFEFVIRHFCWLLLVVLCVGACNSLLVFPILLSMVGPEAELVPL 1115
Query: 1257 ERQEERPSVSSL 1268
E + + S L
Sbjct: 1116 EHPDRISTPSPL 1127
>sp|A0JPH4|SCAP_XENLA Sterol regulatory element-binding protein cleavage-activating
protein OS=Xenopus laevis GN=scap PE=2 SV=1
Length = 1311
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 13/221 (5%)
Query: 607 QSKNLTLAFSSESSIEEELKRE-STADAITIVISYLVMFAYISLTLGDTPHLSSFYISSK 665
Q + + +S+ + K E A+ I +V +Y+++FAYI + + SK
Sbjct: 256 QHPSTNSSAASQHIVHVHFKEEIGIAELIPLVTTYIILFAYIYFSTRKID-----LVKSK 310
Query: 666 VLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ 725
L L+ VV V+ S+L SVG + G+ TL E+ P+LV+ +G++N+ +L +V
Sbjct: 311 WGLALAAVVTVLSSLLMSVGLCTLFGLTPTLNGGEIFPYLVVVIGLENVLVLTKSVVSTP 370
Query: 726 LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 785
++L ++ RI+ L I +E+ +G F +PA + F +FA + ++ DF LQ
Sbjct: 371 VDLEVKLRIAQGLRNESWFIMKNMATELGIILIGYFTLVPAIQEFCLFAVVGLVSDFFLQ 430
Query: 786 ITAFVALIVFDFLRAE----DKRVD---CIPCLKLSSSYAD 819
+ F ++ D R E +KR+ CIP K + D
Sbjct: 431 MFFFTTVLSIDIRRMELADLNKRIPAEACIPPPKPGAKRYD 471
>sp|Q6ZW05|PTHD4_HUMAN Patched domain-containing protein 4 OS=Homo sapiens GN=PTCHD4 PE=2
SV=3
Length = 846
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 147/715 (20%), Positives = 294/715 (41%), Gaps = 98/715 (13%)
Query: 564 ASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621
A A +TY + G+ T+ + WE F +L + + + L L + S+
Sbjct: 170 ARAIQITYYLQTY----GSATQDLIGEKWENEFCKLIRKL---QEEHQELQLYSLASFSL 222
Query: 622 EEELKRESTADAITIVISYLVMF--AYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLS 679
+ + S +++S +++ A +S ++ D + SK LGL GV+ V +S
Sbjct: 223 WRDFHKTSILARSKVLVSLVLILTTATLSSSMKDC-------LRSKPFLGLLGVLTVCIS 275
Query: 680 VLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALV 739
++ + G F K ++ IPF + G + L+ +R + LP + RI++A
Sbjct: 276 IITAAGIFFITDGKYNSTLLG-IPFFAMGHGTKGVFELLSGWRRTKENLPFKDRIADAYS 334
Query: 740 EVGPSITLASLSEVLAFAVGS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDF 797
+V + T+ S + F +G+ F + A +VF +++LL++ + F + +VF
Sbjct: 335 DVMVTYTMTSSLYFITFGMGASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAG 394
Query: 798 LRAEDKRVDCIPCLKL-SSSYADSDKGIGQRKPGLLARYM---KALCTRIEPGLEQKIVL 853
+ E R I C K+ S+ Y D RKP M + E Q +
Sbjct: 395 -QLEQNRYHSIFCCKIPSAEYLD-------RKPVWFQTVMSDGHQQTSHHETNPYQHHFI 446
Query: 854 PRDSYLQGYFNNISEHLRIGP---PLYFVVKNYNY------SSESRQTNQLCSISQCDSN 904
+L+ ++N ++ + P LY + ++++ S + N L S S S
Sbjct: 447 --QHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGANIINLLASDSPSVSY 504
Query: 905 SLLNEISRASLIPQ-SSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCC 963
+++ + ++ P Y+ +P W + + C FT S+
Sbjct: 505 AMVQQKYFSNYSPVIGFYVYEPLEYWNSS----VQDDLRRLCSGFTAVSWVE-------- 552
Query: 964 PSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYT 1023
+ LK + K F++ L S+ K +
Sbjct: 553 --------------------QYYQFLKVSNVSANNKSD---FISVLQSSFLKKPEFQHFR 589
Query: 1024 NSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSV 1081
N + G E+ I+ + + T ++Q + + R S +S S++ +F S
Sbjct: 590 NDIIFSKAGDESNIIASRLYLVARTSRDKQKEITEVLEKLRPLS--LSKSIRFIVFNPSF 647
Query: 1082 FYMYFEQY-LDIWRTALI---NLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1137
+M + Y L + LI + + + F + + +FW ++L +T I + ++G
Sbjct: 648 VFM--DHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFW----LILSVTSIELGVLG 701
Query: 1138 VMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGD-KNQRMKEALGTMGASVFS 1196
+M + + ++ +S++ L+ + A++ C + F +++ + Q +K +L G ++
Sbjct: 702 LMTLWNVDMDCISILCLIYTLNFAIDHCAPLLFTFVLATEHTRTQCIKSSLQDHGTAILQ 761
Query: 1197 GITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251
+T + L+G++ L F + + F+ L LH V LPV L+ F PPS
Sbjct: 762 NVT-SFLIGLVPLLFVPSNL-TFTLFKCLLLTGGCTLLHCFVILPVFLTFF-PPS 813
>sp|Q03602|PTR9_CAEEL Patched-related protein 9 OS=Caenorhabditis elegans GN=ptr-9 PE=3
SV=2
Length = 844
Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 101/206 (49%), Gaps = 9/206 (4%)
Query: 1063 EFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSA 1122
E+ +V ++ Q F Y ++ +Q + ++++ AI + +C++ S+
Sbjct: 636 EYMRKVMENSQFNGFVYDTSFLLVDQQMTTVYNVIVDVVSAILTMLSICVLMVPRPVSAM 695
Query: 1123 IILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQR 1182
I + + + ++G +A +L+ +S++ +VM+VG +V++ H T F + ++ R
Sbjct: 696 CIAFAILSVNIGVIGALAATNTRLDIISMITIVMSVGFSVDYVTHTTFHFVIQ---RDNR 752
Query: 1183 MKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 1242
+++ L M + L+ +GV +L F + + V + +V LG LHGL+FLPV
Sbjct: 753 LEKCLLVMTEPILQS-ALSTAIGVSLLSFVHSYI-VRTFVNTVFFVVGLGILHGLIFLPV 810
Query: 1243 VLSVFGPPSRCML----VERQEERPS 1264
+L P S M+ EE P+
Sbjct: 811 LLDTIVPDSEYMVPYEPQHEDEENPN 836
Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 98/196 (50%), Gaps = 16/196 (8%)
Query: 603 LPMVQSKNLTLAFSSESSIEEELKREST-----ADAITIVISYLVMFAYISLTLGDTPHL 657
+P + N T+ +SS S+ +E++R ++V+ MFA SL +
Sbjct: 235 IPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMPWTSLVLVVFCMFACSSLNI------ 288
Query: 658 SSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCIL 717
+ S+ +G + ++ + S + L ++ ++PFLV+++G DNM ++
Sbjct: 289 ----VKSQPFIGFFAMFNATMATIASTSLLLYLQYP-FLPLVFIMPFLVVSIGTDNMFLM 343
Query: 718 VHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALA 777
+ + + + E R +AL E S+ L SL++ L+FA+GS A RVF + A+A
Sbjct: 344 LKSWRMTKKSSNEEQRYIHALTESAASLFLTSLTDGLSFAIGSISDFHAVRVFCTYCAMA 403
Query: 778 VLLDFLLQITAFVALI 793
+L FL Q+T F A++
Sbjct: 404 ILFMFLFQVTFFNAVM 419
>sp|Q3KNS1|PTHD3_HUMAN Patched domain-containing protein 3 OS=Homo sapiens GN=PTCHD3 PE=1
SV=3
Length = 767
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 106/463 (22%), Positives = 175/463 (37%), Gaps = 46/463 (9%)
Query: 356 RTRNRIQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRF--EVETRPE 413
R R+R ++G +S ++ G V +P + L + L L G + + E E
Sbjct: 109 RHRHRCHTDCLEGLLSRTFQWLGWQVGAHPWIFLLAPLMLTAALGTGFLYLPKDEEEDLE 168
Query: 414 KLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLL----- 468
+ + GS A E+ F H F + + +T N S++ S L
Sbjct: 169 EHYTPVGSPAKAERRFVQGH---FTTNDSYRFSASRRSTEANFVSLLVVSYSDSLLDPAT 225
Query: 469 FEIQKKIDG----LR-ANYSGSMISLTDICMK------PLGQDCATQSVLQYFKMDPKNF 517
F K+DG LR A GS I +C + P V + + +F
Sbjct: 226 FAEVSKLDGAVQDLRVAREKGSQIQYQQVCARYRALCVPPNPILYAWQVNKTLNLSSISF 285
Query: 518 DDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAV 577
+ H Y ++ F G +LG G A A + Y +
Sbjct: 286 PAYNHGRHPLY-----------LTGFFGGYILGGSLG--MGQLLLRAKAMRLLYYLKTE- 331
Query: 578 DREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIV 637
D E + K Q L KN+ E L R+ +A ++
Sbjct: 332 DPEYDVQSK---------QWLTHLLDQFTNIKNILALKKIEVVHFTSLSRQLEFEATSVT 382
Query: 638 ISYLVMFAYISLTLGDTPHLSSFY-ISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696
+ + AYI + L F I +K+ + GV+ L+V+ G IGV +
Sbjct: 383 VIPVFHLAYILIILFAVTSCFRFDCIRNKMCVAAFGVISAFLAVVSGFGLLLHIGVPFVI 442
Query: 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAF 756
I+ PFL+L VGVD+M I++ A + L + R+SN + SIT+ +++ +LA
Sbjct: 443 IVANS-PFLILGVGVDDMFIMISAWHKTNLADDIRERMSNVYSKAAVSITITTITNILAL 501
Query: 757 AVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799
G + + F ++ + +L + IT F A + D R
Sbjct: 502 YTGIMSSFRSVQCFCIYTGMTLLFCYFYNITCFGAFMALDGKR 544
>sp|Q14B62|PTHD1_MOUSE Patched domain-containing protein 1 OS=Mus musculus GN=Ptchd1 PE=2
SV=2
Length = 888
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 87/443 (19%), Positives = 180/443 (40%), Gaps = 50/443 (11%)
Query: 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSH 433
+ + G ++A +P S + + +LL R++VE E L S A E+ +S
Sbjct: 14 FSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLVNS- 72
Query: 434 LAPFYRIEELILATIPD--------TTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGS 485
L P R + + + + T +++ + + L+ ++ + ++ G
Sbjct: 73 LFPVNRSKHRLYSDLQTPGRYGRVIVTSYQKANMLDQHHTDLILKLHTAVTKIQVPRPGF 132
Query: 486 MISLTDICMKPLGQDCATQSVLQYFK----MDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541
+ IC+ + C ++ + N +F + Y H + +
Sbjct: 133 NYTFAHICVLNNDKTCIVDDIVHVLEELKNARATNRTNFA----ITYPITHLKDGRAVYN 188
Query: 542 AFKGPLDPSTALGG---FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQ 596
+ LGG S + A A +TY + + N VA WE +F
Sbjct: 189 GHQ--------LGGVTVHSKDRVKSAEAIQLTYYLQSI-----NSLNDMVAERWESSFCD 235
Query: 597 LAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMFAYISLTLGDT 654
K L SK ++S SS+ E+ ++ S +V S + V A + ++ D
Sbjct: 236 TVK--LFQKSNSKVKIYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDC 292
Query: 655 PHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714
+ SK LGL G+V + L+ L + G + G K + V PF++L G+
Sbjct: 293 -------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PFVMLGHGLYGT 344
Query: 715 CILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FIPMPACRVFSM 772
++ + ++ + + ++ R + + S +L + ++ F +G+ F + A R+F
Sbjct: 345 FEMLSSWRKTREDQHVKERTAEVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCC 404
Query: 773 FAALAVLLDFLLQITAFVALIVF 795
+ +A+L ++L ++ + + +VF
Sbjct: 405 NSCIAILFNYLYVLSFYGSSLVF 427
Score = 40.4 bits (93), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 1124 ILLVLTMIVVD--LMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKN 1180
+ + LT++ V+ ++G M + K++L+ +SV+ L+ + ++ C + F + +
Sbjct: 725 VWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPLLSTFVLGKDFTRT 784
Query: 1181 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFL 1240
+ +K AL G ++ L +VG+ L + + + ++L + + F H L
Sbjct: 785 KWVKNALEVHGVAILQSY-LCYIVGLFPLAAVPSNLTCTLFRCLFL-IAFVTFFHCFAIL 842
Query: 1241 PVVLSVFGPPS 1251
PV+L+ F PPS
Sbjct: 843 PVILT-FLPPS 852
>sp|Q5RIV7|PTHD1_DANRE Patched domain-containing protein 1 OS=Danio rerio GN=ptchd1 PE=3
SV=1
Length = 897
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 106/484 (21%), Positives = 199/484 (41%), Gaps = 61/484 (12%)
Query: 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLL-CLGLIRFEVETRPEKLWVGPGSRA 423
I +G ++FY G +V+R+P L++ L ++ L RF+ ET E L V P
Sbjct: 6 IHRGLKASFYW-LGLFVSRHPVFFLTVPAVLTIIFGSTVLSRFKPETDLEIL-VAPTHSL 63
Query: 424 AE----------------EKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKL 467
A+ KL+ D H R LIL + GN+ + +
Sbjct: 64 AKIERSLANSLFPIDQSKHKLYSDLHTPG--RYGRLILLA---RSGGNILELAEQ----- 113
Query: 468 LFEIQKKIDGLRANYSGSMISLTDIC-MKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHV 526
+ ++ KK+ +R NY G + +C ++ + C ++ F+ V
Sbjct: 114 VLQVHKKVLDMRVNYKGFNYTFAHLCVLRHRDKRCLLDDIITIFEDIRLAVLSNSTFSKV 173
Query: 527 KYCFQHYTSTESCMSAFKGPLDPSTALGGFS--GNNYSEASAFVVTYPVNNAVDREGNET 584
+ + T + +S F G LGG + NN + F + + G
Sbjct: 174 PVSYPNTTLKDGRVS-FIGH-----QLGGVALPANNRDQQVKFARAIQITYYLRNLGPVV 227
Query: 585 KKAVA--WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKREST--ADAITIVISY 640
+ +A WE F +L S+ L + + S+ + + + + +
Sbjct: 228 QDIIAEKWETEFCKLVHQL---ATDSQELHIQSLTSFSLWRDFHKTGVLAKSEVLVSLVL 284
Query: 641 LVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG-FFSAIG-VKSTLII 698
+++ A IS ++ D + K LGL GV+ + ++ + + G FF + G STL+
Sbjct: 285 VLLAATISSSMRDC-------LRGKPFLGLLGVLTICIANVTAAGIFFISDGKFNSTLL- 336
Query: 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAV 758
IPF + G + L+ +R + LP + R+++A +V T+ S ++ F +
Sbjct: 337 --GIPFFAMGHGTKGVFELLAGWRRTRESLPFKERVADAFADVMVCYTMTSSLYIITFGM 394
Query: 759 GS--FIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSS- 815
G+ F + + +VF +AVL+++ + + + +VF + E R + C K+ S
Sbjct: 395 GASPFTNIESVKVFCQSMCVAVLVNYFYVFSFYGSCLVFAG-QLEQNRYHSVFCCKIPSV 453
Query: 816 SYAD 819
Y D
Sbjct: 454 EYLD 457
Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 1089 YLDIWRTALINLAIAIGAVFVVCLITTC--------SFWSSAIILLVLTMIVVDLMGVMA 1140
++D + +++I+ + G + LI T +FW ++L +T + + ++G+M
Sbjct: 690 FMDRYSSSIISPILTSGFSVLTILILTFFLVINPLGNFW----LILTVTSVELGVLGLMT 745
Query: 1141 ILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGD-KNQRMKEALGTMGASVFSGIT 1199
+ + ++++S++ L+ + A++ C + F +++ + Q +K +L GA++ T
Sbjct: 746 LWNVDMDSISILCLIYTLNFAMDHCAPHLYTFVLATEHTRTQCIKISLEEHGAAILQN-T 804
Query: 1200 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251
++G++ L F + + F+ L LH V LPV L+ F PPS
Sbjct: 805 SCFVIGIMPLLFVPSNL-TYTLFKCSLLTAGCTVLHCFVILPVFLTFF-PPS 854
>sp|Q96NR3|PTHD1_HUMAN Patched domain-containing protein 1 OS=Homo sapiens GN=PTCHD1 PE=2
SV=2
Length = 888
Score = 53.9 bits (128), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 85/443 (19%), Positives = 179/443 (40%), Gaps = 50/443 (11%)
Query: 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSH 433
+ + G ++A +P S + + +LL R++VE E L S A E+ +S
Sbjct: 14 FSRLGHFIASHPVFFASAPVLISILLGASFSRYQVEESVEHLLAPQHSLAKIERNLVNS- 72
Query: 434 LAPFYRIEELILATIPD--------TTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGS 485
L P R + + + + T +++ + + L+ ++ + ++ G
Sbjct: 73 LFPVNRSKHRLYSDLQTPGRYGRVIVTSFQKANMLDQHHTDLILKLHAAVTKIQVPRPGF 132
Query: 486 MISLTDICMKPLGQDCATQSVLQYFK----MDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541
+ IC+ + C ++ + N +F + Y H + +
Sbjct: 133 NYTFAHICILNNDKTCIVDDIVHVLEELKNARATNRTNFA----ITYPITHLKDGRAVYN 188
Query: 542 AFKGPLDPSTALGG---FSGNNYSEASAFVVTYPVNNAVDREGNETKKAVA--WEKAFVQ 596
+ LGG S + A A +TY + + N VA WE +F
Sbjct: 189 GHQ--------LGGVTVHSKDRVKSAEAIQLTYYLQSI-----NSLNDMVAERWESSFCD 235
Query: 597 LAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYL--VMFAYISLTLGDT 654
+ L SK ++S SS+ E+ ++ S +V S + V A + ++ D
Sbjct: 236 TVR--LFQKSNSKVKMYPYTS-SSLREDFQKTSRVSERYLVTSLILVVTMAILCCSMQDC 292
Query: 655 PHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714
+ SK LGL G+V + L+ L + G + G K + V PF++L G+
Sbjct: 293 -------VRSKPWLGLLGLVTISLATLTAAGIINLTGGKYNSTFLGV-PFVMLGHGLYGT 344
Query: 715 CILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGS--FIPMPACRVFSM 772
++ + ++ + + ++ R + + S +L + ++ F +G+ F + A R+F
Sbjct: 345 FEMLSSWRKTREDQHVKERTAAVYADSMLSFSLTTAMYLVTFGIGASPFTNIEAARIFCC 404
Query: 773 FAALAVLLDFLLQITAFVALIVF 795
+ +A+ ++L ++ + + +VF
Sbjct: 405 NSCIAIFFNYLYVLSFYGSSLVF 427
Score = 42.0 bits (97), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 1124 ILLVLTMIVVD--LMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKN 1180
+ + LT++ V+ ++G M + K++L+ +SV+ L+ + ++ C + F + +
Sbjct: 725 VWITLTVVSVEFGVIGFMTLWKVELDCISVLCLIYGINYTIDNCAPMLSTFVLGKDFTRT 784
Query: 1181 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFL 1240
+ +K AL G ++ L +VG+I L + + + ++L + + F H L
Sbjct: 785 KWVKNALEVHGVAILQSY-LCYIVGLIPLAAVPSNLTCTLFRCLFL-IAFVTFFHCFAIL 842
Query: 1241 PVVLSVFGPPS 1251
PV+L+ F PPS
Sbjct: 843 PVILT-FLPPS 852
>sp|Q6R5J2|DISP1_DANRE Protein dispatched homolog 1 OS=Danio rerio GN=disp1 PE=2 SV=1
Length = 1464
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 98/220 (44%), Gaps = 18/220 (8%)
Query: 1043 TYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRT------- 1095
TYH L Y + RE + + + L+ P + Y +F L+ +
Sbjct: 912 TYHFTL----AYEKMHQFYREVDTWIQEELRDA--PEGLSYGWFVSNLEFYDLQDSLSDG 965
Query: 1096 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLV 1155
LI +A+++ F V L+TT + S ++ + + +G + +L +LN + V +
Sbjct: 966 TLIAMALSVVVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTIS 1025
Query: 1156 MAVGIAVEFCVHITHAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT 1214
+AVG++V+F VH A+ ++ D+ ++ +L MG+++ T + G +++ +
Sbjct: 1026 VAVGLSVDFAVHYGVAYRLAPEPDREGKVVFSLSRMGSAIAMAALTTFVAGAMMM---PS 1082
Query: 1215 EVFVVYYFQMYLALVL-LGFLHGLVFLPVVLSVFGPPSRC 1253
V +L L++ + + F + + GP C
Sbjct: 1083 TVLAYTQLGTFLMLIMCISWAFATFFFQCMCRLLGPQGTC 1122
>sp|Q3TDN0|DISP1_MOUSE Protein dispatched homolog 1 OS=Mus musculus GN=Disp1 PE=1 SV=2
Length = 1521
Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 1097 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 1156
LI + +++ F V L+TT + S ++ + + +G + +L +LN + V + +
Sbjct: 983 LIAMGLSVAVAFSVMLLTTWNIIISLYAIVSIAGTIFVTVGSLVLLGWELNVLESVTISV 1042
Query: 1157 AVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
AVG++V+F VH A+ ++ D+ ++ +L MG+++ T + G +++ +
Sbjct: 1043 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRMGSAIAMAALTTFVAGAMMM---PST 1099
Query: 1216 VFVVYYFQMYLALVL-LGFLHGLVFLPVVLSVFGPPSRC 1253
V ++ LV+ + + F + GP C
Sbjct: 1100 VLAYTQLGTFMMLVMCVSWAFATFFFQCLCRCLGPQGTC 1138
>sp|P14773|HMDH_DROME 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Drosophila
melanogaster GN=Hmgcr PE=2 SV=2
Length = 920
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 12/176 (6%)
Query: 629 STADAI--TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686
+ AD I TIV V++ Y S + SK +LG++G+ V S + +
Sbjct: 103 NAADVILMTIVRCTAVLYCYYQFC-------SLHRLGSKYVLGIAGLFTVFSSFIFTTAI 155
Query: 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT 746
+G + + + + FL+L + + N L + + I+ L +GP+I+
Sbjct: 156 IKFLGSDISEL-KDALFFLLLVIDLSNSGRLAQLALSGSNQAEVTQNIARGLELLGPAIS 214
Query: 747 LASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL--IVFDFLRA 800
L ++ EVL VG+ + V MFA L+VL+++++ +T + A ++FD R+
Sbjct: 215 LDTIVEVLLVGVGTLSGVQRLEVLCMFAVLSVLVNYVVFMTFYPACLSLIFDLSRS 270
>sp|O42335|PTC1_CYNPY Protein patched homolog 1 (Fragment) OS=Cynops pyrrhogaster GN=PTC1
PE=2 SV=1
Length = 257
Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 60/114 (52%), Gaps = 11/114 (9%)
Query: 582 NETKKAV---AWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVI 638
NE K A AW++ +V++ + P S L+F++ +++++ LK S I +
Sbjct: 151 NEDKAAAILEAWQRMYVEVVHQSV-PQ-NSTQKVLSFTT-TTLDDILKSFSDISVIRVAS 207
Query: 639 SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 692
YL+M AY LT+ L S+ +GL+GV+LV LSV +G S IG+
Sbjct: 208 GYLLMLAYACLTM-----LRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLIGI 256
>sp|Q96F81|DISP1_HUMAN Protein dispatched homolog 1 OS=Homo sapiens GN=DISP1 PE=2 SV=3
Length = 1524
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 75/159 (47%), Gaps = 5/159 (3%)
Query: 1097 LINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 1156
LI + +++ F V L+TT + S ++ + + +G + +L +LN + V + +
Sbjct: 985 LIAMGLSVAVAFSVMLLTTWNIIISLYAIISIAGTIFVTVGSLVLLGWELNVLESVTISV 1044
Query: 1157 AVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE 1215
AVG++V+F VH A+ ++ D+ ++ +L +G+++ T + G +++ +
Sbjct: 1045 AVGLSVDFAVHYGVAYRLAPDPDREGKVIFSLSRVGSAMAMAALTTFVAGAMMM---PST 1101
Query: 1216 VFVVYYFQMYLALVL-LGFLHGLVFLPVVLSVFGPPSRC 1253
V ++ L++ + + F + GP C
Sbjct: 1102 VLAYTQLGTFMMLIMCISWAFATFFFQCMCRCLGPQGTC 1140
Score = 38.1 bits (87), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 24/184 (13%)
Query: 618 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLV- 676
S ++ L ++ AI IVI LVM Y S +I+ + + ++V
Sbjct: 493 HSLFQDYLLMDTVYPAIAIVIVLLVMCVYT----------KSMFITLMTMFAIISSLIVS 542
Query: 677 --MLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELP-LETR 733
+ V+ FF + + + +I+ + +G D+ +L + + P ET
Sbjct: 543 YFLYRVVFHFEFFPFMNLTALIIL--------VGIGADDAFVLCDVWNYTKFDKPHAETS 594
Query: 734 --ISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791
+S L S+ + S + AF + A R F ++A A+L++++L +T A
Sbjct: 595 ETVSITLQHAALSMFVTSFTTAAAFYANYVSNITAIRCFGVYAGTAILVNYVLMVTWLPA 654
Query: 792 LIVF 795
++V
Sbjct: 655 VVVL 658
>sp|A3KFU9|PTHD2_MOUSE Patched domain-containing protein 2 OS=Mus musculus GN=Ptchd2 PE=2
SV=1
Length = 1347
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 624 ELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 683
E++R D + IS + A + + + LS F I+S +GLS +V + L
Sbjct: 409 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIAS---IGLSCLVALFL----- 460
Query: 684 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVG 742
+ G++ I+ V F+++ +GVD++ + ++ ++ LE P + R+ + + G
Sbjct: 461 --YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDP-QLRMIHTIQTAG 517
Query: 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+ SL+ A+A F +PA F +F +L V
Sbjct: 518 KATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 553
Score = 34.7 bits (78), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/115 (21%), Positives = 48/115 (41%), Gaps = 35/115 (30%)
Query: 1109 VVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHI 1168
+VCL+ T +WS ++ AV ++L + VG +V++CVH+
Sbjct: 1173 IVCLVVTIMYWSG----------------------WEMGAVEAISLSILVGSSVDYCVHL 1210
Query: 1169 THAFSVS------------SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCF 1211
+ ++ S + R EA+ +G ++ S LT ++ + L F
Sbjct: 1211 VEGYLLAGENLPPQLSQDPSSQRQWRTLEAVRHVGVAIVSS-ALTTVIATVPLFF 1264
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2
SV=2
Length = 1392
Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 624 ELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGS 683
E++R D + IS + A + + + LS F I+S +GLS +V + L
Sbjct: 454 EVRRTFNNDMLLAFISSSCIAALVYILTSCSVFLSFFGIAS---IGLSCLVALFL----- 505
Query: 684 VGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR-QQLELPLETRISNALVEVG 742
+ G++ I+ V F+++ +GVD++ + ++ ++ LE P + R+ + + G
Sbjct: 506 --YHVVFGIQYLGILNGVAAFVIVGIGVDDVFVFINTYRQATHLEDP-QLRMIHTVQTAG 562
Query: 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778
+ SL+ A+A F +PA F +F +L V
Sbjct: 563 KATFFTSLTTAAAYAANVFSQIPAVHDFGLFMSLIV 598
>sp|Q6R5J1|DISP2_DANRE Protein dispatched homolog 2 OS=Danio rerio GN=disp2 PE=2 SV=1
Length = 1476
Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 1121 SAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-SGDK 1179
S + + + V +G++ +L+ QLN V + + A G++V+F + ++S++ D+
Sbjct: 1022 SVYVSIAVAGSVFATVGLLVLLEWQLNGVEALFISAAAGLSVDFVANYCISYSLAPHSDR 1081
Query: 1180 NQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVF 1239
R+ ++ MG V +G VG+I+L + + F + + V GF F
Sbjct: 1082 LGRVAHSIKRMGCPVATGAGAYFCVGIIMLPATALLFRKLGIFLLLVKCVACGF--ATFF 1139
Query: 1240 LPVVLSVFGPPSRC 1253
+ FGP + C
Sbjct: 1140 FQSLCCFFGPQNNC 1153
>sp|A7Z064|HMDH_BOVIN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Bos taurus
GN=HMGCR PE=2 SV=2
Length = 888
Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L V + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLVDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|O42334|PTC2_CYNPY Protein patched homolog 2 (Fragment) OS=Cynops pyrrhogaster GN=PTC2
PE=2 SV=1
Length = 255
Score = 42.7 bits (99), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 8/103 (7%)
Query: 590 WEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISL 649
W++ FV+LA+ S + AFS+ +++ + +K S I + YL+M AY +
Sbjct: 160 WQRKFVELAQQSAPE--NSSQIIHAFST-TTLNDIMKSFSDVSVIRVAGGYLLMLAYACV 216
Query: 650 TLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGV 692
T+ L S+ +GL+GV+LV LSV +G S +G+
Sbjct: 217 TM-----LRWDCTKSQGAVGLAGVLLVALSVASGLGLCSLLGI 254
>sp|P04035|HMDH_HUMAN 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Homo sapiens
GN=HMGCR PE=1 SV=1
Length = 888
Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q29512|HMDH_RABIT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Oryctolagus
cuniculus GN=HMGCR PE=3 SV=1
Length = 888
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q5R6N3|HMDH_PONAB 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Pongo abelii
GN=HMGCR PE=2 SV=1
Length = 888
Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASTLAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P09610|HMDH_MESAU 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mesocricetus
auratus GN=HMGCR PE=1 SV=1
Length = 887
Score = 42.4 bits (98), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|Q12649|HMDH_PHYB8 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Phycomyces
blakesleeanus (strain ATCC 8743b / FGSC 10004 / NBRC
33097 / NRRL 1555) GN=hmgA PE=3 SV=2
Length = 1176
Score = 42.4 bits (98), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 87/192 (45%), Gaps = 17/192 (8%)
Query: 621 IEEELKRESTADAITIVISYLVMFA-YISLTLGDTPHLSSFYISSKVLL-GLSGVVLVML 678
++E + D I I++ Y++M A +ISL + S + +++ V+ G +L +L
Sbjct: 290 VKELIDLADNIDIIVILVGYIMMIATFISLYVNMRAMGSRYTLATAVVFNGFFSFMLALL 349
Query: 679 SVLGSVGFFSAIGVKS-TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPL-----ET 732
+V A+GV +++ E IPFL + +G + L V + E PL T
Sbjct: 350 TV-------RALGVDVYPVVLAEAIPFLAVTIGFERPFKLTKRVFQFSKETPLTKQEIRT 402
Query: 733 RISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792
I A+ V I E++ +G+ + F + +A+ + DF++ T + A+
Sbjct: 403 TIMRAVDTVALPIARDCFMEIIVLVLGAKSGISGLEEFCLLSAILLAYDFIIMFTWYTAV 462
Query: 793 IV--FDFLRAED 802
+ + LR +
Sbjct: 463 LALKLELLRIRE 474
>sp|Q01237|HMDH_MOUSE 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Mus musculus
GN=Hmgcr PE=2 SV=3
Length = 887
Score = 42.4 bits (98), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P00347|HMDH_CRIGR 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Cricetulus
griseus GN=HMGCR PE=1 SV=1
Length = 887
Score = 42.0 bits (97), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
>sp|P51639|HMDH_RAT 3-hydroxy-3-methylglutaryl-coenzyme A reductase OS=Rattus
norvegicus GN=Hmgcr PE=1 SV=2
Length = 887
Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 630 TADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSA 689
++D I + I+ + YI + L S YI LG++G+ + S + FS
Sbjct: 59 SSDIIILTITRCIAILYIYFQFQNLRQLGSKYI-----LGIAGLFTIFSSFV-----FST 108
Query: 690 IGV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSI 745
+ + K + E +PF +L + + L + + I+ + +GP+
Sbjct: 109 VVIHFLDKELTGLNEALPFFLLLIDLSRASALAKFALSSNSQDEVRENIARGMAILGPTF 168
Query: 746 TLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793
TL +L E L VG+ + + F ++VL ++ + +T F A +
Sbjct: 169 TLDALVECLVIGVGTMSGVRQLEIMCCFGCMSVLANYFVFMTFFPACV 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,632,062
Number of Sequences: 539616
Number of extensions: 18146570
Number of successful extensions: 59546
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 59218
Number of HSP's gapped (non-prelim): 212
length of query: 1268
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1139
effective length of database: 121,958,995
effective search space: 138911295305
effective search space used: 138911295305
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 67 (30.4 bits)