BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000820
(1268 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 654 bits (1688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/359 (85%), Positives = 343/359 (95%)
Query: 887 EDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYAT 946
EDMKGKIRVYCRLRPL EKE KER + S+DEFTVEH WKDDK KQHMYD+VFDG AT
Sbjct: 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNAT 60
Query: 947 QEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKK 1006
Q+DVFEDT+YLVQSAVDGYNVCIFAYGQTGSGKTFTIYG++ NPG+TPRA+SELFRI+KK
Sbjct: 61 QDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKK 120
Query: 1007 ENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEE 1066
++NKFSFSLKAYMVELYQDTLVDLLLP+ KRLKL+IKKDSKGMV VENVTVV IST+EE
Sbjct: 121 DSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEE 180
Query: 1067 IKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERV 1126
+K+IIQRGS+QRHT+GT MNE+SSRSHLI+S++IESTNLQTQ++ARGKLSFVDLAGSERV
Sbjct: 181 LKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERV 240
Query: 1127 KKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLM 1186
KKSGS+GNQLKEAQSINKSLSALGDVISALSSG+QHIPYRNHKLTMLMSDSLGGNAKTLM
Sbjct: 241 KKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLM 300
Query: 1187 FVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQAGKKGD 1245
FVN+SPAESNL+E++NSLTYASRVRSIVNDP+KNVSSKEVARLK+LV+YWKEQAG+KGD
Sbjct: 301 FVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGD 359
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 302/367 (82%), Positives = 344/367 (93%)
Query: 879 RKRYFNTIEDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYD 938
RKRY+NTIEDMKGKIRVYCR+RPLNEKE +E+E+ +LT++DEFTVEHPWKDDK KQH+YD
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIYD 60
Query: 939 QVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAIS 998
+VFD A+Q+D+FEDT+YLVQSAVDGYNVCIFAYGQTGSGKTFTIYG E NPG+TPRA
Sbjct: 61 RVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATK 120
Query: 999 ELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058
ELF ILK+++ +FSFSLKAYMVELYQDTLVDLLLP++ +RLKLEIKKDSKGMV VENVT
Sbjct: 121 ELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTT 180
Query: 1059 VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFV 1118
+PIST EE++ I++RGS++RH SGT MNEESSRSHLILS+VIES +LQTQS ARGKLSFV
Sbjct: 181 IPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQSAARGKLSFV 240
Query: 1119 DLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSL 1178
DLAGSERVKKSGS+GNQLKEAQSINKSLSALGDVI ALSSG+QHIPYRNHKLTMLMSDSL
Sbjct: 241 DLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNHKLTMLMSDSL 300
Query: 1179 GGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKE 1238
GGNAKTLMFVNVSPAESNL+E+YNSL YASRVR+IVNDP+K++SSKE+ RLK+LVAYWKE
Sbjct: 301 GGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTIVNDPSKHISSKEMVRLKKLVAYWKE 360
Query: 1239 QAGKKGD 1245
QAGKKG+
Sbjct: 361 QAGKKGE 367
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With
Adp
Length = 330
Score = 271 bits (692), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 205/326 (62%), Gaps = 2/326 (0%)
Query: 890 KGKIRVYCRLRPLNEK--EDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQ 947
KG IRV R+RP+ ++ E E V D+ ++ H K D+VF A+Q
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQ 62
Query: 948 EDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKE 1007
+DVF++ + LV S +DG+NVCIFAYGQTG+GKT+T+ G+ NPGI RA+ LF ++++
Sbjct: 63 QDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEK 122
Query: 1008 NNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEI 1067
+ + +++ E+Y + L DLL +++L++ + D G + V +T + + ++I
Sbjct: 123 ASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDI 182
Query: 1068 KSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVK 1127
+ + G R T T +NE SSRSH +L + + + T GKL+ VDLAGSERV
Sbjct: 183 NKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLAGSERVG 242
Query: 1128 KSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMF 1187
KSG+ G++L+EAQ INKSLSALGDVI+AL S H+P+RN KLT L+ DSL G++KTLM
Sbjct: 243 KSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMV 302
Query: 1188 VNVSPAESNLEESYNSLTYASRVRSI 1213
V VSP E N E+ SL +A RVRS+
Sbjct: 303 VQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused
To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 248 bits (634), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 151/366 (41%), Positives = 219/366 (59%), Gaps = 29/366 (7%)
Query: 869 EVLYKEEQILRKRYFNTIEDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT------ 922
E+L KEE + R+ N +++++G IRVY R+RP ++ E L +++EF
Sbjct: 38 EILIKEETV-RRTLHNELQELRGNIRVYLRIRP--ALKNLENSDTSLINVNEFDDNSGVQ 94
Query: 923 ---VEHPWKDDKVKQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGK 979
V +V + +D++FD T DVF++ LVQS++DGYNV IFAYGQTGSGK
Sbjct: 95 SMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGK 154
Query: 980 TFTIYGSECNP--GITPRAISELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNE 1036
TFT+ NP GI P IS +F + K K + + + A +E+Y + +VDLL N
Sbjct: 155 TFTM----LNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNN 210
Query: 1037 KR------LKLEIKKDSKGMVLVENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEES 1089
+ LK EI+ D + V + + E ++ I+++ + R T+ T NE S
Sbjct: 211 NKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASNEHS 270
Query: 1090 SRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSAL 1149
SRSH I I + +N +T + + G L+ VDLAGSER+ S G++L+E Q+INKSLSAL
Sbjct: 271 SRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSAL 330
Query: 1150 GDVISALS---SGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTY 1206
GDVI AL S +HIP+RN KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +
Sbjct: 331 GDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRF 390
Query: 1207 ASRVRS 1212
AS+V S
Sbjct: 391 ASKVNS 396
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 247 bits (631), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 228/407 (56%), Gaps = 25/407 (6%)
Query: 852 EQTAAILKMQGAQLSELEVLYKEEQIL-----RKRYFNTIEDMKGKIRVYCRLRPLNEKE 906
++T +L+ Q +ELE +EQ+ RK NT+ D++G IRV+CR+RP E E
Sbjct: 25 QRTEELLRCNEQQAAELETC--KEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESE 82
Query: 907 DAEKERYVLTSLDEFTVEHPWKDDKVKQHM------YDQVFDGYATQEDVFEDTRYLVQS 960
+ + T DE TVE D + K M +DQVF ++Q D+FE L+QS
Sbjct: 83 E-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQS 141
Query: 961 AVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYM 1019
A+DGYN+CIFAYGQTGSGKT+T+ G + G+ PR + LF ++ N + + +KA
Sbjct: 142 ALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATF 201
Query: 1020 VELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRH 1079
+E+Y + L D LL +K +++ + K++K + V N+T + ++ ++ R
Sbjct: 202 LEIYNEVLYD-LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA 260
Query: 1080 TSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEA 1139
T+ T NE SSRSH + + + + + Q ++ G ++ VDLAGSE K S ++ E
Sbjct: 261 TASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTET 316
Query: 1140 QSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEE 1199
++IN+SLS L +VI AL HIPYRN KLT L+ SLGGN+KTLMF+NVSP + +E
Sbjct: 317 KNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 376
Query: 1200 SYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQAGKKGDY 1246
S SL +A+ V S K +K L VA Q+ G +
Sbjct: 377 SVKSLRFAASVNSC-----KMTKAKRNRYLNNSVANSSTQSNNSGSF 418
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 247 bits (630), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 153/407 (37%), Positives = 228/407 (56%), Gaps = 25/407 (6%)
Query: 852 EQTAAILKMQGAQLSELEVLYKEEQIL-----RKRYFNTIEDMKGKIRVYCRLRPLNEKE 906
++T +L+ Q +ELE +EQ+ RK NT+ D++G IRV+CR+RP E E
Sbjct: 11 QRTEELLRCNEQQAAELETC--KEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESE 68
Query: 907 DAEKERYVLTSLDEFTVEHPWKDDKVKQHM------YDQVFDGYATQEDVFEDTRYLVQS 960
+ + T DE TVE D + K M +DQVF ++Q D+FE L+QS
Sbjct: 69 E-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQS 127
Query: 961 AVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYM 1019
A+DGYN+CIFAYGQTGSGKT+T+ G + G+ PR + LF ++ N + + +KA
Sbjct: 128 ALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATF 187
Query: 1020 VELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRH 1079
+E+Y + L D LL +K +++ + K++K + V N+T + ++ ++ R
Sbjct: 188 LEIYNEVLYD-LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA 246
Query: 1080 TSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEA 1139
T+ T NE SSRSH + + + + + Q ++ G ++ VDLAGSE K S ++ E
Sbjct: 247 TASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTET 302
Query: 1140 QSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEE 1199
++IN+SLS L +VI AL HIPYRN KLT L+ SLGGN+KTLMF+NVSP + +E
Sbjct: 303 KNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 362
Query: 1200 SYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQAGKKGDY 1246
S SL +A+ V S K +K L VA Q+ G +
Sbjct: 363 SVKSLRFAASVNSC-----KMTKAKRNRYLNNSVANSSTQSNNSGSF 404
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 246 bits (629), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 150/370 (40%), Positives = 215/370 (58%), Gaps = 42/370 (11%)
Query: 869 EVLYKEEQILRKRYFNTIEDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWK 928
++L KEE LR+ N +++++G IRVYCR+RP ED E + P+
Sbjct: 7 KILVKEES-LRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKV---------QPFD 56
Query: 929 DDKVKQHM-------------YDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQT 975
DD Q M +D++FD T +++F++ L+QS++DGYNVCIFAYGQT
Sbjct: 57 DDNGDQGMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQT 116
Query: 976 GSGKTFTIYGSECNPG--ITPRAISELFRILKK-ENNKFSFSLKAYMVELYQDTLVDLL- 1031
GSGKT+T+ NPG I P I+ +F + K +S+ + +E+Y + +VDLL
Sbjct: 117 GSGKTYTML----NPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLLR 172
Query: 1032 --LPRNEKR-----LKLEIKKDSK-GMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGT 1083
P E K EI+ D + + N+T + + + + +++R + R T+ T
Sbjct: 173 SGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTAST 232
Query: 1084 QMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSIN 1143
NE SSRSH I I +E N T ++G L+ VDLAGSER+ S G +L+E QSIN
Sbjct: 233 AANEHSSRSHSIFIIHLEGKNEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSIN 292
Query: 1144 KSLSALGDVISALSSGS---QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEES 1200
KSLS LGDVI AL+S +HIP+RN KLT L+ SL G++KTLMFVN+SPA +L E+
Sbjct: 293 KSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNET 352
Query: 1201 YNSLTYASRV 1210
NSL +AS+V
Sbjct: 353 INSLRFASKV 362
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 212/357 (59%), Gaps = 28/357 (7%)
Query: 878 LRKRYFNTIEDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT---------VEHPWK 928
+R+ N +++++G IRVYCR+RP ++ E L +++EF V
Sbjct: 1 MRRTLHNELQELRGNIRVYCRIRP--ALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQN 58
Query: 929 DDKVKQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEC 988
+V + +D++FD T DVF++ LVQS++DGYNVCIFAYGQTGSGKTFT+
Sbjct: 59 TAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML---- 114
Query: 989 NPG--ITPRAISELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKR------L 1039
NPG I P IS +F + K K + + + +E+Y + +VDLL N + L
Sbjct: 115 NPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGL 174
Query: 1040 KLEIKKDSKGMVLVENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSI 1098
K EI+ D + + + E ++ I+++ + R T+ T NE SSRSH I I
Sbjct: 175 KHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFII 234
Query: 1099 VIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS- 1157
+ +N +T + + G L+ VDLAGSER+ S G++L+E Q+INKSLS LGDVI AL
Sbjct: 235 HLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQ 294
Query: 1158 --SGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
S +HIP+RN KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +AS+V S
Sbjct: 295 PDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 351
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 145/373 (38%), Positives = 218/373 (58%), Gaps = 20/373 (5%)
Query: 852 EQTAAILKMQGAQLSELEVLYKEEQIL-----RKRYFNTIEDMKGKIRVYCRLRPLNEKE 906
++T +L+ Q +ELE +EQ+ RK NT+ D++G IRV+CR+RP E E
Sbjct: 14 QRTEELLRCNEQQAAELETC--KEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESE 71
Query: 907 DAEKERYVLTSLDEFTVEHPWKDDKVKQHM------YDQVFDGYATQEDVFEDTRYLVQS 960
+ + T DE TVE D + K M +DQVF ++Q D+FE L+QS
Sbjct: 72 E-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQS 130
Query: 961 AVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYM 1019
A+DGYN+CIFAYGQ+GSGKT+T+ G + G+ PR + LF ++ N + + +KA
Sbjct: 131 ALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATF 190
Query: 1020 VELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRH 1079
+E+Y + L D LL +K +++ + K++K + V N+T + ++ ++ R
Sbjct: 191 LEIYNEVLYD-LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA 249
Query: 1080 TSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEA 1139
T+ T NE SSRSH + + + + + Q ++ G ++ VDLAGSE K S ++ E
Sbjct: 250 TASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTET 305
Query: 1140 QSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEE 1199
++IN+SLS L +VI AL HIPYRN KLT L+ SLGGN+KTLMF+NVSP + +E
Sbjct: 306 KNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 365
Query: 1200 SYNSLTYASRVRS 1212
S SL +A+ V S
Sbjct: 366 SVKSLRFAASVNS 378
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 227/407 (55%), Gaps = 25/407 (6%)
Query: 852 EQTAAILKMQGAQLSELEVLYKEEQIL-----RKRYFNTIEDMKGKIRVYCRLRPLNEKE 906
++T +L+ Q +ELE +EQ+ RK NT+ D++G IRV+CR+RP E E
Sbjct: 14 QRTEELLRCNEQQAAELETC--KEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESE 71
Query: 907 DAEKERYVLTSLDEFTVEHPWKDDKVKQHM------YDQVFDGYATQEDVFEDTRYLVQS 960
+ + T DE TVE D + K M +DQVF ++Q D+FE L+QS
Sbjct: 72 E-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQS 130
Query: 961 AVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYM 1019
A+DGYN+CIFAYGQTGSGKT+T+ G + G+ PR + LF ++ N + + +KA
Sbjct: 131 ALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATF 190
Query: 1020 VELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRH 1079
+E+Y + L D LL +K +++ + K++K + V N+T + ++ ++ R
Sbjct: 191 LEIYNEVLYD-LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA 249
Query: 1080 TSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEA 1139
T+ T NE SSRSH + + + + + Q ++ G ++ VDLAGSE K S ++ E
Sbjct: 250 TASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTET 305
Query: 1140 QSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEE 1199
++I +SLS L +VI AL HIPYRN KLT L+ SLGGN+KTLMF+NVSP + +E
Sbjct: 306 KNIKRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 365
Query: 1200 SYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQAGKKGDY 1246
S SL +A+ V S K +K L VA Q+ G +
Sbjct: 366 SVKSLRFAASVNSC-----KMTKAKRNRYLNNSVANSSTQSNNSGSF 407
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 244 bits (623), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 152/407 (37%), Positives = 227/407 (55%), Gaps = 25/407 (6%)
Query: 852 EQTAAILKMQGAQLSELEVLYKEEQIL-----RKRYFNTIEDMKGKIRVYCRLRPLNEKE 906
++T +L+ Q +ELE +EQ+ RK NT+ D++ IRV+CR+RP E E
Sbjct: 17 QRTEELLRCNEQQAAELETC--KEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESE 74
Query: 907 DAEKERYVLTSLDEFTVEHPWKDDKVKQHM------YDQVFDGYATQEDVFEDTRYLVQS 960
+ + T DE TVE D + K M +DQVF ++Q D+FE L+QS
Sbjct: 75 E-NRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQS 133
Query: 961 AVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYM 1019
A+DGYN+CIFAYGQTGSGKT+T+ G + G+ PR + LF ++ N + + +KA
Sbjct: 134 ALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATF 193
Query: 1020 VELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRH 1079
+E+Y + L D LL +K +++ + K++K + V N+T + ++ ++ R
Sbjct: 194 LEIYNEVLYD-LLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRA 252
Query: 1080 TSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEA 1139
T+ T NE SSRSH + + + + + Q ++ G ++ VDLAGSE K S ++ E
Sbjct: 253 TASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTS----TRMTET 308
Query: 1140 QSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEE 1199
++IN+SLS L +VI AL HIPYRN KLT L+ SLGGN+KTLMF+NVSP + +E
Sbjct: 309 KNINRSLSELTNVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQE 368
Query: 1200 SYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQAGKKGDY 1246
S SL +A+ V S K +K L VA Q+ G +
Sbjct: 369 SVKSLRFAASVNSC-----KMTKAKRNRYLNNSVANSSTQSNNSGSF 410
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 240 bits (612), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 209/346 (60%), Gaps = 16/346 (4%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL---TSLDEFTVEHP--WKDDKVKQHMYDQVFDGYATQ 947
+RV R RP+N KE A V+ L + +V++P + K +D V+D A Q
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQ 82
Query: 948 EDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRI 1003
+++++T R LV S + G+N IFAYGQTG+GKT+T+ G +P G+ P + +F
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTH 142
Query: 1004 LKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPIST 1063
+ + N+ + ++A +E+YQ+ + DLL KRL+L+ + D+ V V++++ +
Sbjct: 143 ISRSQNQ-QYLVRASYLEIYQEEIRDLLSKDQTKRLELKERPDTG--VYVKDLSSFVTKS 199
Query: 1064 FEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS---VARGKLSFVDL 1120
+EI+ ++ G+ R T MNE SSRSH I I IE + + + GKL+ VDL
Sbjct: 200 VKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGENHIRVGKLNLVDL 259
Query: 1121 AGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG-SQHIPYRNHKLTMLMSDSLG 1179
AGSER K+G+ G +LKEA IN SLSALG+VISAL G S HIPYR+ KLT L+ DSLG
Sbjct: 260 AGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLG 319
Query: 1180 GNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSSKE 1225
GNAKT+M NV PA N+EE+ +L YA+R ++I N P N K+
Sbjct: 320 GNAKTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKD 365
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 204/346 (58%), Gaps = 28/346 (8%)
Query: 889 MKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT---------VEHPWKDDKVKQHMYDQ 939
M+G IRVYCR+RP ++ E L +++EF V +V + +D+
Sbjct: 1 MRGNIRVYCRIRP--ALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 940 VFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPG--ITPRAI 997
+FD T DVF++ LVQS++DGYNVCIFAYGQTGSGKTFT+ NPG I P I
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTI 114
Query: 998 SELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKR------LKLEIKKDSKGM 1050
S +F + K K + + + +E+Y + +VDLL N + LK EI+ D +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 1051 VLVENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS 1109
+ + E ++ I+++ + R T+ T NE SSRSH I I + +N +T +
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SGSQHIPYR 1166
+ G L+ VDLAGS R+ S G++L+E Q+INKSLS LGDVI AL S +HIP+R
Sbjct: 235 HSYGTLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
N KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +AS+V S
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 204/346 (58%), Gaps = 28/346 (8%)
Query: 889 MKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT---------VEHPWKDDKVKQHMYDQ 939
M+G IRVYCR+RP ++ E L +++EF V +V + +D+
Sbjct: 1 MRGNIRVYCRIRP--ALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 940 VFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPG--ITPRAI 997
+FD T DVF++ LVQS++DGYNVCIFAYGQTGSGKTFT+ NPG I P I
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTI 114
Query: 998 SELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKR------LKLEIKKDSKGM 1050
S +F + K K + + + +E+Y + +VDLL N + LK EI+ D +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 1051 VLVENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS 1109
+ + E ++ I+++ + R T+ T NE SSRSH I I + +N +T +
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA 234
Query: 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SGSQHIPYR 1166
+ G L+ VDLAGSER+ S G++L+E Q+I KSLS LGDVI AL S +HIP+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
N KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +AS+V S
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/346 (41%), Positives = 204/346 (58%), Gaps = 28/346 (8%)
Query: 889 MKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT---------VEHPWKDDKVKQHMYDQ 939
M+G IRVYCR+RP ++ E L +++EF V +V + +D+
Sbjct: 1 MRGNIRVYCRIRP--ALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDK 58
Query: 940 VFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPG--ITPRAI 997
+FD T DVF++ LVQS++DGYNVCIFAYGQTGSGKTFT+ NPG I P I
Sbjct: 59 IFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTI 114
Query: 998 SELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKR------LKLEIKKDSKGM 1050
S +F + K K + + + +E+Y + +VDLL N + LK EI+ D +
Sbjct: 115 SHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETK 174
Query: 1051 VLVENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS 1109
+ + E ++ I+++ + R T+ T NE SS SH I I + +N +T +
Sbjct: 175 TTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA 234
Query: 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SGSQHIPYR 1166
+ G L+ VDLAGSER+ S G++L+E Q+INKSLS LGDVI AL S +HIP+R
Sbjct: 235 HSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFR 294
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
N KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +AS+V S
Sbjct: 295 NSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 340
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 237 bits (605), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 143/344 (41%), Positives = 203/344 (59%), Gaps = 28/344 (8%)
Query: 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT---------VEHPWKDDKVKQHMYDQVF 941
G IRVYCR+RP ++ E L +++EF V +V + +D++F
Sbjct: 2 GNIRVYCRIRP--ALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 59
Query: 942 DGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPG--ITPRAISE 999
D T DVF++ LVQS++DGYNVCIFAYGQTGSGKTFT+ NPG I P IS
Sbjct: 60 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML----NPGDGIIPSTISH 115
Query: 1000 LFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKR------LKLEIKKDSKGMVL 1052
+F + K K + + + +E+Y + +VDLL N + LK EI+ D +
Sbjct: 116 IFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTT 175
Query: 1053 VENVTV-VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVA 1111
+ + E ++ I+++ + R T+ T NE SSRSH I I + +N +T + +
Sbjct: 176 TITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHS 235
Query: 1112 RGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SGSQHIPYRNH 1168
G L+ VDLAGSER+ S G++L+E Q+INKSLS LGDVI AL S +HIP+RN
Sbjct: 236 YGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNS 295
Query: 1169 KLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
KLT L+ SL G++KTLMFVN+SP+ S++ E+ NSL +AS+V S
Sbjct: 296 KLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNS 339
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya
Gossypii
Length = 349
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 212/347 (61%), Gaps = 29/347 (8%)
Query: 889 MKGKIRVYCRLRP--LNEKEDAEKERYVLTSLDE------FTVEHPWKDDKVKQHMYDQV 940
++G IRVYCR+RP LNE +D ++ +E T+ +D +
Sbjct: 3 LRGNIRVYCRVRPPLLNEPQDMS--HILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMI 60
Query: 941 FDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISEL 1000
F+ T +++FE+ R LVQS++DGYNVCIFAYGQTGSGKT+T+ + G+ P +S +
Sbjct: 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHI 118
Query: 1001 FRILKK-ENNKFSFSLKAYMVELYQDTLVDLLLPRNEKR----------LKLEIKKDS-K 1048
F+ + +++ ++ +E+Y +T++DLL R+ K K +I+ D K
Sbjct: 119 FKWTANLKERGWNYEMECEYIEIYNETILDLL--RDFKSHDNIDEILDSQKHDIRHDHEK 176
Query: 1049 GMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQ 1108
+ NVT + +++ ++ +I+++ S R T+ T+ NE SSRSH + + I NL T
Sbjct: 177 QGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTG 236
Query: 1109 SVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSS---GSQHIPY 1165
++GKL+ VDLAGSER+ S +G +L+E Q+INKSLS LGDVI AL++ G ++IP+
Sbjct: 237 ETSQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPF 296
Query: 1166 RNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
RN KLT L+ SL G++KTLMFVN+ P +++ E+ NSL +AS+V S
Sbjct: 297 RNSKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNS 343
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 235 bits (600), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 135/344 (39%), Positives = 211/344 (61%), Gaps = 25/344 (7%)
Query: 889 MKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWK-DDKVKQHM----------- 936
+KG IRV+CR+R ++ + +S D E P +D+ KQ +
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSS---SSEDIIQYEAPQDINDESKQELVITRNINNNFS 428
Query: 937 -----YDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPG 991
+D++F+ + + VFE+ L+Q ++DG NVC+FAYGQTGSGKTFT+ S G
Sbjct: 429 NLRFLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNG 486
Query: 992 ITPRAISELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDS-KG 1049
+ P ++ ++F +++ K +S++++ +E+Y + +VDLL P+ + K EIK D G
Sbjct: 487 MIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDPNTKYEIKHDDIAG 546
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS 1109
V NV+ + I + E+ +I+ + + +R T+ T+ N+ SSRSH I I ++ N T+
Sbjct: 547 KTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKE 606
Query: 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS-SGSQHIPYRNH 1168
+ G L+ +DLAGSER+ S + G++LKE Q+INKSLS LGDVI +L+ H+PYRN
Sbjct: 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNS 666
Query: 1169 KLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
KLT L+ SLGGN+KTLMFVN+SP +L E+ NSL +A++V +
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKVNN 710
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 230 bits (586), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 192/333 (57%), Gaps = 12/333 (3%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFE 952
I+V CR RPLNE E ++Y+ E TV K + +D+VF +QE V+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA-----SKPYAFDRVFQSSTSQEQVYN 63
Query: 953 DT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRILKKEN 1008
D + +V+ ++GYN IFAYGQT SGKT T+ G +P GI PR + ++F + +
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 1009 NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIK 1068
F +K E+Y D + DLL + + L + +D + V+ T + + +E+
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLL---DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 1069 SIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKK 1128
I G RH + T MNE SSRSH I I ++ N QT+ GKL VDLAGSE+V K
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 1129 SGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFV 1188
+G+ G L EA++INKSLSALG+VISAL+ GS ++PYR+ K+T ++ DSLGGN +T + +
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 1189 NVSPAESNLEESYNSLTYASRVRSIVNDPNKNV 1221
SP+ N E+ ++L + R ++I N NV
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 229 bits (585), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 132/348 (37%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFT----VEHPWKDDKVKQ-------HMYDQVF 941
I+V R RPLN +E E ++ +DE + V+ P ++ Q +D V+
Sbjct: 6 IKVIVRCRPLNARETRENALNII-RMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 942 DGYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISEL 1000
D + +F+ + + L+ + ++G+N IFAYGQTG+GKT+T+ G++ PG P + L
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 1001 FRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVP 1060
F + ++ +F + +ELY + + DL+ + KL +K+D + V+ +++
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLI----KNNTKLPLKEDKTRGIYVDGLSMHR 180
Query: 1061 ISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTN-LQTQSVAR-GKLSFV 1118
++T E+ +++ +G RH + TQMN+ SSRSH I + IE + ++ + V R GKL+ V
Sbjct: 181 VTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLV 240
Query: 1119 DLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSL 1178
DLAGSER K+G++G L E IN SLSALG VIS L G+ HIPYR+ KLT L+ DSL
Sbjct: 241 DLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSL 300
Query: 1179 GGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSSKEV 1226
GGN+KTLM N+SPA +N +E+ ++L YA R + I N P N K+
Sbjct: 301 GGNSKTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDA 348
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map
Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 228 bits (582), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/333 (39%), Positives = 191/333 (57%), Gaps = 12/333 (3%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFE 952
I+V CR RPLNE E ++YV E TV K + +D+VF +QE V+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYVAKFQGEDTVMIA-----SKPYAFDRVFQSSTSQEQVYN 63
Query: 953 DT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRILKKEN 1008
D + +V+ ++GYN IFAYGQT SGK T+ G +P GI PR + ++F + +
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 1009 NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIK 1068
F +K E+Y D + DLL + + L + +D + V+ T + + +E+
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLL---DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 1069 SIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKK 1128
I G RH + T MNE SSRSH I I ++ N QT+ GKL VDLAGSE+V K
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 1129 SGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFV 1188
+G+ G L EA++INKSLSALG+VISAL+ GS ++PYR+ K+T ++ DSLGGN +T + +
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 1189 NVSPAESNLEESYNSLTYASRVRSIVNDPNKNV 1221
SP+ N E+ ++L + R ++I N NV
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTIKNTVCVNV 333
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of Nucleotide-Free
Kinesin Complexed To The Microtubule
Length = 325
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 189/325 (58%), Gaps = 12/325 (3%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFE 952
I+V CR RPLNE E ++Y+ E TV K + +D+VF +QE V+
Sbjct: 9 IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIASK-----PYAFDRVFQSSTSQEQVYN 63
Query: 953 DT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRILKKEN 1008
D + +V+ ++GYN IFAYGQT SGKT T+ G +P GI PR + ++F + +
Sbjct: 64 DCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMD 123
Query: 1009 NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIK 1068
F +K E+Y D + DLL + + L + +D + V+ T + + +E+
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLL---DVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVM 180
Query: 1069 SIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKK 1128
I G RH + T MNE SSRSH I I ++ N QT+ GKL VDLAGSE+V K
Sbjct: 181 DTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAGSEKVSK 240
Query: 1129 SGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFV 1188
+G+ G L EA++INKSLSALG+VISAL+ GS ++PYR+ K+T ++ DSLGGN +T + +
Sbjct: 241 TGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVI 300
Query: 1189 NVSPAESNLEESYNSLTYASRVRSI 1213
SP+ N E+ ++L + R ++I
Sbjct: 301 CCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor
Domain Dimer-Tail Complex
Length = 365
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 195/328 (59%), Gaps = 10/328 (3%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVF- 951
I+V CR RPLN+ E+ ++V+ + VE K +++D+VF A+QE V+
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPN--NVEENCISIAGKVYLFDKVFKPNASQEKVYN 70
Query: 952 EDTRYLVQSAVDGYNVCIFAYGQTGSGKTFT---IYGSECNPGITPRAISELFRILKKEN 1008
E + +V + GYN IFAYGQT SGKT T + G GI PR ++++F +
Sbjct: 71 EAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAME 130
Query: 1009 NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIK 1068
F +K E+Y D + DLL + ++ L + +D + V+ T +S+ E++
Sbjct: 131 VNLEFHIKVSYYEIYMDKIRDLL---DVSKVNLSVHEDKNRVPYVKGATERFVSSPEDVF 187
Query: 1069 SIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKK 1128
+I+ G RH + T MNE SSRSH + I ++ NL+ Q GKL VDLAGSE+V K
Sbjct: 188 EVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGSEKVSK 247
Query: 1129 SGSSGNQLKEAQSINKSLSALGDVISALSSGSQ-HIPYRNHKLTMLMSDSLGGNAKTLMF 1187
+G+ G L EA++INKSLSALG+VISAL+ G++ HIPYR+ KLT ++ +SLGGNA+T +
Sbjct: 248 TGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIV 307
Query: 1188 VNVSPAESNLEESYNSLTYASRVRSIVN 1215
+ SPA N E+ ++L + R +++ N
Sbjct: 308 ICCSPASFNESETKSTLDFGRRAKTVKN 335
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/349 (38%), Positives = 207/349 (59%), Gaps = 31/349 (8%)
Query: 892 KIRVYCRLRPLNEKE---------DAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVF- 941
K++V R+RP+N +E D + + +L ++ + + + K YD F
Sbjct: 2 KVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARG-QPKVFAYDHCFW 60
Query: 942 -------DGYATQEDVFED-TRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGIT 993
+ YA Q+ VF+ ++Q+A DGYN CIFAYGQTGSGK++T+ G+ PG+
Sbjct: 61 SMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLI 120
Query: 994 PRAISELF-RILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVL 1052
PR S LF R K+EN + SF ++ +E+Y + + DLL P+ R L++++ S
Sbjct: 121 PRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDPKGS-RQTLKVREHSVLGPY 179
Query: 1053 VENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVAR 1112
V+ ++ + ++++++I+S++ G+ R + T MNEESSRSH + I + T +S
Sbjct: 180 VDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTS 239
Query: 1113 ----GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS------QH 1162
GKLS VDLAGSER K+G++G++LKE +INKSL+ LG VISAL+ S +
Sbjct: 240 GEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKF 299
Query: 1163 IPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVR 1211
+PYR+ LT L+ DSLGGN+KT M VSPA N +E+ ++L YA R +
Sbjct: 300 VPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 225 bits (574), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 132/357 (36%), Positives = 210/357 (58%), Gaps = 19/357 (5%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLT--SLDEFTVEHPWKDDKVKQ--HMYDQVFDGYATQE 948
I+V R RP N E + ++T D TV D K Q +D+VFD Q
Sbjct: 8 IKVVARFRPQNRVEIESGGQPIVTFQGPDTCTV-----DSKEAQGSFTFDRVFDMSCKQS 62
Query: 949 DVFE-DTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP----GITPRAISELFRI 1003
D+F+ + V ++GYN +FAYGQTG+GK++T+ G+ + G+ PR + ++F
Sbjct: 63 DIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTS 122
Query: 1004 LKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPIST 1063
+ ++++ +E+Y + + DLL P+N+ L + ++ V V+ + + +S+
Sbjct: 123 ILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDN---LPVHEEKNRGVYVKGLLEIYVSS 179
Query: 1064 FEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGS 1123
+E+ +++RG + R + T MN+ESSRSH I I I N++T S G+L VDLAGS
Sbjct: 180 VQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLAGS 239
Query: 1124 ERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG-SQHIPYRNHKLTMLMSDSLGGNA 1182
E+V K+G+SG L+EA+ INKSLSALG VI+AL+ G S H+PYR+ KLT ++ +SLGGN+
Sbjct: 240 EKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNS 299
Query: 1183 KTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSSKEVARLKRLVAYWKEQ 1239
+T + +N SP+ N E+ ++L + R +SI N N + A LK+++A K Q
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVN-AELSPAELKQMLAKAKTQ 355
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 220 bits (560), Expect = 5e-57, Method: Composition-based stats.
Identities = 140/354 (39%), Positives = 196/354 (55%), Gaps = 32/354 (9%)
Query: 889 MKGKIRVYCRLRPLNEKEDAEK-----------------ERYVLTSLDEF--TVEHPWKD 929
+KG IRV+CR+RP+ E R L+ DE T+
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 930 DKVKQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECN 989
+D+VF + Q++VFE+ LVQSA+DGY VCIFAYGQTGSGKTFT+ G
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 990 ----PGITPRAISELFRILKKENNK-FSFSLKAYMVELYQDTLVDLLLP--RNEKRLKLE 1042
G+ PRA+ LF + ++ + + +++S A VE+Y +T+ DLL R + + E
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQGGECE 199
Query: 1043 IKKDSKGM--VLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI 1100
I++ G + V N VP+S +E+ +++ R + T NE SSRSH + + I
Sbjct: 200 IRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQLQI 259
Query: 1101 ESTNLQTQSVARGKLSFVDLAGSERVKKSGSSG----NQLKEAQSINKSLSALGDVISAL 1156
+ LS VDLAGSER+ + G +L+E Q+IN SLS LG VI AL
Sbjct: 260 SGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMAL 319
Query: 1157 SSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRV 1210
S+ H+PYRN KLT L+ +SLGG+AK LMFVN+SP E N+ ES NSL +AS+V
Sbjct: 320 SNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 213 bits (541), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 40/371 (10%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLT---SLDEFTVEHP--WKDDKVKQHMYDQVFDGYATQ 947
++V R RPL+ KE+A +LT L + T+ +P + K +D V+D + Q
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPRAAPGELPKTFTFDAVYDASSKQ 82
Query: 948 EDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRI 1003
D++++T R L+ S + G+N +FAYGQTG+GKT+T+ G+ P G+ P A +F
Sbjct: 83 ADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTH 142
Query: 1004 LKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPIST 1063
+ + N+ + ++A +E+YQ+ + DLL KRL E+K++ + V +++++
Sbjct: 143 ISRSQNQ-QYLVRASYLEIYQEEIRDLLSKEPGKRL--ELKENPETGVYIKDLSSFVTKN 199
Query: 1064 FEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS---VARGKLSFVDL 1120
+EI+ ++ G+ R T MNE SSRSH I I +E + + + GKL+ VDL
Sbjct: 200 VKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDL 259
Query: 1121 AGSERVKKSG--SSGN----------------------QLKEAQSINKSLSALGDVISAL 1156
AGSER K+G ++G + KEA IN SLSALG+VI+AL
Sbjct: 260 AGSERQNKAGPNTAGGAATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAAL 319
Query: 1157 SSG-SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVN 1215
+ S HIPYR+ KLT L+ DSLGGNAKT+M + PA + +ES ++L +A+R ++I N
Sbjct: 320 AGNRSTHIPYRDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIKN 379
Query: 1216 DPNKNVSSKEV 1226
P N K+
Sbjct: 380 KPRVNEDPKDT 390
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 209 bits (532), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 201/346 (58%), Gaps = 20/346 (5%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLD--EFTVEHPWKDDKVKQHMYDQVFDGYATQEDV 950
I+VY R+RPLN +E + V+ + E H K+ +D+ F + Q DV
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDV 84
Query: 951 FEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEC-----------NPGITPRAIS 998
+ L++ ++GYN +FAYGQTG+GKT T+ G+E + GI PRA+S
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALS 144
Query: 999 ELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058
LF L+ + ++++ +ELY + L DLL + ++++ KG V+++ +
Sbjct: 145 HLFDELRMM--EVEYTMRISYLELYNEELCDLLSTDDTTKIRIFDDSTKKGSVIIQGLEE 202
Query: 1059 VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIV--IESTNLQTQSVAR-GKL 1115
+P+ + +++ ++++G ++R T+ T MN +SSRSH + SIV I ++ + + + GKL
Sbjct: 203 IPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGEDMLKIGKL 262
Query: 1116 SFVDLAGSERVKKSGS-SGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLM 1174
+ VDLAGSE V K+G+ G +++E +IN+SL LG VI+AL + H+PYR KLT L+
Sbjct: 263 NLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLL 322
Query: 1175 SDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
+SLGG KT + +SP ++EE+ ++L YA R ++I N P N
Sbjct: 323 QESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVN 368
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.5-
Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor
Domain In The Rigor State
Length = 373
Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/357 (37%), Positives = 203/357 (56%), Gaps = 31/357 (8%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R+RP N E ++ S E +V DK K + +D VF
Sbjct: 15 KGKNIQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 944 YATQEDVFEDTRYLVQSAVD----GYNVCIFAYGQTGSGKTFTIYGS---------ECNP 990
Q DV+ R +V +D GYN IFAYGQTG+GKTFT+ G E +P
Sbjct: 75 STKQIDVY---RSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDP 131
Query: 991 --GITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD-- 1046
GI PR + ++F K +N FS+K ++E+Y + L DLL P ++ +L++ D
Sbjct: 132 LAGIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPR 189
Query: 1047 SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---EST 1103
+K V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 190 NKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETT 249
Query: 1104 NLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHI 1163
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+
Sbjct: 250 IDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHV 309
Query: 1164 PYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
PYR KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 310 PYRESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGS---------ECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ G E +P G
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDG 134
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F L +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 135 IIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With (R)-
Mon97, A New Monastrol-Based Inhibitor That Binds As (R)-
Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With (R)-
Mon97, A New Monastrol-Based Inhibitor That Binds As (R)-
Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 14 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 73
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGS---------ECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ G E +P G
Sbjct: 74 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 133
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F L +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 134 IIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 191
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 192 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 251
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 252 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 311
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 312 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 365
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp And N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp And N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp And N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With
Mg-Adp And N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGS---------ECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ G E +P G
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 134
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F L +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 135 IIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 65
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTI---------YGSECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ Y E +P G
Sbjct: 66 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 125
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F K +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 126 IIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 183
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 184 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 243
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 244 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 303
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 304 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 357
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTI---------YGSECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ Y E +P G
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 134
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F K +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 135 IIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 192
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 193 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 252
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 253 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 312
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 313 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib
Length = 370
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 25/354 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 17 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 76
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGS---------ECNP--G 991
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ G E +P G
Sbjct: 77 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAG 136
Query: 992 ITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKG 1049
I PR + ++F L +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 137 IIPRTLHQIFEKLT--DNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKR 194
Query: 1050 MVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQ 1106
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 195 GVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDG 254
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYR 1166
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR
Sbjct: 255 EELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYR 314
Query: 1167 NHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 315 ESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 368
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 204 bits (519), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 131/355 (36%), Positives = 199/355 (56%), Gaps = 27/355 (7%)
Query: 890 KGK-IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDG 943
KGK I+V R RP N E ++ E +V DK K + +D VF
Sbjct: 15 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGA 74
Query: 944 YATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP------------ 990
Q DV+ ++ + GYN IFAYGQTG+GKTFT+ G E +P
Sbjct: 75 STKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEG-ERSPNEEYTWEEVPLA 133
Query: 991 GITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SK 1048
GI PR + ++F K +N FS+K ++E+Y + L DLL P ++ +L++ D +K
Sbjct: 134 GIIPRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNK 191
Query: 1049 GMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNL 1105
V+++ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 1106 QTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPY 1165
+ V GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PY
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 1166 RNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220
R KLT ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P N
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVN 366
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 204/355 (57%), Gaps = 33/355 (9%)
Query: 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDK--------VKQHMYDQVF 941
+G + V R+RPLN +E+ SL E T + WK D K +D+VF
Sbjct: 3 EGAVAVCVRVRPLNSREE---------SLGE-TAQVYWKTDNNVIYQVDGSKSFNFDRVF 52
Query: 942 DGYATQEDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISEL 1000
G T ++V+E+ ++ SA+ GYN IFAYGQT SGKT+T+ GSE + G+ PRAI ++
Sbjct: 53 HGNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDI 112
Query: 1001 FRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVP 1060
F+ +KK ++ F L+ +E+Y +T+ DLL +K L I++D V V ++T
Sbjct: 113 FQKIKKFPDR-EFLLRVSYMEIYNETITDLLCG-TQKMKPLIIREDVNRNVYVADLTEEV 170
Query: 1061 ISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIES------TNLQTQSVARGK 1114
+ T E I +G RH T+MN+ SSRSH I +++ES +N + SV
Sbjct: 171 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCE-GSVKVSH 229
Query: 1115 LSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG--SQHIPYRNHKLTM 1172
L+ VDLAGSER ++G++G +LKE +IN+SL LG VI LS G I YR+ KLT
Sbjct: 230 LNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTR 289
Query: 1173 LMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN-VSSKEV 1226
++ +SLGGNAKT + ++P + +E+ +L +AS + + N P N VS+ E+
Sbjct: 290 ILQNSLGGNAKTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/347 (36%), Positives = 195/347 (56%), Gaps = 24/347 (6%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTS---LDEFTVEHPWKDDKV--KQHMYDQVFDGYATQ 947
I+V R RP N E ++ E +V DK K + +D VF Q
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 948 EDVFEDTRY-LVQSAVDGYNVCIFAYGQTGSGKTFTI---------YGSECNP--GITPR 995
DV+ ++ + GYN IFAYGQTG+GKTFT+ Y E +P GI PR
Sbjct: 64 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPR 123
Query: 996 AISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD--SKGMVLV 1053
+ ++F K +N FS+K ++E+Y + L DLL P ++ +L++ D +K V++
Sbjct: 124 TLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVII 181
Query: 1054 ENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI---ESTNLQTQSV 1110
+ + + + +E+ I+++G+ +R T+ T MN SSRSH + S+ I E+T + V
Sbjct: 182 KGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELV 241
Query: 1111 ARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKL 1170
GKL+ VDLAGSE + +SG+ + +EA +IN+SL LG VI+AL + H+PYR KL
Sbjct: 242 KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKL 301
Query: 1171 TMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVNDP 1217
T ++ DSLGG +T + +SPA NLEE+ ++L YA R ++I+N P
Sbjct: 302 TRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNKP 348
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 127/361 (35%), Positives = 210/361 (58%), Gaps = 37/361 (10%)
Query: 888 DMKG-KIRVYCRLRPLNEKEDAEKERYVL-TSLDEFTVEHPWKDDKV-KQHMYDQVF--- 941
+M G ++V R+RP N +E + + ++ S T+ +P + + K +D +
Sbjct: 16 NMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSH 75
Query: 942 -----DGYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSE--CNPGIT 993
YA+Q+ V+ D ++Q A +GYNVCIFAYGQTG+GK++T+ G + GI
Sbjct: 76 TSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGII 135
Query: 994 PRAISELF-RILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVL 1052
P+ +LF RI N+ S+S++ +E+Y + + DLL P+N+ L+ +++
Sbjct: 136 PQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR--VREHPLLGPY 193
Query: 1053 VENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIES------TNLQ 1106
VE+++ + ++++ +I+ ++ G+ R + T MNE SSRSH + +I+ TN+
Sbjct: 194 VEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNIT 253
Query: 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SG---- 1159
T+ V+ K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ SG
Sbjct: 254 TEKVS--KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 311
Query: 1160 -----SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIV 1214
+ IPYR+ LT L+ ++LGGN++T M +SPA+ N +E+ ++L YA R + I
Sbjct: 312 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIR 371
Query: 1215 N 1215
N
Sbjct: 372 N 372
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 207/355 (58%), Gaps = 36/355 (10%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL-TSLDEFTVEHPWKDDKV-KQHMYDQVF--------D 942
++V R+RP N +E + + ++ S T+ +P + + K +D +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 943 GYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSE--CNPGITPRAISE 999
YA+Q+ V+ D ++Q A +GYNVCIFAYGQTG+GK++T+ G + GI P+ +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 1000 LF-RILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058
LF RI N+ S+S++ +E+Y + + DLL P+N+ L+ +++ VE+++
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR--VREHPLLGPYVEDLSK 183
Query: 1059 VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIES------TNLQTQSVAR 1112
+ ++++ +I+ ++ G+ R + T MNE SSRSH + +I+ TN+ T+ V+
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS- 242
Query: 1113 GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SG---------S 1160
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ SG +
Sbjct: 243 -KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 1161 QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVN 1215
IPYR+ LT L+ ++LGGN++T M +SPA+ N +E+ ++L YA R + I N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 207/355 (58%), Gaps = 36/355 (10%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL-TSLDEFTVEHPWKDDKV-KQHMYDQVF--------D 942
++V R+RP N +E + + ++ S T+ +P + + K +D +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 943 GYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSE--CNPGITPRAISE 999
YA+Q+ V+ D ++Q A +GYNVCIFAYGQTG+GK++T+ G + GI P+ +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 1000 LF-RILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058
LF RI N+ S+S++ +E+Y + + DLL P+N+ L+ +++ VE+++
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR--VREHPLLGPYVEDLSK 183
Query: 1059 VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIES------TNLQTQSVAR 1112
+ ++++ +I+ ++ G+ R + T MNE SSRSH + +I+ TN+ T+ V+
Sbjct: 184 LAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS- 242
Query: 1113 GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SG---------S 1160
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ SG +
Sbjct: 243 -KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 1161 QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVN 1215
IPYR+ LT L+ ++LGGN++T M +SPA+ N +E+ ++L YA R + I N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg Release
Length = 366
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 207/355 (58%), Gaps = 36/355 (10%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL-TSLDEFTVEHPWKDDKV-KQHMYDQVF--------D 942
++V R+RP N +E + + ++ S T+ +P + + K +D +
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDI 65
Query: 943 GYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSE--CNPGITPRAISE 999
YA+Q+ V+ D ++Q A +GYNVCIFAYGQTG+GK++T+ G + GI P+ +
Sbjct: 66 NYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCED 125
Query: 1000 LF-RILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058
LF RI N+ S+S++ +E+Y + + DLL P+N+ L+ +++ VE+++
Sbjct: 126 LFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLR--VREHPLLGPYVEDLSK 183
Query: 1059 VPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIES------TNLQTQSVAR 1112
+ ++++ +I+ ++ G+ R + T MNE SSRSH + +I+ TN+ T+ V+
Sbjct: 184 LAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVS- 242
Query: 1113 GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS---SG---------S 1160
K+S VDLAGSER +G+ G +LKE +INKSL+ LG VISAL+ SG +
Sbjct: 243 -KISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKT 301
Query: 1161 QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSIVN 1215
IPYR+ LT L+ ++LGGN++T M +SPA+ N +E+ ++L YA R + I N
Sbjct: 302 DFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRN 356
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 201 bits (512), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/340 (37%), Positives = 194/340 (57%), Gaps = 29/340 (8%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL---TSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQED 949
+RV R+RPL KE + L L T+ +D H+ V A QE
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHV---VLAEDAGQEA 66
Query: 950 VFED-TRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGS------ECNPGITPRAISELFR 1002
V++ + L+++ +G+N +FAYGQTGSGKT+T+ + E GI PRA++E F+
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126
Query: 1003 ILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPIS 1062
++ EN+ + +E+Y++ DLL R +++++D +G V++ V V +
Sbjct: 127 LID-ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR-DIQLREDERGNVVLCGVKEVDVE 184
Query: 1063 TFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVAR--------GK 1114
+E+ S+++ G+ RHT T +N SSRSH + ++ +E + R K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSK 244
Query: 1115 LSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQ---HIPYRNHKLT 1171
FVDLAGSERV K+GS+G +LKE+ IN SL ALG+VISAL + HIPYR+ K+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKIT 304
Query: 1172 MLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVR 1211
++ DSLGGNAKT+M VSP+ S+ +E+ N+L YASR +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 200 bits (509), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/356 (35%), Positives = 198/356 (55%), Gaps = 31/356 (8%)
Query: 885 TIEDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKV------------ 932
T ED+ ++V R+RP N KE A V+ +D+ + K ++V
Sbjct: 4 TEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQN 63
Query: 933 ---KQH-----MYDQVFDGYATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983
KQ+ ++D VFD +TQ +VFE T + +++S ++GYN + AYG TG+GKT T+
Sbjct: 64 VIKKQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123
Query: 984 YGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEI 1043
GS PG+ + L++ + + + S +E+Y + + DLL+ L +
Sbjct: 124 LGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNSGP----LAV 179
Query: 1044 KKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVI--- 1100
++D++ V+V +T+ + EEI ++ G+ R T MN SSRSH + I +
Sbjct: 180 REDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239
Query: 1101 ESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG- 1159
+ T Q+V K+S +DLAGSER SG+ G + E +IN+SL ALG+VI+AL+
Sbjct: 240 DKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSK 299
Query: 1160 --SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
+QHIPYRN KLT L+ DSLGGN +T+M VSP+ +++YN+L YA+R + I
Sbjct: 300 RKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 197 bits (500), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/338 (31%), Positives = 197/338 (58%), Gaps = 10/338 (2%)
Query: 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVE-HPWKDDK-VKQHMYDQVFDGYATQED 949
++RV RLRP + + + +D ++E W++ + ++ +D + +TQ+D
Sbjct: 22 RVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQD 81
Query: 950 VFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKEN 1008
++ + + +++ ++G N + AYG TG+GKT T+ GS PG+ PRA+ +L ++ ++E
Sbjct: 82 IYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEG 141
Query: 1009 ---NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFE 1065
++ S+ +E+YQ+ ++DLL P + L I++D +G +L+ ++ PIS+F
Sbjct: 142 AEGRPWALSVTMSYLEIYQEKVLDLLDPASGD---LVIREDCRGNILIPGLSQKPISSFA 198
Query: 1066 EIKSIIQRGSDQRHTSGTQMNEESSRSHLILSI-VIESTNLQTQSVARGKLSFVDLAGSE 1124
+ + S R T++N+ SSRSH +L + V + L GKL +DLAGSE
Sbjct: 199 DFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYLIDLAGSE 258
Query: 1125 RVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKT 1184
+++G+ G +LKE+ +IN SL LG V+ AL+ G +PYR+ KLT L+ DSLGG+A +
Sbjct: 259 DNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHS 318
Query: 1185 LMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVS 1222
++ N++P ++ ++L +A+R + ++N P N S
Sbjct: 319 ILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNES 356
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 192 bits (488), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 192/340 (56%), Gaps = 29/340 (8%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVL---TSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQED 949
+RV R+RPL KE + L L T+ +D H+ V A QE
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHV---VLAEDAGQEA 66
Query: 950 VFED-TRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGS------ECNPGITPRAISELFR 1002
V++ + L+++ +G+N +FAYGQTGSGKT+T+ + E GI PRA++E F+
Sbjct: 67 VYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFK 126
Query: 1003 ILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPIS 1062
++ EN+ + +E+Y++ DLL R +++++D +G V++ V V +
Sbjct: 127 LID-ENDLLDCLVHVSYLEVYKEEFRDLLEVGTASR-DIQLREDERGNVVLCGVKEVDVE 184
Query: 1063 TFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVAR--------GK 1114
+E+ S+++ G+ RHT T +N SSRSH + ++ ++ + R K
Sbjct: 185 GLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSK 244
Query: 1115 LSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQ---HIPYRNHKLT 1171
FVDLAGSERV K+GS+G KE+ IN SL ALG+VISAL + +IPYR+ K+T
Sbjct: 245 FHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKIT 304
Query: 1172 MLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVR 1211
++ DSLGGNAKT+M VSP+ S+ +E+ N+L YASR +
Sbjct: 305 RILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 180 bits (457), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/327 (34%), Positives = 184/327 (56%), Gaps = 39/327 (11%)
Query: 944 YATQEDVFED-TRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFR 1002
YATQE V++ + +GY+ CIFAYGQTGSGK++T+ G+ PG+ PR +LF+
Sbjct: 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQ 173
Query: 1003 IL---KKENNKFSFSLKAYMVELYQDTLVDLLLP--RNEKRLKLEIKKDSKGMVLVENVT 1057
+ + E S+++K E+Y + + DLL P N+ L++++ V+++T
Sbjct: 174 RIASAQDETPNISYNVKVSYFEVYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLT 233
Query: 1058 VVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIEST--NLQTQSVAR--G 1113
VP+ EEI ++ G R + T+MN+ SSRSH + +I+++ +L+T
Sbjct: 234 EVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFTIMLKQIHHDLETDDTTERSS 293
Query: 1114 KLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISAL----SSGSQH------- 1162
++ VDLAGSER K + ++G +L+E +INKSL+ LG VI+AL SS S+
Sbjct: 294 RIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSPVKSG 353
Query: 1163 -----------IPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYAS--- 1208
+PYR+ LT L+ DSLGGN+KT M +SP ++ +E+ ++L YA
Sbjct: 354 RGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISP--TDYDETLSTLRYADQAK 411
Query: 1209 --RVRSIVNDPNKNVSSKEVARLKRLV 1233
R R++VN + +++ A++ +V
Sbjct: 412 RIRTRAVVNQVDGVSAAERDAQIPSIV 438
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex
With Adp
Length = 359
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 109/279 (39%), Positives = 165/279 (59%), Gaps = 12/279 (4%)
Query: 945 ATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECN---PGITPRAISEL 1000
A+Q+ V+E + +V A+DGYN I YGQTG+GKT+T+ G+ N GI PRA+ ++
Sbjct: 83 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQV 142
Query: 1001 FRILKKENNKFSFSLKAYMVELYQDTLVDLL--LPR-NEKRLKLEIKKDSKGMVLVENVT 1057
FR+++ E + +++ +E+Y ++L DLL LP + I ++ +G V ++ ++
Sbjct: 143 FRMIE-ERPTHAITVRVSYLEIYNESLFDLLSTLPYVGPSVTPMTIVENPQG-VFIKGLS 200
Query: 1058 VVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIE--STNLQTQSVARGKL 1115
V S E+ S++ G R + MN+ SSRSH I +I +E S L + K+
Sbjct: 201 VHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKI 260
Query: 1116 SFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQ-HIPYRNHKLTMLM 1174
+ VDLAGSER+ KSGS G LKEA INKSLS L I AL + HIP+R KLT +
Sbjct: 261 NLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHAL 320
Query: 1175 SDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
DSLGGN ++ N+ + LEE+ +SL +ASR++ +
Sbjct: 321 KDSLGGNCNMVLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex
With Adp
Length = 420
Score = 166 bits (419), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 117/340 (34%), Positives = 175/340 (51%), Gaps = 27/340 (7%)
Query: 892 KIRVYCRLRPLNEKEDAEKERYVLT--SLDEFTVEHPWKDDKVKQHM------YDQVFDG 943
+I V R RPLN+KE K+ V+T S D V P + + +++ +D FD
Sbjct: 90 RICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDD 149
Query: 944 YATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------SECNPGITPRA 996
A E V+ T R LV++ + FAYGQTGSGKT T+ G +C+ GI A
Sbjct: 150 SAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALA 209
Query: 997 ISELFRILKKEN-NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVEN 1055
++F +LKK N K + A E+Y + DLL ++ KL + +D K V V
Sbjct: 210 ARDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLL----NRKTKLRVLEDGKQQVQVVG 265
Query: 1056 VTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKL 1115
+ + E++ +I G+ R + T N SSRSH + I+ L+ + GK
Sbjct: 266 LQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQII-----LRRKGKLHGKF 320
Query: 1116 SFVDLAGSERVKKSGSSGNQLK-EAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLM 1174
S +DLAG+ER + S+ Q + E INKSL AL + I AL H P+R KLT ++
Sbjct: 321 SLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVL 380
Query: 1175 SDS-LGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
DS +G N++T M +SP ++ E + N+L YA+RV+ +
Sbjct: 381 RDSFIGENSRTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 119/339 (35%), Positives = 186/339 (54%), Gaps = 29/339 (8%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFT--VEHP-WKDDKVK-----QHMYDQVFDGY 944
I+V R RPL+E E +K+ ++T + T ++ P +K D K + + D+VFD
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 945 ATQEDVFEDT-RYLVQSAVDGYNVC-IFAYGQTGSGKTFTI-----YGSECNPGITPRAI 997
V+E+T + L+ + VC FAYGQTGSGKT+T+ YG PGI A
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAA 121
Query: 998 SELFRILK---KENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVE 1054
++F L K+N K F E+Y L DLL +KR + ++ K V+V+
Sbjct: 122 GDIFTFLNIYDKDNTKGIF---ISFYEIYCGKLYDLL----QKRKMVAALENGKKEVVVK 174
Query: 1055 NVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGK 1114
++ ++ + T EE+ + G R N+ESSRSH IL+I ++ N T + GK
Sbjct: 175 DLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNT---SLGK 231
Query: 1115 LSFVDLAGSERVKKSGSSGNQLK-EAQSINKSLSALGDVISALSSGSQHIPYRNHKLTML 1173
++F+DLAGSER + S Q + + +IN+SL AL + I A+ S HIP+R+ +LT +
Sbjct: 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKV 291
Query: 1174 MSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRS 1212
+ D G +K++M N+SP S E++ N+L Y+SRV++
Sbjct: 292 LRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 121/341 (35%), Positives = 177/341 (51%), Gaps = 29/341 (8%)
Query: 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDE--FTVEHP-WKDDKVK-----QHMYDQVFDG 943
+I V R RPLN++E A+KE V++ + V P K D K +D FD
Sbjct: 72 RICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 131
Query: 944 YATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------SECNPGITPRA 996
A+ E V+ T R LVQ+ +G FAYGQTGSGKT T+ G + GI A
Sbjct: 132 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMA 191
Query: 997 ISELFRILKKENNKFSFSLKAYMV--ELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVE 1054
++F +LK + + +L+ Y+ E+Y + DLL K+ KL + +DS+ V V
Sbjct: 192 SRDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKAKLRVLEDSRQQVQVV 246
Query: 1055 NVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGK 1114
+ ++ +++ +I GS R + T N SSRSH I+ L+T+ GK
Sbjct: 247 GLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL-----LRTKGRLHGK 301
Query: 1115 LSFVDLAGSERVKKSGSSGNQLK-EAQSINKSLSALGDVISALSSGSQHIPYRNHKLTML 1173
S VDLAG+ER + S+ Q + E INKSL AL + I AL H P+R KLT +
Sbjct: 302 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 361
Query: 1174 MSDS-LGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
+ DS +G N++T M +SP S+ E + N+L YA RV+ +
Sbjct: 362 LRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 176/340 (51%), Gaps = 29/340 (8%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLT--SLDEFTVEHP-WKDDKVK-----QHMYDQVFDGY 944
I V R RPLN++E A+KE V++ S V P K D K +D FD
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 945 ATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------SECNPGITPRAI 997
A+ E V+ T R LVQ+ +G FAYGQTGSGKT T+ G + GI A
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 998 SELFRILKKENNKFSFSLKAYMV--ELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVEN 1055
++F +LK + + +L+ Y+ E+Y + DLL K+ KL + +DS+ V V
Sbjct: 121 RDVF-LLKNQPRYRNLNLEVYVTFFEIYNGKVFDLL----NKKAKLRVLEDSRQQVQVVG 175
Query: 1056 VTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKL 1115
+ ++ +++ +I GS R + T N SSRSH I+ L+T+ GK
Sbjct: 176 LQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQIL-----LRTKGRLHGKF 230
Query: 1116 SFVDLAGSERVKKSGSSGNQLK-EAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLM 1174
S VDLAG+ER + S+ Q + E INKSL AL + I AL H P+R KLT ++
Sbjct: 231 SLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVL 290
Query: 1175 SDS-LGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
DS +G N++T M +SP S+ E + N+L YA RV+ +
Sbjct: 291 RDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 154 bits (389), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 122/341 (35%), Positives = 174/341 (51%), Gaps = 29/341 (8%)
Query: 892 KIRVYCRLRPLNEKEDAEKERYVLT--SLDEFTVEHP-WKDDKVK-----QHMYDQVFDG 943
+I V R RPLN++E A+KE V++ S V P K D K +D FD
Sbjct: 52 RICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDE 111
Query: 944 YATQEDVFEDT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG------SECNPGITPRA 996
A+ E V+ T R LVQ+ +G FAYGQTGSGKT T+ G + GI A
Sbjct: 112 TASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMA 171
Query: 997 ISELFRILKKENNKFSFSLKAYMV--ELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVE 1054
++F +LK + L+ Y+ E+Y L DLL K+ KL + +D K V V
Sbjct: 172 SRDVF-LLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL----NKKAKLRVLEDGKQQVQVV 226
Query: 1055 NVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGK 1114
+ +++ +++ +I GS R + T N SSRSH I+ L+ + GK
Sbjct: 227 GLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQII-----LRAKGRMHGK 281
Query: 1115 LSFVDLAGSERVKKSGSSGNQLK-EAQSINKSLSALGDVISALSSGSQHIPYRNHKLTML 1173
S VDLAG+ER + S+ Q + E INKSL AL + I AL H P+R KLT +
Sbjct: 282 FSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQV 341
Query: 1174 MSDS-LGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213
+ DS +G N++T M +SP S+ E + N+L YA RV+ +
Sbjct: 342 LRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKEL 382
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 138 bits (348), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 128/238 (53%), Gaps = 11/238 (4%)
Query: 893 IRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFE 952
I+V CR RPLNE E ++++ +F E + K +++D+V TQE V+
Sbjct: 8 IKVMCRFRPLNEAEILRGDKFI----PKFKGEETVVIGQGKPYVFDRVLPPNTTQEQVYN 63
Query: 953 DT-RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNP---GITPRAISELFRILKKEN 1008
+ +V+ ++GYN IFAYGQT SGKT T+ G +P GI PR ++F + +
Sbjct: 64 ACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIYSMD 123
Query: 1009 NKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIK 1068
F +K E+Y D + DLL + + L + +D + V+ T +S+ EE+
Sbjct: 124 ENLEFHIKVSYFEIYLDKIRDLL---DVSKTNLAVHEDKNRVPYVKGCTERFVSSPEEVM 180
Query: 1069 SIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERV 1126
+I G RH + T MNE SSRSH I I I+ N++T+ GKL VDLAGSE+V
Sbjct: 181 DVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVETEKKLSGKLYLVDLAGSEKV 238
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked Into
The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 85/306 (27%), Positives = 155/306 (50%), Gaps = 39/306 (12%)
Query: 926 PWKDDK---VKQH--MYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCIFAYGQTGSGK 979
PW D K V Q+ +D F +Q+++++ LV ++G+ AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 980 TFTI---YGSECNP---GITPRAISELFR--ILKKENNKFSFSLKAYMVELYQDTLVDLL 1031
++++ E P GI PRA+ ++F ++ENNK + + A +E+Y + DLL
Sbjct: 109 SYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
Query: 1032 -----LPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMN 1086
+P R + T +P+ + ++ I++ G+ R T MN
Sbjct: 169 GSTPHMPMVAAR--------------CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 1087 EESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSL 1146
SSRSH I++I ++S + +++ VDLAGSE V+++G G +E +IN L
Sbjct: 215 SNSSRSHAIVTIHVKSKTHHS------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 1147 SALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTY 1206
++ V+ ++++G IPYR+ LT ++ SL + +SP + +L E+ ++L +
Sbjct: 269 LSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 1207 ASRVRS 1212
+ ++
Sbjct: 329 GTSAKA 334
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 155/307 (50%), Gaps = 39/307 (12%)
Query: 926 PWKDDK---VKQH--MYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCIFAYGQTGSGK 979
PW D K V Q+ +D F +Q+++++ LV ++G+ AYGQTG+GK
Sbjct: 49 PWSDGKSLIVDQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGK 108
Query: 980 TFTI---YGSECNP---GITPRAISELFR--ILKKENNKFSFSLKAYMVELYQDTLVDLL 1031
++++ E P GI PRA+ ++F ++ENNK + + A +E+Y + DLL
Sbjct: 109 SYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLL 168
Query: 1032 -----LPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMN 1086
+P R + T +P+ + ++ I++ G+ R T MN
Sbjct: 169 GSTPHMPMVAAR--------------CQRCTCLPLHSQADLHHILELGTRNRRVRPTNMN 214
Query: 1087 EESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSL 1146
SSRSH I++I ++S + +++ VDLAGSE V+++G G +E +IN L
Sbjct: 215 SNSSRSHAIVTIHVKSKTHHS------RMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 1147 SALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTY 1206
++ V+ ++++G IPYR+ LT ++ SL + +SP + +L E+ ++L +
Sbjct: 269 LSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 1207 ASRVRSI 1213
+ + +
Sbjct: 329 GTSAKKL 335
>pdb|3PZD|A Chain A, Structure Of The Myosin X Myth4-FermDCC COMPLEX
Length = 511
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/438 (20%), Positives = 199/438 (45%), Gaps = 51/438 (11%)
Query: 183 LRDELFAQISKQTRNNPDRQCL--IKAWELMYLCASSMPPSKDMGGYLTEYVHNVAQGII 240
LRDEL+ Q+ KQT P + + +W+++ + + PS+ + YL ++ + +
Sbjct: 102 LRDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRGILKYLKFHLKRIREQFP 161
Query: 241 IDSEVQTLALNTLNALKRSVKAGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEISYD 300
SE++ AL T +LK K R +P R+EIEAL+ +++T+ V+ +I+ +
Sbjct: 162 -GSEMEKYALFTYESLK---KTKCREFVPSRDEIEALIHRQEMTSTVYCHGGGSCKITIN 217
Query: 301 MATTVSDAVEELA-GIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLL 359
TT + VE+L G+ + + F+LFE V + ++ + D+L
Sbjct: 218 SHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKA------------IESRTVVADVL 265
Query: 360 AEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRD 419
A+F+ S+ L K FK F ++D + + + Q + G++P +
Sbjct: 266 AKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEE 325
Query: 420 DAAQLSALQI------------------LVEIGFVGSPESCNDWTSLLERFLPRQVAITR 461
+ L+AL++ + + + + S + T +L+ ++ +V+ R
Sbjct: 326 NLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTQMLDMWIKEEVSSAR 385
Query: 462 AKREWELDILSRYRSMEHLTKDDARQQFLRILRTLP-YGNSVFFSVRKIDDPIGLLPGRI 520
A I+ ++R + + ++ A +++ +++ P YG+++F ++ G P +
Sbjct: 386 A------SIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLF----DVECKEGGFPQEL 435
Query: 521 VLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETKQGEE 580
LG++ V ++ L + I+ FG+ + + ++ FET + +
Sbjct: 436 WLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTY---KIVVDERELLFETSEVVD 492
Query: 581 ICVALQTHINDVMLRRYS 598
+ ++ +I+ ++ +RYS
Sbjct: 493 VAKLMKAYISMIVKKRYS 510
>pdb|3AU4|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette Bound
To Its Specific Cargo, Dcc
pdb|3AU5|A Chain A, Structure Of The Human Myosin-X Myth4-Ferm Cassette
pdb|3AU5|B Chain B, Structure Of The Human Myosin-X Myth4-Ferm Cassette
Length = 555
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 99/455 (21%), Positives = 202/455 (44%), Gaps = 55/455 (12%)
Query: 183 LRDELFAQISKQTRNNPDRQCL--IKAWELMYLCASSMPPSKDMGGYLTEYVHNVAQGII 240
LRDEL+ Q+ KQT P + + +W+++ + + PS+ + YL ++ + +
Sbjct: 119 LRDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRGILKYLKFHLKRIREQFP 178
Query: 241 IDSEVQTLALNTLNALKRSVKAGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEISYD 300
+E++ AL T +LK K R +P R+EIEAL+ +++T+ V+ +I+ +
Sbjct: 179 -GTEMEKYALFTYESLK---KTKCREFVPSRDEIEALIHRQEMTSTVYCHGGGSCKITIN 234
Query: 301 MATTVSDAVEELA-GIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLL 359
TT + VE+L G+ + + F+LFE V + ++ + D+L
Sbjct: 235 SHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKA------------IESRTVVADVL 282
Query: 360 AEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRD 419
A+F+ S+ L K FK F ++D + + + Q + G++P +
Sbjct: 283 AKFEKLAATSEVGDLPWKFYFKLYCFLDTDNVPKDSVEFAFMFEQAHEAVIHGHHPAPEE 342
Query: 420 DAAQLSALQILVEIG------FVGSPESCNDWTSLLER-------FLPRQVAITRAKREW 466
+ L+AL++ G + E L R F R ++ R K E
Sbjct: 343 NLQVLAALRLQYLQGDYTLHAAIPPLEEVYSLQRLKARISQSTKTFSFRTGSVVRQKVEE 402
Query: 467 E--LD-------------ILSRYRSMEHLTKDDARQQFLRILRTLP-YGNSVFFSVRKID 510
E LD I+ ++R + + ++ A +++ +++ P YG+++F ++
Sbjct: 403 EQMLDMWIKEEVSSARASIIDKWRKFQGMNQEQAMAKYMALIKEWPGYGSTLF----DVE 458
Query: 511 DPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHI 570
G P + LG++ V ++ L + I+ FG+ + + ++
Sbjct: 459 CKEGGFPQELWLGVSADAVSVYKRGEGRPLEVFQYEHILSFGAPLANTY---KIVVDERE 515
Query: 571 FQFETKQGEEICVALQTHINDVMLRRYSKARSAAT 605
FET + ++ ++ +I+ ++ +RYS RSA++
Sbjct: 516 LLFETSEVVDVAKLMKAYISMIVKKRYSTTRSASS 550
>pdb|3PVL|A Chain A, Structure Of Myosin Viia Myth4-Ferm-Sh3 In Complex With
The Cen1 Of Sans
Length = 655
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 164/383 (42%), Gaps = 40/383 (10%)
Query: 160 PPSLDERIDFVGKLYKHTLKRVELRDELFAQISKQTRNNPDRQCLIKAWELMYLCASSMP 219
P S E++ F+ + + R LRDE++ QISKQ +NP + + W L+ LC
Sbjct: 153 PTSNLEKLHFI---IGNGILRPALRDEIYCQISKQLTHNPSKSSYARGWILVSLCVGCFA 209
Query: 220 PSKDMGGYLTEYVHNVAQGIIIDSEVQTLALNTLNALKRSVKAGPRHTIPGREEIEALLT 279
PS+ YL ++H G E + L+R+ G R P E++A +
Sbjct: 210 PSEKFVKYLRNFIHGGPPGYAPYCEER---------LRRTFVNGTRTQPPSWLELQATKS 260
Query: 280 GRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFEC--RKVVTGSK 337
+ + V F+D T + + D ATT + LA I L FSL+ KV +
Sbjct: 261 KKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGS 320
Query: 338 ASDHDNEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMF 397
SDH + D + A+ + A++R+ +L F+K++F + +
Sbjct: 321 GSDH-------VMDAISQCEQYAKEQGAQERNA----PWRLFFRKEVFTPWHNPSEDNVA 369
Query: 398 VQLSYVQLQHDYVLGNYPVGR-DDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLP-R 455
L Y Q+ G Y + DD A+L++ Q V+ GS SL+ ++P R
Sbjct: 370 TNLIYQQVVRGVKFGEYRCEKEDDLAELASQQYFVD---YGSEMILERLLSLVPTYIPDR 426
Query: 456 QVAITRAKREW-ELDILSRYRSMEHLTKDDARQ------QFLRILRTLPYGNSVFFSVRK 508
++ + +W +L I + + + + D+++ + R L + S F+ K
Sbjct: 427 EITPLKNLEKWAQLAIAAHKKGIYAQRRTDSQKVKEDVVNYARFKWPLLF--SRFYEAYK 484
Query: 509 IDDPIGLLPGRIVLGINKRGVHF 531
P L +++ +N GV+F
Sbjct: 485 FSGP-PLPKSDVIVAVNWTGVYF 506
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 37/84 (44%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 1139 AQSINKSLSALGDVISALSSGSQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNL 1197
A++INKSLSALG+VISAL+ G++ H+PYR+ K+T ++ DSL GN +T + + SP+ N
Sbjct: 1 AKNINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNE 60
Query: 1198 EESYNSLTYASRVRSIVNDPNKNV 1221
E+ ++L + R ++I N + N+
Sbjct: 61 AETKSTLMFGQRAKTIKNTVSVNL 84
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 57/80 (71%), Gaps = 1/80 (1%)
Query: 1143 NKSLSALGDVISALSSGSQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESY 1201
NKSLSALG+VISAL+ G++ H+PYR+ K+T ++ DSLGGN +T + + SP+ N E+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETK 60
Query: 1202 NSLTYASRVRSIVNDPNKNV 1221
++L + R ++I N + N+
Sbjct: 61 STLMFGQRAKTIKNTVSVNL 80
>pdb|3IVF|A Chain A, Crystal Structure Of The Talin Head Ferm Domain
Length = 371
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 142/308 (46%), Gaps = 33/308 (10%)
Query: 290 LDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGL 349
LD T + I D + TV+D + + I ++ H +SL R+++ K ++E L
Sbjct: 93 LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSL--VRELMEEKK-----DDELNWL 145
Query: 350 DDNKYIGDLLAEFKAAKDRSKGEILHCKLTFKKKLFRESDEAIS--EPMFVQLSYVQLQH 407
D + + R +G H L ++K F SD+ + +P+ + L YVQ +
Sbjct: 146 DHGRTL------------REQGVEEHETLLLRRKFFY-SDQNVDSRDPVQLNLLYVQARD 192
Query: 408 DYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWE 467
D + G++PV D A + + Q ++ G + + L+ FLP++ + +R+
Sbjct: 193 DILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLD-LKDFLPKEYVKQKGERK-- 249
Query: 468 LDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDPIGLLPGRIVLGINK 526
I +++ +++ +A+ +++++ R+L YG S F K+ L+P +LGI K
Sbjct: 250 --IFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPR--LLGITK 305
Query: 527 RGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLH-IFQFETKQGEEICVAL 585
V KE + L +I ++ +S + F + + +T +GE+I +
Sbjct: 306 ECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FTLDFGDYQDGYYSVQTTEGEQIAQLI 363
Query: 586 QTHINDVM 593
+I+ ++
Sbjct: 364 AGYIDIIL 371
>pdb|4F7G|A Chain A, Crystal Structure Of Talin Autoinhibition Complex
Length = 222
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 100/205 (48%), Gaps = 12/205 (5%)
Query: 394 EPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFL 453
+P+ + L YVQ + D + G++PV D A + + Q ++ G + + L+ FL
Sbjct: 25 DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLD-LKDFL 83
Query: 454 PRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDP 512
P++ + +R+ I +++ +++ +A+ +++++ R+L YG S F K+
Sbjct: 84 PKEYVKQKGERK----IFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGK 139
Query: 513 IGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLH-IF 571
L+P +LGI K V KE + L +I ++ +S + F + +
Sbjct: 140 NKLVPR--LLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FTLDFGDYQDGYY 195
Query: 572 QFETKQGEEICVALQTHINDVMLRR 596
+T +GE+I + +I D++L++
Sbjct: 196 SVQTTEGEQIAQLIAGYI-DIILKK 219
>pdb|1Y19|B Chain B, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|D Chain D, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|F Chain F, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|H Chain H, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|J Chain J, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
pdb|1Y19|L Chain L, Structural Basis For Phosphatidylinositol Phosphate Kinase
Type I-Gamma Binding To Talin At Focal Adhesions
Length = 202
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 100/207 (48%), Gaps = 11/207 (5%)
Query: 395 PMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLP 454
P+ + L YVQ + D + G++PV D A + + Q ++ G + + L + FLP
Sbjct: 1 PVQLNLLYVQARDDILNGSHPVSFDKACEFAGFQCQIQFGPHNEQKHKAGFLDLKD-FLP 59
Query: 455 RQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDPI 513
++ + +R+ I +++ +++ +A+ +++++ R+L YG S F K+
Sbjct: 60 KEYVKQKGERK----IFQAHKNCGQMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKN 115
Query: 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLH-IFQ 572
L+P +LGI K V KE + L +I ++ +S + F + +
Sbjct: 116 KLVPR--LLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FTLDFGDYQDGYYS 171
Query: 573 FETKQGEEICVALQTHINDVMLRRYSK 599
+T +GE+I + +I+ ++ ++ SK
Sbjct: 172 VQTTEGEQIAQLIAGYIDIILKKKKSK 198
>pdb|1MIX|A Chain A, Crystal Structure Of A Ferm Domain Of Talin
Length = 206
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 103/213 (48%), Gaps = 13/213 (6%)
Query: 385 FRESDEAIS--EPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESC 442
F SD+ + +P+ + L YVQ + D + G++PV D A + + Q ++ G +
Sbjct: 3 FFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHK 62
Query: 443 NDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNS 501
+ L+ FLP++ + +R+ I +++ ++++ +A+ +++++ R+L YG S
Sbjct: 63 PGFLE-LKDFLPKEYIKQKGERK----IFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVS 117
Query: 502 VFFSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFK 561
F K+ L+P +LGI K V KE + L +I ++ +S + F
Sbjct: 118 FFLVKEKMKGKNKLVPR--LLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FT 173
Query: 562 MRVAGVLH-IFQFETKQGEEICVALQTHINDVM 593
+ + +T +GE+I + +I+ ++
Sbjct: 174 LDFGDYQDGYYSVQTTEGEQIAQLIAGYIDIIL 206
>pdb|1MIZ|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 201
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 98/202 (48%), Gaps = 11/202 (5%)
Query: 394 EPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFL 453
+P+ + L YVQ + D + G++PV D A + + Q ++ G + + L+ FL
Sbjct: 9 DPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLE-LKDFL 67
Query: 454 PRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDP 512
P++ + +R+ I +++ ++++ +A+ +++++ R+L YG S F K+
Sbjct: 68 PKEYIKQKGERK----IFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGK 123
Query: 513 IGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLH-IF 571
L+P +LGI K V KE + L +I ++ +S + F + +
Sbjct: 124 NKLVPR--LLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FTLDFGDYQDGYY 179
Query: 572 QFETKQGEEICVALQTHINDVM 593
+T +GE+I + +I+ ++
Sbjct: 180 SVQTTEGEQIAQLIAGYIDIIL 201
>pdb|1MK7|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK7|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|B Chain B, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|D Chain D, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|F Chain F, Crystal Structure Of An Integrin Beta3-Talin Chimera
pdb|1MK9|H Chain H, Crystal Structure Of An Integrin Beta3-Talin Chimera
Length = 192
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 97/201 (48%), Gaps = 11/201 (5%)
Query: 395 PMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLP 454
P+ + L YVQ + D + G++PV D A + + Q ++ G + + L+ FLP
Sbjct: 1 PVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGPHNEQKHKPGFLE-LKDFLP 59
Query: 455 RQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDPI 513
++ + +R+ I +++ ++++ +A+ +++++ R+L YG S F K+
Sbjct: 60 KEYIKQKGERK----IFMAHKNCGNMSEIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKN 115
Query: 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLH-IFQ 572
L+P +LGI K V KE + L +I ++ +S + F + +
Sbjct: 116 KLVPR--LLGITKECVMRVDEKTKEVIQEWSLTNIKRWAASPKS--FTLDFGDYQDGYYS 171
Query: 573 FETKQGEEICVALQTHINDVM 593
+T +GE+I + +I+ ++
Sbjct: 172 VQTTEGEQIAQLIAGYIDIIL 192
>pdb|3G9W|A Chain A, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
pdb|3G9W|B Chain B, Crystal Structure Of Talin2 F2-f3 In Complex With The
Integrin Beta1d Cytoplasmic Tail
Length = 223
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 101/219 (46%), Gaps = 11/219 (5%)
Query: 380 FKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSP 439
F K + + + +P+ + L YVQ + D + G++PV + A + Q ++ G
Sbjct: 11 FTKFFYSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFGGFQAQIQFGPHVEH 70
Query: 440 ESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PY 498
+ + L E FLP++ R E I +++ +++ +A+ +++++ R+L Y
Sbjct: 71 KHKPGFLDLKE-FLPKEYIKQRGA---EKRIFQEHKNCGEMSEIEAKVKYVKLARSLRTY 126
Query: 499 GNSVFFSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAV 558
G S F K+ L+P +LGI K V KE L L + ++ +S +
Sbjct: 127 GVSFFLVKEKMKGKNKLVPR--LLGITKDSVMRVDEKTKEVLQEWPLTTVKRWAASPKS- 183
Query: 559 FFKMRVAGVLH-IFQFETKQGEEICVALQTHINDVMLRR 596
F + + +T +GE+I + +I D++L++
Sbjct: 184 -FTLDFGEYQESYYSVQTTEGEQISQLIAGYI-DIILKK 220
>pdb|2HRJ|A Chain A, Nmr Solution Structure Of The F2 Subdomain Of Talin
Length = 121
Score = 38.9 bits (89), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 378 LTFKKKLFRESDEAIS--EPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGF 435
L ++K F SD+ + +P+ + L YVQ + D + G++PV D A + + Q ++ G
Sbjct: 3 LLLRRKFFY-SDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFDKACEFAGYQCQIQFGP 61
Query: 436 VGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRT 495
+ + L + FLP++ K++ E I +++ ++++ +A+ +++++ R+
Sbjct: 62 HNEQKHKPGFLELKD-FLPKEY----IKQKGERKIFMAHKNCGNMSEIEAKVRYVKLARS 116
Query: 496 L 496
L
Sbjct: 117 L 117
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 450 ERFLPRQVA--ITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVR 507
E LP++V WE I + Y +D+A ++L+I + L +F++R
Sbjct: 167 EELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR 226
Query: 508 KIDDPIGLLPGRIVLGINKRGVHFFRP----VPKEYLHSAELRDI 548
++LG++ G+H + P PK E+R+I
Sbjct: 227 NKKG------TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNI 265
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 450 ERFLPRQVA--ITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVR 507
E LP++V WE I + Y +D+A ++L+I + L +F++R
Sbjct: 167 EELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR 226
Query: 508 KIDDPIGLLPGRIVLGINKRGVHFFRP----VPKEYLHSAELRDI 548
++LG++ G+H + P PK E+R+I
Sbjct: 227 NKKG------TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNI 265
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 450 ERFLPRQVA--ITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVR 507
E LP++V WE I + Y +D+A ++L+I + L +F++R
Sbjct: 154 EELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFAIR 213
Query: 508 KIDDPIGLLPGRIVLGINKRGVHFFRP----VPKEYLHSAELRDI 548
++LG++ G+H + P PK E+R+I
Sbjct: 214 NKKG------TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNI 252
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 12/105 (11%)
Query: 450 ERFLPRQVA--ITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVR 507
E LP++V WE I + Y +D+A ++L+I + L +F++R
Sbjct: 149 EELLPKRVINLYQMTPEMWEERITAWYAEHRGRARDEAEMEYLKIAQDLEMYGVNYFTIR 208
Query: 508 KIDDPIGLLPGRIVLGINKRGVHFFRP----VPKEYLHSAELRDI 548
++LG++ G+H + P PK E+R+I
Sbjct: 209 NKKG------TELLLGVDALGLHIYDPENRLTPKISFPWNEIRNI 247
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
Domain At 3.0 Angstrom Resolution
Length = 575
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 51/105 (48%), Gaps = 12/105 (11%)
Query: 450 ERFLPRQVAITR--AKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVR 507
+R LP++V ++ EWE I + ++ + ++DA ++L+I + L +F +R
Sbjct: 150 DRLLPQRVTDQHKMSREEWEQSITNWWQEHRGMLREDAMMEYLKIAQDLEMYGVNYFEIR 209
Query: 508 KIDDPIGLLPGRIVLGINKRGVHFF----RPVPKEYLHSAELRDI 548
+ + LG++ G++ + + PK +E+R+I
Sbjct: 210 NKKN------TELWLGVDALGLNIYEKDDKLTPKIGFPWSEIRNI 248
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 31.6 bits (70), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 484 DARQQFLRILRTLPYG--NSVFFSVRKIDDPIGLLPGRIVLGINKRG--VHFFRPVPKEY 539
D+ Q+FL ++R+ P G NS +F DP+ LP + KRG + F+ P +
Sbjct: 295 DSEQRFLWVIRS-PSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVL 353
Query: 540 LHSAELRDIMQFGSSNSAVFFKMRVAGV-LHIFQFETKQ-------GEEICVALQTHIND 591
H + + G +++ + V+G+ L + +Q E+I AL+ D
Sbjct: 354 AHPSTGGFLTHCGWNST---LESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGD 410
Query: 592 VMLRRYSKARSAATGSVNGDLSNNVKTHSIELFE 625
L R + G + G+ V+ EL E
Sbjct: 411 DGLVRREEVARVVKGLMEGEEGKGVRNKMKELKE 444
>pdb|2GO5|5 Chain 5, Structure Of Signal Recognition Particle Receptor (Sr) In
Complex With Signal Recognition Particle (Srp) And
Ribosome Nascent Chain Complex
pdb|2J37|5 Chain 5, Model Of Mammalian Srp Bound To 80s Rncs
pdb|3IZR|CC Chain c, Localization Of The Large Subunit Ribosomal Proteins Into A
5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 124
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 1122 GSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTML 1173
G R++K SSG++L I KS++ + VI+A + Y+N K L
Sbjct: 31 GQLRIQKVASSGSKLNRIHDIRKSIARVLTVINAKQRAQLRLFYKNKKYAPL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,867,046
Number of Sequences: 62578
Number of extensions: 1318148
Number of successful extensions: 4554
Number of sequences better than 100.0: 131
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 4145
Number of HSP's gapped (non-prelim): 210
length of query: 1268
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1158
effective length of database: 8,089,757
effective search space: 9367938606
effective search space used: 9367938606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)