Query 000819
Match_columns 1268
No_of_seqs 404 out of 2860
Neff 7.2
Searched_HMMs 46136
Date Tue Apr 2 00:00:48 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00917 2A060601 Niemann-Pic 100.0 3E-203 6E-208 1963.7 107.2 1140 53-1248 1-1204(1204)
2 KOG1933 Cholesterol transport 100.0 2E-177 5E-182 1645.4 42.6 1131 51-1257 1-1184(1201)
3 TIGR00918 2A060602 The Eukaryo 100.0 7E-128 2E-132 1227.4 74.2 851 365-1257 38-1127(1145)
4 PF02460 Patched: Patched fami 100.0 2.8E-92 6.2E-97 909.2 65.4 748 400-1247 2-797 (798)
5 KOG1934 Predicted membrane pro 100.0 6.1E-90 1.3E-94 858.8 69.1 782 365-1251 4-834 (868)
6 KOG1935 Membrane protein Patch 100.0 5.6E-74 1.2E-78 670.0 46.7 853 365-1257 54-1080(1143)
7 COG1033 Predicted exporters of 100.0 2.6E-58 5.7E-63 563.9 61.0 705 374-1251 2-725 (727)
8 TIGR00921 2A067 The (Largely A 100.0 9.3E-52 2E-56 530.6 65.0 690 383-1246 2-719 (719)
9 TIGR00833 actII Transport prot 100.0 2.9E-41 6.3E-46 438.6 65.3 724 383-1251 1-907 (910)
10 TIGR03480 HpnN hopanoid biosyn 100.0 6.8E-39 1.5E-43 416.6 53.0 559 608-1244 246-856 (862)
11 COG1033 Predicted exporters of 100.0 6.8E-27 1.5E-31 287.9 33.4 361 366-800 364-725 (727)
12 PF12349 Sterol-sensing: Stero 100.0 3.4E-28 7.4E-33 250.8 15.0 152 661-812 1-152 (153)
13 TIGR00920 2A060605 3-hydroxy-3 99.9 6.8E-28 1.5E-32 293.3 14.6 168 631-805 60-228 (886)
14 TIGR00921 2A067 The (Largely A 99.9 1.5E-23 3.2E-28 269.9 37.6 352 369-795 367-719 (719)
15 PRK10503 multidrug efflux syst 99.9 2.5E-21 5.4E-26 255.2 47.2 190 1053-1248 827-1023(1040)
16 TIGR00915 2A0602 The (Largely 99.9 3E-21 6.4E-26 254.8 47.9 201 1054-1265 836-1042(1044)
17 PRK10555 aminoglycoside/multid 99.9 2.8E-20 6E-25 245.5 52.8 188 1054-1248 835-1027(1037)
18 PRK10614 multidrug efflux syst 99.9 1.1E-20 2.5E-25 249.2 48.2 190 1053-1248 813-1009(1025)
19 TIGR00914 2A0601 heavy metal e 99.9 1.8E-21 3.9E-26 257.9 40.5 166 1087-1253 871-1041(1051)
20 PRK13024 bifunctional preprote 99.9 2.4E-20 5.1E-25 236.1 47.6 441 634-1250 270-735 (755)
21 PRK09577 multidrug efflux prot 99.9 1.2E-20 2.6E-25 248.8 46.4 189 1054-1249 831-1024(1032)
22 PRK09579 multidrug efflux prot 99.9 2E-20 4.3E-25 246.2 46.0 199 1053-1257 808-1012(1017)
23 PRK15127 multidrug efflux syst 99.9 5.2E-20 1.1E-24 242.9 49.2 191 1053-1250 836-1032(1049)
24 COG2409 Predicted drug exporte 99.9 5.9E-19 1.3E-23 229.7 50.2 772 374-1254 3-923 (937)
25 TIGR00833 actII Transport prot 99.9 2.4E-20 5.1E-25 243.6 34.2 179 609-800 722-907 (910)
26 PF03176 MMPL: MMPL family; I 99.9 3.2E-20 7E-25 217.3 28.4 194 591-800 107-306 (333)
27 PRK14726 bifunctional preprote 99.8 1.6E-17 3.5E-22 209.4 45.6 437 636-1256 378-836 (855)
28 PF00873 ACR_tran: AcrB/AcrD/A 99.8 4.1E-19 8.9E-24 236.1 31.9 184 1058-1247 830-1020(1021)
29 PF03176 MMPL: MMPL family; I 99.8 8.4E-20 1.8E-24 213.8 19.4 208 1042-1251 91-306 (333)
30 COG0841 AcrB Cation/multidrug 99.8 2.3E-17 5E-22 213.4 37.5 591 608-1248 309-1007(1009)
31 PRK13023 bifunctional preprote 99.8 8.7E-16 1.9E-20 191.7 44.6 434 635-1249 283-735 (758)
32 TIGR03480 HpnN hopanoid biosyn 99.7 2.4E-16 5.3E-21 206.0 21.8 195 1054-1250 227-426 (862)
33 COG0841 AcrB Cation/multidrug 99.7 3.5E-16 7.5E-21 202.5 22.7 205 1040-1253 279-491 (1009)
34 PRK12911 bifunctional preprote 99.7 3.3E-13 7.1E-18 170.9 44.9 132 669-801 934-1066(1403)
35 PF02460 Patched: Patched fami 99.7 5E-14 1.1E-18 183.1 38.3 375 369-796 419-797 (798)
36 PRK09579 multidrug efflux prot 99.7 4.7E-15 1E-19 195.7 24.7 194 1052-1250 290-491 (1017)
37 PRK10614 multidrug efflux syst 99.7 5.3E-15 1.2E-19 195.8 24.8 193 1053-1250 292-492 (1025)
38 PF00873 ACR_tran: AcrB/AcrD/A 99.6 2.7E-15 5.8E-20 199.9 20.6 199 1051-1253 289-495 (1021)
39 TIGR00915 2A0602 The (Largely 99.6 2.1E-14 4.5E-19 190.3 24.7 158 1090-1249 334-498 (1044)
40 PRK09577 multidrug efflux prot 99.6 2.1E-14 4.5E-19 190.1 24.4 194 1053-1250 297-498 (1032)
41 PRK15127 multidrug efflux syst 99.6 1.8E-14 3.9E-19 190.8 23.8 159 1090-1250 334-499 (1049)
42 PRK10555 aminoglycoside/multid 99.6 2E-14 4.4E-19 190.3 24.1 192 1054-1250 299-499 (1037)
43 PRK10503 multidrug efflux syst 99.6 2.3E-14 5E-19 189.6 24.3 161 1087-1249 334-500 (1040)
44 COG4258 Predicted exporter [Ge 99.6 3.6E-12 7.7E-17 148.5 36.8 161 615-793 240-402 (788)
45 COG3696 Putative silver efflux 99.6 1.3E-12 2.8E-17 159.7 33.6 576 608-1251 314-1022(1027)
46 TIGR00916 2A0604s01 protein-ex 99.6 5.8E-14 1.2E-18 150.7 17.7 128 1091-1220 44-176 (192)
47 PRK13022 secF preprotein trans 99.5 4.6E-13 9.9E-18 152.5 22.4 158 1090-1250 123-285 (289)
48 TIGR00914 2A0601 heavy metal e 99.5 2.1E-13 4.6E-18 181.5 22.8 187 1053-1249 301-508 (1051)
49 TIGR00918 2A060602 The Eukaryo 99.5 1.9E-11 4.1E-16 159.2 34.9 153 634-801 969-1122(1145)
50 TIGR00966 3a0501s07 protein-ex 99.5 2.3E-12 4.9E-17 144.0 21.6 144 1092-1238 96-244 (246)
51 KOG1934 Predicted membrane pro 99.5 2.4E-11 5.1E-16 154.4 33.1 373 372-799 456-833 (868)
52 TIGR01129 secD protein-export 99.5 2.8E-12 6.1E-17 151.9 20.9 151 1090-1244 244-397 (397)
53 PRK13024 bifunctional preprote 99.4 3E-12 6.5E-17 162.9 21.5 189 1059-1251 230-422 (755)
54 PRK13022 secF preprotein trans 99.4 5.7E-12 1.2E-16 143.5 21.5 167 618-801 118-287 (289)
55 PRK05812 secD preprotein trans 99.4 4.7E-12 1E-16 153.1 21.6 154 1091-1248 330-486 (498)
56 PRK08578 preprotein translocas 99.4 8.7E-12 1.9E-16 142.2 22.0 157 1090-1252 130-290 (292)
57 PRK14726 bifunctional preprote 99.4 1E-11 2.2E-16 157.5 22.0 190 1058-1251 335-528 (855)
58 TIGR00916 2A0604s01 protein-ex 99.4 5.1E-12 1.1E-16 135.8 14.3 137 635-785 52-191 (192)
59 PRK13023 bifunctional preprote 99.4 2.4E-11 5.2E-16 152.4 22.1 190 1058-1251 241-434 (758)
60 PRK12933 secD preprotein trans 99.3 7.9E-11 1.7E-15 142.9 19.8 159 1091-1251 433-597 (604)
61 COG3696 Putative silver efflux 99.3 1.5E-10 3.2E-15 142.1 20.8 193 1051-1250 295-498 (1027)
62 TIGR00917 2A060601 Niemann-Pic 99.3 1.4E-09 3E-14 145.0 31.7 149 634-796 1052-1203(1204)
63 PRK05812 secD preprotein trans 99.2 1.6E-10 3.6E-15 139.8 18.2 151 633-798 336-487 (498)
64 PRK12911 bifunctional preprote 99.2 5.4E-10 1.2E-14 142.4 21.0 153 1096-1252 911-1066(1403)
65 TIGR00966 3a0501s07 protein-ex 99.2 9.5E-10 2.1E-14 123.0 19.4 140 634-787 102-244 (246)
66 TIGR01129 secD protein-export 99.2 4.1E-10 8.8E-15 133.6 17.0 146 633-793 251-397 (397)
67 PRK13021 secF preprotein trans 99.2 1.9E-09 4.2E-14 122.5 21.0 159 1090-1251 122-285 (297)
68 PRK08578 preprotein translocas 99.2 1.6E-09 3.4E-14 123.8 20.5 161 619-801 126-290 (292)
69 PF02355 SecD_SecF: Protein ex 99.1 1.1E-09 2.4E-14 117.1 17.0 163 1083-1248 20-187 (189)
70 PRK08343 secD preprotein trans 99.1 3.3E-09 7.2E-14 126.1 21.5 176 1057-1242 223-404 (417)
71 PRK12933 secD preprotein trans 99.1 2.5E-09 5.5E-14 130.0 16.9 151 634-799 444-596 (604)
72 PF02355 SecD_SecF: Protein ex 99.0 1.3E-08 2.8E-13 108.9 19.6 163 619-798 23-188 (189)
73 PRK13021 secF preprotein trans 99.0 2E-08 4.3E-13 114.3 20.5 163 618-797 117-282 (297)
74 KOG3664 Predicted patched tran 99.0 6.7E-11 1.4E-15 147.1 -1.2 181 608-800 303-503 (999)
75 COG0341 SecF Preprotein transl 98.8 4.6E-07 1E-11 103.0 20.2 168 619-803 126-296 (305)
76 COG2409 Predicted drug exporte 98.7 8.5E-08 1.8E-12 126.1 15.6 197 1056-1254 146-350 (937)
77 PF12349 Sterol-sensing: Stero 98.7 1E-07 2.2E-12 98.9 13.0 129 1117-1247 5-136 (153)
78 COG0342 SecD Preprotein transl 98.6 1.3E-06 2.8E-11 106.3 19.3 156 1093-1252 342-500 (506)
79 COG0341 SecF Preprotein transl 98.6 1.5E-06 3.3E-11 98.8 17.8 162 1090-1254 130-296 (305)
80 PRK08343 secD preprotein trans 98.6 1.7E-06 3.7E-11 103.2 18.3 170 608-793 240-410 (417)
81 COG0342 SecD Preprotein transl 98.4 2.6E-06 5.6E-11 103.7 15.7 150 636-800 349-499 (506)
82 COG4258 Predicted exporter [Ge 98.4 1.1E-06 2.4E-11 103.6 11.8 153 615-791 630-782 (788)
83 KOG1935 Membrane protein Patch 98.4 3E-06 6.5E-11 103.0 14.7 127 1121-1250 444-571 (1143)
84 TIGR00920 2A060605 3-hydroxy-3 97.4 0.0011 2.5E-08 83.5 12.9 129 1118-1249 90-221 (886)
85 PF03024 Folate_rec: Folate re 95.4 0.0042 9.1E-08 65.6 0.0 96 85-188 16-117 (167)
86 KOG1933 Cholesterol transport 90.7 0.094 2E-06 69.4 0.9 172 615-800 1004-1178(1201)
87 KOG3664 Predicted patched tran 68.6 2.6 5.6E-05 54.9 1.8 137 1112-1251 343-503 (999)
88 PF08006 DUF1700: Protein of u 47.4 38 0.00083 36.2 6.0 21 1050-1070 42-62 (181)
89 TIGR00400 mgtE Mg2+ transporte 46.6 3.8E+02 0.0083 33.1 15.3 71 1181-1253 350-421 (449)
90 COG4709 Predicted membrane pro 44.1 1.6E+02 0.0036 31.6 9.7 21 1050-1070 42-62 (195)
91 COG2239 MgtE Mg/Co/Ni transpor 43.8 7.2E+02 0.016 30.8 17.6 98 1142-1253 322-421 (451)
92 COG3301 NrfD Formate-dependent 39.4 6.5E+02 0.014 29.0 15.1 97 673-774 140-240 (305)
93 PF01102 Glycophorin_A: Glycop 35.1 44 0.00095 33.5 3.7 11 305-315 83-93 (122)
94 PF05297 Herpes_LMP1: Herpesvi 33.1 14 0.00031 41.4 0.0 24 1097-1120 55-78 (381)
95 PF03649 UPF0014: Uncharacteri 30.1 8.6E+02 0.019 27.6 14.2 43 698-740 123-179 (250)
96 PF02754 CCG: Cysteine-rich do 30.0 66 0.0014 28.8 3.9 48 83-130 21-85 (85)
97 PRK02935 hypothetical protein; 28.1 2.2E+02 0.0047 27.7 6.8 30 667-696 38-67 (110)
98 PRK15081 glutathione ABC trans 27.7 1E+03 0.022 27.7 14.3 25 610-634 76-100 (306)
99 PRK10352 nickel transporter pe 26.5 1E+03 0.022 27.9 13.8 27 609-635 78-104 (314)
100 PF11023 DUF2614: Protein of u 26.1 2E+02 0.0043 28.4 6.3 30 667-696 37-66 (114)
101 PRK09471 oppB oligopeptide tra 25.2 8.6E+02 0.019 28.2 12.9 30 610-639 74-104 (306)
102 cd07912 Tweety_N N-terminal do 24.9 3.4E+02 0.0073 33.3 9.5 18 1228-1245 388-405 (418)
103 PRK15133 microcin C ABC transp 24.2 1.1E+03 0.025 28.2 13.8 25 610-634 114-138 (364)
104 PF05393 Hum_adeno_E3A: Human 23.6 1.3E+02 0.0029 28.1 4.3 27 298-324 42-68 (94)
105 PF09586 YfhO: Bacterial membr 22.3 1.5E+03 0.033 30.1 16.2 31 768-798 211-241 (843)
106 PRK10914 dipeptide transporter 21.9 1.4E+03 0.029 27.1 14.2 31 610-640 77-107 (339)
107 COG1480 Predicted membrane-ass 21.9 9.8E+02 0.021 31.0 12.8 29 1229-1257 443-471 (700)
108 PRK10263 DNA translocase FtsK; 21.4 1.2E+03 0.026 32.7 14.3 13 641-653 31-43 (1355)
109 PF09946 DUF2178: Predicted me 20.9 5.3E+02 0.011 25.5 8.4 20 763-782 89-108 (111)
110 PRK09804 putative cryptic C4-d 20.4 5.2E+02 0.011 32.0 9.9 68 1118-1193 242-312 (455)
111 TIGR00771 DcuC c4-dicarboxylat 20.4 1.6E+03 0.034 27.2 14.7 26 1144-1169 213-238 (388)
No 1
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=100.00 E-value=2.8e-203 Score=1963.70 Aligned_cols=1140 Identities=58% Similarity=0.968 Sum_probs=985.9
Q ss_pred eeecccCCCCCCCCcccCCCCCCCCCCChhhHHHHHhhCCCCC----CCCCCCHHHHHHHHHHHHhhhhhccCChhHHhh
Q 000819 53 CAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT----GNVCCTEDQFDTLRTQVQQAIPFLVGCPACLRN 128 (1268)
Q Consensus 53 C~~~g~C~~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~Cp~~~----~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~~N 128 (1268)
|+|||+||++++++++|||||++|++|+++.+++++++||+++ +++|||++|+++|++||++|+++++|||||++|
T Consensus 1 C~~yg~Cg~~s~~~~l~c~~~~~~~~~~~~~~~~l~~~C~~~~~~~~~~~CC~~~Q~~~l~~nl~~~~~~~~~CpaC~~N 80 (1204)
T TIGR00917 1 CVWYGICGARSDGKVLNCPYNGPSKKPPDDGSSLIQSLCGFSHPNISGNVCCTETQFDTLRSNVQLAIPFLVRCPACLRN 80 (1204)
T ss_pred CCccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHhCccccccCCCCCCCCHHHHHHHHHHHHHHHHHhCcChhHHHH
Confidence 9999999999999999999999999999999999999999854 479999999999999999999999999999999
Q ss_pred HhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCccCCCChhHhhhcCCC---CCCHHHH
Q 000819 129 FLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGGG---AQNFKDW 205 (1268)
Q Consensus 129 f~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg~---a~~~~~~ 205 (1268)
|+|+||+||||||||+||+||++++.+++..|+|+||||+++||+++|||||||++|++|++|||+|||| +|||++|
T Consensus 81 ~~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~i~~~i~~~~a~~~y~SCk~v~~~~~~~~Amd~~cG~~~~~c~~~~w 160 (1204)
T TIGR00917 81 LLNLFCELTCSPDQSLFMNVTSTTKVKTNSTVDSVQYYITDDFANGMYNSCSNVKFPSSNSRALDFLCGGAANFCNWTNW 160 (1204)
T ss_pred HHHHhcCCCcCcCccCceeeEEeccCCCCceEEEEEEEECHHHHHHHHHHhhCcccCCCchHHHHhccCCCcCCCCHHHH
Confidence 9999999999999999999999976556667999999999999999999999999999999999999998 7999999
Q ss_pred HHhhcccCCCCCCCCceeEEecCCCCC-CCCcccCCCCCcCCCCC----CCCccccCCCCCCCCCCCCCCCCCCCCceEe
Q 000819 206 FAFIGRRAAANLPGSPYTIKFWPSAPE-LSGMIPMNVSAYSCADG----SLGCSCGDCTSSPVCSSTAPPPHKSSSCSVK 280 (1268)
Q Consensus 206 l~flG~~~~~~~~~sPf~inf~~~~~~-~~~~~~~~~~~~~C~~~----~~~CsC~dC~~~~sC~~~~~~~~~~~~c~~~ 280 (1268)
|+||||++ +++|||||||+++... ..+++|||..+++|||. .++|||+||++ |||.+|++++++++|+++
T Consensus 161 ~~f~G~~~---~~~~Pf~i~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~csc~dc~~--~c~~~~~~~~~~~~~~~~ 235 (1204)
T TIGR00917 161 IGQMAGVN---NPGAPFGITFLPTPCPVSSGMRPMNVSTYSCGDAVLGCSCGCSCSDCDC--SCKAKPPTPPKPSCSIIL 235 (1204)
T ss_pred HHhcCCCC---CCCCCeeEEeccCCCccccCcccCCCCCccCCCccCCCCCCccCcCchh--hCCCCCCCCCCCCceEEE
Confidence 99999984 2589999999987532 34899999999999986 48999999999 999877777778888886
Q ss_pred ecCCccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCcccchhhhccccCcchhhhccCCCccccc
Q 000819 281 MGSLNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNR 360 (1268)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (1268)
. ++|++|+++++|.+++++++.|++..+++++++..........++.. .+. .+.++. .+....+ .
T Consensus 236 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~--~~~~~~~------~ 300 (1204)
T TIGR00917 236 G----VDAYDVIMAILYIVLVLVFLGGGLLFPVRGKKKTSFMGTLSEASGEI-NSS--NNQSDQ--NTPQRNE------G 300 (1204)
T ss_pred c----CcchhHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccc-ccc--cccccc--ccccccc------c
Confidence 4 67999999999988777776665554433322211111100000000 000 000000 0101111 1
Q ss_pred chhhhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCce
Q 000819 361 IQLSIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRI 440 (1268)
Q Consensus 361 ~~~~~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~ 440 (1268)
..++++++++++|++||.|++||||++|++++++++++++|+.++++|+||+++|+|+++++++|+++||++|||++|+
T Consensus 301 -~~~~~~~~l~~~F~~~G~~var~P~~vi~isllv~~~l~~Gl~~~~vetDpv~Lw~~~~s~ar~E~~~fd~~fgpf~r~ 379 (1204)
T TIGR00917 301 -QLATVEGHLARFFTKYGIWVARNPGLVLCLSVSVVLLLGVGLIFFEVETDPVKLWVAPGSRAALEKEFFDTHFGPFYRI 379 (1204)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhCcccCChhhhcCCCCcHHHHHHHHHHHhcCCccce
Confidence 1358999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCC-CCcccchhhhhhhcCCCCCCC
Q 000819 441 EELILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLG-QDCATQSVLQYFKMDPKNFDD 519 (1268)
Q Consensus 441 eqiii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~-~~C~v~S~~~yf~~~~~~~~~ 519 (1268)
||+||++.+.+.....+++++++.|++++++|++|++++. ++++++|+|+||.+ ..|.++|+++|||++.+.+++
T Consensus 380 eqvii~~~~~~g~~~~g~Vl~~e~L~~v~~L~~~I~~l~~----~~~tl~diC~kp~~~~~C~v~S~~~yfq~~~~~l~~ 455 (1204)
T TIGR00917 380 EQLIIAAVQTSQHEKFPPVLDDDNLKLLFDIQKKISQLFA----NLITLDDICFAPLSPYNCFIYSTCGYFQNMYSKLDP 455 (1204)
T ss_pred EEEEEEecCCCccccCCccCCHHHHHHHHHHHHHHHhhhc----cCCChhccccccCCCCCCccCCHHHHhccChhhcCc
Confidence 9999987521110112469999999999999999999852 36899999999985 689999999999987654432
Q ss_pred C--------CCcccccccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHH
Q 000819 520 F--------GGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWE 591 (1268)
Q Consensus 520 ~--------~~~~~l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE 591 (1268)
. +|.+++.+|.+.+ .+|++.||+|++|+.++||+.++++.+|+|+++||.++|+.++ ++..+.+.+||
T Consensus 456 ~~~~~~~~~~~~~~~~~c~~~p---~~c~~~fg~pl~p~~~lgG~~~~~~~~A~Al~lT~~l~n~~~~-~~~~~~a~~WE 531 (1204)
T TIGR00917 456 ENYDDGFGVDYVKYCFECFTSP---ESCLSAFGGPVDPTTALGGFSGNNFSEASAFVVTFPVNNFVNK-TDKLEKAVAWE 531 (1204)
T ss_pred ccccccccccHHHhhhccccCc---chhcccCCCcCCcceeeCCcCCCCcccceEEEEEEEEecCCCC-chhhhHHHHHH
Confidence 1 2456667776543 4699999999999999999988889999999999999986433 23357899999
Q ss_pred HHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhH
Q 000819 592 KAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLS 671 (1268)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~ 671 (1268)
++|.+.++++..+. ...+++++|++++|+++|+++.+..|+++++++|++|++|+++++++++.+++++++||+++|++
T Consensus 532 ~~f~~~~~~~~~~~-~~~~l~~~~~te~Sl~del~~~s~~dv~~~~isyiim~~y~~l~l~~~~~~~~~~v~Sk~~l~l~ 610 (1204)
T TIGR00917 532 KAFIQFAKNYLLPN-VQAKLDISFSSERSIEDELKRESTADVITILVSYLVMFAYISLSLGHSKRFKSLFIDSKVLLGIS 610 (1204)
T ss_pred HHHHHHHHHhhccc-cccceEEEEeccccHHHHHhhccchhHHHHHHHHHHHHHHHHHHHccchhhhhhhhhhhhHHHHH
Confidence 99999998874321 12358999999999999999999999999999999999999999998766667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhc--CCC---------CHHHHHHHHHHh
Q 000819 672 GVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ--LEL---------PLETRISNALVE 740 (1268)
Q Consensus 672 gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~--~~~---------~~~~~i~~al~~ 740 (1268)
|++++++|+++++|+++++|+++++++++++|||+|||||||+|+++++|++.. ++. ++++|+++++++
T Consensus 611 gv~~v~~sv~~s~Gl~~~~Gi~~t~i~~~v~PFLvL~IGVD~ifilv~~~~r~~~~~~~~~~~~~~~~~~~~ri~~~l~~ 690 (1204)
T TIGR00917 611 GVLIVLASVVGSVGVFSYIGLKATLIIMEVIPFLVLAVGVDNIFILVQTYQRLERFYREVGVDNEQELTLEQQLGRALGE 690 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccccccccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999878999999999999999999999998753 222 789999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCC
Q 000819 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADS 820 (1268)
Q Consensus 741 ~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~ 820 (1268)
+|+||++|++|+++||++++++++|++|.||+++|+||+++|++|+|+|||+|++|.||++++|+|++||.+.++.....
T Consensus 691 ~G~sI~ltslt~~~aF~~g~~s~~Pavr~F~~~aa~av~~~fll~it~f~alL~ld~rR~~~~r~d~~~c~~~~~~~~~~ 770 (1204)
T TIGR00917 691 VGPSITLASLSESLAFFLGALSKMPAVRAFSLFAGLAVFIDFLLQITAFVALLVLDFKRTEDNRVDCFPCIKGSKSSISA 770 (1204)
T ss_pred hhHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccEEEeeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999865421110
Q ss_pred CCCcccccchhHHHHHH----------------------------HhhhccccCCccccccCCCchhhhHHHHHhhhccC
Q 000819 821 DKGIGQRKPGLLARYMK----------------------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRI 872 (1268)
Q Consensus 821 ~~~~~~~~~~~L~r~~k----------------------------~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~ 872 (1268)
........++++.++++ +++++|+.|+||++++|+|||+.+||+.+++||+.
T Consensus 771 ~~~~~~~~~~~l~~ff~~~yap~L~~~~vki~Vl~~f~~~~~~si~g~~~i~~gLd~~~~~p~dSyl~~yf~~~~~~~~~ 850 (1204)
T TIGR00917 771 EKGSGQRKEGLLTRFFKEVYAPFLLHWIVKIVVIAFFFGLLMFGIALATRIDIGLDQQLALPQDSYLQIYFASLTPLLEV 850 (1204)
T ss_pred ccCcCcccccHHHHHHHHhcchhhcCCCcceEEEehHHHHHHHHHHHHhhcCCCcCHhhhCCCCCcHHHHHHHHHHhhcc
Confidence 00001122333443332 57899999999999999999999999999999999
Q ss_pred CCCEEEEEe-cCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhccccccccc-ccCC
Q 000819 873 GPPLYFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTN 950 (1268)
Q Consensus 873 g~pvy~Vv~-~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~~~~~cc~-~~~~ 950 (1268)
|||||||++ ++||++++ +|+++|+..+|+++|+.++. ++.+++.+|+++|||||++|+++. .+||| +..+
T Consensus 851 gppvy~Vv~~~~dy~~~~-~q~~lc~~~~c~~~sl~~~~------~~~~~i~~~~~sWlddf~~wl~~~-~~cc~~~~~~ 922 (1204)
T TIGR00917 851 GPPVYFVLKGDYNYTDSE-SQNKVCTGGGCNKDSIVNVF------NNLTYIAKPASSWLDDYFDWASPQ-SSCCCRKFTN 922 (1204)
T ss_pred CCcEEEEEcCCCCCCCHH-HHHHHhcccCCcHHHHHHhh------cccchhcCCchHHHHHHHHHhCcc-ccceeecCCC
Confidence 999999999 68999875 57899999999999999955 455788999999999999999986 57998 4566
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCccccccccC
Q 000819 951 GSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKG 1030 (1268)
Q Consensus 951 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~~ 1030 (1268)
+.+|++.+ +.|..|+.......++|++++|++||++||+++|+.+|++||++.|++++++++
T Consensus 923 ~~~c~~~~------------------~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~ 984 (1204)
T TIGR00917 923 GTFCNGPD------------------PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQG 984 (1204)
T ss_pred CCcCCCcc------------------ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeec
Confidence 78887433 357777642222357999999999999999999999999999999999998765
Q ss_pred CCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1031 YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVV 1110 (1268)
Q Consensus 1031 ~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv 1110 (1268)
++++.|.+|||++||+++++++|++++++++|++++++++..++++|||+++|+|+|||.+|++++++++++++++|++|
T Consensus 985 ~~~~~I~aS~f~~~h~~l~~~~d~i~a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V 1064 (1204)
T TIGR00917 985 HANTIIQASYFMTYHTPLNTQADFINALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIV 1064 (1204)
T ss_pred CCCceEEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567999999999999999999999999999999999866789999999999999999999999999999999999999
Q ss_pred HHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccC-CCHHHHHHHHHH
Q 000819 1111 CLITT-CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALG 1188 (1268)
Q Consensus 1111 ~~ll~-~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~-~~~~~r~~~al~ 1188 (1268)
+++++ .+++++++++++|++++++++|+|++|||+||++|+++|+|+||++|||+.||.|+|.... +++.+|+++|++
T Consensus 1065 ~~l~l~l~~~~aliv~l~I~~i~~~~~g~M~~~gisLN~vSlv~Li~avGisV~f~~hI~~~f~~~~~~~~~~ra~~al~ 1144 (1204)
T TIGR00917 1065 TLVLLGLNALSAVNVVISVGMIVVNLVGIMHLWNISLNAVSVVNLVMAKGISIEFCSHINAQFSTSKHFSRNHRAKEALG 1144 (1204)
T ss_pred HHHHhcccchhHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 99998 4999999999999999999999999999999999999999999999999999999999864 589999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1189 TMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1189 ~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
++|+||++|+++||++|+++|+|+++++|++|||+|+++++++|++|||+||||+||++|
T Consensus 1145 ~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLPVlLS~~G 1204 (1204)
T TIGR00917 1145 GMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLPVLLSYIG 1204 (1204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999888999999999999999999999999999999999999999999999987
No 2
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=100.00 E-value=2.3e-177 Score=1645.35 Aligned_cols=1131 Identities=47% Similarity=0.831 Sum_probs=1000.5
Q ss_pred cCeeecccCCCCCCCCcccCCCCCC-CCCCChhhHHHHHhhCCCCCC---CCCCCHHHHHHHHHHHHhhhhhccCChhHH
Q 000819 51 EFCAMYDICGARSDRKVLNCPYNIP-SVKPDDLLSSKVQSLCPTITG---NVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1268)
Q Consensus 51 ~~C~~~g~C~~~~~~~~~~C~~~~~-~~~~~~~~~~~l~~~Cp~~~~---~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1268)
++|+|||.||+++.++.+||+++.| +++.......++++.||.+.. .+||++.|++.|++|+++|.++++|||+|.
T Consensus 1 ~~c~m~g~cg~~~~~~~~n~~~~~p~~~~~~~~~~~~~~~lc~~~~~~~~~~Cct~~Q~~~L~~~l~~a~~~l~rcP~c~ 80 (1201)
T KOG1933|consen 1 AYCAMYGKCGKNSGNAVLNCPLNEPTARPIISNAYYKIQKLCPGLPTGDFTLCCTASQLELLKLSLQQAGPLLSRCPSCF 80 (1201)
T ss_pred CeeEEEcccccCCCCCccCCccCCCccccccccHHHHHHHhccccccCCceeeecHHHHHHHHhhhhhhhhhhccCCccc
Confidence 5899999999998888999999998 666666667889999999864 599999999999999999999999999999
Q ss_pred hhHhhhccccccCCCCCcceEEEeecccCCCeeEEEEEEEEcchhchHHhhccccCccCCCChhHhhhcC--CCCCCHHH
Q 000819 127 RNFLNLFCELTCSPNQSLFINVTSVSKVSNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIG--GGAQNFKD 204 (1268)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~g--g~a~~~~~ 204 (1268)
+||.++||+||||||||.|++|+++... .|++++|+++.+|++++|+|||+|+|+++|++||++++ ++|+|+++
T Consensus 81 ~nf~~l~c~~tcspnqs~F~~v~~~~~~----~V~~ie~~~~~~fae~~y~sC~~v~~~~~~~~ai~~~~~g~~a~~~~~ 156 (1201)
T KOG1933|consen 81 DNFVNLFCHFTCSPNQSLFWNVTATAAY----KVQQIEYSLTDSFAEGLYESCKRVKFAAANGLAIRLMCLGKGAKNFEE 156 (1201)
T ss_pred ccchhhhhhcccCCCcCceEEeeccccc----eeeEEEEEEeehhhhhccccccccchhcccchhhhhhhcCCCchHHHH
Confidence 9999999999999999999999987532 29999999999999999999999999999999999885 36778999
Q ss_pred HHHhhcccCCCCCCCCceeEEecCCCCCCCCcccCCCCCcCCCCCC-CCccccCCCCCCCCCCCCCCCCCCCCceEeecC
Q 000819 205 WFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCADGS-LGCSCGDCTSSPVCSSTAPPPHKSSSCSVKMGS 283 (1268)
Q Consensus 205 ~l~flG~~~~~~~~~sPf~inf~~~~~~~~~~~~~~~~~~~C~~~~-~~CsC~dC~~~~sC~~~~~~~~~~~~c~~~~~~ 283 (1268)
|++|+|++++. .++||+|+|+.+.+.+..+.+||...++|++.. ++|+|+||++ +|+...+++.+.. ++.+|+
T Consensus 157 ~~~f~g~~~~~--~~~Pl~i~~~~~~~~~~~~~~~N~~~~~cd~~~v~~c~~~dc~~--~c~~~~~~~~~~~--~~~v~~ 230 (1201)
T KOG1933|consen 157 WLEFIGDKNPG--QSSPLRIEFLCSLPSPASIWYMNVEVKPCDDDTVPACSCSDCPE--TCPASLLLKSPTE--TFVVGG 230 (1201)
T ss_pred HHHHhcCCCcc--CCCcceeccccccCCccceeecccccccCCcccccccchhcchh--hcCccccCCCCcc--ceeecc
Confidence 99999999642 579999999987654445899999999999874 9999999999 9997666555444 456666
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccccCCCcccchhhhccccCcchhhhccCCCcccccchh
Q 000819 284 LNAKCVDFALAILYIILVSLFFGWGFFHRKRERSRSFRMKPLVNAMDGSELHSVERQKEENLPMQVQMLGTPRTRNRIQL 363 (1268)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (1268)
+..-+...+++++|.+++++|+.|......+.|.+..+..... +.++.. .
T Consensus 231 ~~~~~~~~~l~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~~~~--------------------------~~~~~~----~ 280 (1201)
T KOG1933|consen 231 IPGLSVFLILAFIFFAALLVFLGYSLKVLHRIRAKLGDDGTPV--------------------------DSSPTS----D 280 (1201)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHheeccccccccccCccc--------------------------cCCccc----c
Confidence 6433333466777777777777776554444332221110000 001000 1
Q ss_pred hhHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEE
Q 000819 364 SIVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEEL 443 (1268)
Q Consensus 364 ~~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqi 443 (1268)
.+++..++.+|++||.|+++||..++.+++.+.+.++.|+.+.+++|||+++|+.++|++|+|+++|+.|||||||+||+
T Consensus 281 ~~~~~~l~~~F~~~g~~~~~~P~~~~~~~~~~~i~~s~gli~~~v~T~pv~lW~~~~s~ar~ek~~fd~~fGpf~r~eqi 360 (1201)
T KOG1933|consen 281 FSTETFLEVFFRRWGTFCARNPLIVLYIILFVVIALSSGLIYFMVTTDPVDLWSLARSQARTEKSFFDTHFGPFYRTEQI 360 (1201)
T ss_pred hhHHHHHHHHhhhcccceecCchhhhHHHHHHHHHhccchhheeeeccchhhccCCcchhHHHHHHHhhhcCchhhhhhh
Confidence 25899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCC--CcccchhhhhhhcCCCCCC---
Q 000819 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ--DCATQSVLQYFKMDPKNFD--- 518 (1268)
Q Consensus 444 ii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~--~C~v~S~~~yf~~~~~~~~--- 518 (1268)
++++.+.++... +.+++.+.|++++++|+.++++.... .+++++|+|++|.++ .|.++|++||||+++..++
T Consensus 361 ~l~~~~~~~~~~-~~i~~~~~l~~vldiq~~v~~~~~~~--~~~~l~dic~~pi~~~~~c~i~s~~~YFq~~~~~~~~~~ 437 (1201)
T KOG1933|consen 361 ILTAVNTSSEVY-PPILLVEGLELVLDIQNSVKELLTSS--DNISLDDICYAPIGKNGACLIQSLTQYFQLSLSNLENKL 437 (1201)
T ss_pred eeeccCCccccC-CchHHHHHHHHHHHHHHHHHHhccCC--CccchheeeeeeccCCcchhhhhhHhhhccChhhhhccc
Confidence 999866544332 34999999999999999999987643 278999999999864 5889999999998876533
Q ss_pred -----CCCCcccccccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHH
Q 000819 519 -----DFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKA 593 (1268)
Q Consensus 519 -----~~~~~~~l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~ 593 (1268)
-+.|.+|+.+|.++|. .|+++||+|++|..++||++++++..|+++++||+++|+..... ..+.+.+||++
T Consensus 438 ~~~~~~~~~~~~~~~c~r~p~---~Cl~~f~~Pi~P~~~fgg~~~~~~~~a~~~~vTf~v~n~~~~~~-~~~~a~~We~~ 513 (1201)
T KOG1933|consen 438 NDSFFMDFWKNHLIDCIRNPL---SCLGTFGGPIDPILVFGGFSGKGYSLANALVVTFLVTNYYLAPE-LTDQAVAWEKA 513 (1201)
T ss_pred cccchhhHHHHHHHHHhhCch---hhhcccCCCCCchhhhcCCCccchhhceeEEEEEEEEeeccCcc-hhhHHHHHHHH
Confidence 1357889999998765 69999999999999999998777889999999999999876432 24889999999
Q ss_pred HHHHHHhhccccccCCCeE-EEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHH
Q 000819 594 FVQLAKDELLPMVQSKNLT-LAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSG 672 (1268)
Q Consensus 594 ~~~~~~~~~~~~~~~~~l~-v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~g 672 (1268)
|++.++++..+ .+. ++|++|+|+++|+++.+..|..+++++|++||+|+.+++++.+.+++++++||+.+|+.|
T Consensus 514 f~~~~~~~~~~-----~~~~~sf~aErsi~~ei~~~s~~D~~t~~isy~~mf~yi~~~Lg~~~~~r~vlidSkv~lgi~G 588 (1201)
T KOG1933|consen 514 FVNFAKDYLLP-----HLLAISFMAERSIEDEINRESEGDVITVVISYLVMFLYINLALGHYRSCRRVLIDSKVLLGISG 588 (1201)
T ss_pred HHHHHHHHhhh-----ccchheeeccCccchhhccCCcCCceEEEeehHHHHHHHHHHhccCcccceeeeeceeeccccc
Confidence 99999998753 333 899999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCC--CCHHHHHHHHHHhhhhHHHHHHH
Q 000819 673 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLE--LPLETRISNALVEVGPSITLASL 750 (1268)
Q Consensus 673 vl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~--~~~~~~i~~al~~~g~si~~tsl 750 (1268)
++++++++.+++|+++++|++.+.++.+|+||+++++|+|++|+++++|+|..+. .+.+++|.+++.++||+|+.+++
T Consensus 589 v~ivl~sv~~S~g~FS~~gi~~t~i~i~VipflVlavgvdnifilv~~~qr~~~~~~~~~~~~I~~~l~~~~Psil~~sl 668 (1201)
T KOG1933|consen 589 VLIVLLSVVCSVGFFSYLGITSTLIIIEVIPFLVLAVGVDNIFILVHTYQRDGRSKSEPLEQRIGSVLGEVGPSILLSSL 668 (1201)
T ss_pred eEEEeechhhhhhHHHhhcchhhheeeeeeeeEEEEEeeccEEEEEeeecccccccCCCcccccchhhhccCcHHHHhHH
Confidence 9999999999999999999999999999999999999999999999999987543 88999999999999999999999
Q ss_pred HHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCcccccch
Q 000819 751 SEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPG 830 (1268)
Q Consensus 751 t~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~ 830 (1268)
.+..+|+++++++||++|.|++++++++++++++|+|.|.|++++|.||++.+|+|++||+|.+++.. .++.+ +
T Consensus 669 se~~~ff~g~~~~mPav~~fal~a~lavLld~llq~t~fv~l~~~D~kR~~~~r~d~~~~~~~~~~~~-----~~~~~-~ 742 (1201)
T KOG1933|consen 669 SENFCFFLGAFVDMPAVRVFALYAGLAVLLDFLLQITAFVALIVLDAKRRLDNRIDIFCCVKPSEEES-----VRGNE-G 742 (1201)
T ss_pred HhhhHHhhhhcccCcceeeeHHHHHHHHHHHHHHHHhhhhhcccccchhhhcCCcceEeccccccccc-----ccccc-h
Confidence 99999999999999999999999999999999999999999999999999999999999998865411 11111 3
Q ss_pred hHHHHHH----------------------------HhhhccccCCccccccCCCchhhhHHHHHhhhccCCCCEEEEEec
Q 000819 831 LLARYMK----------------------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN 882 (1268)
Q Consensus 831 ~L~r~~k----------------------------~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g~pvy~Vv~~ 882 (1268)
.+.+++| ++.++|+.|+||++++|+|||+.+||++++++++.|||||+|+++
T Consensus 743 ~~~~ffk~~~ap~Ll~~~~ri~v~~~F~a~~~~s~~~~~rid~GldQ~la~pe~Syl~dyF~~~~e~l~~GPPvyfv~k~ 822 (1201)
T KOG1933|consen 743 LLTRFFKNVYAPFLLHKIVRIWVAIIFFALFFISLAGTPRIDFGLDQELAVPESSYLSDYFKNLNEFLNVGPPVYFVLKG 822 (1201)
T ss_pred hHHHHHHHHHHHHHhhccceeeeehhhhhhhhhhhcccccccccccceEeecccchhhhHhhhhhhhcccCCCEEEEecC
Confidence 3333322 356899999999999999999999999999999999999999995
Q ss_pred -CCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhccccccccc-ccCCCCCCCCCCCC
Q 000819 883 -YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCR-KFTNGSYCPPDDQP 960 (1268)
Q Consensus 883 -~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~~~~~cc~-~~~~~~~~~~~~~~ 960 (1268)
.+++++. .||++|++.+|+++|+.++|+.+.+.+|.+|+++|+.+|+|||++|+.|+. +||| +..++.|||++.++
T Consensus 823 ~~~~s~~~-~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~-~cCr~~~~~g~fc~~~~~~ 900 (1201)
T KOG1933|consen 823 GLDLSSPK-DQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQS-SCCRLKPDPGQFCPPSLND 900 (1201)
T ss_pred CCCCCChh-cccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccC-CccccCCCCCCcCCCCccc
Confidence 7888875 679999999999999999999999999999999999999999999999975 4999 77788999987543
Q ss_pred CCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCccccCCCCCCccccccccCCCCceEEEEE
Q 000819 961 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASS 1040 (1268)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~ 1040 (1268)
..|.+|..+.+....+|+.++|+++|++|+++.|+.+|++||+++|+.++++..+..+.|+|++
T Consensus 901 ----------------~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~ 964 (1201)
T KOG1933|consen 901 ----------------ERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASY 964 (1201)
T ss_pred ----------------ccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhh
Confidence 4688888555444568999999999999999999999999999999999998766666799999
Q ss_pred EEEEecccCchhhHHHHHHHHHHHHHhhcccC-CceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhh
Q 000819 1041 FRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL-QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT-CSF 1118 (1268)
Q Consensus 1041 f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~-~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~-~s~ 1118 (1268)
||+||+++.++.|++++++++|+++.++.+.+ +.++|||+++|+|+|||++|++.++.+++++++.||++..+++ .++
T Consensus 965 F~tyh~~l~ns~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~~ 1044 (1201)
T KOG1933|consen 965 FMTYHTPLSNSSDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLDV 1044 (1201)
T ss_pred hhhhccccccHHHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999987643 6889999999999999999999999999999999999988876 679
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccCC-CHHHHHHHHHHHHHHHHHHH
Q 000819 1119 WSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSG 1197 (1268)
Q Consensus 1119 ~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~~-~~~~r~~~al~~~g~~V~~g 1197 (1268)
+.+++..+++.+++++++|+|++|||++|++|++|++|++|++|||+.|+.|.|..+.+ ++.+|+.+++..+|.+++.|
T Consensus 1045 ~ss~i~~~~~~~~~v~l~g~m~~~~I~~NavS~vNlvm~vgi~vef~~hi~~sf~~s~~~~~~~ra~~~l~s~Gs~v~sg 1124 (1201)
T KOG1933|consen 1045 DSSLIMVLVDEMILVNLVGFMYLWGISLNAVSLVNLVMSVGIAVEFCVHITHSFATSSGPDATERAEEALNSIGSSVFSG 1124 (1201)
T ss_pred ccceeeeeehhhhhhhHHHHHHhhceeehhhhhhhhhhhcchhhhHHHHhhcceeeccCCchhHHHHHHHhccCcceecc
Confidence 99999999999999999999999999999999999999999999999999999998876 89999999999999999999
Q ss_pred HHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccchhh
Q 000819 1198 ITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE 1257 (1268)
Q Consensus 1198 ~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~~~~~ 1257 (1268)
+++|++.|+++|.|++++++++|||+|++..++++++||++|||++|+++|+..+.....
T Consensus 1125 itlt~~~~~~vl~fa~s~i~~~~~f~~~l~~~l~~a~hGliflpvlls~~g~~~~~~~~~ 1184 (1201)
T KOG1933|consen 1125 ITLTKFGGIIVLSFAKSQIFQVFYFRMYLGIVLVGALHGLIFLPVLLSLLGPESSRADSR 1184 (1201)
T ss_pred eeehhcCceEEEeeccccEEEEEeehHHHHHHHHHheeeeeehhhHHHhcCCccccchhh
Confidence 999999999999999999999999999999999999999999999999999988777744
No 3
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=100.00 E-value=7.5e-128 Score=1227.44 Aligned_cols=851 Identities=26% Similarity=0.448 Sum_probs=702.3
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCC-CceeEE
Q 000819 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPF-YRIEEL 443 (1268)
Q Consensus 365 ~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~-~r~eqi 443 (1268)
+++.+++++|++||.+|+|||+++|+++++++++|++|+.++++||||++||++|+|++++||+|||++|||| ||+||+
T Consensus 38 ~~~~~~q~~~~~~G~~~~~~p~~vl~~~~~~~~~~~~Gl~~~~ietdp~~LWv~~~sr~~~E~~y~~~~~gp~~~r~~Q~ 117 (1145)
T TIGR00918 38 WLRAKFQRLLFTLGCYIQKHCGKVLFVGLLVFSAFAVGLRAANIETNVEQLWVEVGGRVSQELAYTRQKIGEEAMFTPQL 117 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHCchhhhhHHHHHHHHHHhhHhheEEEecHHHhccCCCChHHHHHHHHHhccCCccCcceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccC-------------C--CCccc-----
Q 000819 444 ILATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPL-------------G--QDCAT----- 503 (1268)
Q Consensus 444 ii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~-------------~--~~C~v----- 503 (1268)
||+++++ +|.++|++|.|++++++|++++++++...+++++|+|+|+||. + ..|.+
T Consensus 118 ii~~~~~----~g~~vl~~~~L~~~~~~~~~i~~~~v~~~~~~~~l~diC~~p~~p~~~~~~~~~~~~~l~~C~iitpld 193 (1145)
T TIGR00918 118 LIQTPHQ----EGANVLTPEALLQHLDSALKASRVHVYLYNRQWGLEHLCYKSGEPSTEGGYIEQILEKLIPCLIITPLD 193 (1145)
T ss_pred EEECCCC----CCCCcCCHHHHHHHHHHHHHHHHhhccccCCccchhhhccCCCCcccccchhhhcccCCCCcEEecccc
Confidence 9998532 3546999999999999999999997655578999999999998 2 46999
Q ss_pred --------chhhhhhhcCCC----CCCCCC--------------Ccccccc-----------cccccCCccccccc----
Q 000819 504 --------QSVLQYFKMDPK----NFDDFG--------------GVEHVKY-----------CFQHYTSTESCMSA---- 542 (1268)
Q Consensus 504 --------~S~~~yf~~~~~----~~~~~~--------------~~~~l~~-----------~~~~~~s~~~cl~~---- 542 (1268)
+|+.+||+++.+ ++++.. |.+++++ |.+.+ + .+|+++
T Consensus 194 cfweg~kl~s~~~y~~~~~~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~~y~~~pC~~~~-d-~~C~~~apn~ 271 (1145)
T TIGR00918 194 CFWEGAKLQGGTAYLPGKPPLQWTNLDPASFLEELKQKMSQVESWEEMLKKAAVGQGYMERPCLNPA-D-PDCPDTAPNK 271 (1145)
T ss_pred hhhccccccCcccccCCCcccccccCCHHHHHHHhhhcccchHHHHHHHHHhcccccccCCCcCCCC-C-CCCCCccccc
Confidence 888888888766 555322 5566666 87543 2 469998
Q ss_pred -cCCCC--------------------CCCcccCCcc---cCcccceeEEEEEEEeec---------------cccccC-c
Q 000819 543 -FKGPL--------------------DPSTALGGFS---GNNYSEASAFVVTYPVNN---------------AVDREG-N 582 (1268)
Q Consensus 543 -~g~Pl--------------------~~~~~lGg~~---~~~~~~A~alvit~~l~n---------------~~~~~~-~ 582 (1268)
+|+|+ .|++++||++ ++++.+|+|+++||+++| +.+.++ +
T Consensus 272 ~~~~p~~~~~~l~ggc~g~~~~~m~w~~~lilGG~~~~~~~~i~~A~Al~~t~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 351 (1145)
T TIGR00918 272 NSTQPPDVAAVLSGGCYGLSAKYMHWQEELIVGGTKRNRSGKLLSAQALQSMFQLMTPKQMYEHFKGYYKVHHIGWNEEK 351 (1145)
T ss_pred ccCCCCcHHHHhcCccchhhhhhccCCcceEecccccCCCCCEeeeeeEEEEEEecChHHHHHHhhccccccccCcchhH
Confidence 99999 8899999987 457999999999999987 222111 1
Q ss_pred chHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccc
Q 000819 583 ETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYI 662 (1268)
Q Consensus 583 ~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v 662 (1268)
..+.+++||++|.+.+++.... .......+|+ ++|++||+++.++.++..++++|++|++|++++++++ +++
T Consensus 352 a~~va~~We~~F~~~v~~~~~~--~~~~~~~~fs-s~SL~del~~~s~~~~~~~~is~~lm~~Ya~~~l~~~-----d~v 423 (1145)
T TIGR00918 352 AAAVLEAWQRNFSEEVQQSLPK--NSSQKILVFS-STTLDDILKKFSDVSAIRIVSGYLLMLAYACLTMLRW-----DCA 423 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--ccCCceEEEe-cccHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccc-----hHh
Confidence 1244899999999999875421 1222344555 5999999999999999999999999999999999886 479
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhh
Q 000819 663 SSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVG 742 (1268)
Q Consensus 663 ~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g 742 (1268)
+||++||++|++++++|+++++|+++++|+++|+++++++|||+|||||||+|+|+|+|+++++..++++|++++++++|
T Consensus 424 ~sk~~Lgl~GVliv~lSv~~s~Gl~~~~Gi~fn~i~~~ViPFLvLgIGVDn~Fllv~~~~~t~~~~~v~~r~~~~l~~~g 503 (1145)
T TIGR00918 424 KSQGSVGLAGVLLVALSVAAGLGLCALLGISFNAATTQVLPFLALGVGVDDVFLLAHAFSETGQNIPFEERTGECLKRTG 503 (1145)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHhhhhHHHhhhhhcchhHHHHHHhhcCccCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999998789999999999999999999999998888999999999999999
Q ss_pred hHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccC--------
Q 000819 743 PSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLS-------- 814 (1268)
Q Consensus 743 ~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~-------- 814 (1268)
+||++|++|++++|++|++++||++|.||++++++++++|++|+|+|||+|+||.||++++|+|++||.+.+
T Consensus 504 ~SI~~tslt~~~aF~~ga~t~~Pavr~F~~~~a~av~~~~l~qit~F~AlLaLD~rR~~~~R~D~~cC~~~p~~~~~~~~ 583 (1145)
T TIGR00918 504 ASVVLTSISNVTAFFMAALIPIPALRAFSLQAAIVVVFNFAAVLLVFPAILSLDLRRREDRRLDIFCCFFSPCSARVIQI 583 (1145)
T ss_pred ceeeHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeeccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999997641
Q ss_pred --CCCcC-------------------------------------------------------CCCC-cc-----------
Q 000819 815 --SSYAD-------------------------------------------------------SDKG-IG----------- 825 (1268)
Q Consensus 815 --~~~~~-------------------------------------------------------~~~~-~~----------- 825 (1268)
....+ ..+. ..
T Consensus 584 ~p~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~ 663 (1145)
T TIGR00918 584 EPQAYADGSAPPVYSSHMQSTVQLRTEYDPGTQHYYTTNEPRSHLSVQPSDPLSCQSPDIAGSTRDLLSQFEDSKAACLS 663 (1145)
T ss_pred Cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00000 0000 00
Q ss_pred -cccchhHHHHHH----------------------------HhhhccccCCccccccCCCchhhhHHHHHhhhccCCCCE
Q 000819 826 -QRKPGLLARYMK----------------------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPL 876 (1268)
Q Consensus 826 -~~~~~~L~r~~k----------------------------~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g~pv 876 (1268)
...+..+.++++ +++++|+.||||++++|+|||+.+||+.+++||+. +|+
T Consensus 664 ~~~~~~~l~~f~~~~YaPfLl~~~vKv~VlliF~~~l~~si~g~~~i~~GLd~~~lvP~DSyl~~yf~~~~~yF~~-~~v 742 (1145)
T TIGR00918 664 LPCARWTLATFAEKHYAPFLLQSWAKVVVIFLFLALLGLSLYGTTRVQDGLDLTDIVPRDTNEHDFLDAQFRYFSF-YNM 742 (1145)
T ss_pred ccccchHHHHHHHHHhhHHHcCCCeeeEeehHHHHHHHHHHHhhhhhccCCCHHHhccCCCcHHHHHHHHHHhcCc-Cce
Confidence 000122333222 67899999999999999999999999999999998 799
Q ss_pred EEEEe-cCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCC-----CCCcHHHHHHhhcc-cc--cccccc
Q 000819 877 YFVVK-NYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP-----AASWLDDFLVWISP-EA--FGCCRK 947 (1268)
Q Consensus 877 y~Vv~-~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~-----~~sWlddf~~~l~~-~~--~~cc~~ 947 (1268)
|+|++ +.||.+. |+++ .++ .+++++.+++.++ +++|||||++|+++ +. ++||+.
T Consensus 743 y~V~~~~~dy~~~---q~~l------------~~l--~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~ 805 (1145)
T TIGR00918 743 YAVTQGNFDYPTQ---QQLL------------YDL--HQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRD 805 (1145)
T ss_pred EEEeCCCCCchHH---HHHH------------HHH--HHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhh
Confidence 99999 4898543 3332 122 2345667787766 47999999999997 22 468883
Q ss_pred --cCCCCCCCCCCCCCCCCCCCCCCCCCCcccC---CCccccc-CCc-CCCCCChhHHHhhHHHHHhcCCCccccCCCC-
Q 000819 948 --FTNGSYCPPDDQPPCCPSGQSSCGSAGVCKD---CTTCFHH-SDL-LKDRPSTIQFKEKLPWFLNALPSASCAKGGH- 1019 (1268)
Q Consensus 948 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---c~~c~~~-~~~-~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~- 1019 (1268)
..++.||++++....|. ....+.+ .++ +..+... +.. .+++|++++|++||+.|+++.|. +.+..
T Consensus 806 g~~~~~~~~n~s~~~~~~~---~l~~qtg-~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~---~y~~sq 878 (1145)
T TIGR00918 806 GRITKENYRNGSDDAVLAY---KLLVQTG-HRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPV---AYAASQ 878 (1145)
T ss_pred cccccccccCCccccchhh---hhccccc-ccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcc---hhhccc
Confidence 24556776654311000 0000000 000 0001000 011 25799999999999999987543 11110
Q ss_pred -------CCcccc-ccccCCCCceEEE------EEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeeh
Q 000819 1020 -------GAYTNS-VDLKGYENGIVQA------SSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMY 1085 (1268)
Q Consensus 1020 -------~~y~~~-v~~~~~~~~~I~a------s~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~ 1085 (1268)
..|..+ .++++. +..|.+ ++||+||+++++++|++++++++|+++++++ ..++++||||.+|+|
T Consensus 879 ~~~~p~~~~~~~~~~~~~~~-~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~-~~~~~vf~~g~~fvf 956 (1145)
T TIGR00918 879 ANIYPHPPEWLHDKNDYDPE-NLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYE-GFGLPSYPSGYPFLF 956 (1145)
T ss_pred ccccCCcchhcccccccccc-cccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhh-hcCceeccCCCceeH
Confidence 011111 111111 122444 4999999999999999999999999999987 468999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecce
Q 000819 1086 FEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFC 1165 (1268)
Q Consensus 1086 ~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfs 1165 (1268)
+|||.++...++.++++++++||+|++++++++++++++++++++++++++|+|++|||+||++|+++++|+||++||||
T Consensus 957 ~eQy~~i~~~~~~~l~~al~~~fvV~~lll~~~~~a~iv~l~v~~i~v~v~G~M~lwgI~LnaVS~vnLimsIGisVefs 1036 (1145)
T TIGR00918 957 WEQYMGLRHWLLLSISVVLACTFLVCALLLLNPWTAGLIVLVLALMTVELFGMMGLLGIKLSAIPVVILIASVGIGVEFT 1036 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeehhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1166 VHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1245 (1268)
Q Consensus 1166 iHi~~~f~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs 1245 (1268)
+||+|+|..+.++|++|+++||.++|+||++|+ +||++|+++|+|++++++..|||+|+++++++|++|||+|||++||
T Consensus 1037 aHI~~~F~~~~~~r~eR~~~AL~~~G~pVl~g~-lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVLLS 1115 (1145)
T TIGR00918 1037 VHIALGFLTAIGDRNRRAVLALEHMFAPVLDGA-LSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVLLS 1115 (1145)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999998 6999999999999998888888999999999999999999999999
Q ss_pred hhCCCCccchhh
Q 000819 1246 VFGPPSRCMLVE 1257 (1268)
Q Consensus 1246 ~~gp~~~~~~~~ 1257 (1268)
++||+.+....+
T Consensus 1116 ~~Gp~~~~~p~~ 1127 (1145)
T TIGR00918 1116 MFGPEPEVSPAE 1127 (1145)
T ss_pred hcCCccccCCCC
Confidence 999998877765
No 4
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=100.00 E-value=2.8e-92 Score=909.22 Aligned_cols=748 Identities=33% Similarity=0.570 Sum_probs=612.4
Q ss_pred hhccccceeccCCcccccCCCChHHHHHHh----hhccCCCCCceeEEEEEeccCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 000819 400 CLGLIRFEVETRPEKLWVGPGSRAAEEKLF----FDSHLAPFYRIEELILATIPDTTHGNLPSIVTESNIKLLFEIQKKI 475 (1268)
Q Consensus 400 ~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~----fd~~Fgp~~r~eqiii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I 475 (1268)
+.|+.++..+.|.. .|.|++++++.|... |.++..|..+.. ++.+.+ .++|+|+++.|+++.+++++|
T Consensus 2 ~~~~~~~~tp~d~~-~~~~~~~~s~~e~~~~~~Ff~~~~~~~~~~~--~i~a~~-----~~~nlL~~~~l~ei~~l~~~I 73 (798)
T PF02460_consen 2 SSDIEYLFTPDDIR-GYTERNSRSRREPEDSSEFFPSRGSPFRRFV--IIIAKD-----GGSNLLRPEYLDEILQLDDFI 73 (798)
T ss_pred CCCcceecCCCCcc-ccCCCcchhhhhhhhHhhccCCCCCCceEEE--EEEEec-----CCCCCcCHHHHHHHHHHHHHH
Confidence 45777888888866 899999999988654 444444444442 222211 133699999999999999999
Q ss_pred hh-hcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCcccccccccccCCccccccccCCCCCCCcccC
Q 000819 476 DG-LRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALG 554 (1268)
Q Consensus 476 ~~-i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~~~~~~~s~~~cl~~~g~Pl~~~~~lG 554 (1268)
.+ ++..+++++++++|+|.++-+..|..++.+++...+.. .+ ..-.+.+| +...+|.|++....+|
T Consensus 74 ~~~~~v~~~~~~~~~~dlC~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~ltyP---------~~~~~~~~~~l~~~~g 140 (798)
T PF02460_consen 74 MNNITVEDDGETITYKDLCAKYCDLNCPVNSFLNFELESNR-SN---DNINLTYP---------IMNIFGQPIFLGPNFG 140 (798)
T ss_pred HHhceeccCCeeeeccccCCCccCCCcchhHHHHHHHHhhc-cC---CceeecCC---------ccCCCCcccccCceec
Confidence 87 66666677899999999986678888888875221110 00 11123333 3345688888888889
Q ss_pred Cccc----CcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhc
Q 000819 555 GFSG----NNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKREST 630 (1268)
Q Consensus 555 g~~~----~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~ 630 (1268)
|++. +.+.+|++++++|.++... ++..+.+.+||+++.+.++++. ++.++++++.+++++++|+++.+.
T Consensus 141 gv~~~~~~~~i~~a~a~~l~y~l~~~~---~~~~~~~~~we~~~~~~~~~~~----~~~~i~~~~~s~~s~~~e~~~~~~ 213 (798)
T PF02460_consen 141 GVTTDPDNGNIESAKAVVLTYMLNTDD---EEQEEIAKAWERAFEDYLENYS----NSNNIQIYYFSSRSVDDELNRNSQ 213 (798)
T ss_pred CccccCCcchhheeEEEEEEEEccccc---chhhHHHHHHHHHHHHHHhhcc----ccCcEEEEEeeHHHHHHHHHHHHH
Confidence 8752 3578899999999998532 2356778999999999988753 234799999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcc
Q 000819 631 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (1268)
Q Consensus 631 ~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iG 710 (1268)
.+++.+.++|++|++|+.+.+.+.+....+|++||+++|++|++++++|+++++|++.++|++++. ++.++|||+||||
T Consensus 214 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~sk~~l~~~gv~~~~la~~~~~Gl~~~~G~~~~~-i~~v~PFLvlgIG 292 (798)
T PF02460_consen 214 TLVPLFAIGFALMFIFVVLSSSRFSSLSSDWVRSKPLLALAGVLSPLLAILASFGLLSLFGVPFNP-IVLVIPFLVLGIG 292 (798)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHcCccchh-hHHHHHHHHHHHH
Confidence 999999999999999999988765545567899999999999999999999999999999999998 5789999999999
Q ss_pred ccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 711 VDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFV 790 (1268)
Q Consensus 711 vd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fp 790 (1268)
|||+|+++++|+++....+++||++++++++||||++|++|++++|++|+++++|++|.||+|+|++|+++|++|+|+|+
T Consensus 293 vDd~Fi~~~~~~~~~~~~~~~er~~~~l~~~g~SitiTslT~~~aF~ig~~t~~pav~~Fc~~~a~av~f~~i~~it~f~ 372 (798)
T PF02460_consen 293 VDDMFIMIHAWRRTSPDLSVEERMAETLAEAGPSITITSLTNALAFAIGAITPIPAVRSFCIYAALAVLFDFIYQITFFP 372 (798)
T ss_pred HhceEEeHHHHhhhchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcccccCcccccccccCCCCcC-CCCC------cccc------------cchhHHHHHH--------------
Q 000819 791 ALIVFDFLRAEDKRVDCIPCLKLSSSYAD-SDKG------IGQR------------KPGLLARYMK-------------- 837 (1268)
Q Consensus 791 alL~l~~rr~~~~r~d~~~c~~~~~~~~~-~~~~------~~~~------------~~~~L~r~~k-------------- 837 (1268)
|+|++++||+..+|++++||.+..+.... ..+. .... .+.++.++.|
T Consensus 373 a~l~l~~~re~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~s 452 (798)
T PF02460_consen 373 AILVLDGRREAAGRHDCFCCIKKKESPSECSSESSEPSSPSEKSEPSLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVS 452 (798)
T ss_pred HHHHHHHHHHHhcccccccccchhhhhhhhccccccccccccchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999543211000 0000 0000 0111111112
Q ss_pred -HhhhccccCCccccccCCCchhhhHHHHHhhhc-cCCCCEEEEEec-CCCCchhHhhhhhhcccccCcchHHHHHHHhc
Q 000819 838 -ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHL-RIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRAS 914 (1268)
Q Consensus 838 -~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~-~~g~pvy~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~ 914 (1268)
+|+.+++.|+|+++++|+|||+.+|++.+++|+ +.|+|+++++++ .|+++++. |+++ .++.+++|+.
T Consensus 453 iyG~~~i~~gld~~~l~p~dSyl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~-~~~l--------~~lv~~fe~~- 522 (798)
T PF02460_consen 453 IYGCTQIKEGLDPEKLFPDDSYLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPEN-QDRL--------NSLVQEFENS- 522 (798)
T ss_pred HHhhcccCCCCChhhccCCCChhHHHHHHHHHHhhccCceEEEEecCCCCccchHH-HHHH--------HHHHHHHhcc-
Confidence 688999999999999999999999999998876 679999999985 79998764 4443 3566666543
Q ss_pred cCCCCccccCCCCCcHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCC
Q 000819 915 LIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPS 994 (1268)
Q Consensus 915 ~~~~~s~i~~~~~sWlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~ 994 (1268)
+ .+...+++.+||+||.+|+++.... .. + ..+
T Consensus 523 --~-~~~~~~~t~~WL~~y~~~l~~~~~~---------~~---~---------------------------------~~~ 554 (798)
T PF02460_consen 523 --P-YSIGNNSTSFWLRDYLNFLNSINSS---------FQ---D---------------------------------DND 554 (798)
T ss_pred --c-cccccccchhhHHHHHHHHhhcccc---------cc---c---------------------------------ccc
Confidence 1 2233345689999999999752100 00 0 000
Q ss_pred hhHHHhhHHHHHhcCCCccccCCCCCCcccccccc--CCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccC
Q 000819 995 TIQFKEKLPWFLNALPSASCAKGGHGAYTNSVDLK--GYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL 1072 (1268)
Q Consensus 995 ~~~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~--~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~ 1072 (1268)
.+.|+..+++|+..++ ...|..++.++ +.+++.|.++||++.++++.+.++..++++++|++++++++
T Consensus 555 ~~~~~~~l~~FL~~~~--------~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~-- 624 (798)
T PF02460_consen 555 KEFFYNLLPEFLNSPE--------YRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSD-- 624 (798)
T ss_pred ceeeeccchhhhcccc--------ccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhccee--
Confidence 1346778888997622 23577777765 33556799999999999999999999999999999998753
Q ss_pred CceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHH
Q 000819 1073 QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVV 1152 (1268)
Q Consensus 1073 ~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v 1152 (1268)
+++++|+..+.|+|||.++.+++++++++++++|++++++++++++.+++++++++++.++++|+|++||++||++|++
T Consensus 625 -~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~~~~~~~~~~i~~i~~~v~G~m~~~g~~l~~vs~v 703 (798)
T PF02460_consen 625 -FNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNPRSSLIVTLSILSIDVGVIGFMSLWGVDLDPVSMV 703 (798)
T ss_pred -cceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhccccCcchHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhceeecceeeeehhhhccCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Q 000819 1153 NLVMAVGIAVEFCVHITHAFSVSSG-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLL 1231 (1268)
Q Consensus 1153 ~l~iaiGi~VDfsiHi~~~f~~~~~-~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~ 1231 (1268)
+++|+||++|||++|++|+|..+.+ ++++|+++||+++|+||++|+ +||++|+++|+|++++++++| |+++++++++
T Consensus 704 ~l~~~iG~sVd~~~Hi~~~f~~~~~~~~~~r~~~al~~~g~pv~~~~-~st~l~~~~l~f~~~~~~~~f-f~~~~l~~~~ 781 (798)
T PF02460_consen 704 NLIMSIGFSVDFSAHIAYAFVHSQGSTRDERVAEALSSMGWPVLQGA-LSTFLGVLPLAFSPSYIFRVF-FKTVFLVIIF 781 (798)
T ss_pred HHHHHhchhhHHHHHHHHHheecccchHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999999999886 899999999999999999998 588999999999999999987 6777788999
Q ss_pred HHHHHHHHHHHHHhhh
Q 000819 1232 GFLHGLVFLPVVLSVF 1247 (1268)
Q Consensus 1232 ~~l~~Li~LPvlLs~~ 1247 (1268)
|++|||++||++|+++
T Consensus 782 ~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 782 GLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999987
No 5
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=100.00 E-value=6.1e-90 Score=858.76 Aligned_cols=782 Identities=24% Similarity=0.430 Sum_probs=646.4
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCC---cee
Q 000819 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFY---RIE 441 (1268)
Q Consensus 365 ~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~---r~e 441 (1268)
.+++.+.++|+++|.+++||||.+++++++++++++.|+..++.+.|+.++|.|.++++|.|.+.+.+.++-++ +..
T Consensus 4 ~~~r~~~~~f~~~g~~v~~~p~~~ii~~l~lt~~~s~g~~~~~~~~d~~~~ytP~~a~sr~E~~v~~e~~~~~~~g~~~~ 83 (868)
T KOG1934|consen 4 RLERILKVLFRKYGLFVARYPWFFIIIPLLLTAVLSVGILPLLTEDDARYLYTPSNARSRDERAVFKEFWPLFYPGRTIA 83 (868)
T ss_pred hHHHHHHHHHHHhCceeeecchHHHHHHHHHHHHHhcCchhheecCCcceeeCCCCCchHHHHHHHHhhccccCCCceeE
Confidence 57888999999999999999999999999999999999888889999999999999999999999999887543 222
Q ss_pred EE-EEEeccCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCC
Q 000819 442 EL-ILATIPDTTHGNLPSIVTESNIKLLFEIQKKID-GLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDD 519 (1268)
Q Consensus 442 qi-ii~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~-~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~ 519 (1268)
+. ++... +++|+++++.++++.++.+.|. +++.+.++...++.|+|.+.-+..|..+-.....+.+...
T Consensus 84 ~~~~~~~~------~~gniL~~~~l~e~~~i~~~i~~n~~~~~~~~~~~~~d~C~~~~~~~~~~~~~~~~~~~~~~~--- 154 (868)
T KOG1934|consen 84 IFRFIYLK------DGGNILRPEYLDEVLQIDDYISNNLTVDVDGRRITYKDFCMRNCDVNCFYNLLLILLKRLTIS--- 154 (868)
T ss_pred eEEEEEec------cCccccCHHHHHHHHHHHHHHHhheeeecCCceeehhhhhhcCCCcchhhHHHHHHhhcccCC---
Confidence 21 12211 3578999999999999999997 4666656777899999998656667766666555432211
Q ss_pred CCCcccccccccccCCccccccccCCCCCCCcccCCcc----cCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHH
Q 000819 520 FGGVEHVKYCFQHYTSTESCMSAFKGPLDPSTALGGFS----GNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFV 595 (1268)
Q Consensus 520 ~~~~~~l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~----~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~ 595 (1268)
+..-.+.+|. +..+|.|++....+||++ ++++.+|+++++.|.++-..+ +..+.+.+||+++.
T Consensus 155 -~~~~~lTYP~---------~~~~~~~~~l~~~f~GV~~~~~~~~i~sakav~L~y~~~~~~~---~~~~~~~~wE~~~~ 221 (868)
T KOG1934|consen 155 -RPQFNLTYPI---------TEVFGDKIYLGPNFGGVKLGPEDGRIKSAKAVVLYYRLELKTD---ETEQVAKEWERSLE 221 (868)
T ss_pred -CCceEEecCc---------cccCCCceecccccccceecCCCCceeEEEEEEEEEEeecCCc---chHHHHHHHHHHHH
Confidence 1112345553 344577887777888875 345788999999999985433 45688999999999
Q ss_pred HHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHH
Q 000819 596 QLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVL 675 (1268)
Q Consensus 596 ~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~ 675 (1268)
+.+.++. +++.+++++.+...+.+|+.|.+..-++.+.+++++|++|..+...+ .+|++||+++|++|+++
T Consensus 222 ~~~~~~~----~s~~I~~~~~s~~~~~~E~~r~~~~~~P~~~v~f~il~~F~~~t~~~-----~~~v~SKp~lai~g~l~ 292 (868)
T KOG1934|consen 222 DYFRLTY----NSSLISVYVFSSQTLDEELVRNGLTLVPFLSVGFAILVIFSILTSFM-----IDWVRSKPILAILGVLS 292 (868)
T ss_pred HHHHhcc----CCCceEEEEecHhHHHHHHHhhhheechHHHHHHHHHHHHHHHhhcc-----hhhhhhhHHHHHHHHHh
Confidence 9887764 34459999999999999999999999999999999999998887533 45899999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000819 676 VMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLA 755 (1268)
Q Consensus 676 v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~ 755 (1268)
.++|+++++|++.|+|.+++. +..++|||+|||||||+|+++++|+|+++..++++|++++++++||||++||+|.+++
T Consensus 293 p~mA~~ta~G~l~~~G~~f~s-I~~v~PFLvl~IGVDD~Flml~aW~rt~~~~~~~~Rm~~~laeag~SItITSlTn~ls 371 (868)
T KOG1934|consen 293 PVMAIITAFGLLFWCGFPFNS-IVCVMPFLVLGIGVDDAFLMLAAWRRTSKKLSVEERMAETLAEAGPSITITSLTNVLS 371 (868)
T ss_pred HHHHHHHHHHHHHHcCCCCcc-eeeecchheeeecccHHHHHHHHHHhcCccCCHHHHHHHHHHHhcCeeeHHHHHHHHH
Confidence 999999999999999999998 6889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCC-----cccccc-
Q 000819 756 FAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG-----IGQRKP- 829 (1268)
Q Consensus 756 F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~-----~~~~~~- 829 (1268)
|++|+++++|+||.||+++++|++++|++|+|||.|+|++.+||+.+++++.++|...+.+....... ....++
T Consensus 372 FgiG~~T~~p~v~~FC~~~a~Ai~f~fiYqlTFf~a~m~i~~~~E~~~~~~i~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 451 (868)
T KOG1934|consen 372 FGIGAITPTPAVQIFCLYTAVAILFDFIYQLTFFAAVMVITGRREANGRHSIFCEKTIDLEKTEEQKSSSSSSSSSLHNP 451 (868)
T ss_pred HHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhcccCceeeeccCCccccccccccCcccccccccc
Confidence 99999999999999999999999999999999999999999999999999877664443321110000 000111
Q ss_pred ----hhHHHHH--------H---------------HhhhccccCCccccccCCCchhhhHHHHHhhhcc-CCCCEEEEEe
Q 000819 830 ----GLLARYM--------K---------------ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLR-IGPPLYFVVK 881 (1268)
Q Consensus 830 ----~~L~r~~--------k---------------~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~-~g~pvy~Vv~ 881 (1268)
.++.+|. | +|+.+++.|+|+.+++|+|||+.++++..++++. .|.++.++|.
T Consensus 452 ~~~~~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~ 531 (868)
T KOG1934|consen 452 ILSRFFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKLLPEDSPLVKSLRLQEKYFWEYGQQVAVFVN 531 (868)
T ss_pred hHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHcccccCcchHHHHHHHHHhhccCceEEEEEc
Confidence 1111111 1 6899999999999999999999999999999885 5788999998
Q ss_pred c-CCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhcccccccccccCCCCCCCCCCCC
Q 000819 882 N-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQP 960 (1268)
Q Consensus 882 ~-~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~ 960 (1268)
+ +|+++++.+.+. +.+++.+|.. +.+...+.+.+||+||.+|.... +...-
T Consensus 532 np~dl~~~~~~~~~---------~~~~~~fE~~----~~~~G~~sT~~wlr~y~~~~~~~---------~~~~~------ 583 (868)
T KOG1934|consen 532 NPPDLSNPENRDNL---------NELVSEFEST----PYSMGRESTKFWLREYLNFLFEK---------NAELE------ 583 (868)
T ss_pred CCccCCCHHHHHHH---------HHHHHHHhcC----CcccCcccchhHHHHHHHHHhhh---------ccccc------
Confidence 5 899988655432 3455555543 22333445677999999985421 11100
Q ss_pred CCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHH-HHHhcCCCccccCCCCCCccccccccC--CCCceEE
Q 000819 961 PCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLP-WFLNALPSASCAKGGHGAYTNSVDLKG--YENGIVQ 1037 (1268)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~-~fl~~~p~~~c~~gg~~~y~~~v~~~~--~~~~~I~ 1037 (1268)
. ..++|+..+. +|+.. ++...|.+++.++. ++...+.
T Consensus 584 -------------------------------~-~~~~~~~~~~~~fl~~--------~~~~~~~~di~~~~~~~~~~~i~ 623 (868)
T KOG1934|consen 584 -------------------------------D-NDDEFYDHLYESFLKS--------PEFSFWRNDIVFDNKSDEETIIF 623 (868)
T ss_pred -------------------------------C-CCcchhhhhHHHHhcc--------cccccCccceEeccCCCCCceEE
Confidence 0 1234444443 45543 23346777877752 3456788
Q ss_pred EEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1038 ASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 1117 (1268)
Q Consensus 1038 as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s 1117 (1268)
++||.+..+++.+.+|..++++.+|+++++++ ++++.+|.+.+.|.|||.++...+++++++++++|++|+++++.+
T Consensus 624 ~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~---~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~ 700 (868)
T KOG1934|consen 624 AFRFTIGLTNLTKWNERTRLLETWRKIADEYS---DFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPN 700 (868)
T ss_pred EEEEEEEEeccCCHHHHHHHHHHHHHHHhhcc---CCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999874 577888899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccCC--CHHHHHHHHHHHHHHHHH
Q 000819 1118 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGASVF 1195 (1268)
Q Consensus 1118 ~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~~--~~~~r~~~al~~~g~~V~ 1195 (1268)
+..+++++++++++.++++|+|.+||++||++||+.++|+||++|||++|++++|..+++ ++.+|++.||+.+|+||+
T Consensus 701 ~~~~~~it~si~SI~~GV~G~lslW~V~LDpISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~ 780 (868)
T KOG1934|consen 701 PLCVFWITLSIVSINIGVFGFLSLWGVDLDPISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVL 780 (868)
T ss_pred hHHHHHHHHHHhheeehHhhhhHHhcCCccHHHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999998886 899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1196 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1196 ~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
+|+ ++|++|+++|+|.+++++++| |+++++++++|++|||+|||++|+.+.+..
T Consensus 781 Qa~-lSTiL~v~pL~~V~sYmv~vF-~KTv~LVv~~GllHGLv~LPviLs~f~~~~ 834 (868)
T KOG1934|consen 781 QAG-LSTILGVLPLLFVPSYMVQVF-FKTVVLVVTLGLLHGLVFLPVILSLFPPIK 834 (868)
T ss_pred hhh-hHHHHHHHHHHhchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 998 599999999999999999999 688888999999999999999999998643
No 6
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-74 Score=669.95 Aligned_cols=853 Identities=26% Similarity=0.410 Sum_probs=640.6
Q ss_pred hHHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEE
Q 000819 365 IVQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELI 444 (1268)
Q Consensus 365 ~~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqii 444 (1268)
+...++++++.++|.++.||-|.+|.+++++...|++|+...++|||.++||+..+++..+|.+|-.+--....-+.|++
T Consensus 54 ~lRa~fQ~lLf~lGc~vqr~agkvlfv~~lif~~~~~GLr~a~IeT~~~qLWV~~GgRl~~El~yt~~lgee~~~~~Q~l 133 (1143)
T KOG1935|consen 54 YLRAFFQLLLFRLGCFVQRHAGKVLFVGLLIFGAFCVGLRHATIETDLVQLWVEEGGRLSEELNYTPELGEENGLTGQLL 133 (1143)
T ss_pred HHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHHHhhhhheeeeccHHHHHHHhccchhHhhccccccchhcCCCceeE
Confidence 68889999999999999999999999999999999999999999999999999999999999999743322223345899
Q ss_pred EEeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCC---------------Ccccchhhhh
Q 000819 445 LATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQ---------------DCATQSVLQY 509 (1268)
Q Consensus 445 i~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~---------------~C~v~S~~~y 509 (1268)
|++.. .+|.|+|+++.|..-.++..++....+..-++.+++.|||+||.+. .|.+..|++.
T Consensus 134 IQTp~----~eg~niL~~eaLl~Hle~~~~as~v~V~ly~~~W~L~diC~kp~~ps~e~g~i~~ii~kliPCiiITPlDC 209 (1143)
T KOG1935|consen 134 IQTPS----FEGANILTPEALLQHLELMLEASTVEVSLYNETWTLSDICFKPGGPSFESGYIEQILDKLIPCIIITPLDC 209 (1143)
T ss_pred EECCC----cCCcccCChHHHHHHHHHHHhhheeEEEEecCcccHhHhhcCCCCCccccchHHHHHHHhcCeeEecchhh
Confidence 98753 3467899999999999988888877665557899999999998641 6888888865
Q ss_pred hh-cCC----------------CCCCCCCCcccc------------------------cccccccCCccccccc-----c
Q 000819 510 FK-MDP----------------KNFDDFGGVEHV------------------------KYCFQHYTSTESCMSA-----F 543 (1268)
Q Consensus 510 f~-~~~----------------~~~~~~~~~~~l------------------------~~~~~~~~s~~~cl~~-----~ 543 (1268)
|. +.. .++|+..-.+++ +-|++ |.. .+|-++ +
T Consensus 210 fWeGakllgp~a~~~g~p~l~Wtnl~P~~vi~e~~~~f~l~~~~~~~~rA~ig~gYmdrPCl~-Pld-p~CP~sApn~~s 287 (1143)
T KOG1935|consen 210 FWEGAKLLGPNAYLPGLPPLRWTNLNPTSVIEELGTLFDLESIEEFFERAGIGHGYMDRPCLN-PLD-PECPPSAPNKNS 287 (1143)
T ss_pred hcccccccCcceeccCCCCcccccCCHHHHHHHHhhhcCcchHHHHHHHhccCccccCCCCCC-CCC-CCCCCCCccccC
Confidence 43 210 011110000000 12221 111 123222 1
Q ss_pred CCCCCC--------------------CcccCCccc---CcccceeEEEEEEEeeccc----------------cccCcch
Q 000819 544 KGPLDP--------------------STALGGFSG---NNYSEASAFVVTYPVNNAV----------------DREGNET 584 (1268)
Q Consensus 544 g~Pl~~--------------------~~~lGg~~~---~~~~~A~alvit~~l~n~~----------------~~~~~~~ 584 (1268)
-+|.+. .+++||... ++...|+|++.+|++-... ..+....
T Consensus 288 ~q~pd~a~~ltGGC~Gfa~k~mhWpEelIlGg~~R~~~GkL~~A~ALQsvfllmsp~~~y~~fk~~~~~~h~gw~~~~a~ 367 (1143)
T KOG1935|consen 288 PQPPDYAAELTGGCHGFASKVMHWPEELILGGPRRDKKGKLVSAEALQSVFLLMSPKDVYERFKGDYTVHHLGWNEEKAA 367 (1143)
T ss_pred CCCCCHHHHhcCCcchhhhhhcCCcHHHhcCCcccCCCCccchHHHHHHHHHhcCHHHHHHHHhCCccccCCCCcHHHHH
Confidence 122221 134455432 2356777877666552110 0001123
Q ss_pred HHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccc
Q 000819 585 KKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISS 664 (1268)
Q Consensus 585 ~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~S 664 (1268)
+...+|.+.|.+.+.+.+. .+.-+++-.+..++.|-+++-+.-....++++|++|.+|..+++.|| ++.++|
T Consensus 368 ~vl~awQrnf~~~~~~~~~----~~~~~ih~fsStsldDiL~~Fs~~s~~~iv~gy~lm~~ya~~t~lr~----~~~~~s 439 (1143)
T KOG1935|consen 368 EVLQAWQRNFTKRVYQHLA----NERRQIHPFSSTSLDDILEEFSQFSAISIVIGYLLMVAYACLTQLRW----WDAVQS 439 (1143)
T ss_pred HHHHHHHHHHHHHHHHHhh----hhcceecccccccHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHh----hhhhcc
Confidence 5568899999988876653 25667777788899999999998888899999999999999999884 246899
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhH
Q 000819 665 KVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPS 744 (1268)
Q Consensus 665 k~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~s 744 (1268)
...+|++||+.+.+|+++++|+..++||.+|.-++.|+|||.||+||||+|.+.|+|++..+. +++++.-|+++|+|
T Consensus 440 q~~vglaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~---~~~~~~~lk~tG~S 516 (1143)
T KOG1935|consen 440 QGSVGLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL---HEEMGELLKETGMS 516 (1143)
T ss_pred ccchhhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh---HHHHHHHHHHhCcc
Confidence 999999999999999999999999999999998999999999999999999999999987654 89999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcC-----
Q 000819 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYAD----- 819 (1268)
Q Consensus 745 i~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~----- 819 (1268)
|++||+.++.+|+.+++.|+|+.|.||+.+|+-+.++|+..++.|||++++|.||++.+|.|++||....+....
T Consensus 517 vl~tsinni~aF~~aallPIPALrsFclQaaIvl~fnfia~llifPAiisiDLrRr~~~r~Di~cc~~~~p~~~~~~~~p 596 (1143)
T KOG1935|consen 517 VLLTSINNILAFLMAALLPIPALRSFCLQAAIVLTFNFIAVLLIFPAIISIDLRRRKAGRRDIFCCFRGNPEMATSQSVP 596 (1143)
T ss_pred hhHHHhhhHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccccceeEeccCCcccCcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999874321100
Q ss_pred ------C-----C--CC-----ccc---c-------------cchhHHHHHH---------------HhhhccccCCccc
Q 000819 820 ------S-----D--KG-----IGQ---R-------------KPGLLARYMK---------------ALCTRIEPGLEQK 850 (1268)
Q Consensus 820 ------~-----~--~~-----~~~---~-------------~~~~L~r~~k---------------~~~~~I~~gldq~ 850 (1268)
. . .+ .+. . .|.+++...| ++.++.+.|||..
T Consensus 597 ~~v~~~~~~s~~~~~~g~tr~~~~~~~~~a~wsl~~Fa~~~y~Pfl~k~~~K~~vivg~~allg~slyg~t~~~~GLel~ 676 (1143)
T KOG1935|consen 597 SNVSNNTLASIMQEPDGSTRALLAQSSHSAPWSLASFARYHYIPFLLKPAVKVAVIVGFLALLGASLYGMTRSTDGLELT 676 (1143)
T ss_pred cccCCCcccccccCCCcchhhhhccCCCCCCccHHHHHHHHhhHHhhcchhHhHHHHHHHHHHHhhhhheeeecccchhh
Confidence 0 0 00 000 0 1111111122 5778999999999
Q ss_pred cccCCCchhhhHHHHHhhhccCCCCEEEEEec-CCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCC----
Q 000819 851 IVLPRDSYLQGYFNNISEHLRIGPPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKP---- 925 (1268)
Q Consensus 851 ~~lP~dSyl~~yf~~~~~~~~~g~pvy~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~---- 925 (1268)
+.+|+++.-.++.++.++||+. .|||.|+++ .||.+. |+.+ +.+-+. .....|+.++
T Consensus 677 DvvP~~t~~~~FL~Aq~kyFsf-Y~m~aVtqg~~dyp~q---Q~ll--------~dyh~s------f~s~k~vik~~n~~ 738 (1143)
T KOG1935|consen 677 DVVPEHTAEAAFLRAQDKYFSF-YPMFAVTQGPFDYPHQ---QQLL--------DDYHQS------FGSSKYVIKNENEQ 738 (1143)
T ss_pred hcCCCCCcHHHHHHHHhhhccc-chhheeecCCCCcccH---HHHH--------HHHHHH------hccCceeecCCCCC
Confidence 9999999999999999999985 599999995 788653 2222 112222 2233444432
Q ss_pred -CCCcHHHHHHhhcccccccccccCCCCC-----CC-CCCCCCCCCCCCCCCCCCCcccCCCccccc-CCcCCCCCChhH
Q 000819 926 -AASWLDDFLVWISPEAFGCCRKFTNGSY-----CP-PDDQPPCCPSGQSSCGSAGVCKDCTTCFHH-SDLLKDRPSTIQ 997 (1268)
Q Consensus 926 -~~sWlddf~~~l~~~~~~cc~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~-~~~~~~~P~~~~ 997 (1268)
...||.-|.+|+......-.....++.+ .+ ..++. .+.+....+++...+|..-... +..+.++-.++.
T Consensus 739 l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~S~d~---~lA~kL~~qtG~~~~~~~~l~k~rlVd~giInp~~ 815 (1143)
T KOG1935|consen 739 LPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNGSEDA---RLAYKLLCQTGSLDNDAGRLGKIRLVDAGIINPEA 815 (1143)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCChHH---HHHHHHHHhcCCccchhHhhhhhhhhhccccCHHH
Confidence 2469999999986421000000011111 11 11100 0000011112222233222211 112346666899
Q ss_pred HHhhHHHHHhcCCCccccC-C----CCCCccccccccC--CCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcc
Q 000819 998 FKEKLPWFLNALPSASCAK-G----GHGAYTNSVDLKG--YENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSD 1070 (1268)
Q Consensus 998 F~~~L~~fl~~~p~~~c~~-g----g~~~y~~~v~~~~--~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~ 1070 (1268)
||.||..|.+..|-.--+. + -+..|..+-++.+ .....+.-+.|..|.+.+.+..|++++++.+|..+.+++
T Consensus 816 FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~~~~~~~iP~aePl~yaQmPFyL~gL~dTa~Ivk~I~~iR~~c~~~~- 894 (1143)
T KOG1935|consen 816 FYNYLTAWFNNDPMAYYASQASFYPTPPEWEHDNDYAKEIPAAEPLEYAQMPFYLNGLTDTADIVKAIESIRASCEEYT- 894 (1143)
T ss_pred HHHhhhhhcccchHHhhhhccCCCCCCccccccccccccccccccchhccCchHHhhhhhHHHHHHHHHHHHHHHhhcc-
Confidence 9999988876433100000 0 0011222211100 011234445677788889999999999999999999998
Q ss_pred cCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHH
Q 000819 1071 SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVS 1150 (1268)
Q Consensus 1071 ~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS 1150 (1268)
..|..-||-|+.++|+|||.++..+.+..+.+-++.+|.++.+++.+.|++.+++..+.+..+.++|+|++.||+||+++
T Consensus 895 s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~npWaA~Liv~sL~~mt~eL~G~Mgl~GIKlS~i~ 974 (1143)
T KOG1935|consen 895 SLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLLNPWAAGLIVCSLAIMTVELFGFMGLLGIKLSAIP 974 (1143)
T ss_pred cCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHhhceeeccch
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhceeecceeeeehhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH
Q 000819 1151 VVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVL 1230 (1268)
Q Consensus 1151 ~v~l~iaiGi~VDfsiHi~~~f~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~ 1230 (1268)
.|.++.+||++|+|++|+.-.|..+.+++..|+..|+..+..|+..|+ +++.+|+++|.++....+..|||..+.+++.
T Consensus 975 aViLi~sVGigveFtvhv~l~FlTs~G~rs~R~s~al~~~F~Pv~hG~-lST~lgv~MLs~S~FdFvVryFf~~ltvl~~ 1053 (1143)
T KOG1935|consen 975 AVILIASVGIGVEFTVHVALGFLTALGTRSQRASSALQHMFVPVSHGA-LSTLLGVLMLSFSEFDFVVRYFFAVLTVLTC 1053 (1143)
T ss_pred hHHHHHHhhhchhhhHHHHHHHHHhhccchhHhHHhhhhcchhhhhhH-HHHHhhHheeccCchhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 6999999999999999888888988888999
Q ss_pred HHHHHHHHHHHHHHhhhCCCCccchhh
Q 000819 1231 LGFLHGLVFLPVVLSVFGPPSRCMLVE 1257 (1268)
Q Consensus 1231 ~~~l~~Li~LPvlLs~~gp~~~~~~~~ 1257 (1268)
+|.++||++||||||++||+++....+
T Consensus 1054 lGv~ngL~~lPVlLS~~GP~pEl~p~~ 1080 (1143)
T KOG1935|consen 1054 LGVLNGLVVLPVLLSLVGPKPELSPTD 1080 (1143)
T ss_pred HHHhccchHHHHHHHhcCCCcccccCC
Confidence 999999999999999999988766654
No 7
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=100.00 E-value=2.6e-58 Score=563.94 Aligned_cols=705 Identities=15% Similarity=0.228 Sum_probs=507.9
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEeccCCCC
Q 000819 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTH 453 (1268)
Q Consensus 374 f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~~~~~~ 453 (1268)
|.++++|+.+||+.++++.+++++++++|+.+++++++-. .+.|++++..+.++.++++|| ...+.+.+..+
T Consensus 2 ~~kl~~fi~~~r~~i~~~~~~l~i~~~~~a~~l~~~s~~~-~~~~~d~~~~k~y~~~~~~f~--~~~~~i~v~ie----- 73 (727)
T COG1033 2 FEKLARFIIRRRKSIILIFLLLTILSAFGAQNLEFDSGTE-TFLPKDNEEYKNYDRLYKEFG--SGTSLIVVVIE----- 73 (727)
T ss_pred hHHHHHHHHhCccHHHHHHHHHHHHHHHhhheeeecCCcc-ccCCCchHHHHHHHHHHHhhC--CCCceEEEEEe-----
Confidence 7899999999999999999999999999999999999944 568999999999999999998 33345555432
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcC-CCCCCCCCCcccccccccc
Q 000819 454 GNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMD-PKNFDDFGGVEHVKYCFQH 532 (1268)
Q Consensus 454 ~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~-~~~~~~~~~~~~l~~~~~~ 532 (1268)
+.++++++.++.+.++++++++++.. .++ .||..++... ...+.+. .+.+..-.+
T Consensus 74 --~~dv~~~e~~~~~~~l~~~l~~i~gV--~~v-----------------~Spa~~~~~~~~g~iP~~--~~~i~~~~~- 129 (727)
T COG1033 74 --GDDVFSPEVLEALDSLEERLEEIPGV--SSV-----------------FSPADLLRQVGYGRIPDS--DSKISEVIE- 129 (727)
T ss_pred --CCCCCCHHHHHHHHHHHHHHhcCCCc--eec-----------------cCHHHHhhhccCCCCCCc--hhhhHHHHh-
Confidence 34599999999999999999987531 222 2444444332 1112111 001111000
Q ss_pred cCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccCCCeE
Q 000819 533 YTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLT 612 (1268)
Q Consensus 533 ~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~ 612 (1268)
. .... ..+ ++.. .++...+... .+.. .++..+..++..+....+++.+
T Consensus 130 ------------~---~~~l---~~d----~~~~-~i~i~~~~~~------~~~~---~~~i~~~~~~~~e~~~~~~~~~ 177 (727)
T COG1033 130 ------------S---NSLL---SPD----NTHT-LIIIKLESDK------NDAQ---KEEIYEEIERIIEIAKFPSGVK 177 (727)
T ss_pred ------------h---hccc---CCc----ccce-EEEEecCcch------hhHH---HHHHHHhhhhhhhhhcCCCCCe
Confidence 0 0000 001 1112 2333333211 1111 1112222222211111356889
Q ss_pred EEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhc
Q 000819 613 LAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIG 691 (1268)
Q Consensus 613 v~f~~~~sl~del~~~s~~d~~~~-~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~G 691 (1268)
.+.+|+..+.+.+.+....|+..+ .++.++|++.+.+.++++ ..++++++++++|++|++|+|+|+|
T Consensus 178 ~~ltG~~~~~~~i~~~~~~d~~~l~~l~~~l~vivL~~~fr~~------------~~~llpL~~~l~sv~~tlG~m~llG 245 (727)
T COG1033 178 LYLTGDPAIRYQILREIQKDMVVLLALAVILMVIVLYYVFRSV------------RRALLPLIIVLVSVLWTLGAMGLLG 245 (727)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999998864 567777777777777664 2369999999999999999999999
Q ss_pred cccchhhhhHHHHHhhhccccceehHHHHHHHhc-CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHH
Q 000819 692 VKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVF 770 (1268)
Q Consensus 692 i~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~-~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F 770 (1268)
+|++. ++..+|.+++|+|+||++|+++||.+++ .+.++++|+.+|++++|+|++++.+||++||+++.++.+|++|+|
T Consensus 246 ~plt~-~s~~~~~llIgiGidy~vh~~nr~~ee~~~~~~~~eAv~~ai~~~g~avl~a~lTT~~GF~Sl~~s~i~~i~~~ 324 (727)
T COG1033 246 IPLTI-TTSAVPPLLIGIGIDYGVHFHNRYEEERRKGRTVEEAVVEAIKHTGPAVLIAALTTAAGFLSLLTSSIPAIKEF 324 (727)
T ss_pred CCchh-HHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 99997 7889999999999999999999999975 568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCC-------cccccch-hH------HHHH
Q 000819 771 SMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKG-------IGQRKPG-LL------ARYM 836 (1268)
Q Consensus 771 ~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~-------~~~~~~~-~L------~r~~ 836 (1268)
|+.+.+|++.+++..+++.|+++.+..+..++ |.+.+.+.....+. ...+.+. .| .-+.
T Consensus 325 Gi~~siGi~la~l~sl~~lp~ll~~~~~~~~~-------~~~~k~~~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~ 397 (727)
T COG1033 325 GILLSIGIILAFLSSLTVLPALLILIPKGRKK-------REEKKDSKKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVS 397 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHhhhh-------hhhcccccchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999988776544320 00111000000000 0000000 00 0011
Q ss_pred HHhhhccccCCccccccCCCchhhhHHHHHhhhccCCCCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccC
Q 000819 837 KALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLI 916 (1268)
Q Consensus 837 k~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~ 916 (1268)
.++..+++.++|.++++|+|++..+.++.+++.+++..|++++++..|..||+..+.. +.+.+.+++.+.+
T Consensus 398 ~yg~~~v~~~~d~~k~~p~d~p~~~~~~~i~~~~ggs~~~~i~~~~~d~~dp~~l~~m---------d~l~~~l~~~~~~ 468 (727)
T COG1033 398 LYGASKVKIETDIEKYLPQDLPALKALDFIEKEFGGSDPITIVLEAEDVRDPEVLRWM---------DELEEELEKGEEH 468 (727)
T ss_pred HhhhhhcccccchHhhcCCCcHHHHHHHHHHHHcCCCceEEEEEECCCCCChHHHHHH---------HHHHHHHHhccee
Confidence 2678999999999999999999999999999999999999999997666777644321 3444444433211
Q ss_pred CCCccccCCCCCcHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChh
Q 000819 917 PQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTI 996 (1268)
Q Consensus 917 ~~~s~i~~~~~sWlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~ 996 (1268)
+. . .+.+-|..+..+. ...|+..
T Consensus 469 -----V~-s-~~siv~~vk~~~~--------------------------------------------------~~~p~~~ 491 (727)
T COG1033 469 -----VF-S-ASSIVDLVKQVNG--------------------------------------------------GIIPDKS 491 (727)
T ss_pred -----ee-c-cchHHHHHHHHhc--------------------------------------------------CCCCcch
Confidence 11 1 1224444433321 0112222
Q ss_pred HHHhhHHHHHhcCCCccccCCCCCCccccccccCCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCcee
Q 000819 997 QFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEI 1076 (1268)
Q Consensus 997 ~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v 1076 (1268)
+ +..-++..|+.. ++ .-|+.. ....... ....++.|+....++..+-.++...+.|+++
T Consensus 492 ~----~~~i~~~~~~~~--~~--~~~s~~--------~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~gv~~ 550 (727)
T COG1033 492 K----IQIILEELPESI--KK--RYISGD--------QLNLLGY-----SLGDTQGELEDVGREILRDIEKENIPTGVKV 550 (727)
T ss_pred h----HHHHHHhcchhH--hh--cccCCC--------ceeeeec-----ccccchhHHHHHHHHHHHHHHhhcCCCCcEE
Confidence 2 112222223210 00 011110 0011111 1123455665555444443334344578889
Q ss_pred eeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q 000819 1077 FPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 1156 (1268)
Q Consensus 1077 ~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~i 1156 (1268)
..+|..+++.+..+.+.+++..+..+++++|++++++.+||+..++++++|+.+++.|.+|+|+++||++|+.|+....|
T Consensus 551 ~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~~~~i~~iipi~~~v~~~~~~M~l~gI~~~~~ta~v~ai 630 (727)
T COG1033 551 YVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSPLKAIIPLIPIAIVVGWNFGLMGLLGIPLTPATATLGAI 630 (727)
T ss_pred EEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceeecceeeeehhhhccCC-C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 000819 1157 AVGIAVEFCVHITHAFSVSSG-D-KNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFL 1234 (1268)
Q Consensus 1157 aiGi~VDfsiHi~~~f~~~~~-~-~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l 1234 (1268)
.+|++|||+||+++||+++++ . +++++.+|++++|++|+.++ +|+.+||++|.||+.+++..| +.+....++++++
T Consensus 631 ~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~-ltt~~GF~aLi~S~f~i~snf-Gll~~~~il~sl~ 708 (727)
T COG1033 631 ILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASA-LTTAIGFLALIFSPFPIISNF-GLLTVIGILLSLL 708 (727)
T ss_pred hhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHH-HHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999998864 3 89999999999999999998 699999999999999999988 4555678999999
Q ss_pred HHHHHHHHHHhhhCCCC
Q 000819 1235 HGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1235 ~~Li~LPvlLs~~gp~~ 1251 (1268)
.+|+++|++|-++.++.
T Consensus 709 asl~~lPall~~~~~~~ 725 (727)
T COG1033 709 ASLVLLPALLVLLDGRR 725 (727)
T ss_pred HHHHHhHHHHHHhhccc
Confidence 99999999999886653
No 8
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=100.00 E-value=9.3e-52 Score=530.56 Aligned_cols=690 Identities=13% Similarity=0.134 Sum_probs=476.9
Q ss_pred ccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEeccCCCCCCCCCCCCH
Q 000819 383 RNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVTE 462 (1268)
Q Consensus 383 r~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~~~~~~~~g~~vl~~ 462 (1268)
||||.++++.+++++++.+|+.++++++|+. .|.|+|++.++..+.++++||.. ..++.+..+ +++++++
T Consensus 2 ~~~~~v~~~~~~l~~~~~~g~~~l~~~~~~~-~~~~~d~~~~~~~~~~~~~fg~~--~~~~~v~v~-------~~~~~~~ 71 (719)
T TIGR00921 2 RFRTAIILVFLALLILSAYGAQHLNVESDTE-KQLPKDFESYKWYHVLQREFGTS--TKTLLVVIE-------GDDVTRK 71 (719)
T ss_pred CCchhhHHHHHHHHHHHHHhcccceeccChh-hhCCCCCHHHHHHHHHHHHHCCC--CeEEEEEEE-------eCCCCCH
Confidence 7999999999999999999999999999986 56799999999999999999832 223333221 2359999
Q ss_pred HHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCC--CCCCCCCcccccccccccCCccccc
Q 000819 463 SNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPK--NFDDFGGVEHVKYCFQHYTSTESCM 540 (1268)
Q Consensus 463 e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~--~~~~~~~~~~l~~~~~~~~s~~~cl 540 (1268)
+.++++.++++++++++. .++..+ +.++...-.. .+.++ .+.++.-.+. .
T Consensus 72 ~~l~~i~~l~~~l~~~~~--V~~v~s-----------------~~~~~~~~~~~~~~p~~--~~~~~~~~~~-------~ 123 (719)
T TIGR00921 72 PVLDYMRRLEQRLREKPY--VTNVRS-----------------AADIMRQIPGNFPLPVT--MPEVRPLMSE-------Y 123 (719)
T ss_pred HHHHHHHHHHHHHhcCCC--cceeec-----------------HHHHHHHhcCCCcCCCC--HHHHHHHHHh-------C
Confidence 999999999999987642 222223 3322211000 01100 0111110000 0
Q ss_pred cccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchh
Q 000819 541 SAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESS 620 (1268)
Q Consensus 541 ~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~~~s 620 (1268)
|.... .+-+. +.+...+...+++..+ .+...+-.+++.+.++++ ..+++++++++|...
T Consensus 124 -----~~~~~----~~~s~---d~~~~~i~v~~~~~~~-----~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~G~~~ 182 (719)
T TIGR00921 124 -----PRSKE----MFLSK---DHTVAIIIVQLKSDAD-----YKQVVPIYNDVERSLERT----NPPSGKFLDVTGSPA 182 (719)
T ss_pred -----cHHHH----hccCC---CCceEEEEEEecCCCC-----hHHHHHHHHHHHHHHhcc----CCCCCcEEEecCcHH
Confidence 10000 01111 1223334444443211 111111112233333322 124578999999988
Q ss_pred HHHHHHhhhchhhHH-HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhh
Q 000819 621 IEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIM 699 (1268)
Q Consensus 621 l~del~~~s~~d~~~-~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~ 699 (1268)
+..++.+....|... +.++.+++++.+.+.+|++ ..++++++++++++++++|+++++|++++. ++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~i~l~l~~~~rs~------------~~~~~~l~~~~~~~~~~~g~~~~~g~~l~~-~~ 249 (719)
T TIGR00921 183 INYDIEREFGKDMGTTMAISGILVVLVLLLDFKRW------------WRPLLPLVIILFGVAWVLGIMGWLGIPLYA-TT 249 (719)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHHHHHhCCCccH-HH
Confidence 888887777777654 5677777777777776653 357889999999999999999999999997 67
Q ss_pred hHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHH
Q 000819 700 EVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAV 778 (1268)
Q Consensus 700 ~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v 778 (1268)
.++|.+++|+|+||++|++++|+++ .++.+.++|+.++++++|+++++|++|+++||+++.++++|++|+||+++++|+
T Consensus 250 ~~~~~l~lgi~vd~~ihl~~r~~~~~~~g~~~~~ai~~a~~~~g~~i~~t~~t~~~gf~~l~~s~~~~~~~~g~~~~~gv 329 (719)
T TIGR00921 250 LLAVPMLIGVGIDYGIQTLNRYEEERDIGRAKGEAIVTAVRRTGRAVLIALLTTSAGFAALALSEFPMVSEFGLGLVAGL 329 (719)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 7889999999999999999999986 578899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCcccccchhHHHHH---------------------H
Q 000819 779 LLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM---------------------K 837 (1268)
Q Consensus 779 ~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~L~r~~---------------------k 837 (1268)
+++++.++|++||++.+..++.++.+... +.. ... . ......+.++. .
T Consensus 330 ~~~~l~~l~~lPall~~~~~~~~~~~~~~----~~~-~~~--~----~~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~ 398 (719)
T TIGR00921 330 ITAYLLTLLVLPALLQSIDIGREKVKKEI----IAI-GGK--S----SEIEEELSKVLSITVRHPVPALVAALIITGLGL 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhccccc----ccc-cCc--c----hHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHH
Confidence 99999999999999987554432211100 000 000 0 00001111110 0
Q ss_pred HhhhccccCCccccccCCCchhhhHHHHHhhhccCC-CCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccC
Q 000819 838 ALCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG-PPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLI 916 (1268)
Q Consensus 838 ~~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g-~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~ 916 (1268)
++..+++.+.|...++|+|++..+.++.++++|+.. .|+++|+++.+..+++.. +++ +.+.+.+++ .
T Consensus 399 ~~~~~l~~~~d~~~~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~~~~~~~~~l-~~l--------~~l~~~l~~---~ 466 (719)
T TIGR00921 399 YGAAGIKPEVNIEKFIPQDLPSLQARKVIESHMGGSHDFATILVKADDVRDPELV-RFM--------DELSRDIKA---T 466 (719)
T ss_pred HhccCCCcccChhhcCCCCcHHHHHHHHHHHHhCCCCcceEEEEEcCCCCCHHHH-HHH--------HHHHHHHhh---c
Confidence 456889999999999999999999999999999865 688999886666555432 111 223333322 1
Q ss_pred CCCccccCCCCCcHHHHHHhhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChh
Q 000819 917 PQSSYIAKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTI 996 (1268)
Q Consensus 917 ~~~s~i~~~~~sWlddf~~~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~ 996 (1268)
+....+..+ .-+.|+.+..+... +.+. ...+..|+.
T Consensus 467 ~~v~~v~~~--~si~~~~~~~~~~~--------------~~~~---------------------------~~~~~lp~~- 502 (719)
T TIGR00921 467 GVAARVFGA--PSIIDLVKEVEGLP--------------APER---------------------------SALEPIPED- 502 (719)
T ss_pred cccCcccCC--CCHHHHHHHhcCCC--------------CCCc---------------------------hHHHhCCHH-
Confidence 221111122 12555554433210 0000 000111210
Q ss_pred HHHhhHHHHHhcCCCccccCCCCCCccccccccCCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCcee
Q 000819 997 QFKEKLPWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEI 1076 (1268)
Q Consensus 997 ~F~~~L~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v 1076 (1268)
.. ..| +. + ++.. ....... .+..+..+..+++.+..++...+.|+++
T Consensus 503 -~~--------------------~~~---i~--~-~~~~-----v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 549 (719)
T TIGR00921 503 -EE--------------------GGY---IS--G-GQIK-----VAVIQVQ-LKQGEPKVQGRKILRDVQHEHPPPGVKV 549 (719)
T ss_pred -Hh--------------------cce---ec--C-CceE-----EEEEecC-CcchhHHHHHHHHHHHHhccCCCCCcEE
Confidence 00 001 00 0 0001 1111111 1222333444444332222222347788
Q ss_pred eeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Q 000819 1077 FPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVM 1156 (1268)
Q Consensus 1077 ~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~i 1156 (1268)
...|...++.|..+.+.++......++++++++++++.+||++.+++.++++.+.+++++|+|+++|+++|+.+++.+.+
T Consensus 550 ~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs~~~~l~~~i~~~~~~~~~~g~~~~~gi~l~~~~~~~~~i 629 (719)
T TIGR00921 550 GVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRNPIKAVFPLIAIGSGILWAIGLMGLRGIPSFLAMATTISI 629 (719)
T ss_pred EecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhceeecceeeeehhhhccC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Q 000819 1157 AVGIAVEFCVHITHAFSVSS--GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFL 1234 (1268)
Q Consensus 1157 aiGi~VDfsiHi~~~f~~~~--~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l 1234 (1268)
.+|++|||++|+.++|+++. .+.++++++|++++|++|+.++ +|+++||++|+|++.++++.| +.+....++++++
T Consensus 630 ~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~-lt~~~gf~~l~~s~~~~~~~~-g~~~~~~i~~~~~ 707 (719)
T TIGR00921 630 ILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSG-LTTAGGFLSLLLSHFPIMRNF-GLVQGIGVLSSLT 707 (719)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhccCHHHHHH-HHHHHHHHHHHHH
Confidence 99999999999999999875 3688999999999999999987 599999999999999999998 4555667889999
Q ss_pred HHHHHHHHHHhh
Q 000819 1235 HGLVFLPVVLSV 1246 (1268)
Q Consensus 1235 ~~Li~LPvlLs~ 1246 (1268)
++++++|++|.+
T Consensus 708 ~~l~llPall~~ 719 (719)
T TIGR00921 708 AALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHhC
Confidence 999999999864
No 9
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=100.00 E-value=2.9e-41 Score=438.65 Aligned_cols=724 Identities=15% Similarity=0.159 Sum_probs=458.3
Q ss_pred ccchHHHHHHHHHHHHHhhcccccee-ccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEeccCCCCCCCCCCCC
Q 000819 383 RNPTLVLSLSMALVLLLCLGLIRFEV-ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDTTHGNLPSIVT 461 (1268)
Q Consensus 383 r~P~~vl~~~llv~~~l~~Gl~~i~~-etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~~~~~~~~g~~vl~ 461 (1268)
||||+++++|+++++++......+.. ..++..-+.|+++++++..+.++++|++..+...++++... ++ .++
T Consensus 1 r~~~~vi~~W~~~~~~~~~~~p~l~~~~~~~~~~~~p~~~~s~~a~~~l~~~F~~~~~~~~~~vv~~~------~~-~~~ 73 (910)
T TIGR00833 1 RSAYGIIGVWIATAISLQLLAPLLEDVSYFRLQAELPGGAASSIAVKEMSAAFQEAIRDPKIILVLES------NE-RLG 73 (910)
T ss_pred CcchhHHHHHHHHHHHHHhcCCCHHHHhhhcCcCCCCCCcHHHHHHHHHHHhcCCCCCCCeEEEEEeC------CC-CCC
Confidence 79999999999999887766655432 22334567899999999999999999876554444443321 11 345
Q ss_pred HHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCcccccccccccCCcccccc
Q 000819 462 ESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQHYTSTESCMS 541 (1268)
Q Consensus 462 ~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~~~~~~~s~~~cl~ 541 (1268)
++..+.+.++.+++++.. . + +.++..+|+.
T Consensus 74 ~~~~~~~~~~~~~l~~~~----~------~-----------V~~v~~~~~~----------------------------- 103 (910)
T TIGR00833 74 DKDYATYDALIAKLRADI----M------H-----------VISVVDFWGP----------------------------- 103 (910)
T ss_pred HHHHHHHHHHHHHHhcCC----C------C-----------ceecccCCCC-----------------------------
Confidence 555565556665554420 0 0 1112111110
Q ss_pred ccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccCCCeEEEEccchhH
Q 000819 542 AFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNLTLAFSSESSI 621 (1268)
Q Consensus 542 ~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl 621 (1268)
|.... +...+ +.++..+...++...+ .....+--+++.+.+++.. .+++++++++|...+
T Consensus 104 ----p~~~~----~~~s~---d~~~~~i~V~~~~~~~-----~~~~~~~v~~v~~~i~~~~----~~~g~~v~vtG~~~~ 163 (910)
T TIGR00833 104 ----PEAAE----GLRSD---DGKATIIIVNLAGEKG-----QKEAQEAINAVRRIVEQTN----APDGLTVHVTGPLAT 163 (910)
T ss_pred ----hhhHh----hccCC---CCCEEEEEEEeCCCCC-----chHHHHHHHHHHHHHHhcC----CCCCeEEEEeChHHH
Confidence 00000 00001 1123333333332111 1111112233333333321 356899999999888
Q ss_pred HHHHHhhhchhhHH-HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhcccc----ch
Q 000819 622 EEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS----TL 696 (1268)
Q Consensus 622 ~del~~~s~~d~~~-~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~----~~ 696 (1268)
..+..+....|+.. ..++++++++.+.+.+|++ ...+++++.+.+++++++|++.++|.+. +.
T Consensus 164 ~~d~~~~~~~~~~~~~~~~~~lv~llL~l~frS~------------~~~llpl~~i~lsi~~~~g~~~~lg~~~~~~l~~ 231 (910)
T TIGR00833 164 IADILESGDKDMNRITATTGIIVLIILLLVYRSP------------ITMLVPLVSVGFSVVVAQGIVSLLGIPGLIGVNA 231 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhhcccccchH
Confidence 88887777777664 4566777777777776653 3467888899999999999999999864 33
Q ss_pred hhhhHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000819 697 IIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1268)
Q Consensus 697 i~~~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 775 (1268)
+...+++.+++|+|+||.+|++++|+++ +++.+.++++.++++++|++|+++++|++++|+.+.++++|.+|.||+.++
T Consensus 232 ~~~~~l~~l~lGl~vDy~I~lv~r~~ee~~~g~~~~~Av~~a~~~~g~~I~~s~lT~~~gf~~l~~~~~~~~~~~Gi~~a 311 (910)
T TIGR00833 232 QTTVLLTALVIGAGTDYAVFLTGRYHEERRKGESLEEAAAEALRGTGKAILGSALTVAVAFLALSLARLPSFKTLGVSCA 311 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 3344556788999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCccc------ccchhHH-HH------HHHhhhc
Q 000819 776 LAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQ------RKPGLLA-RY------MKALCTR 842 (1268)
Q Consensus 776 ~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~------~~~~~L~-r~------~k~~~~~ 842 (1268)
+|++++++..+|++||++.+..||....+. +.+ .. ...+.+ +++.... -. .-++.++
T Consensus 312 ~gvl~a~l~~ltllPall~l~g~~~~~~~~------~~~--~~--~~~~~~l~~~v~r~p~~vl~v~~~ll~~~~~~~~~ 381 (910)
T TIGR00833 312 VGVLVALLNAVTLTPALLTLEGREGLMKPG------RKS--KI--RFIWRRLGTAVVRRPWPILVTTLIISGVSLLALPL 381 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCc------ccc--hH--hHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999998776321100 000 00 000000 0010000 00 0045678
Q ss_pred cccCCccccccCCCchhhhHHHHHhhhccCC--CCEEEEEec-CCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCC
Q 000819 843 IEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQS 919 (1268)
Q Consensus 843 I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g--~pvy~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~ 919 (1268)
++.++|...++|+|++.++.++.++++|+.+ .|++++++. .+..+++..+ .+ +.+.+.+++ .|+.
T Consensus 382 l~~~~~~~~~~p~~~~~~~~~~~l~~~f~~~~~~p~~Vvv~~~~~~~~p~~l~-~l--------~~l~~~l~~---~~gV 449 (910)
T TIGR00833 382 IRTGYDDEKMIPTDLESVQGYEAADRHFPGNSMDPMVVMIKSDHDVRNPALLA-DI--------DRFEREIKA---VPGI 449 (910)
T ss_pred CCcCCCcHhhcCCCCcHHHHHHHHHHhCCCccCCCeEEEEeCCCCCCCHHHHH-HH--------HHHHHHHhc---CCCc
Confidence 9999999999999999999999999999877 799999984 3665553221 11 112222221 1111
Q ss_pred ccc---cCCCCC--------------------------------------------------------------------
Q 000819 920 SYI---AKPAAS-------------------------------------------------------------------- 928 (1268)
Q Consensus 920 s~i---~~~~~s-------------------------------------------------------------------- 928 (1268)
..+ ..|...
T Consensus 450 ~~V~~~~~p~g~~~~~~~~~~q~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 529 (910)
T TIGR00833 450 NMVQETQRPDGVVIKKTYLTFQAGNLGDQLDEFSDQLTSRQAYLLQDAEKIAEAIAGLRLVQAGMRLDGENLGQVSLAVR 529 (910)
T ss_pred ceeecCCCCCCCccchhhHHHHHhhHhhhHHhhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111100
Q ss_pred ------------------cHHHHHHhhcccccccccccCCCCCCCCC-------CCC-----------------------
Q 000819 929 ------------------WLDDFLVWISPEAFGCCRKFTNGSYCPPD-------DQP----------------------- 960 (1268)
Q Consensus 929 ------------------Wlddf~~~l~~~~~~cc~~~~~~~~~~~~-------~~~----------------------- 960 (1268)
|++-..+|...+ ..| .. +..|-.. +..
T Consensus 530 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (910)
T TIGR00833 530 LMQQAISKLQGSAGDVFDIFDPLRRFVAAI-PEC-RA---NPVCSVAREIVQAADTVVSSAAKLADAAGQLARGIADVAS 604 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCc-cc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222111 011 10 0000000 000
Q ss_pred ---------------------CCCCC----CCC-CCCCCCcc-cCCCcccccCCcCCCCC----ChhHHHhhHHHHHhcC
Q 000819 961 ---------------------PCCPS----GQS-SCGSAGVC-KDCTTCFHHSDLLKDRP----STIQFKEKLPWFLNAL 1009 (1268)
Q Consensus 961 ---------------------~~~~~----~~~-~~~~~~~~-~~c~~c~~~~~~~~~~P----~~~~F~~~L~~fl~~~ 1009 (1268)
-...+ +.. ....+... .+-..-..+.. .-+| +.++|.+.+..|.+.
T Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~p~~~~~~~~f~~~~~~~~s~- 681 (910)
T TIGR00833 605 ALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKLKGNAMGVD--FYAPPRIFTDPNFKAVLDYFLSP- 681 (910)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC--cccChHHhCCHhHHHHHHHhcCC-
Confidence 00000 000 00000000 00000000000 0011 124555555444431
Q ss_pred CCccccCCCCCCccccccccCCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcc---cCCceeeeccceeehh
Q 000819 1010 PSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSD---SLQMEIFPYSVFYMYF 1086 (1268)
Q Consensus 1010 p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~---~~~~~v~~~~~~~v~~ 1086 (1268)
++ ..+++..+.+.-...++-.+.++++|+..++..+ ..+.++...|......
T Consensus 682 -----------------------dg--~~~~~~v~~~~~p~~~~~~~~v~~lr~~~~~~~~~~~~~~~~~~vtG~~~~~~ 736 (910)
T TIGR00833 682 -----------------------DG--HAARLLVYGDGSPAGDQGAQEFNAIRTVAEEAIQRADLEPAKVELAGVSAVNR 736 (910)
T ss_pred -----------------------CC--CeEEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCEEEEeChhhHHH
Confidence 11 1234444433222334445777777776655432 2357788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccc-----cch-HHHHHHHHhhce
Q 000819 1087 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQ-----LNA-VSVVNLVMAVGI 1160 (1268)
Q Consensus 1087 eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~-----LN~-vS~v~l~iaiGi 1160 (1268)
|....+.++......+++++|++++++++||+...+++++++.+++.+.+|++++++.. ++. +.++..++.+|+
T Consensus 737 d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS~~~pl~~l~~v~ls~~~s~G~~~~~~~~~~g~~l~~~~~~~~~~il~gl 816 (910)
T TIGR00833 737 DLRDLVNSDLGLISIITLAIVFMILALLLRAPVAPIVLIGSVALSYLWALGLSVLAFQHILGAELHWSVLAGVFVLLVAL 816 (910)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHh
Confidence 99889999999999999999999999999999999999999999999999999876544 444 455667888999
Q ss_pred eecceeeeehhhhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1161 AVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVF 1239 (1268)
Q Consensus 1161 ~VDfsiHi~~~f~~~~-~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~ 1239 (1268)
++||+||+..||+++. +..++++.++++++|++|+.++ +|+++||..|++++...++.|.+.+.+.+++-+++.-+++
T Consensus 817 gvDY~I~l~sR~ree~~~g~~~av~~a~~~tg~~I~~a~-~~~~~~f~~l~~s~~~~l~~~G~~~a~gvl~~a~~v~~~l 895 (910)
T TIGR00833 817 GVDYNMLLVSRIKEESPAGNRTGIIRALGSTGGVITAAG-LVFAGTMAALASAQLTAIAQFGFTVGVGILLDTFIVRSVT 895 (910)
T ss_pred hhchHHHHHHHHHHHHhcCccHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 2346889999999999999987 5899999999999999999885444433333467777899
Q ss_pred HHHHHhhhCCCC
Q 000819 1240 LPVVLSVFGPPS 1251 (1268)
Q Consensus 1240 LPvlLs~~gp~~ 1251 (1268)
+|+++.++|+..
T Consensus 896 ~Pall~l~g~~~ 907 (910)
T TIGR00833 896 VPALTLLLGRWI 907 (910)
T ss_pred HHHHHHHhcccc
Confidence 999999998764
No 10
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=100.00 E-value=6.8e-39 Score=416.64 Aligned_cols=559 Identities=16% Similarity=0.177 Sum_probs=353.7
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 608 ~~~l~v~f~~~~sl~del~~~s~~d~~~-~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl 686 (1268)
++++++.++|...+..|..+....|+.. ..++++++++.+.+.+|++ ...+..++++.+++++++|+
T Consensus 246 ~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~------------~~~l~~l~~i~~s~~~~~~~ 313 (862)
T TIGR03480 246 DHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSP------------RLVFAVLVTLIVGLILTAAF 313 (862)
T ss_pred CCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhH------------HHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988888887777778776 4677788888887777764 23677788889999999999
Q ss_pred HHhhccccchhhhhHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCch
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1268)
Q Consensus 687 ~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p 765 (1268)
+.++|.+++. ++.+.+.+++|+||||++|++++|+++ .++.+.++++.+++++.|++++++++|+++||+++.++++|
T Consensus 314 ~~l~~~~ln~-~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~lTt~~gf~~l~~~~~~ 392 (862)
T TIGR03480 314 ATLAVGHLNL-ISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAALATAAGFFAFLPTDYK 392 (862)
T ss_pred HHHHHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 9999999997 677889999999999999999999986 46788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCcccccch-hHHHHH------HH
Q 000819 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPG-LLARYM------KA 838 (1268)
Q Consensus 766 ~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~-~L~r~~------k~ 838 (1268)
.+|.||+.+++|++++++..++++|+++.+..++.+.++.. ......-..+..+.+. .+.-.+ -+
T Consensus 393 ~~~~lg~~~~~gv~~s~l~~l~llP~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~v~~~~l~l~~~~~~ 464 (862)
T TIGR03480 393 GVSELGIIAGTGMFIALFVTLTVLPALLRLLRPPRRRKPPG--------YATLAPLDAFLRRHRRPVLGVTLILGIAALA 464 (862)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccCcc--------chhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998763221111000 0000000000000000 000000 04
Q ss_pred hhhccccCCccccccCCCchhhhHHHHHhhhccCCCCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCC
Q 000819 839 LCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQ 918 (1268)
Q Consensus 839 ~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~ 918 (1268)
+..+++.+.|+..++|+++...+.++.+.+....++..+.++.+ + ++.. +.+.+.+++ .|+
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~vl~~-~---~~~~------------~~~~~~l~~---~~~ 525 (862)
T TIGR03480 465 LLPQLRFDFNPLNLQDPKTESVRTFLELLADPDTSPYSAEVLAP-S---APEA------------RALTERLEA---LPE 525 (862)
T ss_pred HhccCCCCCCchhccCCCchHHHHHHHHHhCcccCCCceEEecC-C---HHHH------------HHHHHHHhC---CCC
Confidence 56788999999999999999999999988887655433333221 1 1111 012233322 222
Q ss_pred CccccCCCCCcHHHHHH---------------hhcccccccccccCCCCCCCCCCCCCCCC--CCC----C-CCCCCCcc
Q 000819 919 SSYIAKPAASWLDDFLV---------------WISPEAFGCCRKFTNGSYCPPDDQPPCCP--SGQ----S-SCGSAGVC 976 (1268)
Q Consensus 919 ~s~i~~~~~sWlddf~~---------------~l~~~~~~cc~~~~~~~~~~~~~~~~~~~--~~~----~-~~~~~~~~ 976 (1268)
... ...+.||.. -+++.. ......|....+ ... .++ . .-......
T Consensus 526 V~~-----v~sl~~~v~~~q~~kl~~i~~~~~~l~~~~-------~~~~~~~~~~~~-~~~~~l~~~~~~l~~~~~~~~~ 592 (862)
T TIGR03480 526 VDQ-----VVTLPDFVPDDQEAKLALIADLALVLGPTL-------NPGEADPAPSAE-EVAAALRRLAARLRAAAAKSQD 592 (862)
T ss_pred cce-----EeehhhcCCCCHHHHHHHHHHHHHHhCccc-------CCccCCCCCChH-HHHHHHHHHHHHHHHHhhccCC
Confidence 111 111222221 111000 000000000000 000 000 0 00000000
Q ss_pred cCCCccc----ccCCcCCCCCChhH----HHh----hHHH-------HHhcCCCc--cccCCCCCCccccccccCCCCce
Q 000819 977 KDCTTCF----HHSDLLKDRPSTIQ----FKE----KLPW-------FLNALPSA--SCAKGGHGAYTNSVDLKGYENGI 1035 (1268)
Q Consensus 977 ~~c~~c~----~~~~~~~~~P~~~~----F~~----~L~~-------fl~~~p~~--~c~~gg~~~y~~~v~~~~~~~~~ 1035 (1268)
.+|..-. ....+....+..++ +.+ .++. .++..|-. .-+. .+.+. +.. .++.
T Consensus 593 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~lp~----~~~~~--~~~-~~~~ 665 (862)
T TIGR03480 593 PDAAAAGRLAASLDRLLAKAPAQAATLRALQGALLAGLPGELDRLRDSLQAEPVTLEDLPP----DLRRR--WVA-KDGR 665 (862)
T ss_pred cchHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhHHHHHHHHHHHccCCCCChhhCCH----HHHHh--HcC-CCCC
Confidence 0110000 00000000000000 000 0000 00000000 0000 00000 100 1111
Q ss_pred EEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1036 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITT 1115 (1268)
Q Consensus 1036 I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~ 1115 (1268)
.+...+ +..+..+. +..+++++++++. ....+|....+.+....+..+....+++++++|++++++.+
T Consensus 666 ---~~l~v~--~~~~~~~~----~~l~~~~~~v~~~---~~~~tG~~~~~~~~~~~i~~~~~~~~~~a~~~i~lll~~~f 733 (862)
T TIGR03480 666 ---ARLEVF--PKEDLNDN----EALRRFVRAVRKV---APDATGAPVSILESGDTVVGAFLQAFIYALVAITVLLLLTL 733 (862)
T ss_pred ---EEEEEe--cCCCcchH----HHHHHHHHHHHhh---CCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222 22221111 2222333333221 11245777777777788888888899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccCCCHHHHHHHHHHHHHHHHH
Q 000819 1116 CSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVF 1195 (1268)
Q Consensus 1116 ~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~~~~~~r~~~al~~~g~~V~ 1195 (1268)
||++.++++++++++.+++++|+|+++|++||..+++.+.+.+|++|||+||+.++|+++.+.. . .. .+++|.+|+
T Consensus 734 rs~~~~l~~l~P~~l~~~~~~g~m~~~gi~l~~~~~~~~~l~lGigVDy~I~~~~r~~~~~~~~-~-~~--~~~~g~ai~ 809 (862)
T TIGR03480 734 RRVRDVLLVLAPLLLAGLLTVAAMVLLGIPFNFANIIALPLLLGLGVDFGIYMVHRWRNGVDSG-N-LL--QSSTARAVF 809 (862)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHhhhhhhHHHHHHHHHHhccch-h-HH--HhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998775321 1 11 246899999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1196 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1196 ~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
.++ +|+++||++|+|++.+.++.| +.+....++++++.+++++|+|+
T Consensus 810 ~sa-ltt~~gf~~l~~s~~~~~~~~-G~~~~~gi~~~l~~~l~~lPall 856 (862)
T TIGR03480 810 FSA-LTTATAFGSLAVSSHPGTASM-GILLSLGLGLTLLCTLIFLPALL 856 (862)
T ss_pred HHH-HHHHHHHHHHHHhcCccHHHH-HHHHHHHHHHHHHHHHHHHHhhc
Confidence 997 699999999999999999987 45555678899999999999988
No 11
>COG1033 Predicted exporters of the RND superfamily [General function prediction only]
Probab=99.96 E-value=6.8e-27 Score=287.86 Aligned_cols=361 Identities=17% Similarity=0.253 Sum_probs=263.9
Q ss_pred HHHHHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEE
Q 000819 366 VQGYMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 445 (1268)
Q Consensus 366 ~~~~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii 445 (1268)
-...++..+.+++.+.+|||+.++++.++++++..+|..+++.++|..+ +.|+|+|+.++.++.+++||+...+ .+++
T Consensus 364 ~~~~~~~~l~~i~~~~~~~~~~~L~vali~~~~~~yg~~~v~~~~d~~k-~~p~d~p~~~~~~~i~~~~ggs~~~-~i~~ 441 (727)
T COG1033 364 KKGKLEKRLSKIAKIIARHPVTVLVVALIIVGVSLYGASKVKIETDIEK-YLPQDLPALKALDFIEKEFGGSDPI-TIVL 441 (727)
T ss_pred cchhHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHhhhhhcccccchHh-hcCCCcHHHHHHHHHHHHcCCCceE-EEEE
Confidence 3455677899999999999999999999999999999999999999877 6899999999999999999987432 2333
Q ss_pred EeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCccc
Q 000819 446 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEH 525 (1268)
Q Consensus 446 ~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~ 525 (1268)
.+ .+..||+.++|+.++++++++.... ..+..++- ...-++.+... .+. .+
T Consensus 442 ~~---------~d~~dp~~l~~md~l~~~l~~~~~~----V~s~~siv----------~~vk~~~~~~~---p~~--~~- 492 (727)
T COG1033 442 EA---------EDVRDPEVLRWMDELEEELEKGEEH----VFSASSIV----------DLVKQVNGGII---PDK--SK- 492 (727)
T ss_pred EC---------CCCCChHHHHHHHHHHHHHHhccee----eeccchHH----------HHHHHHhcCCC---Ccc--hh-
Confidence 32 1258999999999999999875321 11111110 01111211110 000 00
Q ss_pred ccccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhcccc
Q 000819 526 VKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPM 605 (1268)
Q Consensus 526 l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~ 605 (1268)
++...++. |-++ . ...++...-..+.+.+... .+..+.--+++.+.+++..
T Consensus 493 ~~~i~~~~------------~~~~---~----~~~~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~--- 543 (727)
T COG1033 493 IQIILEEL------------PESI---K----KRYISGDQLNLLGYSLGDT-------QGELEDVGREILRDIEKEN--- 543 (727)
T ss_pred HHHHHHhc------------chhH---h----hcccCCCceeeeecccccc-------hhHHHHHHHHHHHHHHhhc---
Confidence 11111100 1000 0 0011111111122222211 1112222234444444432
Q ss_pred ccCCCeEEEEccchhHHHHHHhhhchhhH-HHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHH
Q 000819 606 VQSKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 684 (1268)
Q Consensus 606 ~~~~~l~v~f~~~~sl~del~~~s~~d~~-~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~ 684 (1268)
.+.+++++.+|+..+..++++....+-. ..+++++++++.+.+.+|+. .-++.+++++..++.|++
T Consensus 544 -~~~gv~~~vtG~~vi~~~m~~~i~~sq~~~t~l~~~~V~~ll~i~fRs~------------~~~i~~iipi~~~v~~~~ 610 (727)
T COG1033 544 -IPTGVKVYVTGESVIYVEMNELLTSSQLISTVLGIILVFALLLIIFRSP------------LKAIIPLIPIAIVVGWNF 610 (727)
T ss_pred -CCCCcEEEEcCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhch------------HHhHHHHHHHHHHHHHHH
Confidence 3567899999999999999887766544 56788888888888887764 348999999999999999
Q ss_pred HHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCc
Q 000819 685 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1268)
Q Consensus 685 Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~ 764 (1268)
|+|+++|+++++ ++..+..+++|+|+||++|+++||+++++...+++|+.+++.++|++++.+++|+++||+++.+|++
T Consensus 611 ~~M~l~gI~~~~-~ta~v~ai~lGiGvDYsIh~~ery~eer~~~~~~eAi~~t~~~~G~ail~s~ltt~~GF~aLi~S~f 689 (727)
T COG1033 611 GLMGLLGIPLTP-ATATLGAIILGIGVDYSIHITERYREERKKGGPKEAIETTVERTGKAILASALTTAIGFLALIFSPF 689 (727)
T ss_pred HHHHHhCCchhH-HHHHHHHHhhhccchhhhHHHHHHHHHHhcCCchHHHHHHHHhhchHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999998 7888999999999999999999999986433399999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000819 765 PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 765 p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~ 800 (1268)
|.+++||+.++++++++.+.+++++||+|.+..+|.
T Consensus 690 ~i~snfGll~~~~il~sl~asl~~lPall~~~~~~~ 725 (727)
T COG1033 690 PIISNFGLLTVIGILLSLLASLVLLPALLVLLDGRR 725 (727)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhccc
Confidence 999999999999999999999999999998766554
No 12
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=99.95 E-value=3.4e-28 Score=250.81 Aligned_cols=152 Identities=50% Similarity=0.838 Sum_probs=148.1
Q ss_pred cccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHh
Q 000819 661 YISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVE 740 (1268)
Q Consensus 661 ~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~ 740 (1268)
+++||+++++.+++.+++|+++++|++.++|++++++..+++||++++||+||+|+++++|++.+...++++|+++++++
T Consensus 1 ~v~S~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~ 80 (153)
T PF12349_consen 1 MVGSRFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSR 80 (153)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 47999999999999999999999999999999999988889999999999999999999999998888889999999999
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccc
Q 000819 741 VGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLK 812 (1268)
Q Consensus 741 ~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~ 812 (1268)
+|++++.++++++++|++++++++|++|+||+++++++++++++++|+|||+|++|.||.+.+|.|++||+|
T Consensus 81 ~G~si~~t~l~~~~af~~~~~~~~~~l~~Fc~faa~~l~~d~~l~~tff~avLsld~~r~~~~~~~~~~~~~ 152 (153)
T PF12349_consen 81 VGPSILLTSLTEIVAFLIGAFSPVPALREFCLFAALALLFDFLLQLTFFPAVLSLDLRRLLADRLDCFCCIR 152 (153)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcceeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999999999976
No 13
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=99.95 E-value=6.8e-28 Score=293.30 Aligned_cols=168 Identities=22% Similarity=0.391 Sum_probs=157.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcc
Q 000819 631 ADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVG 710 (1268)
Q Consensus 631 ~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iG 710 (1268)
.|+.++.++|++||+|+++.+++++. ++||++||+.|++++++|+++++|+++++|++++.| .+++|||+|+||
T Consensus 60 ~Dv~iv~isy~vmflYis~~l~~l~~-----v~SK~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I-~eViPFLvLaIG 133 (886)
T TIGR00920 60 SDVIVMTITRCIAVLYIYYQFCNLRQ-----LGSKYILGIAGLFTIFSSFVFSTAVIHFLGSELTGL-NEALPFFLLLID 133 (886)
T ss_pred cceEEeeHHHHHHHHHHHHHhCCccc-----cCcchhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHhHHHhhhc
Confidence 48888999999999999999998764 899999999999999999999999999999999995 999999999999
Q ss_pred ccceehHHHHHH-HhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 711 VDNMCILVHAVK-RQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAF 789 (1268)
Q Consensus 711 vd~~~~l~~~~~-~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~f 789 (1268)
+||+|+|.+. + +..+..++++||+++|+++||||++++++++++|++|++++||++|.||+|++++|+++|++|+|||
T Consensus 134 VDnifiLa~~-~~~t~~~~~v~eRIa~~l~~vGpSItltslte~l~F~vGtls~mPAV~~Fc~ya~vAVl~nyllQmTfF 212 (886)
T TIGR00920 134 LSKASALAKF-ALSSNSQDEVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVRRLEVLCCFGCMSVLANYFVFMTFF 212 (886)
T ss_pred hhhHHHHHhh-hhccCCCCCHHHHHHHHHHHhccceeHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999555 5 4557889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccccCc
Q 000819 790 VALIVFDFLRAEDKRV 805 (1268)
Q Consensus 790 palL~l~~rr~~~~r~ 805 (1268)
+|+|+|..+|+..+|+
T Consensus 213 ~A~LsL~~~le~~~~h 228 (886)
T TIGR00920 213 PACLSLVLELSRSGRE 228 (886)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999988766654
No 14
>TIGR00921 2A067 The (Largely Archaeal Putative) Hydrophobe/Amphiphile Efflux-3 (HAE3) Family. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. They fall into seven phylogenetic families, this family (2.A.6.7) consists of uncharacterised putative transporters, largely in the Archaea.
Probab=99.93 E-value=1.5e-23 Score=269.91 Aligned_cols=352 Identities=13% Similarity=0.186 Sum_probs=250.4
Q ss_pred HHHHHHHHhchhhhccchHHHHHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEec
Q 000819 369 YMSNFYRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATI 448 (1268)
Q Consensus 369 ~l~~~f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~ 448 (1268)
.++++++++++++.|||+.++++++++++++.+|+.+++++.|+.+ |.|+++++++..++++++||+.....++++..
T Consensus 367 ~~~~~l~~~~~~~~r~~~~vl~v~lll~~~~~~~~~~l~~~~d~~~-~~p~~s~~~~~~~~l~~~f~~~~~~~~vvv~~- 444 (719)
T TIGR00921 367 EIEEELSKVLSITVRHPVPALVAALIITGLGLYGAAGIKPEVNIEK-FIPQDLPSLQARKVIESHMGGSHDFATILVKA- 444 (719)
T ss_pred HHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhccCCCcccChhh-cCCCCcHHHHHHHHHHHHhCCCCcceEEEEEc-
Confidence 3567788999999999999999999999999999999999999875 46999999999999999998753233444431
Q ss_pred cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCcccccc
Q 000819 449 PDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKY 528 (1268)
Q Consensus 449 ~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~ 528 (1268)
+++.+++.++++.++++++++.... ....+ ..|+.+++........+. +...+
T Consensus 445 --------~~~~~~~~l~~l~~l~~~l~~~~~v--~~v~~--------------~~si~~~~~~~~~~~~~~---~~~~~ 497 (719)
T TIGR00921 445 --------DDVRDPELVRFMDELSRDIKATGVA--ARVFG--------------APSIIDLVKEVEGLPAPE---RSALE 497 (719)
T ss_pred --------CCCCCHHHHHHHHHHHHHHhhcccc--CcccC--------------CCCHHHHHHHhcCCCCCC---chHHH
Confidence 2488999999999999998875321 11111 123333322110000000 00000
Q ss_pred cccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccC
Q 000819 529 CFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQS 608 (1268)
Q Consensus 529 ~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~ 608 (1268)
. ++. ..... .+ .+++ ..+.+...+... ++..+.. +++.+.+++. ..+
T Consensus 498 ~----------lp~---~~~~~-~i---~~~~------~~v~~~~~~~~~--~~~~~~~----~~~~~~~~~~----~~~ 544 (719)
T TIGR00921 498 P----------IPE---DEEGG-YI---SGGQ------IKVAVIQVQLKQ--GEPKVQG----RKILRDVQHE----HPP 544 (719)
T ss_pred h----------CCH---HHhcc-ee---cCCc------eEEEEEecCCcc--hhHHHHH----HHHHHHHhcc----CCC
Confidence 0 000 00000 00 1111 122222222111 0111111 2222222221 135
Q ss_pred CCeEEEEccchhHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHH
Q 000819 609 KNLTLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 609 ~~l~v~f~~~~sl~del~~~s~~d~~~-~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~ 687 (1268)
+++++..+|...+..++.+....+... ..++++++++.+.+.+|+ +..++.+++++++++++++|++
T Consensus 545 ~~~~~~v~G~~~~~~~~~~~i~~~~~~~~~l~~~~v~l~l~~~frs------------~~~~l~~~i~~~~~~~~~~g~~ 612 (719)
T TIGR00921 545 PGVKVGVTGLPVAFAEMHELVNEGMRRMTIAGAILVLMILLAVFRN------------PIKAVFPLIAIGSGILWAIGLM 612 (719)
T ss_pred CCcEEEecChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999888888888777666553 566777777777777655 3458889999999999999999
Q ss_pred HhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHH
Q 000819 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPAC 767 (1268)
Q Consensus 688 ~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~v 767 (1268)
+++|++++. .+.++..+++|+|+||++|++++|+++.+..+.++|+.++++++|++++.+++|+++||+++.++++|.+
T Consensus 613 ~~~gi~l~~-~~~~~~~i~lGigvDy~i~~~~r~~~~~~~~~~~~ai~~a~~~~g~ai~~s~lt~~~gf~~l~~s~~~~~ 691 (719)
T TIGR00921 613 GLRGIPSFL-AMATTISIILGLGMDYSIHLAERYFEERKEHGPKEAITHTMERTGPGILFSGLTTAGGFLSLLLSHFPIM 691 (719)
T ss_pred HHHcccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCHHH
Confidence 999999987 6777788999999999999999999875447899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 768 RVFSMFAALAVLLDFLLQITAFVALIVF 795 (1268)
Q Consensus 768 r~F~i~aa~~v~~~~l~~lt~fpalL~l 795 (1268)
|+||+.+++|++++++..++++||+|.+
T Consensus 692 ~~~g~~~~~~i~~~~~~~l~llPall~~ 719 (719)
T TIGR00921 692 RNFGLVQGIGVLSSLTAALVVFPALLVL 719 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999864
No 15
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.91 E-value=2.5e-21 Score=255.17 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1132 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~ 1132 (1268)
+..+.++++++..++++-+.|+++...| ..++......+....+++++++|++++...+.|++.++++++++++++
T Consensus 827 ~~~~~~~~i~~~~~~~~lP~g~~~~~~g----~~~~~~~~~~~l~~~~~iai~li~l~L~~~f~S~~~pliI~~tIPls~ 902 (1040)
T PRK10503 827 SLGDAVQAIMDTEKTLNLPADITTQFQG----STLAFQSALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAG 902 (1040)
T ss_pred CHHHHHHHHHHHHHhcCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence 3445555555554443222344442221 112233444667777889999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhh----hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1133 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF----SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208 (1268)
Q Consensus 1133 v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f----~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~v 1208 (1268)
++.+..|+++|++||.+|++.+++.+|+.||++|.++... ++++.++.+++.+|.++..+||+.++ +||++|++|
T Consensus 903 ~G~~~~l~l~g~~l~~~sliGli~l~GivV~naIvlvd~~~~~~~~~G~~~~eAi~~a~~~R~rPIlmTt-ltti~gllP 981 (1040)
T PRK10503 903 VGALLALMIAGSELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT-LAALLGALP 981 (1040)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEehHHhHHHHHcCCCHHHHHHHHHhhhhhhHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999999432 23345899999999999999999997 699999999
Q ss_pred hhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1209 LCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1209 L~fs~~~---i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
|+|+.+. +++-+ ...++..+++|.+.+|+++|+++.++.
T Consensus 982 lal~~G~g~e~~~pl-a~~ii~GL~~St~ltL~vvP~ly~~~~ 1023 (1040)
T PRK10503 982 LMLSTGVGAELRRPL-GICMVGGLIVSQVLTLFTTPVIYLLFD 1023 (1040)
T ss_pred HHHhcCCChHHhCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998754 22222 233445677888999999999999983
No 16
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.91 E-value=3e-21 Score=254.84 Aligned_cols=201 Identities=13% Similarity=0.092 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000819 1054 YVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVV 1133 (1268)
Q Consensus 1054 ~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v 1133 (1268)
..+.++.++++.++++ .|+++-..|. +++...........+++++++|++++.+.|+|++.+++++++++++++
T Consensus 836 ~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~li~lvl~~~F~S~~~pliI~~~iPlsl~ 909 (1044)
T TIGR00915 836 TGEAMAAMEAIAQKLP--PGFGFSWTGM----SYEERLSGSQAPALYALSLLVVFLCLAALYESWSIPVSVMLVVPLGII 909 (1044)
T ss_pred HHHHHHHHHHHHHhCC--CCceEeeccH----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4445555555554443 3555433331 123333334566667889999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1134 DLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1210 (1268)
Q Consensus 1134 ~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~---~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~ 1210 (1268)
+.+..++++|.+||.++++.+++.+|+.|+++|+++..+. +++.++.+++.+|.++-.+||+.++ +||++|++||+
T Consensus 910 G~~~~l~~~g~~l~~~sl~G~i~l~GivVnnaIvlvd~~~~~~~~G~~~~~Ai~~a~~~RlRPIlmTt-ltti~gllPla 988 (1044)
T TIGR00915 910 GALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKELMAQGKSIVEAALEAARMRLRPILMTS-LAFILGVVPLA 988 (1044)
T ss_pred HHHHHHHHHCCCccHHHHHHHHHHHHHHHcceEeeHHHHHHHHHcCCCHHHHHHHHHHhhhchHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999995443 3345789999999999999999997 69999999999
Q ss_pred cccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccchhhccccCCCC
Q 000819 1211 FSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVERQEERPSV 1265 (1268)
Q Consensus 1211 fs~~~---i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~~~~~~~~~~~~~ 1265 (1268)
|+... +++-. ....+..+++|.+.+|+++|+++.++.+. .+..++|..|++
T Consensus 989 ~~~g~g~~~~~pl-ai~vigGL~~st~ltL~vvP~ly~~~~~~---~~~~~~~~~~~~ 1042 (1044)
T TIGR00915 989 ISTGAGSGSQHAI-GTGVFGGMVTATVLAIFFVPLFYVVVRRL---FKRKSTKKEPSV 1042 (1044)
T ss_pred HhcCCChHHhCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCcccCCCCCCC
Confidence 98643 22222 12333457788899999999999987543 555677777765
No 17
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.91 E-value=2.8e-20 Score=245.52 Aligned_cols=188 Identities=12% Similarity=0.042 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000819 1054 YVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVV 1133 (1268)
Q Consensus 1054 ~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v 1133 (1268)
..++.+.++++.++++ .|+++...|. +++...........+++++++|++++++.|+|++.+++++++|+++++
T Consensus 835 ~~~~~~~i~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~al~lv~~il~~~f~s~~~pliI~~~IPlal~ 908 (1037)
T PRK10555 835 TGTAMDIMESLVKQLP--NGFGLEWTAM----SYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVI 908 (1037)
T ss_pred HHHHHHHHHHHHHhCC--CCcEEEecCh----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHH
Confidence 3455666666655543 3555544442 122222223344556788888999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1134 DLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1210 (1268)
Q Consensus 1134 ~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~---~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~ 1210 (1268)
+.+..|+++|.+||..+++.+++.+|+.|+++|.++.... +++.++.+++.+|-++..+||+.++ +|+++|++||+
T Consensus 909 G~l~~L~i~g~~l~~~sl~Gli~l~GivV~naIvlvd~i~~~~~~G~~~~~Ai~~A~~~RlRPIlmTt-ltti~gllPla 987 (1037)
T PRK10555 909 GALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHASRQRLRPILMTS-LAFIFGVLPMA 987 (1037)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEeHHHHHHHHHcCCCHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999984332 3345789999999999999999996 69999999999
Q ss_pred cccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1211 FSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1211 fs~~~i~~~f--~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
|+.+..-+.+ ....++..+++|.+.+|+++|+++.++-
T Consensus 988 l~~g~g~~~~~pla~~ii~GL~~St~ltL~vvP~ly~~~~ 1027 (1037)
T PRK10555 988 TSTGAGSGSQHAVGTGVMGGMISATILAIFFVPLFFVLVR 1027 (1037)
T ss_pred HhcCCChHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9875432222 1223445677889999999999999874
No 18
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.91 E-value=1.1e-20 Score=249.25 Aligned_cols=190 Identities=14% Similarity=0.133 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1132 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~ 1132 (1268)
+..++.+++++..++++-+.|+++-..| .+++......+....+++++++|++++.+.|.|++.++++++++++++
T Consensus 813 ~~~~~~~~i~~~l~~~~lP~g~~~~~~G----~~~~~~~~~~~l~~~~~~al~li~liL~~~F~S~~~pliI~~tIPlal 888 (1025)
T PRK10614 813 SLSDASAAIERAMTQLGVPSTVRGSFAG----TAQVFQETMNSQLILILAAIATVYIVLGILYESYVHPLTILSTLPSAG 888 (1025)
T ss_pred CHHHHHHHHHHHHHhCCCCCCeEEEecc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3445555555555543222344332222 123334444566778889999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh---cc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1133 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208 (1268)
Q Consensus 1133 v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~---~~-~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~v 1208 (1268)
++.+..++++|.+||..+++.+++.+|+.|+++|.++..+. .+ +.++.+++.+|-++-.+||+.++ +||++|++|
T Consensus 889 ~G~~~~L~l~g~~l~~~s~iG~i~L~GIvvnNaIllvd~~~~~~~~~g~~~~~Aii~A~~~RlRPIlmTt-lTti~GllP 967 (1025)
T PRK10614 889 VGALLALELFNAPFSLIALIGIMLLIGIVKKNAIMMVDFALEAQRNGNLTAQEAIFQACLLRFRPIMMTT-LAALFGALP 967 (1025)
T ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHHHHHcCeEEehHHHHHHHHhcCCCHHHHHHHHHHhhhhHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999985433 22 34788999999999999999997 699999999
Q ss_pred hhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1209 LCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1209 L~fs~~~---i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
|+++.+. +.+-. ...++..+++|.+.+|+++|+++.++.
T Consensus 968 lal~~g~g~~~~~pm-Ai~iigGL~~sT~ltL~vvP~lY~~~~ 1009 (1025)
T PRK10614 968 LVLSGGDGAELRQPL-GITIVGGLVMSQLLTLYTTPVVYLFFD 1009 (1025)
T ss_pred HHHhcCCCHHHhCCc-hhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998643 22222 223344577888899999999999983
No 19
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.91 E-value=1.8e-21 Score=257.91 Aligned_cols=166 Identities=13% Similarity=0.112 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeeccee
Q 000819 1087 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 1166 (1268)
Q Consensus 1087 eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsi 1166 (1268)
++......+....+++++++|+++++++|+|++.++++++++++++++.+..|+++|.+||..+++.+++.+|+.||++|
T Consensus 871 ~~~~~~~~~l~~~~~~a~~li~lvL~~~f~s~~~~lii~~~iPl~~~g~~~~l~~~g~~l~~~s~~G~i~l~GivV~naI 950 (1051)
T TIGR00914 871 EQLQSATKRLQIVVPVTLLLIFVLLYAAFGNVKDALLVFTGIPFALTGGVFALWLRGIPLSISAAVGFIALSGVAVLNGL 950 (1051)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhhhh
Confidence 33444556667778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 000819 1167 HITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLP 1241 (1268)
Q Consensus 1167 Hi~~~f~---~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f--~f~m~~~~v~~~~l~~Li~LP 1241 (1268)
|+..++. +++.++.+++.+|.++..+||+.+. +||++||++|+++.+...+.+ ...+.+..+++|.+.+|+++|
T Consensus 951 vlv~~~~~~~~~g~~~~~Ai~~a~~~r~rpIl~tt-ltti~g~lPl~~~~g~~~~~~~pla~~v~~gl~~s~~~tL~~vP 1029 (1051)
T TIGR00914 951 VMISFIRKLLEEGPSLDEAVYEGALTRVRPVLMTA-LVASLGFVPMAIATGTGAEVQRPLATVVIGGIITATLLTLFVLP 1029 (1051)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHhcCCCChhhhcCceEEEEchHHHHHHHHHHHHH
Confidence 9995554 3345889999999999999999986 799999999999875433221 122334568899999999999
Q ss_pred HHHhhhCCCCcc
Q 000819 1242 VVLSVFGPPSRC 1253 (1268)
Q Consensus 1242 vlLs~~gp~~~~ 1253 (1268)
+++.++.++...
T Consensus 1030 ~l~~~~~~~~~~ 1041 (1051)
T TIGR00914 1030 ALYRLVHRRRHK 1041 (1051)
T ss_pred HHHHHHHhhhhh
Confidence 999999765543
No 20
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.90 E-value=2.4e-20 Score=236.14 Aligned_cols=441 Identities=13% Similarity=0.180 Sum_probs=288.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccc
Q 000819 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1268)
Q Consensus 634 ~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~ 713 (1268)
..++++++++++|+.+.++. .++..++.+.++++.++|++.++|.++|+ ...+-..+++|++|||
T Consensus 270 ~a~~ial~lV~i~l~~~fr~--------------~~lia~ial~~~v~~~l~~l~l~g~~l~l-~siaglil~iGi~Vd~ 334 (755)
T PRK13024 270 IAGIIGFALIFLFMLVYYGL--------------PGLIANIALLLYIFLTLGALSSLGAVLTL-PGIAGLVLGIGMAVDA 334 (755)
T ss_pred HHHHHHHHHHHHHHHHHHhh--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHHHhC
Confidence 34678888888888776542 37788888999999999999999999997 5666777889999999
Q ss_pred eehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 714 MCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVAL 792 (1268)
Q Consensus 714 ~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpal 792 (1268)
.++++++++++ +++.+.++++.++.++.+.+++.|++|++++|+.+.+...+++|.|++..++|++++++..+++.|++
T Consensus 335 ~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~lTTii~~lpL~~~g~g~~~~faitl~~Gli~s~~~sl~v~p~l 414 (755)
T PRK13024 335 NVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSNITTLIAAAILFFFGTGPVKGFATTLIIGILASLFTAVFLTRLL 414 (755)
T ss_pred cEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 57788999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHhhhcccccCcccccccccCCCCcC-CCCCc-ccccchhHHH--HH-H------------HhhhccccCCccccccCC
Q 000819 793 IVFDFLRAEDKRVDCIPCLKLSSSYAD-SDKGI-GQRKPGLLAR--YM-K------------ALCTRIEPGLEQKIVLPR 855 (1268)
Q Consensus 793 L~l~~rr~~~~r~d~~~c~~~~~~~~~-~~~~~-~~~~~~~L~r--~~-k------------~~~~~I~~gldq~~~lP~ 855 (1268)
+.+..++. .++..... ....... ..... ....-.++++ ++ . .....++.|.|
T Consensus 415 ~~~~~~~~-~~~~~~~~---~~kk~~~~~~~~~~~~~~~df~~~rk~~~~iS~ili~~~l~~~~~~Gln~giD------- 483 (755)
T PRK13024 415 LELLVKRG-DKKPFLFG---VKKKKIHNINEGVTIFDRIDFVKKRKWFLIFSIVLVIAGIIIFFIFGLNLGID------- 483 (755)
T ss_pred HHHhhccC-cccccccc---cchhhhhccccccccCccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccc-------
Confidence 99876654 22211111 1100000 00000 0000012211 00 0 00111222221
Q ss_pred CchhhhHHHHHhhhccCCCCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHH
Q 000819 856 DSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLV 935 (1268)
Q Consensus 856 dSyl~~yf~~~~~~~~~g~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~ 935 (1268)
|.+|..+.+-.++ + .+.+ ++.+.++..
T Consensus 484 --------------F~GG~~~~v~~~~-~-~~~~---------------~vr~~l~~~---------------------- 510 (755)
T PRK13024 484 --------------FTGGTRYEIRTDQ-P-VDLE---------------QVRADLKEL---------------------- 510 (755)
T ss_pred --------------cCCcEEEEEEcCC-C-CCHH---------------HHHHHHHhc----------------------
Confidence 4445443333221 0 0000 011111100
Q ss_pred hhcccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCcccc
Q 000819 936 WISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCA 1015 (1268)
Q Consensus 936 ~l~~~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~ 1015 (1268)
+. ++. ++ ..
T Consensus 511 --~~-----------------------------------------------------~~~-----~v----~~------- 519 (755)
T PRK13024 511 --GL-----------------------------------------------------GEV-----NI----VT------- 519 (755)
T ss_pred --CC-----------------------------------------------------CCc-----eE----EE-------
Confidence 00 000 00 00
Q ss_pred CCCCCCccccccccCCCCceEEEEEEEEEecccCchhh-HHHHHHHHHH-HHHhhcccCCceeeeccceeehhHHHHHHH
Q 000819 1016 KGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQID-YVNSMRAARE-FSSRVSDSLQMEIFPYSVFYMYFEQYLDIW 1093 (1268)
Q Consensus 1016 ~gg~~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d-~~~~~~~~~~-i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~ 1093 (1268)
.|+ ++.. .+.++. ......++ -.+..+++++ +.+.+.. ...+....|+ .--..+.
T Consensus 520 ~~~-------------~~~~---~~i~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~Vgp-----~~g~~~~ 576 (755)
T PRK13024 520 FGS-------------DNNQ---VLVRTY-GILSDDEEADTEIVAKLKNALKNDKGG-TIPSSETVGP-----TVGKELA 576 (755)
T ss_pred ecC-------------CCcE---EEEEEc-CCCCcchhhhHHHHHHHHHHhhhhccc-ceeEEEEECH-----hhHHHHH
Confidence 000 0000 011110 00000010 0111122221 1111110 0011222222 2224466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh
Q 000819 1094 RTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS 1173 (1268)
Q Consensus 1094 ~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~ 1173 (1268)
+..+..+++|+++|++.+++-+ .|+.++..+++++.-++.++|+|.++|+++|..++..+++.+|++||++|++..|++
T Consensus 577 ~~~~~a~~~a~~~i~iyi~~rF-~~~~~~~aiial~~dvii~~g~~~l~~~~~~~~~iaall~iiGysvndtIvi~dRir 655 (755)
T PRK13024 577 RNAIIAVLIALIGILLYILIRF-EWTFSLGAILALLHDVLIVIGFFSLFRLEVDLTFIAAILTIIGYSINDTVVVFDRIR 655 (755)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcceEcHHHHHHHHHHHhheeeceEEEEhHHH
Confidence 6777788888888888887777 788899999999999999999999999999999999999999999999999999998
Q ss_pred ccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1174 VSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1174 ~~~-----~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
++. ++..+.+..++.+++...+.+. +||++++++|.+.....++.|-+.| ++.+++|...++++.+.++.+++
T Consensus 656 E~~~~~~~~~~~~~v~~si~~tl~rti~ts-~tt~~~~~~L~~~g~~~i~~fa~~l-~iGii~g~~ssifia~~l~~~~~ 733 (755)
T PRK13024 656 ENLRLYKKKDLREIVNKSINQTLSRTINTS-LTTLLVLLALLIFGGSSLRNFSLAL-LVGLIVGTYSSIFIAAPLWLDLE 733 (755)
T ss_pred HHhhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 3667899999999999988876 6999999999998888899885444 45678889999888766666665
Q ss_pred CC
Q 000819 1249 PP 1250 (1268)
Q Consensus 1249 p~ 1250 (1268)
.+
T Consensus 734 ~~ 735 (755)
T PRK13024 734 KR 735 (755)
T ss_pred hh
Confidence 43
No 21
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.90 E-value=1.2e-20 Score=248.83 Aligned_cols=189 Identities=14% Similarity=0.074 Sum_probs=147.1
Q ss_pred HHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 000819 1054 YVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVV 1133 (1268)
Q Consensus 1054 ~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v 1133 (1268)
..++.++++++.++++ .|+++...|.. ++...........+++|+++|++++.+.|+|++.+++++++++++++
T Consensus 831 ~~~~~~~i~~~~~~lP--~g~~~~~~G~~----~~~~~~~~~l~~~~~~ai~li~lvl~~~F~S~~~plii~~~iPl~l~ 904 (1032)
T PRK09577 831 SGEAMAAIERIAATLP--AGIGYAWSGQS----FEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVI 904 (1032)
T ss_pred hHHHHHHHHHHHHhCC--CCcEEEeccHH----HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHhhHHHH
Confidence 4455566666655543 46665544421 22222333455677889999999999999999999999999999999
Q ss_pred HHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1134 DLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1210 (1268)
Q Consensus 1134 ~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~---~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~ 1210 (1268)
+.+..+++.|.+||..+++.+++.+|+.|+++|+++.... +++.++.+++.+|-++-.+||+.++ +|+++|++||+
T Consensus 905 G~~~~l~l~g~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~~~~G~~~~~Ai~~a~~~R~RPIlmTt-ltti~gllPla 983 (1032)
T PRK09577 905 GAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVAQRMSLADAALEAARLRLRPIVMTS-LAFGVGVLPLA 983 (1032)
T ss_pred HHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEEeHHHHHHHHcCCCHHHHHHHHHHHhHhhHHHHH-HHHHHHHHHHH
Confidence 9999999999999999999999999999999999994443 3345889999999999999999997 69999999999
Q ss_pred cccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 000819 1211 FSRTEVFVVYY--FQMYLALVLLGFLHGLVFLPVVLSVFGP 1249 (1268)
Q Consensus 1211 fs~~~i~~~f~--f~m~~~~v~~~~l~~Li~LPvlLs~~gp 1249 (1268)
|+...-.+.+. ....+..+++|.+.+|+++|+++.++.+
T Consensus 984 ~~~g~g~~~~~pla~~iigGL~~sT~lTL~vvP~ly~l~~~ 1024 (1032)
T PRK09577 984 FASGAASGAQIAIGTGVLGGVITATVLAVFLVPLFFVVVGR 1024 (1032)
T ss_pred HccCCChHHhcCchhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 98654333221 1223345778888999999999999844
No 22
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.90 E-value=2e-20 Score=246.19 Aligned_cols=199 Identities=14% Similarity=0.178 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1132 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~ 1132 (1268)
+..++++.++++.++. -+.|+++...|. +++......+....+++++++|++++.+.|+|++..+++++++++.+
T Consensus 808 ~~~~~~~~i~~~~~~~-lP~g~~~~~~G~----~~~~~~~~~~l~~~~~~ai~li~lil~~~f~S~~~pliI~~~iPla~ 882 (1017)
T PRK09579 808 SMGEAIETVQQIAREE-APEGFAFDYAGA----SRQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSI 882 (1017)
T ss_pred CHHHHHHHHHHHHHhh-CCCCcEEEeech----HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3345555555544431 123555433332 23322233778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhh---hcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1133 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVS-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208 (1268)
Q Consensus 1133 v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f---~~~-~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~v 1208 (1268)
++.+..+++.|.+||..+++.+++.+|+.|+++|.++..+ +++ +.++.+++.+|.++-.+||+.++ +||++|++|
T Consensus 883 ~G~~~~L~i~~~~l~~~s~~G~i~L~GivVnnaIllvd~~~~~r~~~G~~~~~Ai~~a~~~R~RPIlmTt-lTti~gllP 961 (1017)
T PRK09579 883 CGALIPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHEQGLSRREAIEEAAAIRLRPVLMTT-AAMVFGMVP 961 (1017)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCcEEehHHHHHHHHhcCCCHHHHHHHHHHHhhhHHHHHH-HHHHHHHHH
Confidence 9999999999999999999999999999999999888543 323 45889999999999999999997 699999999
Q ss_pred hhcccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccchhh
Q 000819 1209 LCFSRTEVFVVYY--FQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCMLVE 1257 (1268)
Q Consensus 1209 L~fs~~~i~~~f~--f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~~~~~ 1257 (1268)
|++..+.-.+.+. ....+..+++|.+.+|+++|+++.++.++.+...++
T Consensus 962 la~~~g~g~~~~~plA~~iigGL~~st~ltL~~iP~ly~l~~~~~~~~~~~ 1012 (1017)
T PRK09579 962 LILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCIYTLLAKPDAAPGVA 1012 (1017)
T ss_pred HHHhcCCChHHhCCceeeeehHHHHHHHHHHHHHHHHHHHHhhcccCcchh
Confidence 9998644222210 112234577888999999999999998777655443
No 23
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.90 E-value=5.2e-20 Score=242.90 Aligned_cols=191 Identities=15% Similarity=0.070 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIV 1132 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~ 1132 (1268)
+..++.+.++++.++++ .|+++...|. +++...........+++++++|++++.++|+|++.++++++++++++
T Consensus 836 ~~~~~~~~v~~~~~~lP--~g~~~~~~G~----~~~~~~~~~~~~~~~~~ai~lv~lvL~~~f~s~~~pliI~~~IPls~ 909 (1049)
T PRK15127 836 STGEAMELMEELASKLP--TGVGYDWTGM----SYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGV 909 (1049)
T ss_pred CHHHHHHHHHHHHHhCC--CCcEEEeccH----HHHHHhccccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 34445555555554443 3555543432 12211111233445677888999999999999999999999999999
Q ss_pred HHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhh----ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1133 VDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS----VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208 (1268)
Q Consensus 1133 v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~----~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~v 1208 (1268)
++.+..|+++|.+||.+|++.+++.+|+.||++|+++.... +++.++.+++.+|.++..+||+.++ +||++|++|
T Consensus 910 ~Ga~~~l~~~g~~l~~~sl~Gli~l~GivV~naIvlvd~~~~~~~~~G~~~~~Ai~~a~~~R~rPIlmTt-lTti~gllP 988 (1049)
T PRK15127 910 IGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLEAVRMRLRPILMTS-LAFILGVMP 988 (1049)
T ss_pred HHHHHHHHHhCCCccHHHHHHHHHHHHHHHcCeEEEeHHHHHHHHhcCCCHHHHHHHHHHHhhhhHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999994443 2345889999999999999999997 799999999
Q ss_pred hhcccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1209 LCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1209 L~fs~~~i~~~f--~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
|++..+.--+.+ .....+..+++|.+.+|+++|+++.++...
T Consensus 989 l~l~~G~g~~~~~plai~ii~GL~~St~ltL~~vP~ly~~~~~~ 1032 (1049)
T PRK15127 989 LVISSGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRR 1032 (1049)
T ss_pred HHhcCCCCHHHhcCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999875433322 123344567889999999999999998443
No 24
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=99.88 E-value=5.9e-19 Score=229.72 Aligned_cols=772 Identities=15% Similarity=0.151 Sum_probs=431.5
Q ss_pred HHHhchhhhccchHHHHHHHHHHHHHhhcccccee--ccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEeccCC
Q 000819 374 YRKYGKWVARNPTLVLSLSMALVLLLCLGLIRFEV--ETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIPDT 451 (1268)
Q Consensus 374 f~~~g~~var~P~~vl~~~llv~~~l~~Gl~~i~~--etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~~~~ 451 (1268)
+.++|+|++||||.+|++|+++++++..-...+.. ..+.. .-.|++.++....+...+.|....+-.-++++..
T Consensus 3 ~~~~~r~i~r~~~~vi~~Wi~~~~~~~~~~p~l~~~~~~~~~-~~~p~~~~s~~a~~~~~~~f~~~~~~~~~ivv~~--- 78 (937)
T COG2409 3 LFPIGRFIRRFAWAVILAWIALAVVLNLFAPTLEALGQDKSV-ALLPDDAPSLVAMKLIGQAFNESDSSSAAIVVLE--- 78 (937)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccc-ccCCCCchHHHHHHHHhhhccCCCCCceEEEEEc---
Confidence 34599999999999999999999998887776543 23333 3368888888777776666665333333444432
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCccccccccc
Q 000819 452 THGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEHVKYCFQ 531 (1268)
Q Consensus 452 ~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~l~~~~~ 531 (1268)
++.-++++--+...++.+.+++++. +..++.|.-..|. ....
T Consensus 79 ----~~~~l~~~d~~~~~~~v~~L~~~~~----~~~~~~d~~~~~~-----------------~~~~------------- 120 (937)
T COG2409 79 ----ADEGLTDADHALYDKLVDALRADTR----DVNVVQDFVSDPL-----------------TAEL------------- 120 (937)
T ss_pred ----CCCCCChhHHHHHHHHHHHHhhccc----ccceecccCCCcc-----------------cccc-------------
Confidence 1223555555555566666665432 1112222211000 0000
Q ss_pred ccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhccccccCCCe
Q 000819 532 HYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQSKNL 611 (1268)
Q Consensus 532 ~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~~~~l 611 (1268)
..+. .+.. +... ........ ..+..+. .+.. ++...+...++++
T Consensus 121 -~~s~------------d~~a-----------~~~~-~~~~~~~~------~~~~~es-~~~v----~~~v~~~~~~~~~ 164 (937)
T COG2409 121 -AQSK------------DGKA-----------AYAQ-LTLAGYLG------VTQANES-VEAV----RSIVRQLPAPDGL 164 (937)
T ss_pred -ccCc------------chhh-----------hhcc-eeeeeccC------cchhHHH-HHHH----HHHhcccCCCCce
Confidence 0000 0000 0000 00011100 0111111 1222 2222211245678
Q ss_pred EEEEccchhHHHHHHhhhchhhHH-HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhh
Q 000819 612 TLAFSSESSIEEELKRESTADAIT-IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI 690 (1268)
Q Consensus 612 ~v~f~~~~sl~del~~~s~~d~~~-~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~ 690 (1268)
+.+-.|.....+.+...+..+... ..++..++++++.+++|+ +..++++++.+.+++..+.|+..++
T Consensus 165 ~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s------------~i~a~lpL~t~~~s~~~a~~iv~~l 232 (937)
T COG2409 165 TAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRS------------VITAFLPLITVGLSLLVAQGIVALL 232 (937)
T ss_pred EEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887766666666666655554 345555555555555554 3458899999999999999998855
Q ss_pred cc----ccchhhhhHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCch
Q 000819 691 GV----KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1268)
Q Consensus 691 Gi----~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p 765 (1268)
.. .++.....++..+.+|+|+||++.++.||+++ +.+.+.++++.++++.+|+.++.++.|.+++|..+.+.++|
T Consensus 233 ~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg~tV~~a~~~l~~a~~~ 312 (937)
T COG2409 233 AYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSGLTVAIALLGLSFARLP 312 (937)
T ss_pred HhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhhhHHHHHHHHHHhcccc
Confidence 33 23334566777889999999999999999986 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCcccccchhHH--HHH-----HH
Q 000819 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA--RYM-----KA 838 (1268)
Q Consensus 766 ~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~L~--r~~-----k~ 838 (1268)
..+.+++.++++|+++.+..+|+.||++++.+||..... +..+.....+......-.+.|.... -.. ..
T Consensus 313 ~~~s~g~~~ai~V~va~l~slTllPAll~llg~~~~~~~----~~~~~~~~~w~~~~~~v~~~P~~~l~~s~~ill~~~l 388 (937)
T COG2409 313 FLKTLGIAAAIGVAVAVLAALTLLPALLALLGRRGFWPD----PKRASESRFWRRVGTLVVRRPLAILVASLAILLVLAL 388 (937)
T ss_pred hhhhchhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcCC----cchhhhcchhhhheeEEeeccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998863220 1111111000000000011121111 000 03
Q ss_pred hhhccccCCccccccCCCchhhhHHHHHhhhccCC--CCEEEEEec-CCCCchhHhhhhhhcccccCcchHHHHHHHhcc
Q 000819 839 LCTRIEPGLEQKIVLPRDSYLQGYFNNISEHLRIG--PPLYFVVKN-YNYSSESRQTNQLCSISQCDSNSLLNEISRASL 915 (1268)
Q Consensus 839 ~~~~I~~gldq~~~lP~dSyl~~yf~~~~~~~~~g--~pvy~Vv~~-~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~ 915 (1268)
..+.++.|.+.+..+|.+.+.++-|+.++++|+.| .|.+++++. .|..++.... ++ +...+.+.+...
T Consensus 389 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~Fg~g~~~P~~v~i~~~~~~r~~~~~a-~i--------~~~~~~i~~v~g 459 (937)
T COG2409 389 PLPLVRLGYDDRKTLPSSNPSRKGYAAADRHFGQGRLAPEIVLIESDHDLRTPAALA-DI--------DKIAKAIAAVPG 459 (937)
T ss_pred HhcccccCCcchhhccCccchhhHHHHHhhhccccccCCceEEecchhhhcChHHHH-HH--------HHHHHHHHhccc
Confidence 45789999999999999999999999999999866 589999984 4433332110 00 111111221111
Q ss_pred CCCCccccCCCCCcHHH-HHHhhcc--------ccccc-ccccCCCCCCCCCCCCCCCCCCCCCCCCC-Cc--ccCCCcc
Q 000819 916 IPQSSYIAKPAASWLDD-FLVWISP--------EAFGC-CRKFTNGSYCPPDDQPPCCPSGQSSCGSA-GV--CKDCTTC 982 (1268)
Q Consensus 916 ~~~~s~i~~~~~sWldd-f~~~l~~--------~~~~c-c~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~c~~c 982 (1268)
....-.+.+|...-++| ...|-.. ..... -+.......-|. +......+++..-... .. ..+-..-
T Consensus 460 v~~v~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 538 (937)
T COG2409 460 VRRVRAATRPNGKPLDDASISFQAGMLGDQLGQSAKFLADRLLDILSLGPA-DLSTSDGLERLRAELQQLLDGAHDMSGI 538 (937)
T ss_pred eeeeeeeeccCCcccccccccccchhhhhhhhccccccchHHHHHHhhchh-HHHHHHHHHHHHHHHHHHhhccccccch
Confidence 11111111221111111 1111000 00000 000000000000 0000000000000000 00 0000000
Q ss_pred -cccCC-cCCCCCChhHHHhhHH-----------------------------------------------------HHHh
Q 000819 983 -FHHSD-LLKDRPSTIQFKEKLP-----------------------------------------------------WFLN 1007 (1268)
Q Consensus 983 -~~~~~-~~~~~P~~~~F~~~L~-----------------------------------------------------~fl~ 1007 (1268)
..-.. ....+-..+++.++++ .+++
T Consensus 539 ~~~v~~~~~~~~d~~~~~~d~~~~v~~~i~~~~~~~~~~v~~s~r~~l~~~~~~~~lt~~~~~g~~~~~~~~g~~~~~l~ 618 (937)
T COG2409 539 TVAVGGATALLRDSDADLTDFLPPVVSIIVGITFCLLIPVCRSFRSPLKALLTALQLTVQAATGALVVSALDGTLPQVLA 618 (937)
T ss_pred hHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00000 0000000011111110 1111
Q ss_pred cCCCccccC-------------CCCCCcc--------------------c------------cccccCC-------CCce
Q 000819 1008 ALPSASCAK-------------GGHGAYT--------------------N------------SVDLKGY-------ENGI 1035 (1268)
Q Consensus 1008 ~~p~~~c~~-------------gg~~~y~--------------------~------------~v~~~~~-------~~~~ 1035 (1268)
..| |+. |....|. . .+....+ -...
T Consensus 619 ~~p---~p~~~~~~~l~~~~~fg~~~~~~if~v~~~~~~~~~~~~~~~~~~~~~d~~~~p~~~~~~~~~~~~~~~~~s~~ 695 (937)
T COG2409 619 LLP---GPLISTMPALRIAALFGLSTDYEIFLLSRQREELAAAMGQAFDTASTDDSFYLPPEAFANGDFQKGRKITASAD 695 (937)
T ss_pred cCC---cchHHHhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhccccCccccCCHHhcCChhhhHHHHHHhccC
Confidence 111 110 0001111 0 0000000 0122
Q ss_pred EEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccC---CceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1036 VQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSL---QMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCL 1112 (1268)
Q Consensus 1036 I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~---~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ 1112 (1268)
+.+.+|-.+|..-....+.+...+++...+++.-... +..++..|..-.+.+-++...++........++.+|+++.
T Consensus 696 i~~~~~~v~~~~~~~~~~~~~~~~~i~~~~da~i~~~~Lv~a~~~l~G~~a~~~d~~~~~~~d~~~~~i~~~~~i~ii~~ 775 (937)
T COG2409 696 GMAARFVVFHFGDPASTAAIGRILAIAVAADAAIKRTPLVPAKIYLGGTAAWWLDIRDWLTHDLPLVVIITLCLIFIILL 775 (937)
T ss_pred CceEEEEEEecCCcccHHHHHHHHHHHHHHHHhccCCcccCCEEEEechHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556777766433333344444444444444432211 2345555555555566556666667777777889999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHH-----HHHhccccchH-HHHHHHHhhceeecceeeeehhhhccC--CCHHHHHH
Q 000819 1113 ITTCSFWSSAIILLVLTMIVVDLMGV-----MAILKIQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVSS--GDKNQRMK 1184 (1268)
Q Consensus 1113 ll~~s~~~~li~~~~i~~~~v~~~G~-----M~l~gi~LN~v-S~v~l~iaiGi~VDfsiHi~~~f~~~~--~~~~~r~~ 1184 (1268)
+.+++...++..+.++....+..+|+ ...+|.++... -.+..++-+.+++||-+-+..|++++. +.+.+ +.
T Consensus 776 i~~rs~~~~~~li~~v~~s~~~a~~l~~~~~~~~lg~~~~w~vp~~~f~~L~avG~dY~~~li~r~ree~~~g~~~~-ii 854 (937)
T COG2409 776 ILLRSVVAPAVLVGTVLLSYGAALGLSVLIWQHILGIELHWLVPALSFVVLLAVGSDYNILLISRLREEIGAGLRTG-II 854 (937)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhhhhhhhhhhhcCcceeeehHHHHHHHHHHcCchHHHHHHHHHHHHhccccchh-hh
Confidence 99999999988888777777666554 56677776664 344455666777799999998898875 34555 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 000819 1185 EALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1254 (1268)
Q Consensus 1185 ~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~~ 1254 (1268)
.|.+++|.-+...+ +.....+..|.+++....+.-.+.+.+.+++-.++.-.++.|++..++|...-.+
T Consensus 855 ~a~~~tg~Vit~ag-~i~~~t~~~l~~s~~~~l~qig~~i~~g~l~dt~v~r~~~vPa~~~l~~~~~wwp 923 (937)
T COG2409 855 RAMRGTGGVITAAG-LIFAATMASLVFSDLRVLGQIGTTIGLGLLLDTLVVRPFMVPAIAALLGRWNWWP 923 (937)
T ss_pred hhhccCCchHHHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhccCC
Confidence 99999999998655 4667788899999887777665566667788888889999999999987765544
No 25
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=99.88 E-value=2.4e-20 Score=243.56 Aligned_cols=179 Identities=22% Similarity=0.228 Sum_probs=151.3
Q ss_pred CCeEEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHH
Q 000819 609 KNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 609 ~~l~v~f~~~~sl~del~~~s~~d~~~~-~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~ 687 (1268)
++.+++.+|...+..++.+..+.|+..+ .++++++++.+.+.+|+ +...+..++.+++++.+++|++
T Consensus 722 ~~~~~~vtG~~~~~~d~~~~~~~d~~~~~~~~~~~i~liL~~~fRS------------~~~pl~~l~~v~ls~~~s~G~~ 789 (910)
T TIGR00833 722 EPAKVELAGVSAVNRDLRDLVNSDLGLISIITLAIVFMILALLLRA------------PVAPIVLIGSVALSYLWALGLS 789 (910)
T ss_pred CCCEEEEeChhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999998888888864 56777777777777665 3457888999999999999999
Q ss_pred Hhhccc-----cchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc
Q 000819 688 SAIGVK-----STLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI 762 (1268)
Q Consensus 688 ~~~Gi~-----~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s 762 (1268)
.+++.+ ++..+..+++.+++|+|+||.+|+++||+++... ..++++.++++++|++|+.+++|++++|+++.++
T Consensus 790 ~~~~~~~~g~~l~~~~~~~~~~il~glgvDY~I~l~sR~ree~~~-g~~~av~~a~~~tg~~I~~a~~~~~~~f~~l~~s 868 (910)
T TIGR00833 790 VLAFQHILGAELHWSVLAGVFVLLVALGVDYNMLLVSRIKEESPA-GNRTGIIRALGSTGGVITAAGLVFAGTMAALASA 868 (910)
T ss_pred HHHHHhhcCCCcchhHHHHHHHHHHHhhhchHHHHHHHHHHHHhc-CccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhc
Confidence 886544 3332334567788999999999999999998632 3578999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcc
Q 000819 763 PMPACRVFSMFAALAVLLD-FLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 763 ~~p~vr~F~i~aa~~v~~~-~l~~lt~fpalL~l~~rr~ 800 (1268)
++|.+++||+..++||+++ ++..+++.||++.+.+|+-
T Consensus 869 ~~~~l~~~G~~~a~gvl~~a~~v~~~l~Pall~l~g~~~ 907 (910)
T TIGR00833 869 QLTAIAQFGFTVGVGILLDTFIVRSVTVPALTLLLGRWI 907 (910)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999996 6667889999999988763
No 26
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.87 E-value=3.2e-20 Score=217.28 Aligned_cols=194 Identities=22% Similarity=0.390 Sum_probs=164.6
Q ss_pred HHHHHHHHHhhccccccCCCeEEEEccchhHHHHHHhhhchhhHHH-HHHHHHHHHHHHHHhCCCCCCccccccccchhh
Q 000819 591 EKAFVQLAKDELLPMVQSKNLTLAFSSESSIEEELKRESTADAITI-VISYLVMFAYISLTLGDTPHLSSFYISSKVLLG 669 (1268)
Q Consensus 591 E~~~~~~~~~~~~~~~~~~~l~v~f~~~~sl~del~~~s~~d~~~~-~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~ 669 (1268)
-+++.+.+++.. ..++.+++..|...+..++.+....|...+ .++++++++.+.+.+|+ +..+
T Consensus 107 ~~~i~~~i~~~~----~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs------------~~~~ 170 (333)
T PF03176_consen 107 VKAIRDIIKEAE----KPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRS------------VRAA 170 (333)
T ss_pred HHHHHHHHHHhh----ccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHH------------HHHH
Confidence 345555555543 367899999999999999988888887764 56777777777777665 3467
Q ss_pred hHHHHHHHHHHHHHHHH----HHhhccccchhhhhHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhH
Q 000819 670 LSGVVLVMLSVLGSVGF----FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPS 744 (1268)
Q Consensus 670 l~gvl~v~~sv~~s~Gl----~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~s 744 (1268)
+.+++++++++++++|+ +.++|.+++.++..++..+++|+|+||.+|++++|+++ .++.+.++++.++++++|++
T Consensus 171 l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~ 250 (333)
T PF03176_consen 171 LLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRA 250 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCch
Confidence 89999999999999999 44567788764445556688999999999999999987 46788999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000819 745 ITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 745 i~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~ 800 (1268)
++++++|+++||+++.++++|++|+||+.+++|+++++++.+|++||++.+.+|+.
T Consensus 251 i~~s~ltt~~gf~~L~~s~~~~~~~~G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 251 ILLSALTTAIGFGSLLFSPFPPLRQFGLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred hHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 99999999999999999999999999999999999999999999999999988774
No 27
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.84 E-value=1.6e-17 Score=209.38 Aligned_cols=437 Identities=14% Similarity=0.133 Sum_probs=272.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccccee
Q 000819 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (1268)
Q Consensus 636 ~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~ 715 (1268)
++++.+++++|+.+.+|. .|+...+.+.+.++.++|++.++|.++|+ +...--.+.+|++||+.+
T Consensus 378 liig~ilV~l~m~lfyr~--------------~glia~ial~~~vl~~l~~l~l~g~tLnl-~~IaGiil~IGm~VD~~I 442 (855)
T PRK14726 378 GLIAAILVAALMIGFYGF--------------LGVIAVIALIVNVVLIIAVLSLLGATLTL-PGIAGIVLTIGMAVDSNV 442 (855)
T ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhCcceeH-HHHHHHHHHHHhhhCceE
Confidence 456666666666655431 37788888899999999999999999997 344444567788999999
Q ss_pred hHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (1268)
Q Consensus 716 ~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~ 794 (1268)
++..+.+++ +.+.++.+++..+.++++.+++.+++|++++|+.+.+.+-.++|.|++..++|++++++..+++.|+++.
T Consensus 443 VI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~lTTlia~lpL~~~g~~~ikgFAvtl~igii~Sl~~Al~vtp~l~~ 522 (855)
T PRK14726 443 LIYERIREEEKTGHSLIQALDRGFSRALATIVDANVTILIAAVILFFLGSGAVRGFAVTLAVGILTTVFTAFTLTRSLVA 522 (855)
T ss_pred EeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999886 5678999999999999999999999999999999998888889999999999999999999999999998
Q ss_pred HhhhcccccCcccccccccCCCCcCCCCCcccccchhHH-HHHH--------------HhhhccccCCccccccCCCchh
Q 000819 795 FDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLA-RYMK--------------ALCTRIEPGLEQKIVLPRDSYL 859 (1268)
Q Consensus 795 l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~L~-r~~k--------------~~~~~I~~gldq~~~lP~dSyl 859 (1268)
+..++...++...- ..+. . .....-.+++ |... .+...++.|.
T Consensus 523 ~~l~~~~~~~l~~~-~~~~---~------~~~~~~dfv~~rk~~~~iS~ili~~si~~~~~~Gln~GI------------ 580 (855)
T PRK14726 523 VWLRRRRPKHLPKG-VRTG---L------FEGANIRFMGIRRYVFTLSAALSLASLVLFATVGLNLGI------------ 580 (855)
T ss_pred HHhcccCccccchh-hhhc---c------ccCCccchhhhHHHHHHHHHHHHHHHHHHHHhcCCcCce------------
Confidence 76544322222110 0000 0 0000001221 1100 0111111221
Q ss_pred hhHHHHHhhhccCCCCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhcc
Q 000819 860 QGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISP 939 (1268)
Q Consensus 860 ~~yf~~~~~~~~~g~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~ 939 (1268)
.|.+|.-+.+-.+..+.. .+ .+.+.+++. . + +... ++
T Consensus 581 ---------DFtGGt~i~v~~~~~~~~-~~---------------~vr~~l~~~------~-~-~~~~---------vq- 617 (855)
T PRK14726 581 ---------DFTGGSLIEVRAKQGNAD-IA---------------DIRARLNEL------N-L-GEVQ---------VE- 617 (855)
T ss_pred ---------EecCceEEEEEecCCCCC-HH---------------HHHHHHHhc------C-C-CCce---------EE-
Confidence 233443222221111111 00 011111100 0 0 0000 00
Q ss_pred cccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCccccCCCC
Q 000819 940 EAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGH 1019 (1268)
Q Consensus 940 ~~~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~ 1019 (1268)
. .|+
T Consensus 618 ---------------------------------------------------------~------------------~~~- 621 (855)
T PRK14726 618 ---------------------------------------------------------R------------------FGS- 621 (855)
T ss_pred ---------------------------------------------------------E------------------ecC-
Confidence 0 000
Q ss_pred CCccccccccCCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCc-eeeeccceeehhHHHHHHHHHHHH
Q 000819 1020 GAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-EIFPYSVFYMYFEQYLDIWRTALI 1098 (1268)
Q Consensus 1020 ~~y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~-~v~~~~~~~v~~eq~~~i~~~~~~ 1098 (1268)
++ .+ ..++.... ...++..+..+. +.+.+.+..+. +.-..|+. +. ..+.+..+.
T Consensus 622 ------------~~-~~---~ir~~~~~-~~~~~~~~~~~~---l~~~l~~~~~~~~~~~VGp~--vG---~el~~~ai~ 676 (855)
T PRK14726 622 ------------PR-DA---LIRIASQD-GGENAEQSAVTL---VRGELEDDYDFRRVEVVGPA--VS---GELTMAATL 676 (855)
T ss_pred ------------Cc-eE---EEEEccCC-ccchhhHHHHHH---HHHhhhcccccceeeeeCcc--HH---HHHHHHHHH
Confidence 00 00 01110000 000000011111 11112111111 11112221 11 335566777
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccC--
Q 000819 1099 NLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-- 1176 (1268)
Q Consensus 1099 ~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~-- 1176 (1268)
.+++|+++|++-+++-| .|+.++..++++..=++.++|+|+++|+++|..+++.+++.+|++|+++|++..++++..
T Consensus 677 Al~iAli~IliYI~~RF-~~~fa~~avial~hDv~i~~g~~~l~g~~ls~~~iaglLtliGysvndtIVi~DRIrE~~~~ 755 (855)
T PRK14726 677 GVLAALAAILIYIWIRF-EWQFAVGAIIATLHDVILTLGLFVLTGIEFNLTSIAAILTIVGYSLNDTVVVYDRVRENLRR 755 (855)
T ss_pred HHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEehHHHHHHhh
Confidence 77778777776665555 577888888888888999999999999999999999999999999999999998887543
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000819 1177 ---GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1177 ---~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~ 1253 (1268)
.+..+.+..++.++..-++.++ +||++|+++|++...+..+.|- ..++..+++|.+.++++-+.++.+++.+.+.
T Consensus 756 ~~~~~~~~~~~~si~~tl~Rii~Ts-lTTll~llpL~l~G~~~i~~fa-i~li~Gli~gt~sSifvAspll~~~~~~~~~ 833 (855)
T PRK14726 756 YKKMPLPILIDASINQTLSRTVLTS-ATTLLALLALYLFGGEVIRSFT-FAMLFGVAVGTFSSIYIAAPVLIVFKLRPES 833 (855)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 1334556666666666677765 6999999999998777888774 3334568889999999999888888655444
Q ss_pred chh
Q 000819 1254 MLV 1256 (1268)
Q Consensus 1254 ~~~ 1256 (1268)
++.
T Consensus 834 ~~~ 836 (855)
T PRK14726 834 LDG 836 (855)
T ss_pred CCC
Confidence 443
No 28
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.84 E-value=4.1e-19 Score=236.12 Aligned_cols=184 Identities=17% Similarity=0.228 Sum_probs=142.9
Q ss_pred HHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000819 1058 MRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1137 (1268)
Q Consensus 1058 ~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G 1137 (1268)
.+..+++.+++.-+.|+++...| .+++......+....+++|+++|++++.+.|.|++..+++++++++.+++.+.
T Consensus 830 ~~~~~~~~~~~~lp~g~~~~~~G----~~~~~~e~~~~l~~~~~~al~liyliL~~~F~S~~~PliIm~~IPla~~G~~~ 905 (1021)
T PF00873_consen 830 SEAVKELLKELQLPPGYTIEFGG----EAEEMQESFSSLGFALILALLLIYLILAAQFESFRQPLIIMLTIPLALIGVLL 905 (1021)
T ss_dssp HHHHHHHHTTT-SSTTEEEEEEC----HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSSSTHHHHHTTHHHHHHHHHH
T ss_pred HHHHHhhhccccCCCCCcccCCc----hHHHHHhhhcchhhhHHHHHHHHHHHHHHHhcceeeeEEEEeccchhhHHHHH
Confidence 34444444443323344443222 22444555678888999999999999999999999999999999999999999
Q ss_pred HHHHhccccchHHHHHHHHhhceeecceeeeehhhh---c-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 1138 VMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFS---V-SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1213 (1268)
Q Consensus 1138 ~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~---~-~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~ 1213 (1268)
.+++.|.+||..+++.+++.+|+.|-++|.+...+. + ++.++.+++.+|.++=.+||+.++ +||++|++||+++.
T Consensus 906 ~l~i~g~~l~~~s~iG~i~L~GIvVnNaIllvd~~~~~~~~~g~~~~eAi~~a~~~RlRPIlmTt-lTti~G~lPla~~~ 984 (1021)
T PF00873_consen 906 GLFITGQPLSFMSLIGIIALIGIVVNNAILLVDFINELRKREGMPLEEAIIEAARSRLRPILMTT-LTTILGMLPLALGI 984 (1021)
T ss_dssp HHHHTTBEBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTT-
T ss_pred HHhhccccccccceehHHHHHHHHHhhhHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHH-hhhhcccccccccc
Confidence 999999999999999999999999999999985443 3 334688999999999999999997 69999999999987
Q ss_pred chh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1214 TEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1247 (1268)
Q Consensus 1214 ~~i---~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~ 1247 (1268)
+.- .+-. ...++..+++|.+.+|+++|+++.++
T Consensus 985 g~g~~~~~pl-a~~iigGL~~stllTL~vvP~ly~l~ 1020 (1021)
T PF00873_consen 985 GEGAEFWQPL-AIVIIGGLLFSTLLTLIVVPVLYSLF 1020 (1021)
T ss_dssp STTHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccCch-hhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 542 2222 12233456677888899999999875
No 29
>PF03176 MMPL: MMPL family; InterPro: IPR004869 Proteins of this entry are putative integral membrane proteins from bacteria. Several of the members are mycobacterial proteins. Many of the proteins contain two copies of this aligned region. The function of these proteins is not known, although it has been suggested that they may be involved in lipid transport [].; GO: 0016020 membrane
Probab=99.83 E-value=8.4e-20 Score=213.76 Aligned_cols=208 Identities=17% Similarity=0.267 Sum_probs=179.6
Q ss_pred EEEecccCchhhHHHHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Q 000819 1042 RTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSS 1121 (1268)
Q Consensus 1042 ~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~ 1121 (1268)
....+.-....+..+.++++++..++.....|.++...|..++..|....+.++.....+++++++++++++++||++.+
T Consensus 91 ~v~~~~~~~~~~~~~~~~~i~~~i~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~i~lvl~~~fRs~~~~ 170 (333)
T PF03176_consen 91 VVQLKGDPGSQEAQEAVKAIRDIIKEAEKPPGLKVYVTGSPAIAADIQEAIQHDLLRSGLLALLLIFLVLLLVFRSVRAA 170 (333)
T ss_pred EEEecCCcchhhHHHHHHHHHHHHHHhhccCCcEEEEECHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhHHHHHHHH
Confidence 33333333344556777888888888776678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH----HHHhccccchHH-HHHHHHhhceeecceeeeehhhhccC---CCHHHHHHHHHHHHHHH
Q 000819 1122 AIILLVLTMIVVDLMGV----MAILKIQLNAVS-VVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGAS 1193 (1268)
Q Consensus 1122 li~~~~i~~~~v~~~G~----M~l~gi~LN~vS-~v~l~iaiGi~VDfsiHi~~~f~~~~---~~~~~r~~~al~~~g~~ 1193 (1268)
+++++++.+.+++.+|+ |+++|+++|..+ .+..++.+|+++||++|+.++|+++. .+++++++++++++|.|
T Consensus 171 l~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~lgvgidy~i~l~~r~ree~~~g~~~~~ai~~a~~~~g~~ 250 (333)
T PF03176_consen 171 LLPLLPVLLSIVWTLGLVALLMGLLGIPLSWITPALVFVLLLGVGIDYSIHLINRYREELRRGMSRKEAIRRAVRSTGRA 250 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehHhhhhhHHHhhhhhHHHHHHHHHHHHHhccchHHHHHHHHhccCch
Confidence 99999999999999988 567788898754 45667899999999999999998874 47789999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1194 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1194 V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
++.++ +|+++||..|+|++.+.++.| +.+..+.++++++.+++++|+++.++|++.
T Consensus 251 i~~s~-ltt~~gf~~L~~s~~~~~~~~-G~~~~~gi~~~~l~~l~llPall~~~~~~~ 306 (333)
T PF03176_consen 251 ILLSA-LTTAIGFGSLLFSPFPPLRQF-GLLAAIGILIALLLSLTLLPALLSLLGRWR 306 (333)
T ss_pred hHHHH-HHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccc
Confidence 99887 699999999999999999998 455567788999999999999999999986
No 30
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.81 E-value=2.3e-17 Score=213.35 Aligned_cols=591 Identities=15% Similarity=0.153 Sum_probs=319.4
Q ss_pred CCCeEEE--EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLA--FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1268)
Q Consensus 608 ~~~l~v~--f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~G 685 (1268)
+.++++. |.....+.+-+++ -+.+++.+.++.++.+.+.|++++. ++++.+.+-++++.+++
T Consensus 309 P~gv~~~~~~D~t~~V~~si~~----v~~tL~~a~~lVv~Vi~lFL~~~ra------------tlI~~iaiPlsLlgtf~ 372 (1009)
T COG0841 309 PQGVDIAIPYDTTEFIKASIEE----VIKTLFEAIVLVVLVMYLFLGNLRA------------TLIPALAVPVSLLGTFA 372 (1009)
T ss_pred CCCcEEEEecCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhhcce------------eEEeeeechHHHHHHHH
Confidence 5565554 4444444444333 3345667777777777777777642 56677788899999999
Q ss_pred HHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcc-cCc
Q 000819 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSF-IPM 764 (1268)
Q Consensus 686 l~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~-s~~ 764 (1268)
+|.++|+.+|. ++...-.|.+|+=|||+|..+....|..++.++.+|..+++++++-+++.++++.+++|+-.+| ..+
T Consensus 373 ~m~~~GfslN~-lTL~aLiLAiGllVDDAIVVvENI~R~~~G~~p~~Aa~~a~~ei~~~via~TlvliaVF~Pi~f~~G~ 451 (1009)
T COG0841 373 VMYAFGFSLNT-LTLFALVLAIGLLVDDAIVVVENIERHMRGLPPREAAEKAMGEIGGAVIAITLVLIAVFLPMAFMGGS 451 (1009)
T ss_pred HHHHhCccchH-hHHHHHHHhhheeEeccEEEEeeEEeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999997 4444445666666899999987766633399999999999999999999999999999996654 445
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCcccccccccCCCCcCCCCCcccccchhHHHHHH-----
Q 000819 765 P--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYMK----- 837 (1268)
Q Consensus 765 p--~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~L~r~~k----- 837 (1268)
. -.|+|++..+++++++++..+|+-|++-+...|+..... ...-++. ...........+.-...|.+...
T Consensus 452 ~G~~f~~f~~tia~a~~~S~~vAltltP~L~a~lLk~~~~~~-~~~~~~~--~~~~~~~~~Y~~~l~~~L~~~~~~~~~~ 528 (1009)
T COG0841 452 TGELFRQFAITIAVAMLLSLLVALTLTPALCARLLKPVPPPK-GFFGWFN--RFFDRLEDRYQRGLRWVLRRRALVLLLY 528 (1009)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-chhhhhh--hhhhHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4 599999999999999999999999999886655433211 0000000 00000000000000111111000
Q ss_pred --------HhhhccccCC----cc-----ccccCCCchh---hhHHHHHhhhc---------------cC-----CCCEE
Q 000819 838 --------ALCTRIEPGL----EQ-----KIVLPRDSYL---QGYFNNISEHL---------------RI-----GPPLY 877 (1268)
Q Consensus 838 --------~~~~~I~~gl----dq-----~~~lP~dSyl---~~yf~~~~~~~---------------~~-----g~pvy 877 (1268)
++...+..++ |+ ..-+|+++.+ .+.-+.+++++ +. +.+..
T Consensus 529 l~~~~~~~~l~~~vp~~F~P~eD~g~~~v~~~~p~g~sl~~t~~~~~~ve~~~~~~~~~~v~~v~~~~G~g~~~~~~~~~ 608 (1009)
T COG0841 529 LVLLGGSVLLFLKLPKSFLPEEDQGEFMVQVQLPEGASLERTAEVVRQVEDWLLILEKPEVESVFTVVGFGSGQNNAGRA 608 (1009)
T ss_pred HHHHHHHHHHHHhCCCccCCcCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEeccCCCCCCcceE
Confidence 2334444443 11 1234555432 22223333321 11 12333
Q ss_pred EEE-ecCCCC----chhHhhhhhhc-ccccCcc-hHHHH---HHHhccCCCCc--c-ccCC----CCCcHHHHHHhhccc
Q 000819 878 FVV-KNYNYS----SESRQTNQLCS-ISQCDSN-SLLNE---ISRASLIPQSS--Y-IAKP----AASWLDDFLVWISPE 940 (1268)
Q Consensus 878 ~Vv-~~~d~~----~~~~~~~~ic~-~~~c~~~-sl~~~---i~~~~~~~~~s--~-i~~~----~~sWlddf~~~l~~~ 940 (1268)
++. ++.+.. ..+. .+++-. ..+-.+. ..... +.....-+... + +..+ ...|.......++..
T Consensus 609 ~~~Lk~~~er~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~g~d~~~l~~~a~~~~~~~~~~ 687 (1009)
T COG0841 609 FVSLKPWSERKENSAQAI-IARLTKELAKIPDATVFAFTPPAVDGLGQGSGFPFQLRDRGGDLEALRQAANQLLEKANQS 687 (1009)
T ss_pred EEecCChhhcccccHHHH-HHHHHHHhhcCCccceeccCCCccccCCCCCCccEEEEEeCCCHHHHHHHHHHHHHHHhhC
Confidence 333 331111 1100 000000 0000000 00000 00000000000 0 0011 112333333333221
Q ss_pred ccccccccCCCCCCCCCCCCCCCC-CCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCc-------
Q 000819 941 AFGCCRKFTNGSYCPPDDQPPCCP-SGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSA------- 1012 (1268)
Q Consensus 941 ~~~cc~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~------- 1012 (1268)
. -. .-+.++-++..+ ..+ .|+ +..-..|.. .++-.+-|...+....-.
T Consensus 688 p---~~-~v~~~~~~~~p~--l~i~iDr-----------------~ka~~lGvs-~~~I~~tL~~~~~g~~v~~~~~~~~ 743 (1009)
T COG0841 688 P---LL-NVRSDLLPDTPQ--LQVDIDR-----------------DKAAALGVS-LQDIAQTLQSALGGTYVNDFRDDGR 743 (1009)
T ss_pred C---Cc-cccCCCCCCCce--EEEEeCH-----------------HHHHHcCCC-HHHHHHHHHHHhCCCeeeeEecCCc
Confidence 0 00 000000000000 000 000 000001111 111111122111110000
Q ss_pred ------------------------cccCCCCCCcccccccc-CCCCceEEE-EEEEE--EecccCchhhHHHHHHHHHHH
Q 000819 1013 ------------------------SCAKGGHGAYTNSVDLK-GYENGIVQA-SSFRT--YHTPLNRQIDYVNSMRAAREF 1064 (1268)
Q Consensus 1013 ------------------------~c~~gg~~~y~~~v~~~-~~~~~~I~a-s~f~~--~~~~l~~~~d~~~~~~~~~~i 1064 (1268)
+-+.|+.-+.++-.+.. ......|.. -++++ ...++.......+++.+++++
T Consensus 744 ~~~V~~~~~~~~R~~~~~l~~l~v~~~~G~~vpLs~va~~~~~~~p~~i~r~n~~~svti~~~~~~g~s~g~a~~~v~~~ 823 (1009)
T COG0841 744 VYKVVVQADAEFRSDPEDLGKLYVRSADGAMVPLSAFATIRWEYGPPRIVRYNGLPSVTISGNLAPGVSSGDAMAAMEKL 823 (1009)
T ss_pred EEEEEEEcChhhcCCHHHHhceEEecCCCCEEechheEEEEEecCCCeEEeeCCceEEEEEEecCCCCCHHHHHHHHHHH
Confidence 00111111111111100 000001100 00111 011122212334555665555
Q ss_pred HHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 000819 1065 SSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKI 1144 (1268)
Q Consensus 1065 ~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi 1144 (1268)
+.+..-+.|+.+-..|. .++...........+++++++|++++...+.||+..+++++++++.+++.+..+.+.|.
T Consensus 824 ~~~~~lp~g~~~~~~G~----~~~~~~s~~~~~~~~~lai~~v~lvL~~qfeS~~~P~~Il~tvPla~iGa~~~L~l~g~ 899 (1009)
T COG0841 824 AAELPLPSGYTYEWSGE----SEQEKEAGGQALLLFALALLVVFLVLAAQYESFSIPFIVMLTVPLGLLGALLALLLTGL 899 (1009)
T ss_pred HhccCCCCceEEEecch----HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhHHHHHHHHHHHHhCC
Confidence 55543223555443432 35555666778888999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhceeecceeeeehhh---hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH-
Q 000819 1145 QLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY- 1220 (1268)
Q Consensus 1145 ~LN~vS~v~l~iaiGi~VDfsiHi~~~f---~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f- 1220 (1268)
++|..+++.+++-+||.+-++|.++..- ++++.++.|++.+|-+.=.+||+.++ +++++|++||+++.+.--+..
T Consensus 900 ~~~i~a~IGli~LiGiv~KNaIllVefa~~~~~~G~~~~eAiieA~~~RlRPIlMTt-la~ilG~iPLal~~g~Ga~~r~ 978 (1009)
T COG0841 900 PLDVYAQIGLITLIGLVAKNAILIVEFANELRAEGLSLREAILEAARLRLRPILMTS-LAAILGVLPLALSTGAGAESRQ 978 (1009)
T ss_pred CCcHHHHHHHHHHHHHHhcCcEEEEhHHHHHHHcCCCHHHHHHHHhhhhhhhHHHHH-HHHHHhhhhhhhcccccccccC
Confidence 9999999999999999999999998422 23456899999999999999999997 699999999999986411100
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q 000819 1221 -YFQMYLALVLLGFLHGLVFLPVVLSVFG 1248 (1268)
Q Consensus 1221 -~f~m~~~~v~~~~l~~Li~LPvlLs~~g 1248 (1268)
....++..+++|-+.+|+++|++..++.
T Consensus 979 ~lgi~vigGl~~sT~LtL~~vPv~Y~~~~ 1007 (1009)
T COG0841 979 PLGIAVVGGLLVATVLTLFVVPVFYVLVE 1007 (1009)
T ss_pred cceEEEechhHHHHHHHHhhhhhhheeee
Confidence 0111223466777889999999998874
No 31
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.79 E-value=8.7e-16 Score=191.72 Aligned_cols=434 Identities=12% Similarity=0.142 Sum_probs=273.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccce
Q 000819 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (1268)
Q Consensus 635 ~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~ 714 (1268)
..+++++++++|+.+.++. .|+..++...+.++.++|++.++|.++|+ ....--.+.+|++||+.
T Consensus 283 A~ii~~~lV~lfm~~~Y~~--------------~glia~iaL~~~v~~tl~~l~l~g~~Lnl-~siaGlIL~IGm~VD~~ 347 (758)
T PRK13023 283 AALLAALVVGLFMVLSYGI--------------LGVIALVALVVNIIILTAVLSLIGASISL-ASIAGLVLTIGLAVDAH 347 (758)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHHHHhccCc
Confidence 3456777777777765532 37788889999999999999999999997 55555668899999999
Q ss_pred ehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 715 CILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALI 793 (1268)
Q Consensus 715 ~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL 793 (1268)
+++.++++++ +++.+.++++.++.++++.+|+.+++|++++|+.+.+...+++|.|++...+|++++++..+++.|+++
T Consensus 348 Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~lTTlia~lpL~~~g~g~ik~FAitliiGi~~S~~~al~vt~~l~ 427 (758)
T PRK13023 348 ILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLI 427 (758)
T ss_pred EEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999976 567899999999999999999999999999999998888899999999999999999999999999999
Q ss_pred HHhhhcccccCcccccccccCCCCcCCCCCccc-ccchhHH-HHHHH---------h-hhccccCCccccccCCCchhhh
Q 000819 794 VFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQ-RKPGLLA-RYMKA---------L-CTRIEPGLEQKIVLPRDSYLQG 861 (1268)
Q Consensus 794 ~l~~rr~~~~r~d~~~c~~~~~~~~~~~~~~~~-~~~~~L~-r~~k~---------~-~~~I~~gldq~~~lP~dSyl~~ 861 (1268)
.+..++...++.. .+ . .+.... ..-.+++ |...+ + ..-...|++.
T Consensus 428 ~~~~~~~~~~~~~------~~--~---~~~~~~~~~~dF~~~r~~~~~iS~il~~~~~~~~~~~Gln~------------ 484 (758)
T PRK13023 428 AQWVRTAKPKEVP------KR--R---LKLVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNY------------ 484 (758)
T ss_pred HHHHhhcCccccc------hh--h---hhhcccCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCCC------------
Confidence 8776553222110 00 0 000000 0001221 11100 0 0000111110
Q ss_pred HHHHHhhhccCCCCEEEEEecCCCCchhHhhhhhhcccccCcchHHHHHHHhccCCCCccccCCCCCcHHHHHHhhcccc
Q 000819 862 YFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYIAKPAASWLDDFLVWISPEA 941 (1268)
Q Consensus 862 yf~~~~~~~~~g~pvy~Vv~~~d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~~~~~s~i~~~~~sWlddf~~~l~~~~ 941 (1268)
.=.|.+|.-+.+-.+..+.. . +.+.+.++.. +-
T Consensus 485 -----GIDFtGGt~i~v~~~~~~~~-~---------------~~vr~~l~~~------------------------~~-- 517 (758)
T PRK13023 485 -----GIDFRGGSMVELQARNGDAN-L---------------EDINERLAEL------------------------NI-- 517 (758)
T ss_pred -----CeEecCceEEEEEecCCCCC-H---------------HHHHHHHHhc------------------------CC--
Confidence 01133343222222111100 0 0011111100 00
Q ss_pred cccccccCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCcccccCCcCCCCCChhHHHhhHHHHHhcCCCccccCCCCCC
Q 000819 942 FGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKLPWFLNALPSASCAKGGHGA 1021 (1268)
Q Consensus 942 ~~cc~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L~~fl~~~p~~~c~~gg~~~ 1021 (1268)
.+ . +-+.+ |+
T Consensus 518 -------~~-----~-------------------------------------~vq~~------------------~~--- 527 (758)
T PRK13023 518 -------DS-----A-------------------------------------RVLPA------------------KS--- 527 (758)
T ss_pred -------CC-----c-------------------------------------eEEEe------------------cC---
Confidence 00 0 00000 00
Q ss_pred ccccccccCCCCceEEEEEEEEEecccCchhhHHHHHHHHHHHHHhhcccCCc-eeeeccceeehhHHHHHHHHHHHHHH
Q 000819 1022 YTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQM-EIFPYSVFYMYFEQYLDIWRTALINL 1100 (1268)
Q Consensus 1022 y~~~v~~~~~~~~~I~as~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~~~~-~v~~~~~~~v~~eq~~~i~~~~~~~l 1100 (1268)
.++..+ +++.. ... .++-.+..+. +.+.+....+. +.-..|+. --..+.+..+..+
T Consensus 528 ---------~~~~~i---~~~~~--~~~-~~~~~~~~~~---l~~~~~~~~~~~~~~~VGp~-----vg~el~~~ai~Av 584 (758)
T PRK13023 528 ---------PRSALV---IIGSQ--EVG-DDAEQTVAVK---LRGEFEQDYSFQRVDVVGPT-----VSEQLSRAGVLAV 584 (758)
T ss_pred ---------CCceEE---EEeCC--CCc-chHHHHHHHH---HHhhcCCCcceeEEEEECcc-----hHHHHHHHHHHHH
Confidence 000000 11110 000 0000011111 11122111111 11112221 1244666778888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccC----
Q 000819 1101 AIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS---- 1176 (1268)
Q Consensus 1101 ~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~---- 1176 (1268)
++|+++|++-+++-| .|+.++..++++.-=++.++|++.++|+++|...+..++..+|.|++++|.+.-|.+|..
T Consensus 585 ~ia~i~IliYI~~RF-~~~fav~AviALiHDvlivlg~fsl~~~e~~l~~IAAlLTiiGYSiNDTIVVfDRIREn~~~~~ 663 (758)
T PRK13023 585 ILSLIGIFIYVWFRF-RWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYK 663 (758)
T ss_pred HHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHhCceecHHHHHHHHHHHhhcccCeEEEeHHHHHHHhhcC
Confidence 888888887777766 477777777787777888999999999999999999999999999999999998887753
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 000819 1177 -GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249 (1268)
Q Consensus 1177 -~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp 1249 (1268)
.+..+.+..++.++-.-.+.+. +||++.+++|.+-....++.|-+.|+ +.+++|...++++-+.++.+++.
T Consensus 664 ~~~~~eivn~SInqTl~RTI~TS-~TTll~~l~L~ifGg~~i~~Fal~ll-iGiv~GtySSIfIAspl~~~~~~ 735 (758)
T PRK13023 664 SAPLPAIIDASINQTLSRTLLTS-FVTFLAHVPLYAFGGSEIRMFALALS-VGIIVASYSSIFIAAPLLVQFGL 735 (758)
T ss_pred CCCHHHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHhcCccHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHhc
Confidence 2456788888888655544444 48899988888888788888865554 46788888999988887777753
No 32
>TIGR03480 HpnN hopanoid biosynthesis associated RND transporter like protein HpnN. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins appear to be related to the RND family of export proteins, particularly the hydrophobe/amphiphile efflux-3 (HAE3) family represented by TIGR00921.
Probab=99.71 E-value=2.4e-16 Score=206.02 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHHhhcc--cCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000819 1054 YVNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 1131 (1268)
Q Consensus 1054 ~~~~~~~~~~i~~~~~~--~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~ 1131 (1268)
..++++++|+..++++. +.|+++...|......|....+.++......+++++|++++++++||++.++++++++++.
T Consensus 227 ~~~~~~~i~~~~~~~~~~~~~g~~v~~~G~~~~~~~~~~~~~~~~~~~~~~a~~lv~llL~l~frs~~~~l~~l~~i~~s 306 (862)
T TIGR03480 227 AEKAINAIRAAAKDLRLDEDHGVTVRLTGEVALSDEELATVSEGATVAGLLSFVLVLVLLWLALRSPRLVFAVLVTLIVG 306 (862)
T ss_pred hHHHHHHHHHHHHhcccCCCCCCEEEEeCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 34677777777776543 3578888888877777888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1132 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIV 1208 (1268)
Q Consensus 1132 ~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~v 1208 (1268)
+++.+|+|+++|.++|.+|++..++.+|++|||+||+.++|+++ +.++.+++.+|++++|+|++.++ +||++||+.
T Consensus 307 ~~~~~~~~~l~~~~ln~~s~~~~~lliGi~vD~~I~~~~r~~e~~~~g~~~~~A~~~a~~~~~~~i~~s~-lTt~~gf~~ 385 (862)
T TIGR03480 307 LILTAAFATLAVGHLNLISVAFAVLFIGLGVDFAIQFSLRYREERFRGGNHREALSVAARRMGAALLLAA-LATAAGFFA 385 (862)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 99999999999999999999999999999999999999999875 35788999999999999999997 699999999
Q ss_pred hhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1209 LCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1209 L~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
|.+++.+.++.+ +.+....++++++.+++++|+++++++|+
T Consensus 386 l~~~~~~~~~~l-g~~~~~gv~~s~l~~l~llP~l~~~~~~~ 426 (862)
T TIGR03480 386 FLPTDYKGVSEL-GIIAGTGMFIALFVTLTVLPALLRLLRPP 426 (862)
T ss_pred HHHcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 999998888877 34445568889999999999999999654
No 33
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=99.71 E-value=3.5e-16 Score=202.51 Aligned_cols=205 Identities=17% Similarity=0.221 Sum_probs=161.9
Q ss_pred EEEEEecccCchhhHHHHHHHHHHHHHhhccc--CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1040 SFRTYHTPLNRQIDYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCS 1117 (1268)
Q Consensus 1040 ~f~~~~~~l~~~~d~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s 1117 (1268)
-+.++..+-.+. ++..+.+++..+++++. .|+++.. .|.-.+-....+++....++.|+++|++|+++|+++
T Consensus 279 ~l~V~~~~gaN~---v~v~~~V~~~l~~l~~~lP~gv~~~~---~~D~t~~V~~si~~v~~tL~~a~~lVv~Vi~lFL~~ 352 (1009)
T COG0841 279 GLAVKKAPGANA---LDTAKAVKAKLAELQANLPQGVDIAI---PYDTTEFIKASIEEVIKTLFEAIVLVVLVMYLFLGN 352 (1009)
T ss_pred EEEEEECCCCCH---HHHHHHHHHHHHHHHHhCCCCcEEEE---ecCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 344444443333 34444444444444432 2555432 222233445567889999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee---hhhhccCCCHHHHHHHHHHHHHHHH
Q 000819 1118 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVSSGDKNQRMKEALGTMGASV 1194 (1268)
Q Consensus 1118 ~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~---~~f~~~~~~~~~r~~~al~~~g~~V 1194 (1268)
+++++++.++++++++++|++|+++|++||.+|+..+++|+|+.||++|.++ +|+++ +.++.+++.++.++++.||
T Consensus 353 ~ratlI~~iaiPlsLlgtf~~m~~~GfslN~lTL~aLiLAiGllVDDAIVVvENI~R~~~-G~~p~~Aa~~a~~ei~~~v 431 (1009)
T COG0841 353 LRATLIPALAVPVSLLGTFAVMYAFGFSLNTLTLFALVLAIGLLVDDAIVVVENIERHMR-GLPPREAAEKAMGEIGGAV 431 (1009)
T ss_pred cceeEEeeeechHHHHHHHHHHHHhCccchHhHHHHHHHhhheeEeccEEEEeeEEeecC-CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 55555 7789999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000819 1195 FSGITLTKLVGVIVLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1195 ~~g~~lTt~~G~~vL~fs~~~i---~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~ 1253 (1268)
+.+ |+|++++|+|++|.++-. |+.| +..+.+.+++|++.+++|.|+|.+++-++...
T Consensus 432 ia~-TlvliaVF~Pi~f~~G~~G~~f~~f-~~tia~a~~~S~~vAltltP~L~a~lLk~~~~ 491 (1009)
T COG0841 432 IAI-TLVLIAVFLPMAFMGGSTGELFRQF-AITIAVAMLLSLLVALTLTPALCARLLKPVPP 491 (1009)
T ss_pred HHH-HHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 977 579999999999999654 4444 44555678899999999999999999776544
No 34
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.69 E-value=3.3e-13 Score=170.87 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=116.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHH
Q 000819 669 GLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITL 747 (1268)
Q Consensus 669 ~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~ 747 (1268)
|+...+.+++.++.++|++.++|.++|+ +..+--.+++|++||+.++++.+.+++ +.+.+..+++..+.+++..+|+.
T Consensus 934 GliA~IALll~VlltLg~LsLlGitLTL-pgIAGIILlIGmAVDdnIVIfERIREELr~Gksl~eAI~~G~~~afs~ILd 1012 (1403)
T PRK12911 934 GVIASGAVLLNLLLIWAALQYLDAPLTL-SGLAGIVLAMGMAVDANVLVFERIREEYLLSRSLSESVEAGYKKAFSAIFD 1012 (1403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHhhcCCEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 6667777788889999999999999997 455555678899999999999999886 56889999999999999999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1268)
Q Consensus 748 tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~~ 801 (1268)
|++||+++++.+.+....++|.|++..++|++++++..+++.|+++.+..+|..
T Consensus 1013 TnLTTLIA~lPLf~fGtG~vkgFAvTLiIGII~SmftALfVtP~Ll~l~l~~~~ 1066 (1403)
T PRK12911 1013 SNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTALFMTKFFFMIWMNKTQ 1066 (1403)
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999777777899999999999999999999999999987765543
No 35
>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog. In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane
Probab=99.68 E-value=5e-14 Score=183.09 Aligned_cols=375 Identities=17% Similarity=0.170 Sum_probs=231.3
Q ss_pred HHHHH-HHHhchhhhccchHHH--HHHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEE
Q 000819 369 YMSNF-YRKYGKWVARNPTLVL--SLSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELIL 445 (1268)
Q Consensus 369 ~l~~~-f~~~g~~var~P~~vl--~~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii 445 (1268)
.+.++ ..+++.|+.+.+..++ ++.++..++..+|..+++..-||.++ +|+||+..+-.+..|+.|.+.+..-.+++
T Consensus 419 ~~~~~~~~~y~~~l~~~~~k~~vll~~~~yl~~siyG~~~i~~gld~~~l-~p~dSyl~~~~~~~e~yf~~~g~~v~V~v 497 (798)
T PF02460_consen 419 SLSRFFRDYYAPFLTSPWVKIFVLLLFLIYLGVSIYGCTQIKEGLDPEKL-FPDDSYLQKFFRLQEKYFFSYGPPVYVVV 497 (798)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhcccCCCCChhhc-cCCCChhHHHHHHHHHHhhccCceEEEEe
Confidence 33444 4468889888875553 44444555677899999999999866 69999998888877888866554334444
Q ss_pred EeccCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCCCCCCCccc
Q 000819 446 ATIPDTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNFDDFGGVEH 525 (1268)
Q Consensus 446 ~~~~~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~~~~~~~~~ 525 (1268)
.. .++.-+++..+++.++.+++++.+... +.. ....-+.+..+|.+.......+++..+.
T Consensus 498 ~~--------~~d~~~~~~~~~l~~lv~~fe~~~~~~-~~~-----------~t~~WL~~y~~~l~~~~~~~~~~~~~~~ 557 (798)
T PF02460_consen 498 NN--------PPDYSDPENQDRLNSLVQEFENSPYSI-GNN-----------STSFWLRDYLNFLNSINSSFQDDNDKEF 557 (798)
T ss_pred cC--------CCCccchHHHHHHHHHHHHHhcccccc-ccc-----------cchhhHHHHHHHHhhcccccccccccee
Confidence 32 245888999999999999888764211 110 0001112222333221111111000000
Q ss_pred ccccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhcccc
Q 000819 526 VKYCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPM 605 (1268)
Q Consensus 526 l~~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~ 605 (1268)
.....+.... .+. +.+...+..+. ..+++-..-.+.+++...++..+ .+...++-+++.+.++++
T Consensus 558 ~~~~l~~FL~----~~~-~~~~~~di~~~-~~~~~~~~I~a~rf~~~~~~~~~-----~~~~~~~~~~~R~i~~~~---- 622 (798)
T PF02460_consen 558 FYNLLPEFLN----SPE-YRHYSNDIKFD-DSDNDTTQISAFRFTTQLKNLSD-----WSDRIEAMKDWRQIADKY---- 622 (798)
T ss_pred eeccchhhhc----ccc-ccccccccccc-cccCCccceeeEEEEEEccCCCC-----HHHHHHHHHHHHHhhhcc----
Confidence 0000000000 000 01111111111 00112223345555555554322 111122223333333322
Q ss_pred ccCCCeEEE-EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHH
Q 000819 606 VQSKNLTLA-FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSV 684 (1268)
Q Consensus 606 ~~~~~l~v~-f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~ 684 (1268)
+.+++. |+..-...|.+......-+..++++.+.|++...+.+.+. ..++..++.++.-.+..+
T Consensus 623 ---~~~~~~~~~~~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~~~------------~~~~~~~~~i~~i~~~v~ 687 (798)
T PF02460_consen 623 ---SDFNVFVFSPFFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIPNP------------RSSLIVTLSILSIDVGVI 687 (798)
T ss_pred ---eecceEeeccchhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhccc------------hhHHHHHHHHHHHHHHHH
Confidence 223333 3333333444443333334457778888887766665553 235555666666666788
Q ss_pred HHHHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCc
Q 000819 685 GFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM 764 (1268)
Q Consensus 685 Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~ 764 (1268)
|+|.++|++++. ++.+.-.+.+|++||++.|+.++|.+.... +..+|+.+|++++|.|++-.+++|.+|.+.+++++.
T Consensus 688 G~m~~~g~~l~~-vs~v~l~~~iG~sVd~~~Hi~~~f~~~~~~-~~~~r~~~al~~~g~pv~~~~~st~l~~~~l~f~~~ 765 (798)
T PF02460_consen 688 GFMSLWGVDLDP-VSMVNLIMSIGFSVDFSAHIAYAFVHSQGS-TRDERVAEALSSMGWPVLQGALSTFLGVLPLAFSPS 765 (798)
T ss_pred HhhhccccCcch-HHHHHHHHHhchhhHHHHHHHHHheecccc-hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999998 577777788999999999999999876543 899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 765 PACRVFSMFAALAVLLDFLLQITAFVALIVFD 796 (1268)
Q Consensus 765 p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~ 796 (1268)
..+|.|.-...+.+++.++-.+.++|++|++.
T Consensus 766 ~~~~~ff~~~~l~~~~~~~hglv~lPv~ls~~ 797 (798)
T PF02460_consen 766 YIFRVFFKTVFLVIIFGLLHGLVFLPVLLSLF 797 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999863
No 36
>PRK09579 multidrug efflux protein; Reviewed
Probab=99.66 E-value=4.7e-15 Score=195.73 Aligned_cols=194 Identities=12% Similarity=0.167 Sum_probs=153.3
Q ss_pred hhHHHHHHHHHHHHHhhccc--CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000819 1052 IDYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 1129 (1268)
Q Consensus 1052 ~d~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~ 1129 (1268)
.+..+..+++++..+++++. .|+++... +.-.+.......+...+++.+++++++++++++++++.++++.++++
T Consensus 290 ~n~~~v~~~v~~~l~~~~~~lP~g~~~~~~---~d~~~~i~~~~~~~~~~l~~~~ilv~lvl~lfl~~~r~~l~~~~~IP 366 (1017)
T PRK09579 290 ANPLDVIKEVRAIMPELESQLPPNLKVSIA---YDATLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIP 366 (1017)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCcEEEEE---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34555666666665555432 24444322 11112223445677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhh---hccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1130 MIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF---SVSSGDKNQRMKEALGTMGASVFSGITLTKLVGV 1206 (1268)
Q Consensus 1130 ~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f---~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~ 1206 (1268)
+++++.+++|+++|++||.+|++.+++++|+.||++||+..++ ++.++++.+++.++.+++++|++.+. +||++||
T Consensus 367 ~s~~~~~~~l~~~G~~ln~~sl~gli~~iGi~VddaIvv~e~i~~~~~~G~~~~~A~~~~~~~~~~pil~st-lTti~~f 445 (1017)
T PRK09579 367 LSMIGVLFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPFDAALEGAREIAMPVVSMT-ITLAAVY 445 (1017)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHhhheeecCcEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999999999999999999999999999999433 44456899999999999999999885 7999999
Q ss_pred Hhhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1207 IVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1207 ~vL~fs~~---~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
++++|.++ ++++.+ ...++..+++|++.+++++|++++++-++
T Consensus 446 ~Pl~f~~g~~g~~~~~l-~~~v~~~l~~S~l~al~l~P~l~~~~~~~ 491 (1017)
T PRK09579 446 APIGFLTGLTGALFKEF-ALTLAGAVIISGIVALTLSPMMCALLLRH 491 (1017)
T ss_pred HHHhhcCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999874 344444 34445678899999999999999988543
No 37
>PRK10614 multidrug efflux system subunit MdtC; Provisional
Probab=99.65 E-value=5.3e-15 Score=195.77 Aligned_cols=193 Identities=13% Similarity=0.149 Sum_probs=153.5
Q ss_pred hHHHHHHHHHHHHHhhcc--cCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1130 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~--~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~ 1130 (1268)
+..+..+.+++..+++++ +.|+++... +...+.....+.+...+++++++++++++++++++++.++++.+++++
T Consensus 292 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~---~d~~~~i~~~~~~~~~~~~~~~~lv~~vl~l~l~~~r~~li~~~~ip~ 368 (1025)
T PRK10614 292 NIIQTVDRIRAKLPELRETIPAAIDLQIA---QDRSPTIRASLEEVEQTLAISVALVILVVFLFLRSGRATLIPAVAVPV 368 (1025)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEe---ecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455555544444432 124554322 222233344566788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee---hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1131 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVI 1207 (1268)
Q Consensus 1131 ~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~---~~f~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~ 1207 (1268)
++++.+++|+++|++||.+|++.+++++|+.||++||+. +++++++.++.+++.++.++++.|++.+. +|+++||+
T Consensus 369 s~~~~~~~l~~~g~~ln~~sl~gl~~~iGi~Vd~aIvv~e~i~~~~~~g~~~~~A~~~~~~~~~~~i~~st-ltti~~f~ 447 (1025)
T PRK10614 369 SLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMS-LSLVAVFL 447 (1025)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhheeecCcEEEEeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999999999999999999999999 55555556899999999999999999975 79999999
Q ss_pred hhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1208 VLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1208 vL~fs~~---~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
+++|.+. .+++.+ ....+..+++|++.+++++|++++++.++
T Consensus 448 Pl~~~~g~~g~~~~~~-~~~~~~~l~~S~~~al~~~P~l~~~~~~~ 492 (1025)
T PRK10614 448 PLLLMGGLPGRLFREF-AVTLSVAIGISLLVSLTLTPMMCAWLLKS 492 (1025)
T ss_pred HHHHhCCchhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999886 455555 34445678899999999999999998653
No 38
>PF00873 ACR_tran: AcrB/AcrD/AcrF family; InterPro: IPR001036 The Escherichia coli acrA and acrB genes encode a multi-drug efflux system that is believed to protect the bacterium against hydrophobic inhibitors []. The E. coli AcrB protein is a transporter that is energized by proton-motive force and that shows the widest substrate specificity among all known multidrug pumps, ranging from most of the currently used antibiotics, disinfectants, dyes, and detergents to simple solvents. The structure of ligand-free AcrB shows that it is a homotrimer of 110kDa per subunit. Each subunit contains 12 transmembrane helices and two large periplasmic domains (each exceeding 300 residues) between helices 1 and 2, and helices 7 and 8. X-ray analysis of the overexpressed AcrB protein demonstrated that the three periplasmic domains form, in the centre, a funnel-like structure and a connected narrow (or closed) pore. The pore is opened to the periplasm through three vestibules located at subunit interfaces. These vestibules were proposed to allow direct access of drugs from the periplasm as well as the outer leaflet of the cytoplasmic membrane. The three transmembrane domains of AcrB protomers form a large, 30A-wide central cavity that spans the cytoplasmic membrane and extends to the cytoplasm X-ray crystallographic structures of the trimeric AcrB pump from E. coli with four structurally diverse ligands demonstrated that three molecules of ligand bind simultaneously to the extremely large central cavity of 5000 cubic angstroms, primarily by hydrophobic, aromatic stacking and van der Waals interactions. Each ligand uses a slightly different subset of AcrB residues for binding. The bound ligand molecules often interact with each other, stabilising the binding. ; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2V50_B 1T9U_A 2HRT_B 3NOC_A 3NOG_A 4DX7_A 1OYD_A 3AOB_A 1T9V_A 4DX6_B ....
Probab=99.64 E-value=2.7e-15 Score=199.90 Aligned_cols=199 Identities=18% Similarity=0.229 Sum_probs=158.6
Q ss_pred hhhHHHHHHHHHHHHHhhccc--CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 000819 1051 QIDYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVL 1128 (1268)
Q Consensus 1051 ~~d~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i 1128 (1268)
..+.++..+++++..+++++. .|+++.+ .+.-.+....-++....+++++++++++++++++++||.++++.++|
T Consensus 289 ~~n~v~~~~~v~~~l~~~~~~lp~~~~~~~---~~d~s~~i~~~i~~l~~~~~~g~~lv~~vl~lfl~~~r~~liv~~~I 365 (1021)
T PF00873_consen 289 GANIVEVSDAVKKRLEELQKTLPEGLEITI---VYDQSEYIEESINNLISNLLIGIILVVLVLLLFLRNWRSALIVALSI 365 (1021)
T ss_dssp TSBHHHHHHHHHHHHHHHGGGSSTTEEEEE---EEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCccceEEE---EEechHHHHHHHHHHHHHHHHHhHhhhhhhhhhhcchHHHHHHHHHH
Confidence 345666667777777776643 2444432 23333444556678889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee---hhhhcc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1129 TMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT---HAFSVS-SGDKNQRMKEALGTMGASVFSGITLTKLV 1204 (1268)
Q Consensus 1129 ~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~---~~f~~~-~~~~~~r~~~al~~~g~~V~~g~~lTt~~ 1204 (1268)
+++++..+++|+++|++||.+|+..+++++|+.||++|.+. ++++++ ++++.+++.++.++++.|++.+. +||++
T Consensus 366 Pisi~~t~~~m~~~g~slN~~SL~gl~laiG~lVDdaIVV~Eni~r~~~~~g~~~~~Aa~~~~~ev~~~i~~st-lTti~ 444 (1021)
T PF00873_consen 366 PISILGTFIFMYLFGISLNIMSLAGLILAIGMLVDDAIVVVENIYRHLEEEGKSPLEAAIEGTKEVAPPILAST-LTTIA 444 (1021)
T ss_dssp HHHHHHHHHHHHHTTTTBEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCchHHHHHhHHHhcccccccceehHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999998 555566 77999999999999999999875 89999
Q ss_pred HHHhhhcccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000819 1205 GVIVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1205 G~~vL~fs~~~i~~~f--~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~ 1253 (1268)
.|+|++|.++..-+.| +...+.+.+++|++.+++++|++.+++-++...
T Consensus 445 vF~Pl~f~~G~~g~~~~~l~~~v~~al~~Sllval~~~P~l~~~~l~~~~~ 495 (1021)
T PF00873_consen 445 VFLPLLFMPGIAGQFFRPLALTVIIALIASLLVALTLVPALAALFLKPKKK 495 (1021)
T ss_dssp HTCGGGGSBHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHCS----T
T ss_pred HhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccc
Confidence 9999999996544422 123334567899999999999999988554433
No 39
>TIGR00915 2A0602 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.62 E-value=2.1e-14 Score=190.27 Aligned_cols=158 Identities=13% Similarity=0.253 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
.....+...++++++++++++++++++|++.++++.+++++++++.+++|+++|++||.+|++.+++++|+.||++||+.
T Consensus 334 ~~~~~~~~~~~~~a~~lv~lvl~l~l~s~r~~li~~~~iP~s~~~~~~~~~~~g~~ln~~sl~gli~~iGi~VD~aIvv~ 413 (1044)
T TIGR00915 334 SASIEEVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVV 413 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHhhheecceEEEe
Confidence 44567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc---c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSV---S-SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1242 (1268)
Q Consensus 1170 ~~f~~---~-~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~---i~~~f~f~m~~~~v~~~~l~~Li~LPv 1242 (1268)
.++.+ + +.++.+++.++.++++.|++.+. +|+++||++|+|..+. +++.+ ....+..+++|++.+++++|+
T Consensus 414 e~i~~~~~~~g~~~~~A~~~~~~~~~~~i~~tt-ltti~~flPl~~~~G~~g~~~~~~-~~~i~~~l~~S~l~al~~~P~ 491 (1044)
T TIGR00915 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1044)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 54432 2 35889999999999999998875 7999999999998753 44444 334445688999999999999
Q ss_pred HHhhhCC
Q 000819 1243 VLSVFGP 1249 (1268)
Q Consensus 1243 lLs~~gp 1249 (1268)
++.++.+
T Consensus 492 l~~~~~~ 498 (1044)
T TIGR00915 492 LCATMLK 498 (1044)
T ss_pred HHHHhcC
Confidence 9988754
No 40
>PRK09577 multidrug efflux protein; Reviewed
Probab=99.62 E-value=2.1e-14 Score=190.13 Aligned_cols=194 Identities=14% Similarity=0.153 Sum_probs=150.8
Q ss_pred hHHHHHHHHHHHHHhhcc--cCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1130 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~--~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~ 1130 (1268)
+..+..+.+++..+++.+ +.|+++...+ .-.+......++...++++++++++++++++++|++.++++++++++
T Consensus 297 n~~~v~~~v~~~l~~~~~~lP~g~~~~~~~---d~~~~i~~~i~~~~~~l~~~~ilv~lvl~l~l~s~r~~liv~~~iP~ 373 (1032)
T PRK09577 297 NAVATEKRVRATMDELSRYFPPGVKYQIPY---ETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQNFRATLIPTLVVPV 373 (1032)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEEEEe---cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 334444555555444432 2355543322 11222233556778889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1131 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGV 1206 (1268)
Q Consensus 1131 ~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~----~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~ 1206 (1268)
++++.+++|+++|++||.+|++.+++++|+.||++||+..++.+ .+.++.+++.+|.+++++|++.+. +|++++|
T Consensus 374 s~~~~~~~m~~~g~~ln~~sl~gl~~~iGi~VD~aIvvie~i~~~~~~~G~~~~~A~~~a~~~~~~~i~~~t-lt~~~~f 452 (1032)
T PRK09577 374 ALLGTFGVMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENVERLMVEEGLSPYDATVKAMKQISGAIVGIT-VVLTSVF 452 (1032)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHheeeEecCcEEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999999999999999999999999955533 245889999999999999998764 7999999
Q ss_pred HhhhcccchhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1207 IVLCFSRTEVFVVY--YFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1207 ~vL~fs~~~i~~~f--~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
++++|.++...+.| +....+..+++|++.+++++|+++..+.++
T Consensus 453 lPl~~~~g~~g~~~~~~~~~v~~~l~~S~~~al~~~P~l~~~~~~~ 498 (1032)
T PRK09577 453 VPMAFFGGAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKP 498 (1032)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99999985444322 133445568899999999999999998653
No 41
>PRK15127 multidrug efflux system protein AcrB; Provisional
Probab=99.62 E-value=1.8e-14 Score=190.77 Aligned_cols=159 Identities=14% Similarity=0.261 Sum_probs=138.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
.....+...+++++++++++++++++++++.++++++++++++++.+++|+++|++||.+|++.+++++|+.||++||+.
T Consensus 334 ~~~~~~~~~~l~~~~~lv~~vl~l~l~~~r~~li~~~~iP~sl~~~~~~~~~~g~~ln~~sl~glil~iGi~VD~aIvvi 413 (1049)
T PRK15127 334 KISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVV 413 (1049)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHhhccceEEEe
Confidence 44567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTE---VFVVYYFQMYLALVLLGFLHGLVFLPV 1242 (1268)
Q Consensus 1170 ~~f~~----~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~---i~~~f~f~m~~~~v~~~~l~~Li~LPv 1242 (1268)
.++.+ .+.++.+++.++.+++++|++.+. +|+++||++|+|.++. +++.+ ...++..+++|++.+++++|+
T Consensus 414 e~i~~~~~~~G~~~~~A~~~~~~~v~~~i~~~t-ltt~~~f~Pl~~~~G~~g~~~~~~-~~~~~~~l~~S~l~al~~vP~ 491 (1049)
T PRK15127 414 ENVERVMAEEGLPPKEATRKSMGQIQGALVGIA-MVLSAVFVPMAFFGGSTGAIYRQF-SITIVSAMALSVLVALILTPA 491 (1049)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHhHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 55533 245889999999999999999875 7999999999997654 34443 334456788999999999999
Q ss_pred HHhhhCCC
Q 000819 1243 VLSVFGPP 1250 (1268)
Q Consensus 1243 lLs~~gp~ 1250 (1268)
++.++.++
T Consensus 492 l~~~~l~~ 499 (1049)
T PRK15127 492 LCATMLKP 499 (1049)
T ss_pred HHHHhCCc
Confidence 99987643
No 42
>PRK10555 aminoglycoside/multidrug efflux system; Provisional
Probab=99.62 E-value=2e-14 Score=190.32 Aligned_cols=192 Identities=11% Similarity=0.203 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhhcc--cCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000819 1054 YVNSMRAAREFSSRVSD--SLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 1131 (1268)
Q Consensus 1054 ~~~~~~~~~~i~~~~~~--~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~ 1131 (1268)
-++..+++++..+++.+ +.|+++... +.-.+......++...++++++++++++++++++|++.+++++++++++
T Consensus 299 ~~~v~~~v~~~l~~~~~~lp~g~~~~~~---~d~~~~i~~~~~~~~~~~~~~~~lv~lvl~l~l~s~r~~li~~~~iP~s 375 (1037)
T PRK10555 299 EMATAKLVLNRLDELAQYFPHGLEYKVA---YETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVV 375 (1037)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEe---ecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHhhhHHH
Confidence 34445555555555432 124544332 1112333456678888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1132 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSV----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVI 1207 (1268)
Q Consensus 1132 ~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~----~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~ 1207 (1268)
+++.+|+|+++|+++|.+|++.+++++|+.||++||+..++.+ .+.++.+++.+|.++++.|++.+. +|++++|+
T Consensus 376 i~~t~~~~~~~G~~ln~~sl~glii~iGi~Vd~aIvvve~i~~~~~~~G~~~~~Ai~~a~~~~~~~i~~st-ltti~~fl 454 (1037)
T PRK10555 376 LMGTFSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIA-MVLSAVFV 454 (1037)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhhheecCeEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 9999999999999999999999999999999999999955543 245899999999999999998875 79999999
Q ss_pred hhhcccchh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1208 VLCFSRTEV---FVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1208 vL~fs~~~i---~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
+++|.++.. ++.+ ....+..+++|++.+++++|+++.++.++
T Consensus 455 Pl~~~~G~~g~~~~~l-~~~v~~~l~~S~~~al~l~P~l~~~~~~~ 499 (1037)
T PRK10555 455 PMAFFGGTTGAIYRQF-SITIVSAMVLSVLVAMILTPALCATLLKP 499 (1037)
T ss_pred HHHhccCchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999997543 3333 23344568899999999999999987654
No 43
>PRK10503 multidrug efflux system subunit MdtB; Provisional
Probab=99.61 E-value=2.3e-14 Score=189.60 Aligned_cols=161 Identities=16% Similarity=0.238 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeeccee
Q 000819 1087 EQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCV 1166 (1268)
Q Consensus 1087 eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsi 1166 (1268)
+.....+++...+++++++++++++++++++++.++++.+++++++++.+++|+++|++||.+|++.+++++|+.||++|
T Consensus 334 ~~i~~~i~~~~~~l~~~~~lv~~vl~lfl~~~r~~~i~~~~ip~s~~~~~~~l~~~g~~ln~~sl~gl~~~iG~~Vd~aI 413 (1040)
T PRK10503 334 TNIRASVDDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAI 413 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHheeeeecCeE
Confidence 44445567788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhhh---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1167 HITHAFS---VSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFL 1240 (1268)
Q Consensus 1167 Hi~~~f~---~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~---~i~~~f~f~m~~~~v~~~~l~~Li~L 1240 (1268)
|+..++. +++.++.+++.++.++++.|++.+ ++|++++|++++|++. .+++.+ .......+++|++.+++++
T Consensus 414 vv~e~i~~~~~~g~~~~~aa~~~~~~~~~~vl~~-tltti~~f~Pl~~~~g~~G~~~~~~-~~~v~~~l~~S~~~al~~~ 491 (1040)
T PRK10503 414 VVIENISRYIEKGEKPLAAALKGAGEIGFTIISL-TFSLIAVLIPLLFMGDIVGRLFREF-AVTLAVAILISAVVSLTLT 491 (1040)
T ss_pred EEehhHHHHHHcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 9995443 334578899999999999999977 4799999999999885 556554 3444567889999999999
Q ss_pred HHHHhhhCC
Q 000819 1241 PVVLSVFGP 1249 (1268)
Q Consensus 1241 PvlLs~~gp 1249 (1268)
|++++.+.+
T Consensus 492 P~l~~~~l~ 500 (1040)
T PRK10503 492 PMMCARMLS 500 (1040)
T ss_pred HHHHHHhCc
Confidence 999998754
No 44
>COG4258 Predicted exporter [General function prediction only]
Probab=99.60 E-value=3.6e-12 Score=148.51 Aligned_cols=161 Identities=20% Similarity=0.208 Sum_probs=117.3
Q ss_pred EccchhHHHHHHhhhchhhHHHHH-HHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHH-hhcc
Q 000819 615 FSSESSIEEELKRESTADAITIVI-SYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS-AIGV 692 (1268)
Q Consensus 615 f~~~~sl~del~~~s~~d~~~~~i-s~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~-~~Gi 692 (1268)
-+|-.-..++....++.|+-++.+ +.+.+++.+.+++|+++ .-++|++++..+.++++.-.. .||.
T Consensus 240 ~tGp~fyA~~ar~~~~~d~~~lg~as~~giilLll~vfRS~R------------vllLgvls~gig~laglvAt~laFg~ 307 (788)
T COG4258 240 STGPVFYADYARQQAKQDISTLGVASLLGIILLLLAVFRSLR------------VLLLGVLSIGIGALAGLVATLLAFGE 307 (788)
T ss_pred hcCCeeeeHHHHHHHhhhhHHHhHHHHHHHHHHHHHHHhchh------------HHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 333334457777778888888765 55566666667777764 134555555555555543333 3443
Q ss_pred ccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHH
Q 000819 693 KSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSM 772 (1268)
Q Consensus 693 ~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i 772 (1268)
+.. ++.++-+-+||+.+||.|++....+.--...++- +..++.-|.+++.-+|+.++|+.+.++++|.+|++++
T Consensus 308 -lH~-lTl~fg~slIGeAvDYsI~yfv~h~~pG~~~dp~----rsaaev~paL~lallTtvlayatmlfs~fpgLrQLa~ 381 (788)
T COG4258 308 -LHL-LTLVFGMSLIGEAVDYSIYYFVEHMVPGNDVDPW----RSAAEVRPALLLALLTTVLAYATMLFSPFPGLRQLAI 381 (788)
T ss_pred -HhH-HHHHhhhhheeecccceeeehhhccCCCCCCChh----HHHHHhhHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Confidence 333 4677788889999999998887655422223433 3377888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000819 773 FAALAVLLDFLLQITAFVALI 793 (1268)
Q Consensus 773 ~aa~~v~~~~l~~lt~fpalL 793 (1268)
|+.+|+..+++....++|.+.
T Consensus 382 faivGL~aAaltvrfllP~L~ 402 (788)
T COG4258 382 FAIVGLLAAALTVRFLLPWLC 402 (788)
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 999999999999999999875
No 45
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.59 E-value=1.3e-12 Score=159.71 Aligned_cols=576 Identities=15% Similarity=0.197 Sum_probs=318.3
Q ss_pred CCCeEEEEccchh--HHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLAFSSESS--IEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1268)
Q Consensus 608 ~~~l~v~f~~~~s--l~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~G 685 (1268)
++++++.-.=.+| ++..+... ...+.=+.+++.+.+.+.|+++| + ++..++.+-+|++.++-
T Consensus 314 P~gVki~~~ydRs~lid~AI~tv----~k~LiEg~vlV~iVl~lFLgn~R--------s----Ali~~~~lPLS~li~f~ 377 (1027)
T COG3696 314 PEGVKIVTTYDRSELIDKAIDTV----SKTLIEGSVLVIIVLALFLGNFR--------S----ALIVIISLPLSLLIAFI 377 (1027)
T ss_pred CCCcEEEEEeeHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHhccHH--------H----HHHHHHHHHHHHHHHHH
Confidence 5677764332333 23333322 22344445555555556677753 2 67778888899999999
Q ss_pred HHHhhccccchhhhhHHH--HHhhhccccceehHHH-HHHHhc----CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q 000819 686 FFSAIGVKSTLIIMEVIP--FLVLAVGVDNMCILVH-AVKRQQ----LELPLETRISNALVEVGPSITLASLSEVLAFAV 758 (1268)
Q Consensus 686 l~~~~Gi~~~~i~~~v~p--flvl~iGvd~~~~l~~-~~~~~~----~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~ 758 (1268)
+|..+|+..|+. -+- .+.+|+=||.++.++. .|++.. .+..+-+.+.++.+++++|++++.+.-++.|+-
T Consensus 378 ~M~~~gi~~NlM---SLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~lII~vvf~P 454 (1027)
T COG3696 378 VMNFFGISANLM---SLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGLLIITVVFLP 454 (1027)
T ss_pred HHHHcCCcchhh---cccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhhhhheeehhh
Confidence 999999999863 333 2334444799887774 455532 245566778999999999999999999999984
Q ss_pred -hcccCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccCcccccccccCCCCcCCCCCcccccchhHHH
Q 000819 759 -GSFIPMP--ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR-AEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLAR 834 (1268)
Q Consensus 759 -~~~s~~p--~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr-~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~L~r 834 (1268)
++++.+. .++=+++.-.++++.+.++++|+.|++.++..|- .+....-+.-|.+ ..+. .+|.+
T Consensus 455 IFtL~GvEGklF~Pma~t~~~al~~a~llsiT~iPal~~~~i~~~~~e~en~l~r~~~------------r~Y~-plL~~ 521 (1027)
T COG3696 455 IFTLTGVEGKLFAPLAFTKTYALLAALLLSITFIPALMAYLIRGILPESENPLMRFLI------------RVYA-PLLEF 521 (1027)
T ss_pred hheeccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccHHHHHHH------------HHHH-HHHHH
Confidence 4555443 4666777888888999999999999999987663 1100000000000 0000 01111
Q ss_pred HHH-------------------------HhhhccccCC--ccccccCCCch--hhhHHHHHhhhccCCCCEE--------
Q 000819 835 YMK-------------------------ALCTRIEPGL--EQKIVLPRDSY--LQGYFNNISEHLRIGPPLY-------- 877 (1268)
Q Consensus 835 ~~k-------------------------~~~~~I~~gl--dq~~~lP~dSy--l~~yf~~~~~~~~~g~pvy-------- 877 (1268)
.++ -++|.++.|- .+....|.-|- ..+.-+.+++.+..-|.+.
T Consensus 522 ~l~~p~~vl~~A~~~~~~s~~l~~~lG~eF~P~l~Eg~l~~~~~~~Pg~Sl~~~~~m~~~~e~~ik~~PeV~~V~~k~Gr 601 (1027)
T COG3696 522 VLKLPKLVLLGAVLSLVASLVLLPKLGREFLPELNEGDLVYMPLTIPGVSLDEALRMLQAIERAIKKFPEVERVFGKTGR 601 (1027)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHhcchhcCCCCCcCceeeeeccCCCCCHHHHHHHHHHHHHHHhcCcchheeeecccc
Confidence 111 2456666663 34555565442 2233334444333223333
Q ss_pred ----------------EEEecC-CCCchhHhhhhhhcccccCcchHHHHHHHhcc-CCCCcc-ccCCCCCcHHHHHHhhc
Q 000819 878 ----------------FVVKNY-NYSSESRQTNQLCSISQCDSNSLLNEISRASL-IPQSSY-IAKPAASWLDDFLVWIS 938 (1268)
Q Consensus 878 ----------------~Vv~~~-d~~~~~~~~~~ic~~~~c~~~sl~~~i~~~~~-~~~~s~-i~~~~~sWlddf~~~l~ 938 (1268)
+..++. ++.++. +.+.+.+++++.-+ .|...+ ...|.+--+|+.+.=++
T Consensus 602 Ae~~tD~~~~n~~et~I~Lkp~~eW~~~~------------t~~~lie~l~~~~~~lpG~~~~~tqPI~~R~delltGVr 669 (1027)
T COG3696 602 AETATDPAPLNMIETFIELKPQEEWKDKK------------TRDELIEELRKTLEQLPGLANSFTQPIRMRIDELLTGVR 669 (1027)
T ss_pred CCCCCCCCCcccceeeEEecchhhCCCcc------------cHHHHHHHHHHHHHhCCCcccccccchhHHHHHHHhccc
Confidence 233321 111110 22456677766533 555432 23343333444332111
Q ss_pred ccccccccccCCC---------------CCCCCCCCCCCCCCCCCCCCCCCcccCCCcccc---cCC--cCCCCCChhHH
Q 000819 939 PEAFGCCRKFTNG---------------SYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFH---HSD--LLKDRPSTIQF 998 (1268)
Q Consensus 939 ~~~~~cc~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~---~~~--~~~~~P~~~~F 998 (1268)
... --+.++++ .-.|...+- ..++ .. -.+... +++ -.+|. +-+++
T Consensus 670 sdv--aIKvfG~Dl~~L~~la~qI~~~lk~v~Ga~dv---~~E~-----~~----g~~~l~I~~dReaaaRyGl-~v~dv 734 (1027)
T COG3696 670 SDL--AIKVFGDDLAELNELAEQIEEVLKTVPGAVDV---LAER-----QE----GGPYLQIDPDREAAARYGL-TVGDV 734 (1027)
T ss_pred cce--EEEEeCCCHHHHHHHHHHHHHHHhcCcchhhh---eeee-----cC----CceeEEEecCHHHHHHhCC-CHHHH
Confidence 100 00001110 000000000 0000 00 000000 000 00111 01222
Q ss_pred HhhHHHHHhcCCCccccCCCC---------CCcccccc------ccC---------------CCCce--EE---EEEEEE
Q 000819 999 KEKLPWFLNALPSASCAKGGH---------GAYTNSVD------LKG---------------YENGI--VQ---ASSFRT 1043 (1268)
Q Consensus 999 ~~~L~~fl~~~p~~~c~~gg~---------~~y~~~v~------~~~---------------~~~~~--I~---as~f~~ 1043 (1268)
.+.+..-+...+-..-.+|.+ .+|.+++. +.. +.++. |. ..|...
T Consensus 735 ~~~v~tAlgG~~v~~v~~g~~rf~vvvrlp~~~R~~~~~i~~L~i~~p~g~~ipL~~VA~I~~~~Gp~~i~rEn~~r~~v 814 (1027)
T COG3696 735 QDVVKTALGGAVVGEVFEGIRRFPVVLRLPEDYRNSIEALRNLPIPTPNGQQIPLADVADIEVVTGPNQIKRENGKRRSV 814 (1027)
T ss_pred HHHHHHHhCCceeeeeeccceecceEEEcchhhccCHHHHhcccccCCCCCEeehhHheeeEeccCcchhccccCeeEEE
Confidence 222221121111000000000 11222111 000 00000 00 112222
Q ss_pred EecccCchhhHHHHHHHHHH-HHHhhcccCCceeeeccceeehhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh
Q 000819 1044 YHTPLNRQIDYVNSMRAARE-FSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTA---LINLAIAIGAVFVVCLITTCSFW 1119 (1268)
Q Consensus 1044 ~~~~l~~~~d~~~~~~~~~~-i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~---~~~l~~al~~v~vv~~ll~~s~~ 1119 (1268)
-..+.+ ..|....++++++ ++++++ .|.|.++.|..|+++..+-+ ....-+++++||+++++.|+|++
T Consensus 815 V~~nvr-gRDlgSfV~eaq~~i~~~V~-------LP~GY~i~~gGQFE~~qrA~~~L~vvvP~~lllIfvLl~~~f~sv~ 886 (1027)
T COG3696 815 VYANVR-GRDLGSFVEEAQKAIAEKVK-------LPPGYYIEWGGQFENLQRANKRLKVVVPVSLLLIFVLLYFAFKSVG 886 (1027)
T ss_pred EEEccc-cCcHHHHHHHHHHHHHhhCC-------CCCceEEEecchhHHHHHHhhcceehHHHHHHHHHHHHHHHHccch
Confidence 222222 3344455555543 445543 35566666777777665432 23345889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc---CCCHHHHHHHHHHHHHHHHHH
Q 000819 1120 SSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFS 1196 (1268)
Q Consensus 1120 ~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~---~~~~~~r~~~al~~~g~~V~~ 1196 (1268)
.+++++..++++.++-+-.|++.|..++..+++..+--.|.++.+.+.+...+... ..+-+|++.++-.+=-.|+++
T Consensus 887 ~alli~~~lP~Al~GGv~~l~l~G~~lSvas~vGFiaL~GVA~lnglvmv~~~~~~~~~~~~l~eaI~~GA~~Rvrp~lM 966 (1027)
T COG3696 887 EALLIFSNLPFALIGGVIALALRGFNLSVAAAVGFIALFGVAVLNGVVMVSYIRQALQQGMSLKEAIMEGAVERVRPKLM 966 (1027)
T ss_pred HhHHHHhcCcHHHhhhHHHhhhcCceEeehhhhhHHHHHHHHHhcchhhHHHHHHHHHcCCcHHHHHHHhHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999998766543 346789999999999999999
Q ss_pred HHHHHHHHHHHhhhcccchhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1197 GITLTKLVGVIVLCFSRTEVFVVYY--FQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1197 g~~lTt~~G~~vL~fs~~~i~~~f~--f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
++ ++..+|+++++++++.--++.- -..++..++.+-+.+|+++|+++.+++.+.
T Consensus 967 Ta-~~~~lGlvPi~~~~g~GsEV~~plA~vviGGl~tst~LtL~vlPaly~~~~~~~ 1022 (1027)
T COG3696 967 TA-LVILLGLLPILWATGAGSEVMRPLAIVVIGGLVTSTALTLLVLPALYALFGKRR 1022 (1027)
T ss_pred HH-HHHHHhhhhhhhhcCCchHhhccchheeEcceeHHHHHHHHHHHHHHHHHHHhh
Confidence 98 5889999999999865544430 111223455677788999999999886543
No 46
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.57 E-value=5.8e-14 Score=150.74 Aligned_cols=128 Identities=15% Similarity=0.238 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeeh
Q 000819 1091 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1170 (1268)
Q Consensus 1091 ~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~ 1170 (1268)
...++...+++++++++++++++++| ++.++.++++++..++.++|+|+++|+++|..+++.+++++|++||++||+..
T Consensus 44 ~~~~~~~~~l~~a~~lv~l~l~~~~r-~~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~~s~~glil~iGi~Vd~aIvv~e 122 (192)
T TIGR00916 44 ELIKAGIIALLIGLVLVLLYMLLRYE-WRGAIAAIAALVHDVILILGVLSLFGATLTLPGIAGLLTIIGYSVDDTVVIFD 122 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhhcCeEEehH
Confidence 45567788889999999999998888 78888888888888999999999999999999999999999999999999997
Q ss_pred hhhc-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Q 000819 1171 AFSV-----SSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY 1220 (1268)
Q Consensus 1171 ~f~~-----~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f 1220 (1268)
+|++ ++.++++++.++.++.++|++.+. +||++||++|+|...+.++.|
T Consensus 123 ~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~tt-lTtii~f~pl~~~~~~~~~~~ 176 (192)
T TIGR00916 123 RIREELRKYKGRTFREAINLGINQTLSRIIDTN-VTTLLAVLALYVFGGGAIKGF 176 (192)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHH
Confidence 7765 345889999999999999999986 699999999999988887766
No 47
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.54 E-value=4.6e-13 Score=152.47 Aligned_cols=158 Identities=12% Similarity=0.180 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
..+.+.....+.++++++++.+.+.++ ++.+++++++++..++.++|+|.++|+++|..+++.+++.+|++||++||+.
T Consensus 123 ~~~~~~~~~a~~~al~~i~i~l~~~F~-~~~~l~~ilal~~~v~~~lg~~~l~g~~l~~~siaall~liG~sVnd~Ivv~ 201 (289)
T PRK13022 123 KELAQKGLLALLVALVGILIYIAFRFE-WRFALGAIIALLHDVIITLGIFSLFQIEFDLTVIAALLTIIGYSLNDTVVVF 201 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHheeceEEEe
Confidence 556677788888888888888887775 8899999999999999999999999999999999999999999999999999
Q ss_pred hhhhcc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1170 ~~f~~~-----~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
.++++. +++..+++.+|.++.++|++.+. +||++|+++|++...+.++.|- .+++..+++|.+.++++.|+++
T Consensus 202 drire~~~~~~~~~~~~av~~a~~~~~~~~l~Ts-lTTl~~~l~L~~~g~~~i~~fa-~~l~~Gli~~~~~sl~i~p~l~ 279 (289)
T PRK13022 202 DRIRENFRKIRRKTFAEIINLSINQTLSRTIITS-LTTLLVVLALYLFGGGTLHDFA-LALLIGIIVGTYSSIFVASPLL 279 (289)
T ss_pred eHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 777653 25788999999999999999987 6999999999999988888874 4445678899999999999999
Q ss_pred hhhCCC
Q 000819 1245 SVFGPP 1250 (1268)
Q Consensus 1245 s~~gp~ 1250 (1268)
.+++.+
T Consensus 280 ~~~~~~ 285 (289)
T PRK13022 280 LWLGVR 285 (289)
T ss_pred HHHhhc
Confidence 998654
No 48
>TIGR00914 2A0601 heavy metal efflux pump (cobalt-zinc-cadmium). This model represents a family of H+/heavy metal cation antiporters. This family is one of several subfamilies within the scope of pfam model pfam00873.
Probab=99.54 E-value=2.1e-13 Score=181.52 Aligned_cols=187 Identities=14% Similarity=0.116 Sum_probs=144.8
Q ss_pred hHHHHHHHHHHHHHhhccc--CCceeeeccceeehhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 000819 1053 DYVNSMRAAREFSSRVSDS--LQMEIFPYSVFYMYFEQY---LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLV 1127 (1268)
Q Consensus 1053 d~~~~~~~~~~i~~~~~~~--~~~~v~~~~~~~v~~eq~---~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~ 1127 (1268)
+..+..+.+++..+++.+. .|+++. +.+||. ...+++...++++++++++++++++++|++.++++.++
T Consensus 301 n~~~v~~~V~~~l~~~~~~lP~g~~~~------~~~d~s~~i~~~i~~l~~~l~~g~~lv~~vl~lfl~~~r~~liv~~~ 374 (1051)
T TIGR00914 301 NSRTVAQAVGDKLETINKTLPEGVEIV------TTYDRSQLVDAAIATVKKNLLEGALLVIVILFLFLGNIRAALIAATV 374 (1051)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCcEEE------EecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3344555555555554321 244432 223443 34556788889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehh---hhcc-----C-----CCHHHHHHHHHHHHHHHH
Q 000819 1128 LTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHA---FSVS-----S-----GDKNQRMKEALGTMGASV 1194 (1268)
Q Consensus 1128 i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~---f~~~-----~-----~~~~~r~~~al~~~g~~V 1194 (1268)
+++++++.+.+|+++|++||.+|+. .+++|+.||++|++..+ ++++ + .++.+++.++.+++++|+
T Consensus 375 iP~s~~~~~~~m~~~g~sln~~sl~--~l~iGilVDdaIVvvE~i~r~~~~~~~~~g~~~~~~~~~~A~~~g~~~~~~pi 452 (1051)
T TIGR00914 375 IPLSLLITFIGMVFQGISANLMSLG--ALDFGLIVDGAVVIVENAHRRLAEAQHHHGRQLTLKERLHEVFAASREVRRPL 452 (1051)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHH--HHHHHhhhcCcEEeehHHHHHHHhcccccccccccccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 56779999999999832 3222 1 357799999999999999
Q ss_pred HHHHHHHHHHHHHhhhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 000819 1195 FSGITLTKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249 (1268)
Q Consensus 1195 ~~g~~lTt~~G~~vL~fs~~---~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp 1249 (1268)
+.+. +||+++|+|++|.++ .+++.+ ...++..+++|++.+|+++|++++++.+
T Consensus 453 l~st-lTti~~flPl~~~~g~~g~~~~~~-~~~v~~~l~~Sll~al~~~P~l~~~~~~ 508 (1051)
T TIGR00914 453 IFGQ-LIITLVFLPIFTLTGVEGKMFHPM-AFTVVLALAGAMILSLTFVPAAVALFIR 508 (1051)
T ss_pred HHHH-HHHHHHHHHHHHccchHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9885 799999999999875 344444 3444566889999999999999998854
No 49
>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family.
Probab=99.49 E-value=1.9e-11 Score=159.19 Aligned_cols=153 Identities=18% Similarity=0.133 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccc
Q 000819 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1268)
Q Consensus 634 ~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~ 713 (1268)
..+.++.+.||+..++.+++. +.++..++++++.++..+|+|+++|++++. ++.+.-.+.+|+|||+
T Consensus 969 ~~l~~al~~~fvV~~lll~~~------------~~a~iv~l~v~~i~v~v~G~M~lwgI~Lna-VS~vnLimsIGisVef 1035 (1145)
T TIGR00918 969 LSISVVLACTFLVCALLLLNP------------WTAGLIVLVLALMTVELFGMMGLLGIKLSA-IPVVILIASVGIGVEF 1035 (1145)
T ss_pred HHHHHHHHHHHHHHHHHHcch------------HHHHHHHHHHHHHHHHHHHHHHHHcCCccH-HHHHHHHHHHhhhhhh
Confidence 345666677777777776653 346677788888999999999999999997 5777777889999999
Q ss_pred eehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 714 MCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP-ACRVFSMFAALAVLLDFLLQITAFVAL 792 (1268)
Q Consensus 714 ~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p-~vr~F~i~aa~~v~~~~l~~lt~fpal 792 (1268)
..|+.++|.... .+.++|+.+||.++|.|++.+++||++|.++++++++. .++.|+...++.|+++++-.++++|.+
T Consensus 1036 saHI~~~F~~~~--~~r~eR~~~AL~~~G~pVl~g~lTT~lGvlvLafs~s~~~~~~Ffk~~~l~V~~g~lHgLv~LPVL 1113 (1145)
T TIGR00918 1036 TVHIALGFLTAI--GDRNRRAVLALEHMFAPVLDGALSTLLGVLMLAGSEFDFIVRYFFAVLAVLTCLGVLNGLVLLPVL 1113 (1145)
T ss_pred hHHHHHHHHhcC--CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998542 35799999999999999999999999999999999987 889999999999999999999999999
Q ss_pred HHHhhhccc
Q 000819 793 IVFDFLRAE 801 (1268)
Q Consensus 793 L~l~~rr~~ 801 (1268)
|++.+.+.+
T Consensus 1114 LS~~Gp~~~ 1122 (1145)
T TIGR00918 1114 LSMFGPEPE 1122 (1145)
T ss_pred HHhcCCccc
Confidence 999887654
No 50
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.48 E-value=2.3e-12 Score=144.00 Aligned_cols=144 Identities=16% Similarity=0.208 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehh
Q 000819 1092 IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHA 1171 (1268)
Q Consensus 1092 i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~ 1171 (1268)
+.+..+..++++++++++.+.+.++ ++.+++++++++..++..+|+|+++|+++|..+++.+++++|++||++|++..+
T Consensus 96 ~~~~~~~~~~la~i~i~l~l~~~f~-~r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~iGi~Vdd~Ivv~d~ 174 (246)
T TIGR00966 96 LARKAVLALLAALVLILIYITVRFE-WRFALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTIIGYSINDTVVVFDR 174 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHhccCeEEEehH
Confidence 3334444444444444444444444 899999999999999999999999999999999999999999999999999966
Q ss_pred hhcc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1172 FSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLV 1238 (1268)
Q Consensus 1172 f~~~-----~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li 1238 (1268)
+++. ++++.+++.+|.+++++|++.+. +|+++|+++|++...+.++.|- .+++..+++|.+.+++
T Consensus 175 i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~tt-ltti~~flpl~~~~g~~~~~~a-~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 175 IRENLRKYTRKTFTEVINLSINQTLSRTINTS-LTTLLAVLALYVFGGGVIKDFS-LALLVGVIVGTYSSIF 244 (246)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6542 35788999999999999999987 6999999999999887777663 2333345555555554
No 51
>KOG1934 consensus Predicted membrane protein (patched superfamily) [General function prediction only]
Probab=99.48 E-value=2.4e-11 Score=154.37 Aligned_cols=373 Identities=16% Similarity=0.177 Sum_probs=235.7
Q ss_pred HHHHHhchhhhccchHHHH--HHHHHHHHHhhccccceeccCCcccccCCCChHHHHHHhhhccCCCCCceeEEEEEecc
Q 000819 372 NFYRKYGKWVARNPTLVLS--LSMALVLLLCLGLIRFEVETRPEKLWVGPGSRAAEEKLFFDSHLAPFYRIEELILATIP 449 (1268)
Q Consensus 372 ~~f~~~g~~var~P~~vl~--~~llv~~~l~~Gl~~i~~etdp~~lw~~~~S~a~~e~~~fd~~Fgp~~r~eqiii~~~~ 449 (1268)
.+..+++.|+.+.+..+++ +.++-..++.+|..+++.+-||.++ ++.||+..+-.+..++.|-+.+..-+++|.++
T Consensus 456 ~~~~~y~~fi~~~~vr~~vil~~~~Y~~~a~yG~~~i~~gl~~~kl-~~~dS~l~~~~~~~~~~~~~~~~~v~v~V~np- 533 (868)
T KOG1934|consen 456 FFLDKYAPFILNPKVRLLVILLYLVYLAFAIYGCLNIKEGLDPSKL-LPEDSPLVKSLRLQEKYFWEYGQQVAVFVNNP- 533 (868)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhheeccCCCCHHHc-ccccCcchHHHHHHHHHhhccCceEEEEEcCC-
Confidence 4455678887765554433 3334445678899999999999999 48899988887777777777655555666532
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcccccCccccccccccccCCCCcccchhhhhhhcCCCCC-C-CCCCccccc
Q 000819 450 DTTHGNLPSIVTESNIKLLFEIQKKIDGLRANYSGSMISLTDICMKPLGQDCATQSVLQYFKMDPKNF-D-DFGGVEHVK 527 (1268)
Q Consensus 450 ~~~~~~g~~vl~~e~L~~~~~lq~~I~~i~~~~~~~~~sl~DiC~kp~~~~C~v~S~~~yf~~~~~~~-~-~~~~~~~l~ 527 (1268)
+++-+++..+++.++-++++..+... |+. +..+-+.+-.+|........ + +.++..++.
T Consensus 534 -------~dl~~~~~~~~~~~~~~~fE~~~~~~-G~~-----------sT~~wlr~y~~~~~~~~~~~~~~~~~~~~~~~ 594 (868)
T KOG1934|consen 534 -------PDLSNPENRDNLNELVSEFESTPYSM-GRE-----------STKFWLREYLNFLFEKNAELEDNDDEFYDHLY 594 (868)
T ss_pred -------ccCCCHHHHHHHHHHHHHHhcCCccc-Ccc-----------cchhHHHHHHHHHhhhcccccCCCcchhhhhH
Confidence 45888999999999999998765321 111 11122223333311111111 1 111111111
Q ss_pred ccccccCCccccccccCCCCCCCcccCCcccCcccceeEEEEEEEeeccccccCcchHHHHHHHHHHHHHHHhhcccccc
Q 000819 528 YCFQHYTSTESCMSAFKGPLDPSTALGGFSGNNYSEASAFVVTYPVNNAVDREGNETKKAVAWEKAFVQLAKDELLPMVQ 607 (1268)
Q Consensus 528 ~~~~~~~s~~~cl~~~g~Pl~~~~~lGg~~~~~~~~A~alvit~~l~n~~~~~~~~~~~a~~wE~~~~~~~~~~~~~~~~ 607 (1268)
.-+.. . +. ..+......++.. .++-..-.+++.++...+..+.+ +..+..+.|++.. +++
T Consensus 595 ~~fl~--~-----~~-~~~~~~di~~~~~-~~~~~~i~~f~f~~~~~~~~~~~-~~~~~~~~~R~ia----~~~------ 654 (868)
T KOG1934|consen 595 ESFLK--S-----PE-FSFWRNDIVFDNK-SDEETIIFAFRFTIGLTNLTKWN-ERTRLLETWRKIA----DEY------ 654 (868)
T ss_pred HHHhc--c-----cc-cccCccceEeccC-CCCCceEEEEEEEEEEeccCCHH-HHHHHHHHHHHHH----hhc------
Confidence 11000 0 00 1122222332221 11112234566666666643311 1223334443322 222
Q ss_pred CCCeEEEEccc-hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLAFSSE-SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 608 ~~~l~v~f~~~-~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl 686 (1268)
+.+.+....+ ....|.+......-+..++++.+.|++...+.+.+. ...+...+.++.--+..+|+
T Consensus 655 -~~fnvtvf~~~~~f~Dq~~~v~~~ti~~~~~a~i~M~~v~~lfIp~~------------~~~~~it~si~SI~~GV~G~ 721 (868)
T KOG1934|consen 655 -SDFNVTVFDPSFVFLDQYLSVVPVTIQSIVIALICMFLVCFLFIPNP------------LCVFWITLSIVSINIGVFGF 721 (868)
T ss_pred -cCCCeEEecCchHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhCch------------HHHHHHHHHHhheeehHhhh
Confidence 3444443333 344666666555556677888888888766665542 11222222222222456788
Q ss_pred HHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchH
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1268)
Q Consensus 687 ~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~ 766 (1268)
|++.|+++++ ++++.-.+-+|-.||+.-|+..+|.+.....++.+|+..|++.+|.|++-++++|++|.+.+++.+...
T Consensus 722 lslW~V~LDp-ISmi~iiMsIGFSVD~~AHi~yhy~~~~~~~t~~~Rv~~aL~~vgwPv~Qa~lSTiL~v~pL~~V~sYm 800 (868)
T KOG1934|consen 722 LSLWGVDLDP-ISMITIIMSIGFSVDFSAHVAYHYYQSRKSSTPRERLRSALSAVGWPVLQAGLSTILGVLPLLFVPSYM 800 (868)
T ss_pred hHHhcCCccH-HHHHHHHHhCCceeeehhheeeeeEecCCCCCHHHHHHHHHHhhhhHHHhhhhHHHHHHHHHHhchHHH
Confidence 8999999998 567777777888899999999888776544689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 000819 767 CRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1268)
Q Consensus 767 vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr 799 (1268)
++.|.-...+.+.+.++=-+.++|.+|++..+.
T Consensus 801 v~vF~KTv~LVv~~GllHGLv~LPviLs~f~~~ 833 (868)
T KOG1934|consen 801 VQVFFKTVVLVVTLGLLHGLVFLPVILSLFPPI 833 (868)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999987653
No 52
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.45 E-value=2.8e-12 Score=151.86 Aligned_cols=151 Identities=16% Similarity=0.243 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
...++..+..+++++++|+++++++++ +.++++.+++++.++.++|+|+++|++||..++..+++++|++||++|++.
T Consensus 244 ~~~i~~~~~a~~ig~ilV~l~~~~~yr--~~gl~a~ial~~~v~~~l~~~~l~g~~l~l~siaglil~iG~~VD~~Ivi~ 321 (397)
T TIGR01129 244 ADSIEAGIKAGLIGLVLVLVFMILYYR--LFGLIAAIALVINIVLILAILSAFGATLTLPGIAGLILTIGMAVDANVLIY 321 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHhheeeeceEEEe
Confidence 445667888889999999999999998 678899999999999999999999999999999999999999999999999
Q ss_pred hhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1170 ~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
.+++++ +++..+++.++.++.+++++.+. +|+++++++|++.....++.|- .++++.+++|++.++++.+.++
T Consensus 322 erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~-lTtlia~l~L~~~g~g~~~~fA-~tl~igii~s~~~sl~vtr~~~ 397 (397)
T TIGR01129 322 ERIKEELRLGKSVRQAIEAGFERAFSTIFDAN-ITTLIAALILYVFGTGPVKGFA-VTLAIGIIASLFTALVFTRLLL 397 (397)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHhhC
Confidence 877754 35788999999999999999986 6999999999987767778773 4455678899999999998764
No 53
>PRK13024 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.44 E-value=3e-12 Score=162.94 Aligned_cols=189 Identities=14% Similarity=0.192 Sum_probs=150.5
Q ss_pred HHHHHHHHhhccc-CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000819 1059 RAAREFSSRVSDS-LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMG 1137 (1268)
Q Consensus 1059 ~~~~~i~~~~~~~-~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G 1137 (1268)
++++++++.++.. ...+....+...+--..-....+..+..+++++++|++++++++++ .++++++++++.++.++|
T Consensus 230 ~ea~~la~~l~~g~lp~~~~~~~~~~vgptlg~~a~~~~~~a~~ial~lV~i~l~~~fr~--~~lia~ial~~~v~~~l~ 307 (755)
T PRK13024 230 EEAKDLANLLNAGALPAPLKIIESRSVGPTLGQDAIDAGIIAGIIGFALIFLFMLVYYGL--PGLIANIALLLYIFLTLG 307 (755)
T ss_pred HHHHHHHHHHHhccccCCcccccceEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHH
Confidence 4455555555432 1222222233333333334566777888889999999999998886 688888889999999999
Q ss_pred HHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 000819 1138 VMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRT 1214 (1268)
Q Consensus 1138 ~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~ 1214 (1268)
+|+++|++||..++..+++++|++||++||+..+++++ ++++.+++.++.++.++|++.+. +||++|+++|++...
T Consensus 308 ~l~l~g~~l~l~siaglil~iGi~Vd~~Ivi~eri~e~l~~g~~~~~Ai~~a~~~~~~~il~t~-lTTii~~lpL~~~g~ 386 (755)
T PRK13024 308 ALSSLGAVLTLPGIAGLVLGIGMAVDANVLIFERIKEELRKGKSLKKAFKKGFKNAFSTILDSN-ITTLIAAAILFFFGT 386 (755)
T ss_pred HHHHHCCCccHHHHHHHHHHHHHHHhCcEEehHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999888764 35788999999999999999987 699999999998777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1215 EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1215 ~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
..++.| ..++++.+++|++.+++++|+++.++.++.
T Consensus 387 g~~~~f-aitl~~Gli~s~~~sl~v~p~l~~~~~~~~ 422 (755)
T PRK13024 387 GPVKGF-ATTLIIGILASLFTAVFLTRLLLELLVKRG 422 (755)
T ss_pred chhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 778877 345556788999999999999999987654
No 54
>PRK13022 secF preprotein translocase subunit SecF; Reviewed
Probab=99.44 E-value=5.7e-12 Score=143.55 Aligned_cols=167 Identities=11% Similarity=0.237 Sum_probs=144.2
Q ss_pred chhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchh
Q 000819 618 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697 (1268)
Q Consensus 618 ~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i 697 (1268)
+.++.+|+.+. -...+++++++|++|+.+.++ + ..++..++.+..+++.++|++.++|++++.
T Consensus 118 g~~vg~~~~~~---~~~a~~~al~~i~i~l~~~F~-~------------~~~l~~ilal~~~v~~~lg~~~l~g~~l~~- 180 (289)
T PRK13022 118 GPQVGKELAQK---GLLALLVALVGILIYIAFRFE-W------------RFALGAIIALLHDVIITLGIFSLFQIEFDL- 180 (289)
T ss_pred ChhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-
Confidence 35566666653 344567888999999887653 2 247889999999999999999999999997
Q ss_pred hhhHHHHHhhhccccceehHHHHHHHhc---CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 000819 698 IMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (1268)
Q Consensus 698 ~~~v~pflvl~iGvd~~~~l~~~~~~~~---~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~a 774 (1268)
.+.+...+++|+++||++++.+++++.. ++.+.++++.+++.+...++++|++|++++|+.+.+...+.++.|++..
T Consensus 181 ~siaall~liG~sVnd~Ivv~drire~~~~~~~~~~~~av~~a~~~~~~~~l~TslTTl~~~l~L~~~g~~~i~~fa~~l 260 (289)
T PRK13022 181 TVIAALLTIIGYSLNDTVVVFDRIRENFRKIRRKTFAEIINLSINQTLSRTIITSLTTLLVVLALYLFGGGTLHDFALAL 260 (289)
T ss_pred HHHHHHHHHHHHheeceEEEeeHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 5667777889999999999999999863 3688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 775 ALAVLLDFLLQITAFVALIVFDFLRAE 801 (1268)
Q Consensus 775 a~~v~~~~l~~lt~fpalL~l~~rr~~ 801 (1268)
.+|++++++.++++.|+++.+..+|.+
T Consensus 261 ~~Gli~~~~~sl~i~p~l~~~~~~~~~ 287 (289)
T PRK13022 261 LIGIIVGTYSSIFVASPLLLWLGVRRE 287 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999998766543
No 55
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.44 E-value=4.7e-12 Score=153.13 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeeh
Q 000819 1091 DIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITH 1170 (1268)
Q Consensus 1091 ~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~ 1170 (1268)
..++..+..+++++++|+++++++++ +.++++.+++++.++.++|+|.++|++||..++..+++++|++||++|.+..
T Consensus 330 ~~i~~~~~A~lig~ilV~i~m~~~yr--~~glia~iaL~~~v~~~l~~~~l~g~~l~l~siaGlil~iG~~VD~~IVI~E 407 (498)
T PRK05812 330 DSIRAGLIAGLIGLALVLLFMILYYR--LFGLIANIALVANLVLILAVLSLLGATLTLPGIAGIVLTIGMAVDANVLIFE 407 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHhheeEEeceEEEeH
Confidence 45667788888999999999998888 5789999999999999999999999999999999999999999999999998
Q ss_pred hhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1171 AFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1247 (1268)
Q Consensus 1171 ~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~ 1247 (1268)
+++++ +++..+++.++.++.+.+++.+. +||++++++|++.....++.|- .++++.+++|++.++++.|+++.++
T Consensus 408 rIreel~~g~~~~~Ai~~~~~~~~~~Il~s~-lTTlia~l~L~~~g~g~i~~fA-itl~iGii~s~~~sl~vtp~l~~~~ 485 (498)
T PRK05812 408 RIREELREGRSLRSAIEAGFKRAFSTILDSN-ITTLIAAIILYALGTGPVKGFA-VTLGIGILTSMFTAITVTRALVNLL 485 (498)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88754 35788999999999999999886 6999999999987766778773 4445678899999999999999965
Q ss_pred C
Q 000819 1248 G 1248 (1268)
Q Consensus 1248 g 1248 (1268)
-
T Consensus 486 ~ 486 (498)
T PRK05812 486 Y 486 (498)
T ss_pred H
Confidence 3
No 56
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.43 E-value=8.7e-12 Score=142.16 Aligned_cols=157 Identities=19% Similarity=0.261 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
....+.....+++|+++|++++++.+++++.++.++++++..+++++|+|+++|+++|..++..+++.+|++||++|++.
T Consensus 130 ~~~~~~~~~al~~alilI~i~l~l~F~s~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~~i~gll~iiG~sVdd~IVv~ 209 (292)
T PRK08578 130 SQFQEQALKAVGFAFIGMAVVVFLIFRTPVPSLAVILSAFSDIIIALALMNLFGIELSLATVAALLMLIGYSVDSDILLT 209 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccHHHHHHHHHHHheeecCcEEEe
Confidence 44667888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000819 1170 HAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFS----RTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLS 1245 (1268)
Q Consensus 1170 ~~f~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs----~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs 1245 (1268)
.++++..+++++++.++++. + +.. ++||++|+++|++. ..+.++.|- ..++..++++++.++++.+.++.
T Consensus 210 dri~~~~~~~~eai~~a~~~-~--i~t--slTTl~~~lpL~l~~~~~g~~~~~~fa-l~l~~Gli~s~~~tl~~~~~~l~ 283 (292)
T PRK08578 210 TRVLKRRGTFDESIKRAMRT-G--ITM--TLTTIAAMAVLYIVSTIPQAEVLANIA-AVLIFGLLADLMNTWLLNAGILR 283 (292)
T ss_pred hHHHHccCCHHHHHHHHHHH-H--HHH--HHHHHHHHHHHHHHHhcccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877667888999999854 3 443 36899999999765 466777773 34445688999999999999998
Q ss_pred hhCCCCc
Q 000819 1246 VFGPPSR 1252 (1268)
Q Consensus 1246 ~~gp~~~ 1252 (1268)
+.+.+.+
T Consensus 284 ~~~~~~~ 290 (292)
T PRK08578 284 WYKTEGK 290 (292)
T ss_pred HHHhccc
Confidence 8765443
No 57
>PRK14726 bifunctional preprotein translocase subunit SecD/SecF; Provisional
Probab=99.40 E-value=1e-11 Score=157.47 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=150.9
Q ss_pred HHHHHHHHHhhccc-CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000819 1058 MRAAREFSSRVSDS-LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLM 1136 (1268)
Q Consensus 1058 ~~~~~~i~~~~~~~-~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~ 1136 (1268)
.+++++++..+... +.+++.......+=-..-...++..+.++++++++|+++++++++- .++++.+++++.++.++
T Consensus 335 ~~eA~~La~~Lr~GaLp~~~~~~~~~~Vgpslg~~~i~~~~~aliig~ilV~l~m~lfyr~--~glia~ial~~~vl~~l 412 (855)
T PRK14726 335 EQGANDLAVLLRAGALPATLTVVEERTVGPGLGADSIAAGLVAGLIAAILVAALMIGFYGF--LGVIAVIALIVNVVLII 412 (855)
T ss_pred HHHHHHHHHHHhcCCCCcccccccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 34566677666531 1222222222222223334556677888888999998888888873 78999999999999999
Q ss_pred HHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 1137 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1213 (1268)
Q Consensus 1137 G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~ 1213 (1268)
|+|.++|++||..++..+++++|++||++|.+..+.+++ .+++.+++..+.++++.+++.+. +||++++++|.|..
T Consensus 413 ~~l~l~g~tLnl~~IaGiil~IGm~VD~~IVI~ErIreel~~G~s~~~Ai~~g~~~a~~~Il~s~-lTTlia~lpL~~~g 491 (855)
T PRK14726 413 AVLSLLGATLTLPGIAGIVLTIGMAVDSNVLIYERIREEEKTGHSLIQALDRGFSRALATIVDAN-VTILIAAVILFFLG 491 (855)
T ss_pred HHHHHhCcceeHHHHHHHHHHHHhhhCceEEeHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999777665 35788999999999999999986 69999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1214 TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1214 ~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
+..++.|- .++.+.+++|++.++++.|+++.++.++.
T Consensus 492 ~~~ikgFA-vtl~igii~Sl~~Al~vtp~l~~~~l~~~ 528 (855)
T PRK14726 492 SGAVRGFA-VTLAVGILTTVFTAFTLTRSLVAVWLRRR 528 (855)
T ss_pred CcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98898873 45556788999999999999999885543
No 58
>TIGR00916 2A0604s01 protein-export membrane protein, SecD/SecF family. The SecA,SecB,SecD,SecE,SecF,SecG and SecY proteins form the protein translocation appartus in prokaryotes. This family is specific for the SecD and SecF proteins.
Probab=99.37 E-value=5.1e-12 Score=135.78 Aligned_cols=137 Identities=13% Similarity=0.184 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccce
Q 000819 635 TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNM 714 (1268)
Q Consensus 635 ~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~ 714 (1268)
.+.++++++++++.+.+| + ..++..++.+..++++++|+|+++|++++. .+.+.+.+++|+++||.
T Consensus 52 ~l~~a~~lv~l~l~~~~r-~------------~~~l~~~~~i~~~i~~t~g~m~l~G~~ln~-~s~~glil~iGi~Vd~a 117 (192)
T TIGR00916 52 ALLIGLVLVLLYMLLRYE-W------------RGAIAAIAALVHDVILILGVLSLFGATLTL-PGIAGLLTIIGYSVDDT 117 (192)
T ss_pred HHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhhcCe
Confidence 366777888887777654 2 235666777788899999999999999997 67788888999999999
Q ss_pred ehHHHHHHHh-c--CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHH
Q 000819 715 CILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQ 785 (1268)
Q Consensus 715 ~~l~~~~~~~-~--~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~ 785 (1268)
+|+++++++. + ++.+.++++.++.++.+++++.|++|++++|+.+.+++.+.+|.|++...+|++++++..
T Consensus 118 Ivv~e~~~~~~~~~~g~~~~~Av~~a~~~~~~~il~ttlTtii~f~pl~~~~~~~~~~~~~~~~~gl~~s~~~a 191 (192)
T TIGR00916 118 VVIFDRIREELRKYKGRTFREAINLGINQTLSRIIDTNVTTLLAVLALYVFGGGAIKGFALTLGIGVIAGTYSS 191 (192)
T ss_pred EEehHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHh
Confidence 9999999875 3 578999999999999999999999999999999999999999999999999999998764
No 59
>PRK13023 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.37 E-value=2.4e-11 Score=152.39 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=141.8
Q ss_pred HHHHHHHHHhhccc-CCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 000819 1058 MRAAREFSSRVSDS-LQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLM 1136 (1268)
Q Consensus 1058 ~~~~~~i~~~~~~~-~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~ 1136 (1268)
.+++++++..++.. +.+.+.......+-...-.......+...++++++|++.+++..+ ..++++.+++++.++.++
T Consensus 241 ~~eA~~la~~l~~GaLP~~~~~~~~~~VgptLG~~~~~~~~~A~ii~~~lV~lfm~~~Y~--~~glia~iaL~~~v~~tl 318 (758)
T PRK13023 241 LQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYG--ILGVIALVALVVNIIILT 318 (758)
T ss_pred HHHHHHHHHHHhcCCCCCCeeeeeeeccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 35566777766531 122222222222222222233344444555555555555555554 357888889999999999
Q ss_pred HHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 1137 GVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSR 1213 (1268)
Q Consensus 1137 G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~ 1213 (1268)
|+|.++|++||..++..+++++|++||++|++..+++++ +++..+++.++.++.++|++.+. +|+++++++|++..
T Consensus 319 ~~l~l~g~~Lnl~siaGlIL~IGm~VD~~Ivi~Erireel~~G~~~~~Av~~g~~~~~~~Il~s~-lTTlia~lpL~~~g 397 (758)
T PRK13023 319 AVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDAN-LTTLIAALVLFLLG 397 (758)
T ss_pred HHHHHHCCCccHHHHHHHHHHHHHhccCcEEEeeHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999888754 35788999999999999999987 69999999999988
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Q 000819 1214 TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1214 ~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~ 1251 (1268)
...++.| ..++++.++++++.++++.|+++.++....
T Consensus 398 ~g~ik~F-AitliiGi~~S~~~al~vt~~l~~~~~~~~ 434 (758)
T PRK13023 398 SGTVHGF-ALTVAIGIGTTLFTTLTFTRLLIAQWVRTA 434 (758)
T ss_pred chhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8888877 355566789999999999999999886543
No 60
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.29 E-value=7.9e-11 Score=142.88 Aligned_cols=159 Identities=15% Similarity=0.165 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHh-ccccchHHHHHHHHhhceeecceee
Q 000819 1091 DIWRTALINLAIAIGAVFVVCLITTCSF--WSSAIILLVLTMIVVDLMGVMAIL-KIQLNAVSVVNLVMAVGIAVEFCVH 1167 (1268)
Q Consensus 1091 ~i~~~~~~~l~~al~~v~vv~~ll~~s~--~~~li~~~~i~~~~v~~~G~M~l~-gi~LN~vS~v~l~iaiGi~VDfsiH 1167 (1268)
++-.+.+.+.+.|++++++++++++..+ +.++++.+++++.++.++|+|.++ |.+||..++..+++++|++||..|.
T Consensus 433 sLG~~~i~~gl~A~iig~vlV~lFm~~~Yr~~glva~iAL~~~l~l~l~vmsll~G~tLtLpgIAGiILtIGmaVDanIV 512 (604)
T PRK12933 433 SLGAENIENGFAALALGMGITLLFMALWYRRLGWVANVALIANMVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVL 512 (604)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhhccCcEE
Confidence 3556677777777777777776666555 678999999999999999999998 9999999999999999999999999
Q ss_pred eehhhhcc---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1168 ITHAFSVS---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1168 i~~~f~~~---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
+..+-+++ +++..+++..+.+++.++++.+. +||++.+++|.+..+..++.|- .++++.++.|++.++++.|+++
T Consensus 513 I~ERIrEel~~G~s~~~Ai~~G~~~a~~~Ildan-lTTlia~lpL~~~Ggg~ikgFA-vTL~iGIl~S~ftAi~vtr~l~ 590 (604)
T PRK12933 513 IFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDAN-FTTMITAVVLYSIGNGPIQGFA-LTLGLGLLTSMFTGIFASRALI 590 (604)
T ss_pred EehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99666544 45788999999999999999886 6999999999988888888874 4445678899999999999999
Q ss_pred hhhCCCC
Q 000819 1245 SVFGPPS 1251 (1268)
Q Consensus 1245 s~~gp~~ 1251 (1268)
.++-.+.
T Consensus 591 ~~~~~~~ 597 (604)
T PRK12933 591 NLVYGRD 597 (604)
T ss_pred HHHhccc
Confidence 8875443
No 61
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=99.28 E-value=1.5e-10 Score=142.05 Aligned_cols=193 Identities=18% Similarity=0.233 Sum_probs=143.2
Q ss_pred hhhHHHHHHH-HHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 000819 1051 QIDYVNSMRA-AREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLT 1129 (1268)
Q Consensus 1051 ~~d~~~~~~~-~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~ 1129 (1268)
..+.++++++ ++++.+.++ .|+++.++ |.-.+..+.-+.+..+++.-+.++|.+++++|++|+|++++++++++
T Consensus 295 t~~V~~aV~~kl~elk~~LP--~gVki~~~---ydRs~lid~AI~tv~k~LiEg~vlV~iVl~lFLgn~RsAli~~~~lP 369 (1027)
T COG3696 295 TREVIAAVKEKLEELKKSLP--EGVKIVTT---YDRSELIDKAIDTVSKTLIEGSVLVIIVLALFLGNFRSALIVIISLP 369 (1027)
T ss_pred hHHHHHHHHHHHHHHHhhCC--CCcEEEEE---eeHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3444444433 344444443 36666543 33333344556677888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee-hhh--hcc----CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1130 MIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT-HAF--SVS----SGDKNQRMKEALGTMGASVFSGITLTK 1202 (1268)
Q Consensus 1130 ~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~-~~f--~~~----~~~~~~r~~~al~~~g~~V~~g~~lTt 1202 (1268)
++++..|-+|..+|++.|.+|+-.+++++|+.||.+|.++ +.| .++ ...|-..+.+|.++++.|+++|. +-.
T Consensus 370 LS~li~f~~M~~~gi~~NlMSLGGlAIaiG~~VD~AIV~vEN~~r~L~~~q~~~~~r~~~I~~a~~EV~~~v~f~~-lII 448 (1027)
T COG3696 370 LSLLIAFIVMNFFGISANLMSLGGLAIAIGAMVDAAIVVVENAHRRLEENQHTNATRFHVIYDASKEVGRPVFFGL-LII 448 (1027)
T ss_pred HHHHHHHHHHHHcCCcchhhcccchheeeeeeecceEEeehhHHHHhhhhccCCcchHHHHHHHHHHhhhhHhhhh-hhh
Confidence 9999999999999999999999999999999999999998 333 221 24677889999999999999986 344
Q ss_pred HHHHHhhhccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1203 LVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1203 ~~G~~vL~fs~---~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
.+.|+++.--. .++|.-.-+ .....++.+++.+++|.|++..|+-..
T Consensus 449 ~vvf~PIFtL~GvEGklF~Pma~-t~~~al~~a~llsiT~iPal~~~~i~~ 498 (1027)
T COG3696 449 TVVFLPIFTLTGVEGKLFAPLAF-TKTYALLAALLLSITFIPALMAYLIRG 498 (1027)
T ss_pred eeehhhhheeccccccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 56666654443 334443322 223457788899999999999998543
No 62
>TIGR00917 2A060601 Niemann-Pick C type protein family. The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.
Probab=99.27 E-value=1.4e-09 Score=144.97 Aligned_cols=149 Identities=19% Similarity=0.245 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHHHHhC-CCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccc
Q 000819 634 ITIVISYLVMFAYISLTLG-DTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1268)
Q Consensus 634 ~~~~is~llm~~yv~~~l~-~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd 712 (1268)
..++++.++|++...+.++ +. ..++..++.+.++++..+|+|.++|++++. ++.+.-.+.+|++||
T Consensus 1052 ~~l~~a~~~v~~V~~l~l~l~~------------~~aliv~l~I~~i~~~~~g~M~~~gisLN~-vSlv~Li~avGisV~ 1118 (1204)
T TIGR00917 1052 INLGISLGAIFIVTLVLLGLNA------------LSAVNVVISVGMIVVNLVGIMHLWNISLNA-VSVVNLVMAKGISIE 1118 (1204)
T ss_pred HHHHHHHHHHHHHHHHHhcccc------------hhHHHHHHHHHHHHHHHHHHHHHhCCCHhH-HHHHHHHHHhhhHHH
Confidence 3466777777777666653 32 236777788899999999999999999998 566767788899999
Q ss_pred ceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHH-HHHHHHHHHhhcccCchHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000819 713 NMCILVHAVKRQQLELPLETRISNALVEVGPSITLA-SLSEVLAFAVGSFIPMPACRVFSMFAALAV-LLDFLLQITAFV 790 (1268)
Q Consensus 713 ~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~t-slt~~~~F~~~~~s~~p~vr~F~i~aa~~v-~~~~l~~lt~fp 790 (1268)
..-|+.++|.+.. ..++.+|+.+|++++|.|++.. ++|+++||+.+++++...++.|=.-+-+++ ++.++=-+.|+|
T Consensus 1119 f~~hI~~~f~~~~-~~~~~~ra~~al~~vg~~v~~g~tlT~~~g~~~L~f~~s~if~vfff~m~l~iv~~g~~HGLvfLP 1197 (1204)
T TIGR00917 1119 FCSHINAQFSTSK-HFSRNHRAKEALGGMGSSVFSGITLTKLVGVVVLGFSKSEIFQVYYFRMYLAIVLLGALHGLVFLP 1197 (1204)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999997642 4578899999999999999988 689999999999999999998866666644 778888999999
Q ss_pred HHHHHh
Q 000819 791 ALIVFD 796 (1268)
Q Consensus 791 alL~l~ 796 (1268)
.+|++.
T Consensus 1198 VlLS~~ 1203 (1204)
T TIGR00917 1198 VLLSYI 1203 (1204)
T ss_pred HHHHhc
Confidence 999874
No 63
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=99.23 E-value=1.6e-10 Score=139.84 Aligned_cols=151 Identities=15% Similarity=0.193 Sum_probs=132.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccc
Q 000819 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1268)
Q Consensus 633 ~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd 712 (1268)
+..++++++++++|+.+.+++ .|+..++.+.++++.++|++.++|.++|+ ....--.+++|++||
T Consensus 336 ~~A~lig~ilV~i~m~~~yr~--------------~glia~iaL~~~v~~~l~~~~l~g~~l~l-~siaGlil~iG~~VD 400 (498)
T PRK05812 336 LIAGLIGLALVLLFMILYYRL--------------FGLIANIALVANLVLILAVLSLLGATLTL-PGIAGIVLTIGMAVD 400 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHhh--------------hHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHhheeEEe
Confidence 334677888888888876653 37888899999999999999999999997 555555678899999
Q ss_pred ceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1268)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpa 791 (1268)
+.+++.++++++ +.+.++.+++.++.++++.+|+.|++|++++|+.+.+.....+|.|++...+|++++++..+++.|+
T Consensus 401 ~~IVI~ErIreel~~g~~~~~Ai~~~~~~~~~~Il~s~lTTlia~l~L~~~g~g~i~~fAitl~iGii~s~~~sl~vtp~ 480 (498)
T PRK05812 401 ANVLIFERIREELREGRSLRSAIEAGFKRAFSTILDSNITTLIAAIILYALGTGPVKGFAVTLGIGILTSMFTAITVTRA 480 (498)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999975 5778999999999999999999999999999999888776789999999999999999999999999
Q ss_pred HHHHhhh
Q 000819 792 LIVFDFL 798 (1268)
Q Consensus 792 lL~l~~r 798 (1268)
++.+..+
T Consensus 481 l~~~~~~ 487 (498)
T PRK05812 481 LVNLLYG 487 (498)
T ss_pred HHHHHHh
Confidence 9986543
No 64
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=99.20 E-value=5.4e-10 Score=142.37 Aligned_cols=153 Identities=12% Similarity=0.207 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc
Q 000819 1096 ALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS 1175 (1268)
Q Consensus 1096 ~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~ 1175 (1268)
....++++++++++.+++.++ ..+++..+++++.++.++|+|.++|++||..++..+++++|++||.+|.+..+.+++
T Consensus 911 gilA~lIglaLVlIFMlL~YR--f~GliA~IALll~VlltLg~LsLlGitLTLpgIAGIILlIGmAVDdnIVIfERIREE 988 (1403)
T PRK12911 911 GIISVCLGLAVLIVLMSVYYR--FGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREE 988 (1403)
T ss_pred hHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhcCCEEEehHHHHH
Confidence 333444444444444443332 125666666777777888999999999999999999999999999999999777665
Q ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCc
Q 000819 1176 ---SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSR 1252 (1268)
Q Consensus 1176 ---~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~ 1252 (1268)
+++..+++.++.++..++++.+. +||++|+++|.+..+..++-|- .++++.+++|++.++++.|+++.++..+.+
T Consensus 989 Lr~Gksl~eAI~~G~~~afs~ILdTn-LTTLIA~lPLf~fGtG~vkgFA-vTLiIGII~SmftALfVtP~Ll~l~l~~~~ 1066 (1403)
T PRK12911 989 YLLSRSLSESVEAGYKKAFSAIFDSN-LTTILASALLLMLDTGPIKGFA-LTLIIGIFSSMFTALFMTKFFFMIWMNKTQ 1066 (1403)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 35788999999999999999987 6999999999666666677773 445567889999999999999998865443
No 65
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=99.18 E-value=9.5e-10 Score=123.03 Aligned_cols=140 Identities=14% Similarity=0.257 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhccccc
Q 000819 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDN 713 (1268)
Q Consensus 634 ~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~ 713 (1268)
..++++.+++++|+.+.++ + ..++..++.+.++++.++|++.++|+++|. .+.+-..+++|+.+||
T Consensus 102 ~~~~la~i~i~l~l~~~f~-~------------r~~l~v~~~ip~~l~~~~~~l~~~g~~ln~-~sl~gli~~iGi~Vdd 167 (246)
T TIGR00966 102 LALLAALVLILIYITVRFE-W------------RFALGAIVALVHDVIITVGVYSLFGIEVNL-TTVAALLTIIGYSIND 167 (246)
T ss_pred HHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCcccH-HHHHHHHHHHHHhccC
Confidence 3466677777777766543 2 247888899999999999999999999997 5666667889999999
Q ss_pred eehHHHHHHHh-c--CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHH
Q 000819 714 MCILVHAVKRQ-Q--LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQIT 787 (1268)
Q Consensus 714 ~~~l~~~~~~~-~--~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt 787 (1268)
++++++++++. + ++.+..+++.++.++..++++.|++|++++|+.+.+.+-+.+|.|++...+|++++.+.++.
T Consensus 168 ~Ivv~d~i~e~~~~~~~~~~~~a~~~a~~~~~~~ii~ttltti~~flpl~~~~g~~~~~~a~~~~~Gli~~t~~sl~ 244 (246)
T TIGR00966 168 TVVVFDRIRENLRKYTRKTFTEVINLSINQTLSRTINTSLTTLLAVLALYVFGGGVIKDFSLALLVGVIVGTYSSIF 244 (246)
T ss_pred eEEEehHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999875 2 37889999999999999999999999999999998888899999999999999999887764
No 66
>TIGR01129 secD protein-export membrane protein SecD. SecD from Mycobacterium tuberculosis has a long Pro-rich insert.
Probab=99.17 E-value=4.1e-10 Score=133.62 Aligned_cols=146 Identities=14% Similarity=0.217 Sum_probs=127.5
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccc
Q 000819 633 AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVD 712 (1268)
Q Consensus 633 ~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd 712 (1268)
+..++++++++++|+.+.+++ .|+..++.+.+.++.++|+|+++|.++++ ...+--.+++|++||
T Consensus 251 ~~a~~ig~ilV~l~~~~~yr~--------------~gl~a~ial~~~v~~~l~~~~l~g~~l~l-~siaglil~iG~~VD 315 (397)
T TIGR01129 251 IKAGLIGLVLVLVFMILYYRL--------------FGLIAAIALVINIVLILAILSAFGATLTL-PGIAGLILTIGMAVD 315 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHHHHHHHHHHHHHHHHCCCccH-HHHHHHHHHhheeee
Confidence 345678888888888887653 37788888999999999999999999997 455555678899999
Q ss_pred ceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1268)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpa 791 (1268)
|.++++++++++ +++.++.+++.++.++++.+++.+++|++++|+.+.+...+.+|.|++...+|++++++..+++...
T Consensus 316 ~~Ivi~erire~l~~g~~~~~Ai~~~~~~~~~~I~~s~lTtlia~l~L~~~g~g~~~~fA~tl~igii~s~~~sl~vtr~ 395 (397)
T TIGR01129 316 ANVLIYERIKEELRLGKSVRQAIEAGFERAFSTIFDANITTLIAALILYVFGTGPVKGFAVTLAIGIIASLFTALVFTRL 395 (397)
T ss_pred ceEEEeHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999986 5678899999999999999999999999999999888777789999999999999999999998776
Q ss_pred HH
Q 000819 792 LI 793 (1268)
Q Consensus 792 lL 793 (1268)
++
T Consensus 396 ~~ 397 (397)
T TIGR01129 396 LL 397 (397)
T ss_pred hC
Confidence 53
No 67
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.16 E-value=1.9e-09 Score=122.46 Aligned_cols=159 Identities=11% Similarity=0.069 Sum_probs=135.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
..+.+..+..+++|+++|++.+.+.++ ++.++.++++++..++.++|++.++|+++|..+++.+++.+|++|+++|.+.
T Consensus 122 ~~~~~~~~~a~~~ali~I~lyl~~rF~-~~~~l~al~al~~dv~~~l~~l~l~g~~l~~~~iaglLtliG~svnd~IVi~ 200 (297)
T PRK13021 122 QELAEQGGLALLVAMLCILGYLSYRFE-WRLASGALFALVHDVIFVLAFFALTQMEFNLTVLAAVLAILGYSLNDSIIIA 200 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCCEEEe
Confidence 446677788888999999988888887 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1170 ~~f~~~~-----~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
.++++.. .+..+++.+|.++.-++++.++ +|+++|+++|++......+.|- ..++..+++|.+.++++-+.++
T Consensus 201 drire~~~~~~~~~~~e~i~~ai~~~lrr~l~Ts-lTt~l~llpL~l~G~~~~~~fA-~~li~Gli~gt~sslfva~pl~ 278 (297)
T PRK13021 201 DRIRELLIAKPKLAIQEINNQAIVATFSRTMVTS-GTTLMTVGALWIMGGGPLEGFS-IAMFIGILTGTFSSISVGTSLP 278 (297)
T ss_pred eHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 8887542 3678999999999999999886 6999999999998777888774 3334567888889999988777
Q ss_pred hhhCCCC
Q 000819 1245 SVFGPPS 1251 (1268)
Q Consensus 1245 s~~gp~~ 1251 (1268)
-+++.+.
T Consensus 279 ~~~~~~~ 285 (297)
T PRK13021 279 ELLGLSP 285 (297)
T ss_pred HHHccCh
Confidence 7775433
No 68
>PRK08578 preprotein translocase subunit SecF; Reviewed
Probab=99.16 E-value=1.6e-09 Score=123.78 Aligned_cols=161 Identities=11% Similarity=0.181 Sum_probs=128.3
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhh
Q 000819 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1268)
Q Consensus 619 ~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~ 698 (1268)
.++.+|..+. -...++++.++|++|+.+.+++ +..++..++.+...++.++|++.++|++++..
T Consensus 126 p~~g~~~~~~---~~~al~~alilI~i~l~l~F~s------------~~~~l~~~lal~~dv~~tlg~~~l~g~~ln~~- 189 (292)
T PRK08578 126 PTFGSQFQEQ---ALKAVGFAFIGMAVVVFLIFRT------------PVPSLAVILSAFSDIIIALALMNLFGIELSLA- 189 (292)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHCccccHH-
Confidence 4455555542 2335778888999998887654 24577888888999999999999999999974
Q ss_pred hhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhccc----CchHHHHHHHHH
Q 000819 699 MEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFI----PMPACRVFSMFA 774 (1268)
Q Consensus 699 ~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s----~~p~vr~F~i~a 774 (1268)
+.+.-.+++|+++||++++.+++++.. .+.++++.+++++. +.+++|++++|+.+.+. ..+.+|.|++..
T Consensus 190 ~i~gll~iiG~sVdd~IVv~dri~~~~--~~~~eai~~a~~~~----i~tslTTl~~~lpL~l~~~~~g~~~~~~fal~l 263 (292)
T PRK08578 190 TVAALLMLIGYSVDSDILLTTRVLKRR--GTFDESIKRAMRTG----ITMTLTTIAAMAVLYIVSTIPQAEVLANIAAVL 263 (292)
T ss_pred HHHHHHHHHheeecCcEEEehHHHHcc--CCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 333334679999999999999998653 57889999988542 35679999999987643 578999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccc
Q 000819 775 ALAVLLDFLLQITAFVALIVFDFLRAE 801 (1268)
Q Consensus 775 a~~v~~~~l~~lt~fpalL~l~~rr~~ 801 (1268)
.+|++++++.++.+-++++.+..+|+.
T Consensus 264 ~~Gli~s~~~tl~~~~~~l~~~~~~~~ 290 (292)
T PRK08578 264 IFGLLADLMNTWLLNAGILRWYKTEGK 290 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999998776653
No 69
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.14 E-value=1.1e-09 Score=117.14 Aligned_cols=163 Identities=17% Similarity=0.215 Sum_probs=130.5
Q ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceee
Q 000819 1083 YMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAV 1162 (1268)
Q Consensus 1083 ~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~V 1162 (1268)
.+-...=....+..+..+++++++|++.+++.++ ++.++..+++++.-++.++|+|.++|+++|..++..+++.+|++|
T Consensus 20 ~Vgp~~g~~~~~~~~~a~~~al~~i~iyi~~rf~-~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG~sV 98 (189)
T PF02355_consen 20 TVGPTLGSDLLKSALIALIIALIAILIYIFLRFR-WRFALAAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIGYSV 98 (189)
T ss_dssp EE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHHHHH
T ss_pred EEChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHHHHH
Confidence 3433444567778888889999998888888776 567777778888888889999999999999999999999999999
Q ss_pred cceeeeehhhhcc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHH
Q 000819 1163 EFCVHITHAFSVS-----SGDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 1237 (1268)
Q Consensus 1163 DfsiHi~~~f~~~-----~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~L 1237 (1268)
|+.|.+..|.+++ +++.++++.+++++..+..+.+. +|+++.+++|.+......+.|-.. ++..+++|.+.++
T Consensus 99 d~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~-~ttll~~~~L~~~g~~~l~~Fa~~-l~iGvi~~~~ss~ 176 (189)
T PF02355_consen 99 DDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTS-LTTLLAALILFFFGGGSLKGFALT-LIIGVIIGTYSSL 176 (189)
T ss_dssp HHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHC--CHHHHHHHH-HHHHHHHHHHHHH
T ss_pred hcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccchHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999888766 34678999999999999777665 588888888888888888888544 4467889999999
Q ss_pred HHHHHHHhhhC
Q 000819 1238 VFLPVVLSVFG 1248 (1268)
Q Consensus 1238 i~LPvlLs~~g 1248 (1268)
++-+.++.++.
T Consensus 177 ~ia~~l~~~l~ 187 (189)
T PF02355_consen 177 FIARPLLYWLV 187 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988763
No 70
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=99.12 E-value=3.3e-09 Score=126.12 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhcccCCceeeeccceeehhHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 000819 1057 SMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLD-----IWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMI 1131 (1268)
Q Consensus 1057 ~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~-----i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~ 1131 (1268)
..+++++++..++.. ..|.+......++... ..+..+...++++++|++++++.++.+..++.+.+++++.
T Consensus 223 ~~~eA~~La~~L~~G----aLP~~~~i~~~~~v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~~~i~~iaL~~~~~ 298 (417)
T PRK08343 223 AKEEAKELYIHLRSG----ALPVKLDIEGSGSVSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREPRIALPMVITSLSE 298 (417)
T ss_pred CHHHHHHHHHHHhcc----ccCCCeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777641 1222222222222222 2234445666777777777777777766666555556667
Q ss_pred HHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1132 VVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS-GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLC 1210 (1268)
Q Consensus 1132 ~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~-~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~ 1210 (1268)
++.++|+|.++|++||..++..+++++|++||..|.+..+.+++. .++++++..++++..++++.+. +||++|+++|+
T Consensus 299 v~~~lg~l~l~g~tLtl~~IaGlIl~iGmaVD~~IvI~e~i~~~~~~~~~~ai~~g~~~a~~~Il~t~-lTTiia~lpL~ 377 (417)
T PRK08343 299 VIIILGFAALIGWQLDLASIAGIIAVIGTGVDDLIIITDEVLHEGKVPSRKVFLSRIKRAFFIIFAAA-ATTIAAMSPLA 377 (417)
T ss_pred HHHHHHHHHHHCCCccHHHHHHHHHHHHHeeeCcEEEhHHHHHhCCccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 788899999999999999999999999999999999996555443 3678889999999999999886 69999999999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1211 FSRTEVFVVYYFQMYLALVLLGFLHGLVFLPV 1242 (1268)
Q Consensus 1211 fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPv 1242 (1268)
+.....++-| ..++++|++.+.++.-.
T Consensus 378 ~~g~g~ikgf-----AitliiGii~s~~iTrp 404 (417)
T PRK08343 378 VMGLGDLKGF-----AITTILGVLIGVLITRP 404 (417)
T ss_pred Hhccccccch-----HHHHHHHHHHHHHHHHH
Confidence 8865555555 23344555555555433
No 71
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=99.05 E-value=2.5e-09 Score=130.02 Aligned_cols=151 Identities=18% Similarity=0.199 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhh-ccccchhhhhHHHHHhhhcccc
Q 000819 634 ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAI-GVKSTLIIMEVIPFLVLAVGVD 712 (1268)
Q Consensus 634 ~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~-Gi~~~~i~~~v~pflvl~iGvd 712 (1268)
..++++++++++|+.+.+++ .|+...+.+.+.++.++|+|+++ |.++|+ +...--.+.+|+.||
T Consensus 444 ~A~iig~vlV~lFm~~~Yr~--------------~glva~iAL~~~l~l~l~vmsll~G~tLtL-pgIAGiILtIGmaVD 508 (604)
T PRK12933 444 AALALGMGITLLFMALWYRR--------------LGWVANVALIANMVCLFGLLALIPGAVLTL-PGIAGLVLTVGMAVD 508 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHhCCcccH-HHHHHHHHHHHhhcc
Confidence 34566777777777654443 27778888899999999999998 999997 444444577899999
Q ss_pred ceehHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 713 NMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVA 791 (1268)
Q Consensus 713 ~~~~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpa 791 (1268)
+.+++..+.+++ +.+.++.+++....+++..+|+.+++||+++|+.+.+..-.++|.|++...+|++.+++..+++-|+
T Consensus 509 anIVI~ERIrEel~~G~s~~~Ai~~G~~~a~~~IldanlTTlia~lpL~~~Ggg~ikgFAvTL~iGIl~S~ftAi~vtr~ 588 (604)
T PRK12933 509 TNVLIFERIKDKLKEGRSFAQAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRA 588 (604)
T ss_pred CcEEEehHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999886 5678899999999999999999999999999999887776789999999999999999999999999
Q ss_pred HHHHhhhc
Q 000819 792 LIVFDFLR 799 (1268)
Q Consensus 792 lL~l~~rr 799 (1268)
++.+..++
T Consensus 589 l~~~~~~~ 596 (604)
T PRK12933 589 LINLVYGR 596 (604)
T ss_pred HHHHHhcc
Confidence 98865443
No 72
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=99.04 E-value=1.3e-08 Score=108.91 Aligned_cols=163 Identities=17% Similarity=0.271 Sum_probs=132.1
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhh
Q 000819 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1268)
Q Consensus 619 ~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~ 698 (1268)
.++.+|+.+. -+..+.++++++++|+.+-++ ...++..++..+..++.++|+++++|+++++ .
T Consensus 23 p~~g~~~~~~---~~~a~~~al~~i~iyi~~rf~-------------~~~~~~aii~l~~dv~i~l~~~~~~~~~l~l-~ 85 (189)
T PF02355_consen 23 PTLGSDLLKS---ALIALIIALIAILIYIFLRFR-------------WRFALAAIIALIHDVLITLGIFSLFGIELTL-P 85 (189)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHHHHHHHHHHHT-EE-H-H
T ss_pred hhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHHHHHHHHHHHHCCcccH-H
Confidence 4555555543 344567788888888877543 2247788888888899999999999999997 4
Q ss_pred hhHHHHHhhhccccceehHHHHHHHh---cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000819 699 MEVIPFLVLAVGVDNMCILVHAVKRQ---QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1268)
Q Consensus 699 ~~v~pflvl~iGvd~~~~l~~~~~~~---~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 775 (1268)
....-.+++|.++||.+.+.+|.+++ .++.+.++++.++++++...++.|++|+.++.+.+.+..-..+|.|++...
T Consensus 86 ~iaall~~iG~sVd~~IVifdRIre~~~~~~~~~~~~~~~~s~~~tl~r~i~t~~ttll~~~~L~~~g~~~l~~Fa~~l~ 165 (189)
T PF02355_consen 86 SIAALLTIIGYSVDDNIVIFDRIREELRASRGKSLREAINISIKQTLSRTIDTSLTTLLAALILFFFGGGSLKGFALTLI 165 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-STS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcceeehHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 55555688999999999999999987 257889999999999999999999999999999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 000819 776 LAVLLDFLLQITAFVALIVFDFL 798 (1268)
Q Consensus 776 ~~v~~~~l~~lt~fpalL~l~~r 798 (1268)
+|++.+.+.++.+-++++.+..|
T Consensus 166 iGvi~~~~ss~~ia~~l~~~l~~ 188 (189)
T PF02355_consen 166 IGVIIGTYSSLFIARPLLYWLVK 188 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999887654
No 73
>PRK13021 secF preprotein translocase subunit SecF; Reviewed
Probab=99.00 E-value=2e-08 Score=114.29 Aligned_cols=163 Identities=13% Similarity=0.188 Sum_probs=138.1
Q ss_pred chhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchh
Q 000819 618 ESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLI 697 (1268)
Q Consensus 618 ~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i 697 (1268)
+.++.+|+.+. -...+.++.++|++|+.+-++ + ..++..++.+...++.++|++.++|.+++.
T Consensus 117 gp~~g~~~~~~---~~~a~~~ali~I~lyl~~rF~-~------------~~~l~al~al~~dv~~~l~~l~l~g~~l~~- 179 (297)
T PRK13021 117 GPQVGQELAEQ---GGLALLVAMLCILGYLSYRFE-W------------RLASGALFALVHDVIFVLAFFALTQMEFNL- 179 (297)
T ss_pred CHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHHHCCCccH-
Confidence 45677777764 345577888899999877653 3 347778889999999999999999999996
Q ss_pred hhhHHHHHhhhccccceehHHHHHHHhc---CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 000819 698 IMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (1268)
Q Consensus 698 ~~~v~pflvl~iGvd~~~~l~~~~~~~~---~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~a 774 (1268)
...+--..++|+.++|++.+++++++.. ++.+.++++.+++.+.-.++++|++|++++.+.+.+..-+.+|.|++..
T Consensus 180 ~~iaglLtliG~svnd~IVi~drire~~~~~~~~~~~e~i~~ai~~~lrr~l~TslTt~l~llpL~l~G~~~~~~fA~~l 259 (297)
T PRK13021 180 TVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGALWIMGGGPLEGFSIAM 259 (297)
T ss_pred HHHHHHHHHHHHeeeCCEEEeeHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 4555556789999999999999999753 5678999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 000819 775 ALAVLLDFLLQITAFVALIVFDF 797 (1268)
Q Consensus 775 a~~v~~~~l~~lt~fpalL~l~~ 797 (1268)
.+|+++..+.++.+-++++....
T Consensus 260 i~Gli~gt~sslfva~pl~~~~~ 282 (297)
T PRK13021 260 FIGILTGTFSSISVGTSLPELLG 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999888877654
No 74
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=98.97 E-value=6.7e-11 Score=147.14 Aligned_cols=181 Identities=18% Similarity=0.256 Sum_probs=143.0
Q ss_pred CCCeEEEEccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 608 ~~~l~v~f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~ 687 (1268)
.+.+++.+..----.+++++....|.....++-..|+..+.+.. +.++..+.+++.+.+++..++++.
T Consensus 303 ~~kv~~~~~~~~~~~~~~~~~~l~ds~la~l~~~~v~~~v~i~t------------~s~f~tf~~~~~i~ls~~~a~f~y 370 (999)
T KOG3664|consen 303 NEKVRVVGIDLDLKNELFNELILTDSLLASLSALLVMASVWIYT------------GSAFITFMSIVAICLSLGVALFFY 370 (999)
T ss_pred ccceeeeehhhhhHHHHHHHHhccchHHHHhccccceeEEEEec------------CcHHHHHHHHHHHHHHhhHHHhhh
Confidence 34566666665555778888888888876665554444332211 245678899999999999999888
Q ss_pred Hh-hccccchhhhhHHHHHhhhccccceehHHHHHHHhc-------------------CCCCHHHHHHHHHHhhhhHHHH
Q 000819 688 SA-IGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-------------------LELPLETRISNALVEVGPSITL 747 (1268)
Q Consensus 688 ~~-~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~-------------------~~~~~~~~i~~al~~~g~si~~ 747 (1268)
.. +|+.+-.++..+.-++++|||.||.|.+...|+|.. .....+......+.+...+|++
T Consensus 371 ~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~~~~l~~~~~ll~~~~~l~~~h~~~smfv 450 (999)
T KOG3664|consen 371 AVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASFFLELSDHTELLENVFALTLRHASFSMFV 450 (999)
T ss_pred eeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhcccccccccchhHHHHHHhhhhhhhhHHHHH
Confidence 75 678877777788888999999999999999994410 0123556677788899999999
Q ss_pred HHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000819 748 ASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 748 tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~l~~rr~ 800 (1268)
|+++++.+|++...++.+.+|.|+++|+..+.+++..+++++||..++..++.
T Consensus 451 t~~~t~~~f~~~~ssp~~~lrcfg~~A~~~v~~n~~~~v~~lPa~~SI~~~~~ 503 (999)
T KOG3664|consen 451 TSLTTACAFYANYSSPVIVLRCFGIFAGLTVVFNYLLVVLWLPASVSIALRLF 503 (999)
T ss_pred HHHHHHhhhhhccccchHHHHHhccccccccccccceeEEeccchhhhhhccc
Confidence 99999999999999999999999999999999999999999999877766543
No 75
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.76 E-value=4.6e-07 Score=102.99 Aligned_cols=168 Identities=14% Similarity=0.257 Sum_probs=139.0
Q ss_pred hhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhh
Q 000819 619 SSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLII 698 (1268)
Q Consensus 619 ~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~ 698 (1268)
..+.+|+.+. -+.-++++++.|++|+.+-+ ++..++.+++..+-=++.++|+++++|+++++ .
T Consensus 126 p~vg~eL~~~---~~~Al~~alv~I~iYV~~RF-------------e~~~a~aaI~al~hDvii~~g~~slfgiE~~l-~ 188 (305)
T COG0341 126 PTVGKELARQ---GLLALLLALVGILIYVFFRF-------------EWRFALAAILALLHDVIITLGFFSLFGIEFNL-A 188 (305)
T ss_pred cchHHHHHHH---HHHHHHHHHHHHHHhhheee-------------ehHHHHHHHHHHHHHHHHHHHHHHHhheeecH-H
Confidence 5677888875 35567788889999986532 23348999999999999999999999999997 4
Q ss_pred hhHHHHHhhhccccceehHHHHHHHhc---CCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHH
Q 000819 699 MEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAA 775 (1268)
Q Consensus 699 ~~v~pflvl~iGvd~~~~l~~~~~~~~---~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa 775 (1268)
+...-..++|-.+||++.+.+|.||.. +..+..+.+..++.++-.-...|++|+.++.+++.+..=+.+++|++..-
T Consensus 189 ~IAAlLtiIGYSvNDtIVvfDRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts~ttll~~~~l~~fgg~~l~~fa~~ll 268 (305)
T COG0341 189 TIAALLTIIGYSVNDTIVVFDRIRENLRKYRRETLREIINTSINQTLTRTINTSVTTLLVVVALLLFGGGSLKDFALALL 268 (305)
T ss_pred HHHHHHHHeeeccCCeEEEEhHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 445555678999999999999999853 45677788888888888888899999999987777666699999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccc
Q 000819 776 LAVLLDFLLQITAFVALIVFDFLRAEDK 803 (1268)
Q Consensus 776 ~~v~~~~l~~lt~fpalL~l~~rr~~~~ 803 (1268)
+|++.+..-++.+-++++.+..+|++..
T Consensus 269 vGii~gtySSifiA~pll~~~~~~~~~~ 296 (305)
T COG0341 269 VGIIAGTYSSIFIAAPLLLLLGKRREKK 296 (305)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhHhhc
Confidence 9999999999999999999887766543
No 76
>COG2409 Predicted drug exporters of the RND superfamily [General function prediction only]
Probab=98.74 E-value=8.5e-08 Score=126.12 Aligned_cols=197 Identities=17% Similarity=0.211 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHhhcccCCceeeeccceeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 000819 1056 NSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDL 1135 (1268)
Q Consensus 1056 ~~~~~~~~i~~~~~~~~~~~v~~~~~~~v~~eq~~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~ 1135 (1268)
+..+..|++.++...+.+++.+..|....-.++......+......+++.++++++++.+||+.+++++++++.+.+...
T Consensus 146 es~~~v~~~v~~~~~~~~~~~~~tG~~~~~~d~~~~~~~~~~~~e~i~~~~i~v~Llivf~s~i~a~lpL~t~~~s~~~a 225 (937)
T COG2409 146 ESVEAVRSIVRQLPAPDGLTAYVTGPAATSADLTAAGARDLKVIEAITLVLILVVLLIVYRSVITAFLPLITVGLSLLVA 225 (937)
T ss_pred HHHHHHHHHhcccCCCCceEEEEechHhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666766664445778888888887777777777777788889999999999999999999999999888877776
Q ss_pred HHHHHHhc----cccchH-HHHHHHHhhceeecceeeeehhhhccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1136 MGVMAILK----IQLNAV-SVVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASVFSGITLTKLVGVI 1207 (1268)
Q Consensus 1136 ~G~M~l~g----i~LN~v-S~v~l~iaiGi~VDfsiHi~~~f~~~~---~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~ 1207 (1268)
.|+..++. ..++.. ..+...+.+|+++||++-+.-||+++. .++.+++..+++..|..|+.++ .|.++++.
T Consensus 226 ~~iv~~l~~~~~~~~stf~~~~~~~~~ig~gtDY~Lflv~R~~e~~~~g~~~~~a~~~a~~tag~~V~~sg-~tV~~a~~ 304 (937)
T COG2409 226 QGIVALLAYAFGLGVSTFALSLLVALGIGAGTDYALFLVSRYREELREGQDREAAVGTAYRTAGKTVAFSG-LTVAIALL 304 (937)
T ss_pred HHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHhccceeehhh-hHHHHHHH
Confidence 66665333 334333 334567889999999999999999653 4899999999999999999887 58899999
Q ss_pred hhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCccc
Q 000819 1208 VLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRCM 1254 (1268)
Q Consensus 1208 vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~~ 1254 (1268)
.|.|++.++++.. .......+.++.+.++.++|++++++|++....
T Consensus 305 ~l~~a~~~~~~s~-g~~~ai~V~va~l~slTllPAll~llg~~~~~~ 350 (937)
T COG2409 305 GLSFARLPFLKTL-GIAAAIGVAVAVLAALTLLPALLALLGRRGFWP 350 (937)
T ss_pred HHHhcccchhhhc-hhhHHHHHHHHHHHHHHHHHHHHHHhcccCCcC
Confidence 9999999999987 234445677889999999999999999988444
No 77
>PF12349 Sterol-sensing: Sterol-sensing domain of SREBP cleavage-activation
Probab=98.73 E-value=1e-07 Score=98.89 Aligned_cols=129 Identities=22% Similarity=0.397 Sum_probs=109.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHH-HHHHHhhceeecceeeeehhhhccCC--CHHHHHHHHHHHHHHH
Q 000819 1117 SFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSV-VNLVMAVGIAVEFCVHITHAFSVSSG--DKNQRMKEALGTMGAS 1193 (1268)
Q Consensus 1117 s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~-v~l~iaiGi~VDfsiHi~~~f~~~~~--~~~~r~~~al~~~g~~ 1193 (1268)
.++.++..++.+.++++..+|+.+++|++++.+.. +...+.+|+++|+..|+++++.+... +.++|+.+|+++.|++
T Consensus 5 ~~~L~~~~i~~v~~s~~~a~~i~~~~g~~~~~~~~e~~PFlvl~iG~dn~f~l~~~~~~~~~~~~~~~ri~~al~~~G~s 84 (153)
T PF12349_consen 5 RFWLGLAGIVSVAFSVLFALGICSLFGVPFSLIPSEVLPFLVLGIGVDNMFVLARAVRRTPSSLPVPERIAEALSRVGPS 84 (153)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHhhhHHHHHHHHHHHhcccccHHHHHHHHHHHHhHH
Confidence 35667777788888888899999999999999886 66678889999999999999987653 5689999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 1194 VFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVF 1247 (1268)
Q Consensus 1194 V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~ 1247 (1268)
++... +|.++++...++++.+..+.| .......+++.++..+.+.|++|++-
T Consensus 85 i~~t~-l~~~~af~~~~~~~~~~l~~F-c~faa~~l~~d~~l~~tff~avLsld 136 (153)
T PF12349_consen 85 ILLTS-LTEIVAFLIGAFSPVPALREF-CLFAALALLFDFLLQLTFFPAVLSLD 136 (153)
T ss_pred HHHHH-HHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 699999998889998888887 23333457888999999999999985
No 78
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.61 E-value=1.3e-06 Score=106.25 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=130.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhh
Q 000819 1093 WRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAF 1172 (1268)
Q Consensus 1093 ~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f 1172 (1268)
.+..+...++++++|++++++..| ..+++..+++..-++.++|+|.++|..|+...+..++++||++||-=+.|..|-
T Consensus 342 i~~gi~Agl~g~~~V~vfm~~~Yr--~~Gvia~ial~~n~~lil~vls~lgatLtLpgIAGiILtIGmaVDaNVlI~ERI 419 (506)
T COG0342 342 IKAGLIAGLIGLALVAVFMLLYYR--LAGVIAAIALGLNGVLILAVLSLLGATLTLPGIAGIILTIGMAVDANVLIFERI 419 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHhhhhcccccEEeeHHH
Confidence 345666677888888888887777 457777777777888899999999999999999999999999999999999888
Q ss_pred hccC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q 000819 1173 SVSS---GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGP 1249 (1268)
Q Consensus 1173 ~~~~---~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp 1249 (1268)
+++. ++...++..+.++..+.|+-+- +||+++.++|.+-....++-|- .++++.++++++.++++-=.++.++-+
T Consensus 420 rEElr~G~s~~~ai~~G~~rAf~tI~DsN-~TTlia~~~L~~~GtG~vKGFA-~Tl~lGi~~smfta~~~tr~l~~~~~~ 497 (506)
T COG0342 420 REELRNGKSVLSAIDAGFKRAFSTILDSN-ATTLIAAAILFALGTGPVKGFA-VTLILGILTSMFTAIPVTRLLLNLLVG 497 (506)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhccCCchHHH-HHHHHHHHHHhhhhHHHHHHHHHHHhc
Confidence 8764 4677888999999999999987 5999999898888888889884 445567889999999998888888765
Q ss_pred CCc
Q 000819 1250 PSR 1252 (1268)
Q Consensus 1250 ~~~ 1252 (1268)
..+
T Consensus 498 ~~~ 500 (506)
T COG0342 498 RRR 500 (506)
T ss_pred ccc
Confidence 444
No 79
>COG0341 SecF Preprotein translocase subunit SecF [Intracellular trafficking and secretion]
Probab=98.58 E-value=1.5e-06 Score=98.85 Aligned_cols=162 Identities=13% Similarity=0.225 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeee
Q 000819 1090 LDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1090 ~~i~~~~~~~l~~al~~v~vv~~ll~~s~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
..+.+..+..+++|++.|++...+-| .|+.++-++++..-=++.++|+|.++||++|..++..+.+.+|.||+++|.+.
T Consensus 130 ~eL~~~~~~Al~~alv~I~iYV~~RF-e~~~a~aaI~al~hDvii~~g~~slfgiE~~l~~IAAlLtiIGYSvNDtIVvf 208 (305)
T COG0341 130 KELARQGLLALLLALVGILIYVFFRF-EWRFALAAILALLHDVIITLGFFSLFGIEFNLATIAALLTIIGYSVNDTIVVF 208 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhheee-ehHHHHHHHHHHHHHHHHHHHHHHHhheeecHHHHHHHHHHeeeccCCeEEEE
Confidence 34556677777778777777766666 45558878888888888899999999999999999999999999999999999
Q ss_pred hhhhccC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 1170 HAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVL 1244 (1268)
Q Consensus 1170 ~~f~~~~-----~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlL 1244 (1268)
-|-++.. .+..+.+..++.++-.-.+..+ +||++.+++|.+-....++.|-..| ++.+++|...+.++-+.+|
T Consensus 209 DRIREn~r~~~~~~~~~iin~si~qTlsRti~Ts-~ttll~~~~l~~fgg~~l~~fa~~l-lvGii~gtySSifiA~pll 286 (305)
T COG0341 209 DRIRENLRKYRRETLREIINTSINQTLTRTINTS-VTTLLVVVALLLFGGGSLKDFALAL-LVGIIAGTYSSIFIAAPLL 286 (305)
T ss_pred hHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCchHHHHHHHHH-HHHHHHHHHhHHHHHHHHH
Confidence 7666643 2455888888888777666555 4777777777766667788774333 3567788889999999999
Q ss_pred hhhCCCCccc
Q 000819 1245 SVFGPPSRCM 1254 (1268)
Q Consensus 1245 s~~gp~~~~~ 1254 (1268)
.+++.+.+..
T Consensus 287 ~~~~~~~~~~ 296 (305)
T COG0341 287 LLLGKRREKK 296 (305)
T ss_pred HHHHHhHhhc
Confidence 8886654443
No 80
>PRK08343 secD preprotein translocase subunit SecD; Reviewed
Probab=98.56 E-value=1.7e-06 Score=103.22 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=118.3
Q ss_pred CCCeEEEEccchhHHHHHHhhhch-hhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHH
Q 000819 608 SKNLTLAFSSESSIEEELKRESTA-DAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 608 ~~~l~v~f~~~~sl~del~~~s~~-d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl 686 (1268)
+.++++...+. +...+.+.... -+...+++++++++|+.+.++.+ .+.+...+...+.++..+|+
T Consensus 240 P~~~~i~~~~~--v~~slg~~~~~~~l~a~ii~~ilVl~~m~~~yr~~------------~~i~~iaL~~~~~v~~~lg~ 305 (417)
T PRK08343 240 PVKLDIEGSGS--VSPSLGEQFKKGSLIAGLLALLAVALVVFLRYREP------------RIALPMVITSLSEVIIILGF 305 (417)
T ss_pred CCCeEEEEccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
Confidence 44677766543 33333333222 22334556666666665554331 22222222334567788999
Q ss_pred HHhhccccchhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchH
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPA 766 (1268)
Q Consensus 687 ~~~~Gi~~~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~ 766 (1268)
+.++|.++|+ ...+--.+.+|++||+.++++++.+++.. .+.++++...++++..+|+.+++|++++|+.+.+.....
T Consensus 306 l~l~g~tLtl-~~IaGlIl~iGmaVD~~IvI~e~i~~~~~-~~~~~ai~~g~~~a~~~Il~t~lTTiia~lpL~~~g~g~ 383 (417)
T PRK08343 306 AALIGWQLDL-ASIAGIIAVIGTGVDDLIIITDEVLHEGK-VPSRKVFLSRIKRAFFIIFAAAATTIAAMSPLAVMGLGD 383 (417)
T ss_pred HHHHCCCccH-HHHHHHHHHHHHeeeCcEEEhHHHHHhCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999997 45555568899999999999988765432 267888999999999999999999999999988777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 767 CRVFSMFAALAVLLDFLLQITAFVALI 793 (1268)
Q Consensus 767 vr~F~i~aa~~v~~~~l~~lt~fpalL 793 (1268)
+|.|++...+|++++.+++=-++--++
T Consensus 384 ikgfAitliiGii~s~~iTrp~~~~~~ 410 (417)
T PRK08343 384 LKGFAITTILGVLIGVLITRPAYGDII 410 (417)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997666555544443
No 81
>COG0342 SecD Preprotein translocase subunit SecD [Intracellular trafficking and secretion]
Probab=98.44 E-value=2.6e-06 Score=103.71 Aligned_cols=150 Identities=15% Similarity=0.150 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccccee
Q 000819 636 IVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC 715 (1268)
Q Consensus 636 ~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~ 715 (1268)
-+++++++++|+.+.+| ..|+.+.+..++.++..+|+++++|..+|+ ....=-.|.+|++||.-+
T Consensus 349 gl~g~~~V~vfm~~~Yr--------------~~Gvia~ial~~n~~lil~vls~lgatLtL-pgIAGiILtIGmaVDaNV 413 (506)
T COG0342 349 GLIGLALVAVFMLLYYR--------------LAGVIAAIALGLNGVLILAVLSLLGATLTL-PGIAGIILTIGMAVDANV 413 (506)
T ss_pred HHHHHHHHHHHHHHHHH--------------HhHHHHHHHHHHHHHHHHHHHHHhcccccc-hhhhHHHHhhhhcccccE
Confidence 45666677777666543 247888888888999999999999999997 444444577888899999
Q ss_pred hHHHHHHHh-cCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000819 716 ILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFAALAVLLDFLLQITAFVALIV 794 (1268)
Q Consensus 716 ~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~aa~~v~~~~l~~lt~fpalL~ 794 (1268)
++..|.+++ +.+.+...++.+.++++..+|+=+.+||+++-+++.+...-++|-|++..++||+++++..+++.=.++.
T Consensus 414 lI~ERIrEElr~G~s~~~ai~~G~~rAf~tI~DsN~TTlia~~~L~~~GtG~vKGFA~Tl~lGi~~smfta~~~tr~l~~ 493 (506)
T COG0342 414 LIFERIREELRNGKSVLSAIDAGFKRAFSTILDSNATTLIAAAILFALGTGPVKGFAVTLILGILTSMFTAIPVTRLLLN 493 (506)
T ss_pred EeeHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999986 5789999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred Hhhhcc
Q 000819 795 FDFLRA 800 (1268)
Q Consensus 795 l~~rr~ 800 (1268)
+..++.
T Consensus 494 ~~~~~~ 499 (506)
T COG0342 494 LLVGRR 499 (506)
T ss_pred HHhccc
Confidence 766544
No 82
>COG4258 Predicted exporter [General function prediction only]
Probab=98.43 E-value=1.1e-06 Score=103.60 Aligned_cols=153 Identities=19% Similarity=0.237 Sum_probs=109.5
Q ss_pred EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhcccc
Q 000819 615 FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (1268)
Q Consensus 615 f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~ 694 (1268)
|..-.|-.|++-..=..++.....+-+.+.+.+.++.+.|+ -++..++++.+++.+.+..+.+.|+++
T Consensus 630 fvD~ks~~drLfaaYr~~la~~laga~alvl~la~a~rgwR------------rglrvllP~v~a~~~~~A~~a~aGvpl 697 (788)
T COG4258 630 FVDRKSTFDRLFAAYRYVLAGLLAGALALVLCLAVARRGWR------------RGLRVLLPSVLALGCGLAVLAMAGVPL 697 (788)
T ss_pred hhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 33333333444332223333444444444455555666553 277888999999999999999999999
Q ss_pred chhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccCchHHHHHHHHH
Q 000819 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMPACRVFSMFA 774 (1268)
Q Consensus 695 ~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p~vr~F~i~a 774 (1268)
|+ ..-+.-.|++|||+||+.++-++-+ .+. |.+. +-.++.++++||.++|.++.+|.+|.++.||+..
T Consensus 698 nL-fhllal~LvlgvG~nYalFfs~~~~--~~a----e~lt-----tl~alala~ltTlltfgLLa~Sa~pvLssfG~tl 765 (788)
T COG4258 698 NL-FHLLALVLVLGVGINYALFFSNAGD--PRA----EPLT-----TLLALALAMLTTLLTFGLLAFSATPVLSSFGITL 765 (788)
T ss_pred hH-HHHHHHHHHHHcccchhhhhhcccC--CCC----chHH-----HHHHHHHHHHHHHHHHHHHHhcccHHHHHhhHHH
Confidence 97 4556667999999999988765441 111 1111 4457889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000819 775 ALAVLLDFLLQITAFVA 791 (1268)
Q Consensus 775 a~~v~~~~l~~lt~fpa 791 (1268)
+.|++++|++.....|.
T Consensus 766 asGiila~vlApL~mp~ 782 (788)
T COG4258 766 ASGIILAFVLAPLAMPD 782 (788)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999887766553
No 83
>KOG1935 consensus Membrane protein Patched/PTCH [Signal transduction mechanisms]
Probab=98.40 E-value=3e-06 Score=103.01 Aligned_cols=127 Identities=18% Similarity=0.280 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHHHhhceeecceeeeehhhhccCCCHHHHHHHHHHHHHHHHHHHHH
Q 000819 1121 SAIILLVLTMIVVDLMGVMAILKIQLNAVS-VVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGIT 1199 (1268)
Q Consensus 1121 ~li~~~~i~~~~v~~~G~M~l~gi~LN~vS-~v~l~iaiGi~VDfsiHi~~~f~~~~~~~~~r~~~al~~~g~~V~~g~~ 1199 (1268)
++.-++.+.++.+.-+|+-.++||.+|+.| -|..-+++|++||+---++|+|.+..+. .+++..-|+++|.+|+.++
T Consensus 444 glaGVllv~~ssaaGLGl~t~lGI~FNAAtTQVvPFLaLGlGVDd~FlL~hay~e~~~~-~~~~~~~lk~tG~Svl~ts- 521 (1143)
T KOG1935|consen 444 GLAGVLLVTFSSAAGLGLATLLGIEFNAATTQVVPFLALGLGVDDMFLLLHAYREVVKL-HEEMGELLKETGMSVLLTS- 521 (1143)
T ss_pred hhhhhhhhhhHhhcchhHHHHhceeeccccceeehhhhhccChhHHHHHHHHHHHHhhh-HHHHHHHHHHhCcchhHHH-
Confidence 444444555666667899999999999974 5788899999999999999999987543 7999999999999999988
Q ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 000819 1200 LTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPP 1250 (1268)
Q Consensus 1200 lTt~~G~~vL~fs~~~i~~~f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~ 1250 (1268)
+.++++|+.-++.+.+..+.|- .--.+++.+-++..|++.|+++|+=-++
T Consensus 522 inni~aF~~aallPIPALrsFc-lQaaIvl~fnfia~llifPAiisiDLrR 571 (1143)
T KOG1935|consen 522 INNILAFLMAALLPIPALRSFC-LQAAIVLTFNFIAVLLIFPAIISIDLRR 571 (1143)
T ss_pred hhhHHHHHHHhhcCcHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5899999999999999999983 3334567788999999999999985433
No 84
>TIGR00920 2A060605 3-hydroxy-3-methylglutaryl-coenzyme A reductase.
Probab=97.40 E-value=0.0011 Score=83.45 Aligned_cols=129 Identities=13% Similarity=0.122 Sum_probs=105.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHhhceeecceeeeehhhhcc--CCCHHHHHHHHHHHHHHHHH
Q 000819 1118 FWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--SGDKNQRMKEALGTMGASVF 1195 (1268)
Q Consensus 1118 ~~~~li~~~~i~~~~v~~~G~M~l~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~--~~~~~~r~~~al~~~g~~V~ 1195 (1268)
++.++.-++++.++++..+|++.++|++++.+.-+..-+.++++||..--+++..... ..+..+|+.+++.++|++++
T Consensus 90 ~~LGlaGV~~V~~Svv~S~Gl~s~lG~~~t~I~eViPFLvLaIGVDnifiLa~~~~~t~~~~~v~eRIa~~l~~vGpSIt 169 (886)
T TIGR00920 90 YILGIAGLFTIFSSFVFSTAVIHFLGSELTGLNEALPFFLLLIDLSKASALAKFALSSNSQDEVRDNIARGMAILGPTIT 169 (886)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhHHHhhhchhhHHHHHhhhhccCCCCCHHHHHHHHHHHhcccee
Confidence 5557777788889999999999999999999877777777777889988776552122 24678999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhCC
Q 000819 1196 SGITLTKLVGVIVLCFSRTEVFVVYYFQMYL-ALVLLGFLHGLVFLPVVLSVFGP 1249 (1268)
Q Consensus 1196 ~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~-~~v~~~~l~~Li~LPvlLs~~gp 1249 (1268)
..+ +|-++.|.+=++++.+-.+.| -++. +.+++-++.=+.|+|++|++.+.
T Consensus 170 lts-lte~l~F~vGtls~mPAV~~F--c~ya~vAVl~nyllQmTfF~A~LsL~~~ 221 (886)
T TIGR00920 170 LDT-VVETLVIGVGTMSGVRRLEVL--CCFGCMSVLANYFVFMTFFPACLSLVLE 221 (886)
T ss_pred HHH-HHHHHHHHHhccCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 886 588888888899999989987 3333 45889999999999999998864
No 85
>PF03024 Folate_rec: Folate receptor family; InterPro: IPR018143 This entry represents a domain found in folate receptors and at the N terminus of hedgehog-interacting proteins. Folate receptors bind to folate and reduced folic acid derivatives and mediate delivery of 5-methyltetrahydrofolate to the interior of cells. These proteins are attached to the membrane by a GPI-anchor. A riboflavin-binding protein required for the transport of riboflavin to the developing oocyte in chicken also belong to this family.; PDB: 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B.
Probab=95.39 E-value=0.0042 Score=65.65 Aligned_cols=96 Identities=26% Similarity=0.508 Sum_probs=0.0
Q ss_pred HHHHhhCCCCCCCCCCCHHHHHHHHHHHH-hhhhh-ccC----ChhHHhhHhhhccccccCCCCCcceEEEeecccCCCe
Q 000819 85 SKVQSLCPTITGNVCCTEDQFDTLRTQVQ-QAIPF-LVG----CPACLRNFLNLFCELTCSPNQSLFINVTSVSKVSNNL 158 (1268)
Q Consensus 85 ~~l~~~Cp~~~~~~CC~~~Q~~~l~~~~~-~~~~~-~~~----CpaC~~Nf~~~~C~~tCsP~Qs~F~~v~~~~~~~~~~ 158 (1268)
..|...|..+....||+.++.+.+..... .+..+ ..+ =|.|.+=|.++.|-+-|||++..+ .. . ..+.
T Consensus 16 ~~L~~~C~~y~~~sCC~~~~~~~l~~~~~~~~~~~~~~~cg~~s~~C~~~~~~~~Cfy~CsP~~~~~-~~--~---~~~~ 89 (167)
T PF03024_consen 16 PDLASFCSPYKDNSCCTAETDQELARRPSNLVYNFDWDHCGELSPRCERFFKQLECFYECSPNAGHW-QA--E---DRKT 89 (167)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhcCCCCCCCCcCccccHHHHhCcchhcccchhhccccchHHHHHHHHHHhhhccCCcccccc-cc--C---CcCC
Confidence 34677899998899999999999998877 33332 223 379999999999999999999999 21 1 1122
Q ss_pred eEEEEEEEEcchhchHHhhccccCccCCCC
Q 000819 159 TVDGIDYYITDTFGQGLYESCKDVKFGTMN 188 (1268)
Q Consensus 159 ~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~ 188 (1268)
.+..+- |=++|=+..|+.||+..+...+
T Consensus 90 ~~~~~P--LC~~~Cd~wf~aCk~d~tc~~~ 117 (167)
T PF03024_consen 90 RIRGVP--LCASFCDDWFEACKDDYTCGSN 117 (167)
T ss_dssp ------------------------------
T ss_pred ccCCCC--cCHHHHHHHHHHhhhHHhccCc
Confidence 355555 7899999999999998876554
No 86
>KOG1933 consensus Cholesterol transport protein (Niemann-Pick C disease protein) [Lipid transport and metabolism]
Probab=90.67 E-value=0.094 Score=69.39 Aligned_cols=172 Identities=18% Similarity=0.184 Sum_probs=111.6
Q ss_pred EccchhHHHHHHhhhchhhHHHHHHHHHHHHHHHHHhCCCCCCccccccccchhhhHHHHHHHHHHHHHHHHHHhhcccc
Q 000819 615 FSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFSAIGVKS 694 (1268)
Q Consensus 615 f~~~~sl~del~~~s~~d~~~~~is~llm~~yv~~~l~~~~~~~~~~v~Sk~~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~ 694 (1268)
|+.--+..+........-...+.++.+.+|+.....++-- ++| +++-++...+.++--+|+|.++|+.+
T Consensus 1004 ys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l~~~-------~~s----s~i~~~~~~~~~v~l~g~m~~~~I~~ 1072 (1201)
T KOG1933|consen 1004 YSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLLGLD-------VDS----SLIMVLVDEMILVNLVGFMYLWGISL 1072 (1201)
T ss_pred eeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhccc-------ccc----ceeeeeehhhhhhhHHHHHHhhceee
Confidence 4333344444443333333334556666666555544321 333 33445666777788899999999999
Q ss_pred chhhhhHHHHHhhhccccceehHHHHHHHhcCCCCHHHHHHHHHHhhhhHHH-HHHHHHHHHHHhhcccCch--HHHHHH
Q 000819 695 TLIIMEVIPFLVLAVGVDNMCILVHAVKRQQLELPLETRISNALVEVGPSIT-LASLSEVLAFAVGSFIPMP--ACRVFS 771 (1268)
Q Consensus 695 ~~i~~~v~pflvl~iGvd~~~~l~~~~~~~~~~~~~~~~i~~al~~~g~si~-~tslt~~~~F~~~~~s~~p--~vr~F~ 771 (1268)
+. ++.+--.+-+||+|+...||+|.+.... +.+..+|..+++...|.+++ -.++|...+-..+.+.+.. .+..|.
T Consensus 1073 Na-vS~vNlvm~vgi~vef~~hi~~sf~~s~-~~~~~~ra~~~l~s~Gs~v~sgitlt~~~~~~vl~fa~s~i~~~~~f~ 1150 (1201)
T KOG1933|consen 1073 NA-VSLVNLVMSVGIAVEFCVHITHSFATSS-GPDATERAEEALNSIGSSVFSGITLTKFGGIIVLSFAKSQIFQVFYFR 1150 (1201)
T ss_pred hh-hhhhhhhhhcchhhhHHHHhhcceeecc-CCchhHHHHHHHhccCcceecceeehhcCceEEEeeccccEEEEEeeh
Confidence 97 4555566778999999999999987543 23788999999999999764 3344555554555554444 456666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000819 772 MFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 772 i~aa~~v~~~~l~~lt~fpalL~l~~rr~ 800 (1268)
++.+..++-+.-- +.|+|.+|++.++-.
T Consensus 1151 ~~l~~~l~~a~hG-liflpvlls~~g~~~ 1178 (1201)
T KOG1933|consen 1151 MYLGIVLVGALHG-LIFLPVLLSLLGPES 1178 (1201)
T ss_pred HHHHHHHHHheee-eeehhhHHHhcCCcc
Confidence 7777666644444 889999999877433
No 87
>KOG3664 consensus Predicted patched transmembrane receptor [Signal transduction mechanisms]
Probab=68.61 E-value=2.6 Score=54.88 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=83.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHH-HHHHhccccch-HHHHHHHHhhceeecceeeeehhhhccC-------------
Q 000819 1112 LITTCSFWSSAIILLVLTMIVVDLMG-VMAILKIQLNA-VSVVNLVMAVGIAVEFCVHITHAFSVSS------------- 1176 (1268)
Q Consensus 1112 ~ll~~s~~~~li~~~~i~~~~v~~~G-~M~l~gi~LN~-vS~v~l~iaiGi~VDfsiHi~~~f~~~~------------- 1176 (1268)
.+..+|+..+++.++.+.+......+ .-..+||.+=. +-.+..++.|||++|++-.+...|.++.
T Consensus 343 ~i~t~s~f~tf~~~~~i~ls~~~a~f~y~vv~~i~~fp~lnlv~~vv~i~Ig~dd~fl~~~~~~~~~~r~l~~~~~~~~~ 422 (999)
T KOG3664|consen 343 WIYTGSAFITFMSIVAICLSLGVALFFYAVVLGIDFFPYLNLVAVVVIIGIGADDVFLFLKIYERSNLRMLHTQSQSASF 422 (999)
T ss_pred EEecCcHHHHHHHHHHHHHHhhHHHhhheeeehhhhhhhhhhhheeeeeecccccceeehhhhhhhhHHHHHHHHhhccc
Confidence 34447888787777777766655433 33344554333 3556677889999999999998882210
Q ss_pred -------C-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhh
Q 000819 1177 -------G-DKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLA-LVLLGFLHGLVFLPVVLSVF 1247 (1268)
Q Consensus 1177 -------~-~~~~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f~f~m~~~-~v~~~~l~~Li~LPvlLs~~ 1247 (1268)
. .......-.+.....+++... +|+..++....-++...++-| +++.. .+..+..--..++|+..|+.
T Consensus 423 ~~~l~~~~~ll~~~~~l~~~h~~~smfvt~-~~t~~~f~~~~ssp~~~lrcf--g~~A~~~v~~n~~~~v~~lPa~~SI~ 499 (999)
T KOG3664|consen 423 FLELSDHTELLENVFALTLRHASFSMFVTS-LTTACAFYANYSSPVIVLRCF--GIFAGLTVVFNYLLVVLWLPASVSIA 499 (999)
T ss_pred ccccccchhHHHHHHhhhhhhhhHHHHHHH-HHHHhhhhhccccchHHHHHh--ccccccccccccceeEEeccchhhhh
Confidence 0 011223334444455666665 588889888887776666543 44433 35566666667888866665
Q ss_pred CCCC
Q 000819 1248 GPPS 1251 (1268)
Q Consensus 1248 gp~~ 1251 (1268)
-...
T Consensus 500 ~~~~ 503 (999)
T KOG3664|consen 500 LRLF 503 (999)
T ss_pred hccc
Confidence 4433
No 88
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=47.40 E-value=38 Score=36.21 Aligned_cols=21 Identities=5% Similarity=0.260 Sum_probs=11.7
Q ss_pred chhhHHHHHHHHHHHHHhhcc
Q 000819 1050 RQIDYVNSMRAAREFSSRVSD 1070 (1268)
Q Consensus 1050 ~~~d~~~~~~~~~~i~~~~~~ 1070 (1268)
+.+|.++.+-+-+++|+++.+
T Consensus 42 sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 42 SEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred CHHHHHHHcCCHHHHHHHHHH
Confidence 345555555555666666543
No 89
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=46.63 E-value=3.8e+02 Score=33.08 Aligned_cols=71 Identities=14% Similarity=0.207 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000819 1181 QRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVY-YFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1181 ~r~~~al~~~g~~V~~g~~lTt~~G~~vL~fs~~~i~~~f-~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~ 1253 (1268)
...+.-.++.+..++.|.++..+.++...++.....+... ...++ +.++++.+.|. ++|.++..+|-.+..
T Consensus 350 ~~~~~~~~e~~v~~~~g~~~g~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~G~-~lp~~~~k~~~DPa~ 421 (449)
T TIGR00400 350 DFFKVILREICVSILVGAILASVNFLRIVFFQGKLLIAFVVSSSLF-VSLTVAKILGG-LLPIVAKLLKLDPAL 421 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHcCCChhh
Confidence 4456667888888888776655555555444222222211 11222 23334444433 479999998876643
No 90
>COG4709 Predicted membrane protein [Function unknown]
Probab=44.10 E-value=1.6e+02 Score=31.58 Aligned_cols=21 Identities=5% Similarity=0.246 Sum_probs=10.9
Q ss_pred chhhHHHHHHHHHHHHHhhcc
Q 000819 1050 RQIDYVNSMRAAREFSSRVSD 1070 (1268)
Q Consensus 1050 ~~~d~~~~~~~~~~i~~~~~~ 1070 (1268)
+.++.++.+.+=+++|.++.+
T Consensus 42 sE~EI~~~LG~P~eiA~ei~s 62 (195)
T COG4709 42 SEEEIAKDLGDPKEIAAEILS 62 (195)
T ss_pred CHHHHHHHhCCHHHHHHHHHH
Confidence 344455555555555555543
No 91
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=43.82 E-value=7.2e+02 Score=30.78 Aligned_cols=98 Identities=16% Similarity=0.223 Sum_probs=54.4
Q ss_pred hccccchHHHHHHHHhhceeecceeeeehhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccc-hhHHH
Q 000819 1142 LKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGASVFSGITLTKLVGVI-VLCFSRT-EVFVV 1219 (1268)
Q Consensus 1142 ~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~~~~~~r~~~al~~~g~~V~~g~~lTt~~G~~-vL~fs~~-~i~~~ 1219 (1268)
.|..=|+.|-...++.=|++..-. +.....+--.++++...+.|.++..++|+- +..+... .+.-+
T Consensus 322 ~g~gGN~GsQ~~tvivRaLa~~~i------------~~~~~~~vl~rE~~vG~~~G~vl~~~~~~~~~~~~~~~~~l~~~ 389 (451)
T COG2239 322 AGMGGNAGTQAATVIVRALALGEI------------SLKNVFRVLLKELGVGLLLGLVLAIIIGLRVPAWLYGGLLLGLI 389 (451)
T ss_pred ecCCCcHHHHHHHHHHHhhccccc------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHH
Confidence 455557777666666666664432 223445667788999999998766566653 2333332 11111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCcc
Q 000819 1220 YYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1220 f~f~m~~~~v~~~~l~~Li~LPvlLs~~gp~~~~ 1253 (1268)
....| ++.+++|.+ .-+++|.++..+|-.+..
T Consensus 390 v~~al-~~~~~~A~l-~G~~iP~ll~kl~~DPAv 421 (451)
T COG2239 390 VALAL-LLNILFAAL-VGVLIPILLKKLGLDPAV 421 (451)
T ss_pred HHHHH-HHHHHHHHH-hhchHHHHHHHcCCCchh
Confidence 11112 222333333 345789999988766543
No 92
>COG3301 NrfD Formate-dependent nitrite reductase, membrane component [Inorganic ion transport and metabolism]
Probab=39.45 E-value=6.5e+02 Score=29.03 Aligned_cols=97 Identities=19% Similarity=0.147 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhhhhHHHHHhhhcccccee---hHHHHHHHhcCCCCHHHHHHHHHHhhhhHHHHHH
Q 000819 673 VVLVMLSVLGSVGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMC---ILVHAVKRQQLELPLETRISNALVEVGPSITLAS 749 (1268)
Q Consensus 673 vl~v~~sv~~s~Gl~~~~Gi~~~~i~~~v~pflvl~iGvd~~~---~l~~~~~~~~~~~~~~~~i~~al~~~g~si~~ts 749 (1268)
++.+.++.-+++=+-...|+|+-. +.++|.|-+.-|+.-.. .++...++ +++.++.-.+.+.+...++..+-
T Consensus 140 i~gi~~~aYTGflLaa~~giPFwN--np~LPvLfL~sg~sag~a~~~L~~lv~~---~~~~~~~~~~~~~r~~~~v~~~e 214 (305)
T COG3301 140 ILGVLLGAYTGFLLAALKGIPFWN--NPALPVLFLFSGLSAGSAALILLMLVRT---RENPHSTESKFLHRFEIPVVVTE 214 (305)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccc--CchhHHHHHHhhhhhhHHHHHHHHHHhc---CCCccchhhHHHHHHHHHHHHHH
Confidence 334444444455555567888853 67899888777665332 22233322 22344555677888888898888
Q ss_pred HHHHHHHHhhc-ccCchHHHHHHHHH
Q 000819 750 LSEVLAFAVGS-FIPMPACRVFSMFA 774 (1268)
Q Consensus 750 lt~~~~F~~~~-~s~~p~vr~F~i~a 774 (1268)
+-...+|+.+. +-+.-+.|.+.-..
T Consensus 215 ll~la~f~~l~~~G~~a~~~a~~~al 240 (305)
T COG3301 215 LLLLAAFFVLLSLGGVAAARALATAL 240 (305)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 88888888764 55666666655433
No 93
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=35.09 E-value=44 Score=33.50 Aligned_cols=11 Identities=18% Similarity=-0.013 Sum_probs=4.0
Q ss_pred HHHHHhhhhcc
Q 000819 305 FGWGFFHRKRE 315 (1268)
Q Consensus 305 ~~~~~~~~~~~ 315 (1268)
+++++++|+|+
T Consensus 83 li~y~irR~~K 93 (122)
T PF01102_consen 83 LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHhc
Confidence 33444444333
No 94
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=33.11 E-value=14 Score=41.37 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhH
Q 000819 1097 LINLAIAIGAVFVVCLITTCSFWS 1120 (1268)
Q Consensus 1097 ~~~l~~al~~v~vv~~ll~~s~~~ 1120 (1268)
+.++.+-+++|.+++++|-|.+..
T Consensus 55 l~sfAvvliiIIiIImlF~RrLLC 78 (381)
T PF05297_consen 55 LYSFAVVLIIIIIIIMLFKRRLLC 78 (381)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcC
Confidence 334444444445555555555543
No 95
>PF03649 UPF0014: Uncharacterised protein family (UPF0014); InterPro: IPR005226 This family has no known function. It includes potential membrane proteins.
Probab=30.06 E-value=8.6e+02 Score=27.60 Aligned_cols=43 Identities=7% Similarity=0.149 Sum_probs=23.3
Q ss_pred hhhHHHHH--hhhccccceehHHHHHHHh------------cCCCCHHHHHHHHHHh
Q 000819 698 IMEVIPFL--VLAVGVDNMCILVHAVKRQ------------QLELPLETRISNALVE 740 (1268)
Q Consensus 698 ~~~v~pfl--vl~iGvd~~~~l~~~~~~~------------~~~~~~~~~i~~al~~ 740 (1268)
.-.++|.. ++|=+..-.-+-.++|.++ .-|.+++|+....+++
T Consensus 123 ~r~~IPi~GMiiGNsm~a~slal~r~~~~l~~~~~~ie~~LalGat~~eA~~~~~r~ 179 (250)
T PF03649_consen 123 PRYLIPIAGMIIGNSMNAVSLALERFYSELRERRDEIEALLALGATPREAVRPFIRR 179 (250)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 46788874 4443344444455555432 1367788886554443
No 96
>PF02754 CCG: Cysteine-rich domain; InterPro: IPR004017 This domain is usually found in two copies per protein. It contains up to four conserved cysteines. The group includes proteins characterised as: heterodisulphide reductase, subunit B (HrdB); succinate dehydrogenase, subunit C (SdhC, 1.3.99.1 from EC); Fe-S oxidoreductase; glycerol-3-phosphate dehydrogenase subunit C (Anaerobic GlpC, 1.1.99.5 from EC); and glycolate oxidase iron-sulphur subunit (GlcF) [].
Probab=30.03 E-value=66 Score=28.85 Aligned_cols=48 Identities=15% Similarity=0.474 Sum_probs=29.1
Q ss_pred hHHHHHhhCCCCC---CCCCCCHHHH---------HHHHHHHHhhh-----hhccCChhHHhhHh
Q 000819 83 LSSKVQSLCPTIT---GNVCCTEDQF---------DTLRTQVQQAI-----PFLVGCPACLRNFL 130 (1268)
Q Consensus 83 ~~~~l~~~Cp~~~---~~~CC~~~Q~---------~~l~~~~~~~~-----~~~~~CpaC~~Nf~ 130 (1268)
....+....-++. +..||-.... +..+.+++.++ .++.-||+|..+|+
T Consensus 21 ~~~l~~~~g~~~~~~~~~~CCG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~C~~~lr 85 (85)
T PF02754_consen 21 LRKLLNKLGIEVVIPENQQCCGAPGYFAGDEELAEKVAKRNLKEIKEAGADTIVTPCPSCYMQLR 85 (85)
T ss_pred HHHHHHHcCceeeecCCCCCCChHHHHcCchhhHHHHHHHHHHHHHHcCCCEEEEeChhHHHhhC
Confidence 3444455444432 4689976554 33444454444 36789999999875
No 97
>PRK02935 hypothetical protein; Provisional
Probab=28.08 E-value=2.2e+02 Score=27.73 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccccch
Q 000819 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1268)
Q Consensus 667 ~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~ 696 (1268)
++....++.-.+++++|.+++.|.|.-.+-
T Consensus 38 ~~m~ifm~~G~l~~l~S~vvYFwiGmlStk 67 (110)
T PRK02935 38 IIMTIFMLLGFLAVIASTVVYFWIGMLSTK 67 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 344455667778888899999999986553
No 98
>PRK15081 glutathione ABC transporter permease GsiC; Provisional
Probab=27.69 E-value=1e+03 Score=27.73 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=14.6
Q ss_pred CeEEEEccchhHHHHHHhhhchhhH
Q 000819 610 NLTLAFSSESSIEEELKRESTADAI 634 (1268)
Q Consensus 610 ~l~v~f~~~~sl~del~~~s~~d~~ 634 (1268)
++-.++...+++.+++.+.....+.
T Consensus 76 d~G~S~~~~~~V~~~i~~~lp~Tl~ 100 (306)
T PRK15081 76 DFGTSMVSRRPVSEEIASRFMPTLW 100 (306)
T ss_pred CCccCCCCCCCHHHHHHHHHHHHHH
Confidence 4444555556787888765444433
No 99
>PRK10352 nickel transporter permease NikB; Provisional
Probab=26.51 E-value=1e+03 Score=27.89 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=15.8
Q ss_pred CCeEEEEccchhHHHHHHhhhchhhHH
Q 000819 609 KNLTLAFSSESSIEEELKRESTADAIT 635 (1268)
Q Consensus 609 ~~l~v~f~~~~sl~del~~~s~~d~~~ 635 (1268)
.++-.++...+++.+++.+.....+..
T Consensus 78 gd~G~S~~~g~~V~~~i~~~l~~Tl~L 104 (314)
T PRK10352 78 LDFGISFATQRPVLDDLLNFLPATLEL 104 (314)
T ss_pred CCCCccCCCCCcHHHHHHHHHHHHHHH
Confidence 345455655677877777655444443
No 100
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=26.07 E-value=2e+02 Score=28.36 Aligned_cols=30 Identities=27% Similarity=0.342 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhccccch
Q 000819 667 LLGLSGVVLVMLSVLGSVGFFSAIGVKSTL 696 (1268)
Q Consensus 667 ~l~l~gvl~v~~sv~~s~Gl~~~~Gi~~~~ 696 (1268)
++....++.-+++++++.+++.|.|.-.+-
T Consensus 37 ~im~ifmllG~L~~l~S~~VYfwIGmlStk 66 (114)
T PF11023_consen 37 IIMVIFMLLGLLAILASTAVYFWIGMLSTK 66 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 445555666788999999999999986553
No 101
>PRK09471 oppB oligopeptide transporter permease; Reviewed
Probab=25.17 E-value=8.6e+02 Score=28.24 Aligned_cols=30 Identities=10% Similarity=0.093 Sum_probs=15.7
Q ss_pred CeEEEEcc-chhHHHHHHhhhchhhHHHHHH
Q 000819 610 NLTLAFSS-ESSIEEELKRESTADAITIVIS 639 (1268)
Q Consensus 610 ~l~v~f~~-~~sl~del~~~s~~d~~~~~is 639 (1268)
++-.++.. .+++.+++.+.....+...+.+
T Consensus 74 d~G~S~~~~~~~V~~~i~~~l~~Tl~l~~~a 104 (306)
T PRK09471 74 DFGPSFKYKDYSVNDLVASSFPVSAKLGAAA 104 (306)
T ss_pred CCccCCcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33344433 3578888877655444443333
No 102
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=24.89 E-value=3.4e+02 Score=33.25 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000819 1228 LVLLGFLHGLVFLPVVLS 1245 (1268)
Q Consensus 1228 ~v~~~~l~~Li~LPvlLs 1245 (1268)
+++++++.|++|.=.+.+
T Consensus 388 ~~l~s~~~a~~~~~lv~~ 405 (418)
T cd07912 388 LLLFSLLAALLFTILVCV 405 (418)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 355667777666555443
No 103
>PRK15133 microcin C ABC transporter permease YejB; Provisional
Probab=24.21 E-value=1.1e+03 Score=28.16 Aligned_cols=25 Identities=8% Similarity=0.045 Sum_probs=13.5
Q ss_pred CeEEEEccchhHHHHHHhhhchhhH
Q 000819 610 NLTLAFSSESSIEEELKRESTADAI 634 (1268)
Q Consensus 610 ~l~v~f~~~~sl~del~~~s~~d~~ 634 (1268)
++-.++...+++.+++.+.....+.
T Consensus 114 d~G~S~~~~~pV~~~i~~~lp~Tl~ 138 (364)
T PRK15133 114 DFGDSLFRSASVLTLIKDSLPVSIT 138 (364)
T ss_pred cCccCCcCCCcHHHHHHHHhHHHHH
Confidence 3434443456777777765444333
No 104
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=23.57 E-value=1.3e+02 Score=28.12 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhhhccccccccccc
Q 000819 298 IILVSLFFGWGFFHRKRERSRSFRMKP 324 (1268)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (1268)
.+++++++.|+..+.+|+|+|..-.++
T Consensus 42 ~iFil~VilwfvCC~kRkrsRrPIYrP 68 (94)
T PF05393_consen 42 GIFILLVILWFVCCKKRKRSRRPIYRP 68 (94)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 344556666766666666666555544
No 105
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=22.31 E-value=1.5e+03 Score=30.11 Aligned_cols=31 Identities=10% Similarity=-0.025 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000819 768 RVFSMFAALAVLLDFLLQITAFVALIVFDFL 798 (1268)
Q Consensus 768 r~F~i~aa~~v~~~~l~~lt~fpalL~l~~r 798 (1268)
+.+.-++..+++-..+..+.++|.++.+...
T Consensus 211 ~~~~~~~~~~ilg~~lsa~~llP~~~~~l~~ 241 (843)
T PF09586_consen 211 KKILRFIGSSILGVGLSAFLLLPTILSLLQS 241 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5556677777777777788999999986543
No 106
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=21.92 E-value=1.4e+03 Score=27.13 Aligned_cols=31 Identities=16% Similarity=0.114 Sum_probs=17.4
Q ss_pred CeEEEEccchhHHHHHHhhhchhhHHHHHHH
Q 000819 610 NLTLAFSSESSIEEELKRESTADAITIVISY 640 (1268)
Q Consensus 610 ~l~v~f~~~~sl~del~~~s~~d~~~~~is~ 640 (1268)
++-.++...+++.+++.+.....+.....+.
T Consensus 77 d~G~S~~~~~pV~~~i~~~lp~Tl~L~~~a~ 107 (339)
T PRK10914 77 DLGISLKSRIPVWDEFVPRFKATLELGVCAM 107 (339)
T ss_pred CCcCcCcCCCcHHHHHHHHhHHHHHHHHHHH
Confidence 4444555556788888776554444433333
No 107
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=21.85 E-value=9.8e+02 Score=31.01 Aligned_cols=29 Identities=31% Similarity=0.324 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCccchhh
Q 000819 1229 VLLGFLHGLVFLPVVLSVFGPPSRCMLVE 1257 (1268)
Q Consensus 1229 v~~~~l~~Li~LPvlLs~~gp~~~~~~~~ 1257 (1268)
-+++.+.++=++|.+=..||-...-+..|
T Consensus 443 Gl~s~il~iGllP~fE~~F~~~T~~rL~E 471 (700)
T COG1480 443 GLLSGILVLGLLPYFEALFGLLTTFRLLE 471 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhHHH
Confidence 34455566778999999988655555444
No 108
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.37 E-value=1.2e+03 Score=32.74 Aligned_cols=13 Identities=8% Similarity=0.207 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhCC
Q 000819 641 LVMFAYISLTLGD 653 (1268)
Q Consensus 641 llm~~yv~~~l~~ 653 (1268)
+++.+|+.++|.+
T Consensus 31 lllAlfL~lALiS 43 (1355)
T PRK10263 31 VLFAVWLMAALLS 43 (1355)
T ss_pred HHHHHHHHHHHHh
Confidence 3333344444433
No 109
>PF09946 DUF2178: Predicted membrane protein (DUF2178); InterPro: IPR019235 This entry, found in various hypothetical bacterial and archaeal proteins, has no known function, but contains several predicted transmembrane helices.
Probab=20.89 E-value=5.3e+02 Score=25.46 Aligned_cols=20 Identities=10% Similarity=0.167 Sum_probs=13.6
Q ss_pred CchHHHHHHHHHHHHHHHHH
Q 000819 763 PMPACRVFSMFAALAVLLDF 782 (1268)
Q Consensus 763 ~~p~vr~F~i~aa~~v~~~~ 782 (1268)
+.|..++.++..+.++.+..
T Consensus 89 ~~p~~~~a~~~l~~~~~~~l 108 (111)
T PF09946_consen 89 SYPEYTDAGFVLAFSLAFML 108 (111)
T ss_pred cChhHhHHHHHHHHHHHHHH
Confidence 67788877777666665544
No 110
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=20.43 E-value=5.2e+02 Score=31.96 Aligned_cols=68 Identities=19% Similarity=0.342 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH---hccccchHHHHHHHHhhceeecceeeeehhhhccCCCHHHHHHHHHHHHHHH
Q 000819 1118 FWSSAIILLVLTMIVVDLMGVMAI---LKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSSGDKNQRMKEALGTMGAS 1193 (1268)
Q Consensus 1118 ~~~~li~~~~i~~~~v~~~G~M~l---~gi~LN~vS~v~l~iaiGi~VDfsiHi~~~f~~~~~~~~~r~~~al~~~g~~ 1193 (1268)
...++++++|+.+++... +..+ .++++|..+.+.+.+.+++.+|+. |+. +.++..+..+.-++.||.+
T Consensus 242 ~~YAlLP~lPliLil~~~--f~~~~~~~~i~l~v~~am~is~~ia~l~e~i----r~r--~~k~~~~~~~~ff~GMG~~ 312 (455)
T PRK09804 242 LYYAILPVMPLILMLGSL--FLAHVGLMQSELHLVVVMLLSLTVTMFVEFF----RKH--NLRETMDDVQAFFDGMGTQ 312 (455)
T ss_pred hHHHHHHHHHHHHHHHHH--hhcccccCceeecHHHHHHHHHHHHHHHHHH----Hhc--cchhHHHHHHHHHHHHHHH
Confidence 345666777766442211 3333 358999999999999999988854 111 1133445555556666654
No 111
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein. catalyzing fumarate-succinate exchange and fumarate uptake.
Probab=20.40 E-value=1.6e+03 Score=27.23 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=20.6
Q ss_pred cccchHHHHHHHHhhceeecceeeee
Q 000819 1144 IQLNAVSVVNLVMAVGIAVEFCVHIT 1169 (1268)
Q Consensus 1144 i~LN~vS~v~l~iaiGi~VDfsiHi~ 1169 (1268)
++++...++...+++.+++|..-|+.
T Consensus 213 ~~~~~~~~v~v~~~~~l~~~~~r~~n 238 (388)
T TIGR00771 213 VPLHEWTKMGVPQAMLIGAEFGRIVN 238 (388)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHcC
Confidence 78899999999998888877755444
Done!