Query 000819
Match_columns 1268
No_of_seqs 354 out of 2860
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 15:53:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000819.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_591-595//hhsearch_pdb/000819hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qnt_A Niemann-PICK C1-like pr 1.0 1 1 554.9 14.2 235 44-285 5-263 (265)
2 3gkj_A Niemann-PICK C1 protein 1.0 1 1 531.0 8.8 214 50-268 2-231 (232)
3 2v50_A Multidrug resistance pr 1.0 1 1 276.9 39.8 584 608-1251 318-1031(1052)
4 4dx5_A Acriflavine resistance 1.0 1 1 276.1 44.5 590 608-1253 318-1035(1057)
5 3ne5_A Cation efflux system pr 1.0 1 1 268.9 35.0 593 608-1251 323-1049(1054)
6 3aqp_A Probable secdf protein- 1.0 1 1 266.6 46.9 469 608-1253 251-729 (741)
7 2v50_A Multidrug resistance pr 1.0 1 1 173.9 18.1 175 608-799 851-1030(1052)
8 4dx5_A Acriflavine resistance 1.0 1 1 167.1 22.4 178 607-801 851-1034(1057)
9 3ne5_A Cation efflux system pr 1.0 1 1 163.5 13.2 178 607-800 857-1049(1054)
10 3aqp_A Probable secdf protein- 1.0 1 1 161.1 18.2 175 609-801 551-728 (741)
No 1
>3qnt_A Niemann-PICK C1-like protein 1; cholesterol transport protein, transport protein; HET: NAG; 2.83A {Homo sapiens}
Probab=1.00 E-value=1 Score=554.91 Aligned_cols=235 Identities=32% Similarity=0.623 Sum_probs=211.9
Q ss_pred CCCCCCCCCEEECCCCCCCCC-------CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC---CC-CCCCHHHHHHHHHHH
Q ss_conf 656887767056345799989-------9845689999999999256789983198998---99-889988899999999
Q 000819 44 GEVKHVEEFCAMYDICGARSD-------RKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GN-VCCTEDQFDTLRTQV 112 (1268)
Q Consensus 44 ~~~~~~~~~C~~~g~C~~~~~-------~~~~~C~~~~~~~~~~~~~~~~l~~~Cp~~~---~~-~CC~~~Q~~~l~~~~ 112 (1268)
.+.+|+.|+|+|||+||++++ ++++||+||++|++++++++++|+++||+++ +. +|||++|+++|++||
T Consensus 5 ~~~~~~~g~C~~yg~Cg~~~~~~~~~~~~~~l~C~~n~~a~~~~~~~~~~L~~~Cp~~~~~~~~~~CC~~~Ql~~L~~nl 84 (265)
T 3qnt_A 5 YTTIHQPGYCAFYDECGKNPELSGSLMTLSNVSCLSNTPARKITGDHLILLQKICPRLYTGPNTQACCSAKQLVSLEASL 84 (265)
T ss_dssp SCCCCCTTBCSEEEEEECCTTSCTTSCCCCCEEEECCCBCEECCHHHHHHHHHHSGGGCCSSSCEESCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHH
T ss_conf 66756788206706668875434454679633589998587989899999998693855579888778999999999988
Q ss_pred HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCC--CCEEEEEEEEEECCHHCHHHHHCCCCCCCCCCCHH
Q ss_conf 8642110399258934863110344587888643899611248--87017999999740010488521325866777825
Q 000819 113 QQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVSKVS--NNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTR 190 (1268)
Q Consensus 113 ~~~~~~~~~CpaC~~Nf~~~~C~~tCsP~Qs~F~~v~~~~~~~--~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~ 190 (1268)
++++++|+|||||++||++|||+|||||+||+||+||++.+.+ ++..|+|++|||+++||+++|||||||+||+||++
T Consensus 85 ~~a~~il~rCPaC~~Nf~~lfC~~TCSP~QS~Fl~vt~t~~~~~~~~~~V~eldy~i~~~fa~~~YdSCKdV~~p~tn~~ 164 (265)
T 3qnt_A 85 SITKALLTRCPACSDNFVNLHCHNTCSPNQSLFINVTRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATL 164 (265)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHCTTGGGTEEEEEEECCSSSSCCEEEEEEEEEEHHHHHHHHHHHTTCBCTTSSCB
T ss_pred HHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 87787757491789999987548778977036264686023578876648999999877886667544207544555642
Q ss_pred HHHHCCC--CCC--CHHHHHHHHCCCCCCCCCCCCEEEEECCCCC---CCCCCCCCCCCCCCCCCC----CCCCCCCCCC
Q ss_conf 7651379--987--8898998620147899999961588427999---998854488887687999----9885566799
Q 000819 191 ALDFIGG--GAQ--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAP---ELSGMIPMNVSAYSCADG----SLGCSCGDCT 259 (1268)
Q Consensus 191 am~~~gg--~a~--~~~~~l~flG~~~~~~~~~sPf~inf~~~~~---~~~~~~~~~~~~~~C~~~----~~~CsC~dC~ 259 (1268)
|||+||| ||+ ||++||+|||+++ |++|||||||++++. .+.||+|||..+++|||. .++|||+||+
T Consensus 165 Am~l~cG~~gA~~Cn~~~wl~flG~~~---n~~sPFqInf~~~~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~ 241 (265)
T 3qnt_A 165 AVGTMCGVYGSALCNAQRWLNFQGDTG---NGLAPLDITFHLLEPGQAVGSGIQPLNEGVARCNESQGDDVATCSCQDCA 241 (265)
T ss_dssp TTGGGSTTSCSSSCCHHHHHHHHTCTT---TTCCSSEEEEEEECHHHHTTSSCCCBCCCCCCTTSCCTTTCCCCCTTTCG
T ss_pred HHHHHCCCCCCCCCCHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCH
T ss_conf 666306876767779999999736566---89788678742567776677776478888858888888999988566532
Q ss_pred CCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 99989899999999998637406776
Q 000819 260 SSPVCSSTAPPPHKSSSCSVKMGSLN 285 (1268)
Q Consensus 260 ~~~sC~~~~~~~~~~~~c~~~~~~~~ 285 (1268)
+ |||.+|++|+++.+ |+|++++
T Consensus 242 ~--sCp~~p~~p~~~~p--~~I~gld 263 (265)
T 3qnt_A 242 A--SCPAIARPQALDST--FYLGQMP 263 (265)
T ss_dssp G--GCCC-------------------
T ss_pred H--HCCCCCCCCCCCCC--CEEEEEE
T ss_conf 2--26999989899997--1787552
No 2
>3gkj_A Niemann-PICK C1 protein; oxysterol, cholesterol, cholesterol transfer, disease mutati endosome, glycoprotein, lysosome, membrane, transmembrane; HET: NAG HC3; 1.60A {Homo sapiens} PDB: 3gkh_A* 3gki_A*
Probab=1.00 E-value=1 Score=531.04 Aligned_cols=214 Identities=35% Similarity=0.700 Sum_probs=195.6
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCC---CCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 7670563457999899845689999999999256789983198998---9988998889999999986421103992589
Q 000819 50 EEFCAMYDICGARSDRKVLNCPYNIPSVKPDDLLSSKVQSLCPTIT---GNVCCTEDQFDTLRTQVQQAIPFLVGCPACL 126 (1268)
Q Consensus 50 ~~~C~~~g~C~~~~~~~~~~C~~~~~~~~~~~~~~~~l~~~Cp~~~---~~~CC~~~Q~~~l~~~~~~~~~~~~~CpaC~ 126 (1268)
.++|+|||+||++++++++||+||+||++++++++++|+++||+++ +.+|||++|+++|++||++++++|+|||||+
T Consensus 2 ~~~C~~yg~Cg~~~~~~~l~C~~~~~a~~~~~~~~~~L~~~Cp~~~~~~~~~CC~~~Ql~~L~~nl~~a~~il~rCPaC~ 81 (232)
T 3gkj_A 2 AQSCVWYGECGIAYGDKRYNCEYSGPPKPLPKDGYDLVQELCPGFFFGQVSLCCDVRQLQTLKDNLQLPLQFLSRCPSCF 81 (232)
T ss_dssp -CCCSEEEEEEEEETTEEEEEECCSCCEECCGGGHHHHHHHCGGGCSTTCEESCCHHHHHHHHHTTHHHHHHHTTCHHHH
T ss_pred CCCCEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 97205657658889996525999986878898999999986918446888877999999999998887887607682799
Q ss_pred HHHHHHCCCCCCCCCCCCCEEEEEECC----C--CCCEEEEEEEEEECCHHCHHHHHCCCCCCCCCCCHHHHHHCCC-CC
Q ss_conf 348631103445878886438996112----4--8870179999997400104885213258667778257651379-98
Q 000819 127 RNFLNLFCELTCSPNQSLFINVTSVSK----V--SNNLTVDGIDYYITDTFGQGLYESCKDVKFGTMNTRALDFIGG-GA 199 (1268)
Q Consensus 127 ~Nf~~~~C~~tCsP~Qs~F~~v~~~~~----~--~~~~~V~~~~~~v~~~~~~~~y~SCk~v~~~~~~~~am~~~gg-~a 199 (1268)
+||++|||+|||||+||+||+||++.+ . +++..|+|++|||+++||+++|||||||+||+||++||++||| ||
T Consensus 82 ~Nf~~l~C~~TCSP~QS~Fl~vt~t~~~~d~~~~~~~~~V~ev~y~v~~~fa~~~YdSCkdV~~p~t~~~Am~l~CG~ga 161 (232)
T 3gkj_A 82 YNLLNLFCELTCSPRQSQFLQVTATEDYVDPVTNQTKTNVKELQYYVGQSFANAMYNACRDVEAPSSNDKALGLLCGKDA 161 (232)
T ss_dssp HHHHHHHHHHHHCTTHHHHEEEEEEEEEECTTTCCEEEEEEEEEEEECHHHHHHHHHHHTTCBCTTSSSBTHHHHSSSCT
T ss_pred HHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCC
T ss_conf 99999764877897602626368513355655667765389999998778877776653075345566346776437787
Q ss_pred C--CHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCC
Q ss_conf 7--889899862014789999996158842799999885448888768799----99885566799999898999
Q 000819 200 Q--NFKDWFAFIGRRAAANLPGSPYTIKFWPSAPELSGMIPMNVSAYSCAD----GSLGCSCGDCTSSPVCSSTA 268 (1268)
Q Consensus 200 ~--~~~~~l~flG~~~~~~~~~sPf~inf~~~~~~~~~~~~~~~~~~~C~~----~~~~CsC~dC~~~~sC~~~~ 268 (1268)
+ ||++||+|||+++ ||+|||||||++++...+||+|||..+++||+ +.++|||+||++ |||.+|
T Consensus 162 ~~C~~~~wl~flG~~~---ng~sPfqInf~~~~~~~~g~~p~n~~~~~C~e~~~~~~~~CSC~DC~~--sCp~~p 231 (232)
T 3gkj_A 162 DACQATNWIEYMFNKD---NGQAPFTITPVFSDFPVHGMEPMNNATKGCDESVDEVTAPCSCQDCSI--VCGPKP 231 (232)
T ss_dssp TTCCHHHHHHHHTCGG---GSSSSSEEEEEECSSCBTTBCCBCCCCCCTTSCSBTTBCCCCGGGCGG--GC----
T ss_pred CCCCHHHHHHHHCCCC---CCCCCEEEEEECCCCCCCCCEECCCCCCCCCCCCCCCCCCEECCCCHH--HCCCCC
T ss_conf 8889999999726566---897985777541688876565898888677888789999877765432--358997
No 3
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=276.86 Aligned_cols=584 Identities=13% Similarity=0.086 Sum_probs=338.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869997461029999986200015899999999999999871788887533213320024588999999999999998
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 608 ~~~l~i~f~~e~sl~del~~~s~~d~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~~ 687 (1268)
++++++.+.++.+ +.+++....-...+.++.+++++++.+.+++++ .++..++.+.+++++++|++
T Consensus 318 p~g~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~lv~lvl~~~~~s~~------------~~li~~~~ip~s~~~~~~~l 383 (1052)
T 2v50_A 318 PQGMKVVYPYDTT--PVVSASIHEVVKTLGEAILLVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFGVL 383 (1052)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 9981999971526--999999999999999999999999999985179------------99999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 7506521013466887776430224411378999974--1799999999999985224999999999999884035680-
Q 000819 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (1268)
Q Consensus 688 ~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~--~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~- 764 (1268)
.++|++++. ++.+...+++|++|||.+|+++++++. .++.+..+++.++.++.+.++++|++|++++|+.+.+++.
T Consensus 384 ~~~g~~ln~-~s~~gl~~~iGi~vd~aI~~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pil~t~ltt~~~f~pl~~~~~~ 462 (1052)
T 2v50_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGS 462 (1052)
T ss_dssp HHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTSSTTHHHHHHHHHTTHHHHTCCHH
T ss_pred HHHCCCHHH-HHHHHHHHHHHHHCCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 996787789-9999999997755056599845999999865999899999999999999999999999999999985571
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCC---C-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf --68999999999999999999999999999773110003-686---4-2321236888768778766553204899999
Q 000819 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAED-KRV---D-CIPCLKLSSSYADSDKGIGQRKPGLLARYMK 837 (1268)
Q Consensus 765 --p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~~-~r~---d-~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~k 837 (1268)
+.++.||+..++|+++.+++.+++.|+++.+..++... .+. . ..... .... ....+....++...++
T Consensus 463 ~g~~~~~~~~~~~~gl~~s~~~~l~l~P~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~y~~~l~~~l~ 536 (1052)
T 2v50_A 463 TGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWF--NRMF----LSTTHGYERGVASILK 536 (1052)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CHHHH--HHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH--HHHH----HHHHHHHHHHHHHHHH
T ss_conf 778999999999999999999999999999998645676643211210145677--7899----9999999999999985
Q ss_pred -----------------HHHHCCCCCCCCC---------CCCCCCCHHH---HHHHHHHHHCCCCCC--EEEEEE--CCC
Q ss_conf -----------------8555035687544---------3468986032---478998621168998--899995--379
Q 000819 838 -----------------ALCTRIEPGLEQK---------IVLPRDSYLQ---GYFNNISEHLRIGPP--LYFVVK--NYN 884 (1268)
Q Consensus 838 -----------------~~~~~I~~gld~~---------~~lP~dS~l~---~yf~~~~~~l~~g~p--vy~Vv~--~~d 884 (1268)
++.+++..++.+. ..+|.++.+. +..+.+++++...|. +.-|.. +..
T Consensus 537 ~~~~~l~~~~~l~~~~~~~~~~l~~~f~P~~d~~~~~v~~~~p~g~s~~~t~~~~~~ie~~l~~~p~~~V~~v~s~~G~~ 616 (1052)
T 2v50_A 537 HRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFN 616 (1052)
T ss_dssp HCSSHHHHHHHHHHHHHHHHHTSCBCSSCCCCTTEEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTTEEEEEEEESCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCC
T ss_conf 57999999999999999999977972288888877999998399999999999999999999848876079999982677
Q ss_pred --CCCHHHHHHHHHCCCC-C-------CCCHHHHHHHHH-CCCCCCCC--CCCC--------C----------CCCHHH-
Q ss_conf --9955685331202444-6-------961179999983-02789864--4588--------7----------780898-
Q 000819 885 --YSSESRQTNQLCSISQ-C-------DSNSLLNEISRA-SLIPQSSY--IAKP--------A----------ASWLDD- 932 (1268)
Q Consensus 885 --~~~~~~~q~~~c~~~~-c-------~~~sl~~~i~~~-~~~~~~s~--i~~p--------~----------~sWldd- 932 (1268)
...+...+ ..-.... - +...+.+++++. ...|+... ...| . ..-++.
T Consensus 617 ~~~~~~~~~~-i~v~l~~~~~r~~~~~~~~~i~~~l~~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~i~~~~g~d~~~L 695 (1052)
T 2v50_A 617 FAGRGQSSGM-AFIMLKPWEERPGGENSVFELAKRAQMHFFSFKDAMVFAFAPPSVLELGNATGFDLFLQDQAGVGHEVL 695 (1052)
T ss_dssp SSCCSTTEEE-EEEEECCTTSCCSSTTSHHHHHHHHHHHSSSCSSSEEEEECCCSCC-----CCCCEEEEECSSSCHHHH
T ss_pred CCCCCCCEEE-EEEEECCHHHCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHH
T ss_conf 7889975279-999972678656645789999999999862079847998337654577888865899997899999999
Q ss_pred ------HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCHHHHHHHHHH
Q ss_conf ------9985155655543446899878999999999999988788885567875554587--67899995479963799
Q 000819 933 ------FLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSD--LLKDRPSTIQFKEKLPW 1004 (1268)
Q Consensus 933 ------f~~~l~~~~~~cc~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~--~~~~~P~~~~F~~~L~~ 1004 (1268)
....++.. .+.-.... ++-... + + -.--. +++ ...|. +.++..+.+..
T Consensus 696 ~~~a~~l~~~l~~~-~gv~~v~~--~~~~~~-p--------~----------~~i~i-d~~~a~~~Gl-s~~~i~~~l~~ 751 (1052)
T 2v50_A 696 LQARNKFLMLAAQN-PALQRVRP--NGMSDE-P--------Q----------YKLEI-DDEKASALGV-SLADINSTVSI 751 (1052)
T ss_dssp HHHHHHHHHHTTSC-TTEEEEEE--SSCCCE-E--------C----------CBCEE-CHHHHTTTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC-CCEEECCC--CCCCCC-E--------E----------EEEEE-CHHHHHHCCC-CHHHHHHHHHH
T ss_conf 99999999999609-99274246--666797-0--------5----------99998-8999988699-99999999999
Q ss_pred HHHCCCCCCCCCCCCCCC----------CCC----------------C---------------CCCCCCCCEEEEEEEEE
Q ss_conf 882089721017998875----------442----------------1---------------13588886179999999
Q 000819 1005 FLNALPSASCAKGGHGAY----------TNS----------------V---------------DLKGYENGIVQASSFRT 1043 (1268)
Q Consensus 1005 fl~~~p~~~c~~gg~~~y----------~~~----------------v---------------~~~~~~~~~I~as~f~~ 1043 (1268)
.+...+......++. .| ... + .+..++..+. .....
T Consensus 752 ~~~g~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~VpL~~va~i~~~~~p~~i~r~n~~~~--i~V~~ 828 (1052)
T 2v50_A 752 AWGSSYVNDFIDRGR-VKRVYLQGRPDARMNPDDLSKWYVRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPA--MEILG 828 (1052)
T ss_dssp HHSCEEEEEEEETTE-EEEEEEEECGGGSSSGGGGTTCEEECSSSCEEEGGGGEECCCCEECSEECBCSSSBE--EEEEE
T ss_pred HHCCCEEEEEEECCE-EEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEEEECCCEEE--EEEEE
T ss_conf 958922149997891-999999968466469998805724889998999537179999458861896088068--99999
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 81256733139999999999998500147842400321330057899999989898999999999999997312458999
Q 000819 1044 YHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAI 1123 (1268)
Q Consensus 1044 ~~t~l~s~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~vf~eq~~~i~~~~~~~l~~al~~vfiv~~ll~~s~~~~li 1123 (1268)
...+-.+..+..+.+ ++..+++ +.|+.+...|.. ++......+....+.+++++|++++++.++|++.+++
T Consensus 829 ~~~~~~~~~~~~~~i---~~~~~~l--p~g~~~~~~G~~----~~~~~~~~~~~~~~~~a~~~i~l~l~~~f~s~~~~l~ 899 (1052)
T 2v50_A 829 EPAPGLSSGDAMAAV---EEIVKQL--PKGVGYSWTGLS----YEERLSGSQAPALYALSLLVVFLCLAALYESWSIPFS 899 (1052)
T ss_dssp EECTTCCSCTTTTTH---HHHGGGS--CTTEEEEECTHH----HHTTTTCCCSHHHHHHHHHHHHHHHHHHTTCSSTTHH
T ss_pred EECCCCCHHHHHHHH---HHHHHHC--CCCCEEEECCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 847998889999999---9998638--998389955648----9999999879999999999999999999804688999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCEEEEEHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999852545147899999755035011044221344148---999999999999977999999989
Q 000819 1124 ILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVSS---GDKNQRMKEALGTMGASVFSGITL 1200 (1268)
Q Consensus 1124 ~~~~i~~~~i~~~G~M~l~gi~Ln~vs~v~l~iaiGlsVDf~iHi~~~f~~~~---~~~~~ri~~al~~~G~~V~~g~~l 1200 (1268)
+++++++.+++.++.|+++|+++|..+++.+++.+|++|||+||+++++.+.. .+..+++.+|..+.++||+.++ +
T Consensus 900 il~~ip~~~~g~~~~~~~~g~~l~~~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~-~ 978 (1052)
T 2v50_A 900 VMLVVPLGVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTS-L 978 (1052)
T ss_dssp HHTHHHHHHTTHHHHHHHTTCCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_conf 999988999999999999779702899999999999977275999543889987699989999999887077799999-9
Q ss_pred HHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88888876401462---2489999999999999999999999998986209997
Q 000819 1201 TKLVGVIVLCFSRT---EVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1201 T~~~Gi~vL~fs~~---~i~~~f~f~~~~~~v~~~~~~~Li~LPvlLs~~gp~~ 1251 (1268)
|+++|+++|+|+.+ ++.+-+ ....+..++++.+.+|+++|+++.++++..
T Consensus 979 tt~~g~~pl~~~~~~g~~~~~~~-~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~~ 1031 (1052)
T 2v50_A 979 AFILGVVPLAISTGAGSGSQHAI-GTGVIGGMVTATVLAIFWVPLFYVAVSTLF 1031 (1052)
T ss_dssp HHHTTSHHHHTCCSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHHCCCCCHHHHCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999985379872654245-999999999999999999999999998610
No 4
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=276.14 Aligned_cols=590 Identities=13% Similarity=0.102 Sum_probs=340.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869997461029999986200015899999999999999871788887533213320024588999999999999998
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 608 ~~~l~i~f~~e~sl~del~~~s~~d~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~~ 687 (1268)
++++++.+.++.+ +..++....-...+.++.+++++++.+.+++++ .++..++.+.++++++++++
T Consensus 318 p~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~~------------~~li~~~~ip~~~~~~~~~l 383 (1057)
T 4dx5_A 318 PSGLKIVYPYDTT--PFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR------------ATLIPTIAVPVVLLGTFAVL 383 (1057)
T ss_dssp CTTEEEEEEEESH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEECCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 9981999970655--999999999999999999999999999986069------------99999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHH-CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
Q ss_conf 7506521013466887776430224411378999974-17-9999999999998522499999999999988403568--
Q 000819 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QL-ELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP-- 763 (1268)
Q Consensus 688 ~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~-~~-~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~-- 763 (1268)
.++|.+++. ++.+...+++|++|||.+|++.++++. ++ +.+..+++.++.++.+.++++|++|++++|+.+.+++
T Consensus 384 ~~~g~~ln~-~sl~gl~~~iGi~vd~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~~~g~ 462 (1057)
T 4dx5_A 384 AAFGFSINT-LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGS 462 (1057)
T ss_dssp HHTTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGGCCHH
T ss_pred HHHCCCHHH-HHHHHHHHHEECCCCCEEEEHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 995776899-9999999974000356488589999999865999899999999999999999999999999999971672
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -0689999999999999999999999999997731100036864-----2321236888768778766553204899999
Q 000819 764 -MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVD-----CIPCLKLSSSYADSDKGIGQRKPGLLARYMK 837 (1268)
Q Consensus 764 -~p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~~~r~d-----~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~k 837 (1268)
.+.++.||+..++|+++++++.+++.|+++.+..++....+.. ...+... .. ....+....++.+.++
T Consensus 463 ~~~~~~~~a~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~y~~~l~~~lr 536 (1057)
T 4dx5_A 463 TGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNR---MF---EKSTHHYTDSVGGILR 536 (1057)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTCCSTTCCSHHHHHHH---HH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH---HH---HHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999999999999864566654443321057787878---99---9999999999999984
Q ss_pred -----------------HHHHCCCCCCCC---------CCCCCCCCHHHH---HHHHHHHHCC--CCCCEEEEEE--CCC
Q ss_conf -----------------855503568754---------434689860324---7899862116--8998899995--379
Q 000819 838 -----------------ALCTRIEPGLEQ---------KIVLPRDSYLQG---YFNNISEHLR--IGPPLYFVVK--NYN 884 (1268)
Q Consensus 838 -----------------~~~~~I~~gld~---------~~~lP~dS~l~~---yf~~~~~~l~--~g~pvy~Vv~--~~d 884 (1268)
++.+++..++-+ ...+|.++.+.+ ..+.+++.+. ..|.+.-|.. +.+
T Consensus 537 ~~~~~~~~~~~~l~~~~~~~~~l~~~f~P~~d~~~i~v~v~~p~gtsle~t~~~~~~ie~~l~~~~~p~V~~v~s~~G~~ 616 (1057)
T 4dx5_A 537 STGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFG 616 (1057)
T ss_dssp SCTHHHHHHHHHHHHHHHHHHHSCBCSSCCCCCSEEEEEEECCTTCCHHHHHHHHHHHHHHHHHHSTTTEEEEEEEESCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCC
T ss_conf 37999999999999999999967961588888887999998699999999999999999998645898717999996456
Q ss_pred CCCHHHHHHHH-HCCC--------CCCCCHHHHHHHHH-CCCCCCCCC-CC-C------------------CCCCHH---
Q ss_conf 99556853312-0244--------46961179999983-027898644-58-8------------------778089---
Q 000819 885 YSSESRQTNQL-CSIS--------QCDSNSLLNEISRA-SLIPQSSYI-AK-P------------------AASWLD--- 931 (1268)
Q Consensus 885 ~~~~~~~q~~~-c~~~--------~c~~~sl~~~i~~~-~~~~~~s~i-~~-p------------------~~sWld--- 931 (1268)
..........+ -... .-+...+.+++.+. ...|+.... .. | ...-++
T Consensus 617 ~~~~~~n~~~i~V~L~~~~~r~~~~~s~~~i~~~lr~~l~~~p~~~~~~~~~~~~~~~g~~~~~~i~l~~~~g~d~~~L~ 696 (1057)
T 4dx5_A 617 FAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLT 696 (1057)
T ss_dssp TTCCCTTEEEEEEEECCGGGSCSGGGSHHHHHHHHHHHHTTSTTCEEEEECCCSCGGGCCSSEEEEEEEECSSCCHHHHH
T ss_pred CCCCCCCEEEEEEEEECHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCHHHHH
T ss_conf 78899744899999716887677679999999999998720898089973377656778888856999957898999999
Q ss_pred ----HHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHH
Q ss_conf ----89985155655543-4468998789999999999999887888855678755545-87678999954799637998
Q 000819 932 ----DFLVWISPEAFGCC-RKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHH-SDLLKDRPSTIQFKEKLPWF 1005 (1268)
Q Consensus 932 ----df~~~l~~~~~~cc-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~-~~~~~~~P~~~~F~~~L~~f 1005 (1268)
+..+.+... ..-- . ...++-. ..+ +-..-... .....+.. .++..+.+...
T Consensus 697 ~~a~~l~~~l~~~-~gv~~~--v~~~~~~--~~~-----------------~l~i~id~~~a~~~Gls-~~~v~~~l~~~ 753 (1057)
T 4dx5_A 697 QARNQLLAEAAKH-PDMLTS--VRPNGLE--DTP-----------------QFKIDIDQEKAQALGVS-INDINTTLGAA 753 (1057)
T ss_dssp HHHHHHHHHHTTC-TTTEEE--EEESSCC--CEE-----------------EEEEEECHHHHHHHTCC-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCC-CCCEEC--CCCCCCC--CCC-----------------EEEEEECHHHHHHCCCC-HHHHHHHHHHH
T ss_conf 9999999999709-992541--6546668--971-----------------49999889999876999-99999999999
Q ss_pred HHCCCCCCCCCCCCCCCC----------CCC------CCCCCCC-----------------CEE------EEEEEEEEEC
Q ss_conf 820897210179988754----------421------1358888-----------------617------9999999812
Q 000819 1006 LNALPSASCAKGGHGAYT----------NSV------DLKGYEN-----------------GIV------QASSFRTYHT 1046 (1268)
Q Consensus 1006 l~~~p~~~c~~gg~~~y~----------~~v------~~~~~~~-----------------~~I------~as~f~~~~t 1046 (1268)
+...+......|+. .|. .+. .....+. ..| .+........
T Consensus 754 ~~g~~~~~~~~~~~-~~~v~v~~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i~~~~~~~~v~v~~~~~ 832 (1057)
T 4dx5_A 754 WGGSYVNDFIDRGR-VKKVYVMSEAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAA 832 (1057)
T ss_dssp HHCEEEEEEEETTE-EEEEEEEECGGGSSSGGGGGGCEEECTTSCEEEGGGTEEEEEEEECSEEEEETTEEEEEEEEEEC
T ss_pred HCCCEEEEEEECCE-EEEEEEECCHHHCCCHHHHCCEEEECCCCCEEEHHHCEEEEEECCCCEEEEECCCEEEEEEEECC
T ss_conf 58925379966998-99999845943449999870229789999899954718999835886389737918999999748
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56733139999999999998500147842400321330057899999989898999999999999997312458999999
Q 000819 1047 PLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILL 1126 (1268)
Q Consensus 1047 ~l~s~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~~vf~eq~~~i~~~~~~~l~~al~~vfiv~~ll~~s~~~~li~~~ 1126 (1268)
+-.+.. ++.+.++++.+.+ +.|+++...|. .++......+....+.+++++|++++++.++|++.++++++
T Consensus 833 ~~~~~~---~~~~~~~~~~~~l--p~g~~~~~~G~----~~~~~~~~~~~~~~~~~a~~~i~l~L~~~f~s~~~~l~~l~ 903 (1057)
T 4dx5_A 833 PGKSTG---EAMELMEQLASKL--PTGVGYDWTGM----SYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVML 903 (1057)
T ss_dssp TTCCHH---HHHHHHHHHHHTS--CTTEEEEECHH----HHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTCSSTHHHHHT
T ss_pred CCCCHH---HHHHHHHHHHHHC--CCCCEEEECCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999989---9999999877429--89877985572----89999999889999999999999999999962898999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCEEEEEHHHHCC-C---CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999985254514789999975503501104422134414-8---99999999999997799999998988
Q 000819 1127 VLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS-S---GDKNQRMKEALGTMGASVFSGITLTK 1202 (1268)
Q Consensus 1127 ~i~~~~i~~~G~M~l~gi~Ln~vs~v~l~iaiGlsVDf~iHi~~~f~~~-~---~~~~~ri~~al~~~G~~V~~g~~lT~ 1202 (1268)
++++.+++.+|.|+++|+++|..+++.+++.+|++|||+||+..++.+. . .+..+++.+|..+.++||+.++ +|+
T Consensus 904 ~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~-ltt 982 (1057)
T 4dx5_A 904 VVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTS-LAF 982 (1057)
T ss_dssp THHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9889999999999997798519999999999999871708983597699887599999999999988676899999-999
Q ss_pred HHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88887640146---2248999999999999999999999999898620999732
Q 000819 1203 LVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1203 ~~Gi~vL~fs~---~~i~~~f~f~~~~~~v~~~~~~~Li~LPvlLs~~gp~~~~ 1253 (1268)
++|+++|+|+. .+.++-+. ...+..++++.+.+|+++|+++.+++++...
T Consensus 983 ~~g~~pl~~~~g~g~~~~~~~g-~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~~ 1035 (1057)
T 4dx5_A 983 ILGVMPLVISTGAGSGAQNAVG-TGVMGGMVTATVLAIFFVPVFFVVVRRRFSR 1035 (1057)
T ss_dssp HHHTHHHHTCCSTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHCCCCHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999984589626651549-9999999999999999999999999874211
No 5
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=268.94 Aligned_cols=593 Identities=10% Similarity=0.057 Sum_probs=330.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99869997461029999986200015899999999999999871788887533213320024588999999999999998
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFF 687 (1268)
Q Consensus 608 ~~~l~i~f~~e~sl~del~~~s~~d~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~~ 687 (1268)
++++++.+.++.+- .+++....-...+.++.+++++++.+.++++ ..++..++.+.++++++++++
T Consensus 323 p~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~lv~~vl~~~~~s~------------~~~li~~~~ip~~~~~~~~~l 388 (1054)
T 3ne5_A 323 PEGVEIVTTYDRSQ--LIDRAIDNLSGKLLEEFIVVAVVCALFLWHV------------RSALVAIISLPLGLCIAFIVM 388 (1054)
T ss_dssp CTTEEEEEEEETHH--HHHHHHHHHHHHHHHHHHHHHHHTTTSSCSH------------HHHHHHHTTTHHHHHHHHHHH
T ss_pred CCCEEEEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH------------HHHHHHHHHHHHHHHHHHHHH
T ss_conf 99839999854659--9999999999999999999999999984555------------889999999999999999999
Q ss_pred HHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC-C-----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 75065210134668877764302244113789999741-7-----------99999999999985224999999999999
Q 000819 688 SAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ-L-----------ELPLETRISNALVEVGPSITLASLSEVLA 755 (1268)
Q Consensus 688 ~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~~-~-----------~~~~~~~i~~al~~~g~si~~tslt~~~~ 755 (1268)
.++|.+++. ++.+...+++|++|||.++++.++++.. + +.+..+++.++.++.++++++|++|++++
T Consensus 389 ~~~g~~ln~-~sl~gl~l~iGi~vd~aIvvve~~~~~~~~~~~~~~~~~~~g~~~~~a~~~a~~~~~~~i~~s~ltt~~~ 467 (1054)
T 3ne5_A 389 HFQGLNANI-MSLGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLIITLS 467 (1054)
T ss_dssp HHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSCSSCCCTTHHHHHHHTTTTTHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHH-HHHHHHHHHHHHEECCCEEEEEHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 981877889-9999999985620317398731899998611344444444567889999999999999999999999999
Q ss_pred HHHHCCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 88403568---0689999999999999999999999999997731100036864-2321236888768778766553204
Q 000819 756 FAVGSFIP---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVD-CIPCLKLSSSYADSDKGIGQRKPGL 831 (1268)
Q Consensus 756 F~~~~~s~---~p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~~~r~d-~~~c~~~~~~~~~~~~~~~~~~~~~ 831 (1268)
|+.+.+++ .+..+.||+..++|+++++++.+++.|+++.+..++....+.+ .+.. +....+..... ...+.+..
T Consensus 468 f~pl~~~~g~~~~~~~~~~~~~~~gl~~s~~~~l~~~P~l~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~~-~~~~~~~~ 545 (1054)
T 3ne5_A 468 FIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPLNR-FLIRVYHPLLL-KVLHWPKT 545 (1054)
T ss_dssp TGGGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHC------------CHH-HHHHHHHHHHH-HHTSSTHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH-HHHHHHHHHHH-HHHHHHHH
T ss_conf 99888706548899998899999999999999999999999997136665322337899-99999999999-99852799
Q ss_pred -HHHHH------HHHHHCCCCCCCC---------CCCCCCCCHHH---HHHHHHHHHCCCCCCEEEEEE--CC-C-CCCH
Q ss_conf -89999------9855503568754---------43468986032---478998621168998899995--37-9-9955
Q 000819 832 -LARYM------KALCTRIEPGLEQ---------KIVLPRDSYLQ---GYFNNISEHLRIGPPLYFVVK--NY-N-YSSE 888 (1268)
Q Consensus 832 -l~~~~------k~~~~~I~~gld~---------~~~lP~dS~l~---~yf~~~~~~l~~g~pvy~Vv~--~~-d-~~~~ 888 (1268)
+.-.+ .++.+++..++-+ ....|+++.+. +..+.+++.+..-|.+.-|.. +. + ..++
T Consensus 546 ~~~~~~~~l~~~~~~~~~l~~~f~P~~d~g~~~v~~~~p~Gtsle~t~~~~~~ie~~l~~~p~V~~v~s~~G~~~~~~~~ 625 (1054)
T 3ne5_A 546 TLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGKAETATDS 625 (1054)
T ss_dssp HHHHHHHHHHHTHHHHTTCCBCSSCCCCCSEEEECCBCCTTCCHHHHHHHHHHHHHHHHTSTTEEEEEEEEECCSSTTCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
T ss_conf 99999999999999997679458988788759999943999999999999999999985198918999971577777888
Q ss_pred HH-HHHH-HHCC-------CCCCCCHHHHHHHHHCCCCCCCCC------------------------CCCCC----CCHH
Q ss_conf 68-5331-2024-------446961179999983027898644------------------------58877----8089
Q 000819 889 SR-QTNQ-LCSI-------SQCDSNSLLNEISRASLIPQSSYI------------------------AKPAA----SWLD 931 (1268)
Q Consensus 889 ~~-~q~~-~c~~-------~~c~~~sl~~~i~~~~~~~~~s~i------------------------~~p~~----sWld 931 (1268)
.. .... .-.. .+-+.+.+.+++++..+.|+.... ..+.. ..-+
T Consensus 626 ~~~~~~~~~v~l~~~~~~~~~~~~~~l~~~lr~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~i~i~l~G~d~~~L~~~a~ 705 (1054)
T 3ne5_A 626 APLEMVETTIQLKPQEQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIGIKVSGTVLADIDAMAE 705 (1054)
T ss_dssp CCTTCBCEEEEECCTTTSCSSCCHHHHHHHHHHHSCCTTCBCCEECHHHHHHHHHHTSCSSSEEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEEEEECCHHHCCCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
T ss_conf 88643899999634565355689999999999971899843420355311100036788876799996889999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 899851556555434468998789999999999999887888855678755545-8767899995479963799882089
Q 000819 932 DFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHH-SDLLKDRPSTIQFKEKLPWFLNALP 1010 (1268)
Q Consensus 932 df~~~l~~~~~~cc~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~-~~~~~~~P~~~~F~~~L~~fl~~~p 1010 (1268)
+....+... ...-.... ++-.. .+ +-.--... .....+.. .++..+.+...+...+
T Consensus 706 ~l~~~l~~~-~gv~~v~~--~~~~~--~~-----------------~l~i~id~~~a~~~Gls-~~~v~~~l~~~~~g~~ 762 (1054)
T 3ne5_A 706 QIEEVARTV-PGVASALA--ERLEG--GR-----------------YINVEINREKAARYGMT-VADVQLFVTSAVGGAM 762 (1054)
T ss_dssp HHHHHHHHS-TTCSEEEE--CCSSC--EE-----------------EEEEEECHHHHHTTTCC-HHHHHHHHHTTTSCCE
T ss_pred HHHHHHHCC-CCCEEEEC--CCCCC--CE-----------------EEEEEECHHHHHHCCCC-HHHHHHHHHHHHCCCE
T ss_conf 999998569-99267344--66679--80-----------------59999899999884989-9999999999838951
Q ss_pred CCCCCCCCCCCCC----------C----------------CCCCCC-------CCCCEEE------EEEEEEEECCCCCH
Q ss_conf 7210179988754----------4----------------211358-------8886179------99999981256733
Q 000819 1011 SASCAKGGHGAYT----------N----------------SVDLKG-------YENGIVQ------ASSFRTYHTPLNRQ 1051 (1268)
Q Consensus 1011 ~~~c~~gg~~~y~----------~----------------~v~~~~-------~~~~~I~------as~f~~~~t~l~s~ 1051 (1268)
-..-..|++ .|. . .+.+.. .....|. +....... . .
T Consensus 763 ~~~~~~~~~-~~~v~vr~~~~~r~~~~~l~~l~v~~~~G~~v~L~~va~~~~~~~~~~i~~~~~~~~~~v~~~~---~-~ 837 (1054)
T 3ne5_A 763 VGETVEGIA-RYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTSWIYIDA---R-D 837 (1054)
T ss_dssp EEEEEETTE-EEEEEEECCGGGSSSHHHHTTCEEECTTCCEEEGGGTEEEEEEEECSCEEEETTEEEEEEEEEC---C-S
T ss_pred EEEEEECCE-EEEEEEEECHHHCCCHHHHHCCEEECCCCCEEEHHHCEEEEEECCCCEEEEECCEEEEEEEEEE---C-C
T ss_conf 058987998-9999999673544898987122768899989995480899983587618987791799999981---8-9
Q ss_pred HHHHHHHHHHHHHHH-HHCCCCCCEEEECCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 139999999999998-5001478424003213300578999999898989999999999999973124589999999999
Q 000819 1052 IDYVNSMRAAREFSS-RVSDSLQMEIFPYSVFYMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTM 1130 (1268)
Q Consensus 1052 ~d~~~~~~~~~~i~~-~~~~~~~~~v~~~~~~~vf~eq~~~i~~~~~~~l~~al~~vfiv~~ll~~s~~~~li~~~~i~~ 1130 (1268)
.+..+..+++++..+ +...+.|+.+...| .+++...........+++++++|++++++.++|++.++++++++++
T Consensus 838 ~~~~~~~~~i~~~~~~~~~~p~g~~~~~~G----~~~~~~~~~~~~~~~~~~al~li~l~L~~~f~S~~~~l~il~~ip~ 913 (1054)
T 3ne5_A 838 RDMVSVVHDLQKAIAEKVQLKPGTSVAFSG----QFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPF 913 (1054)
T ss_dssp SCHHHHHHHHHHHHHHHCCCCTTCEEEEEE----HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCCHHHHHHHHTTSHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEECC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_conf 998999999999998428998983899674----5899999999999999999999999999998079999999999989
Q ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEECCEEEEEHHHHCC--------------CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999985254514789999975503501104422134414--------------899999999999997799999
Q 000819 1131 IVVDLMGVMAILKIQLNAVSVVNLVMAVGIAVEFCVHITHAFSVS--------------SGDKNQRMKEALGTMGASVFS 1196 (1268)
Q Consensus 1131 ~~i~~~G~M~l~gi~Ln~vs~v~l~iaiGlsVDf~iHi~~~f~~~--------------~~~~~~ri~~al~~~G~~V~~ 1196 (1268)
.+++.+|.|+++|+++|..+++.+++.+|++|||+||+..++.+. ..+..+++.+|..+.++||+.
T Consensus 914 ~~~g~~~~l~l~g~~l~~~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~ 993 (1054)
T 3ne5_A 914 ALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAM 993 (1054)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999879830999999999999999532368999999998643210023558998999999998874748999
Q ss_pred HHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99898888887640146---22489999999999999999999999998986209997
Q 000819 1197 GITLTKLVGVIVLCFSR---TEVFVVYYFQMYLALVLLGFLHGLVFLPVVLSVFGPPS 1251 (1268)
Q Consensus 1197 g~~lT~~~Gi~vL~fs~---~~i~~~f~f~~~~~~v~~~~~~~Li~LPvlLs~~gp~~ 1251 (1268)
++ +|+++|+++|+|+. .++++-+. ...+..++++.+.+|+++|+++.+++.+.
T Consensus 994 t~-ltti~g~~pl~~~~g~g~~~~~~l~-~~~~~Gl~~s~~~tl~v~P~l~~~~~~~~ 1049 (1054)
T 3ne5_A 994 TV-AVIIAGLLPILWGTGAGSEVMSRIA-APMIGGMITAPLLSLFIIPAAYKLMWLHR 1049 (1054)
T ss_dssp HH-HHHHHHHHHHHSCCSTTHHHHHHTT-HHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HH-HHHHHHHHHHHHHCCCCHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99-9999999999962589757755579-99996999999999999999999999734
No 6
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=266.61 Aligned_cols=469 Identities=15% Similarity=0.162 Sum_probs=310.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986999746102999998620001-589999999999999987178888753321332002458899999999999999
Q 000819 608 SKNLTLAFSSESSIEEELKRESTAD-AITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 608 ~~~l~i~f~~e~sl~del~~~s~~d-~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~ 686 (1268)
+.++++.+. +++..++.+.+..+ .....++.+++++++.+.++ + ..++..++.+.+++++++|+
T Consensus 251 P~~~~~~~~--~~vg~~l~~~~~~~~~~a~~i~~~lv~l~l~l~~r-~------------~~~li~~~~l~~~i~~~~~~ 315 (741)
T 3aqp_A 251 PVPLKVAEI--RAIGPTLGQDAIQAGIRSALIGTLAIFLLIFAYYG-P------------HLGLVASLGLLYTSALILGL 315 (741)
T ss_dssp CCCCEEEEE--EEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-H------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEE--ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 886268875--40687899999999999999999999999999981-3------------78999999999999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 87506521013466887776430224411378999974-17999999999999852249999999999998840356806
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1268)
Q Consensus 687 ~~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p 765 (1268)
+.++|.++|+ +..+.+.+++|++|||.+|+++++++. +++.+.++++.+++++++.+|+.+++|++++|+.+.+++.+
T Consensus 316 l~l~g~~l~l-~~i~glil~iGi~VD~~I~i~eri~e~~~~g~~~~~Ai~~~~~~~~~~Il~s~lTt~i~f~~L~~~~~~ 394 (741)
T 3aqp_A 316 LSGLGATLTL-PGIAGLVLTLGAAVDGNVLSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATG 394 (741)
T ss_dssp HHHHCCBCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9998778159-999999999999983420458999999985999999999999999999999999999999999997056
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH--HHHHHCC
Q ss_conf 89999999999999999999999999997731100036864232123688876877876655320489999--9855503
Q 000819 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAEDKRVDCIPCLKLSSSYADSDKGIGQRKPGLLARYM--KALCTRI 843 (1268)
Q Consensus 766 ~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~~~r~d~~~c~~~~~~~~~~~~~~~~~~~~~l~~~~--k~~~~~I 843 (1268)
.+|.||+..++|++++++..+++.|+++.+..+|...++. . ... .... +.+.++...+..-.. -.++..+
T Consensus 395 ~~~~fa~~~~~gi~~s~~~al~~~P~l~~~~~~~~~~~~~-~--~~~--~~~~---~~l~~r~~~~~i~~vl~~~~~~~~ 466 (741)
T 3aqp_A 395 PVRGFAVILAIGVVASVFSNLVFSRHLLERLADRGEIRPP-M--WLV--DPRF---NFMGPARYVTAATLLLAALAAGVV 466 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-C--CCC--CCCC---STTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-C--CCC--CCHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6326999999999999999999999999998416777886-4--210--2020---697540799999999999999998
Q ss_pred -CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf -5687544346898603247899862116899889999537999556853312024446961179999983027898644
Q 000819 844 -EPGLEQKIVLPRDSYLQGYFNNISEHLRIGPPLYFVVKNYNYSSESRQTNQLCSISQCDSNSLLNEISRASLIPQSSYI 922 (1268)
Q Consensus 844 -~~gld~~~~lP~dS~l~~yf~~~~~~l~~g~pvy~Vv~~~d~~~~~~~q~~~c~~~~c~~~sl~~~i~~~~~~~~~s~i 922 (1268)
-.+++. ...|..|.++.+.+++ +. +.+ .+.+.+++. . +
T Consensus 467 ~~~~~~~-----------------~~~f~Gg~~i~v~~~~-~~-~~~---------------~l~~~l~~~------g-~ 505 (741)
T 3aqp_A 467 FAKGFNY-----------------SIDFTGGTAYTLRAEP-NV-EVE---------------TLRRFLEEK------G-F 505 (741)
T ss_dssp HHHTCCC-----------------CHHHHCEEEEEEEECT-TC-CHH---------------HHHHHHHTT------T-S
T ss_pred HHCCCCC-----------------CEECCCCCEEEEEECC-CC-CHH---------------HHHHHHHHC------C-C
T ss_conf 6524775-----------------2262898579999789-99-999---------------999999865------9-9
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 58877808989985155655543446899878999999999999988788885567875554587678999954799637
Q 000819 923 AKPAASWLDDFLVWISPEAFGCCRKFTNGSYCPPDDQPPCCPSGQSSCGSAGVCKDCTTCFHHSDLLKDRPSTIQFKEKL 1002 (1268)
Q Consensus 923 ~~p~~sWlddf~~~l~~~~~~cc~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~~~~~~P~~~~F~~~L 1002 (1268)
|. + +. . -+.+
T Consensus 506 ----------------~~---------~-------~~---------------------------~-------v~~~---- 515 (741)
T 3aqp_A 506 ----------------PG---------K-------EA---------------------------V-------ITQV---- 515 (741)
T ss_dssp ----------------CS---------S-------SC---------------------------E-------EEEC----
T ss_pred ----------------CC---------C-------CH---------------------------H-------HHHC----
T ss_conf ----------------99---------8-------42---------------------------3-------4110----
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCE
Q ss_conf 99882089721017998875442113588886179999999812567331399999999999985001478424003213
Q 000819 1003 PWFLNALPSASCAKGGHGAYTNSVDLKGYENGIVQASSFRTYHTPLNRQIDYVNSMRAAREFSSRVSDSLQMEIFPYSVF 1082 (1268)
Q Consensus 1003 ~~fl~~~p~~~c~~gg~~~y~~~v~~~~~~~~~I~as~f~~~~t~l~s~~d~~~~~~~~~~i~~~~~~~~~~~v~~~~~~ 1082 (1268)
.+ ..+ ++ .++.....+ .+.++..+..+.++ +.+.. .+.++ .
T Consensus 516 ----g~-~~~----~~--------------------~~~~v~~~~-~~~~~~~~l~~~l~---~~~~~-~~~~~-----~ 556 (741)
T 3aqp_A 516 ----QA-PTA----AY--------------------REFLVKLPP-LSDERRLELERLFA---SELKA-TVLAS-----E 556 (741)
T ss_dssp ---------------C--------------------EEEEEEESC-CCHHHHHHHHHHHH---HHSSS-CCCEE-----E
T ss_pred ----CC-CCC----CC--------------------EEEEEEECC-CCHHHHHHHHHHHH---HHCCC-CCEEE-----E
T ss_conf ----67-876----75--------------------589998079-99999999999999---76587-76079-----9
Q ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCEEE
Q ss_conf 30057899999989898999999999999997312458999999999999999999998525451478999997550350
Q 000819 1083 YMYFEQYLDIWRTALINLAIAIGAVFVVCLITTCSFWSSAIILLVLTMIVVDLMGVMAILKIQLNAVSVVNLVMAVGIAV 1162 (1268)
Q Consensus 1083 ~vf~eq~~~i~~~~~~~l~~al~~vfiv~~ll~~s~~~~li~~~~i~~~~i~~~G~M~l~gi~Ln~vs~v~l~iaiGlsV 1162 (1268)
++-.+....+.+.....++++++++++++++.+ |++.+++++++++..++.++|+|+++|+++|..+++.+++.+|++|
T Consensus 557 ~vG~~~~~~~~~~~~~al~lali~i~l~l~~~F-s~~~~l~~l~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~liGisv 635 (741)
T 3aqp_A 557 TVGPAIGEELRRNAVMAVLVGLGLILLYVAFRF-DWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGYSI 635 (741)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 735889999999899999999999999999999-8999899999999999999999999916716999999999999964
Q ss_pred CCEEEEEHHHHCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11044221344148-----9999999999999779999999898888887640146224899999999999999999999
Q 000819 1163 EFCVHITHAFSVSS-----GDKNQRMKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVVYYFQMYLALVLLGFLHGL 1237 (1268)
Q Consensus 1163 Df~iHi~~~f~~~~-----~~~~~ri~~al~~~G~~V~~g~~lT~~~Gi~vL~fs~~~i~~~f~f~~~~~~v~~~~~~~L 1237 (1268)
||+||+.++|+++. .+.++++.+|+++.++|++.++ +|+++|+++|+++..+.++.|.+.+ +..++++.++++
T Consensus 636 d~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Ts-ltt~~g~~~L~~~g~~~~~~~g~~~-~~Gl~~~~~~sl 713 (741)
T 3aqp_A 636 NDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTS-LTTLLPILALLFLGGSVLRDFALAI-FVGIFVGTYSSI 713 (741)
T ss_dssp HHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf 66388449999999744799999999999999999999999-9999999999995458789999999-999999999999
Q ss_pred HHHHHHHHHHCCCCCC
Q ss_conf 9999898620999732
Q 000819 1238 VFLPVVLSVFGPPSRC 1253 (1268)
Q Consensus 1238 i~LPvlLs~~gp~~~~ 1253 (1268)
+++|+++.+++++.+.
T Consensus 714 ~l~Pal~~~~~~~~~~ 729 (741)
T 3aqp_A 714 YVVSALVVAWKNRRKA 729 (741)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHCCCC
T ss_conf 9999999996012345
No 7
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent, transport, cell membrane, transmembrane, membrane protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Probab=1.00 E-value=1 Score=173.94 Aligned_cols=175 Identities=15% Similarity=0.099 Sum_probs=146.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998699974610299999862000158-9999999999999987178888753321332002458899999999999999
Q 000819 608 SKNLTLAFSSESSIEEELKRESTADAI-TIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 608 ~~~l~i~f~~e~sl~del~~~s~~d~~-~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~ 686 (1268)
++++++.+.|+.. +..+. ..++. .+.++.+++++++.+.+++++ ..+..++.+.++++.+++.
T Consensus 851 p~g~~~~~~G~~~---~~~~~-~~~~~~~~~~a~~~i~l~l~~~f~s~~------------~~l~il~~ip~~~~g~~~~ 914 (1052)
T 2v50_A 851 PKGVGYSWTGLSY---EERLS-GSQAPALYALSLLVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALLA 914 (1052)
T ss_dssp CTTEEEEECTHHH---HTTTT-CCCSHHHHHHHHHHHHHHHHHHTTCSS------------TTHHHHTHHHHHHTTHHHH
T ss_pred CCCCEEEECCHHH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHH------------HHHHHHHHHHHHHHHHHHH
T ss_conf 9983899556489---99999-987999999999999999999980468------------8999999988999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 87506521013466887776430224411378999974-1799999999999985224999999999999884035680-
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ-QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPM- 764 (1268)
Q Consensus 687 ~~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~-~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~- 764 (1268)
+.++|.+++. ...+...+++|+++||.+|+++++++. +++.+.++++.++..+.+.+|++|++|+++||+.+++++.
T Consensus 915 ~~~~g~~l~~-~~~~g~~~l~Gi~vd~~I~lv~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~~tt~~g~~pl~~~~~~ 993 (1052)
T 2v50_A 915 TSMRGLSNDV-FFQVGLLTTIGLSAKNAILIVEFAKELHEQGKGIVEAAIEACRMRLRPIVMTSLAFILGVVPLAISTGA 993 (1052)
T ss_dssp HHHTTCCBSH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHTCCST
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHCCEEEEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 9997797028-999999999999772759995438899876999899999998870777999999999999999853798
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf --68999999999999999999999999999773110
Q 000819 765 --PACRVFSMFAALAVLLDFLLQITAFVALIVFDFLR 799 (1268)
Q Consensus 765 --p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r 799 (1268)
+..+.||+..+.|++++.++.+++.|+++.+..++
T Consensus 994 g~~~~~~~~~~~~~Gl~~s~~~~l~~~P~l~~~~~~~ 1030 (1052)
T 2v50_A 994 GSGSQHAIGTGVIGGMVTATVLAIFWVPLFYVAVSTL 1030 (1052)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred CHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7265424599999999999999999999999999861
No 8
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=1.00 E-value=1 Score=167.09 Aligned_cols=178 Identities=15% Similarity=0.095 Sum_probs=148.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 699869997461029999986200015-8999999999999998717888875332133200245889999999999999
Q 000819 607 QSKNLTLAFSSESSIEEELKRESTADA-ITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVG 685 (1268)
Q Consensus 607 ~~~~l~i~f~~e~sl~del~~~s~~d~-~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G 685 (1268)
.++++++.+.++ .++..+ +..++ ..+.++.+++++++.+.+++++ .++..++.+.++++.++|
T Consensus 851 lp~g~~~~~~G~---~~~~~~-~~~~~~~~~~~a~~~i~l~L~~~f~s~~------------~~l~~l~~i~~~~~~~~~ 914 (1057)
T 4dx5_A 851 LPTGVGYDWTGM---SYQERL-SGNQAPSLYAISLIVVFLCLAALYESWS------------IPFSVMLVVPLGVIGALL 914 (1057)
T ss_dssp SCTTEEEEECHH---HHSSSS-CCCCHHHHHHHHHHHHHHHHHHHHTCSS------------THHHHHTTHHHHHHHHHH
T ss_pred CCCCCEEEECCH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
T ss_conf 989877985572---899999-9988999999999999999999996289------------899999998899999999
Q ss_pred HHHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 987506521013466887776430224411378999974--179999999999998522499999999999988403568
Q 000819 686 FFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQ--QLELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIP 763 (1268)
Q Consensus 686 ~~~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~--~~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~ 763 (1268)
.+.++|.+++. ...+...+++|+++||.+++++++++. +++.+.++++.++..+.+.+|++|++|++++|+.+.+++
T Consensus 915 ~l~~~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltt~~g~~pl~~~~ 993 (1057)
T 4dx5_A 915 AATFRGLTNDV-YFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVIST 993 (1057)
T ss_dssp HHHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTCC
T ss_pred HHHHHCCCCCH-HHHHHHHHHHHHHHCCEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99997798519-99999999999987170898359769988759999999999998867689999999999999999845
Q ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---06899999999999999999999999999977311000
Q 000819 764 ---MPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1268)
Q Consensus 764 ---~p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~ 801 (1268)
.+..+.||+..++|+++++++.+++.|+++.+..++..
T Consensus 994 g~g~~~~~~~g~~~~~Gl~~s~~~tl~~~P~l~~~~~~~~~ 1034 (1057)
T 4dx5_A 994 GAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVRRRFS 1034 (1057)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89626651549999999999999999999999999987421
No 9
>3ne5_A Cation efflux system protein CUSA; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3k07_A 3k0i_A 3kso_A 3kss_A 3t53_A 3t51_A 3t56_A 4dop_A 4dnt_A
Probab=1.00 E-value=1 Score=163.47 Aligned_cols=178 Identities=10% Similarity=0.074 Sum_probs=145.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69986999746102999998620001589999999999999987178888753321332002458899999999999999
Q 000819 607 QSKNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGF 686 (1268)
Q Consensus 607 ~~~~l~i~f~~e~sl~del~~~s~~d~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~ 686 (1268)
.++++++.+.++.....+..+ .-...+.++.+++++++.+.++++ ..++..++.+.+++++++|.
T Consensus 857 ~p~g~~~~~~G~~~~~~~~~~---~~~~~~~~al~li~l~L~~~f~S~------------~~~l~il~~ip~~~~g~~~~ 921 (1054)
T 3ne5_A 857 LKPGTSVAFSGQFELLERANH---KLKLMVPMTLMIIFVLLYLAFRRV------------GEALLIISSVPFALVGGIWL 921 (1054)
T ss_dssp CCTTCEEEEEEHHHHHHHHHH---HHHTHHHHHHHHHHHHHHHHTCCH------------HHHHHHHTTSHHHHHHHHHH
T ss_pred CCCCCEEEECCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHHH
T ss_conf 989838996745899999999---999999999999999999998079------------99999999998999999999
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHCC------------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8750652101346688777643022441137899997417------------9999999999998522499999999999
Q 000819 687 FSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQL------------ELPLETRISNALVEVGPSITLASLSEVL 754 (1268)
Q Consensus 687 ~~~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~~~------------~~~~~~~i~~al~~~g~si~~tslt~~~ 754 (1268)
+.++|.+++. ...+...+++|+++||.+++++++++..+ +.+..+++.++..+.+.+|++|++|+++
T Consensus 922 l~l~g~~l~~-~~~~g~i~l~Gi~vd~~I~lv~~~~~~~~~~~~~~~~~~~~g~~~~~Ai~~a~~~~~rpil~t~ltti~ 1000 (1054)
T 3ne5_A 922 LWWMGFHLSV-ATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIA 1000 (1054)
T ss_dssp HHHHTCCBCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHHHHTTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9998798309-999999999999995323689999999986432100235589989999999988747489999999999
Q ss_pred HHHHHCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98840356---80689999999999999999999999999997731100
Q 000819 755 AFAVGSFI---PMPACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRA 800 (1268)
Q Consensus 755 ~F~~~~~s---~~p~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~ 800 (1268)
+|+.++++ +.+..+.||+..+.|+++++++.+++.|+++.+..++.
T Consensus 1001 g~~pl~~~~g~g~~~~~~l~~~~~~Gl~~s~~~tl~v~P~l~~~~~~~~ 1049 (1054)
T 3ne5_A 1001 GLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHR 1049 (1054)
T ss_dssp HHHHHHSCCSTTHHHHHHTTHHHHHHHHHHHHHHHHHTHHHHHHHTTTC
T ss_pred HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999996258975775557999996999999999999999999999734
No 10
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=1.00 E-value=1 Score=161.08 Aligned_cols=175 Identities=16% Similarity=0.283 Sum_probs=142.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 98699974610299999862000158999999999999998717888875332133200245889999999999999987
Q 000819 609 KNLTLAFSSESSIEEELKRESTADAITIVISYLVMFAYISLTLGDTPHLSSFYISSKVLLGLSGVVLVMLSVLGSVGFFS 688 (1268)
Q Consensus 609 ~~l~i~f~~e~sl~del~~~s~~d~~~l~is~llmfiyi~l~l~~~~~~~~~~v~Sk~~lgl~gil~v~~sv~~s~G~~~ 688 (1268)
...++.+.+. ...+++.+ .-...+.++.+++++|+.+.+ + +..++..++.+.+++++++|+++
T Consensus 551 ~~~~~~~vG~-~~~~~~~~---~~~~al~lali~i~l~l~~~F-s------------~~~~l~~l~~l~~~~~~~~g~l~ 613 (741)
T 3aqp_A 551 TVLASETVGP-AIGEELRR---NAVMAVLVGLGLILLYVAFRF-D------------WTFGVASILAVAHDVAIVAGMYS 613 (741)
T ss_dssp CCCEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHS-C------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-H------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7607997358-89999999---899999999999999999999-8------------99989999999999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHCCCCCEEHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
Q ss_conf 5065210134668877764302244113789999741---7999999999999852249999999999998840356806
Q 000819 689 AIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQQ---LELPLETRISNALVEVGPSITLASLSEVLAFAVGSFIPMP 765 (1268)
Q Consensus 689 ~~Gi~~t~i~~~viPfLiL~IGvd~~f~l~~~~~~~~---~~~~~~~~i~~al~~~g~si~~tslt~~~~F~~~~~s~~p 765 (1268)
++|++++. ...+...+++|+++||.+|+++++++.. ++.+.++++.+++.+.+.++++|++|++++|+.+.+++.+
T Consensus 614 l~g~~l~~-~~i~~~l~liGisvd~~I~l~~r~re~~~~~~g~~~~eav~~a~~~~~~~il~Tsltt~~g~~~L~~~g~~ 692 (741)
T 3aqp_A 614 LLGLEFSI-PTIAALLTIVGYSINDSIVVSDRIRENQKLLRHLPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS 692 (741)
T ss_dssp HHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHCCCCH-HHHHHHHHHHHHHHCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 99167169-99999999999964663884499999997447999999999999999999999999999999999995458
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 899999999999999999999999999977311000
Q 000819 766 ACRVFSMFAALAVLLDFLLQITAFVALIVFDFLRAE 801 (1268)
Q Consensus 766 ~vr~F~i~~a~av~~~~l~~lt~~~alL~l~~~r~~ 801 (1268)
.++.||+.+++|++++.+..+++.|+++.+..+|++
T Consensus 693 ~~~~~g~~~~~Gl~~~~~~sl~l~Pal~~~~~~~~~ 728 (741)
T 3aqp_A 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRK 728 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 789999999999999999999999999999601234
Done!