Query 000820
Match_columns 1268
No_of_seqs 688 out of 3968
Neff 8.7
Searched_HMMs 46136
Date Tue Apr 2 00:02:41 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000820.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000820hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280 Kinesin-like protein [ 100.0 1.5E-81 3.4E-86 725.7 24.8 349 890-1240 4-365 (574)
2 KOG0243 Kinesin-like protein [ 100.0 2.1E-81 4.6E-86 751.8 26.1 357 891-1249 49-436 (1041)
3 KOG0239 Kinesin (KAR3 subfamil 100.0 7.5E-79 1.6E-83 733.2 47.1 420 820-1241 243-669 (670)
4 KOG0245 Kinesin-like protein [ 100.0 6.1E-81 1.3E-85 728.9 22.2 350 891-1242 4-379 (1221)
5 KOG0240 Kinesin (SMY1 subfamil 100.0 6.4E-77 1.4E-81 663.1 23.8 330 889-1222 5-340 (607)
6 PLN03188 kinesin-12 family pro 100.0 3.3E-74 7.1E-79 695.0 35.6 339 890-1239 97-468 (1320)
7 cd01370 KISc_KIP3_like Kinesin 100.0 1.2E-73 2.7E-78 656.1 32.1 319 892-1213 1-338 (338)
8 KOG0242 Kinesin-like protein [ 100.0 1.9E-73 4E-78 690.3 25.8 329 890-1223 5-341 (675)
9 cd01373 KISc_KLP2_like Kinesin 100.0 3E-72 6.5E-77 644.4 32.9 317 891-1213 1-337 (337)
10 cd01368 KISc_KIF23_like Kinesi 100.0 1.1E-71 2.4E-76 641.0 32.7 315 891-1211 1-345 (345)
11 KOG0241 Kinesin-like protein [ 100.0 1.7E-72 3.7E-77 643.1 25.5 351 891-1242 4-382 (1714)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4.6E-71 1E-75 641.1 34.4 330 891-1220 1-356 (356)
13 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.7E-69 7.9E-74 625.8 35.1 329 891-1221 2-351 (352)
14 cd01367 KISc_KIF2_like Kinesin 100.0 2.1E-69 4.5E-74 617.7 31.6 312 891-1211 1-322 (322)
15 cd01376 KISc_KID_like Kinesin 100.0 1.5E-68 3.2E-73 610.6 31.7 312 892-1211 1-319 (319)
16 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.8E-68 6E-73 612.2 34.1 319 891-1213 2-325 (325)
17 cd01371 KISc_KIF3 Kinesin moto 100.0 3E-68 6.4E-73 611.9 33.8 320 891-1213 1-333 (333)
18 cd01366 KISc_C_terminal Kinesi 100.0 1.4E-67 2.9E-72 608.3 35.0 326 890-1216 1-329 (329)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 1.3E-67 2.9E-72 611.4 33.1 319 892-1214 2-341 (341)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 1.5E-67 3.3E-72 604.3 32.2 315 892-1213 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 5.1E-67 1.1E-71 601.2 32.9 314 892-1211 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 6.5E-65 1.4E-69 588.7 34.0 326 892-1220 1-335 (335)
23 KOG0246 Kinesin-like protein [ 100.0 1.8E-64 3.9E-69 559.9 27.6 322 890-1218 207-546 (676)
24 PF00225 Kinesin: Kinesin moto 100.0 7.2E-64 1.6E-68 581.1 25.7 316 898-1213 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 3.4E-64 7.3E-69 574.5 22.0 331 887-1220 27-443 (809)
26 cd00106 KISc Kinesin motor dom 100.0 1.1E-62 2.4E-67 569.4 34.3 318 892-1211 1-328 (328)
27 KOG0244 Kinesin-like protein [ 100.0 1E-62 2.3E-67 581.2 7.7 353 899-1258 1-367 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 2.5E-56 5.3E-61 539.0 27.7 341 888-1239 19-365 (568)
29 cd01363 Motor_domain Myosin an 100.0 5.8E-46 1.3E-50 391.0 18.5 176 950-1192 8-186 (186)
30 KOG0248 Cytoplasmic protein Ma 100.0 2.1E-41 4.6E-46 380.1 16.4 402 114-604 489-909 (936)
31 smart00139 MyTH4 Domain in Myo 100.0 3.2E-38 6.9E-43 312.1 14.0 143 119-278 1-144 (144)
32 PF00784 MyTH4: MyTH4 domain; 100.0 5.6E-31 1.2E-35 252.3 7.0 113 166-278 2-114 (114)
33 KOG3530 FERM domain protein EH 100.0 2.7E-29 5.9E-34 283.3 21.2 284 279-599 7-295 (616)
34 smart00295 B41 Band 4.1 homolo 100.0 1.9E-28 4.1E-33 265.5 18.3 203 281-504 2-207 (207)
35 KOG3529 Radixin, moesin and re 99.9 1.6E-23 3.5E-28 248.6 13.0 299 281-610 12-318 (596)
36 KOG4261 Talin [Cytoskeleton] 99.9 6E-24 1.3E-28 243.4 5.6 301 285-601 87-406 (1003)
37 KOG0792 Protein tyrosine phosp 99.9 4.2E-21 9E-26 229.7 18.5 286 281-600 21-315 (1144)
38 KOG3527 Erythrocyte membrane p 99.9 2.5E-21 5.3E-26 226.5 15.1 295 280-612 29-327 (975)
39 PF00373 FERM_M: FERM central 99.8 1E-18 2.2E-23 172.9 12.6 115 390-504 3-126 (126)
40 KOG3552 FERM domain protein FR 99.8 2.2E-19 4.8E-24 209.3 7.9 317 259-597 164-500 (1298)
41 TIGR02169 SMC_prok_A chromosom 99.3 5.6E-09 1.2E-13 143.3 41.6 44 464-508 535-582 (1164)
42 COG1196 Smc Chromosome segrega 99.3 1E-08 2.3E-13 137.4 40.5 109 601-712 645-753 (1163)
43 KOG4257 Focal adhesion tyrosin 99.3 2.4E-11 5.2E-16 139.1 12.5 295 284-590 4-321 (974)
44 TIGR02168 SMC_prok_B chromosom 99.2 2.8E-08 6E-13 136.8 41.2 94 619-712 670-763 (1179)
45 TIGR02168 SMC_prok_B chromosom 99.2 3.9E-08 8.5E-13 135.3 37.9 97 624-720 668-764 (1179)
46 KOG3531 Rho guanine nucleotide 99.1 5.2E-11 1.1E-15 139.7 4.4 249 279-566 36-284 (1036)
47 KOG0996 Structural maintenance 99.1 2E-07 4.3E-12 114.7 34.7 54 991-1058 1145-1198(1293)
48 KOG0933 Structural maintenance 99.1 5.9E-07 1.3E-11 108.7 37.7 224 603-834 656-887 (1174)
49 PF07888 CALCOCO1: Calcium bin 99.1 1.1E-06 2.4E-11 103.1 38.3 92 624-715 141-232 (546)
50 TIGR02169 SMC_prok_A chromosom 99.0 4.6E-07 9.9E-12 124.6 40.3 13 1059-1071 624-636 (1164)
51 KOG0161 Myosin class II heavy 99.0 9.2E-07 2E-11 117.8 38.9 18 131-148 147-164 (1930)
52 PF00261 Tropomyosin: Tropomyo 99.0 7.7E-07 1.7E-11 97.4 30.4 52 629-680 4-55 (237)
53 COG1196 Smc Chromosome segrega 99.0 2E-06 4.3E-11 115.8 40.3 95 620-714 668-762 (1163)
54 PF07888 CALCOCO1: Calcium bin 98.9 8E-06 1.7E-10 96.1 39.3 35 860-894 414-448 (546)
55 PF00261 Tropomyosin: Tropomyo 98.9 1.6E-06 3.4E-11 95.0 31.6 51 625-675 7-57 (237)
56 KOG0161 Myosin class II heavy 98.9 5.9E-06 1.3E-10 110.4 39.9 46 676-721 930-975 (1930)
57 KOG0977 Nuclear envelope prote 98.8 3.5E-06 7.7E-11 99.0 31.5 134 579-716 45-189 (546)
58 PRK02224 chromosome segregatio 98.8 4.6E-06 9.9E-11 110.5 37.1 12 993-1004 739-750 (880)
59 KOG0250 DNA repair protein RAD 98.8 1.3E-05 2.8E-10 99.5 37.5 76 994-1074 533-615 (1074)
60 KOG0250 DNA repair protein RAD 98.8 9.8E-06 2.1E-10 100.5 36.4 15 887-901 493-507 (1074)
61 KOG3784 Sorting nexin protein 98.8 8.4E-08 1.8E-12 105.8 16.3 245 282-595 107-362 (407)
62 KOG0971 Microtubule-associated 98.8 2.6E-05 5.6E-10 93.4 36.8 19 935-953 649-667 (1243)
63 PRK02224 chromosome segregatio 98.8 8.6E-06 1.9E-10 107.9 37.6 13 307-319 113-125 (880)
64 KOG0971 Microtubule-associated 98.8 1.5E-05 3.2E-10 95.3 34.0 28 623-650 228-255 (1243)
65 KOG4371 Membrane-associated pr 98.8 5E-09 1.1E-13 125.9 5.0 279 283-576 500-797 (1332)
66 PF09379 FERM_N: FERM N-termin 98.8 7.1E-09 1.5E-13 93.2 4.7 80 287-386 1-80 (80)
67 PRK11637 AmiB activator; Provi 98.7 1.2E-05 2.6E-10 96.7 33.1 84 623-706 44-127 (428)
68 KOG0933 Structural maintenance 98.7 2.8E-05 6.1E-10 94.7 35.4 222 600-827 658-887 (1174)
69 KOG0976 Rho/Rac1-interacting s 98.7 3.5E-05 7.5E-10 90.9 34.5 76 623-698 89-164 (1265)
70 KOG0964 Structural maintenance 98.7 3.6E-05 7.8E-10 93.3 35.4 118 600-718 647-770 (1200)
71 KOG1029 Endocytic adaptor prot 98.7 5.6E-05 1.2E-09 89.1 35.9 24 1114-1137 957-980 (1118)
72 KOG1029 Endocytic adaptor prot 98.7 2.4E-05 5.3E-10 92.0 32.9 31 843-873 561-591 (1118)
73 PRK11637 AmiB activator; Provi 98.7 1.8E-05 3.9E-10 95.1 33.0 86 629-714 43-128 (428)
74 KOG0964 Structural maintenance 98.7 1.8E-05 4E-10 95.7 32.0 105 734-838 328-438 (1200)
75 COG4372 Uncharacterized protei 98.7 9E-05 2E-09 81.0 34.1 21 964-987 391-411 (499)
76 KOG0996 Structural maintenance 98.7 9.5E-05 2E-09 91.9 37.1 9 113-121 60-68 (1293)
77 COG1340 Uncharacterized archae 98.7 0.00047 1E-08 74.9 37.9 84 630-713 17-100 (294)
78 KOG0994 Extracellular matrix g 98.6 0.00013 2.9E-09 89.3 37.1 24 873-896 1731-1754(1758)
79 KOG0995 Centromere-associated 98.6 0.00014 3.1E-09 84.6 35.9 132 627-758 236-370 (581)
80 TIGR00606 rad50 rad50. This fa 98.6 6.2E-05 1.4E-09 102.8 39.4 48 725-772 879-926 (1311)
81 PRK03918 chromosome segregatio 98.6 0.00011 2.3E-09 97.7 40.5 20 1115-1134 773-793 (880)
82 PF09755 DUF2046: Uncharacteri 98.6 0.0017 3.6E-08 71.1 40.7 181 618-800 19-202 (310)
83 PF00038 Filament: Intermediat 98.6 0.0002 4.2E-09 82.8 36.1 125 580-709 8-137 (312)
84 COG4372 Uncharacterized protei 98.6 0.00025 5.4E-09 77.7 33.5 66 770-835 218-283 (499)
85 COG1340 Uncharacterized archae 98.6 0.00028 6.1E-09 76.6 33.7 71 629-699 30-100 (294)
86 KOG0977 Nuclear envelope prote 98.6 0.00012 2.6E-09 86.5 33.4 84 622-705 38-136 (546)
87 PHA02562 46 endonuclease subun 98.6 9.9E-05 2.1E-09 92.9 35.7 18 990-1007 508-525 (562)
88 KOG4229 Myosin VII, myosin IXB 98.6 2.7E-08 5.8E-13 125.7 3.4 494 68-593 50-570 (1062)
89 PF09726 Macoilin: Transmembra 98.6 4.7E-05 1E-09 94.7 31.5 91 623-713 422-512 (697)
90 TIGR00606 rad50 rad50. This fa 98.6 0.00013 2.8E-09 99.8 38.9 40 620-659 823-862 (1311)
91 KOG0976 Rho/Rac1-interacting s 98.5 0.00024 5.1E-09 84.1 34.4 41 859-899 368-408 (1265)
92 PF00038 Filament: Intermediat 98.5 0.00079 1.7E-08 77.8 38.4 93 789-887 208-300 (312)
93 PHA02562 46 endonuclease subun 98.5 0.0002 4.3E-09 90.2 35.5 12 932-943 497-508 (562)
94 PRK03918 chromosome segregatio 98.5 0.00032 6.9E-09 93.3 39.2 13 1221-1233 825-837 (880)
95 KOG0995 Centromere-associated 98.5 0.002 4.2E-08 75.4 39.2 131 632-762 234-367 (581)
96 KOG0612 Rho-associated, coiled 98.5 0.00026 5.7E-09 88.5 34.1 41 661-701 494-534 (1317)
97 KOG4673 Transcription factor T 98.5 0.0007 1.5E-08 79.3 35.2 37 841-877 590-626 (961)
98 PRK01156 chromosome segregatio 98.5 0.00044 9.5E-09 91.8 39.3 10 1205-1214 874-883 (895)
99 KOG4643 Uncharacterized coiled 98.5 0.00049 1.1E-08 84.2 34.7 37 620-656 258-294 (1195)
100 COG4942 Membrane-bound metallo 98.4 0.00078 1.7E-08 77.1 34.3 63 627-689 39-101 (420)
101 cd01787 GRB7_RA RA (RAS-associ 98.4 1.1E-06 2.5E-11 76.5 8.6 83 282-382 2-84 (85)
102 PRK04863 mukB cell division pr 98.4 0.00048 1E-08 92.7 36.2 6 580-585 258-263 (1486)
103 PRK01156 chromosome segregatio 98.4 0.00082 1.8E-08 89.3 38.5 20 986-1005 832-851 (895)
104 PF15070 GOLGA2L5: Putative go 98.4 0.0013 2.9E-08 80.7 37.0 9 1113-1121 542-550 (617)
105 PF10174 Cast: RIM-binding pro 98.4 0.00066 1.4E-08 84.9 34.2 31 623-653 228-258 (775)
106 PF09726 Macoilin: Transmembra 98.4 0.00036 7.8E-09 87.0 31.9 13 139-151 27-39 (697)
107 PRK04778 septation ring format 98.4 0.0013 2.8E-08 81.9 37.0 56 621-676 100-155 (569)
108 KOG0999 Microtubule-associated 98.4 0.0012 2.5E-08 75.7 32.5 16 1225-1240 656-671 (772)
109 COG4942 Membrane-bound metallo 98.3 0.0015 3.2E-08 74.9 33.7 73 633-705 38-110 (420)
110 KOG0018 Structural maintenance 98.3 0.00036 7.8E-09 86.4 30.5 113 605-717 637-753 (1141)
111 KOG0994 Extracellular matrix g 98.3 0.00077 1.7E-08 82.9 32.4 83 734-816 1591-1673(1758)
112 PF05667 DUF812: Protein of un 98.3 0.0019 4.2E-08 79.0 36.7 94 622-715 324-420 (594)
113 KOG0980 Actin-binding protein 98.3 0.0015 3.2E-08 79.4 34.1 87 416-510 180-271 (980)
114 PF10174 Cast: RIM-binding pro 98.3 0.0018 3.9E-08 81.1 36.1 59 660-718 286-344 (775)
115 KOG4643 Uncharacterized coiled 98.3 0.0054 1.2E-07 75.5 38.2 40 620-659 302-341 (1195)
116 PRK04863 mukB cell division pr 98.3 0.0024 5.2E-08 86.2 38.8 9 577-585 277-285 (1486)
117 KOG3727 Mitogen inducible gene 98.3 2.1E-06 4.5E-11 98.0 8.7 137 449-590 502-639 (664)
118 COG5185 HEC1 Protein involved 98.3 0.0026 5.7E-08 71.6 32.5 107 646-752 294-400 (622)
119 PF12128 DUF3584: Protein of u 98.3 0.0028 6.1E-08 85.9 40.1 97 622-718 603-700 (1201)
120 KOG0946 ER-Golgi vesicle-tethe 98.2 0.0008 1.7E-08 80.7 29.3 61 137-202 140-201 (970)
121 KOG0980 Actin-binding protein 98.2 0.0029 6.3E-08 76.9 33.9 20 1200-1219 879-898 (980)
122 KOG0612 Rho-associated, coiled 98.2 0.0033 7.2E-08 79.1 35.0 45 665-709 491-535 (1317)
123 cd00836 FERM_C FERM_C domain. 98.2 9.1E-06 2E-10 74.9 10.0 85 498-590 1-89 (92)
124 KOG4674 Uncharacterized conser 98.2 0.003 6.5E-08 83.8 36.2 78 641-718 81-158 (1822)
125 KOG2129 Uncharacterized conser 98.2 0.0053 1.2E-07 68.1 32.3 61 841-901 288-348 (552)
126 PF12128 DUF3584: Protein of u 98.2 0.0044 9.5E-08 84.1 38.9 9 140-148 143-151 (1201)
127 KOG0946 ER-Golgi vesicle-tethe 98.2 0.00053 1.1E-08 82.2 26.0 89 123-220 65-155 (970)
128 PF05667 DUF812: Protein of un 98.2 0.0046 9.9E-08 75.9 35.0 94 625-718 320-416 (594)
129 TIGR03185 DNA_S_dndD DNA sulfu 98.2 0.0084 1.8E-07 76.3 39.2 72 765-836 394-467 (650)
130 KOG1003 Actin filament-coating 98.2 0.0037 8E-08 63.0 27.4 30 623-652 8-37 (205)
131 KOG4674 Uncharacterized conser 98.1 0.0064 1.4E-07 80.9 37.4 18 1224-1241 661-678 (1822)
132 KOG4673 Transcription factor T 98.1 0.016 3.5E-07 68.3 36.4 34 622-655 405-438 (961)
133 PF09730 BicD: Microtubule-ass 98.1 0.012 2.5E-07 72.9 37.5 55 784-838 266-320 (717)
134 KOG0999 Microtubule-associated 98.1 0.014 2.9E-07 67.3 34.1 19 620-638 9-27 (772)
135 PRK04778 septation ring format 98.1 0.0033 7.1E-08 78.4 32.1 172 624-804 254-425 (569)
136 KOG1003 Actin filament-coating 98.1 0.0061 1.3E-07 61.5 27.1 16 697-712 54-69 (205)
137 COG1579 Zn-ribbon protein, pos 98.1 0.00078 1.7E-08 71.8 22.3 53 658-710 28-80 (239)
138 COG3883 Uncharacterized protei 98.0 0.0077 1.7E-07 65.0 29.0 89 736-824 129-217 (265)
139 COG5059 KIP1 Kinesin-like prot 98.0 6.8E-08 1.5E-12 118.3 -10.7 271 874-1157 289-566 (568)
140 COG1579 Zn-ribbon protein, pos 98.0 0.002 4.3E-08 68.8 23.2 19 818-836 156-174 (239)
141 TIGR03185 DNA_S_dndD DNA sulfu 98.0 0.019 4.2E-07 73.0 36.9 40 627-666 210-249 (650)
142 PF05483 SCP-1: Synaptonemal c 97.9 0.093 2E-06 62.7 38.0 12 579-590 154-165 (786)
143 KOG0979 Structural maintenance 97.9 0.013 2.8E-07 72.8 32.3 50 620-669 175-224 (1072)
144 PRK11281 hypothetical protein; 97.9 0.005 1.1E-07 80.6 30.9 34 1184-1218 996-1030(1113)
145 PF06160 EzrA: Septation ring 97.9 0.031 6.7E-07 69.4 36.0 54 623-676 98-151 (560)
146 PF09730 BicD: Microtubule-ass 97.9 0.075 1.6E-06 66.0 38.4 64 624-687 32-95 (717)
147 PF12718 Tropomyosin_1: Tropom 97.9 0.0019 4.2E-08 64.2 19.9 34 677-710 23-56 (143)
148 PF04849 HAP1_N: HAP1 N-termin 97.9 0.017 3.7E-07 63.7 28.8 29 649-677 92-120 (306)
149 KOG0978 E3 ubiquitin ligase in 97.9 0.047 1E-06 66.9 35.0 100 736-835 463-562 (698)
150 TIGR02680 conserved hypothetic 97.9 0.025 5.4E-07 77.4 37.0 90 624-713 740-831 (1353)
151 KOG0963 Transcription factor/C 97.8 0.078 1.7E-06 63.1 35.4 35 619-653 15-49 (629)
152 PRK11281 hypothetical protein; 97.8 0.014 3E-07 76.6 32.6 37 800-836 295-331 (1113)
153 KOG0963 Transcription factor/C 97.8 0.016 3.4E-07 68.7 29.4 56 782-838 302-357 (629)
154 PF00788 RA: Ras association ( 97.8 7.9E-05 1.7E-09 69.0 8.9 84 283-383 3-91 (93)
155 KOG0018 Structural maintenance 97.8 0.013 2.9E-07 73.1 28.8 24 965-988 622-645 (1141)
156 PRK10929 putative mechanosensi 97.8 0.017 3.6E-07 75.5 31.1 11 957-967 391-401 (1109)
157 TIGR02680 conserved hypothetic 97.8 0.035 7.7E-07 76.0 35.8 103 616-718 725-829 (1353)
158 PF15619 Lebercilin: Ciliary p 97.7 0.018 3.9E-07 60.4 25.5 80 626-705 12-91 (194)
159 PF09789 DUF2353: Uncharacteri 97.7 0.022 4.7E-07 63.6 27.3 199 623-821 13-227 (319)
160 cd01203 DOK_PTB Downstream of 97.7 0.00018 4E-09 65.3 8.9 74 515-590 18-95 (104)
161 PF01576 Myosin_tail_1: Myosin 97.7 7.9E-06 1.7E-10 105.4 0.0 232 658-894 135-366 (859)
162 PRK09039 hypothetical protein; 97.7 0.0081 1.8E-07 69.4 24.5 39 740-778 122-160 (343)
163 KOG0979 Structural maintenance 97.7 0.043 9.3E-07 68.4 31.3 44 645-688 179-222 (1072)
164 PF06160 EzrA: Septation ring 97.7 0.033 7.2E-07 69.1 30.8 85 624-710 250-334 (560)
165 PRK09039 hypothetical protein; 97.7 0.008 1.7E-07 69.4 23.7 8 969-976 265-272 (343)
166 KOG0978 E3 ubiquitin ligase in 97.6 0.25 5.5E-06 60.7 36.5 21 955-975 671-691 (698)
167 PRK10929 putative mechanosensi 97.6 0.058 1.2E-06 70.7 33.2 37 1182-1219 991-1028(1109)
168 PF01576 Myosin_tail_1: Myosin 97.6 1.2E-05 2.5E-10 103.9 0.0 24 875-898 544-567 (859)
169 PF09728 Taxilin: Myosin-like 97.6 0.22 4.7E-06 56.7 38.8 44 622-665 25-68 (309)
170 PF08317 Spc7: Spc7 kinetochor 97.6 0.07 1.5E-06 61.6 30.2 32 619-650 68-99 (325)
171 cd00824 PTBI IRS-like phosphot 97.6 0.00059 1.3E-08 63.2 10.5 80 514-595 17-100 (104)
172 smart00787 Spc7 Spc7 kinetocho 97.6 0.13 2.8E-06 58.4 31.4 31 620-650 64-94 (312)
173 PF08317 Spc7: Spc7 kinetochor 97.6 0.061 1.3E-06 62.1 29.3 7 527-533 23-29 (325)
174 PF14915 CCDC144C: CCDC144C pr 97.6 0.19 4E-06 54.8 38.3 8 797-804 221-228 (305)
175 PF15619 Lebercilin: Ciliary p 97.6 0.042 9.2E-07 57.7 25.3 82 624-705 17-98 (194)
176 TIGR03007 pepcterm_ChnLen poly 97.6 0.029 6.2E-07 69.5 28.6 28 569-596 124-151 (498)
177 PF04849 HAP1_N: HAP1 N-termin 97.6 0.06 1.3E-06 59.5 27.3 12 629-640 65-76 (306)
178 PF15066 CAGE1: Cancer-associa 97.6 0.14 3E-06 58.6 30.3 8 605-612 282-289 (527)
179 cd01768 RA RA (Ras-associating 97.5 0.00048 1E-08 62.8 9.3 81 285-382 2-86 (87)
180 COG0419 SbcC ATPase involved i 97.5 0.25 5.4E-06 65.6 38.2 9 957-965 831-839 (908)
181 COG0419 SbcC ATPase involved i 97.5 0.42 9E-06 63.6 39.4 13 307-319 118-130 (908)
182 COG4477 EzrA Negative regulato 97.5 0.29 6.2E-06 57.4 32.2 43 623-667 252-294 (570)
183 PF09380 FERM_C: FERM C-termin 97.5 0.00051 1.1E-08 63.1 8.4 75 518-592 5-79 (90)
184 PF06008 Laminin_I: Laminin Do 97.5 0.31 6.8E-06 54.6 33.1 95 623-717 21-115 (264)
185 smart00314 RA Ras association 97.4 0.00039 8.4E-09 63.9 7.5 83 283-383 3-89 (90)
186 KOG0962 DNA repair protein RAD 97.4 0.51 1.1E-05 61.6 36.2 12 963-974 1204-1215(1294)
187 PF13514 AAA_27: AAA domain 97.4 0.53 1.1E-05 64.1 39.3 17 128-144 128-144 (1111)
188 PF06008 Laminin_I: Laminin Do 97.4 0.24 5.3E-06 55.5 30.2 60 642-701 47-106 (264)
189 KOG0962 DNA repair protein RAD 97.4 0.27 5.9E-06 64.0 33.3 16 991-1006 1127-1142(1294)
190 PF15066 CAGE1: Cancer-associa 97.4 0.21 4.6E-06 57.1 28.5 45 734-778 390-434 (527)
191 PF13514 AAA_27: AAA domain 97.3 0.7 1.5E-05 62.9 39.7 19 943-961 1027-1046(1111)
192 TIGR01005 eps_transp_fam exopo 97.3 0.052 1.1E-06 70.8 27.9 27 569-595 157-183 (754)
193 KOG4809 Rab6 GTPase-interactin 97.3 0.26 5.6E-06 57.4 29.1 42 734-775 428-469 (654)
194 PF10473 CENP-F_leu_zip: Leuci 97.3 0.051 1.1E-06 53.3 20.5 85 630-714 7-91 (140)
195 PF02174 IRS: PTB domain (IRS- 97.3 0.00088 1.9E-08 62.5 8.1 74 516-591 20-97 (100)
196 PF15397 DUF4618: Domain of un 97.3 0.39 8.4E-06 52.2 31.5 22 697-718 82-103 (258)
197 PF10473 CENP-F_leu_zip: Leuci 97.3 0.07 1.5E-06 52.4 21.1 98 772-869 34-132 (140)
198 KOG4809 Rab6 GTPase-interactin 97.3 0.53 1.1E-05 55.0 30.9 42 622-663 239-280 (654)
199 smart00787 Spc7 Spc7 kinetocho 97.3 0.3 6.6E-06 55.4 29.3 11 526-536 18-28 (312)
200 TIGR01843 type_I_hlyD type I s 97.3 0.04 8.7E-07 66.7 24.2 19 625-643 80-98 (423)
201 KOG4593 Mitotic checkpoint pro 97.2 0.93 2E-05 55.0 38.1 18 1138-1155 608-625 (716)
202 KOG0249 LAR-interacting protei 97.2 0.042 9.1E-07 65.5 21.9 48 626-673 35-82 (916)
203 smart00310 PTBI Phosphotyrosin 97.2 0.0026 5.7E-08 58.1 9.6 73 517-591 19-95 (98)
204 PF09789 DUF2353: Uncharacteri 97.2 0.18 4E-06 56.5 25.9 28 691-718 74-101 (319)
205 KOG1937 Uncharacterized conser 97.2 0.7 1.5E-05 52.8 30.9 30 736-765 347-376 (521)
206 KOG4335 FERM domain-containing 97.2 3.6E-05 7.8E-10 87.4 -3.1 262 264-549 236-509 (558)
207 cd01202 FRS2 Fibroblast growth 97.1 0.0034 7.4E-08 56.5 9.2 87 499-590 3-93 (102)
208 KOG0249 LAR-interacting protei 97.1 0.066 1.4E-06 63.9 22.2 39 786-824 219-257 (916)
209 PF13851 GAS: Growth-arrest sp 97.1 0.2 4.3E-06 53.3 24.0 38 734-771 93-130 (201)
210 TIGR00634 recN DNA repair prot 97.1 0.14 3E-06 64.1 26.8 27 982-1008 465-491 (563)
211 PRK10246 exonuclease subunit S 97.1 2.4 5.2E-05 57.2 40.6 38 982-1019 978-1015(1047)
212 TIGR01843 type_I_hlyD type I s 97.1 0.056 1.2E-06 65.4 23.0 18 621-638 83-100 (423)
213 PF05557 MAD: Mitotic checkpoi 97.0 0.0084 1.8E-07 77.2 16.1 51 626-676 343-393 (722)
214 KOG1937 Uncharacterized conser 97.0 0.92 2E-05 51.9 34.1 19 865-883 497-515 (521)
215 PF06818 Fez1: Fez1; InterPro 97.0 0.29 6.4E-06 50.8 23.1 98 618-715 9-106 (202)
216 TIGR00634 recN DNA repair prot 97.0 0.11 2.3E-06 65.1 24.5 7 894-900 397-403 (563)
217 PF07111 HCR: Alpha helical co 97.0 1.6 3.5E-05 53.1 38.7 21 399-419 191-211 (739)
218 PF05911 DUF869: Plant protein 97.0 0.53 1.1E-05 59.5 29.7 94 734-827 596-689 (769)
219 PF13851 GAS: Growth-arrest sp 96.9 0.66 1.4E-05 49.4 26.4 21 757-777 102-122 (201)
220 PF05622 HOOK: HOOK protein; 96.9 0.00021 4.4E-09 91.6 0.0 35 667-701 369-403 (713)
221 PF05911 DUF869: Plant protein 96.9 0.49 1.1E-05 59.8 29.0 14 419-432 297-310 (769)
222 PRK10246 exonuclease subunit S 96.9 1.4 3E-05 59.5 35.2 9 496-504 506-514 (1047)
223 TIGR03007 pepcterm_ChnLen poly 96.9 0.22 4.7E-06 61.7 26.2 32 651-682 158-189 (498)
224 PF09728 Taxilin: Myosin-like 96.9 1.3 2.7E-05 50.6 40.2 10 581-590 24-33 (309)
225 TIGR03017 EpsF chain length de 96.8 0.52 1.1E-05 57.4 28.6 27 568-594 133-159 (444)
226 cd01777 SNX27_RA Ubiquitin dom 96.8 0.0025 5.4E-08 56.0 5.7 49 283-331 2-52 (87)
227 PLN03188 kinesin-12 family pro 96.8 2.2 4.7E-05 55.7 33.1 52 842-893 1201-1252(1320)
228 KOG2991 Splicing regulator [RN 96.8 0.95 2.1E-05 47.7 24.9 50 620-669 109-158 (330)
229 PRK10869 recombination and rep 96.7 0.55 1.2E-05 58.3 27.7 28 982-1009 455-482 (553)
230 KOG0243 Kinesin-like protein [ 96.7 2.3 5E-05 54.6 32.7 95 621-715 406-509 (1041)
231 KOG0982 Centrosomal protein Nu 96.7 1.6 3.5E-05 49.7 30.7 11 635-645 224-234 (502)
232 PRK10869 recombination and rep 96.7 0.32 6.9E-06 60.4 25.4 10 892-901 390-399 (553)
233 PF09787 Golgin_A5: Golgin sub 96.7 1.5 3.3E-05 54.0 30.7 23 623-645 113-135 (511)
234 COG4477 EzrA Negative regulato 96.7 2.2 4.7E-05 50.4 31.2 10 268-277 43-52 (570)
235 TIGR01005 eps_transp_fam exopo 96.6 0.31 6.6E-06 63.7 25.9 29 955-983 534-564 (754)
236 PF07111 HCR: Alpha helical co 96.6 2.7 5.9E-05 51.3 37.7 32 789-820 330-361 (739)
237 KOG1899 LAR transmembrane tyro 96.6 0.26 5.7E-06 58.1 21.6 91 619-709 104-194 (861)
238 COG3096 MukB Uncharacterized p 96.6 2.7 5.8E-05 50.8 34.6 52 624-675 353-404 (1480)
239 PF10481 CENP-F_N: Cenp-F N-te 96.6 0.16 3.5E-06 54.0 17.9 31 860-890 159-189 (307)
240 PF05557 MAD: Mitotic checkpoi 96.5 0.00061 1.3E-08 87.5 0.0 8 1024-1031 637-644 (722)
241 KOG1899 LAR transmembrane tyro 96.5 0.31 6.6E-06 57.5 21.3 19 991-1009 486-504 (861)
242 PF10481 CENP-F_N: Cenp-F N-te 96.5 0.27 5.9E-06 52.4 19.0 57 640-696 25-81 (307)
243 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.5 0.27 5.9E-06 48.6 18.5 37 851-887 93-129 (132)
244 cd00435 ACBP Acyl CoA binding 96.5 0.011 2.4E-07 53.1 7.7 81 401-500 4-85 (85)
245 PLN02939 transferase, transfer 96.5 1.3 2.8E-05 57.1 28.5 51 622-672 131-181 (977)
246 PF10168 Nup88: Nuclear pore c 96.5 0.37 8.1E-06 61.1 23.8 12 521-532 456-467 (717)
247 KOG4360 Uncharacterized coiled 96.5 1.2 2.7E-05 51.7 25.2 13 892-904 356-368 (596)
248 COG3096 MukB Uncharacterized p 96.4 3.4 7.4E-05 50.0 32.4 19 452-470 183-201 (1480)
249 PF03148 Tektin: Tektin family 96.4 3 6.5E-05 49.3 37.2 44 624-667 48-91 (384)
250 KOG1853 LIS1-interacting prote 96.4 1.5 3.2E-05 46.2 23.3 22 684-705 54-75 (333)
251 PF09755 DUF2046: Uncharacteri 96.4 2.2 4.7E-05 47.5 38.5 47 620-666 28-74 (310)
252 TIGR01000 bacteriocin_acc bact 96.4 0.74 1.6E-05 56.2 25.5 16 958-973 369-384 (457)
253 PF12795 MscS_porin: Mechanose 96.4 2.1 4.6E-05 47.2 27.5 27 647-673 38-64 (240)
254 KOG4677 Golgi integral membran 96.3 2.9 6.3E-05 47.9 30.0 40 740-779 308-347 (554)
255 KOG3751 Growth factor receptor 96.2 0.01 2.2E-07 68.4 7.2 88 280-385 186-273 (622)
256 KOG1850 Myosin-like coiled-coi 96.2 2.6 5.6E-05 46.1 30.9 109 787-898 226-334 (391)
257 TIGR01000 bacteriocin_acc bact 96.2 0.68 1.5E-05 56.4 23.6 25 624-648 95-119 (457)
258 PF09787 Golgin_A5: Golgin sub 96.2 5.2 0.00011 49.4 34.5 31 622-652 105-135 (511)
259 KOG1850 Myosin-like coiled-coi 96.1 2.8 6E-05 45.9 37.3 27 863-889 292-318 (391)
260 PF10168 Nup88: Nuclear pore c 96.1 0.22 4.7E-06 63.1 19.0 10 585-594 505-514 (717)
261 PF06818 Fez1: Fez1; InterPro 96.1 2.1 4.5E-05 44.7 22.5 15 691-705 12-26 (202)
262 COG0497 RecN ATPase involved i 96.1 3.7 8E-05 49.9 27.9 29 982-1010 456-484 (557)
263 KOG1853 LIS1-interacting prote 96.1 2.4 5.2E-05 44.7 23.6 18 675-692 59-76 (333)
264 PF05384 DegS: Sensor protein 96.0 2 4.4E-05 43.4 23.0 27 755-781 98-124 (159)
265 PLN02939 transferase, transfer 96.0 6.4 0.00014 51.0 31.0 6 990-995 621-626 (977)
266 cd01776 Rin1_RA Ubiquitin doma 96.0 0.016 3.5E-07 49.7 5.5 57 293-361 14-70 (87)
267 COG0497 RecN ATPase involved i 96.0 3.2 7E-05 50.3 26.8 17 1082-1098 490-506 (557)
268 PF12795 MscS_porin: Mechanose 96.0 3.5 7.5E-05 45.5 26.1 59 758-816 153-211 (240)
269 KOG4438 Centromere-associated 95.9 4.4 9.5E-05 46.6 32.9 20 576-595 107-126 (446)
270 KOG4807 F-actin binding protei 95.9 3.8 8.3E-05 45.9 31.4 37 618-654 290-326 (593)
271 PF08614 ATG16: Autophagy prot 95.9 0.11 2.3E-06 55.3 13.0 91 619-709 67-157 (194)
272 PF04012 PspA_IM30: PspA/IM30 95.9 2.3 4.9E-05 46.3 23.6 39 740-778 97-135 (221)
273 PF06785 UPF0242: Uncharacteri 95.9 0.62 1.4E-05 51.0 18.2 14 539-552 27-40 (401)
274 KOG0992 Uncharacterized conser 95.8 5.2 0.00011 46.7 30.9 34 623-656 57-90 (613)
275 TIGR03017 EpsF chain length de 95.8 1.9 4E-05 52.6 25.3 35 649-683 166-200 (444)
276 PF12777 MT: Microtubule-bindi 95.8 0.93 2E-05 52.9 21.2 15 628-642 17-31 (344)
277 PF13166 AAA_13: AAA domain 95.8 3.9 8.4E-05 53.2 29.4 7 412-418 83-89 (712)
278 KOG4302 Microtubule-associated 95.8 7.8 0.00017 48.1 29.5 35 727-761 160-194 (660)
279 cd01778 RASSF1_RA Ubiquitin-li 95.7 0.036 7.8E-07 50.0 7.0 47 283-329 7-54 (96)
280 KOG2129 Uncharacterized conser 95.7 4.9 0.00011 45.6 27.1 39 616-654 40-78 (552)
281 PF06785 UPF0242: Uncharacteri 95.7 1.5 3.2E-05 48.2 20.1 17 994-1010 282-298 (401)
282 cd01784 rasfadin_RA Ubiquitin- 95.6 0.03 6.5E-07 49.1 5.8 46 285-330 4-51 (87)
283 KOG4371 Membrane-associated pr 95.6 0.0059 1.3E-07 75.3 2.1 145 278-440 33-182 (1332)
284 PF15450 DUF4631: Domain of un 95.6 7 0.00015 46.3 34.0 13 878-890 494-506 (531)
285 COG3206 GumC Uncharacterized p 95.6 2.6 5.7E-05 51.4 25.1 17 887-903 404-420 (458)
286 PF12325 TMF_TATA_bd: TATA ele 95.6 0.49 1.1E-05 45.4 14.5 14 654-667 23-36 (120)
287 PF05276 SH3BP5: SH3 domain-bi 95.5 4.7 0.0001 43.8 30.9 39 677-715 72-110 (239)
288 KOG4438 Centromere-associated 95.5 6.4 0.00014 45.3 34.8 14 463-476 54-67 (446)
289 PF04012 PspA_IM30: PspA/IM30 95.4 3.8 8.2E-05 44.6 23.1 40 735-774 99-138 (221)
290 PF12325 TMF_TATA_bd: TATA ele 95.3 0.9 1.9E-05 43.6 15.3 15 822-836 93-107 (120)
291 PF04111 APG6: Autophagy prote 95.3 0.33 7.2E-06 55.4 14.9 6 897-902 196-201 (314)
292 PF13166 AAA_13: AAA domain 95.2 5.2 0.00011 52.0 27.8 10 304-313 31-40 (712)
293 PF00887 ACBP: Acyl CoA bindin 95.2 0.063 1.4E-06 48.8 7.1 75 402-495 5-81 (87)
294 KOG4302 Microtubule-associated 95.2 12 0.00026 46.6 29.5 130 640-769 54-195 (660)
295 cd01760 RBD Ubiquitin-like dom 95.1 0.045 9.7E-07 47.3 5.4 43 285-328 2-44 (72)
296 PF11932 DUF3450: Protein of u 95.0 1.6 3.5E-05 48.5 19.1 27 847-873 133-159 (251)
297 KOG1103 Predicted coiled-coil 95.0 7.2 0.00016 43.1 23.0 30 680-709 144-173 (561)
298 PF10212 TTKRSYEDQ: Predicted 95.0 2.4 5.2E-05 50.4 20.7 12 478-489 185-196 (518)
299 PF04111 APG6: Autophagy prote 95.0 0.47 1E-05 54.2 14.9 11 977-987 215-225 (314)
300 PF04912 Dynamitin: Dynamitin 94.9 8.1 0.00018 45.9 25.8 26 621-646 89-114 (388)
301 PF00769 ERM: Ezrin/radixin/mo 94.9 1.4 2.9E-05 48.6 17.6 12 788-799 101-112 (246)
302 cd01817 RGS12_RBD Ubiquitin do 94.9 0.098 2.1E-06 44.7 6.6 43 285-328 2-44 (73)
303 KOG2685 Cystoskeletal protein 94.8 9.8 0.00021 43.8 33.3 44 849-892 351-394 (421)
304 COG1842 PspA Phage shock prote 94.8 7.1 0.00015 42.2 23.4 44 735-778 93-136 (225)
305 TIGR02977 phageshock_pspA phag 94.8 7.2 0.00016 42.3 23.7 36 654-689 31-66 (219)
306 PTZ00458 acyl CoA binding prot 94.8 0.12 2.7E-06 46.7 7.5 79 402-499 5-86 (90)
307 PF11559 ADIP: Afadin- and alp 94.6 5.9 0.00013 40.2 21.1 69 628-696 40-108 (151)
308 KOG0804 Cytoplasmic Zn-finger 94.6 2 4.2E-05 49.5 18.0 20 296-315 79-98 (493)
309 cd01775 CYR1_RA Ubiquitin doma 94.6 0.18 3.8E-06 45.6 7.9 68 282-361 2-69 (97)
310 KOG0239 Kinesin (KAR3 subfamil 94.6 2.9 6.3E-05 52.7 21.4 15 944-958 444-459 (670)
311 COG3206 GumC Uncharacterized p 94.5 16 0.00034 44.7 28.8 25 651-675 192-216 (458)
312 COG1842 PspA Phage shock prote 94.5 8.4 0.00018 41.6 24.8 36 652-687 29-64 (225)
313 KOG0244 Kinesin-like protein [ 94.5 5.2 0.00011 50.7 22.9 20 620-639 331-350 (913)
314 COG4913 Uncharacterized protei 94.4 16 0.00036 44.7 25.7 40 627-666 617-656 (1104)
315 TIGR00618 sbcc exonuclease Sbc 94.4 29 0.00062 47.3 40.2 16 1221-1236 991-1006(1042)
316 PF10498 IFT57: Intra-flagella 94.4 3.5 7.5E-05 47.9 20.1 9 422-430 46-54 (359)
317 COG4913 Uncharacterized protei 94.4 17 0.00037 44.5 28.6 10 402-411 449-458 (1104)
318 PF09304 Cortex-I_coil: Cortex 94.4 2.3 5.1E-05 39.2 14.5 40 660-699 36-75 (107)
319 smart00455 RBD Raf-like Ras-bi 94.4 0.066 1.4E-06 46.2 4.6 43 285-328 2-44 (70)
320 KOG0804 Cytoplasmic Zn-finger 94.4 2.6 5.7E-05 48.5 18.3 8 519-526 239-246 (493)
321 KOG4229 Myosin VII, myosin IXB 94.3 0.048 1E-06 70.4 5.2 254 252-528 580-841 (1062)
322 COG2433 Uncharacterized conser 94.2 2.6 5.6E-05 50.6 18.6 29 282-313 19-47 (652)
323 PF10480 ICAP-1_inte_bdg: Beta 94.2 0.46 9.9E-06 48.2 10.6 94 485-593 87-195 (200)
324 TIGR02977 phageshock_pspA phag 94.1 10 0.00022 41.1 24.8 7 669-675 39-45 (219)
325 PF15254 CCDC14: Coiled-coil d 94.1 6 0.00013 48.8 21.6 56 777-832 502-557 (861)
326 COG2433 Uncharacterized conser 94.0 3.8 8.3E-05 49.2 19.4 19 416-434 110-128 (652)
327 PF05384 DegS: Sensor protein 93.9 8.2 0.00018 39.1 22.6 60 742-801 92-151 (159)
328 PF14073 Cep57_CLD: Centrosome 93.9 8.6 0.00019 39.3 22.3 26 753-778 125-150 (178)
329 PF04912 Dynamitin: Dynamitin 93.9 15 0.00032 43.8 24.8 15 624-638 99-113 (388)
330 COG0556 UvrB Helicase subunit 93.9 0.11 2.4E-06 60.8 6.5 91 934-1028 4-101 (663)
331 PRK10698 phage shock protein P 93.8 12 0.00025 40.7 24.0 39 654-692 31-69 (222)
332 KOG0240 Kinesin (SMY1 subfamil 93.8 19 0.00042 43.2 24.6 15 299-313 57-71 (607)
333 COG4717 Uncharacterized conser 93.8 25 0.00054 44.4 31.5 34 650-683 560-593 (984)
334 KOG4460 Nuclear pore complex, 93.8 7.7 0.00017 45.7 20.8 10 269-278 237-246 (741)
335 cd01783 DAGK_delta_RA Ubiquiti 93.8 0.55 1.2E-05 42.8 9.4 66 291-365 15-82 (97)
336 PF09738 DUF2051: Double stran 93.8 2.4 5.3E-05 47.7 16.7 86 627-712 78-163 (302)
337 PRK10698 phage shock protein P 93.7 12 0.00026 40.5 25.3 19 756-774 114-132 (222)
338 COG4717 Uncharacterized conser 93.6 27 0.00059 44.1 37.6 32 683-714 621-652 (984)
339 KOG4807 F-actin binding protei 93.5 16 0.00034 41.2 26.5 28 868-895 549-576 (593)
340 COG4026 Uncharacterized protei 93.5 0.72 1.6E-05 47.5 10.8 69 645-713 133-201 (290)
341 PF00640 PID: Phosphotyrosine 93.5 0.43 9.3E-06 47.7 9.5 79 516-595 50-136 (140)
342 PF15254 CCDC14: Coiled-coil d 93.5 26 0.00057 43.5 27.6 45 757-801 436-480 (861)
343 KOG4687 Uncharacterized coiled 93.3 13 0.00029 39.7 22.1 38 793-830 163-200 (389)
344 PF09738 DUF2051: Double stran 93.2 9.4 0.0002 43.1 20.0 95 620-714 78-172 (302)
345 PF15290 Syntaphilin: Golgi-lo 93.1 3.7 8E-05 44.4 15.7 37 843-879 136-172 (305)
346 PRK10884 SH3 domain-containing 93.1 1.5 3.2E-05 46.7 13.0 21 626-646 93-113 (206)
347 PF15290 Syntaphilin: Golgi-lo 92.9 3.1 6.6E-05 45.0 14.7 40 739-778 66-105 (305)
348 PRK09841 cryptic autophosphory 92.8 5.7 0.00012 51.5 20.6 34 950-983 514-549 (726)
349 PF00308 Bac_DnaA: Bacterial d 92.8 0.048 1E-06 59.2 1.4 49 933-983 3-51 (219)
350 PRK11519 tyrosine kinase; Prov 92.6 7.9 0.00017 50.1 21.4 26 569-594 230-255 (719)
351 COG4026 Uncharacterized protei 92.5 1.2 2.6E-05 46.0 10.7 9 581-589 78-86 (290)
352 COG5283 Phage-related tail pro 92.4 42 0.0009 44.2 26.2 11 794-804 131-141 (1213)
353 PF11932 DUF3450: Protein of u 92.4 8.5 0.00018 42.8 18.7 13 888-900 163-175 (251)
354 PF03148 Tektin: Tektin family 92.4 29 0.00062 41.2 38.9 31 629-659 60-90 (384)
355 KOG4460 Nuclear pore complex, 92.4 29 0.00063 41.2 23.0 38 678-715 605-642 (741)
356 PF12777 MT: Microtubule-bindi 92.3 15 0.00033 42.9 21.4 37 627-663 9-45 (344)
357 cd01782 AF6_RA_repeat1 Ubiquit 92.1 0.67 1.5E-05 42.5 7.5 46 285-330 24-77 (112)
358 PRK12704 phosphodiesterase; Pr 92.1 28 0.0006 43.0 23.9 18 938-956 276-293 (520)
359 PF15358 TSKS: Testis-specific 92.0 26 0.00057 39.9 22.4 66 620-685 126-191 (558)
360 cd01216 Fe65 Fe65 Phosphotyros 92.0 0.75 1.6E-05 44.7 8.4 76 518-594 40-120 (123)
361 KOG4286 Dystrophin-like protei 92.0 39 0.00085 41.8 27.7 128 744-871 202-334 (966)
362 KOG0288 WD40 repeat protein Ti 92.0 8.2 0.00018 44.2 17.3 29 959-987 212-240 (459)
363 cd01785 PDZ_GEF_RA Ubiquitin-l 92.0 0.67 1.4E-05 39.7 6.8 47 284-330 4-51 (85)
364 PRK10865 protein disaggregatio 91.9 0.97 2.1E-05 59.3 12.1 43 937-983 567-615 (857)
365 TIGR03319 YmdA_YtgF conserved 91.8 31 0.00067 42.5 23.9 7 948-954 279-285 (514)
366 KOG0288 WD40 repeat protein Ti 91.7 12 0.00027 42.8 18.4 10 1115-1124 365-374 (459)
367 COG5283 Phage-related tail pro 91.7 56 0.0012 43.1 32.6 85 621-705 24-108 (1213)
368 cd01215 Dab Disabled (Dab) Pho 91.6 1 2.2E-05 44.2 8.8 74 516-590 51-130 (139)
369 PRK03947 prefoldin subunit alp 91.6 4.7 0.0001 40.3 14.0 23 795-817 99-121 (140)
370 KOG3091 Nuclear pore complex, 91.6 9.7 0.00021 44.8 17.9 12 421-432 139-150 (508)
371 KOG4572 Predicted DNA-binding 91.4 45 0.00098 41.4 29.8 33 243-278 315-347 (1424)
372 KOG0992 Uncharacterized conser 91.4 36 0.00078 40.1 34.0 21 698-718 233-253 (613)
373 KOG4403 Cell surface glycoprot 91.3 27 0.00058 40.2 20.3 46 469-518 122-169 (575)
374 PF10498 IFT57: Intra-flagella 91.2 9.1 0.0002 44.5 17.6 22 575-596 96-117 (359)
375 PF04582 Reo_sigmaC: Reovirus 91.2 0.35 7.6E-06 54.1 5.9 8 1012-1019 273-280 (326)
376 COG3074 Uncharacterized protei 91.2 4.4 9.5E-05 33.8 10.4 30 660-689 24-53 (79)
377 COG2805 PilT Tfp pilus assembl 91.2 0.24 5.2E-06 54.4 4.4 41 955-1009 114-154 (353)
378 PF14992 TMCO5: TMCO5 family 91.1 22 0.00048 39.3 19.1 21 644-664 22-42 (280)
379 cd01781 AF6_RA_repeat2 Ubiquit 91.0 1.6 3.5E-05 40.1 8.9 73 290-363 13-87 (100)
380 PF06005 DUF904: Protein of un 91.0 5.5 0.00012 34.6 11.6 51 749-799 12-62 (72)
381 PF10234 Cluap1: Clusterin-ass 90.9 24 0.00052 39.0 19.3 75 790-864 169-244 (267)
382 PF14847 Ras_bdg_2: Ras-bindin 90.7 0.75 1.6E-05 43.0 6.6 65 284-355 2-67 (105)
383 KOG4687 Uncharacterized coiled 90.6 27 0.00059 37.5 25.2 99 620-718 10-119 (389)
384 PF04582 Reo_sigmaC: Reovirus 90.6 0.49 1.1E-05 53.0 6.2 24 789-812 132-155 (326)
385 cd00934 PTB Phosphotyrosine-bi 90.5 1 2.2E-05 43.7 8.0 74 516-590 40-120 (123)
386 PRK06835 DNA replication prote 90.5 1.2 2.6E-05 51.3 9.7 34 950-984 168-201 (329)
387 PF06548 Kinesin-related: Kine 90.4 42 0.0009 39.3 31.4 49 843-891 432-480 (488)
388 PRK10361 DNA recombination pro 90.4 48 0.001 39.9 26.7 15 765-779 143-157 (475)
389 COG4281 ACB Acyl-CoA-binding p 90.4 1.1 2.4E-05 38.0 6.5 81 398-497 2-82 (87)
390 PF11570 E2R135: Coiled-coil r 90.2 16 0.00035 34.9 14.6 92 622-713 4-108 (136)
391 smart00462 PTB Phosphotyrosine 90.2 1.7 3.7E-05 43.0 9.3 80 516-596 42-128 (134)
392 PF07798 DUF1640: Protein of u 90.2 25 0.00055 36.7 18.3 138 573-750 16-154 (177)
393 TIGR02971 heterocyst_DevB ABC 90.1 16 0.00035 42.4 18.9 7 1012-1018 300-306 (327)
394 COG3074 Uncharacterized protei 89.9 7.5 0.00016 32.5 10.7 50 648-697 19-68 (79)
395 COG5293 Predicted ATPase [Gene 89.9 45 0.00098 38.9 31.1 19 1012-1030 547-565 (591)
396 PF02196 RBD: Raf-like Ras-bin 89.9 0.67 1.5E-05 40.2 5.2 44 284-328 2-45 (71)
397 PRK10361 DNA recombination pro 89.7 54 0.0012 39.5 26.3 8 913-920 243-250 (475)
398 TIGR01010 BexC_CtrB_KpsE polys 89.7 33 0.00072 40.4 21.2 23 568-590 132-154 (362)
399 PF10267 Tmemb_cc2: Predicted 89.7 11 0.00024 44.1 16.5 12 624-635 217-228 (395)
400 PF08416 PTB: Phosphotyrosine- 89.6 0.71 1.5E-05 45.4 5.9 81 514-594 36-126 (131)
401 TIGR00618 sbcc exonuclease Sbc 89.6 97 0.0021 42.3 38.8 6 1128-1133 949-954 (1042)
402 PF15294 Leu_zip: Leucine zipp 89.6 38 0.00082 37.6 28.6 43 734-776 132-174 (278)
403 KOG4403 Cell surface glycoprot 89.3 47 0.001 38.3 20.6 17 488-504 152-168 (575)
404 PLN03229 acetyl-coenzyme A car 89.2 72 0.0016 40.2 26.5 40 449-488 352-396 (762)
405 PF13949 ALIX_LYPXL_bnd: ALIX 89.1 46 0.00099 37.9 34.1 42 621-662 24-65 (296)
406 KOG4239 Ras GTPase effector RA 89.1 0.54 1.2E-05 51.2 4.9 67 264-330 179-252 (348)
407 KOG0817 Acyl-CoA-binding prote 89.0 1.6 3.5E-05 43.1 7.8 91 399-508 6-97 (142)
408 PF08647 BRE1: BRE1 E3 ubiquit 89.0 14 0.00031 34.1 13.7 63 627-689 4-66 (96)
409 TIGR03794 NHPM_micro_HlyD NHPM 89.0 32 0.00069 41.5 20.8 24 784-807 228-251 (421)
410 KOG2196 Nuclear porin [Nuclear 88.9 36 0.00078 36.4 20.0 27 684-710 94-120 (254)
411 KOG4572 Predicted DNA-binding 88.8 72 0.0016 39.7 27.6 27 871-897 1093-1119(1424)
412 PF05335 DUF745: Protein of un 88.7 21 0.00046 37.4 16.1 20 734-753 151-170 (188)
413 cd01779 Myosin_IXb_RA ubitquit 88.6 0.87 1.9E-05 40.5 5.0 53 294-356 26-78 (105)
414 PF13949 ALIX_LYPXL_bnd: ALIX 88.6 49 0.0011 37.6 33.3 27 637-663 26-52 (296)
415 PRK11519 tyrosine kinase; Prov 88.6 21 0.00045 46.4 19.9 19 965-983 526-544 (719)
416 TIGR03794 NHPM_micro_HlyD NHPM 88.4 34 0.00074 41.2 20.6 17 626-642 96-112 (421)
417 PRK06620 hypothetical protein; 88.4 0.2 4.3E-06 54.2 1.2 49 933-984 11-62 (214)
418 PF06120 Phage_HK97_TLTM: Tail 88.3 50 0.0011 37.3 21.8 7 640-646 55-61 (301)
419 PTZ00121 MAEBL; Provisional 88.3 1.1E+02 0.0024 41.2 34.9 9 1163-1171 2007-2015(2084)
420 PRK09841 cryptic autophosphory 88.2 10 0.00022 49.1 16.8 15 977-991 530-544 (726)
421 KOG3091 Nuclear pore complex, 88.2 28 0.0006 41.3 18.0 34 620-653 335-368 (508)
422 PF04949 Transcrip_act: Transc 88.1 28 0.00061 34.1 18.1 141 602-744 8-158 (159)
423 PF07889 DUF1664: Protein of u 88.1 15 0.00031 35.8 13.3 54 661-714 68-121 (126)
424 TIGR01242 26Sp45 26S proteasom 88.1 3 6.5E-05 49.2 11.0 18 966-983 156-173 (364)
425 PF10234 Cluap1: Clusterin-ass 87.9 48 0.001 36.7 19.5 15 592-606 28-42 (267)
426 KOG4421 Uncharacterized conser 87.9 7.1 0.00015 43.4 12.4 66 627-692 16-81 (637)
427 cd01210 EPS8 Epidermal growth 87.8 2 4.4E-05 41.3 7.3 77 514-590 38-124 (127)
428 TIGR01010 BexC_CtrB_KpsE polys 87.8 26 0.00057 41.3 18.6 12 497-508 28-40 (362)
429 TIGR02971 heterocyst_DevB ABC 87.8 32 0.00069 39.9 19.2 13 628-640 57-69 (327)
430 PF12329 TMF_DNA_bd: TATA elem 87.8 6.5 0.00014 34.4 9.9 42 633-674 5-46 (74)
431 PF05278 PEARLI-4: Arabidopsis 87.8 32 0.0007 37.8 17.2 41 782-822 213-253 (269)
432 PRK12377 putative replication 87.7 0.37 8E-06 53.1 2.8 48 936-984 72-119 (248)
433 COG2804 PulE Type II secretory 87.7 0.29 6.3E-06 58.0 2.0 31 954-984 246-276 (500)
434 PRK10476 multidrug resistance 87.7 18 0.0004 42.3 17.2 22 625-646 85-106 (346)
435 PF08647 BRE1: BRE1 E3 ubiquit 87.5 21 0.00045 33.1 13.7 22 749-770 25-46 (96)
436 PF07889 DUF1664: Protein of u 87.3 17 0.00037 35.3 13.4 17 770-786 69-85 (126)
437 PRK15178 Vi polysaccharide exp 87.2 44 0.00095 39.8 19.4 20 756-775 315-334 (434)
438 cd01273 CED-6 CED-6 Phosphotyr 87.1 3.6 7.8E-05 41.2 9.2 74 517-590 54-134 (142)
439 cd01818 TIAM1_RBD Ubiquitin do 87.1 0.97 2.1E-05 38.8 4.2 37 286-322 3-39 (77)
440 PRK08084 DNA replication initi 86.9 0.36 7.8E-06 53.1 2.1 46 933-983 17-62 (235)
441 PRK06893 DNA replication initi 86.8 0.38 8.2E-06 52.7 2.3 46 933-983 11-56 (229)
442 KOG1962 B-cell receptor-associ 86.8 8.4 0.00018 40.8 11.8 43 658-700 155-197 (216)
443 cd01268 Numb Numb Phosphotyros 86.8 3.5 7.7E-05 40.7 8.6 73 517-590 49-129 (138)
444 KOG2196 Nuclear porin [Nuclear 86.5 50 0.0011 35.4 21.8 53 623-675 75-127 (254)
445 PRK00106 hypothetical protein; 86.5 91 0.002 38.4 26.9 7 887-893 234-240 (535)
446 PRK14086 dnaA chromosomal repl 86.5 0.34 7.3E-06 59.7 1.7 50 933-984 283-332 (617)
447 KOG3850 Predicted membrane pro 86.3 51 0.0011 37.6 17.9 132 601-742 239-378 (455)
448 KOG4335 FERM domain-containing 86.3 0.45 9.8E-06 55.3 2.5 177 380-556 202-411 (558)
449 PTZ00464 SNF-7-like protein; P 86.1 52 0.0011 35.3 20.4 160 606-772 2-174 (211)
450 KOG2751 Beclin-like protein [S 86.1 35 0.00075 39.7 17.0 129 687-820 141-269 (447)
451 cd01267 CED6_AIDA1b Phosphotyr 85.9 5.9 0.00013 39.2 9.9 82 514-595 41-130 (132)
452 COG1382 GimC Prefoldin, chaper 85.8 21 0.00046 34.1 12.8 104 683-788 7-110 (119)
453 cd01208 X11 X11 Phosphotyrosin 85.8 4.5 9.8E-05 40.4 8.7 76 519-595 51-149 (156)
454 KOG2008 BTK-associated SH3-dom 85.7 62 0.0013 35.7 28.1 209 620-829 4-229 (426)
455 COG1730 GIM5 Predicted prefold 85.6 25 0.00053 35.2 13.8 97 740-836 5-140 (145)
456 PRK07952 DNA replication prote 85.6 0.5 1.1E-05 51.9 2.4 52 933-985 67-118 (244)
457 KOG0972 Huntingtin interacting 85.6 50 0.0011 36.1 16.8 144 659-815 218-367 (384)
458 PF10267 Tmemb_cc2: Predicted 85.4 32 0.00069 40.4 16.9 126 598-723 191-318 (395)
459 PRK08116 hypothetical protein; 85.3 0.44 9.6E-06 53.4 1.9 50 933-983 80-131 (268)
460 PTZ00454 26S protease regulato 85.3 4.3 9.3E-05 48.3 10.1 148 836-983 16-196 (398)
461 KOG1103 Predicted coiled-coil 85.2 69 0.0015 35.7 26.9 260 631-895 24-304 (561)
462 KOG0163 Myosin class VI heavy 85.1 1.1E+02 0.0024 38.1 22.7 180 640-819 840-1020(1259)
463 PF05262 Borrelia_P83: Borreli 85.1 60 0.0013 39.3 19.3 161 617-777 190-354 (489)
464 PLN03229 acetyl-coenzyme A car 85.0 1.2E+02 0.0026 38.4 26.7 243 651-894 433-743 (762)
465 PRK05642 DNA replication initi 84.7 0.56 1.2E-05 51.6 2.3 47 935-983 16-62 (234)
466 KOG0972 Huntingtin interacting 84.4 39 0.00084 36.9 15.3 128 622-752 237-367 (384)
467 PRK09343 prefoldin subunit bet 84.3 37 0.00081 32.9 14.3 89 745-833 4-114 (121)
468 PRK09343 prefoldin subunit bet 84.2 42 0.00092 32.5 14.8 107 671-777 3-114 (121)
469 KOG4677 Golgi integral membran 84.1 92 0.002 36.4 29.6 246 621-870 212-466 (554)
470 PRK10476 multidrug resistance 84.1 34 0.00074 40.0 17.1 126 664-789 82-207 (346)
471 PF14197 Cep57_CLD_2: Centroso 84.0 15 0.00033 31.6 10.1 68 752-819 2-69 (69)
472 PF07106 TBPIP: Tat binding pr 83.9 11 0.00025 38.9 11.5 93 654-748 72-166 (169)
473 cd00632 Prefoldin_beta Prefold 83.9 24 0.00052 33.3 12.6 83 750-832 1-105 (105)
474 KOG4603 TBP-1 interacting prot 83.9 44 0.00096 33.6 14.3 102 769-870 79-184 (201)
475 COG1382 GimC Prefoldin, chaper 83.7 42 0.00091 32.2 14.7 104 676-781 7-110 (119)
476 PF11470 TUG-UBL1: GLUT4 regul 83.7 2.3 5E-05 36.0 5.0 51 287-338 1-51 (65)
477 PF05700 BCAS2: Breast carcino 83.6 60 0.0013 35.3 17.2 121 691-814 99-220 (221)
478 PF03962 Mnd1: Mnd1 family; I 83.6 27 0.00058 36.8 14.0 105 647-752 62-167 (188)
479 cd01274 AIDA-1b AIDA-1b Phosph 83.6 3.3 7.2E-05 40.5 6.8 73 514-587 37-117 (127)
480 cd07667 BAR_SNX30 The Bin/Amph 83.6 73 0.0016 34.8 26.6 174 633-806 51-226 (240)
481 PF11543 UN_NPL4: Nuclear pore 83.6 1.5 3.3E-05 39.0 4.1 45 281-327 3-47 (80)
482 COG1474 CDC6 Cdc6-related prot 83.5 1.5 3.3E-05 51.4 5.3 56 948-1017 23-80 (366)
483 PF11180 DUF2968: Protein of u 83.4 47 0.001 34.5 14.9 99 664-765 87-185 (192)
484 PRK14088 dnaA chromosomal repl 83.4 0.63 1.4E-05 56.2 2.1 46 935-983 102-147 (440)
485 PF07058 Myosin_HC-like: Myosi 83.2 80 0.0017 35.0 17.5 130 670-799 2-159 (351)
486 KOG1962 B-cell receptor-associ 83.2 16 0.00034 38.9 11.8 97 696-793 114-210 (216)
487 smart00283 MA Methyl-accepting 83.1 79 0.0017 34.8 37.4 240 624-863 2-260 (262)
488 smart00283 MA Methyl-accepting 83.0 80 0.0017 34.8 37.7 245 630-874 1-260 (262)
489 PF07106 TBPIP: Tat binding pr 83.0 17 0.00036 37.7 12.2 85 741-825 72-166 (169)
490 PRK03992 proteasome-activating 82.9 11 0.00023 45.0 12.2 148 835-982 1-181 (389)
491 PF14197 Cep57_CLD_2: Centroso 82.8 20 0.00044 30.9 10.3 68 759-826 2-69 (69)
492 PF15035 Rootletin: Ciliary ro 82.5 68 0.0015 33.6 19.5 162 714-875 3-178 (182)
493 PRK09087 hypothetical protein; 82.4 0.68 1.5E-05 50.5 1.7 44 935-983 18-61 (226)
494 KOG2264 Exostosin EXT1L [Signa 82.4 9.8 0.00021 44.9 10.8 72 633-704 79-150 (907)
495 KOG3647 Predicted coiled-coil 82.4 78 0.0017 34.3 18.5 162 732-894 55-224 (338)
496 PF05335 DUF745: Protein of un 82.3 69 0.0015 33.6 17.9 111 722-832 62-172 (188)
497 PF03915 AIP3: Actin interacti 82.3 1E+02 0.0022 36.8 19.5 220 645-864 69-321 (424)
498 PF03962 Mnd1: Mnd1 family; I 82.3 15 0.00032 38.8 11.4 103 789-891 61-163 (188)
499 KOG3850 Predicted membrane pro 82.3 84 0.0018 35.9 17.4 143 750-897 262-407 (455)
500 PF08826 DMPK_coil: DMPK coile 82.2 25 0.00053 29.5 10.2 61 745-805 1-61 (61)
No 1
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.5e-81 Score=725.72 Aligned_cols=349 Identities=43% Similarity=0.655 Sum_probs=309.5
Q ss_pred cccceeeecccCCCccccccCCceEEEeCCC---ceeeccC--CCCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhc
Q 000820 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLDE---FTVEHPW--KDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVD 963 (1268)
Q Consensus 890 k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~---~~~~~~~--~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~ 963 (1268)
..+++|++|+||+...+.......++..... +.+..+. .....+.|+||.||+++++|++||..+ +|+|++|++
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 3578999999999988776666555554432 2222221 123467899999999999999999985 999999999
Q ss_pred ccceEEEeecccCCCcccccccC-CCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceE
Q 000820 964 GYNVCIFAYGQTGSGKTFTIYGS-ECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLE 1042 (1268)
Q Consensus 964 G~n~~i~ayG~tgsGKT~t~~G~-~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~ 1042 (1268)
|||+||||||||||||||||+|+ +...|||||++.+||.+|........|.|+|||+|||||.|+|||+|.+. ..+.
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~--~~l~ 161 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNP--KGLE 161 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCc--CCce
Confidence 99999999999999999999999 56789999999999999998776668999999999999999999998765 4788
Q ss_pred EEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeec---CCCceeEEEEEEEe
Q 000820 1043 IKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNL---QTQSVARGKLSFVD 1119 (1268)
Q Consensus 1043 i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~---~~~~~~~s~l~~vD 1119 (1268)
|+++++.||||+|++++.|.|+++++.+|..|..+|++++|.||..|||||+||+|+|++... +.....+|+|+|||
T Consensus 162 lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rlnlvD 241 (574)
T KOG4280|consen 162 LREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKLNLVD 241 (574)
T ss_pred eeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCccccccceeeeee
Confidence 999999999999999999999999999999999999999999999999999999999998322 34466789999999
Q ss_pred cCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCcccccccccCCCCccceEEEEeCCCCCCHH
Q 000820 1120 LAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLE 1198 (1268)
Q Consensus 1120 Lagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~-~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~ 1198 (1268)
||||||..++++.|.+++|+.+||+||++||+||.||+++.+ ||||||||||+||||||||||+|+|||||+|+..+++
T Consensus 242 LagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~~~~~ 321 (574)
T KOG4280|consen 242 LAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSSDNYE 321 (574)
T ss_pred ccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchhhhhH
Confidence 999999999999999999999999999999999999999988 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccccCCCCCCChH--HHHHHHHHHHHHHHHc
Q 000820 1199 ESYNSLTYASRVRSIVNDPNKNVSSK--EVARLKRLVAYWKEQA 1240 (1268)
Q Consensus 1199 et~~tL~fa~r~~~i~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 1240 (1268)
||++||+||+|||.|+|.|.+|.+++ .+..|+.+++.++...
T Consensus 322 ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l 365 (574)
T KOG4280|consen 322 ETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKEL 365 (574)
T ss_pred HHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhh
Confidence 99999999999999999999999985 3445555555554444
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-81 Score=751.77 Aligned_cols=357 Identities=40% Similarity=0.626 Sum_probs=321.0
Q ss_pred ccceeeecccCCCccccccCCceEEEeCC---CceeeccCCCC-CceeeEeccccCCCCChhhHHhc-HHHHHHHHhccc
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLD---EFTVEHPWKDD-KVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGY 965 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~ 965 (1268)
.+|+|+|||||++.+|.......||.+.+ ++.|.+...+. -.++|+||+||+|.+.|++||.. |.|+|..|+.||
T Consensus 49 ~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~Gy 128 (1041)
T KOG0243|consen 49 VNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLEGY 128 (1041)
T ss_pred CceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhccC
Confidence 48999999999999999989888998877 24443331111 37899999999999999999987 699999999999
Q ss_pred ceEEEeecccCCCccccccc--------CCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCccc
Q 000820 966 NVCIFAYGQTGSGKTFTIYG--------SECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEK 1037 (1268)
Q Consensus 966 n~~i~ayG~tgsGKT~t~~G--------~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~ 1037 (1268)
|||||||||||+||||||.| .++.+|||||++.+||..+...+ .+|+|+|||+|+|||.++|||++....
T Consensus 129 NCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 129 NCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred CceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 99999999999999999999 46679999999999999998876 489999999999999999999987654
Q ss_pred ccceEEEe-----CCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEee---cCCCc
Q 000820 1038 RLKLEIKK-----DSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTN---LQTQS 1109 (1268)
Q Consensus 1038 ~~~~~i~~-----~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~---~~~~~ 1109 (1268)
...+.+.. +.+|+|+|.|+.++.|.++.|++.+|.+|...|++++|.||..|||||+||+|+|.... .+.+-
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~~geel 286 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTPEGEEL 286 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCCcchhh
Confidence 34455544 45799999999999999999999999999999999999999999999999999985432 23445
Q ss_pred eeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEE
Q 000820 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVN 1189 (1268)
Q Consensus 1110 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~ 1189 (1268)
+..|||+||||||||...++|+.+.|.+|+..||+||.+||+||.||.++.+|||||+|||||||||||||.++|+||+|
T Consensus 287 vK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT~iIAT 366 (1041)
T KOG0243|consen 287 VKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKTCIIAT 366 (1041)
T ss_pred HhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCceeEEEEE
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccCCCCCCC----------hHHHHHHHHHHHHHHHHcCCCCChhHH
Q 000820 1190 VSPAESNLEESYNSLTYASRVRSIVNDPNKNVS----------SKEVARLKRLVAYWKEQAGKKGDYEEL 1249 (1268)
Q Consensus 1190 vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~~~~~ 1249 (1268)
|||+..+++||++||.||.|||+|+|+|.+|.. ..||.+||+.|.+.++..|-.-..+.+
T Consensus 367 iSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaReKnGvyisee~y 436 (1041)
T KOG0243|consen 367 ISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAREKNGVYISEERY 436 (1041)
T ss_pred eCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhhCceEechHHH
Confidence 999999999999999999999999999999943 258999999999999999877655554
No 3
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=7.5e-79 Score=733.25 Aligned_cols=420 Identities=43% Similarity=0.651 Sum_probs=364.9
Q ss_pred HHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccccceeeec
Q 000820 820 LASRNMDLAGLESHLKELEE-LREMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIRVYCR 898 (1268)
Q Consensus 820 l~~l~~~~~~l~~~~~~l~e-l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~~~~R 898 (1268)
+..++.++..++.....++. ......+.++..........++......+.+.+ .+...+++|+|++.+++|+|||+||
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkGnIRV~CR 321 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKGNIRVFCR 321 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCceEEEE
Confidence 33333333333333333331 133444444455555555666666666777777 7779999999999999999999999
Q ss_pred ccCCCccccccCCceEEEeCC--CceeeccCCCCCc--eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecc
Q 000820 899 LRPLNEKEDAEKERYVLTSLD--EFTVEHPWKDDKV--KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQ 974 (1268)
Q Consensus 899 vRp~~~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~ 974 (1268)
|||+.+.+.......++..++ ++.+..++..++. ..|.||+||+|.++|++||.++.|+|+++++|||+|||||||
T Consensus 322 vRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQ 401 (670)
T KOG0239|consen 322 VRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGYNVCIFAYGQ 401 (670)
T ss_pred ecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCcceeEEEecc
Confidence 999998887654444544443 3556566555442 369999999999999999999999999999999999999999
Q ss_pred cCCCccccccc-CCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeCCCCcEEe
Q 000820 975 TGSGKTFTIYG-SECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLV 1053 (1268)
Q Consensus 975 tgsGKT~t~~G-~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~~~~~~~v 1053 (1268)
|||||||||.| ++.++|||||++++||..+......|.|.+.++|+|||||.|+|||.+.. ...++.|+.++++..+|
T Consensus 402 TGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~-~~~k~~I~~~~~~~~~V 480 (670)
T KOG0239|consen 402 TGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES-YVGKLEIVDDAEGNLMV 480 (670)
T ss_pred cCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc-cccceeEEEcCCCceec
Confidence 99999999999 68899999999999999999888899999999999999999999998765 45679999999999999
Q ss_pred cCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCCccccCCCCch
Q 000820 1054 ENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERVKKSGSSG 1133 (1268)
Q Consensus 1054 ~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~ 1133 (1268)
.|++.+.|.+.+++..+++.|..+|++++|.+|.+|||||+||+|+|...+..+.....|.|+|||||||||+++++.+|
T Consensus 481 ~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLAGSER~~~s~~tG 560 (670)
T KOG0239|consen 481 PLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLAGSERVSKSGVTG 560 (670)
T ss_pred ccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecccCcccCcCCCch
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred hhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHHHHHHHhccc
Q 000820 1134 NQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASRVRSI 1213 (1268)
Q Consensus 1134 ~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL~fa~r~~~i 1213 (1268)
+|++|+++||+||++||+||.||+++..||||||||||+||+++|||+++|+|+++|||...++.||+++|+||+|++.+
T Consensus 561 ~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~ 640 (670)
T KOG0239|consen 561 ERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSV 640 (670)
T ss_pred hhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCC-CCChHHHHHHHHHHHHHHHHcC
Q 000820 1214 VNDPNK-NVSSKEVARLKRLVAYWKEQAG 1241 (1268)
Q Consensus 1214 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 1241 (1268)
...+.. +....+...+++.+..++...+
T Consensus 641 ~lG~a~~~~~~~~~~~~~~~~~~~~~~~~ 669 (670)
T KOG0239|consen 641 ELGSARKQVSTSDDVSLKRFGQLEKLSTA 669 (670)
T ss_pred ecccccccccccchhhhhhhhhhhhhhhc
Confidence 998866 6777788888888887766543
No 4
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.1e-81 Score=728.95 Aligned_cols=350 Identities=37% Similarity=0.632 Sum_probs=320.5
Q ss_pred ccceeeecccCCCccccccCCceEEEeCC-CceeeccCCCCCceeeEeccccCC-------CCChhhHHhcH-HHHHHHH
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLD-EFTVEHPWKDDKVKQHMYDQVFDG-------YATQEDVFEDT-RYLVQSA 961 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~fd~vf~~-------~~~q~~v~~~~-~~~v~~~ 961 (1268)
..+.|.|||||++.+|......+|+.+.+ +.++.++.+......|+||+.|+. .++|..||+++ .++++++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~A 83 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHA 83 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHH
Confidence 36899999999999999999999999886 467777766555667999999975 46999999997 8999999
Q ss_pred hcccceEEEeecccCCCcccccccCC--CCCCCcHHHHHHHHHHHHhc-CCceEEEEEEEeeeecccccccCCC-CCccc
Q 000820 962 VDGYNVCIFAYGQTGSGKTFTIYGSE--CNPGITPRAISELFRILKKE-NNKFSFSLKAYMVELYQDTLVDLLL-PRNEK 1037 (1268)
Q Consensus 962 ~~G~n~~i~ayG~tgsGKT~t~~G~~--~~~Gli~r~~~~lf~~~~~~-~~~~~~~v~~s~~eiy~e~v~DLL~-~~~~~ 1037 (1268)
++|||+||||||||||||||||+|-. .++|||||+|++||..+... ++.+.|+|.|||+|||||+|+|||+ |. .
T Consensus 84 fEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~--~ 161 (1221)
T KOG0245|consen 84 FEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK--S 161 (1221)
T ss_pred hcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC--C
Confidence 99999999999999999999999987 89999999999999999763 4568999999999999999999998 43 3
Q ss_pred ccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC----CCceeEE
Q 000820 1038 RLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ----TQSVARG 1113 (1268)
Q Consensus 1038 ~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~----~~~~~~s 1113 (1268)
+..|++++.+--|+||++|+.+.|+|..|+..++..|++.|++++|+||+.|||||+||+|...+.... -.+..+|
T Consensus 162 kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~sek~S 241 (1221)
T KOG0245|consen 162 KGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLDSEKVS 241 (1221)
T ss_pred CCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCcceeee
Confidence 568999999999999999999999999999999999999999999999999999999999999876543 2356889
Q ss_pred EEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC-------CCCCCCCCcccccccccCCCCccceE
Q 000820 1114 KLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS-------QHIPYRNHKLTMLMSDSLGGNAKTLM 1186 (1268)
Q Consensus 1114 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~-------~~vpyr~skLT~lL~~~lgg~~~t~~ 1186 (1268)
+|+|||||||||+..+|+.|+|+|||++||+||.+||+||+||++.+ .+||||||.||+||++.|||||+|+|
T Consensus 242 KIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGNSKTaM 321 (1221)
T KOG0245|consen 242 KISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGNSKTAM 321 (1221)
T ss_pred eeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCcchhhh
Confidence 99999999999999999999999999999999999999999998643 38999999999999999999999999
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCh--HHHHHHHHHHHHHHHHcCC
Q 000820 1187 FVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSS--KEVARLKRLVAYWKEQAGK 1242 (1268)
Q Consensus 1187 i~~vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 1242 (1268)
|+++||++.||+|||+|||||.|||.|+|.+++|+++ +-|..||++|+.+|+....
T Consensus 322 IAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~ 379 (1221)
T KOG0245|consen 322 IAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRA 379 (1221)
T ss_pred hhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999997 5788999999988876643
No 5
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=6.4e-77 Score=663.14 Aligned_cols=330 Identities=40% Similarity=0.625 Sum_probs=307.2
Q ss_pred ccccceeeecccCCCccccccCCceEEEeCC-CceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccc
Q 000820 889 MKGKIRVYCRLRPLNEKEDAEKERYVLTSLD-EFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYN 966 (1268)
Q Consensus 889 ~k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n 966 (1268)
....|+|+||+||++..|...+...+..... +-++..-..+. ++.|.||+||+|+++|++||+. +.|+|++|+.|||
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKE-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccc-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 3468999999999999998888777666554 44444333222 3899999999999999999997 5999999999999
Q ss_pred eEEEeecccCCCcccccccCCC---CCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEE
Q 000820 967 VCIFAYGQTGSGKTFTIYGSEC---NPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEI 1043 (1268)
Q Consensus 967 ~~i~ayG~tgsGKT~t~~G~~~---~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i 1043 (1268)
+||||||||||||||||.|... ..|||||++++||.+|.......+|+|+|||+|||+|+++|||+|. +.++.+
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~---k~nlsv 160 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE---KTNLSV 160 (607)
T ss_pred eeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc---cCCcee
Confidence 9999999999999999999866 4699999999999999998888899999999999999999999865 457999
Q ss_pred EeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCC
Q 000820 1044 KKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGS 1123 (1268)
Q Consensus 1044 ~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLags 1123 (1268)
.+|.+.+++|.|++++.|.++++++.+++.|..+|+++.|.||.+|||||+||+|+|++.+..+.....|+|+|||||||
T Consensus 161 heDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDLaGS 240 (607)
T KOG0240|consen 161 HEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDLAGS 240 (607)
T ss_pred ecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCC-CCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHH
Q 000820 1124 ERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG-SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYN 1202 (1268)
Q Consensus 1124 e~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~-~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~ 1202 (1268)
|+++++|+.|.-+.|+.+||+||+|||+||+||+.+ ..|||||||||||||+|+|||||+|++|+|++|+..+..||.+
T Consensus 241 EkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~ET~S 320 (607)
T KOG0240|consen 241 EKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAETKS 320 (607)
T ss_pred cccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCcccccccccc
Confidence 999999999999999999999999999999999998 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCCCC
Q 000820 1203 SLTYASRVRSIVNDPNKNVS 1222 (1268)
Q Consensus 1203 tL~fa~r~~~i~~~~~~~~~ 1222 (1268)
||+|+.||+.|+|.+.+|..
T Consensus 321 Tl~fg~rak~ikN~v~~n~e 340 (607)
T KOG0240|consen 321 TLRFGNRAKTIKNTVWVNLE 340 (607)
T ss_pred chhhccccccccchhhhhhH
Confidence 99999999999999999864
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=3.3e-74 Score=695.04 Aligned_cols=339 Identities=36% Similarity=0.618 Sum_probs=298.3
Q ss_pred cccceeeecccCCCccccccCCceEEEeCCCceeeccCCCCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhcccceE
Q 000820 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVDGYNVC 968 (1268)
Q Consensus 890 k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~ 968 (1268)
.++|+|+|||||+.+.|. +..+++...+. ++.. ..+.|.||+||+++++|++||+.+ .|+|+++++|||+|
T Consensus 97 ds~VkV~VRVRPl~~~E~--g~~iV~~~s~d-sl~I-----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 97 DSGVKVIVRMKPLNKGEE--GEMIVQKMSND-SLTI-----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred CCCeEEEEEcCCCCCccC--CCeeEEEcCCC-eEEE-----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 469999999999988753 33344433332 2221 136899999999999999999985 89999999999999
Q ss_pred EEeecccCCCcccccccCC----------CCCCCcHHHHHHHHHHHHhc-----CCceEEEEEEEeeeecccccccCCCC
Q 000820 969 IFAYGQTGSGKTFTIYGSE----------CNPGITPRAISELFRILKKE-----NNKFSFSLKAYMVELYQDTLVDLLLP 1033 (1268)
Q Consensus 969 i~ayG~tgsGKT~t~~G~~----------~~~Gli~r~~~~lf~~~~~~-----~~~~~~~v~~s~~eiy~e~v~DLL~~ 1033 (1268)
|||||||||||||||+|+. .++|||||++++||..+... ...+.|.|+|||+|||||.|+|||.+
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 9999999999999999964 46899999999999998643 23467999999999999999999987
Q ss_pred CcccccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC----CCc
Q 000820 1034 RNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ----TQS 1109 (1268)
Q Consensus 1034 ~~~~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~----~~~ 1109 (1268)
.. ..+.|++++.++++|.|++++.|.|++|+..+|..|..+|++++|.+|..|||||+||+|.|++.... ...
T Consensus 249 ~~---k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss 325 (1320)
T PLN03188 249 SQ---KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVADGLSS 325 (1320)
T ss_pred cc---CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCCceeEEEEEEEeecccCCCCcc
Confidence 53 35889999999999999999999999999999999999999999999999999999999999865422 234
Q ss_pred eeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhC-----CCCCCCCCCCcccccccccCCCCccc
Q 000820 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSS-----GSQHIPYRNHKLTMLMSDSLGGNAKT 1184 (1268)
Q Consensus 1110 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~-----~~~~vpyr~skLT~lL~~~lgg~~~t 1184 (1268)
...|+|+|||||||||..++++.|.+++|+.+||+||++||+||.+|+. +..|||||+||||+||+|+|||||+|
T Consensus 326 ~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HIPYRDSKLTrLLQDSLGGNSKT 405 (1320)
T PLN03188 326 FKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHIPYRDSRLTFLLQESLGGNAKL 405 (1320)
T ss_pred eEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcCCCCcchHHHHHHHhcCCCceE
Confidence 5689999999999999999999999999999999999999999999975 34699999999999999999999999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCh--------HHHHHHHHHHHHHHHH
Q 000820 1185 LMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSS--------KEVARLKRLVAYWKEQ 1239 (1268)
Q Consensus 1185 ~~i~~vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 1239 (1268)
+|||||||+..+++||++||+||+|||+|+|.|.+|... +.|..|+.++..++..
T Consensus 406 vMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~rLK~~ 468 (1320)
T PLN03188 406 AMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQRVKAN 468 (1320)
T ss_pred EEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999753 2566777777777665
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.2e-73 Score=656.11 Aligned_cols=319 Identities=40% Similarity=0.671 Sum_probs=296.3
Q ss_pred cceeeecccCCCccccccCCceEEEeCCCcee-eccCC-----------CCCceeeEeccccCCCCChhhHHhcH-HHHH
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDEFTV-EHPWK-----------DDKVKQHMYDQVFDGYATQEDVFEDT-RYLV 958 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v 958 (1268)
+|+|+|||||+.+.|...+...++...+..++ ..|.. ....+.|.||+||+++++|++||+.+ +|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999988888888877665433 33322 22368999999999999999999985 8999
Q ss_pred HHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccc
Q 000820 959 QSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKR 1038 (1268)
Q Consensus 959 ~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~ 1038 (1268)
+++++|||+||||||||||||||||+|++.++|||||++++||+.+........|.|++||+|||||+|+|||.+. .
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~---~ 157 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS---S 157 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC---C
Confidence 9999999999999999999999999999999999999999999999987767899999999999999999999875 3
Q ss_pred cceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC---CCceeEEEE
Q 000820 1039 LKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ---TQSVARGKL 1115 (1268)
Q Consensus 1039 ~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~---~~~~~~s~l 1115 (1268)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|+|.+.+.. ......|+|
T Consensus 158 ~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~~~s~l 237 (338)
T cd01370 158 GPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQVRIGKL 237 (338)
T ss_pred CCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcEEEEEE
Confidence 46899999999999999999999999999999999999999999999999999999999999988765 566788999
Q ss_pred EEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC---CCCCCCCCcccccccccCCCCccceEEEEeCC
Q 000820 1116 SFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS---QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSP 1192 (1268)
Q Consensus 1116 ~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~---~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp 1192 (1268)
+|||||||||..+++..|.+++|+.+||+||.+|++||.+|+.+. .|||||+||||+||+|+|||||+|+||+||||
T Consensus 238 ~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I~~vsp 317 (338)
T cd01370 238 SLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMIANISP 317 (338)
T ss_pred EEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEEEEeCC
Confidence 999999999999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhccc
Q 000820 1193 AESNLEESYNSLTYASRVRSI 1213 (1268)
Q Consensus 1193 ~~~~~~et~~tL~fa~r~~~i 1213 (1268)
+..+++||++||+||+|||+|
T Consensus 318 ~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 318 SSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred chhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999987
No 8
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.9e-73 Score=690.27 Aligned_cols=329 Identities=43% Similarity=0.696 Sum_probs=297.6
Q ss_pred cccceeeecccCCCccccccCCceEEEeCCCce-eeccCCC--C--CceeeEeccccCCCCChhhHHhc-HHHHHHHHhc
Q 000820 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFT-VEHPWKD--D--KVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVD 963 (1268)
Q Consensus 890 k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~-~~~~~~~--~--~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~ 963 (1268)
..+|.|.||+||+.+.+...+..+.....+... +...... . .+..|.||+||+++++|++||+. ++|+|.+++.
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 358999999999998865555555444433322 2221111 1 15789999999999999999997 7999999999
Q ss_pred ccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEE
Q 000820 964 GYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEI 1043 (1268)
Q Consensus 964 G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i 1043 (1268)
|||+||||||||||||||||.|.+.+|||||+++.+||+.|.... ...|.|++||+|||||.|+|||+|.++ .+.|
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~~---~L~i 160 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDGG---DLRL 160 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCCC---CceE
Confidence 999999999999999999999999999999999999999999877 569999999999999999999988764 4899
Q ss_pred EeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCC
Q 000820 1044 KKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGS 1123 (1268)
Q Consensus 1044 ~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLags 1123 (1268)
++|+.++++|.|+++..|.|.+++..+|..|..+|+++.|.+|..|||||+||+|.|++....... ..|+|+|||||||
T Consensus 161 rED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~-~~s~L~lIDLAGS 239 (675)
T KOG0242|consen 161 REDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASS-RVSKLNLIDLAGS 239 (675)
T ss_pred eEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccc-hhheehhhhhhhh
Confidence 999999999999999999999999999999999999999999999999999999999987755443 6789999999999
Q ss_pred ccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCC--CCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHH
Q 000820 1124 ERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG--SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESY 1201 (1268)
Q Consensus 1124 e~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~--~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~ 1201 (1268)
||+.++++.|.|++||.+||+||.+||+||.+|+.+ ..||||||||||||||++|||||+|+|||||+|+..+++||.
T Consensus 240 ERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~eT~ 319 (675)
T KOG0242|consen 240 ERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYEETK 319 (675)
T ss_pred hhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHHHHH
Confidence 999999999999999999999999999999999988 469999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCCCCCh
Q 000820 1202 NSLTYASRVRSIVNDPNKNVSS 1223 (1268)
Q Consensus 1202 ~tL~fa~r~~~i~~~~~~~~~~ 1223 (1268)
+||.||+|||.|++++.+|+..
T Consensus 320 nTL~fAsrak~i~~~~~~n~~~ 341 (675)
T KOG0242|consen 320 NTLKFASRAKEITTKAQVNVIL 341 (675)
T ss_pred HHHHHHHHhhhcccccccceec
Confidence 9999999999999999999653
No 9
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=3e-72 Score=644.39 Aligned_cols=317 Identities=41% Similarity=0.664 Sum_probs=284.3
Q ss_pred ccceeeecccCCCccccccCCceEEEeCC-CceeeccCCCCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhcccceE
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLD-EFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVDGYNVC 968 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~ 968 (1268)
++|+|+|||||+.+.|...+...++...+ ...+.+. ...+.|.||+||+++++|++||+.+ +|+|+++++|||+|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~t 77 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHS---HPPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGS 77 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeC---CCCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCcee
Confidence 37999999999998887666665555543 3333222 1267999999999999999999985 89999999999999
Q ss_pred EEeecccCCCcccccccCCC--------CCCCcHHHHHHHHHHHHhc----CCceEEEEEEEeeeecccccccCCCCCcc
Q 000820 969 IFAYGQTGSGKTFTIYGSEC--------NPGITPRAISELFRILKKE----NNKFSFSLKAYMVELYQDTLVDLLLPRNE 1036 (1268)
Q Consensus 969 i~ayG~tgsGKT~t~~G~~~--------~~Gli~r~~~~lf~~~~~~----~~~~~~~v~~s~~eiy~e~v~DLL~~~~~ 1036 (1268)
|||||||||||||||+|+.. ++|||||++++||..+... .....|.|++||+|||||+|+|||.+..
T Consensus 78 i~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~- 156 (337)
T cd01373 78 IFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS- 156 (337)
T ss_pred EEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC-
Confidence 99999999999999999753 6899999999999988653 2456899999999999999999998754
Q ss_pred cccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCC--ceeEEE
Q 000820 1037 KRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQ--SVARGK 1114 (1268)
Q Consensus 1037 ~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~--~~~~s~ 1114 (1268)
..+.+++++.++++|.|++++.|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+.+.... ....|+
T Consensus 157 --~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~ 234 (337)
T cd01373 157 --RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNIRTSR 234 (337)
T ss_pred --CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcEEEEE
Confidence 3688999999999999999999999999999999999999999999999999999999999987654432 456799
Q ss_pred EEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhC----CCCCCCCCCCcccccccccCCCCccceEEEEe
Q 000820 1115 LSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSS----GSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNV 1190 (1268)
Q Consensus 1115 l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~----~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~v 1190 (1268)
|+|||||||||..+++..|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||||+|+|||||
T Consensus 235 l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~I~~v 314 (337)
T cd01373 235 LNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTIIANV 314 (337)
T ss_pred EEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999974 46799999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhccc
Q 000820 1191 SPAESNLEESYNSLTYASRVRSI 1213 (1268)
Q Consensus 1191 sp~~~~~~et~~tL~fa~r~~~i 1213 (1268)
||+..+++||++||+||+|||+|
T Consensus 315 sP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 315 SPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred CCCcccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987
No 10
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=1.1e-71 Score=640.97 Aligned_cols=315 Identities=34% Similarity=0.583 Sum_probs=286.7
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCCceee--ccCC----------CCCceeeEeccccCCCCChhhHHhcH-HHH
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVE--HPWK----------DDKVKQHMYDQVFDGYATQEDVFEDT-RYL 957 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~--~~~~----------~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~ 957 (1268)
.+|+|+|||||+.+.|...+...++...+..++. .|.. ....+.|.||+||+++++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~ 80 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPL 80 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHH
Confidence 4799999999999988776677677666554443 2211 22467999999999999999999985 899
Q ss_pred HHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcc-
Q 000820 958 VQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNE- 1036 (1268)
Q Consensus 958 v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~- 1036 (1268)
|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|++||+|||||+|+|||.+.+.
T Consensus 81 v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~~~ 154 (345)
T cd01368 81 VQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSPSS 154 (345)
T ss_pred HHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcccc
Confidence 9999999999999999999999999999999999999999999999875 899999999999999999988653
Q ss_pred --cccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC--------
Q 000820 1037 --KRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ-------- 1106 (1268)
Q Consensus 1037 --~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~-------- 1106 (1268)
...++.|+++++++++|.|++++.|.|++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+.+..
T Consensus 155 ~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~~~ 234 (345)
T cd01368 155 TKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVDQD 234 (345)
T ss_pred ccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccccC
Confidence 2457899999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCceeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhC------CCCCCCCCCCcccccccccCCC
Q 000820 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSS------GSQHIPYRNHKLTMLMSDSLGG 1180 (1268)
Q Consensus 1107 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~------~~~~vpyr~skLT~lL~~~lgg 1180 (1268)
......|+|+|||||||||..++++.|.+++|+.+||+||++|++||.+|+. +..|||||+||||+||+|+|||
T Consensus 235 ~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l~g 314 (345)
T cd01368 235 KDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYFDG 314 (345)
T ss_pred CCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhcCC
Confidence 2456789999999999999999999999999999999999999999999986 4679999999999999999999
Q ss_pred CccceEEEEeCCCCCCHHHHHHHHHHHHHhc
Q 000820 1181 NAKTLMFVNVSPAESNLEESYNSLTYASRVR 1211 (1268)
Q Consensus 1181 ~~~t~~i~~vsp~~~~~~et~~tL~fa~r~~ 1211 (1268)
||+|+||+||||+..+++||++||+||.+|+
T Consensus 315 ~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 315 EGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999985
No 11
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.7e-72 Score=643.05 Aligned_cols=351 Identities=39% Similarity=0.630 Sum_probs=317.9
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCCceeeccCC------C-CCceeeEeccccCCC-------CChhhHHhcH-H
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWK------D-DKVKQHMYDQVFDGY-------ATQEDVFEDT-R 955 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~f~fd~vf~~~-------~~q~~v~~~~-~ 955 (1268)
.+|+|.|||||++.+|..-...+++.+....++.++.. . ..+++|.||++|.+. ++|++||..+ .
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~ 83 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGE 83 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcch
Confidence 58999999999999999888888888876655554432 1 347899999999853 6899999987 6
Q ss_pred HHHHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhc-CCceEEEEEEEeeeecccccccCCCCC
Q 000820 956 YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKE-NNKFSFSLKAYMVELYQDTLVDLLLPR 1034 (1268)
Q Consensus 956 ~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~-~~~~~~~v~~s~~eiy~e~v~DLL~~~ 1034 (1268)
.+|+++|+|||+||||||||||||||||+|..+.||||||++..||..|... +....|.|.+||+|||||+++|||+|.
T Consensus 84 ~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdPk 163 (1714)
T KOG0241|consen 84 GILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDPK 163 (1714)
T ss_pred HHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCCC
Confidence 6999999999999999999999999999999999999999999999999764 345789999999999999999999998
Q ss_pred cccccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC----CCce
Q 000820 1035 NEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ----TQSV 1110 (1268)
Q Consensus 1035 ~~~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~----~~~~ 1110 (1268)
.. +..+.+++++--++||.||+...|+|++|+-.++..|+++|+++.|.||..|||||+||.|.|.++-.+ ...-
T Consensus 164 ~s-sqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg~Sge 242 (1714)
T KOG0241|consen 164 GS-SQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTGHSGE 242 (1714)
T ss_pred CC-cceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccCcchh
Confidence 65 468999999999999999999999999999999999999999999999999999999999999876433 3344
Q ss_pred eEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCC------CCCCCCCCCcccccccccCCCCccc
Q 000820 1111 ARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG------SQHIPYRNHKLTMLMSDSLGGNAKT 1184 (1268)
Q Consensus 1111 ~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~------~~~vpyr~skLT~lL~~~lgg~~~t 1184 (1268)
..|+|++||||||||..++++.|.+++|+.+||+||++||.||+||++. +++||||||.||+||+|+|||||+|
T Consensus 243 KvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGGNsrT 322 (1714)
T KOG0241|consen 243 KVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGGNSRT 322 (1714)
T ss_pred heeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCCCcee
Confidence 6799999999999999999999999999999999999999999999863 4599999999999999999999999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCCCCh--HHHHHHHHHHHHHHHHcCC
Q 000820 1185 LMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKNVSS--KEVARLKRLVAYWKEQAGK 1242 (1268)
Q Consensus 1185 ~~i~~vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 1242 (1268)
+||+||||+..+|+||++|||||.|||+|+|+.++|.++ .-|..|+.+|..++++...
T Consensus 323 vMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ 382 (1714)
T KOG0241|consen 323 VMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQ 382 (1714)
T ss_pred EEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987 4688888888877766654
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4.6e-71 Score=641.11 Aligned_cols=330 Identities=39% Similarity=0.681 Sum_probs=302.9
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCC-ceeeccCC----CCCceeeEeccccCCC-------CChhhHHhcH-HHH
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDE-FTVEHPWK----DDKVKQHMYDQVFDGY-------ATQEDVFEDT-RYL 957 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~f~fd~vf~~~-------~~q~~v~~~~-~~~ 957 (1268)
++|+|+||+||+...|...+...++...+. +++..+.. ....+.|.||+||+++ ++|++||+.+ .|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999888888877777664 44444432 3457899999999998 9999999985 899
Q ss_pred HHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCC-ceEEEEEEEeeeecccccccCCCCCcc
Q 000820 958 VQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYMVELYQDTLVDLLLPRNE 1036 (1268)
Q Consensus 958 v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~~v~~s~~eiy~e~v~DLL~~~~~ 1036 (1268)
|+++++|+|+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|++||+|||||+|+|||++...
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 9999999999999999999999999999999999999999999999987554 578999999999999999999998764
Q ss_pred cccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC----CCceeE
Q 000820 1037 KRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ----TQSVAR 1112 (1268)
Q Consensus 1037 ~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~----~~~~~~ 1112 (1268)
....+.+++++.++++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.... ......
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~ 240 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKV 240 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEE
Confidence 5567899999999999999999999999999999999999999999999999999999999999987654 446678
Q ss_pred EEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCC--------CCCCCCCCCcccccccccCCCCccc
Q 000820 1113 GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSG--------SQHIPYRNHKLTMLMSDSLGGNAKT 1184 (1268)
Q Consensus 1113 s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~--------~~~vpyr~skLT~lL~~~lgg~~~t 1184 (1268)
|+|+|||||||||..+++..|.+++|+..||+||++|++||.+|+.+ ..|||||+||||+||+|+|||||+|
T Consensus 241 s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~lgg~s~t 320 (356)
T cd01365 241 SKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENLGGNSKT 320 (356)
T ss_pred EEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhcCCCceE
Confidence 99999999999999999999999999999999999999999999864 4799999999999999999999999
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhcccccCCCCC
Q 000820 1185 LMFVNVSPAESNLEESYNSLTYASRVRSIVNDPNKN 1220 (1268)
Q Consensus 1185 ~~i~~vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~ 1220 (1268)
+||+||||...+++||++||+||+|+++|+|.|.+|
T Consensus 321 ~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 321 AMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999876
No 13
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.7e-69 Score=625.82 Aligned_cols=329 Identities=40% Similarity=0.610 Sum_probs=299.5
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCC-ceeeccCC---CCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhccc
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDE-FTVEHPWK---DDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGY 965 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~ 965 (1268)
.+|+|+||+||+...|...+...++...+. .++..... ....+.|.||+||+++++|++||+. +.|+|+++++||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999877777777777654 33333222 2257899999999999999999998 599999999999
Q ss_pred ceEEEeecccCCCcccccccCCC-----------CCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCC
Q 000820 966 NVCIFAYGQTGSGKTFTIYGSEC-----------NPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPR 1034 (1268)
Q Consensus 966 n~~i~ayG~tgsGKT~t~~G~~~-----------~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~ 1034 (1268)
|+||||||+|||||||||+|+.. ++|||||++.+||+.+... ...|.|++||+|||+|.|+|||++.
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~~ 159 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSSE 159 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCCc
Confidence 99999999999999999999843 4899999999999999876 4589999999999999999999987
Q ss_pred cccccceEEEeC--CCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC---CCc
Q 000820 1035 NEKRLKLEIKKD--SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ---TQS 1109 (1268)
Q Consensus 1035 ~~~~~~~~i~~~--~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~---~~~ 1109 (1268)
.....++.++++ ..++++|.|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|.|.+.... ...
T Consensus 160 ~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~ 239 (352)
T cd01364 160 SDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTISGEEL 239 (352)
T ss_pred cccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCCCCcc
Confidence 655667899999 589999999999999999999999999999999999999999999999999999876543 334
Q ss_pred eeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEE
Q 000820 1110 VARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVN 1189 (1268)
Q Consensus 1110 ~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~ 1189 (1268)
...|+|+||||||||+..+.++.+.+++|+..||+||.+|++||.+|+.+..|||||+||||+||+|+|||||+|+||+|
T Consensus 240 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~~I~~ 319 (352)
T cd01364 240 VKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTSIIAT 319 (352)
T ss_pred EEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEEEEEE
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCCHHHHHHHHHHHHHhcccccCCCCCC
Q 000820 1190 VSPAESNLEESYNSLTYASRVRSIVNDPNKNV 1221 (1268)
Q Consensus 1190 vsp~~~~~~et~~tL~fa~r~~~i~~~~~~~~ 1221 (1268)
|||...+++||++||+||+|+++|+|.|.+|.
T Consensus 320 vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 320 ISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred eCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 99999999999999999999999999999885
No 14
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=2.1e-69 Score=617.71 Aligned_cols=312 Identities=39% Similarity=0.597 Sum_probs=284.4
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCC--ceeeccCCC------CCceeeEeccccCCCCChhhHHhc-HHHHHHHH
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDE--FTVEHPWKD------DKVKQHMYDQVFDGYATQEDVFED-TRYLVQSA 961 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~ 961 (1268)
.+|+|+|||||+.+.|...+...++...+. +++..+... ...+.|.||+||+++++|++||+. +.|+|+++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 479999999999998887777777666654 333322111 125789999999999999999998 59999999
Q ss_pred hcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccce
Q 000820 962 VDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKL 1041 (1268)
Q Consensus 962 ~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~ 1041 (1268)
++|+|+||||||||||||||||+|+..++|||||++++||+.+.... ..|.|++||+|||+|.|+|||++ ...+
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~----~~~l 154 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND----RKRL 154 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC----ccce
Confidence 99999999999999999999999999999999999999999998765 47999999999999999999987 3468
Q ss_pred EEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecC
Q 000820 1042 EIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLA 1121 (1268)
Q Consensus 1042 ~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLa 1121 (1268)
.+++++.++++|.|+++++|.|++|++.+|..|..+|++++|.+|..|||||+||+|.|.+.+. ....|+|+|||||
T Consensus 155 ~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~---~~~~s~l~~vDLA 231 (322)
T cd01367 155 SVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKL---NKLLGKLSFIDLA 231 (322)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecC---CeeEEEEEEeecC
Confidence 9999999999999999999999999999999999999999999999999999999999998764 5678999999999
Q ss_pred CCccccCCC-CchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHH
Q 000820 1122 GSERVKKSG-SSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEES 1200 (1268)
Q Consensus 1122 gse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et 1200 (1268)
|||+..+++ ..+.+++|+.+||+||.+|++||.+|+.+..|||||+||||+||+|+|||||+|+||+||||+..+++||
T Consensus 232 GsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~eT 311 (322)
T cd01367 232 GSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCEHT 311 (322)
T ss_pred CccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHH
Confidence 999998765 5688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 000820 1201 YNSLTYASRVR 1211 (1268)
Q Consensus 1201 ~~tL~fa~r~~ 1211 (1268)
++||+||+|+|
T Consensus 312 l~tL~fa~r~k 322 (322)
T cd01367 312 LNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHhhC
Confidence 99999999986
No 15
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=1.5e-68 Score=610.60 Aligned_cols=312 Identities=35% Similarity=0.606 Sum_probs=282.2
Q ss_pred cceeeecccCCCccccccCCceEEEeCC------CceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcc
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLD------EFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDG 964 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~------~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G 964 (1268)
+|+|++||||+.+.|.... .++....+ .+.+..+......+.|.||+||+++++|++||+. +.|+|+.+++|
T Consensus 1 ~i~V~vRvRP~~~~e~~~~-~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G 79 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS-SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSG 79 (319)
T ss_pred CcEEEEEeCcCCccccCCC-ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCC
Confidence 5899999999998884432 23323222 2333444333457899999999999999999998 69999999999
Q ss_pred cceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEE
Q 000820 965 YNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIK 1044 (1268)
Q Consensus 965 ~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~ 1044 (1268)
+|+||||||+|||||||||+|+..++|||||++++||+.++... ..+.|++||+|||+|.|+|||.+.. ..+.|+
T Consensus 80 ~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~~---~~l~i~ 154 (319)
T cd01376 80 QNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPAK---KELPIR 154 (319)
T ss_pred CceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCCC---CCceEE
Confidence 99999999999999999999999999999999999999887654 5799999999999999999998753 358899
Q ss_pred eCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCCc
Q 000820 1045 KDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSE 1124 (1268)
Q Consensus 1045 ~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLagse 1124 (1268)
+++.+++++.|+++++|.|++|+..++..|.++|.+++|.+|..|||||+||+|.|.+.+.. ....|+|+||||||||
T Consensus 155 ~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~--~~~~s~l~~VDLAGsE 232 (319)
T cd01376 155 EDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASN--IQLEGKLNLIDLAGSE 232 (319)
T ss_pred EcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCC--ceEEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999887543 3678999999999999
Q ss_pred cccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHH
Q 000820 1125 RVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSL 1204 (1268)
Q Consensus 1125 ~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL 1204 (1268)
+..+++..|.+++|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||||+|+||+||||...+++||++||
T Consensus 233 ~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL 312 (319)
T cd01376 233 DNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLSTL 312 (319)
T ss_pred cccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 000820 1205 TYASRVR 1211 (1268)
Q Consensus 1205 ~fa~r~~ 1211 (1268)
+||+|+|
T Consensus 313 ~fa~r~~ 319 (319)
T cd01376 313 NFASRSK 319 (319)
T ss_pred HHHHhhC
Confidence 9999986
No 16
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.8e-68 Score=612.20 Aligned_cols=319 Identities=42% Similarity=0.661 Sum_probs=297.4
Q ss_pred ccceeeecccCCCccccccCCceEEEeCCCceeeccCCCCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhcccceEE
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVDGYNVCI 969 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n~~i 969 (1268)
.+|+|+|||||+.+.|...+...++...+..+|..... ...+.|.||+||+++++|++||+.+ .|+|+.+++|+|+||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~v~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i 80 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGS-DDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI 80 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCCCEEEecCC-CCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceE
Confidence 48999999999999887777777777776644443222 3468999999999999999999985 999999999999999
Q ss_pred EeecccCCCcccccccCCC---CCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeC
Q 000820 970 FAYGQTGSGKTFTIYGSEC---NPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD 1046 (1268)
Q Consensus 970 ~ayG~tgsGKT~t~~G~~~---~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~ 1046 (1268)
||||+|||||||||+|+.. ++|||||++++||+.+........|.|++||+|||+|.++|||++.. ..+.++++
T Consensus 81 ~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~---~~l~i~~~ 157 (325)
T cd01369 81 FAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK---DNLQVHED 157 (325)
T ss_pred EEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc---CCceEEEc
Confidence 9999999999999999988 89999999999999998877778899999999999999999998763 35889999
Q ss_pred CCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCCccc
Q 000820 1047 SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERV 1126 (1268)
Q Consensus 1047 ~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLagse~~ 1126 (1268)
+.++++++|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|.+.+........|+|+||||||||+.
T Consensus 158 ~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLAGsE~~ 237 (325)
T cd01369 158 KNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLAGSEKV 237 (325)
T ss_pred CCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999888888889999999999999999
Q ss_pred cCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC-CCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHHH
Q 000820 1127 KKSGSSGNQLKEAQSINKSLSALGDVISALSSGS-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLT 1205 (1268)
Q Consensus 1127 ~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~-~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL~ 1205 (1268)
.+++..|.+++|+..||+||++|++||.+|++++ .|||||+|+||+||+|+|||||+|+||+||||+..+++||++||+
T Consensus 238 ~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~ 317 (325)
T cd01369 238 SKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESETLSTLR 317 (325)
T ss_pred cccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHHHHHHH
Confidence 9999999999999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 000820 1206 YASRVRSI 1213 (1268)
Q Consensus 1206 fa~r~~~i 1213 (1268)
||+|+|+|
T Consensus 318 ~a~r~~~i 325 (325)
T cd01369 318 FGARAKTI 325 (325)
T ss_pred HHHHhhcC
Confidence 99999986
No 17
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3e-68 Score=611.89 Aligned_cols=320 Identities=43% Similarity=0.680 Sum_probs=290.6
Q ss_pred ccceeeecccCCCccccccCCceEEEeC-CCc--eeeccCC--CCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcc
Q 000820 891 GKIRVYCRLRPLNEKEDAEKERYVLTSL-DEF--TVEHPWK--DDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDG 964 (1268)
Q Consensus 891 ~~i~~~~RvRp~~~~e~~~~~~~~~~~~-~~~--~~~~~~~--~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G 964 (1268)
.+|+|+||+||+.+.|...+...++... +.. .+..+.. ....+.|.||+||+++++|++||+. +.|+|+++++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 3799999999999988877766665553 333 3333321 2347899999999999999999998 59999999999
Q ss_pred cceEEEeecccCCCcccccccCCC---CCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccce
Q 000820 965 YNVCIFAYGQTGSGKTFTIYGSEC---NPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKL 1041 (1268)
Q Consensus 965 ~n~~i~ayG~tgsGKT~t~~G~~~---~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~ 1041 (1268)
+|+||||||+|||||||||+|+.. ++|||||++++||..+..... ..|.|++||+|||+|.|+|||.+... ..+
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~~--~~l 157 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQK--KKL 157 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCCC--Cce
Confidence 999999999999999999999887 899999999999999987654 58999999999999999999987642 368
Q ss_pred EEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC---CCceeEEEEEEE
Q 000820 1042 EIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ---TQSVARGKLSFV 1118 (1268)
Q Consensus 1042 ~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~---~~~~~~s~l~~v 1118 (1268)
.+++++.++++|.|++++.|.|++|+..+|..|.++|++++|.+|..|||||+||+|+|++.+.. ......|+|+||
T Consensus 158 ~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~V 237 (333)
T cd01371 158 ELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGKLNLV 237 (333)
T ss_pred eEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEEEEEE
Confidence 89999999999999999999999999999999999999999999999999999999999987653 455678999999
Q ss_pred ecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCC-CCCCCCCcccccccccCCCCccceEEEEeCCCCCCH
Q 000820 1119 DLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQ-HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNL 1197 (1268)
Q Consensus 1119 DLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~-~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~ 1197 (1268)
|||||||..+++..|.+++|+..||+||.+|++||.+|+.+.. |||||+||||+||+|+|||||+|+||+||+|...++
T Consensus 238 DLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~~~~~ 317 (333)
T cd01371 238 DLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPADYNY 317 (333)
T ss_pred ECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCccccH
Confidence 9999999999999999999999999999999999999999876 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccc
Q 000820 1198 EESYNSLTYASRVRSI 1213 (1268)
Q Consensus 1198 ~et~~tL~fa~r~~~i 1213 (1268)
+||++||+||+|+|+|
T Consensus 318 ~eTl~TL~fa~r~r~I 333 (333)
T cd01371 318 DETLSTLRYANRAKNI 333 (333)
T ss_pred HHHHHHHHHHHHhhcC
Confidence 9999999999999987
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1.4e-67 Score=608.26 Aligned_cols=326 Identities=56% Similarity=0.829 Sum_probs=299.4
Q ss_pred cccceeeecccCCCccccccCCceEEEeCCC--ceeeccCCCCCceeeEeccccCCCCChhhHHhcHHHHHHHHhcccce
Q 000820 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLDE--FTVEHPWKDDKVKQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNV 967 (1268)
Q Consensus 890 k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~ 967 (1268)
+|+|+|+||+||+.+.|.. ....++..++. .++.........+.|.||+||+++++|++||+.+.|+|+++++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 5899999999999888763 33344444443 44433222256789999999999999999999999999999999999
Q ss_pred EEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCC-ceEEEEEEEeeeecccccccCCCCCcccccceEEEeC
Q 000820 968 CIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD 1046 (1268)
Q Consensus 968 ~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~ 1046 (1268)
||||||+|||||||||+|+..++||+||++++||+.+..... ...|.|++||+|||+|+++|||.+.......+.|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 999999999999999999999999999999999999987654 6789999999999999999999987545668999999
Q ss_pred CCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCCccc
Q 000820 1047 SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERV 1126 (1268)
Q Consensus 1047 ~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLagse~~ 1126 (1268)
+.+++++.|++++.|.|++|+..++..|..+|.+++|.+|..|||||+||+|+|.+.+........|+|+||||||+|+.
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGsE~~ 239 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGSERL 239 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999888777888999999999999999
Q ss_pred cCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHHHH
Q 000820 1127 KKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTY 1206 (1268)
Q Consensus 1127 ~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL~f 1206 (1268)
.+.+..+.+++|+..||+||.+|++||.+|+.+..|||||+|+||+||+|+|||+++|+||+||||...+++||++||+|
T Consensus 240 ~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~ 319 (329)
T cd01366 240 KKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCSLRF 319 (329)
T ss_pred ccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccccC
Q 000820 1207 ASRVRSIVND 1216 (1268)
Q Consensus 1207 a~r~~~i~~~ 1216 (1268)
|+|+++|++.
T Consensus 320 a~~~~~i~~~ 329 (329)
T cd01366 320 ASRVRSVELG 329 (329)
T ss_pred HHHhhcccCC
Confidence 9999999873
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=1.3e-67 Score=611.41 Aligned_cols=319 Identities=44% Similarity=0.678 Sum_probs=291.8
Q ss_pred cceeeecccCCCccccccCCceEEEeC-CCceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccceEE
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSL-DEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCI 969 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i 969 (1268)
+|+|+||+||+.+.|...+...++... ++..+... ..+.|.||+||+++++|++||+. +.|+|+++++|+|+||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i 77 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVG----TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATV 77 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEec----CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccce
Confidence 689999999999988877766665543 33333221 15789999999999999999998 5899999999999999
Q ss_pred EeecccCCCcccccccCC------CCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEE
Q 000820 970 FAYGQTGSGKTFTIYGSE------CNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEI 1043 (1268)
Q Consensus 970 ~ayG~tgsGKT~t~~G~~------~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i 1043 (1268)
||||+|||||||||+|+. .++|||||++++||+.+........|.|.+||+|||||.|+|||.+.......+.+
T Consensus 78 ~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i 157 (341)
T cd01372 78 LAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQI 157 (341)
T ss_pred eeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceE
Confidence 999999999999999974 57999999999999999987766799999999999999999999887644567999
Q ss_pred EeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC----------CCceeEE
Q 000820 1044 KKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ----------TQSVARG 1113 (1268)
Q Consensus 1044 ~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~----------~~~~~~s 1113 (1268)
++++.++++|.|++++.|.|++|++.+|..|..+|..++|.+|..|||||+||+|+|.+.+.. ......|
T Consensus 158 ~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s 237 (341)
T cd01372 158 REDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTS 237 (341)
T ss_pred EECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCceeeE
Confidence 999999999999999999999999999999999999999999999999999999999987763 3456789
Q ss_pred EEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC---CCCCCCCCcccccccccCCCCccceEEEEe
Q 000820 1114 KLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS---QHIPYRNHKLTMLMSDSLGGNAKTLMFVNV 1190 (1268)
Q Consensus 1114 ~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~---~~vpyr~skLT~lL~~~lgg~~~t~~i~~v 1190 (1268)
+|+||||||||+..+++..|.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+||||++|+||+||
T Consensus 238 ~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~I~~v 317 (341)
T cd01372 238 KFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLMIACV 317 (341)
T ss_pred EEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEe
Confidence 99999999999999999999999999999999999999999999887 699999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhcccc
Q 000820 1191 SPAESNLEESYNSLTYASRVRSIV 1214 (1268)
Q Consensus 1191 sp~~~~~~et~~tL~fa~r~~~i~ 1214 (1268)
||...+++||++||+||+|+|+|+
T Consensus 318 sp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 318 SPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred CCChhhHHHHHHHHHHHHHhccCC
Confidence 999999999999999999999986
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=1.5e-67 Score=604.29 Aligned_cols=315 Identities=41% Similarity=0.653 Sum_probs=287.8
Q ss_pred cceeeecccCCCccccccCCceEEEeCCCceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccceEEE
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCIF 970 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ 970 (1268)
+|+|+||+||+...|.. +..+++...++.++.... ....+.|.||+||+++++|++||+. +.|+|+++++|+|+|||
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~~~~v~~~~-~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ 78 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDNDNTISLEE-STPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIF 78 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECCCCEEEEcC-CCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEE
Confidence 58999999999988763 345555555543333221 1446899999999999999999998 59999999999999999
Q ss_pred eecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeCCCCc
Q 000820 971 AYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGM 1050 (1268)
Q Consensus 971 ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~~~~~ 1050 (1268)
|||+|||||||||+|+..++|||||++++||..+.... ...|.|++||+|||||.|+|||.|.+ ..+.+++++.++
T Consensus 79 ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~---~~l~i~~~~~~~ 154 (321)
T cd01374 79 AYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP---QELRIREDPNKG 154 (321)
T ss_pred eecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC---CCceEEECCCCC
Confidence 99999999999999999999999999999999997755 45899999999999999999998875 368899999999
Q ss_pred EEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCC---CceeEEEEEEEecCCCcccc
Q 000820 1051 VLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQT---QSVARGKLSFVDLAGSERVK 1127 (1268)
Q Consensus 1051 ~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~---~~~~~s~l~~vDLagse~~~ 1127 (1268)
+++.|++++.|.|++|+..+|..|.++|+.++|.+|..|||||+||+|+|.+.+... .....|+|+||||||||+..
T Consensus 155 ~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~ 234 (321)
T cd01374 155 VVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERAS 234 (321)
T ss_pred EEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccc
Confidence 999999999999999999999999999999999999999999999999999887655 66788999999999999999
Q ss_pred CCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC--CCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHHH
Q 000820 1128 KSGSSGNQLKEAQSINKSLSALGDVISALSSGS--QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLT 1205 (1268)
Q Consensus 1128 ~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~--~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL~ 1205 (1268)
+.+ .+.+++|+..||+||.+|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+||||...+++||++||+
T Consensus 235 ~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~ 313 (321)
T cd01374 235 QTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETLNTLK 313 (321)
T ss_pred cCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHHHHHH
Confidence 998 89999999999999999999999999986 899999999999999999999999999999999999999999999
Q ss_pred HHHHhccc
Q 000820 1206 YASRVRSI 1213 (1268)
Q Consensus 1206 fa~r~~~i 1213 (1268)
||+|+++|
T Consensus 314 ~a~r~~~i 321 (321)
T cd01374 314 FASRAKKV 321 (321)
T ss_pred HHHHHhcC
Confidence 99999986
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.1e-67 Score=601.17 Aligned_cols=314 Identities=41% Similarity=0.613 Sum_probs=279.2
Q ss_pred cceeeecccCCCccccccCCceEEEeCCC--ceeeccC--------CCCCceeeEeccccCCCCChhhHHhcH-HHHHHH
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDE--FTVEHPW--------KDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQS 960 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~ 960 (1268)
+|+|+||+||+...+.. .+...++. +++..|. .....+.|.||+||++ ++|++||+.+ .|+|++
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 58999999999864321 22233332 2222211 1223678999999999 9999999985 899999
Q ss_pred HhcccceEEEeecccCCCcccccccCC---CCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcc-
Q 000820 961 AVDGYNVCIFAYGQTGSGKTFTIYGSE---CNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNE- 1036 (1268)
Q Consensus 961 ~~~G~n~~i~ayG~tgsGKT~t~~G~~---~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~- 1036 (1268)
+++|+|+||||||+|||||||||+|+. .++|||||++++||+.++... ...|.|++||+|||||.|+|||.+...
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~ 154 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEA 154 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCccc
Confidence 999999999999999999999999986 478999999999999998754 457999999999999999999988742
Q ss_pred --cccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEe--ecCCCceeE
Q 000820 1037 --KRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIEST--NLQTQSVAR 1112 (1268)
Q Consensus 1037 --~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~--~~~~~~~~~ 1112 (1268)
....+.|++++.++++|.|++++.|.+++|++.+|..|..+|.+++|.+|..|||||+||+|+|.+. .........
T Consensus 155 ~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~ 234 (334)
T cd01375 155 LESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRL 234 (334)
T ss_pred cccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEE
Confidence 2457899999999999999999999999999999999999999999999999999999999999987 444556778
Q ss_pred EEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC-CCCCCCCCcccccccccCCCCccceEEEEeC
Q 000820 1113 GKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS-QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVS 1191 (1268)
Q Consensus 1113 s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~-~~vpyr~skLT~lL~~~lgg~~~t~~i~~vs 1191 (1268)
|+|+||||||||+..+++..+..++|+..||+||++|++||.+|+.++ .|||||+||||+||+|+|||||+|+||+|||
T Consensus 235 s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vs 314 (334)
T cd01375 235 SKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIW 314 (334)
T ss_pred EEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeC
Confidence 999999999999999999999999999999999999999999999998 8999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhc
Q 000820 1192 PAESNLEESYNSLTYASRVR 1211 (1268)
Q Consensus 1192 p~~~~~~et~~tL~fa~r~~ 1211 (1268)
|...+++||++||+||+|++
T Consensus 315 p~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 315 VEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred CchhhHHHHHHHHHHHHhcC
Confidence 99999999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=6.5e-65 Score=588.70 Aligned_cols=326 Identities=49% Similarity=0.770 Sum_probs=302.0
Q ss_pred cceeeecccCCCccccccCCceEEEeCCC----ceeeccCCCCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhcccc
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLDE----FTVEHPWKDDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVDGYN 966 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n 966 (1268)
+|+|+|||||+...|...+...++...+. +++.++......+.|.||+||+++++|++||+.+ .|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 58999999999988877777777766543 4444555556689999999999999999999985 899999999999
Q ss_pred eEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeC
Q 000820 967 VCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD 1046 (1268)
Q Consensus 967 ~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~ 1046 (1268)
+|||+||+|||||||||+|+..++||+||++++||+.+........|.|++||+|||+|.|+|||.+. +..+.++++
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~---~~~l~i~~~ 157 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS---PKKLEIRED 157 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC---CCCcEEEEC
Confidence 99999999999999999999999999999999999999877666789999999999999999999876 346899999
Q ss_pred CCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEe--ecCCCceeEEEEEEEecCCCc
Q 000820 1047 SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIEST--NLQTQSVARGKLSFVDLAGSE 1124 (1268)
Q Consensus 1047 ~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~--~~~~~~~~~s~l~~vDLagse 1124 (1268)
+++++++.|++++.|.|++|+..+|..|..+|.+++|.+|..|||||+||+|+|++. +........|+|+||||||+|
T Consensus 158 ~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse 237 (335)
T smart00129 158 KKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSE 237 (335)
T ss_pred CCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCC
Confidence 999999999999999999999999999999999999999999999999999999976 556677889999999999999
Q ss_pred cccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhC--CCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHH
Q 000820 1125 RVKKSGSSGNQLKEAQSINKSLSALGDVISALSS--GSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYN 1202 (1268)
Q Consensus 1125 ~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~--~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~ 1202 (1268)
+..+.+..+.+++|+..||+||.+|++||.+|+. +..|+|||+|+||+||+++|||+++|+||+||||...+++||++
T Consensus 238 ~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~eTl~ 317 (335)
T smart00129 238 RASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEETLS 317 (335)
T ss_pred ccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHHHHH
Confidence 9999999999999999999999999999999998 46699999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccccCCCCC
Q 000820 1203 SLTYASRVRSIVNDPNKN 1220 (1268)
Q Consensus 1203 tL~fa~r~~~i~~~~~~~ 1220 (1268)
||+||+++++|+|.|++|
T Consensus 318 tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 318 TLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHhhcccCCCcC
Confidence 999999999999999875
No 23
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1.8e-64 Score=559.95 Aligned_cols=322 Identities=35% Similarity=0.518 Sum_probs=286.7
Q ss_pred cccceeeecccCCCccccccCCceEEEeCC-CceeeccCCCC-------CceeeEeccccCCCCChhhHHhc-HHHHHHH
Q 000820 890 KGKIRVYCRLRPLNEKEDAEKERYVLTSLD-EFTVEHPWKDD-------KVKQHMYDQVFDGYATQEDVFED-TRYLVQS 960 (1268)
Q Consensus 890 k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~ 960 (1268)
..+|.|+||-||++.+|...++..||+++. ...+.|-++-. ....|.||++||+.++++.||.. ++|+|..
T Consensus 207 ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 207 EHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred cceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 358999999999999999999999999864 44444432211 14689999999999999999997 5999999
Q ss_pred HhcccceEEEeecccCCCcccccccCC------CCCCCcHHHHHHHHHHHHh-cCCceEEEEEEEeeeecccccccCCCC
Q 000820 961 AVDGYNVCIFAYGQTGSGKTFTIYGSE------CNPGITPRAISELFRILKK-ENNKFSFSLKAYMVELYQDTLVDLLLP 1033 (1268)
Q Consensus 961 ~~~G~n~~i~ayG~tgsGKT~t~~G~~------~~~Gli~r~~~~lf~~~~~-~~~~~~~~v~~s~~eiy~e~v~DLL~~ 1033 (1268)
+|+|--+|+||||||||||||||-|+- ...||..++.+|+|..+.. .-....+.|.++|+|||..+|||||.+
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 999999999999999999999999863 3469999999999999876 233567999999999999999999965
Q ss_pred CcccccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEE
Q 000820 1034 RNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARG 1113 (1268)
Q Consensus 1034 ~~~~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s 1113 (1268)
+.++.+.+|.+..|+|.|+++..|.+.+|++.+|+.|+..|+++.|..|.+|||||+||+|.+.... ....+|
T Consensus 367 ----k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~---~~k~hG 439 (676)
T KOG0246|consen 367 ----KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHG---EFKLHG 439 (676)
T ss_pred ----ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCC---cceeEe
Confidence 4579999999999999999999999999999999999999999999999999999999999987532 356789
Q ss_pred EEEEEecCCCccccCCC-CchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCC-CccceEEEEeC
Q 000820 1114 KLSFVDLAGSERVKKSG-SSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGG-NAKTLMFVNVS 1191 (1268)
Q Consensus 1114 ~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg-~~~t~~i~~vs 1191 (1268)
+++||||||+||...+. ++.+...||+.||+||+||..||.||..++.|+|||.||||.+|+|||=| |++||||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 99999999999977664 44556779999999999999999999999999999999999999999966 99999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhcccccCCC
Q 000820 1192 PAESNLEESYNSLTYASRVRSIVNDPN 1218 (1268)
Q Consensus 1192 p~~~~~~et~~tL~fa~r~~~i~~~~~ 1218 (1268)
|...+.+.||+|||||+|+|....++.
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~~~ 546 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVDGG 546 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCCCC
Confidence 999999999999999999998765554
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=7.2e-64 Score=581.08 Aligned_cols=316 Identities=46% Similarity=0.756 Sum_probs=282.9
Q ss_pred cccCCCccccccCCceEEEeCCC-----ceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccceEEEe
Q 000820 898 RLRPLNEKEDAEKERYVLTSLDE-----FTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCIFA 971 (1268)
Q Consensus 898 RvRp~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~a 971 (1268)
||||+++.|...+...++...+. ............+.|.||+||+++++|++||+. +.|+|+++++|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999988777666554321 111222334457899999999999999999998 599999999999999999
Q ss_pred ecccCCCcccccccC--CCCCCCcHHHHHHHHHHHHhcCCc--eEEEEEEEeeeecccccccCCCCCcc-cccceEEEeC
Q 000820 972 YGQTGSGKTFTIYGS--ECNPGITPRAISELFRILKKENNK--FSFSLKAYMVELYQDTLVDLLLPRNE-KRLKLEIKKD 1046 (1268)
Q Consensus 972 yG~tgsGKT~t~~G~--~~~~Gli~r~~~~lf~~~~~~~~~--~~~~v~~s~~eiy~e~v~DLL~~~~~-~~~~~~i~~~ 1046 (1268)
||+|||||||||+|+ ..++|||||++++||..+...... ..|.|++||+|||+|.|+|||.+... ....+.++++
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 889999999999999999886654 78999999999999999999998742 2347899999
Q ss_pred CCCc-EEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCc----eeEEEEEEEecC
Q 000820 1047 SKGM-VLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS----VARGKLSFVDLA 1121 (1268)
Q Consensus 1047 ~~~~-~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~----~~~s~l~~vDLa 1121 (1268)
+..+ +++.|++++.|.|+++++.+|..|.++|+++.|.+|..|||||+||+|+|.+.+..... ...|+|+|||||
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLa 240 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLA 240 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEE
T ss_pred cccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeeecc
Confidence 9855 99999999999999999999999999999999999999999999999999998876543 588999999999
Q ss_pred CCccccCCCC-chhhHHHHHHHhHHHHHHHHHHHHhhCC--CCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHH
Q 000820 1122 GSERVKKSGS-SGNQLKEAQSINKSLSALGDVISALSSG--SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLE 1198 (1268)
Q Consensus 1122 gse~~~~~~~-~~~~~~e~~~in~sl~~L~~vi~al~~~--~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~ 1198 (1268)
|+|+..+.+. .+.+++|+..||+||.+|++||.+|+.+ ..|||||+||||+||+|+|||||+|+||+||||...+++
T Consensus 241 GsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~~~ 320 (335)
T PF00225_consen 241 GSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSEDYE 320 (335)
T ss_dssp ESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGGHH
T ss_pred cccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCccccHH
Confidence 9999998886 4888999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 000820 1199 ESYNSLTYASRVRSI 1213 (1268)
Q Consensus 1199 et~~tL~fa~r~~~i 1213 (1268)
||++||+||+++|+|
T Consensus 321 eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 321 ETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHcCC
Confidence 999999999999987
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=3.4e-64 Score=574.50 Aligned_cols=331 Identities=33% Similarity=0.528 Sum_probs=289.7
Q ss_pred ccccccceeeecccCCCccccccCCceEEEeCCCceee-c-c---------CCCCCceeeEeccccCCCCChhhHHhcH-
Q 000820 887 EDMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVE-H-P---------WKDDKVKQHMYDQVFDGYATQEDVFEDT- 954 (1268)
Q Consensus 887 ~~~k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~-~-~---------~~~~~~~~f~fd~vf~~~~~q~~v~~~~- 954 (1268)
.+++..+.|+||+||+.+.. ++..++.+.++.++. . | .++...+.|.|.+||+++++|.+||+.+
T Consensus 27 ~~~~d~v~v~~rvrP~~~~~---~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~ 103 (809)
T KOG0247|consen 27 CESKDPVLVVCRVRPLSDAS---EDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTV 103 (809)
T ss_pred hhhhcchheeEeecCCCCCc---cccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHh
Confidence 46778999999999998622 233344444333322 1 1 2233478999999999999999999985
Q ss_pred HHHHHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhc---------------------------
Q 000820 955 RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKE--------------------------- 1007 (1268)
Q Consensus 955 ~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~--------------------------- 1007 (1268)
.|+|.+++.|.|+.+|+||.|||||||||+|++.++||+||+++.||+.|...
T Consensus 104 ~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~l 183 (809)
T KOG0247|consen 104 APLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQL 183 (809)
T ss_pred HHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999988310
Q ss_pred -------------------------------------CCceEEEEEEEeeeecccccccCCCCCcc--cccc-eEEEeCC
Q 000820 1008 -------------------------------------NNKFSFSLKAYMVELYQDTLVDLLLPRNE--KRLK-LEIKKDS 1047 (1268)
Q Consensus 1008 -------------------------------------~~~~~~~v~~s~~eiy~e~v~DLL~~~~~--~~~~-~~i~~~~ 1047 (1268)
..++.|+|+|||+||||+.|||||.+.+. .... ..+++|.
T Consensus 184 kr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~ 263 (809)
T KOG0247|consen 184 KREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDT 263 (809)
T ss_pred hhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhcc
Confidence 12357899999999999999999987632 2223 5678999
Q ss_pred CCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC--CCceeEEEEEEEecCCCcc
Q 000820 1048 KGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ--TQSVARGKLSFVDLAGSER 1125 (1268)
Q Consensus 1048 ~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~--~~~~~~s~l~~vDLagse~ 1125 (1268)
+|..+|.|+++|.|.|.+||+.+|+.|.++|+.++|..|..|||||+||+|.+-+.... ......|.|.|||||||||
T Consensus 264 ~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSER 343 (809)
T KOG0247|consen 264 NGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSER 343 (809)
T ss_pred CCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccchh
Confidence 99999999999999999999999999999999999999999999999999999877655 5667889999999999999
Q ss_pred ccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCC-----CCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHH
Q 000820 1126 VKKSGSSGNQLKEAQSINKSLSALGDVISALSSG-----SQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEES 1200 (1268)
Q Consensus 1126 ~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~-----~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et 1200 (1268)
..+++++|.|++||.+||+||.+||+||.+|+.+ +.+|||||||||++++.+|.|..+++||+||+|.+.+|+|+
T Consensus 344 t~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdEn 423 (809)
T KOG0247|consen 344 TNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDEN 423 (809)
T ss_pred cccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHHH
Confidence 9999999999999999999999999999999865 35999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccCCCCC
Q 000820 1201 YNSLTYASRVRSIVNDPNKN 1220 (1268)
Q Consensus 1201 ~~tL~fa~r~~~i~~~~~~~ 1220 (1268)
++.|+||..+..|...+.++
T Consensus 424 l~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 424 LNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHHhcccccccCccc
Confidence 99999999999998777654
No 26
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.1e-62 Score=569.44 Aligned_cols=318 Identities=48% Similarity=0.771 Sum_probs=288.1
Q ss_pred cceeeecccCCCccccccCCceEEEeCC--CceeeccCC--CCCceeeEeccccCCCCChhhHHhcH-HHHHHHHhcccc
Q 000820 892 KIRVYCRLRPLNEKEDAEKERYVLTSLD--EFTVEHPWK--DDKVKQHMYDQVFDGYATQEDVFEDT-RYLVQSAVDGYN 966 (1268)
Q Consensus 892 ~i~~~~RvRp~~~~e~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~f~fd~vf~~~~~q~~v~~~~-~~~v~~~~~G~n 966 (1268)
+|+|+||+||+...|.. +...++...+ .+.+..+.. ....+.|.||+||+++++|++||+.+ .|+|+++++|+|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~ 79 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYN 79 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCc
Confidence 58999999999877633 3344555555 333333221 23478999999999999999999985 899999999999
Q ss_pred eEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCC-ceEEEEEEEeeeecccccccCCCCCcccccceEEEe
Q 000820 967 VCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKK 1045 (1268)
Q Consensus 967 ~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~ 1045 (1268)
+||||||+|||||||||+|+..++|||||++++||..+..... ...+.|++||+|||+|.|+|||.+.. ....+.+++
T Consensus 80 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~-~~~~l~i~~ 158 (328)
T cd00106 80 GTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP-PSKPLSLRE 158 (328)
T ss_pred eeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC-CCCCcEEEE
Confidence 9999999999999999999999999999999999999987653 45899999999999999999998863 245789999
Q ss_pred CCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCc--eeEEEEEEEecCCC
Q 000820 1046 DSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQS--VARGKLSFVDLAGS 1123 (1268)
Q Consensus 1046 ~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~--~~~s~l~~vDLags 1123 (1268)
++.+++++.|++++.|.|++|++.++..|.++|.+++|.+|..|||||+||+|+|.+.+..... ...|+|+||||||+
T Consensus 159 ~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGs 238 (328)
T cd00106 159 DPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGS 238 (328)
T ss_pred cCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999999999998877655 78899999999999
Q ss_pred ccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCC--CCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHH
Q 000820 1124 ERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGS--QHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESY 1201 (1268)
Q Consensus 1124 e~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~--~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~ 1201 (1268)
|+..+.+..+.+++|+..||+||.+|++||.+|+.+. .|||||+||||+||+|+|||+++|+||+||+|...+++||+
T Consensus 239 e~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~~~eTl 318 (328)
T cd00106 239 ERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSENYDETL 318 (328)
T ss_pred CcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhhHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc
Q 000820 1202 NSLTYASRVR 1211 (1268)
Q Consensus 1202 ~tL~fa~r~~ 1211 (1268)
+||+||+|+|
T Consensus 319 ~tL~~a~r~~ 328 (328)
T cd00106 319 STLRFASRAK 328 (328)
T ss_pred HHHHHHHhcC
Confidence 9999999986
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=1e-62 Score=581.16 Aligned_cols=353 Identities=38% Similarity=0.591 Sum_probs=308.2
Q ss_pred ccCCCccccccCCceEEEe-CCCceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccceEEEeecccC
Q 000820 899 LRPLNEKEDAEKERYVLTS-LDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYNVCIFAYGQTG 976 (1268)
Q Consensus 899 vRp~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n~~i~ayG~tg 976 (1268)
|||+...|...+...|+.+ +.+..|.. +...+|+||+||+...+|.++|+. |.|+++.++.|||+|++||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~i----g~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtg 76 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAI----GKDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTG 76 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceee----cCCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccC
Confidence 6999999988888877774 33333322 245789999999999999999997 69999999999999999999999
Q ss_pred CCcccccccC----CCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeCCCCcEE
Q 000820 977 SGKTFTIYGS----ECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVL 1052 (1268)
Q Consensus 977 sGKT~t~~G~----~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~~~~~~~ 1052 (1268)
|||||||.+. ..+.|+|||++.++|..+..... ..|.|.|+|+|||++.|+|||.|... ...+.+++ ++|.+.
T Consensus 77 sgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~~-~~~i~~~e-~~g~it 153 (913)
T KOG0244|consen 77 SGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSRL-KANIKLRE-PKGEIT 153 (913)
T ss_pred CCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhhh-hhceeccc-cCCceE
Confidence 9999999887 23459999999999999987654 68999999999999999999986543 33477777 789999
Q ss_pred ecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEe-ecCCCceeEEEEEEEecCCCccccCCCC
Q 000820 1053 VENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIEST-NLQTQSVARGKLSFVDLAGSERVKKSGS 1131 (1268)
Q Consensus 1053 v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~-~~~~~~~~~s~l~~vDLagse~~~~~~~ 1131 (1268)
+.|++++.|.+..++...|..|.-.|++++|.||..|||||+||++.+++. ........+++|+|||||||||.+++++
T Consensus 154 ~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~kkT~a 233 (913)
T KOG0244|consen 154 IRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVKKTKA 233 (913)
T ss_pred EEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccccccc
Confidence 999999999999999999999999999999999999999999999999874 3345556779999999999999999999
Q ss_pred chhhHHHHHHHhHHHHHHHHHHHHhhCCCC--CCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHHHHHHH
Q 000820 1132 SGNQLKEAQSINKSLSALGDVISALSSGSQ--HIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSLTYASR 1209 (1268)
Q Consensus 1132 ~~~~~~e~~~in~sl~~L~~vi~al~~~~~--~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL~fa~r 1209 (1268)
+|+|++||++||.+|++||+||+||..... |||||+|||||||+|+||||+.|+||+||||++.+.+||++||+||.|
T Consensus 234 ~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ya~R 313 (913)
T KOG0244|consen 234 EGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLRYADR 313 (913)
T ss_pred chhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHHHhhH
Confidence 999999999999999999999999988766 999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCCCCCCh--HHHHHHHHHHHHHH-HHcCCCCC--hhHHHHHHHHHhh
Q 000820 1210 VRSIVNDPNKNVSS--KEVARLKRLVAYWK-EQAGKKGD--YEELEEIQEERLQ 1258 (1268)
Q Consensus 1210 ~~~i~~~~~~~~~~--~~~~~l~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~ 1258 (1268)
|++|+|+|.+|.++ .++..||.+++.++ +.++..++ ..+++.+..+..+
T Consensus 314 ak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~ 367 (913)
T KOG0244|consen 314 AKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVT 367 (913)
T ss_pred HHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhh
Confidence 99999999999976 48899999998875 44443332 2345555544433
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-56 Score=538.99 Aligned_cols=341 Identities=41% Similarity=0.604 Sum_probs=297.8
Q ss_pred cccccceeeecccCCCccccccCCceEEEeCCCceeeccCCCCCceeeEeccccCCCCChhhHHhc-HHHHHHHHhcccc
Q 000820 888 DMKGKIRVYCRLRPLNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVFED-TRYLVQSAVDGYN 966 (1268)
Q Consensus 888 ~~k~~i~~~~RvRp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~-~~~~v~~~~~G~n 966 (1268)
..-..++++++..|-...+ .+....+...+.. ......+|.||+||++.++|++||+. ++|++++++.|||
T Consensus 19 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N 90 (568)
T COG5059 19 KSVSDIKSTIRIIPGELGE------RLINTSKKSHVSL--EKSKEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYN 90 (568)
T ss_pred eeecCceEEEeecCCCcch------heeeccccccccc--ccccceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhccc
Confidence 3345677777777743222 1222222222211 11126789999999999999999987 6999999999999
Q ss_pred eEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeC
Q 000820 967 VCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKD 1046 (1268)
Q Consensus 967 ~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~ 1046 (1268)
+||||||||||||||||.|....+||||+++.+||+.+........|.|.+||+|||||+++|||.+.... +.++++
T Consensus 91 ~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~---~~~~~~ 167 (568)
T COG5059 91 CTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEES---LNIRED 167 (568)
T ss_pred ceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCcccc---cccccc
Confidence 99999999999999999999999999999999999999887755679999999999999999999887643 678899
Q ss_pred CCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCCCceeEEEEEEEecCCCccc
Q 000820 1047 SKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQTQSVARGKLSFVDLAGSERV 1126 (1268)
Q Consensus 1047 ~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~~~~~~s~l~~vDLagse~~ 1126 (1268)
..+++++.|+++..|.+.+|++.+|..|..+|+++.|.+|..|||||+||++.+.+.+........++|+||||||||+.
T Consensus 168 ~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~ 247 (568)
T COG5059 168 SLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERA 247 (568)
T ss_pred CCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceEEEEEEEEEeccCccceecceEEEEeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999887766666689999999999999
Q ss_pred cCCCCchhhHHHHHHHhHHHHHHHHHHHHhhC--CCCCCCCCCCcccccccccCCCCccceEEEEeCCCCCCHHHHHHHH
Q 000820 1127 KKSGSSGNQLKEAQSINKSLSALGDVISALSS--GSQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLEESYNSL 1204 (1268)
Q Consensus 1127 ~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~--~~~~vpyr~skLT~lL~~~lgg~~~t~~i~~vsp~~~~~~et~~tL 1204 (1268)
..++..+.+++|+..||+||.+||+||.+|.. +..|||||+|||||+|+++|||+|+|+|||||+|...++++|.+||
T Consensus 248 ~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL 327 (568)
T COG5059 248 ARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTL 327 (568)
T ss_pred chhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHH
Confidence 99999999999999999999999999999997 7889999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccccCCCCCC---ChHHHHHHHHHHHHHHHH
Q 000820 1205 TYASRVRSIVNDPNKNV---SSKEVARLKRLVAYWKEQ 1239 (1268)
Q Consensus 1205 ~fa~r~~~i~~~~~~~~---~~~~~~~l~~~~~~~~~~ 1239 (1268)
+||+|++.|++.+..|. .+.++..++..+...++.
T Consensus 328 ~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 365 (568)
T COG5059 328 KFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSE 365 (568)
T ss_pred HHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhh
Confidence 99999999999999995 345555555555444333
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=5.8e-46 Score=391.00 Aligned_cols=176 Identities=52% Similarity=0.848 Sum_probs=169.3
Q ss_pred HHhcHHHHHHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEeeeeccccccc
Q 000820 950 VFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVD 1029 (1268)
Q Consensus 950 v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~D 1029 (1268)
||+.+.|+|+.+++|+|+||||||+|||||||||+|++.++||+||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99987799999999999999999999999999999999999999999998
Q ss_pred CCCCCcccccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecCC--
Q 000820 1030 LLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQT-- 1107 (1268)
Q Consensus 1030 LL~~~~~~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~~-- 1107 (1268)
++.++..|..+|..+.|.+|..|||||+||+|++.+.+...
T Consensus 58 -------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~~ 100 (186)
T cd01363 58 -------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASA 100 (186)
T ss_pred -------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCCC
Confidence 88999999999999999999999999999999999877654
Q ss_pred -CceeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhhCCCCCCCCCCCcccccccccCCCCccceE
Q 000820 1108 -QSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALSSGSQHIPYRNHKLTMLMSDSLGGNAKTLM 1186 (1268)
Q Consensus 1108 -~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~~~~~~vpyr~skLT~lL~~~lgg~~~t~~ 1186 (1268)
.....|+|+||||||||+..+++..+.+++|+..||+||.+|++||.+|++++.|||||+||||+||+|+|||||+|+|
T Consensus 101 ~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~t~~ 180 (186)
T cd01363 101 TEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSRTLM 180 (186)
T ss_pred ccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCeEEE
Confidence 5677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCC
Q 000820 1187 FVNVSP 1192 (1268)
Q Consensus 1187 i~~vsp 1192 (1268)
|+||||
T Consensus 181 i~~vsP 186 (186)
T cd01363 181 VACISP 186 (186)
T ss_pred EEEeCc
Confidence 999998
No 30
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=100.00 E-value=2.1e-41 Score=380.12 Aligned_cols=402 Identities=15% Similarity=0.193 Sum_probs=328.0
Q ss_pred cccceeccCCCCccccCCCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHHHHhhccccCchhHHHHHHh
Q 000820 114 EDMLCFQKDPIPTSLLKLNSDLVSRATKLFQIILKYMGVESSDRVTPPSLDERIDFVGKLYKHTLKRVELRDELFAQISK 193 (1268)
Q Consensus 114 ~~~l~~~k~pi~~~Ll~~~~~~~~~A~~~F~~il~~mg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~LrDEiy~Ql~K 193 (1268)
..|++|.++-|...++..+ ..+...|..-..|.-+. .....+|. -.++.|--|+||||++
T Consensus 489 ~~m~~~~ed~l~~~~t~~s----~~~~~llf~s~~~~p~~------~a~~~~hs----------~~~~~l~~~~~cql~~ 548 (936)
T KOG0248|consen 489 NGMIFHNEDRLFKTMISDS----PLWKDLLFASGEEIPKD------TMTSVDHS----------DRKKTLEIARACQLFV 548 (936)
T ss_pred CceeeecCCcccccccCCC----HHHHHHHHhhcccccCC------ccchhhhh----------cCcHHHHHHHHHHHHH
Confidence 3466776666665555444 44445544444554322 22222222 2277888999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHhhcccCCChhhHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHhhhccCCCCCCCCHHH
Q 000820 194 QTRNNPDRQCLIKAWELMYLCASSMPPSKDMGGYLTEYVHNVAQGIIIDSEVQTLALNTLNALKRSVKAGPRHTIPGREE 273 (1268)
Q Consensus 194 Q~t~np~~~s~~r~W~Ll~~~~~~f~PS~~l~~~L~~~l~~~~~~~~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~E 273 (1268)
|+... .+||+|+++|++.|.|...|.+||+.+ ++.++||.||+.++.||.++|.|..-||.+|
T Consensus 549 ~~~~r------~Q~wQllalca~lfLp~h~flwylr~~-----------se~g~yAiyCqraveRtlr~G~RearPSRmE 611 (936)
T KOG0248|consen 549 SVLMR------AQATQYHIDLAQNILSTAVQQEYLRNE-----------SDETRMAIFCESALDRCLRVGGRQEGPSRLE 611 (936)
T ss_pred HHHHH------HHHHHHHHHHHhhhccchHHHHHHHhc-----------ccchhHHHHHHHHHHHHHhccccccCCchhe
Confidence 98765 899999999999999999999999854 5678999999999999999999999999999
Q ss_pred HHHHHcCC------cceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccc
Q 000820 274 IEALLTGR------KLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYI 347 (1268)
Q Consensus 274 i~Ai~~~~------~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~ 347 (1268)
|.+++.++ |+.|.|+|+||++..|.||.+-
T Consensus 612 v~S~LlRnp~hhslPfSIpVhf~Ng~YqvVgFDgsQ-------------------------------------------- 647 (936)
T KOG0248|consen 612 VTSVLTRDVTRTKFPHSISVKLPNSEYQIVEFDGKQ-------------------------------------------- 647 (936)
T ss_pred ehhhhhcCcccccCCcceeeeccCCeeEEEeecchH--------------------------------------------
Confidence 99998876 7889999999999999999870
Q ss_pred cCCCcchHHHHHHHHHHhhhcCCCcee----eEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHH
Q 000820 348 GLDDNKYIGDLLAEFKAAKDRSKGEIL----HCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQ 423 (1268)
Q Consensus 348 ~L~~~~~i~D~l~~~e~~~~~~~~~~~----~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~ 423 (1268)
.|+|++++||+..+....... -..+++++++|+-.-...+++..+.|+|.|.-..|+.|++|.+.+.+..
T Consensus 648 ------eiCDaiSkWEqaske~qpGkeg~~~v~~l~~~~r~y~~~~~~~et~~erlll~~~~s~eIv~gr~p~~~~l~e~ 721 (936)
T KOG0248|consen 648 ------KLCDALSTWETRSRDAQRGRVISDCAAALSLRMRHYWGHLALTETPIERQFLVWRASEEIVNGRIPLSNQLCES 721 (936)
T ss_pred ------HHHHHHHHHHHhhhhhcCCcchhHHHHHHHHHHHHHHHHhhcCCChHHHHHHHhhchHHhhcCcCcchHHHHHH
Confidence 188999999987543322111 1346778888887777788999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeee
Q 000820 424 LSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVF 503 (1268)
Q Consensus 424 LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~ 503 (1268)
+|||..|..+||.+++...+.+.+++++|.|+.+......+.++.+|...|..++|+++.+|...||..+++||+||+.+
T Consensus 722 ~AaL~aq~~~gd~~~~~k~q~l~qv~~rFyP~ryrdga~~eqLR~~l~t~W~~L~G~S~~eCvRIYLTVARKWPFFGAKL 801 (936)
T KOG0248|consen 722 LAALYAQMVFGDANQSLSDQQFEFISQRFYPSKMLDVACIKSLRLQINSNWSELIGMSENECVRIYLTVARKWPFFGAKL 801 (936)
T ss_pred HHHHHHHHhhccccccchHHHHHHHHHHhChhhhhccCCHHHHHHHHhhhHHHHhCCChhHheeeeeeecccCcccchhh
Confidence 99999999999988776666778889999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecCCCCCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCee-------eEEEEEc-
Q 000820 504 FSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVL-------HIFQFET- 575 (1268)
Q Consensus 504 F~v~~~~~~~~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~-------~~~~feT- 575 (1268)
|.++...-. +....=+|||||.+||.++|.++..++.+|||+.+..||...+.|+++|..--.. .++.|.+
T Consensus 802 F~A~P~~~S-S~~~tfiWlAVnEDGvSlLd~N~M~vi~tYpYsSl~TFGG~qDDFMlVI~~tp~K~~~~~~~EKL~F~MA 880 (936)
T KOG0248|consen 802 FEASPMRTS-SERKTFIWLAVNEDGVSLLDRNHMDVIRTYPYSSLSTFGGFQDDFMLVIIRTPGKHPDEAPKEKLTFSMA 880 (936)
T ss_pred hhcCCCccc-cccceeEEEEEcCCcceeccccceeEEEEeeccccccccCcccceEEEEecCCCCCCCccchhhhhhhhc
Confidence 999766532 3345569999999999999999999999999999999999999999888754331 3566655
Q ss_pred -CcHHHHHHHHHHHHHHHHHHHhhhccccc
Q 000820 576 -KQGEEICVALQTHINDVMLRRYSKARSAA 604 (1268)
Q Consensus 576 -~q~~eI~~li~~yi~~~~~~r~~~~~~~~ 604 (1268)
+.-.||.-+|++||| +-.+...+-.++|
T Consensus 881 kPKI~E~Tl~~ASYiN-Hcqk~v~~~~~aP 909 (936)
T KOG0248|consen 881 KPKIEELTLHLASYIN-HCQKLVWKVSKAP 909 (936)
T ss_pred cchHHHHHHHHHHHHH-HHHhhhcCCCCch
Confidence 678899999999999 4444334444444
No 31
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=100.00 E-value=3.2e-38 Score=312.09 Aligned_cols=143 Identities=43% Similarity=0.678 Sum_probs=131.4
Q ss_pred eccCCCCccccCCCc-hhHHHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHHHHhhccccCchhHHHHHHhhcCC
Q 000820 119 FQKDPIPTSLLKLNS-DLVSRATKLFQIILKYMGVESSDRVTPPSLDERIDFVGKLYKHTLKRVELRDELFAQISKQTRN 197 (1268)
Q Consensus 119 ~~k~pi~~~Ll~~~~-~~~~~A~~~F~~il~~mg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~LrDEiy~Ql~KQ~t~ 197 (1268)
|+++||++|||++++ ++.+.|+++|+.||+||||.+.++ ..++.+++++|++.|+++++||||||||||||||+
T Consensus 1 ~sk~pi~~pLl~~~~~~~~~~A~~iF~~Il~ymgd~~~~~-----~~~~~~l~~~i~~~~~~~~~LrDEiy~QLiKQtt~ 75 (144)
T smart00139 1 YTKDPIKTSLLKLESDELQKEAVKIFKAILKFMGDLPLPK-----PDSHLDLVQFILQKGLAHPELRDEIYCQLIKQLTD 75 (144)
T ss_pred CCCCCCCcccccCCCcHHHHHHHHHHHHHHHHhcCCCCCC-----cchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhC
Confidence 789999999999854 599999999999999999987542 35678999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHhhcccCCChhhHHHHHHHHHhhccCCccchhhhHHHHHHHHHHHhhhccCCCCCCCCHHHHHHH
Q 000820 198 NPDRQCLIKAWELMYLCASSMPPSKDMGGYLTEYVHNVAQGIIIDSEVQTLALNTLNALKRSVKAGPRHTIPGREEIEAL 277 (1268)
Q Consensus 198 np~~~s~~r~W~Ll~~~~~~f~PS~~l~~~L~~~l~~~~~~~~~~~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~Ai 277 (1268)
||+++|..|||+||++||++||||+.|.+||..||++++... ..+.+|.+|++ |+|++|||..||+|+
T Consensus 76 Np~~~s~~rgW~Ll~l~~~~FpPS~~l~~yL~~~l~~~~~~~----~~~~~a~~c~~--------g~R~~~Ps~~Ei~Ai 143 (144)
T smart00139 76 NPSRQSEERGWELLYLCTSLFPPSERLLPYLLQFLSRRADQP----SEQGLAKYCLY--------GARKQPPSRLELEAI 143 (144)
T ss_pred CCCchHHHHHHHHHHHHHhHcCChHHHHHHHHHHHHhcCCCc----cHHHHHHHHHh--------CCCCCCCCHHHHHHh
Confidence 999999999999999999999999999999999999988652 34889999997 999999999999997
Q ss_pred H
Q 000820 278 L 278 (1268)
Q Consensus 278 ~ 278 (1268)
.
T Consensus 144 ~ 144 (144)
T smart00139 144 L 144 (144)
T ss_pred C
Confidence 3
No 32
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=99.97 E-value=5.6e-31 Score=252.33 Aligned_cols=113 Identities=42% Similarity=0.678 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHhhccccCchhHHHHHHhhcCCCCChhhHHHHHHHHHHhhcccCCChhhHHHHHHHHHhhccCCccchhh
Q 000820 166 RIDFVGKLYKHTLKRVELRDELFAQISKQTRNNPDRQCLIKAWELMYLCASSMPPSKDMGGYLTEYVHNVAQGIIIDSEV 245 (1268)
Q Consensus 166 ~~~~~~~i~~~~~~~~~LrDEiy~Ql~KQ~t~np~~~s~~r~W~Ll~~~~~~f~PS~~l~~~L~~~l~~~~~~~~~~~~~ 245 (1268)
+.+++++|++.|+++|+||||||||||||||+||+++++.|||+||++|+++||||+.|.+||..||.+.++....++.+
T Consensus 2 ~~~l~~~Il~~~l~~~~LrDEiy~QliKQtt~np~~~s~~r~W~Ll~~~~~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~ 81 (114)
T PF00784_consen 2 EIDLIQNILQKGLENPELRDEIYCQLIKQTTNNPSPDSCIRGWQLLALCCSCFPPSKDLLPYLRNFLNRHADSQESDPEV 81 (114)
T ss_dssp HHHHHHHHHHHHHH-CCHHHHHHHHHHHHTSS-SSCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCHCHHSTTSHH
T ss_pred HHHHHHHHHHHHHcchhhHHHHHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCcccCCCchH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999987654446788
Q ss_pred hHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHH
Q 000820 246 QTLALNTLNALKRSVKAGPRHTIPGREEIEALL 278 (1268)
Q Consensus 246 ~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~Ai~ 278 (1268)
+.+|.+|+++|+++.+.|+|+++||..||+|+.
T Consensus 82 ~~~a~~c~~~L~~~~~~g~R~~~Ps~~Ei~a~~ 114 (114)
T PF00784_consen 82 GKYAQYCLRRLKRTKKNGPRKFPPSRLEIEAIK 114 (114)
T ss_dssp HCCHHHHHHHHCCHHHH---SS---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccCCCCcCHHHHHhhC
Confidence 999999999999999999999999999999973
No 33
>KOG3530 consensus FERM domain protein EHM2 [General function prediction only]
Probab=99.96 E-value=2.7e-29 Score=283.35 Aligned_cols=284 Identities=17% Similarity=0.172 Sum_probs=247.3
Q ss_pred cCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHH
Q 000820 279 TGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDL 358 (1268)
Q Consensus 279 ~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~ 358 (1268)
.+..+.|.|.|+||+...+.+-+...+.+|++.||..|.|.+.++|||-.++ ....-+|||+.+.|...
T Consensus 7 ~k~~~~C~V~LLd~sdl~~~~pk~akGq~Lld~V~~~ldl~E~DYFGLry~D-----------~~~~~hWLD~tK~I~kq 75 (616)
T KOG3530|consen 7 SKKDVYCRVLLLDGSDLSINFPKTAKGQELLDYVFYHLDLIEKDYFGLRYQD-----------SSKVRHWLDPTKSIKKQ 75 (616)
T ss_pred CCcceEEEEEEecCccceeccCcccchHHHHHHHHHhhceeeeeccceeeec-----------hhhcceecCcchhHHHH
Confidence 3557899999999999999999999999999999999999999999998643 12344788887777644
Q ss_pred HHHHHHhhhcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCC
Q 000820 359 LAEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGS 438 (1268)
Q Consensus 359 l~~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~ 438 (1268)
+.. ..++.|+||++||...+....++.++.++|.|+++|+++|+++|+.+.|++||||.+|+++|||+.
T Consensus 76 vK~-----------gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDYn~ 144 (616)
T KOG3530|consen 76 VKI-----------GPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDYNE 144 (616)
T ss_pred hcc-----------CCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCCCh
Confidence 322 127899999999998888889999999999999999999999999999999999999999999999
Q ss_pred CCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCc
Q 000820 439 PESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPG 518 (1268)
Q Consensus 439 ~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~ 518 (1268)
..|...+.+.++ |+|.+ .++++.+|.+.|++++|+++.+|+..||+.++.+.+||...+.|+-..+.
T Consensus 145 ~~Ht~~yVSefR-f~p~Q------te~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~------ 211 (616)
T KOG3530|consen 145 EEHTGGYVSEFR-FLPNQ------TEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGS------ 211 (616)
T ss_pred hhccccceeeeE-ecccc------cHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCc------
Confidence 999887776665 88877 57889999999999999999999999999999999999999999875443
Q ss_pred eEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCee-----eEEEEEcCcHHHHHHHHHHHHHHHH
Q 000820 519 RIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVL-----HIFQFETKQGEEICVALQTHINDVM 593 (1268)
Q Consensus 519 ~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~-----~~~~feT~q~~eI~~li~~yi~~~~ 593 (1268)
+..||+++.||.+|...+ .+..|-|..|....+.++.+.+++.-.+.. ++|.|+++-+..-.+|+.--|+.+.
T Consensus 212 ey~LGLTptGIlvf~g~~--kig~f~WpkI~KvdFk~kk~~L~v~edd~~~~~q~hTf~F~~~~~~AcKhLWKCavEhha 289 (616)
T KOG3530|consen 212 EYYLGLTPTGILVFEGKK--KIGLFFWPKITKVDFKGKKFTLVVSEDDDQGREQEHTFVFRLPSPKACKHLWKCAVEHHA 289 (616)
T ss_pred eeEeeccCceEEEEECCc--eeeEEecchheEeeccCcEEEEEEeeccccCCcccceEEEeCCCcchhHHHHHHhhhccc
Confidence 789999999999999954 467799999999999999888877766554 6999999999999999999998666
Q ss_pred HHHhhh
Q 000820 594 LRRYSK 599 (1268)
Q Consensus 594 ~~r~~~ 599 (1268)
.-|+-.
T Consensus 290 FFRl~~ 295 (616)
T KOG3530|consen 290 FFRLRC 295 (616)
T ss_pred eEeccC
Confidence 666643
No 34
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=99.96 E-value=1.9e-28 Score=265.50 Aligned_cols=203 Identities=24% Similarity=0.310 Sum_probs=178.6
Q ss_pred CcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHH
Q 000820 281 RKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLA 360 (1268)
Q Consensus 281 ~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~ 360 (1268)
.++.++|+++||+...+.+++++||.||++.||.++||.+..+||||+++. .++...|+++...++|...
T Consensus 2 ~~~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~~~~F~L~~~~~----------~~~~~~~l~~~~~l~~~~~ 71 (207)
T smart00295 2 KPRVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRESEYFGLQFEDP----------DEDLSHWLDPAKTLLDQDV 71 (207)
T ss_pred CcEEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCccceeEEEEEcC----------CCCcCeeCCCccCHHHhcC
Confidence 578899999999999999999999999999999999999999999998542 2233478888888888764
Q ss_pred HHHHhhhcCCCceeeEEEEEEeeccCCccc-CCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCC
Q 000820 361 EFKAAKDRSKGEILHCKLTFKKKLFRESDE-AISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSP 439 (1268)
Q Consensus 361 ~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~-~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~ 439 (1268)
.+ ..++|+||+++|++... ...|+..++++|.|+++||++|++||+.++++.||||++|+++||++..
T Consensus 72 ~~-----------~~~~l~fr~r~~~~~~~~~~~d~~~~~~ly~Q~~~di~~g~~~~~~~~~~~Laal~~q~~~gd~~~~ 140 (207)
T smart00295 72 KS-----------EPLTLYFRVKFYPPDPLQLKEDPTRLNLLYLQVRNDILEGRLPCPEEEALLLAALALQAEFGDYDEE 140 (207)
T ss_pred CC-----------CCcEEEEEEEEccCCHHHhcchhHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHhcCCChH
Confidence 32 25789999999987643 3468888999999999999999999999999999999999999999877
Q ss_pred CCcCchhhhhccccchhhhhhh--cHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeE
Q 000820 440 ESCNDWTSLLERFLPRQVAITR--AKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFF 504 (1268)
Q Consensus 440 ~~~~~~~~~l~~~lP~~~~~~~--~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F 504 (1268)
.+.......+..|+|+.+.... ..+.|..+|.+.|+++.|+++.+|+.+||+++++||+||+++|
T Consensus 141 ~~~~~~~~~~~~~lP~~~~~~~~~~~~~~~~~i~~~~~~~~~~s~~~a~~~yl~~~~~lp~fG~~~f 207 (207)
T smart00295 141 LHVLLKELSLKRFLPKQLLDSEKRTLKEWRERIVSLHKELIGLSPEEAKLKYLELAEKLPTYGVELF 207 (207)
T ss_pred hcCCccccccceeCChhhhhhccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccccccCcccC
Confidence 6533445668999999998765 6789999999999999999999999999999999999999997
No 35
>KOG3529 consensus Radixin, moesin and related proteins of the ERM family [General function prediction only]
Probab=99.89 E-value=1.6e-23 Score=248.62 Aligned_cols=299 Identities=15% Similarity=0.179 Sum_probs=238.0
Q ss_pred CcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHH
Q 000820 281 RKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLA 360 (1268)
Q Consensus 281 ~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~ 360 (1268)
.++.++|..+|..-. +.+++++|++++++.+|..+||.+..+|||-- .....+..||..+..+++.-.
T Consensus 12 ~~~~~rv~~~d~e~~-~~i~~~~t~~~l~dlv~~~~glre~~yfgl~~-----------~d~~~~~~wl~~d~~v~~~d~ 79 (596)
T KOG3529|consen 12 KPINVRVTTMDAELE-FAIQPKTTGKQLFDLVVKTIGLRESWYFGLQY-----------TDSKGEPTWLKLDKKVLDQDV 79 (596)
T ss_pred CCcceeeeehhhhhh-hhhCcchhHHHHHHHHhccCCCchhhhccccc-----------ccCCCCcchhhccchhhhhhc
Confidence 478999999999988 99999999999999999999999999999984 234455667777666433211
Q ss_pred HHHHhhhcCCCceeeEEEEEEeeccCCccc-CCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCC
Q 000820 361 EFKAAKDRSKGEILHCKLTFKKKLFRESDE-AISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSP 439 (1268)
Q Consensus 361 ~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~-~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~ 439 (1268)
... .++.|.|+.+||.+... ...+..+.+|+|.|++..++.+.++|+.++++.||||++|+.+|||+..
T Consensus 80 -----~k~-----~~~~~~f~akfy~E~v~eeli~~~t~~Lffl~vk~~il~~~i~~~~E~~~~las~~vqa~~gdy~~~ 149 (596)
T KOG3529|consen 80 -----PKD-----SPLNFHFHAKFYPEDVAEELIQDITQHLFFLQVKEAILSDEIYCPPETSVLLASYAVQAKYGDYDKE 149 (596)
T ss_pred -----CCC-----CCcceeeeeecchHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHhccccch
Confidence 111 12779999999997666 5677788999999999999999999999999999999999999999877
Q ss_pred CCcCchhhhhccccchhhhhh--hcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCC
Q 000820 440 ESCNDWTSLLERFLPRQVAIT--RAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLP 517 (1268)
Q Consensus 440 ~~~~~~~~~l~~~lP~~~~~~--~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p 517 (1268)
.+...... -...+|..++.. ++...|..+|...|..+.|++.++|+..||.++..+|+||..+|.+....+.
T Consensus 150 ~~~~~~l~-~~~~lP~~~~~q~~~s~~~~e~ri~~~~~~~~~~~re~a~leylki~qdle~ygvny~~i~~k~gt----- 223 (596)
T KOG3529|consen 150 THKVGRLA-GDRLLPQRVLDQHKMTPDMWEDRIKEWYAEHRGMTREEAMLEYLKIAQDLEMYGVNYFEIKNKKGT----- 223 (596)
T ss_pred hhhhhccc-cCcccchhhhhhccccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHhccccccccceeecCCCCCC-----
Confidence 66554333 234778887754 5788999999999999999999999999999999999999999999776654
Q ss_pred ceEEEEEecCceEEECCCcc-chhccccccceeeccCCCCceEEEEEEcCe-eeEEEEEcC---cHHHHHHHHHHHHHHH
Q 000820 518 GRIVLGINKRGVHFFRPVPK-EYLHSAELRDIMQFGSSNSAVFFKMRVAGV-LHIFQFETK---QGEEICVALQTHINDV 592 (1268)
Q Consensus 518 ~~v~LgIn~~GI~il~~~~k-e~l~~~~~~~I~s~~~~~~~~~~~i~~~~~-~~~~~feT~---q~~eI~~li~~yi~~~ 592 (1268)
..||||...|+.+++..++ .+-..|||.+|.+..+.+..| .+...+. ...|.|..+ .-..|..++-+=++.+
T Consensus 224 -~~~lgv~~~gl~~y~~~~k~~P~~~f~w~eirnisf~~kkf--~~k~id~~~~~f~~~~~~~~~~~~~l~~~~~~~~l~ 300 (596)
T KOG3529|consen 224 -DLWLGVDALGLNIYDESDKLTPKIGFPWSEIRNISFNDKKF--HIKPIDKKASDFSFYAPRLRINKRILDLCMGNHELY 300 (596)
T ss_pred -ccccccccCCccccccccCCCCCCCCCccccCCCCCCcccc--cCCCCCcccCcccccccccccchhhhhhhhccchhh
Confidence 6899999999999998774 556679999999999999844 4444433 245777443 4556666666666666
Q ss_pred HHHHhhhcccccCCCCCC
Q 000820 593 MLRRYSKARSAATGSVNG 610 (1268)
Q Consensus 593 ~~~r~~~~~~~~~gs~tG 610 (1268)
|.++........-|-.+|
T Consensus 301 ~rr~~~~ti~vqq~~~~a 318 (596)
T KOG3529|consen 301 MRRRKPDTIEVQQMKAQA 318 (596)
T ss_pred hhcccccccchhhccccc
Confidence 666666655555554444
No 36
>KOG4261 consensus Talin [Cytoskeleton]
Probab=99.89 E-value=6e-24 Score=243.36 Aligned_cols=301 Identities=20% Similarity=0.287 Sum_probs=235.6
Q ss_pred EEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCC--------------CC---Cccc
Q 000820 285 TIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDH--------------DN---EEYI 347 (1268)
Q Consensus 285 ~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~--------------~~---~~~~ 347 (1268)
.+|.++||...++.+|-+-+|.++.-.||.++||.++..|+|.- +.......... .- ..-.
T Consensus 87 lkvrmldg~vkti~vd~sq~v~~L~~~ic~~igItnyeeyslvr--e~~~~~~~~~tgtl~~~~~~m~~~~kme~Lkkkl 164 (1003)
T KOG4261|consen 87 LKVRMLDGAVKTIMVDDSQPVSQLMMTICNKIGITNYEEYSLVR--EDIEEQNEEGTGTLNLKRKLMRKERKMEKLRKKL 164 (1003)
T ss_pred ceeeecccccceeeecccccHHHHHHHHHhccCccchhhhhhhH--HHHHHhcCCCCceEEeehhHHHhhhhhHHHHhhc
Confidence 56899999999999999999999999999999999999998862 11100000000 00 0001
Q ss_pred cCCCcchHHHHHHHHHHhhhcCCCceeeEEEEEEeeccC-CcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHH
Q 000820 348 GLDDNKYIGDLLAEFKAAKDRSKGEILHCKLTFKKKLFR-ESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSA 426 (1268)
Q Consensus 348 ~L~~~~~i~D~l~~~e~~~~~~~~~~~~~~l~fk~~~f~-~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAA 426 (1268)
-++++..|+|...-.. ..+....+.+++|++||+ +......||+.++|+|.|++++++.|.+|++.+.|.++|+
T Consensus 165 ~td~el~wld~~rtlr-----eqgide~et~llRrk~f~sd~nvdsrdpvqlnllyvQ~rD~il~g~hpv~~~kA~e~a~ 239 (1003)
T KOG4261|consen 165 HTDDELNWLDHSRTLR-----EQGIDEEETLLLRRKFFFSDQNVDSRDPVQLNLLYVQARDDILNGSHPVSFEKACEFAG 239 (1003)
T ss_pred ccchhhhhHHHhHHHH-----hcCccHHHHHHHHHHHhhccccccccchHHhhhhhhhhhcccccCcCchhHHHHHHHhc
Confidence 1233334444333221 112333566888888877 4555678999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEE
Q 000820 427 LQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSV 506 (1268)
Q Consensus 427 L~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v 506 (1268)
++.++.||+++...+. . ...+.+|+|+...+... ..+|+..|+.+.+++..+|+.+|..+|+.++.||++||.|
T Consensus 240 ~qshiq~g~~~~~k~k-~-~ld~kd~lpk~y~k~k~----ekKif~~~k~~~~~sei~ak~~y~k~~r~l~tygvtff~V 313 (1003)
T KOG4261|consen 240 FQSHIQFGPHNEDKHK-G-FLDLKDFLPKEYVKQKG----EKKIFQAHKNCGGMSEIDAKVKYVKLARSLKTYGVTFFLV 313 (1003)
T ss_pred cccccccCCchhhccc-c-chhccccChHHHhcccc----chhhhhhhhhhcchhHHHHHHHHHHHhccccccceEEEEe
Confidence 9999999999888777 3 34588899999886554 5689999999999999999999999999999999999999
Q ss_pred EeecCC-CCCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCeeeEEEEEcCcHHHHHHHH
Q 000820 507 RKIDDP-IGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETKQGEEICVAL 585 (1268)
Q Consensus 507 ~~~~~~-~~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~~~~~feT~q~~eI~~li 585 (1268)
+-.-.. ....|. +|||++..+.-.+.++++.|..||+..|..|..+...|.+.+..-. ...+...|..++.|..||
T Consensus 314 Kek~~gknklVpr--lLgv~K~svmr~de~tk~il~ewpl~~V~rw~~s~~~ftldfgdyq-~~yysvqtT~~e~i~Qli 390 (1003)
T KOG4261|consen 314 KEKMKGKNKLVPR--LLGVTKESVMRVDEKTKEILQEWPLTTVRRWAASPKSFTLDFGDYQ-DGYYSVQTTEGEQIAQLI 390 (1003)
T ss_pred hhhccCcccccch--hhhhhHHhhhhcchhhhhHhhhcchhHHHHhccCcceecccccccc-ccccceeeccchHHHHHH
Confidence 744332 222344 9999999999999999999999999999999999996665544332 357888999999999999
Q ss_pred HHHHHHHHHHHhhhcc
Q 000820 586 QTHINDVMLRRYSKAR 601 (1268)
Q Consensus 586 ~~yi~~~~~~r~~~~~ 601 (1268)
.+||.++++++.++.+
T Consensus 391 ~gyidiilkkk~skdh 406 (1003)
T KOG4261|consen 391 AGYIDIILKKKQTKDH 406 (1003)
T ss_pred HHHHHHHHhhhhhhhh
Confidence 9999999988765543
No 37
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=99.86 E-value=4.2e-21 Score=229.68 Aligned_cols=286 Identities=16% Similarity=0.207 Sum_probs=224.9
Q ss_pred CcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHH
Q 000820 281 RKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLA 360 (1268)
Q Consensus 281 ~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~ 360 (1268)
..+.+.|.|+|+.+..+++.+..|..+.++.+|.+|++.+..+|||-- ..+..+..+|++..+-+...+.
T Consensus 21 s~v~~~i~llds~~~eftls~es~gQ~~ld~V~qrL~~~e~~yFgl~~----------~~~k~~~~rWvdleK~lkkql~ 90 (1144)
T KOG0792|consen 21 SCVVCRILLLDSDVVEFTLSSESTGQELLDAVAQRLELREKEYFGLLW----------SPDKPDQIRWVDLEKPLKKQLI 90 (1144)
T ss_pred ceEEEEEEecCCceEEEEEecCCCchhHHHHHhhhhcccccccccccc----------cCCccCccceeccchhHHHhhh
Confidence 578999999999999999999999999999999999999999999331 2344566677777666655544
Q ss_pred HHHHhhhcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCCC
Q 000820 361 EFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPE 440 (1268)
Q Consensus 361 ~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~~ 440 (1268)
++ ...+.++|+++||+..+....++.++..+|.|++.|++.|++||+.+.|++||.|..|++||||+...
T Consensus 91 k~----------a~~p~l~frV~fyV~~p~~LqeE~TRyqyylQvK~di~eGrl~Ct~~qailLA~yavQae~gdy~~~~ 160 (1144)
T KOG0792|consen 91 KV----------ANPPLLHFRVKFYVPDPSGLQEEATRYQYYLQVKKDILEGRLPCTLNQAILLASYAVQAEFGDYNQKQ 160 (1144)
T ss_pred cc----------CCCceEEEEEEEEecChhHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHhhhhhhhcchhhhc
Confidence 32 24678999999999999999999999999999999999999999999999999999999999999776
Q ss_pred CcCchhhhhccccchhhhh-hhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCce
Q 000820 441 SCNDWTSLLERFLPRQVAI-TRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPGR 519 (1268)
Q Consensus 441 ~~~~~~~~l~~~lP~~~~~-~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~~ 519 (1268)
+..... .+. +.|..... ....++...+|.+.|+.+.|+.+.+|...||+.++++..||..||.++...+ ..
T Consensus 161 s~~~l~-~~~-~~p~~~~~~~n~~~e~~~kVa~lhQ~h~G~~~~eAE~~yi~~~~rlegyG~e~~~akD~~g------~~ 232 (1144)
T KOG0792|consen 161 SQDGLE-YLS-VFPQCTLQDENVLEEFEQKVAELHQQHRGLLPAEAETNYINEAKRLEGYGEEFHRAKDLHG------ND 232 (1144)
T ss_pred CCccch-hcc-ccccccccchhhHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHhhccccceecccccCCC------cc
Confidence 654422 122 33444332 2334578899999999999999999999999999999999999999977654 48
Q ss_pred EEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCee-----eEEEEEcCcH---HHHHHHHHHHHHH
Q 000820 520 IVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVL-----HIFQFETKQG---EEICVALQTHIND 591 (1268)
Q Consensus 520 v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~-----~~~~feT~q~---~eI~~li~~yi~~ 591 (1268)
|.|||...||.|+..+ ......|||.+|...+...+ .|.+...+.. ....|.+..+ .-|+.++.....
T Consensus 233 i~lGi~~~Gi~V~~~~-g~~~~~~~W~di~~is~~ks--~~~le~~~~~~~~r~t~~~F~~~~~~~ak~lwk~cv~~H~- 308 (1144)
T KOG0792|consen 233 INLGIARVGILVPGQN-GRQSVKFPWGDIIKISFKKS--TFGLEQRNKDSESRETLLGFNMLDARTAKYLWKLCVEHHK- 308 (1144)
T ss_pred eeeeeeeceeEeeccC-ccccceechhhhhhhhcchh--hhhhhhhhccccchhhhheeeecccchhHHHHHHHHHHhh-
Confidence 9999999999998853 34445899999999988887 4444444332 3447766554 455555555444
Q ss_pred HHHHHhhhc
Q 000820 592 VMLRRYSKA 600 (1268)
Q Consensus 592 ~~~~r~~~~ 600 (1268)
.-|.++.
T Consensus 309 --Ffr~~~~ 315 (1144)
T KOG0792|consen 309 --FFRLKKP 315 (1144)
T ss_pred --Hhhcccc
Confidence 4444433
No 38
>KOG3527 consensus Erythrocyte membrane protein 4.1 and related proteins of the ERM family [General function prediction only]
Probab=99.86 E-value=2.5e-21 Score=226.47 Aligned_cols=295 Identities=16% Similarity=0.194 Sum_probs=243.0
Q ss_pred CCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHH
Q 000820 280 GRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLL 359 (1268)
Q Consensus 280 ~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l 359 (1268)
+++..|+|.++||+...+.++......+++..+|..|+|-+.++|||-.+. ..+.-- |+|..
T Consensus 29 ~k~~~~~vtlld~s~~~~~~ek~~kg~~~~~~vc~~LnliEkdyfgl~~~~-----------~~~~~~-------wlD~~ 90 (975)
T KOG3527|consen 29 TKDAICKVTLLDGSEYSCDVEKHAKGQVLFDKVCEHLNLLEKDYFGLTYLT-----------SSEQKN-------WLDPA 90 (975)
T ss_pred CCCccceEEEeeCCcceeeeecccccchhHHHHhhccchhhhhhceeEEec-----------CCCCcc-------ccccc
Confidence 478999999999999999999999999999999999999999999998633 112222 33443
Q ss_pred HHHHHhhhcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCC
Q 000820 360 AEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSP 439 (1268)
Q Consensus 360 ~~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~ 439 (1268)
...+.. -....|.|.|-.+||.+.+..+......++++.|++.||+.|++||+.-.-+.|..|.+|.++|||+..
T Consensus 91 k~i~k~-----vr~~~w~f~f~vKfyPp~Psql~EditrY~lcLq~R~Dil~GrlPcsfvt~allgsy~vq~E~gdYd~e 165 (975)
T KOG3527|consen 91 KEIKKQ-----VRSFPWNFTFNVKFYPPDPSQLTEDITRYYLCLQLRQDILSGRLPCSFVTHALLGSYTVQSELGDYDPE 165 (975)
T ss_pred hhhhcc-----cccCccceeEeeeeCCCChHhccccchhheehhhhhhhhhcCccccchhhhhhhhhHhHHhHhccCCHH
Confidence 333221 122468899999999988888877788888999999999999999999999999999999999999998
Q ss_pred CCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCce
Q 000820 440 ESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPGR 519 (1268)
Q Consensus 440 ~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~~ 519 (1268)
.+...+.+.++ |-|.+ -.++...|...|+.++|+++.+|.++||+-+.++.+||..+..++...+. +
T Consensus 166 e~~~~y~~df~-~aPnq------t~eledkv~eLhkt~rg~~pa~A~ih~lenakkl~mYgvDlh~aKdsegv------d 232 (975)
T KOG3527|consen 166 EHGSDYLSDFK-FAPNQ------TKELEDKVMELHKTHRGMTPAEAEIHFLENAKKLSMYGVDLHHAKDSEGV------D 232 (975)
T ss_pred Hcccchhhhhc-cCcch------hhhHHHHHHHHHhhhcCCChhHhHHHHHHhhhhhhhcccccccccccccc------e
Confidence 77665555554 55655 45778889999999999999999999999999999999999999887765 8
Q ss_pred EEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCee---eEEEEEcCcHHHHHHHHHHHHHHHHHHH
Q 000820 520 IVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVL---HIFQFETKQGEEICVALQTHINDVMLRR 596 (1268)
Q Consensus 520 v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~---~~~~feT~q~~eI~~li~~yi~~~~~~r 596 (1268)
|.|||+.+|+.++.+ +..+..|.|..|...++...+||++++.+..+ .++.|+.+.-..-..|+...++.+-..|
T Consensus 233 i~lgvca~glliy~d--~lrinrfawPKilKisykR~~FyiKirPge~eq~EstigFklpnhraakrlwk~cvEHhtffr 310 (975)
T KOG3527|consen 233 IMLGVCASGLLIYRD--RLRINRFAWPKILKISYKRSNFYIKIRPGEFEQFESTIGFKLPNHRAAKRLWKVCVEHHTFFR 310 (975)
T ss_pred eeecccccceEEeec--hhhhccccCchhhhhccceeeeEEEecCCccccccccccccccchhhHHhhhHhhhhccceee
Confidence 999999999999998 77788899999999999999999999988874 5788888877777788888887666666
Q ss_pred hhhc-ccccCCCCCCCC
Q 000820 597 YSKA-RSAATGSVNGDL 612 (1268)
Q Consensus 597 ~~~~-~~~~~gs~tGG~ 612 (1268)
.--. ..+..+-++-|+
T Consensus 311 l~~Pe~~pk~~f~~~gs 327 (975)
T KOG3527|consen 311 LVSPEPPPKSKFLVLGS 327 (975)
T ss_pred eccCCCCcccccccccc
Confidence 5332 222224455555
No 39
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 4DXA_B 2EMS_A 2ZPY_A 1J19_A 2D10_B 2D11_B 1GC6_A 2D2Q_A 2EMT_A 2YVC_A ....
Probab=99.78 E-value=1e-18 Score=172.91 Aligned_cols=115 Identities=30% Similarity=0.546 Sum_probs=99.0
Q ss_pred cCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCC-CCCCcCc-hhhhh-----ccccc--hhhhhh
Q 000820 390 EAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVG-SPESCND-WTSLL-----ERFLP--RQVAIT 460 (1268)
Q Consensus 390 ~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~-~~~~~~~-~~~~l-----~~~lP--~~~~~~ 460 (1268)
....|+.+++++|.|+++||+.|+|||+.+++++||||++|+++||++ ....... +...+ ..|+| ..+...
T Consensus 3 ~~~~d~~~~~lly~Q~~~~vl~g~~~~~~e~a~~LAAl~~q~~~gd~~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~ 82 (126)
T PF00373_consen 3 LHIDDPITRHLLYLQARRDVLQGRLPCSEEDAIKLAALQLQAEYGDYNSEQEHSSGYIDPEIKEFQLENFIPKAPKLIKK 82 (126)
T ss_dssp GGTTSHHHHHHHHHHHHHHHHTTSSTS-HHHHHHHHHHHHHHHHTSSTTTTTSSTTTTTGSHHCTCGHGTSSHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHhcCCCcccccCcccccccccchhhhhhhhhhHHHHhh
Confidence 347899999999999999999999999999999999999999999998 4333332 12223 24899 888889
Q ss_pred hcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeE
Q 000820 461 RAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFF 504 (1268)
Q Consensus 461 ~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F 504 (1268)
...+.|...|.+.|++++|+++.+|+..||+++++||+||++||
T Consensus 83 ~~~~~~~~~I~~~~~~l~~~s~~~a~~~fl~~~~~~p~yG~~~F 126 (126)
T PF00373_consen 83 MKQKEWEKRILEQHKKLRGMSPEEAKLQFLQICQSLPTYGSTFF 126 (126)
T ss_dssp STHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHCTSTTTTEEEE
T ss_pred hhHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCCCCceeC
Confidence 99999999999999999999999999999999999999999998
No 40
>KOG3552 consensus FERM domain protein FRM-8 [General function prediction only]
Probab=99.78 E-value=2.2e-19 Score=209.33 Aligned_cols=317 Identities=16% Similarity=0.157 Sum_probs=228.5
Q ss_pred hhccCCCCCCCCHHHHHHHHcCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCC
Q 000820 259 SVKAGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKA 338 (1268)
Q Consensus 259 ~~~~g~R~~~Ps~~Ei~Ai~~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~ 338 (1268)
.+.+|.-.++|+..-+..+ |-.++||+-||.++.|.+|.+|||+||+-.+.++|.|...+.|+|..- -.
T Consensus 164 V~InG~~~~~~salgllcm----PNVLKvyLENGQTKsFkfdatTtVkDVIltl~eKLsi~~iE~FsL~LE-------~~ 232 (1298)
T KOG3552|consen 164 VCINGAPLFPPSALGLLCM----PNVLKVYLENGQTKSFKFDATTTVKDVILTLLEKLSICCIELFSLVLE-------HV 232 (1298)
T ss_pred heecCcccCCcccccceec----hhHHHHHHhcCccceeeecccccHHHHHHHHHHHHhhhhHHHHHHHHH-------HH
Confidence 4567888999988444333 577889999999999999999999999999999999999999999731 00
Q ss_pred CCCCCCccccCCCcchHHHHHHHHHHhhhcCCCceeeEEEEEEeeccCC--cccCCCCchhhhhhHHHhhhhhhcCcccC
Q 000820 339 SDHDNEEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLTFKKKLFRE--SDEAISEPMFVQLSYVQLQHDYVLGNYPV 416 (1268)
Q Consensus 339 ~~~~~~~~~~L~~~~~i~D~l~~~e~~~~~~~~~~~~~~l~fk~~~f~~--~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~ 416 (1268)
....++....|++.+.+..+...- ..-.++.+||.-|-.. .+....|++.++++|.|.+.||++.+|..
T Consensus 233 ~s~~rnkL~LLheqEsl~qV~~Rp---------~sHk~RCLFRItFVPkdp~dLlqrDpvAfeYLYlQsCnDV~QERFap 303 (1298)
T KOG3552|consen 233 KSLKRNKLTLLHEQESLAQVAARP---------GSHKLRCLFRITFVPKDPADLLQRDPVAFEYLYLQSCNDVNQERFAP 303 (1298)
T ss_pred HhcccceeEeecHHHHHHHHHhCC---------cccceeEEEEEEeccCCHHHHHhcCchHHHHHHHhhhhhHhHhhccc
Confidence 112234455677777776665431 2234788898777553 33456899999999999999999999975
Q ss_pred C--hhhHHHHHHHHHHHHhCCCCCCC--CcCchhh--hhccccchhhhhhhcHHHHHHHHHHHHHhcCC-------CCHH
Q 000820 417 G--RDDAAQLSALQILVEIGFVGSPE--SCNDWTS--LLERFLPRQVAITRAKREWELDILSRYRSMEH-------LTKD 483 (1268)
Q Consensus 417 ~--~e~a~~LAAL~~q~~~Gd~~~~~--~~~~~~~--~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~-------~s~~ 483 (1268)
. .+-|.+||||+++...--.+... ....+.. -|++|+|..++..|+.+++++.|....+..+. ++..
T Consensus 304 Elk~elALRLAALhm~~~~~a~~q~qKislKyIEkewGlE~Fvp~sll~~MK~K~ikkaiSh~lK~Nqnl~~p~kklt~l 383 (1298)
T KOG3552|consen 304 ELKPELALRLAALHMHQHALANNQAQKISLKYIEKEWGLERFVPVSLLEGMKRKEIKKAISHFLKLNQNLGSPSKKLTQL 383 (1298)
T ss_pred ccchHHHHHHHHHHHHHHHHhhccccchhhhhhhhhhchhhcccHHHHhhhhHHHHHHHHHHHHHhhhccCChhHHHHHH
Confidence 4 58999999999998644333221 1111111 27899999999999999999999888877643 4788
Q ss_pred HHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCceEEEEEecCceE-EECCCccchhccccccceeec---cCCCCceE
Q 000820 484 DARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPGRIVLGINKRGVH-FFRPVPKEYLHSAELRDIMQF---GSSNSAVF 559 (1268)
Q Consensus 484 ~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~~v~LgIn~~GI~-il~~~~ke~l~~~~~~~I~s~---~~~~~~~~ 559 (1268)
+||.+||+++..+|.||...|.++...+.. ....++|.--+.||. +++.++.-+--...|.+|... .....-..
T Consensus 384 QaklhYL~ila~L~sYGgr~F~atl~~~~~--~se~~LLVgpryGiSqVinak~nv~~~la~f~~~trVe~~~Ede~~~~ 461 (1298)
T KOG3552|consen 384 QAKLHYLDILASLPSYGGRCFSATLREGDR--ESERVLLVGPRYGISQVINAKNNVPQPLAAFEDFTRVEVNREDEVTCS 461 (1298)
T ss_pred HHHHHHHHHHhhhhhccchhhhhhhhhccc--ceeEEEEeccccchhHhhhcccccchhHHHhhhcceeEeeccccceEE
Confidence 999999999999999999999998877532 222344444556875 445544433222334444332 33333334
Q ss_pred EEEEEcCe-eeEEEEEcCcHHHHHHHHHHHHHHHHHHHh
Q 000820 560 FKMRVAGV-LHIFQFETKQGEEICVALQTHINDVMLRRY 597 (1268)
Q Consensus 560 ~~i~~~~~-~~~~~feT~q~~eI~~li~~yi~~~~~~r~ 597 (1268)
+.+.+-+. .-+|..|...|.++..|+.+|...++..+.
T Consensus 462 V~i~mldvk~vtllmEs~da~~lacl~aGYYRLLvd~v~ 500 (1298)
T KOG3552|consen 462 VSIFMLDVKAVTLLMESRDACELACLLAGYYRLLVDPVT 500 (1298)
T ss_pred EEEEEeccceeEEEeeccccchhhHhhhhhhhhhhcchH
Confidence 44554444 467999999999999999999987666543
No 41
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.30 E-value=5.6e-09 Score=143.29 Aligned_cols=44 Identities=14% Similarity=0.265 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHh-cCC---CCHHHHHHHHHHHHhcCCCCCeeeEEEEe
Q 000820 464 REWELDILSRYRS-MEH---LTKDDARQQFLRILRTLPYGNSVFFSVRK 508 (1268)
Q Consensus 464 ~~w~~~I~~~~~~-l~~---~s~~~A~~~fL~~~~~~p~fGs~~F~v~~ 508 (1268)
+.|...|...... +.. -+...|+. .|++++.-...-++|++...
T Consensus 535 ~~y~~Aie~~lg~~l~~ivv~~~~~a~~-~i~~l~~~~~gr~tflpl~~ 582 (1164)
T TIGR02169 535 ERYATAIEVAAGNRLNNVVVEDDAVAKE-AIELLKRRKAGRATFLPLNK 582 (1164)
T ss_pred HHHHHHHHHHhhhhhCCEEECCHHHHHH-HHHHHHhcCCCCeeeccHhh
Confidence 4555555555432 111 14444443 36667777777788887743
No 42
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.27 E-value=1e-08 Score=137.42 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=56.0
Q ss_pred ccccCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 601 RSAATGSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEV 680 (1268)
Q Consensus 601 ~~~~~gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l 680 (1268)
.--++|+||||+ ....+ + ...+.++.++..++..+...+..+..++..+......+...+..++..+..++.++..+
T Consensus 645 ~~~~~G~~tGG~-~~~~~-~-~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1163)
T COG1196 645 LVEPSGSITGGS-RNKRS-S-LAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEEL 721 (1163)
T ss_pred EEeCCeeeecCC-ccccc-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445789999995 33322 2 33333555556666655555555555555555555555555555555555555544444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 681 MADHDRLKSLCDEKDTSLQVVLLEKRSMEAKM 712 (1268)
Q Consensus 681 ~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l 712 (1268)
..++..+..+.+++...+..+..++..+...+
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 753 (1163)
T COG1196 722 KRELAALEEELEQLQSRLEELEEELEELEEEL 753 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444443333333
No 43
>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]
Probab=99.27 E-value=2.4e-11 Score=139.15 Aligned_cols=295 Identities=14% Similarity=0.195 Sum_probs=215.0
Q ss_pred eEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHHHH
Q 000820 284 TTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAEFK 363 (1268)
Q Consensus 284 ~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e 363 (1268)
.++|++++|.++.|.+|..+|+.-|+..++.-+|+. .-.|.+|.|+-... ....+.++...-.+-.++....
T Consensus 4 L~rv~~p~~~~kaVr~dv~~t~~rvi~v~~~~~g~~-~~~~~~~acr~~t~-------i~~~~~~~~~S~~~~~~l~~i~ 75 (974)
T KOG4257|consen 4 LARVFLPGGASKAVRYDVQTTIERVIHVVARGIGIS-QVAVAHFACRLVTG-------ISPQTAGSGDSLWLHPMLRIIQ 75 (974)
T ss_pred ccccccCCCcceeeeecchhheeeeeeeeeeccCCC-chhhhheeeeeccc-------cchhhhhhccccccchhhhhcc
Confidence 467999999999999999999999999999999998 56788888764321 1122223332222222222110
Q ss_pred H---h-hhcCCCceeeEEEEEEeeccCCccc--CCCCchhhhhhHHHhhhhhhcCc-ccCChhhHHHHHHHHHHHHhCCC
Q 000820 364 A---A-KDRSKGEILHCKLTFKKKLFRESDE--AISEPMFVQLSYVQLQHDYVLGN-YPVGRDDAAQLSALQILVEIGFV 436 (1268)
Q Consensus 364 ~---~-~~~~~~~~~~~~l~fk~~~f~~~~~--~~~d~~~~~l~y~Q~~~d~l~G~-~~~~~e~a~~LAAL~~q~~~Gd~ 436 (1268)
- . ..-..+....|++-+|.|+...... ..+|..++-++|.|+++||.+.. ..++.+.|++||+|-+.-.|.+.
T Consensus 76 lp~cy~~~lp~~~s~ewr~elr~Ry~P~~~~El~~eD~st~~Y~~~Qv~~df~q~~a~~~s~evAlql~cL~vrr~Fk~~ 155 (974)
T KOG4257|consen 76 LPHCYARHLPIGVSDEWRLELRMRYMPQSVYELQAEDSSTFVYLHEQVVDDFFQHVAWRSSVEVALQLACLKVRRDFKEH 155 (974)
T ss_pred ccccccccCCCCcchhheeeeeeeeCcHHHHHHHhcccchhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhC
Confidence 0 0 0011122345788888888764433 34788888889999999999755 46888999999999999988755
Q ss_pred CCCC-----CcCchhh--hhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEee
Q 000820 437 GSPE-----SCNDWTS--LLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKI 509 (1268)
Q Consensus 437 ~~~~-----~~~~~~~--~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~ 509 (1268)
.... +...+.. -++.|+|+.+..+.+++.+++.|...|+++.++++++.-..|+.++...-.|....|.|...
T Consensus 156 ~~na~~kksh~e~lekevglksffPksl~~~~Kpk~lkKliqq~fkkfan~n~eE~i~rff~lL~~v~~~d~E~fk~~L~ 235 (974)
T KOG4257|consen 156 QHNAPGKKSHLEDLEKEVGLKSFFPKSLHNPFKPKHLKKLIQQTFKKFANLNPEESIIRFFALLLEVYKFDVELFKCSLG 235 (974)
T ss_pred cccCCCccccHHHHHHHhhHHhhChHhhhcccChHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhHHheeeecc
Confidence 3322 1111211 27889999999999999999999999999999999999999999999988899999999766
Q ss_pred cCCCCCCCceEEEEEecC-ceEEECCCccchhccccccceeecc-----CCCCceEEEEEEcCeeeEEEEEc---CcHHH
Q 000820 510 DDPIGLLPGRIVLGINKR-GVHFFRPVPKEYLHSAELRDIMQFG-----SSNSAVFFKMRVAGVLHIFQFET---KQGEE 580 (1268)
Q Consensus 510 ~~~~~~~p~~v~LgIn~~-GI~il~~~~ke~l~~~~~~~I~s~~-----~~~~~~~~~i~~~~~~~~~~feT---~q~~e 580 (1268)
++ | .-.+.|.|+++ ||.-+....-.+-+...|.+|.+.. .......+.+.+.+....+.+.+ .-|+.
T Consensus 236 s~--W--nisveLvvGPh~Gisy~t~~~~~~t~laefkqi~sI~~c~~~eek~k~~lQlkisga~e~l~It~ssl~~aes 311 (974)
T KOG4257|consen 236 SG--W--NISVELVVGPHTGISYLTNERCDPTRLAEFKQIASITICKMEEEKEKTLLQLKISGAPEPLLITLSSLELAES 311 (974)
T ss_pred cc--c--ceeEEEEecCcccceeccCCCCChHHHHhhhhhheeEEeecccccccceeeeeccCCCCCeEEecChhhHHHH
Confidence 54 4 44558888888 9998877777777888888888774 12223455666666655455544 36889
Q ss_pred HHHHHHHHHH
Q 000820 581 ICVALQTHIN 590 (1268)
Q Consensus 581 I~~li~~yi~ 590 (1268)
|.+||.+|..
T Consensus 312 mAdLiDGYcr 321 (974)
T KOG4257|consen 312 MADLIDGYCR 321 (974)
T ss_pred HHHHHHHHHH
Confidence 9999999998
No 44
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.21 E-value=2.8e-08 Score=136.80 Aligned_cols=94 Identities=21% Similarity=0.345 Sum_probs=48.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 619 HSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSL 698 (1268)
Q Consensus 619 ~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l 698 (1268)
..+..+..++..++..+.+++.++..+...+..++.++..+..++..++..+..++..+..+..++..+..+++.++.++
T Consensus 670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 749 (1179)
T TIGR02168 670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERI 749 (1179)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555555555555555555554444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 000820 699 QVVLLEKRSMEAKM 712 (1268)
Q Consensus 699 ~~l~~e~~~le~~l 712 (1268)
..+..++..+..++
T Consensus 750 ~~~~~~~~~~~~~~ 763 (1179)
T TIGR02168 750 AQLSKELTELEAEI 763 (1179)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444333333333
No 45
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.15 E-value=3.9e-08 Score=135.32 Aligned_cols=97 Identities=15% Similarity=0.275 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
.+.++..+..+++.++..++.+...+..+..++..++.+++.++..+..++..+..+..++..+...+..++.++..+..
T Consensus 668 ~~~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 747 (1179)
T TIGR02168 668 TNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEE 747 (1179)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhhchhh
Q 000820 704 EKRSMEAKMAKLGNQES 720 (1268)
Q Consensus 704 e~~~le~~l~~l~~~~~ 720 (1268)
++..++.+...+..+..
T Consensus 748 e~~~~~~~~~~~~~~~~ 764 (1179)
T TIGR02168 748 RIAQLSKELTELEAEIE 764 (1179)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666665555554433
No 46
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=99.09 E-value=5.2e-11 Score=139.72 Aligned_cols=249 Identities=20% Similarity=0.197 Sum_probs=203.9
Q ss_pred cCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHH
Q 000820 279 TGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDL 358 (1268)
Q Consensus 279 ~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~ 358 (1268)
.++...+.|.++|++...|.+......+-++++||.+|+|-+.++|||--. .....+.||+..+-|...
T Consensus 36 ~gk~~~~~~~~~~~~~~~f~~~~ka~g~vll~~vc~~lnl~e~dyfglef~-----------~~~~~~~wld~~kpi~rq 104 (1036)
T KOG3531|consen 36 LGKICFFFCVMLDDTTEVFLVQHKAIGQVLLDQVCRHLNLVECDYFGLEFQ-----------DINGNHCWLDLEKPILRQ 104 (1036)
T ss_pred CCceEEEEEEEecCceeEEeecccccchHHHHHHHHhhceeeccccceeec-----------cccCceEEecccchHHHH
Confidence 356788899999999999999999999999999999999999999999741 223446778776666554
Q ss_pred HHHHHHhhhcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCC
Q 000820 359 LAEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGS 438 (1268)
Q Consensus 359 l~~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~ 438 (1268)
+.. ..+..+.|-.++|.+++-.....-+..++-.|+..|...|...|+...|+.|+++..|.+.||+..
T Consensus 105 i~~-----------~~~~~~~~~vkf~~p~~~~l~ee~trylf~~q~k~dl~~G~l~c~d~ta~lLss~~~qse~gdf~~ 173 (1036)
T KOG3531|consen 105 IRR-----------PKDVVLRFVVKFFPPDPIQLQEEYTRYLFALQIKRDLALGRLTCNDTTAALLSSHIVQSEIGDFDE 173 (1036)
T ss_pred hcC-----------ccchhhheeecccCCCccccchhHHHHhhhhccccccccCCccCCCchhhhhhcccccccCCchhc
Confidence 432 124568888999988888888887777778899999999999999999999999999999999944
Q ss_pred CCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCc
Q 000820 439 PESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPG 518 (1268)
Q Consensus 439 ~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~ 518 (1268)
..... .-.+..|+|.++ ...+.|..-|+.+.|+++.++-++-|.+++++.+||..+..++..+++
T Consensus 174 ~~d~~--~l~~~~~~p~q~-------~~~~ki~~~h~~hig~tpaesdl~~le~ar~~~~yg~~~h~a~D~Eg~------ 238 (1036)
T KOG3531|consen 174 YLDRE--HLAHTRYLPNQD-------ELEKKIMEFHQKHIGQTPAESDFQLLEIARRLDMYGIRLHPAKDREGT------ 238 (1036)
T ss_pred cccce--eeeeeecCchHH-------HHHHHHHHhhhhhhccCchhhhHHHHHHHHHHhhhccccchhhhcccc------
Confidence 33222 122567888773 346689999999999999999999999999999999999999888876
Q ss_pred eEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcC
Q 000820 519 RIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAG 566 (1268)
Q Consensus 519 ~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~ 566 (1268)
.+-|+|-.-||.+|+..++ +..|.|..|...+.....+.++.+...
T Consensus 239 ~~~lav~hmgi~Vfr~~tk--inTf~wAkirklsfkrk~fLiklhp~~ 284 (1036)
T KOG3531|consen 239 KINLAVAHMGILVFRGLTK--INTFNWAKIRKLSFKRKRFLIKLHPDS 284 (1036)
T ss_pred hHHHHHHhhhhHHHhccee--ccCCCHHHHHHHHHHHHhhhheecccc
Confidence 5678999999999998665 568999999998888876555555443
No 47
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=2e-07 Score=114.71 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcccccceEEEeCCCCcEEecCcEE
Q 000820 991 GITPRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNEKRLKLEIKKDSKGMVLVENVTV 1058 (1268)
Q Consensus 991 Gli~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~~~~~~~i~~~~~~~~~v~~~~~ 1058 (1268)
++|.+-+..+|+.|-..+ ..+ + .++|-|+|.... ..+.|+.-.+.+-.|.||+.
T Consensus 1145 ~~Is~kLkemYQmIT~GG-dAe--L----------ElVDslDPFseG-V~FSVrPpKKSWK~I~NLSG 1198 (1293)
T KOG0996|consen 1145 NIISMKLKEMYQMITLGG-DAE--L----------ELVDSLDPFSEG-VMFSVRPPKKSWKNISNLSG 1198 (1293)
T ss_pred HHHHHHHHHHHHHHhcCC-cce--e----------EeeccCCCcccC-ceEEeeCchhhhhhcccCCc
Confidence 467788889998885433 222 1 345677776542 34445544444455555553
No 48
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=5.9e-07 Score=108.74 Aligned_cols=224 Identities=17% Similarity=0.282 Sum_probs=110.7
Q ss_pred ccCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-
Q 000820 603 AATGSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQ---EAKMQEELDDLKDSLRFEKQKLA- 678 (1268)
Q Consensus 603 ~~~gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e---~~~l~~el~~l~~~l~~~~~~l~- 678 (1268)
-|.|.+|||+ +.+++++..--..+.+++.++...+.+++.++.+++.++.. ...++.+++-....+.-.+..++
T Consensus 656 dP~GtlTGGs--~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~ 733 (1174)
T KOG0933|consen 656 DPSGTLTGGS--RSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQ 733 (1174)
T ss_pred CCCCcccCCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4679999998 44556665555666777777777777777777666655533 34455555544444443333322
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000820 679 ----EVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEK 754 (1268)
Q Consensus 679 ----~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~ 754 (1268)
.+..++..+.+++++.++++.....-++..+..+..++....+... ....++++++.++...+..++...
T Consensus 734 ~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~------~re~rlkdl~keik~~k~~~e~~~ 807 (1174)
T KOG0933|consen 734 NEFHKLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKA------NRERRLKDLEKEIKTAKQRAEESS 807 (1174)
T ss_pred ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------hhHhHHHHHHHHHHHHHHHHHHHH
Confidence 2333444444444444444444444444444444333332211111 111334444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000820 755 ENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHL 834 (1268)
Q Consensus 755 ~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~ 834 (1268)
...+.-+.+.+.+..+.++++.++...+.+...++.++..++.++..+...+...+.+...+.+++......+.....++
T Consensus 808 ~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 808 KELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 44444444444444444444444444444444444445555555555555555444444444444444444444444333
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=99.06 E-value=1.1e-06 Score=103.10 Aligned_cols=92 Identities=20% Similarity=0.316 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
++.++++..++.+++.+....++.+...++.++.+++.++...++....++.+.+.+....+.+..+.+.+..+...+..
T Consensus 141 lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ 220 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQ 220 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555544444444444444444444444444
Q ss_pred HHHHHHHHHHHh
Q 000820 704 EKRSMEAKMAKL 715 (1268)
Q Consensus 704 e~~~le~~l~~l 715 (1268)
.+..|+..+..+
T Consensus 221 ri~~LEedi~~l 232 (546)
T PF07888_consen 221 RIRELEEDIKTL 232 (546)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 50
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.03 E-value=4.6e-07 Score=124.57 Aligned_cols=13 Identities=8% Similarity=0.383 Sum_probs=8.0
Q ss_pred EEcCCHHHHHHHH
Q 000820 1059 VPISTFEEIKSII 1071 (1268)
Q Consensus 1059 ~~v~s~~~~~~~l 1071 (1268)
+.|.+.+.+..+.
T Consensus 624 ~v~~~l~~a~~~~ 636 (1164)
T TIGR02169 624 LVVEDIEAARRLM 636 (1164)
T ss_pred EEEcCHHHHHHHh
Confidence 3556676666664
No 51
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.00 E-value=9.2e-07 Score=117.82 Aligned_cols=18 Identities=11% Similarity=0.351 Sum_probs=13.2
Q ss_pred CCchhHHHHHHHHHHHHH
Q 000820 131 LNSDLVSRATKLFQIILK 148 (1268)
Q Consensus 131 ~~~~~~~~A~~~F~~il~ 148 (1268)
+||.....|=..|+.+|.
T Consensus 147 ~pPHIfavad~AYr~mL~ 164 (1930)
T KOG0161|consen 147 MPPHIFAVADEAYRNMLQ 164 (1930)
T ss_pred CCchHHHHHHHHHHHHHh
Confidence 477777888888887654
No 52
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.96 E-value=7.7e-07 Score=97.43 Aligned_cols=52 Identities=19% Similarity=0.412 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 629 QDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEV 680 (1268)
Q Consensus 629 ~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l 680 (1268)
..++.+++.....+..+...+..........+.++..+..++..++..++..
T Consensus 4 ~~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ 55 (237)
T PF00261_consen 4 QQLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERA 55 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3344444444444444444444444444444444444433333333333333
No 53
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=98.95 E-value=2e-06 Score=115.75 Aligned_cols=95 Identities=18% Similarity=0.324 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQ 699 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~ 699 (1268)
.+..+..++..+...+.....++..++..+..+...+.++...+..++.++..++.++..+..+..++...+..++.++.
T Consensus 668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 747 (1163)
T COG1196 668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666666555555555555555555555444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 700 VVLLEKRSMEAKMAK 714 (1268)
Q Consensus 700 ~l~~e~~~le~~l~~ 714 (1268)
.+..++..++.++..
T Consensus 748 ~~~~~~~~~~~~~~~ 762 (1163)
T COG1196 748 ELEEELEELQERLEE 762 (1163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444333333333
No 54
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.94 E-value=8e-06 Score=96.08 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhccccccccccce
Q 000820 860 MQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIR 894 (1268)
Q Consensus 860 ~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~ 894 (1268)
+....+.+++..++-.+..+..+..+.+++...|+
T Consensus 414 E~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 414 ENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445555555555566666666666655544
No 55
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.94 E-value=1.6e-06 Score=94.98 Aligned_cols=51 Identities=12% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 625 EKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQ 675 (1268)
Q Consensus 625 k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~ 675 (1268)
+.+++.....+..+..++.........+..+...+...+..+...+.....
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~ee 57 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEE 57 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 333333333333333333333333333333333333333333333333333
No 56
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.89 E-value=5.9e-06 Score=110.40 Aligned_cols=46 Identities=26% Similarity=0.321 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Q 000820 676 KLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESE 721 (1268)
Q Consensus 676 ~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~ 721 (1268)
+...++.++..+...+++.+..+..++.++...+.++..++.++..
T Consensus 930 ~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~ 975 (1930)
T KOG0161|consen 930 KKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS 975 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455555555555555555555555555555333
No 57
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.84 E-value=3.5e-06 Score=99.01 Aligned_cols=134 Identities=18% Similarity=0.234 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccC--------CCC---CCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 579 EEICVALQTHINDVMLRRYSKARSAAT--------GSV---NGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLE 647 (1268)
Q Consensus 579 ~eI~~li~~yi~~~~~~r~~~~~~~~~--------gs~---tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~ 647 (1268)
.++.+=+..||+ +-|+.++++... |+. +||. .....+.+....+-+++..+...+++.++..+..
T Consensus 45 ~~LNDRLA~YIe---kVR~LEaqN~~L~~di~~lr~~~~~~ts~i-k~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~ 120 (546)
T KOG0977|consen 45 QELNDRLAVYIE---KVRFLEAQNRKLEHDINLLRGVVGRETSGI-KAKYEAELATARKLLDETARERAKLEIEITKLRE 120 (546)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCCCcch-hHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 356677899998 556655544432 221 1221 1122223333333333433344444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000820 648 ELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLG 716 (1268)
Q Consensus 648 ~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~ 716 (1268)
++.+++....+........+.++......+..++.++..+...+..++.++..+..+...+..++..++
T Consensus 121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 444444444444333333344444333444444444444444444444444444444444444444333
No 58
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=4.6e-06 Score=110.53 Aligned_cols=12 Identities=25% Similarity=0.542 Sum_probs=5.8
Q ss_pred cHHHHHHHHHHH
Q 000820 993 TPRAISELFRIL 1004 (1268)
Q Consensus 993 i~r~~~~lf~~~ 1004 (1268)
+...++.+|..+
T Consensus 739 ~~~~~~~~~~~~ 750 (880)
T PRK02224 739 LERMLNETFDLV 750 (880)
T ss_pred HHHHHHHHHHHH
Confidence 344455555544
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.83 E-value=1.3e-05 Score=99.53 Aligned_cols=76 Identities=14% Similarity=0.105 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEEEEEeeeecccccccCCCCCcc-cccceEEEeCCCCcE--E---ecCcE-EEEcCCHHH
Q 000820 994 PRAISELFRILKKENNKFSFSLKAYMVELYQDTLVDLLLPRNE-KRLKLEIKKDSKGMV--L---VENVT-VVPISTFEE 1066 (1268)
Q Consensus 994 ~r~~~~lf~~~~~~~~~~~~~v~~s~~eiy~e~v~DLL~~~~~-~~~~~~i~~~~~~~~--~---v~~~~-~~~v~s~~~ 1066 (1268)
.++++.||+...-.+.+ .++.+|. |...+|+-..++.. .+.-+.+.+-.+..| + ..|+. .+-+.+-.+
T Consensus 533 ~~~Lr~i~~~~~~~~~~--ptIvvs~---~~~~~y~~~~~p~~~~pTil~~le~ddp~V~N~LID~s~iE~~lLiEdk~E 607 (1074)
T KOG0250|consen 533 ARILRAIMRRLKIPGNR--PTIVVSS---FTPFDYSVGRNPGYEFPTILDALEFDDPEVLNVLIDKSGIEQVLLIEDKKE 607 (1074)
T ss_pred HHHHHHHHHHcCCCCCC--CcEEEec---CCccccccccCCCCCCCceeeeeecCChHHHHHhhhhccceeEEEecchHH
Confidence 56788888777654432 2232222 45666666654433 233344443333222 1 22222 244677788
Q ss_pred HHHHHHhc
Q 000820 1067 IKSIIQRG 1074 (1268)
Q Consensus 1067 ~~~~l~~~ 1074 (1268)
+..++..+
T Consensus 608 a~~~m~s~ 615 (1074)
T KOG0250|consen 608 AREFMQSD 615 (1074)
T ss_pred HHHHHhcC
Confidence 88888766
No 60
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=98.83 E-value=9.8e-06 Score=100.54 Aligned_cols=15 Identities=27% Similarity=0.443 Sum_probs=9.4
Q ss_pred ccccccceeeecccC
Q 000820 887 EDMKGKIRVYCRLRP 901 (1268)
Q Consensus 887 ~~~k~~i~~~~RvRp 901 (1268)
..-+|++.-||-++-
T Consensus 493 ~~P~GPlG~~Vtl~~ 507 (1074)
T KOG0250|consen 493 TPPKGPLGKYVTLKE 507 (1074)
T ss_pred CCCCCCccceeEecC
Confidence 345677777776664
No 61
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=8.4e-08 Score=105.78 Aligned_cols=245 Identities=18% Similarity=0.155 Sum_probs=165.3
Q ss_pred cceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCC--CCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHH
Q 000820 282 KLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSA--HSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLL 359 (1268)
Q Consensus 282 ~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~--~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l 359 (1268)
...+.|.+|||...+|.+..+.|..++++.+|.++|+.+ ..+||||+++..-.+ ..-.++.|.+.+...-.+
T Consensus 107 ~v~l~v~lpng~~i~i~~~~s~tt~~vl~~v~~kl~l~~e~i~~f~lFlvr~~~~~------~ls~vRkl~~fE~p~vs~ 180 (407)
T KOG3784|consen 107 EVELDVFLPNGEKITINCLVSDTASLVLKSVCRKLGLPDELIGYFGLFLVRDNDPG------NLSFVRKLADFESPYVSL 180 (407)
T ss_pred eeEEEEEccCCceEEEEEEecccHHHHHHHHHhhcCCchHhhhheeeeEEeccCCC------cceeeeeecccccccccc
Confidence 467789999999999999999999999999999999983 347999997643211 112344455544444333
Q ss_pred HHHHHhhhcCCCceeeEEEEEEeeccCCcc--cCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCC
Q 000820 360 AEFKAAKDRSKGEILHCKLTFKKKLFRESD--EAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVG 437 (1268)
Q Consensus 360 ~~~e~~~~~~~~~~~~~~l~fk~~~f~~~~--~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~ 437 (1268)
... ....+.+.+|+-+|-... ...++.+.+.|+|.|+..||-.|....+.++.-+|=+++.+
T Consensus 181 t~~---------~~~~~~l~LRk~~~ds~~e~~L~d~~~~v~llY~Qav~D~~~g~~~~~~e~~~QL~slq~q------- 244 (407)
T KOG3784|consen 181 TSN---------YVSACELLLRKWYWDSSRERALMDNRVAVNLLYVQAVQDIERGWVVPTKEQYDQLKSLQEE------- 244 (407)
T ss_pred ccc---------ccccccceeeeeeecchhhhHHhcCchHHHHHHHHHHHHHhcCceeechhhHHHHHHHHHh-------
Confidence 221 112345778777765332 23467788899999999999999998887776677776533
Q ss_pred CCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCC
Q 000820 438 SPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLP 517 (1268)
Q Consensus 438 ~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p 517 (1268)
.-+.+||+++++++.||...|+--...-|....|
T Consensus 245 ----------------------------------------------~~~~~fL~m~R~l~~Y~~l~f~~c~CD~p~kg~~ 278 (407)
T KOG3784|consen 245 ----------------------------------------------ESMKEFLELARTLEGYGYLIFDPCVCDYPEKGTP 278 (407)
T ss_pred ----------------------------------------------hhHHHHHHHHHhhccCCeEecCccccCCCCCCCe
Confidence 2345799999999999999998543333321112
Q ss_pred ceEEEEEecCceEEECCCc-cchhccccccceeeccCCCCceEEE--EEE---cC-eeeEEEEEcCcHHHHHHHHHHHHH
Q 000820 518 GRIVLGINKRGVHFFRPVP-KEYLHSAELRDIMQFGSSNSAVFFK--MRV---AG-VLHIFQFETKQGEEICVALQTHIN 590 (1268)
Q Consensus 518 ~~v~LgIn~~GI~il~~~~-ke~l~~~~~~~I~s~~~~~~~~~~~--i~~---~~-~~~~~~feT~q~~eI~~li~~yi~ 590 (1268)
. ++..+|..=++-+.... ...-..|.|..|..|.......-|. +.. ++ ..+-+.+.|+||..|+..++.-+.
T Consensus 279 ~-~~~~g~~~ll~~~teegq~~q~i~F~~trmr~Wrvte~~la~~FEy~~~~~~d~k~rWv~I~T~qa~lMs~Clq~m~~ 357 (407)
T KOG3784|consen 279 A-VISVGNHELLLACTEEGQQNQEIAFRWTRMRCWRVTEEGLAFSFEYLRDEVKDKKLRWVTIFTPQAILMSECLQSMVS 357 (407)
T ss_pred E-EEEEcchhheeeeccCCCccceeEEEeeeeEeeeccHHHHHHHHHHHHhhccccceeEEEEcCcHHHHHHHHHHHHHH
Confidence 2 33333444344443323 2344579999999997665443322 222 33 345678899999999999999888
Q ss_pred HHHHH
Q 000820 591 DVMLR 595 (1268)
Q Consensus 591 ~~~~~ 595 (1268)
.++.+
T Consensus 358 El~~~ 362 (407)
T KOG3784|consen 358 ELLVK 362 (407)
T ss_pred HHHhh
Confidence 77643
No 62
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.80 E-value=2.6e-05 Score=93.37 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=13.8
Q ss_pred eEeccccCCCCChhhHHhc
Q 000820 935 HMYDQVFDGYATQEDVFED 953 (1268)
Q Consensus 935 f~fd~vf~~~~~q~~v~~~ 953 (1268)
|.=+.||...+.|.-.|..
T Consensus 649 ~~reavt~ghageqyaf~a 667 (1243)
T KOG0971|consen 649 CSREAVTRGHAGEQYAFAA 667 (1243)
T ss_pred cchhhccccchhHHHHHHH
Confidence 4447888888888877754
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=98.79 E-value=8.6e-06 Score=107.94 Aligned_cols=13 Identities=23% Similarity=0.595 Sum_probs=6.2
Q ss_pred HHHHHHHHHhCCC
Q 000820 307 DAVEELAGIIKLS 319 (1268)
Q Consensus 307 ev~~~l~~~lgL~ 319 (1268)
++-..|...||+.
T Consensus 113 ~~~~~i~~llg~~ 125 (880)
T PRK02224 113 DVREEVTELLRMD 125 (880)
T ss_pred HHHHHHHHHHCCC
Confidence 4444444555553
No 64
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.78 E-value=1.5e-05 Score=95.29 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELH 650 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~ 650 (1268)
.++.++.+|.++++-++.+..+-+.++.
T Consensus 228 eLr~QvrdLtEkLetlR~kR~EDk~Kl~ 255 (1243)
T KOG0971|consen 228 ELRAQVRDLTEKLETLRLKRAEDKAKLK 255 (1243)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 4666667776666666554444443333
No 65
>KOG4371 consensus Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain [Signal transduction mechanisms]
Probab=98.77 E-value=5e-09 Score=125.87 Aligned_cols=279 Identities=16% Similarity=0.106 Sum_probs=198.0
Q ss_pred ceEEEEecCCcEEEEEecc--------ccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcch
Q 000820 283 LTTIVFFLDETFEEISYDM--------ATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKY 354 (1268)
Q Consensus 283 ~~~~V~l~dg~~~~v~vd~--------~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 354 (1268)
-.+.+.+.|.......++. -...+||+.-.|.-+.+.+...|||-..+ +++. .+....+.
T Consensus 500 riv~~~~~d~es~~h~in~~v~s~Ch~lvvs~dv~~~pi~~~~iss~~~fGlS~~~-----------dneh-~~~e~~dr 567 (1332)
T KOG4371|consen 500 RIVLHRVEDTESVVHLINQKVESACHSLVVSRDVFSLPIQNMNISSHVFFGLSFLR-----------DNEH-YFIEDHDR 567 (1332)
T ss_pred eeeeeecCCchhHHhhhcchhccceeeEEEcccccCCcccceecccceEeeceeec-----------CCcc-hhhcchHH
Confidence 3444666665544333331 11113444445677777787788886422 2222 23333334
Q ss_pred HHH-HHHHHHHhhhcCCCceeeEEEEEEeeccCCcccCCCCchh---hhhhHHHhhhhhhcCcccCChhhHHHHHHHHHH
Q 000820 355 IGD-LLAEFKAAKDRSKGEILHCKLTFKKKLFRESDEAISEPMF---VQLSYVQLQHDYVLGNYPVGRDDAAQLSALQIL 430 (1268)
Q Consensus 355 i~D-~l~~~e~~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~---~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q 430 (1268)
++. -.++|+..... ....++.+.|+..+|...-....+.+. ...+|.|++.+++........+-+.+|||+++|
T Consensus 568 Lls~sasewk~~As~--~~~PP~~~h~rv~~y~s~l~~is~~~akltrse~Y~~~q~qvLeeq~V~~~da~f~laaFalq 645 (1332)
T KOG4371|consen 568 LLSFSASEWKSVASV--GVKPPYVLHLRVKFYPSILDFISTDVAKLTRSELYLQCQRQVLEEQIVPKRDAAFELAAFALQ 645 (1332)
T ss_pred HHhcCchhhHHHhhc--ccCCCeEEEEEEEeccccCcchhhhhhhhhhhHHHHhhhHHHHhhcccccchhhhhHHhhhhh
Confidence 443 34566655433 355678899999999877666666666 899999999999999999999999999999999
Q ss_pred HHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeec
Q 000820 431 VEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKID 510 (1268)
Q Consensus 431 ~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~ 510 (1268)
++.|+........+ ......|+|..+........+...+-..|...-+.+..+|...|+++++..|.|+++|+.+-...
T Consensus 646 adsGNr~~n~~~gd-ysdP~hY~ps~yss~e~q~li~~~~p~~Hg~~~~t~aseah~kYV~~p~r~pd~e~h~qp~f~~k 724 (1332)
T KOG4371|consen 646 ADSGNRPPNPVIGD-YSDPQHYLPSKYSSFEDQSLIKNILPELHGHYAGTRASEAHHKYVQIPQRHPDFEAHVQPVFRTK 724 (1332)
T ss_pred hhcCCCCCCccccc-cCChhhhcccceecccchhhhhhccccccCchhhcchhhccCcceecccCCCCccceeccccCCC
Confidence 99998877555444 45578899998887777666777776777777788999999999999999999999999985443
Q ss_pred CC-----CCCCCceEEEEEecCceEEECCCc--cchhccccccceeeccCCCCceEEEEEEcCeeeEEEEEcC
Q 000820 511 DP-----IGLLPGRIVLGINKRGVHFFRPVP--KEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETK 576 (1268)
Q Consensus 511 ~~-----~~~~p~~v~LgIn~~GI~il~~~~--ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~~~~~feT~ 576 (1268)
-. ........|+|+..+||.++.+.. ++.+..|||..|.........+.|.-.......+..|.|.
T Consensus 725 P~sar~~kt~~~~pp~~gp~prgIsi~~p~~~a~~~~a~fPpa~v~~lqFd~k~f~Is~~g~p~~~i~~~yt~ 797 (1332)
T KOG4371|consen 725 PTSARPFKTDTGSPPWIGPMPRGISIYEPQGGAREVIAEFPPAQVQTLQFDKKRFVISAVGAPDEQIETFYTD 797 (1332)
T ss_pred CcccCcCcCCCCCCccccccccceeccccCCCCccccCCCCCCCCCceeecCCCceeecCCCCCcceEEeecc
Confidence 10 011445789999999999998865 7899999999999887777755543333333456677665
No 66
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=98.76 E-value=7.1e-09 Score=93.16 Aligned_cols=80 Identities=25% Similarity=0.236 Sum_probs=65.4
Q ss_pred EEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHHHHHhh
Q 000820 287 VFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAEFKAAK 366 (1268)
Q Consensus 287 V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e~~~ 366 (1268)
|++|||+..++.+++.+|++|+++.||.+|||.+.++|||+.. ....+..+||+.++.+.+.+..
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~----------~~~~~~~~wL~~~k~l~~q~~~----- 65 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQ----------VDKDGEHHWLDLDKKLKKQLKK----- 65 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-----------EBTTSSEEEE-SSSBGGGSTBT-----
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEe----------ecCCCcceeccCcccHHHHcCC-----
Confidence 7899999999999999999999999999999999999999961 1234667899999988877543
Q ss_pred hcCCCceeeEEEEEEeeccC
Q 000820 367 DRSKGEILHCKLTFKKKLFR 386 (1268)
Q Consensus 367 ~~~~~~~~~~~l~fk~~~f~ 386 (1268)
...++.|+||++||+
T Consensus 66 -----~~~~~~l~frvkfy~ 80 (80)
T PF09379_consen 66 -----NNPPFTLYFRVKFYP 80 (80)
T ss_dssp -----SSSSEEEEEEESS--
T ss_pred -----CCCCEEEEEEEEECC
Confidence 224689999999984
No 67
>PRK11637 AmiB activator; Provisional
Probab=98.74 E-value=1.2e-05 Score=96.67 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVL 702 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~ 702 (1268)
..+.+++++++++++.+.++..++.++.++..++..++.++..+..++...+.++..++.++..++.++.+++.++...+
T Consensus 44 ~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~ 123 (428)
T PRK11637 44 DNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE 123 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666666556555555555555555555555555555555555555555555555554
Q ss_pred HHHH
Q 000820 703 LEKR 706 (1268)
Q Consensus 703 ~e~~ 706 (1268)
..+.
T Consensus 124 ~~l~ 127 (428)
T PRK11637 124 RLLA 127 (428)
T ss_pred HHHH
Confidence 4443
No 68
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=2.8e-05 Score=94.70 Aligned_cols=222 Identities=17% Similarity=0.219 Sum_probs=99.8
Q ss_pred cccccCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----HH
Q 000820 600 ARSAATGSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLEEL---HERQRQEAKMQEELDDLKDS-----LR 671 (1268)
Q Consensus 600 ~~~~~~gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l---~~l~~e~~~l~~el~~l~~~-----l~ 671 (1268)
.-...||+-.+|++.-..--.+...+.+++..+++++.+++++..++..- ..++.++.-...++.-++.. ..
T Consensus 658 ~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~ 737 (1174)
T KOG0933|consen 658 SGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFH 737 (1174)
T ss_pred CCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHh
Confidence 44555666666663222222344445555555555555555555443322 22333333222333222222 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 000820 672 FEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELH 751 (1268)
Q Consensus 672 ~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~ 751 (1268)
.....+..+..++..++.++.+....+...+.++..++..+.+.....+. .+..+..+++.+..++++-..+.+
T Consensus 738 ~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~d~~~~re~------rlkdl~keik~~k~~~e~~~~~~e 811 (1174)
T KOG0933|consen 738 KLLDDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMKDAKANRER------RLKDLEKEIKTAKQRAEESSKELE 811 (1174)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHh------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555566555555555555555555555544444221 112222333333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 752 AEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDL 827 (1268)
Q Consensus 752 ~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~ 827 (1268)
..+...+.++-+.++++..+...+..+..+...+..+..++..+...+...+......++++......+.....++
T Consensus 812 k~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i 887 (1174)
T KOG0933|consen 812 KRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEI 887 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444444444444444333
No 69
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.73 E-value=3.5e-05 Score=90.86 Aligned_cols=76 Identities=9% Similarity=0.227 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSL 698 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l 698 (1268)
-|......++.++.+.+.++..++..+..++.+...++.-+..+++++.+.+.+++++..++..+.+++.....++
T Consensus 89 iyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eI 164 (1265)
T KOG0976|consen 89 IYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDI 164 (1265)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHH
Confidence 4555566677777777777777777777777777777777777777777777777666666666655554444333
No 70
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.73 E-value=3.6e-05 Score=93.33 Aligned_cols=118 Identities=11% Similarity=0.270 Sum_probs=66.9
Q ss_pred cccccCCCCCCCCCCCcCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 600 ARSAATGSVNGDLSNNVKTH------SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFE 673 (1268)
Q Consensus 600 ~~~~~~gs~tGG~~~~~k~~------~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~ 673 (1268)
.+..--|.||||. -..+.+ ++..+..++.+|++.+++++..+++...++..+...+++++.++.........+
T Consensus 647 DqvskkG~lTgGy-~D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l 725 (1200)
T KOG0964|consen 647 DQVSKKGVLTGGY-EDQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKL 725 (1200)
T ss_pred ceecccCCccccc-hhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444568899998 333333 233444455555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 674 KQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 674 ~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
+.++..+..+...+...+.-....++.+...+..+++....++++
T Consensus 726 ~~e~~~~k~e~~~v~~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 726 KRELNTIKGEKSRVQESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHHHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 555555555555555555555556666666665555555554444
No 71
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5.6e-05 Score=89.11 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=16.7
Q ss_pred EEEEEecCCCccccCCCCchhhHH
Q 000820 1114 KLSFVDLAGSERVKKSGSSGNQLK 1137 (1268)
Q Consensus 1114 ~l~~vDLagse~~~~~~~~~~~~~ 1137 (1268)
-.-.+|-+|+-...+++..+.+-.
T Consensus 957 y~r~~~q~gs~Tp~k~g~~~kkpe 980 (1118)
T KOG1029|consen 957 YVRPKDQEGSGTPPKQGPTPKKPE 980 (1118)
T ss_pred eeeehhccCCCCCCCCCCCCCCch
Confidence 345678888888777777766543
No 72
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=2.4e-05 Score=92.03 Aligned_cols=31 Identities=29% Similarity=0.231 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000820 843 MKEDIDRKNEQTAAILKMQGAQLSELEVLYK 873 (1268)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~ 873 (1268)
..++++-.+.++.++......++-..++.|+
T Consensus 561 k~~eidi~n~qlkelk~~~~~q~lake~~yk 591 (1118)
T KOG1029|consen 561 KLNEIDIFNNQLKELKEDVNSQQLAKEELYK 591 (1118)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444
No 73
>PRK11637 AmiB activator; Provisional
Probab=98.70 E-value=1.8e-05 Score=95.13 Aligned_cols=86 Identities=17% Similarity=0.251 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 629 QDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSM 708 (1268)
Q Consensus 629 ~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~l 708 (1268)
.+++++++++++++++++.++.+++.++.+++.+++.+..++..+..++..++.++..++.+++.++.++..++.+++..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666666656666666666655555555555555555555555555555555555555555555
Q ss_pred HHHHHH
Q 000820 709 EAKMAK 714 (1268)
Q Consensus 709 e~~l~~ 714 (1268)
+..+..
T Consensus 123 ~~~l~~ 128 (428)
T PRK11637 123 ERLLAA 128 (428)
T ss_pred HHHHHH
Confidence 544443
No 74
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.8e-05 Score=95.73 Aligned_cols=105 Identities=19% Similarity=0.331 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEK------SFEQERKALKLQVSELERKLG 807 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~------~le~ei~~l~~~i~~l~~~l~ 807 (1268)
..++.+..++.+.+.++...+.....+..+-..+..++..++++...+-.... ..++.-..++.++..+..-+.
T Consensus 328 ~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ei~~l~~~i~ 407 (1200)
T KOG0964|consen 328 HVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRSEIEKLKRGIN 407 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHHHHHHHHHHHh
Confidence 44555556666666666666666666666655566666666555444322221 112333344555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000820 808 EATLDLATLKSTLASRNMDLAGLESHLKELE 838 (1268)
Q Consensus 808 ~l~~el~~l~~el~~l~~~~~~l~~~~~~l~ 838 (1268)
......+.+..++..++.+..+..++++++.
T Consensus 408 ~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~ 438 (1200)
T KOG0964|consen 408 DTKEQENILQKEIEDLESELKEKLEEIKELE 438 (1200)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555555555544
No 75
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.70 E-value=9e-05 Score=81.02 Aligned_cols=21 Identities=33% Similarity=0.657 Sum_probs=13.7
Q ss_pred ccceEEEeecccCCCcccccccCC
Q 000820 964 GYNVCIFAYGQTGSGKTFTIYGSE 987 (1268)
Q Consensus 964 G~n~~i~ayG~tgsGKT~t~~G~~ 987 (1268)
--|.|+|+-| .|-+.+-.|+.
T Consensus 391 a~nr~vf~~~---e~~at~~~~ps 411 (499)
T COG4372 391 ATNRCVFATG---EGRATPRCGPS 411 (499)
T ss_pred ccceeeeccc---cccccCccCCC
Confidence 4688999855 45566666654
No 76
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=9.5e-05 Score=91.91 Aligned_cols=9 Identities=44% Similarity=0.541 Sum_probs=4.7
Q ss_pred ccccceecc
Q 000820 113 FEDMLCFQK 121 (1268)
Q Consensus 113 ~~~~l~~~k 121 (1268)
.++++.++.
T Consensus 60 ~~d~~~~q~ 68 (1293)
T KOG0996|consen 60 LEDLLNSQP 68 (1293)
T ss_pred hhhhhccCC
Confidence 455555555
No 77
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.65 E-value=0.00047 Score=74.94 Aligned_cols=84 Identities=21% Similarity=0.319 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 630 DLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 630 eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
.+...+.+.....+++..++..+..+..++..++..+.+....+..+...+..++..+.....++...++.+..+...+.
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555555555555555555555555555555555555555555555555555555555444444444
Q ss_pred HHHH
Q 000820 710 AKMA 713 (1268)
Q Consensus 710 ~~l~ 713 (1268)
...+
T Consensus 97 e~~~ 100 (294)
T COG1340 97 EKRN 100 (294)
T ss_pred HHhh
Confidence 4333
No 78
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.65 E-value=0.00013 Score=89.30 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=11.6
Q ss_pred HHHHHHHhhhccccccccccceee
Q 000820 873 KEEQILRKRYFNTIEDMKGKIRVY 896 (1268)
Q Consensus 873 ~~~~~~r~kl~~~i~~~k~~i~~~ 896 (1268)
.++..+.++++..+.++++++.+|
T Consensus 1731 aeL~~Le~r~~~vl~~I~~rv~~y 1754 (1758)
T KOG0994|consen 1731 AELAGLEKRVESVLDHINERVLYY 1754 (1758)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhh
Confidence 333444445555555555555444
No 79
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.64 E-value=0.00014 Score=84.60 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQL---LEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l---~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
+++.+++...++.+++++. ..+.+.+++....++.++..++.-+.+++.........+..+..+++..+.+++.++.
T Consensus 236 ~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~ 315 (581)
T KOG0995|consen 236 EIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQK 315 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443322 3345566666667777777777777777777777777888888888888888888877
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 704 EKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVK 758 (1268)
Q Consensus 704 e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~ 758 (1268)
+.+.|...++...=..++.+....+.+.+...+.+++.+++.+.+++-..+.+++
T Consensus 316 ~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~ 370 (581)
T KOG0995|consen 316 ENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIE 370 (581)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777766543334444444444555555555555555555555444444333
No 80
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.64 E-value=6.2e-05 Score=102.85 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=22.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 725 EKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKIS 772 (1268)
Q Consensus 725 ~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~ 772 (1268)
.......+..++.++..++..+..++..+...+..+..++..+..++.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 333444444455555555555555555554444444444444444433
No 81
>PRK03918 chromosome segregation protein; Provisional
Probab=98.63 E-value=0.00011 Score=97.74 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=9.3
Q ss_pred EEEEecCCCc-cccCCCCchh
Q 000820 1115 LSFVDLAGSE-RVKKSGSSGN 1134 (1268)
Q Consensus 1115 l~~vDLagse-~~~~~~~~~~ 1134 (1268)
+.++.+.|.+ +...+-+.|.
T Consensus 773 ~~i~~l~~g~~~~~~~lS~G~ 793 (880)
T PRK03918 773 VKLFVVYQGKERPLTFLSGGE 793 (880)
T ss_pred eEEEEeCCCCcCChhhCCHhH
Confidence 4555555544 3333444454
No 82
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=98.60 E-value=0.0017 Score=71.14 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=105.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 000820 618 THSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKL-AEVMADHDRLKSLCDEKDT 696 (1268)
Q Consensus 618 ~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l-~~l~~e~~~l~~e~~~le~ 696 (1268)
+.+...+...+..|+.+-..++.+++..+.+...+..++..+...--.+....+..+.-+ ..+-..++.++.+.+.+..
T Consensus 19 ~~t~~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~ 98 (310)
T PF09755_consen 19 SATREQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLAL 98 (310)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444577777777777777777777776666666666666666666655555555444433 3344556666666666655
Q ss_pred HHHHHHHHH-HHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 697 SLQVVLLEK-RSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLE 775 (1268)
Q Consensus 697 ~l~~l~~e~-~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le 775 (1268)
.++.-++-+ ..|..++..+..+...++..++.-. ...+..|...+..+..+.......+..+..+..+++..++.-+
T Consensus 99 ~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~Eq--E~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 99 KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQ--EYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHH
Confidence 544444433 3566666666665554444333211 1234556666666666666666666666666666666665555
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH
Q 000820 776 KKT-EEMEILEKSFEQERKALKLQVS 800 (1268)
Q Consensus 776 ~~~-~el~~~~~~le~ei~~l~~~i~ 800 (1268)
+-+ ..+.+++..+..+...++.++.
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~ 202 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEKLE 202 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 554 5555555666555555555543
No 83
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.59 E-value=0.0002 Score=82.76 Aligned_cols=125 Identities=11% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccCCC----CCCCCCCCcCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 580 EICVALQTHINDVMLRRYSKARSAATGS----VNGDLSNNVKTH-SIELFEKRIQDLSKTVEESQRNADQLLEELHERQR 654 (1268)
Q Consensus 580 eI~~li~~yi~~~~~~r~~~~~~~~~gs----~tGG~~~~~k~~-~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~ 654 (1268)
.+.+=+.+||+ +-|.-.+.+..... +.+.. ..... .-..|..++.++...++.+..+...+..++..+..
T Consensus 8 ~LNdRla~YIe---kVr~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~ 82 (312)
T PF00038_consen 8 SLNDRLASYIE---KVRFLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKE 82 (312)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHH
Confidence 45666888998 55554444443221 11111 01111 22556667777776666666666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 655 QEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 655 e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
++.+++.+++........++.++..+..+++.......+++..++.+..++.-+.
T Consensus 83 e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 83 ELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 6666666666665666666666666666666655555666666666666654443
No 84
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=98.58 E-value=0.00025 Score=77.69 Aligned_cols=66 Identities=12% Similarity=0.162 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 000820 770 KISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLK 835 (1268)
Q Consensus 770 ~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~ 835 (1268)
+++..+.........+......+.....++..-.+.+.+.+..+..++.+.+-++.+...++.-.+
T Consensus 218 ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~lEt~q~~leqeva~le~yyQ 283 (499)
T COG4372 218 ELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQEVAQLEAYYQ 283 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333344444444444444444444444444444444443333
No 85
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=98.58 E-value=0.00028 Score=76.64 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 629 QDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQ 699 (1268)
Q Consensus 629 ~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~ 699 (1268)
.++.+++.++..+.+++..+..++..+...+..+.+.+.+++.+++.+..++...++.+-..+..+.....
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~ 100 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRN 100 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44444444455555555555555555555555555555555555555555555544444444444444333
No 86
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=98.57 E-value=0.00012 Score=86.48 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKM---------------QEELDDLKDSLRFEKQKLAEVMADHDR 686 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l---------------~~el~~l~~~l~~~~~~l~~l~~e~~~ 686 (1268)
+.=|++|.+|...|+..-.++..|+.+-..|+.++..+ +.++..+..-+.+.......++.++.+
T Consensus 38 ~rEK~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~k 117 (546)
T KOG0977|consen 38 EREKKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITK 117 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777777776666666666666666555433 334444444455554555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 687 LKSLCDEKDTSLQVVLLEK 705 (1268)
Q Consensus 687 l~~e~~~le~~l~~l~~e~ 705 (1268)
+..+++++...+.......
T Consensus 118 l~~e~~elr~~~~~~~k~~ 136 (546)
T KOG0977|consen 118 LREELKELRKKLEKAEKER 136 (546)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5555555555544443333
No 87
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.57 E-value=9.9e-05 Score=92.87 Aligned_cols=18 Identities=17% Similarity=0.261 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHHHHHhc
Q 000820 990 PGITPRAISELFRILKKE 1007 (1268)
Q Consensus 990 ~Gli~r~~~~lf~~~~~~ 1007 (1268)
.|+=+.....++..+...
T Consensus 508 ~~ld~~~~~~~~~~l~~~ 525 (562)
T PHA02562 508 GALDAEGTKALLSILDSL 525 (562)
T ss_pred cccchhHHHHHHHHHHhC
Confidence 356677777777777765
No 88
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=98.57 E-value=2.7e-08 Score=125.72 Aligned_cols=494 Identities=18% Similarity=0.082 Sum_probs=286.3
Q ss_pred cccccchhhcchhHHHHHHHHhhhccCCccccccCCCcccccccCccccceeccCCCCccccCCCchhHHHHHHHHHHHH
Q 000820 68 TAIPLIDRFQVEGFLRMMQKQIQSAGKRGFFSKKSTGAYVREKFTFEDMLCFQKDPIPTSLLKLNSDLVSRATKLFQIIL 147 (1268)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~pi~~~Ll~~~~~~~~~A~~~F~~il 147 (1268)
.+++.+.++++.++...+.....+++...++ -...|++.+|.+++..+...++..+...|..++
T Consensus 50 ~~~~~~~~~~~~~~~Dl~~l~~l~e~~~~~n----------------l~~R~~~~~Iy~y~gsil~~lnp~~~~~fiy~~ 113 (1062)
T KOG4229|consen 50 QLIKALHRPQVEDVEDLAQLEDLSEATILEN----------------LLVRYKRNPIYEYLGSILVALNPLQPIPFLYLP 113 (1062)
T ss_pred hhhccccccccccHHHHhhccccchhhhhHH----------------HHHHHccCCceeeechhhhhcCccccccccccH
Confidence 6777889999999988887777766665533 355688899999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCchhhHHHHHHHHHHhhccccCchhHHHHHHhh--cCCCCChhhHHHHHHHHHHhh-cccCCChhh
Q 000820 148 KYMGVESSDRVTPPSLDERIDFVGKLYKHTLKRVELRDELFAQISKQ--TRNNPDRQCLIKAWELMYLCA-SSMPPSKDM 224 (1268)
Q Consensus 148 ~~mg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~LrDEiy~Ql~KQ--~t~np~~~s~~r~W~Ll~~~~-~~f~PS~~l 224 (1268)
+||++++.+.-..... ++..+...| ...++++.+||.|.+ -++-+..+|+.++|++|+++. +.++|....
T Consensus 114 ~~~~ly~~~~~ge~~p-----hifa~ad~~--y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~~ 186 (1062)
T KOG4229|consen 114 RFSKLYSGKPLGEDPP-----HIFAIADLA--YQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQL 186 (1062)
T ss_pred HhhccccccccCCCCc-----chhhhhhhH--HHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhhh
Confidence 9999998332222111 233333333 334555555555554 456688999999999999999 888887765
Q ss_pred HHHHHHHHHhhccCCc-cchhh-------------------hHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHHcCCcce
Q 000820 225 GGYLTEYVHNVAQGII-IDSEV-------------------QTLALNTLNALKRSVKAGPRHTIPGREEIEALLTGRKLT 284 (1268)
Q Consensus 225 ~~~L~~~l~~~~~~~~-~~~~~-------------------~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~Ai~~~~~~~ 284 (1268)
....-..|....+... .+... .+...+-++..+.....++++..|-..++.|..+.+...
T Consensus 187 il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~ 266 (1062)
T KOG4229|consen 187 ILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELK 266 (1062)
T ss_pred hhcchHHHHHhcccCCcccCchhhhhheEEeccccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhh
Confidence 5333332221111100 01111 245556666666666777788888888888888877777
Q ss_pred EEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHHHHH
Q 000820 285 TIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAEFKA 364 (1268)
Q Consensus 285 ~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e~ 364 (1268)
.-+...+..+..+..+...++.|-...+.....|.....+-.|....+++..+ ......++.-+....+..| ..++..
T Consensus 267 ~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~~l~~~m~v~~f~~~~~~si~~-~la~il~~gni~~~~~~~~-~~d~~~ 344 (1062)
T KOG4229|consen 267 AFVLGEAENYEYLEQGALFTISDGEDDVAQFIRLEAAMSVVGFTDKVLGSIFK-SLAAILHIGNISYIKFALD-QQDSAE 344 (1062)
T ss_pred HHhhcCCCCHHHhhccccccccchHHHHHhHHHHHHHHHHhccchhHHHHHHH-hcccceeecceeHHhhhcc-cccchh
Confidence 77777777777788888877754444444433333222222221100000000 0000000111111122222 111111
Q ss_pred hhhcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCCCCc--
Q 000820 365 AKDRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESC-- 442 (1268)
Q Consensus 365 ~~~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~~~~-- 442 (1268)
...........+.+.++...+.+......+.+.-++++.++..+...|..+.....+.......+-..++...++...
T Consensus 345 v~~~~~v~~vA~lL~~~~~~l~~alt~~~~~~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~ 424 (1062)
T KOG4229|consen 345 VENEEAVERVACLLLIKEKLLQEALTARVNVTRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDIS 424 (1062)
T ss_pred cccchHHHHHHHHhhcCHHHhhhhhcccceeeehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCcccccc
Confidence 111111111223466777777766666677777888899999999988887766555443333333333323232222
Q ss_pred -CchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-CCCCeeeEEEEeecCCCCCCCceE
Q 000820 443 -NDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTL-PYGNSVFFSVRKIDDPIGLLPGRI 520 (1268)
Q Consensus 443 -~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~-p~fGs~~F~v~~~~~~~~~~p~~v 520 (1268)
..+...+.-|.+..+ ..+.=+|.-......+....+++..++..++++...- ++-...|+......+.....|..+
T Consensus 425 ~~~~IgiLdiFgfE~f--~~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gi 502 (1062)
T KOG4229|consen 425 DILSIGILDIFGFENF--ERNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGI 502 (1062)
T ss_pred ccceeehhhhhcccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccch
Confidence 233445666777776 2333344444444444445567889999999965544 455566666555555554455555
Q ss_pred EEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCeeeEEEEEcCcHHHHHHHHHHHHHHHH
Q 000820 521 VLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVM 593 (1268)
Q Consensus 521 ~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~~~~~feT~q~~eI~~li~~yi~~~~ 593 (1268)
+..|+..+ +-++..-.++--..+.+.+.....+..+..+...-.+..|.|...++++..+....+.+.
T Consensus 503 l~liDees-----~fP~~td~tl~~k~~~q~~~~~~y~~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~ 570 (1062)
T KOG4229|consen 503 LSLIDEES-----RFPKATDQTLLLKLNMQHGSNNLYVFPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVR 570 (1062)
T ss_pred hheecccC-----cCCchHHHHHHHHhhhhhhcccccccccccccceeeeeeecceehhhhhhHHHhhhhhhh
Confidence 55555222 122444444555555555655555555555555556677777877888777777666444
No 89
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.56 E-value=4.7e-05 Score=94.73 Aligned_cols=91 Identities=15% Similarity=0.265 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVL 702 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~ 702 (1268)
.++.+++.|+.++...+..-++++.++..+......++.++..++.+.++++.++..+...++.=...+..+++.+....
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443433344444455555555555555555555554444444455555544444
Q ss_pred HHHHHHHHHHH
Q 000820 703 LEKRSMEAKMA 713 (1268)
Q Consensus 703 ~e~~~le~~l~ 713 (1268)
.....+|.++.
T Consensus 502 ~~R~~lEkQL~ 512 (697)
T PF09726_consen 502 RQRASLEKQLQ 512 (697)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 90
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.56 E-value=0.00013 Score=99.78 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=25.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKM 659 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l 659 (1268)
++..++.++..++.++..+..+++.+......++.++..+
T Consensus 823 s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 823 TVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777777777666666665555555555555555
No 91
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.55 E-value=0.00024 Score=84.10 Aligned_cols=41 Identities=12% Similarity=0.047 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhhccccccccccceeeecc
Q 000820 859 KMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIRVYCRL 899 (1268)
Q Consensus 859 ~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~~~~Rv 899 (1268)
..+++.....+++.+.+..+..+++.+|++++.+|--+--.
T Consensus 368 r~i~e~k~nve~elqsL~~l~aerqeQidelKn~if~~e~~ 408 (1265)
T KOG0976|consen 368 RSIQEKKENVEEELQSLLELQAERQEQIDELKNHIFRLEQG 408 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 34444444555566667777788888899999887554444
No 92
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.51 E-value=0.00079 Score=77.76 Aligned_cols=93 Identities=25% Similarity=0.270 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 789 EQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEELREMKEDIDRKNEQTAAILKMQGAQLSEL 868 (1268)
Q Consensus 789 e~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L 868 (1268)
...+..++.++..+...+..++.++..++.....++..+.+++..... +.......+..++.++..+..++...
T Consensus 208 ~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~--~~~~~~~~i~~le~el~~l~~~~~~~---- 281 (312)
T PF00038_consen 208 SEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE--EREEYQAEIAELEEELAELREEMARQ---- 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred ccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH--HHHHHHHhhhccchhHHHHHHHHHHH----
Confidence 333333344444444444444444444444444444444333333322 22233333334444444333333333
Q ss_pred HHHhHHHHHHHhhhccccc
Q 000820 869 EVLYKEEQILRKRYFNTIE 887 (1268)
Q Consensus 869 ~~~~~~~~~~r~kl~~~i~ 887 (1268)
...|.++...+-.|..+|.
T Consensus 282 ~~ey~~Ll~~K~~Ld~EIa 300 (312)
T PF00038_consen 282 LREYQELLDVKLALDAEIA 300 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHH
Confidence 3334444444444444443
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=98.49 E-value=0.0002 Score=90.16 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=7.0
Q ss_pred ceeeEeccccCC
Q 000820 932 VKQHMYDQVFDG 943 (1268)
Q Consensus 932 ~~~f~fd~vf~~ 943 (1268)
+.-+.+|..|+.
T Consensus 497 ~~~lilDEp~~~ 508 (562)
T PHA02562 497 TNLLILDEVFDG 508 (562)
T ss_pred cCeEEEecccCc
Confidence 445666766643
No 94
>PRK03918 chromosome segregation protein; Provisional
Probab=98.49 E-value=0.00032 Score=93.29 Aligned_cols=13 Identities=8% Similarity=0.273 Sum_probs=5.0
Q ss_pred CChHHHHHHHHHH
Q 000820 1221 VSSKEVARLKRLV 1233 (1268)
Q Consensus 1221 ~~~~~~~~l~~~~ 1233 (1268)
.++.....+-..+
T Consensus 825 lD~~~~~~l~~~l 837 (880)
T PRK03918 825 LDEERRRKLVDIM 837 (880)
T ss_pred cCHHHHHHHHHHH
Confidence 3344333443333
No 95
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=0.002 Score=75.42 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 632 SKTVEESQRNADQLLEELHERQ---RQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSM 708 (1268)
Q Consensus 632 ~~~l~e~~~~l~~l~~~l~~l~---~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~l 708 (1268)
..+++.++.....+.+.+.+.+ ..++.+++....++..+...+.-...++.........++.+..+++..++|++.+
T Consensus 234 ~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~l 313 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKL 313 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444222 1122333333333333333333333333334444444444444444444444444
Q ss_pred HHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 709 EAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLN 762 (1268)
Q Consensus 709 e~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~ 762 (1268)
..+.+.|+..++...-..+..+..+.+..++..++..++.++..+...+-+++.
T Consensus 314 q~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 314 QKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 444444443332222222233333344444444444444444444444433333
No 96
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.47 E-value=0.00026 Score=88.52 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 661 EELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVV 701 (1268)
Q Consensus 661 ~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l 701 (1268)
.+......++...+.++..+..++.++..+++.+++..+.+
T Consensus 494 ~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~ 534 (1317)
T KOG0612|consen 494 HEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNA 534 (1317)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 97
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.47 E-value=0.0007 Score=79.27 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000820 841 REMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQI 877 (1268)
Q Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 877 (1268)
.+++..+.+.+.+.++-...+...+.+|...|+..+.
T Consensus 590 ~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~ 626 (961)
T KOG4673|consen 590 EDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAER 626 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666655555443
No 98
>PRK01156 chromosome segregation protein; Provisional
Probab=98.47 E-value=0.00044 Score=91.82 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=5.3
Q ss_pred HHHHHhcccc
Q 000820 1205 TYASRVRSIV 1214 (1268)
Q Consensus 1205 ~fa~r~~~i~ 1214 (1268)
.+|.++-.+.
T Consensus 874 ~~~d~ii~~~ 883 (895)
T PRK01156 874 SVADVAYEVK 883 (895)
T ss_pred HhcCeEEEEE
Confidence 4566654444
No 99
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.45 E-value=0.00049 Score=84.20 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQE 656 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~ 656 (1268)
.+.-|+.++.+|+..-..+..+.+-++++++.++.+-
T Consensus 258 Ds~fykdRveelkedN~vLleekeMLeeQLq~lrars 294 (1195)
T KOG4643|consen 258 DSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARS 294 (1195)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcc
Confidence 3455888888887776666666666666665555444
No 100
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.44 E-value=0.00078 Score=77.05 Aligned_cols=63 Identities=11% Similarity=0.235 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKS 689 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~ 689 (1268)
+++..+.++++.+.++....++...++.++.+++.++..++.++.+....+..+...+..+..
T Consensus 39 ~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~ 101 (420)
T COG4942 39 QLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNA 101 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHH
Confidence 344444444444444444444444444444444444333333333333333333333333333
No 101
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=98.42 E-value=1.1e-06 Score=76.50 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=70.1
Q ss_pred cceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHH
Q 000820 282 KLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAE 361 (1268)
Q Consensus 282 ~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~ 361 (1268)
+..++||+.||+++.+.|+...|++||++.++.+.++.+..+|+|++.. +.-...+.+.+.+++.|+++.
T Consensus 2 k~vvkv~~~Dg~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~LvE~~----------P~l~lER~~EDHE~vvdvl~~ 71 (85)
T cd01787 2 KQVVKVYSEDGASKSLEVDERMTARDVCQLLVDKNHCQDDSSWTLVEHL----------PHLQLERLFEDHELVVEVLST 71 (85)
T ss_pred ceEEEEEecCCCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEEEEec----------chhhhhhhccchHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999832 222336789999999999999
Q ss_pred HHHhhhcCCCceeeEEEEEEe
Q 000820 362 FKAAKDRSKGEILHCKLTFKK 382 (1268)
Q Consensus 362 ~e~~~~~~~~~~~~~~l~fk~ 382 (1268)
|.... +-+|+|+|
T Consensus 72 W~~~~--------~n~l~f~k 84 (85)
T cd01787 72 WHSAG--------NSVLFFRK 84 (85)
T ss_pred cccCC--------CcEEEEec
Confidence 96511 34588876
No 102
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.38 E-value=0.00048 Score=92.65 Aligned_cols=6 Identities=0% Similarity=-0.274 Sum_probs=2.2
Q ss_pred HHHHHH
Q 000820 580 EICVAL 585 (1268)
Q Consensus 580 eI~~li 585 (1268)
.+.+||
T Consensus 258 lFk~lI 263 (1486)
T PRK04863 258 LFKHLI 263 (1486)
T ss_pred HHHHHh
Confidence 333333
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=98.38 E-value=0.00082 Score=89.25 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=10.5
Q ss_pred CCCCCCCcHHHHHHHHHHHH
Q 000820 986 SECNPGITPRAISELFRILK 1005 (1268)
Q Consensus 986 ~~~~~Gli~r~~~~lf~~~~ 1005 (1268)
+++..|+=+.....++..+.
T Consensus 832 DEpt~~lD~~~~~~l~~~l~ 851 (895)
T PRK01156 832 DEPTAFLDEDRRTNLKDIIE 851 (895)
T ss_pred eCCCCcCCHHHHHHHHHHHH
Confidence 44445665555555555443
No 104
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=98.38 E-value=0.0013 Score=80.75 Aligned_cols=9 Identities=56% Similarity=0.656 Sum_probs=5.9
Q ss_pred EEEEEEecC
Q 000820 1113 GKLSFVDLA 1121 (1268)
Q Consensus 1113 s~l~~vDLa 1121 (1268)
|.+.-|.|+
T Consensus 542 gdl~EvsL~ 550 (617)
T PF15070_consen 542 GDLEEVSLA 550 (617)
T ss_pred ccccccccc
Confidence 456667776
No 105
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.36 E-value=0.00066 Score=84.91 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQ 653 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~ 653 (1268)
.++.-|+.-...+..+++.+..++.++..++
T Consensus 228 alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~ 258 (775)
T PF10174_consen 228 ALQTVIEEKDTKIASLERMLRDLEDEIYRLR 258 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444443
No 106
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=98.36 E-value=0.00036 Score=87.03 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhcC
Q 000820 139 ATKLFQIILKYMG 151 (1268)
Q Consensus 139 A~~~F~~il~~mg 151 (1268)
.+-.++.++.|+.
T Consensus 27 ~~~~~~~~~~w~~ 39 (697)
T PF09726_consen 27 TFLYVKFLLVWAL 39 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555554
No 107
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.35 E-value=0.0013 Score=81.85 Aligned_cols=56 Identities=27% Similarity=0.404 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQK 676 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~ 676 (1268)
+...+..+.++...++.....+..+...+.++...-.+-+.++..++.....++..
T Consensus 100 f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ 155 (569)
T PRK04778 100 FRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKS 155 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555666666666666666665555555555555555555555544
No 108
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.35 E-value=0.0012 Score=75.67 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHc
Q 000820 1225 EVARLKRLVAYWKEQA 1240 (1268)
Q Consensus 1225 ~~~~l~~~~~~~~~~~ 1240 (1268)
....|+.++..+++.+
T Consensus 656 tm~KlRnELk~Lkeda 671 (772)
T KOG0999|consen 656 TMDKLRNELKALKEDA 671 (772)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445555555555443
No 109
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=98.35 E-value=0.0015 Score=74.91 Aligned_cols=73 Identities=21% Similarity=0.360 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 633 KTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEK 705 (1268)
Q Consensus 633 ~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~ 705 (1268)
+++...+.+++.++..+....++...++.++..++..+..++.++......+++++..++++...+..++.+.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~ 110 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE 110 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 5566666666666666666666666666666666666666666666666666666666666655555555444
No 110
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.34 E-value=0.00036 Score=86.37 Aligned_cols=113 Identities=19% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCc-CCCChHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 605 TGSVNGDLSNNV-KTHSIELFEKRIQDLSKTVEESQR---NADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEV 680 (1268)
Q Consensus 605 ~gs~tGG~~~~~-k~~~l~~~k~~l~eL~~~l~e~~~---~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l 680 (1268)
+|-||||++.++ ....+..++..-..|..++.++.. ++.+.+..+..++..+.-++.+++.++..+.+.+.++...
T Consensus 637 sGlmsGG~s~~~wdek~~~~L~~~k~rl~eel~ei~~~~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~ 716 (1141)
T KOG0018|consen 637 SGLMSGGSSGAKWDEKEVDQLKEKKERLLEELKEIQKRRKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRT 716 (1141)
T ss_pred cceecCCccCCCcCHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899984421 111223333333333333333332 2222233333344444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000820 681 MADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGN 717 (1268)
Q Consensus 681 ~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~ 717 (1268)
+.++....-++.+++.+++..+.+++.|+.++++...
T Consensus 717 ~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 717 ESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444555555555555555555444443
No 111
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=98.33 E-value=0.00077 Score=82.95 Aligned_cols=83 Identities=18% Similarity=0.105 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDL 813 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el 813 (1268)
..+...++.+.+++++....++......+++.+++..+++++.+.......-+..++.....+.+....++.++.++...
T Consensus 1591 ~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~ 1670 (1758)
T KOG0994|consen 1591 RDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYY 1670 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555555666666666655555544444444444444444444444444444444433
Q ss_pred HHH
Q 000820 814 ATL 816 (1268)
Q Consensus 814 ~~l 816 (1268)
+..
T Consensus 1671 ~~~ 1673 (1758)
T KOG0994|consen 1671 ELV 1673 (1758)
T ss_pred HHH
Confidence 333
No 112
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.33 E-value=0.0019 Score=79.03 Aligned_cols=94 Identities=13% Similarity=0.148 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRL---KSLCDEKDTSL 698 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l---~~e~~~le~~l 698 (1268)
...+.++.+|+++++++..+++.+..++..+...+..+..+++..+....+++.++.-.+.-..-+ ...++.++.-+
T Consensus 324 ~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v 403 (594)
T PF05667_consen 324 EEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALV 403 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666666655555555544332222211 33344444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 000820 699 QVVLLEKRSMEAKMAKL 715 (1268)
Q Consensus 699 ~~l~~e~~~le~~l~~l 715 (1268)
+.....+..|..+.+..
T Consensus 404 ~~s~~rl~~L~~qWe~~ 420 (594)
T PF05667_consen 404 EASEQRLVELAQQWEKH 420 (594)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 113
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.32 E-value=0.0015 Score=79.35 Aligned_cols=87 Identities=13% Similarity=0.232 Sum_probs=39.1
Q ss_pred CChhhHHHHHHHHHHHH--hCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000820 416 VGRDDAAQLSALQILVE--IGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRIL 493 (1268)
Q Consensus 416 ~~~e~a~~LAAL~~q~~--~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~ 493 (1268)
.++.--++||+|..-+. +|-|.- ...+...|...+|+..+..... +-...|.++...=.+--..+|++.+
T Consensus 180 ~t~qgqCrlapLI~lIqds~~lY~y---~vkmlfkLHs~vp~dtLeghRd-----Rf~~qf~rLk~FY~~~S~lqYfk~L 251 (980)
T KOG0980|consen 180 LTPQGQCRLAPLIPLIQDSSGLYDY---LVKMLFKLHSQVPPDTLEGHRD-----RFHTQFERLKQFYADCSNLQYFKRL 251 (980)
T ss_pred cCCCcceehhHHHHHHHhhhhHHHH---HHHHHHHHHcCCCHHHhhhHHH-----HHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33444567777765553 221110 0011233566778766644332 2222333332222222235677666
Q ss_pred hcC---CCCCeeeEEEEeec
Q 000820 494 RTL---PYGNSVFFSVRKID 510 (1268)
Q Consensus 494 ~~~---p~fGs~~F~v~~~~ 510 (1268)
-+. |.-.=.||......
T Consensus 252 I~IP~LP~~~Pnf~~~sdl~ 271 (980)
T KOG0980|consen 252 IQIPTLPEDAPNFLRQSDLE 271 (980)
T ss_pred hcCCCCCCCCcccccccchh
Confidence 544 45455566554433
No 114
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=98.30 E-value=0.0018 Score=81.12 Aligned_cols=59 Identities=19% Similarity=0.240 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 660 QEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 660 ~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
+..++.++.++...+.++..+..++..+.....+...-+..+...+...+.....++.+
T Consensus 286 K~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsd 344 (775)
T PF10174_consen 286 KSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSD 344 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444444444444444444444444444444444443333333
No 115
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=98.29 E-value=0.0054 Score=75.47 Aligned_cols=40 Identities=18% Similarity=0.335 Sum_probs=27.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKM 659 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l 659 (1268)
.+..+++.+..++.+..-.+.+++++..+...++-+.+.+
T Consensus 302 eiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL 341 (1195)
T KOG4643|consen 302 EIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQL 341 (1195)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888777777777776666655555444433
No 116
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.27 E-value=0.0024 Score=86.22 Aligned_cols=9 Identities=33% Similarity=0.305 Sum_probs=3.6
Q ss_pred cHHHHHHHH
Q 000820 577 QGEEICVAL 585 (1268)
Q Consensus 577 q~~eI~~li 585 (1268)
.+.+.-.+|
T Consensus 277 ~~eERR~li 285 (1486)
T PRK04863 277 HANERRVHL 285 (1486)
T ss_pred CHHHHHHHH
Confidence 344444333
No 117
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.27 E-value=2.1e-06 Score=98.02 Aligned_cols=137 Identities=12% Similarity=0.144 Sum_probs=112.3
Q ss_pred hccccchhhhhhhcHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCceEEEEEecCc
Q 000820 449 LERFLPRQVAITRAKREWELDILSRYRSMEHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPGRIVLGINKRG 528 (1268)
Q Consensus 449 l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~~v~LgIn~~G 528 (1268)
...|+.+.+.+..+.+++..+|+++|+..+.|+-.+|+..||+-.+++|-||.++|-|+..... ..=+|||..+-
T Consensus 502 p~~~vSPr~~rk~ksKQ~~~RILEAHqNVaQlsl~EAKLrfIQAWQSLPeFGityfivRFkGsr-----KeEllGVA~NR 576 (664)
T KOG3727|consen 502 PECYVSPRYVRKLKSKQITQRILEAHQNVAQLSLTEAKLRFIQAWQSLPEFGITYFIVRFKGSR-----KEELLGVAYNR 576 (664)
T ss_pred chhhcCHHHHHHHhhHHHHHHHHHHhhhHhhhhhHHHHHHHHHHHhhccccCcEEEEEEecCcc-----hHHHHhhhhhh
Confidence 4457766777667777899999999999999999999999999999999999999999876543 24589999999
Q ss_pred eEEECCCccchhccccccceeeccCCCCceEEEEEEcCee-eEEEEEcCcHHHHHHHHHHHHH
Q 000820 529 VHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVL-HIFQFETKQGEEICVALQTHIN 590 (1268)
Q Consensus 529 I~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~-~~~~feT~q~~eI~~li~~yi~ 590 (1268)
+.-+|-.++..+..|.|+.+..|...=..-.+.|...+.. ..|.+-+-...-....|.+||=
T Consensus 577 LirmDlatGd~iKTWRfsnMKqWNVNWeir~v~IeF~dev~iaFsc~SADCKVVHEfIGGYIF 639 (664)
T KOG3727|consen 577 LIRMDLATGDHIKTWRFSNMKQWNVNWEIRQVMIEFEDEVNIAFSCLSADCKVVHEFIGGYIF 639 (664)
T ss_pred eeeeecccCCceeeeeecchhhhcccceeeEEEEEecccceEEEEeecccchhhhhhccceEE
Confidence 9999999999999999999999976655445566666554 4577766666666777777774
No 118
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=98.27 E-value=0.0026 Score=71.63 Aligned_cols=107 Identities=10% Similarity=0.126 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHH
Q 000820 646 LEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAE 725 (1268)
Q Consensus 646 ~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~ 725 (1268)
.+.++.++.+...++.....++.....++.+.++.-..+.++..+++..+.+++.+++....|..++.+..-..++.+..
T Consensus 294 s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~m 373 (622)
T COG5185 294 SQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELM 373 (622)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHH
Confidence 33444455555555555555555566666666666666677777777777777777776666666665544334444444
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000820 726 KNLVLTNNQTLHELQRELKICNEELHA 752 (1268)
Q Consensus 726 ~e~~~~~~~~l~~l~~el~~l~~el~~ 752 (1268)
..+.+.+..++.....+.+++...+..
T Consensus 374 n~Ere~L~reL~~i~~~~~~L~k~V~~ 400 (622)
T COG5185 374 NQEREKLTRELDKINIQSDKLTKSVKS 400 (622)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 444444445555555555555444433
No 119
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.27 E-value=0.0028 Score=85.92 Aligned_cols=97 Identities=13% Similarity=0.326 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEK-DTSLQV 700 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~l-e~~l~~ 700 (1268)
+.++.+++.++..+.......+++++.+.....++..+..++..++..+...+..+..+..+...++.++.+. +.....
T Consensus 603 e~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 682 (1201)
T PF12128_consen 603 EELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEAKEERKEQ 682 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666666666666666666666666666666666655555555555555555444433 222334
Q ss_pred HHHHHHHHHHHHHHhhch
Q 000820 701 VLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 701 l~~e~~~le~~l~~l~~~ 718 (1268)
++.++..++.++..+..+
T Consensus 683 ~~~~l~~l~~~l~~~~~e 700 (1201)
T PF12128_consen 683 IEEQLNELEEELKQLKQE 700 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444433
No 120
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=0.0008 Score=80.68 Aligned_cols=61 Identities=23% Similarity=0.185 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHHHHhh-ccccCchhHHHHHHhhcCCCCChh
Q 000820 137 SRATKLFQIILKYMGVESSDRVTPPSLDERIDFVGKLYKHTL-KRVELRDELFAQISKQTRNNPDRQ 202 (1268)
Q Consensus 137 ~~A~~~F~~il~~mg~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~LrDEiy~Ql~KQ~t~np~~~ 202 (1268)
-.|+++|.++|+--|-.--+- ...+-.-|-+|+..-- .++.+|||...-||--+..||.-.
T Consensus 140 ~~aIqLlsalls~r~~e~q~~-----ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQ 201 (970)
T KOG0946|consen 140 LYAIQLLSALLSCRPTELQDA-----LLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQ 201 (970)
T ss_pred hHHHHHHHHHHhcCCHHHHHH-----HHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHH
Confidence 348888888887655110000 0000001223333322 446799999999999999998653
No 121
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=98.23 E-value=0.0029 Score=76.92 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcccccCCCC
Q 000820 1200 SYNSLTYASRVRSIVNDPNK 1219 (1268)
Q Consensus 1200 t~~tL~fa~r~~~i~~~~~~ 1219 (1268)
+-.-|--|+|+|.=++.|+.
T Consensus 879 sTaQLVaASrVKA~k~S~~l 898 (980)
T KOG0980|consen 879 STAQLVAASRVKADKDSKKL 898 (980)
T ss_pred HHHHHHHHHHhhccccchhh
Confidence 33445667777766655543
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=98.21 E-value=0.0033 Score=79.15 Aligned_cols=45 Identities=18% Similarity=0.207 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 665 DLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 665 ~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
-++.++.....++...+.++..++..+.+++.+++.++.....+.
T Consensus 491 l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~ 535 (1317)
T KOG0612|consen 491 LLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA 535 (1317)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555444443
No 123
>cd00836 FERM_C FERM_C domain. The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs), the tyrosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=98.20 E-value=9.1e-06 Score=74.94 Aligned_cols=85 Identities=11% Similarity=0.131 Sum_probs=67.7
Q ss_pred CCCeeeEEEEeecCCCCCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcC-eeeEEEEEcC
Q 000820 498 YGNSVFFSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAG-VLHIFQFETK 576 (1268)
Q Consensus 498 ~fGs~~F~v~~~~~~~~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~-~~~~~~feT~ 576 (1268)
+||..+|.|+...+. +++|||++.||.+++... ++..|||.+|.+++..++.|++++.... ...++.|.++
T Consensus 1 ~YGv~~~~vkd~~g~------~~~lGV~~~Gi~v~~~~~--~~~~f~W~~I~~isf~~k~F~i~~~~~~~~~~~~~f~~~ 72 (92)
T cd00836 1 MYGVDLHPVKDKKGT------ELLLGVTAEGILVYDDGT--PINEFPWPEIRKISFKRKKFTLKVRDKDGQEITLSFQTP 72 (92)
T ss_pred CCCeeeEEEECCCCC------eEEEEEeCCCcEEecCCC--EEEEEEcccceEEEEcCCEEEEEEecCcCceeeEEEECC
Confidence 699999999876643 799999999999999865 7889999999999999998887777553 2467888888
Q ss_pred c---HHHHHHHHHHHHH
Q 000820 577 Q---GEEICVALQTHIN 590 (1268)
Q Consensus 577 q---~~eI~~li~~yi~ 590 (1268)
. +..|..++.+|+.
T Consensus 73 s~~~~k~lwk~~ve~H~ 89 (92)
T cd00836 73 SHRACKYLWKLCVEQHA 89 (92)
T ss_pred CHHHHHHHHHHHHhhhh
Confidence 4 4555555555543
No 124
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.20 E-value=0.003 Score=83.82 Aligned_cols=78 Identities=15% Similarity=0.241 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 641 NADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 641 ~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
++..+...+..+..+...+..++..+......+.....++..+...+...++...++++.+..++..+..++..+...
T Consensus 81 e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~~~qkr~l~~~le~~~~ele~l~~~n~~l~~ql~ss~~~ 158 (1822)
T KOG4674|consen 81 ELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSELQEQKRQLMELLERQKAELEALESENKDLNDQLKSSTKT 158 (1822)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444444444444444444444444444444444555555555555555555554444433
No 125
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=98.19 E-value=0.0053 Score=68.13 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccccceeeecccC
Q 000820 841 REMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIRVYCRLRP 901 (1268)
Q Consensus 841 ~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~~~~RvRp 901 (1268)
..++++..++..++......-+.....+.+...-++....++.|+.-+.-+.+.|..-.-|
T Consensus 288 ~~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~Ne~~~~g~s~~Va~~asa 348 (552)
T KOG2129|consen 288 VDHREENERLQRKLINELERREALCRMLSESESSLEMDEERYLNEFVDFGDSVEVALHASA 348 (552)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhccCCceeeecccch
Confidence 4455555555555655555555566666676677778888999998888887776654443
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.18 E-value=0.0044 Score=84.06 Aligned_cols=9 Identities=22% Similarity=0.516 Sum_probs=6.0
Q ss_pred HHHHHHHHH
Q 000820 140 TKLFQIILK 148 (1268)
Q Consensus 140 ~~~F~~il~ 148 (1268)
+..|+.|+.
T Consensus 143 ~~eYR~IIq 151 (1201)
T PF12128_consen 143 TSEYRAIIQ 151 (1201)
T ss_pred HHHHHHHHc
Confidence 666777765
No 127
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00053 Score=82.16 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCCccccC--CCchhHHHHHHHHHHHHHhcCCCCCCCCCCCCchhhHHHHHHHHHHhhccccCchhHHHHHHhhcCCCCC
Q 000820 123 PIPTSLLK--LNSDLVSRATKLFQIILKYMGVESSDRVTPPSLDERIDFVGKLYKHTLKRVELRDELFAQISKQTRNNPD 200 (1268)
Q Consensus 123 pi~~~Ll~--~~~~~~~~A~~~F~~il~~mg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~LrDEiy~Ql~KQ~t~np~ 200 (1268)
||-..|-. .|++..+.|+++-..+.. -+|.+.-...+. ...++.-+|-..-+++++ +.+++=|.+..-+
T Consensus 65 ~li~vL~~D~~D~E~ik~~LdTl~il~~-~dd~~~v~dds~---qsdd~g~~iae~fik~qd-----~I~lll~~~e~~D 135 (970)
T KOG0946|consen 65 PLIQVLQRDYMDPEIIKYALDTLLILTS-HDDSPEVMDDST---QSDDLGLWIAEQFIKNQD-----NITLLLQSLEEFD 135 (970)
T ss_pred HHHHHHhhccCCHHHHHHHHHHHHHHHh-cCcchhhcccch---hhhHHHHHHHHHHHcCch-----hHHHHHHHHHhhc
Confidence 44444432 367777778777544332 232211100110 113444455555444443 2344444554444
Q ss_pred hhhHHHHHHHHHHhhcccCC
Q 000820 201 RQCLIKAWELMYLCASSMPP 220 (1268)
Q Consensus 201 ~~s~~r~W~Ll~~~~~~f~P 220 (1268)
-.-..-+-+|+..++++-||
T Consensus 136 F~VR~~aIqLlsalls~r~~ 155 (970)
T KOG0946|consen 136 FHVRLYAIQLLSALLSCRPT 155 (970)
T ss_pred hhhhhHHHHHHHHHHhcCCH
Confidence 44455566677777776665
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=98.17 E-value=0.0046 Score=75.87 Aligned_cols=94 Identities=16% Similarity=0.242 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 000820 625 EKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSL---CDEKDTSLQVV 701 (1268)
Q Consensus 625 k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e---~~~le~~l~~l 701 (1268)
+.+..+-++++++++.+++++..++..+..+++.+..++..+..++++.+.+...++.+..-.+.. +.+.+..+..+
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL 399 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKL 399 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 344455555666666666666666666666555555555555555555555555555444322222 22233344444
Q ss_pred HHHHHHHHHHHHHhhch
Q 000820 702 LLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 702 ~~e~~~le~~l~~l~~~ 718 (1268)
+.-+..-..++..|..+
T Consensus 400 ~~~v~~s~~rl~~L~~q 416 (594)
T PF05667_consen 400 QALVEASEQRLVELAQQ 416 (594)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 129
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=98.17 E-value=0.0084 Score=76.29 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000820 765 VLLEQKISKLEKKTEEMEILEKSF--EQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKE 836 (1268)
Q Consensus 765 ~~l~~~l~~le~~~~el~~~~~~l--e~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~ 836 (1268)
..+..++..++.++.++..++... ...+..+..++.+++.++..++.++..+..++..++.+++.++.++..
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 467 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDE 467 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333321 233344444444444444444444444444444444444444444433
No 130
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.15 E-value=0.0037 Score=63.03 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHER 652 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l 652 (1268)
.+..++.-++.+++..+..+..+..++.++
T Consensus 8 ~lnrri~~leeele~aqErl~~a~~KL~Ea 37 (205)
T KOG1003|consen 8 ALNRRIQLLEEELDRAQERLATALQKLEEA 37 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444443333333333333333
No 131
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=98.14 E-value=0.0064 Score=80.89 Aligned_cols=18 Identities=17% Similarity=0.233 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHcC
Q 000820 1224 KEVARLKRLVAYWKEQAG 1241 (1268)
Q Consensus 1224 ~~~~~l~~~~~~~~~~~~ 1241 (1268)
+++..|+.++..++...+
T Consensus 661 e~~~~l~~ev~~ir~~l~ 678 (1822)
T KOG4674|consen 661 EDFDSLQKEVTAIRSQLE 678 (1822)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666666655554
No 132
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.14 E-value=0.016 Score=68.30 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQ 655 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e 655 (1268)
..+-.++..+++++..+-++.+.++.+...++++
T Consensus 405 ~e~~QRva~lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 405 EEYHQRVATLEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4556666666666666655555555555544443
No 133
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=98.14 E-value=0.012 Score=72.89 Aligned_cols=55 Identities=18% Similarity=0.229 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000820 784 LEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELE 838 (1268)
Q Consensus 784 ~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~ 838 (1268)
++.++++++..++.+...|-..+...+..++..+.++......+..+.+.+..+.
T Consensus 266 EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 266 EIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555555555555555555555555555555555555555544444
No 134
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.10 E-value=0.014 Score=67.29 Aligned_cols=19 Identities=21% Similarity=0.522 Sum_probs=8.6
Q ss_pred ChHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEES 638 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~ 638 (1268)
.++.++.++..|..++++.
T Consensus 9 ~ve~lr~eierLT~el~q~ 27 (772)
T KOG0999|consen 9 EVEKLRQEIERLTEELEQT 27 (772)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 135
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.08 E-value=0.0033 Score=78.36 Aligned_cols=172 Identities=17% Similarity=0.262 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
...++..+++++.+....+..+ ++...+.....+..+++.+-+.++.........+.....+...+..+......+..
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~ 331 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKE 331 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 4455556665555555544444 24455555555555555555555555555555555555555555555555555544
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 704 EKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEI 783 (1268)
Q Consensus 704 e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~ 783 (1268)
++..+.....=- ....+....+.+++..++..+..+...+.........++.++..+..++..++.+..++..
T Consensus 332 Ei~~l~~sY~l~-------~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e 404 (569)
T PRK04778 332 EIDRVKQSYTLN-------ESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSE 404 (569)
T ss_pred HHHHHHHccccC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444432211 1122233333344444444444444443333333444444444444444444444433333
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000820 784 LEKSFEQERKALKLQVSELER 804 (1268)
Q Consensus 784 ~~~~le~ei~~l~~~i~~l~~ 804 (1268)
.+..++......+.++..++.
T Consensus 405 ~l~~Lrk~E~eAr~kL~~~~~ 425 (569)
T PRK04778 405 MLQGLRKDELEAREKLERYRN 425 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 136
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=98.07 E-value=0.0061 Score=61.52 Aligned_cols=16 Identities=19% Similarity=0.135 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 000820 697 SLQVVLLEKRSMEAKM 712 (1268)
Q Consensus 697 ~l~~l~~e~~~le~~l 712 (1268)
.....++.+..++.++
T Consensus 54 r~~kdEE~~e~~e~qL 69 (205)
T KOG1003|consen 54 RAQKLEEKMEAQEAQL 69 (205)
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3333333333333333
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=98.06 E-value=0.00078 Score=71.83 Aligned_cols=53 Identities=13% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 658 KMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEA 710 (1268)
Q Consensus 658 ~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~ 710 (1268)
.....++.++..++.+...+..++.++..++.++..++.+++.+.+.++..+.
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333334444444444444444444444444444433333
No 138
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.02 E-value=0.0077 Score=65.01 Aligned_cols=89 Identities=20% Similarity=0.219 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 736 LHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLAT 815 (1268)
Q Consensus 736 l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~ 815 (1268)
+.++-.++..+..-+...+.-++....+...++.+...++.+++.+.....+++.....|+.+..+++.-+..+..+...
T Consensus 129 fsD~IsRvtAi~~iv~aDk~ile~qk~dk~~Le~kq~~l~~~~e~l~al~~e~e~~~~~L~~qk~e~~~l~~~~aa~~a~ 208 (265)
T COG3883 129 FSDLISRVTAISVIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEAS 208 (265)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666667766666667666666666666666666666666666666666655555
Q ss_pred HHHHHHHHH
Q 000820 816 LKSTLASRN 824 (1268)
Q Consensus 816 l~~el~~l~ 824 (1268)
+..+...+.
T Consensus 209 ~~~e~a~l~ 217 (265)
T COG3883 209 ALGEKAALE 217 (265)
T ss_pred hHHHHHHHH
Confidence 555555444
No 139
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.01 E-value=6.8e-08 Score=118.34 Aligned_cols=271 Identities=27% Similarity=0.290 Sum_probs=165.8
Q ss_pred HHHHHHhhhccccccccccceeeecccCCCccccccCCce-----EEEeCCCceeecc-CCCCCceeeEeccccCCCCCh
Q 000820 874 EEQILRKRYFNTIEDMKGKIRVYCRLRPLNEKEDAEKERY-----VLTSLDEFTVEHP-WKDDKVKQHMYDQVFDGYATQ 947 (1268)
Q Consensus 874 ~~~~~r~kl~~~i~~~k~~i~~~~RvRp~~~~e~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~~f~fd~vf~~~~~q 947 (1268)
+...+.+.|++.+.... +++|+|+|+|........-... .-..........+ ........|.||.+|......
T Consensus 289 ReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 367 (568)
T COG5059 289 RESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIE 367 (568)
T ss_pred hhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhh
Confidence 44567788888888888 9999999999874421110000 0000001111100 011224578899999999999
Q ss_pred hhHHhcHHHHHHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCC-ceEEEEEEEeeeecccc
Q 000820 948 EDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN-KFSFSLKAYMVELYQDT 1026 (1268)
Q Consensus 948 ~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~-~~~~~v~~s~~eiy~e~ 1026 (1268)
..++.....+++..++| +++||++++|+++||.- ...++..-.+...|..+..... .+.+...+-+.++|-..
T Consensus 368 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (568)
T COG5059 368 ILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKS--RIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDR 441 (568)
T ss_pred hHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccc--hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999888899999988 99999999999999942 2345555555777776654321 23344444455555222
Q ss_pred cccCCCCCcccccceEEEeCCCCcEEecCcEEEEcCCHHHHHHHHHhccccccccccCCCCCCCCcccEEEEEEEEeecC
Q 000820 1027 LVDLLLPRNEKRLKLEIKKDSKGMVLVENVTVVPISTFEEIKSIIQRGSDQRHTSGTQMNEESSRSHLILSIVIESTNLQ 1106 (1268)
Q Consensus 1027 v~DLL~~~~~~~~~~~i~~~~~~~~~v~~~~~~~v~s~~~~~~~l~~~~~~r~~~~t~~n~~ssrsH~i~~i~v~~~~~~ 1106 (1268)
..++.................-+......++... ....+..... .+...+..+.+..|..++++|.+|.......+..
T Consensus 442 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 519 (568)
T COG5059 442 LLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIP-EETSDRVESE-KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSS 519 (568)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcc-hhhhhhhhhh-hhccchhhcccchhhhhcccchhhhhcccchhhh
Confidence 2222211111000000000000000000111111 1111111222 5677788899999999999999998776543322
Q ss_pred CCceeEEEEEEEecCCCccccCCCCchhhHHHHHHHhHHHHHHHHHHHHhh
Q 000820 1107 TQSVARGKLSFVDLAGSERVKKSGSSGNQLKEAQSINKSLSALGDVISALS 1157 (1268)
Q Consensus 1107 ~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~al~ 1157 (1268)
..... ++.||+||+||. .+.+.|.++++..++|++|..++.++.++.
T Consensus 520 ~~~~~---~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~d~~~~~~ 566 (568)
T COG5059 520 TKELS---LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLGDVIHALG 566 (568)
T ss_pred hHHHH---hhhhhccccccc-hhhhhHHHHHhhHhhhhccccchhhhhhcc
Confidence 22221 799999999999 889999999999999999999999998764
No 140
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=97.97 E-value=0.002 Score=68.84 Aligned_cols=19 Identities=11% Similarity=0.011 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 000820 818 STLASRNMDLAGLESHLKE 836 (1268)
Q Consensus 818 ~el~~l~~~~~~l~~~~~~ 836 (1268)
.+......+...+...+..
T Consensus 156 e~~~~~~~~~~~L~~~l~~ 174 (239)
T COG1579 156 EEGQELSSKREELKEKLDP 174 (239)
T ss_pred HHHHHHHHHHHHHHHhcCH
Confidence 3333444444455555554
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=97.97 E-value=0.019 Score=73.02 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDL 666 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l 666 (1268)
+++++++++.++..+.+.+..++..++.++.+++.+++.+
T Consensus 210 ~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l 249 (650)
T TIGR03185 210 EIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESL 249 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333333333333333333333
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.94 E-value=0.093 Score=62.71 Aligned_cols=12 Identities=17% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHH
Q 000820 579 EEICVALQTHIN 590 (1268)
Q Consensus 579 ~eI~~li~~yi~ 590 (1268)
..+|.|+..+..
T Consensus 154 R~lCNlLKeT~~ 165 (786)
T PF05483_consen 154 RHLCNLLKETCQ 165 (786)
T ss_pred HHHHHHHHHHHH
Confidence 456666666554
No 143
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.94 E-value=0.013 Score=72.83 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDS 669 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~ 669 (1268)
.+..+-.++.++++...+++..+..-.+.+..++.++..++..++..++.
T Consensus 175 ~ll~~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 175 ELLQYHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777777777777777777777777777777777777666544
No 144
>PRK11281 hypothetical protein; Provisional
Probab=97.94 E-value=0.005 Score=80.59 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=14.3
Q ss_pred ceEEEEeCCCCCCHHHHHHHH-HHHHHhcccccCCC
Q 000820 1184 TLMFVNVSPAESNLEESYNSL-TYASRVRSIVNDPN 1218 (1268)
Q Consensus 1184 t~~i~~vsp~~~~~~et~~tL-~fa~r~~~i~~~~~ 1218 (1268)
..+-+.|+.. ++.+.....| +.|.....|...|.
T Consensus 996 v~i~vgV~Y~-sDi~~v~~iL~eaa~~~p~Vl~~P~ 1030 (1113)
T PRK11281 996 VVIKVGVAYG-SDLEKVRELLLQAATENPRVMKEPE 1030 (1113)
T ss_pred EEEEEEeCCC-CCHHHHHHHHHHHHHcCcccccCCC
Confidence 3333444332 3455544444 33334444444443
No 145
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.91 E-value=0.031 Score=69.41 Aligned_cols=54 Identities=24% Similarity=0.463 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQK 676 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~ 676 (1268)
..+..+.++++.+..+...+..+...+.++...-.+-+.++..++...+.++..
T Consensus 98 ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ 151 (560)
T PF06160_consen 98 KAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKE 151 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444443
No 146
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=97.90 E-value=0.075 Score=65.99 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRL 687 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l 687 (1268)
+..+|.+++.++..++..+.....+...+.....++..+.+.++.+...++.++.++...-.++
T Consensus 32 ~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rl 95 (717)
T PF09730_consen 32 LQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARL 95 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445554444444444444444444444444444444444444444444444333333333
No 147
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=97.87 E-value=0.0019 Score=64.21 Aligned_cols=34 Identities=9% Similarity=0.076 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 677 LAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEA 710 (1268)
Q Consensus 677 l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~ 710 (1268)
+..++.+....+.++..+...+..++.++..++.
T Consensus 23 ~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~ 56 (143)
T PF12718_consen 23 VKQLEQENEQKEQEITSLQKKNQQLEEELDKLEE 56 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 148
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.87 E-value=0.017 Score=63.74 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 649 LHERQRQEAKMQEELDDLKDSLRFEKQKL 677 (1268)
Q Consensus 649 l~~l~~e~~~l~~el~~l~~~l~~~~~~l 677 (1268)
-..+..+...+++++....+.+.+++.++
T Consensus 92 N~~L~~~~~~le~~L~~~~e~v~qLrHeL 120 (306)
T PF04849_consen 92 NQDLSERNEALEEQLGAALEQVEQLRHEL 120 (306)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444433
No 149
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.047 Score=66.87 Aligned_cols=100 Identities=18% Similarity=0.244 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 736 LHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLAT 815 (1268)
Q Consensus 736 l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~ 815 (1268)
....+.++..+-.++....+.--.+-.+.....+....+..+...+..++..+......+...+..++.+...+......
T Consensus 463 ~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~ 542 (698)
T KOG0978|consen 463 FEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESK 542 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh
Confidence 33333334444444433333333333333333334444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHhhH
Q 000820 816 LKSTLASRNMDLAGLESHLK 835 (1268)
Q Consensus 816 l~~el~~l~~~~~~l~~~~~ 835 (1268)
+..++..+...++.......
T Consensus 543 l~~el~~~~~~le~~kk~~~ 562 (698)
T KOG0978|consen 543 LIKELTTLTQSLEMLKKKAQ 562 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444443333
No 150
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.86 E-value=0.025 Score=77.39 Aligned_cols=90 Identities=14% Similarity=0.175 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLK--DSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVV 701 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~--~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l 701 (1268)
+..+|.+|+.++.++..++..+..++..+......+..+.+.+- ..+...-..+.....++.....++...+..+...
T Consensus 740 R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a 819 (1353)
T TIGR02680 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAESAERELARAARKAAAA 819 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666666666666666666666655554432 1222333333333444444444444444444444
Q ss_pred HHHHHHHHHHHH
Q 000820 702 LLEKRSMEAKMA 713 (1268)
Q Consensus 702 ~~e~~~le~~l~ 713 (1268)
.....+...++.
T Consensus 820 ~~~~~~a~~~l~ 831 (1353)
T TIGR02680 820 AAAWKQARRELE 831 (1353)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 151
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.85 E-value=0.078 Score=63.09 Aligned_cols=35 Identities=11% Similarity=0.263 Sum_probs=16.8
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 619 HSIELFEKRIQDLSKTVEESQRNADQLLEELHERQ 653 (1268)
Q Consensus 619 ~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~ 653 (1268)
..++.+++++++-..++...+.....-...+.+..
T Consensus 15 ~dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~t 49 (629)
T KOG0963|consen 15 FDLERLQRELDAEATEIAQRQDESEISRKRLAEET 49 (629)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhH
Confidence 34555555555555555544444444444443333
No 152
>PRK11281 hypothetical protein; Provisional
Probab=97.84 E-value=0.014 Score=76.61 Aligned_cols=37 Identities=14% Similarity=0.083 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000820 800 SELERKLGEATLDLATLKSTLASRNMDLAGLESHLKE 836 (1268)
Q Consensus 800 ~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~ 836 (1268)
.+...+++.+.++..+.++.++.+.+....++++++-
T Consensus 295 ~~~t~~~~~l~~~~~~~~~~l~~~~q~~~~i~eqi~~ 331 (1113)
T PRK11281 295 LKATEKLNTLTQQNLRVKNWLDRLTQSERNIKEQISV 331 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444433
No 153
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=97.83 E-value=0.016 Score=68.72 Aligned_cols=56 Identities=38% Similarity=0.472 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 000820 782 EILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELE 838 (1268)
Q Consensus 782 ~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~ 838 (1268)
+.....+..++..+..+|..++.++.....+++.++.++... ...++++.++..|+
T Consensus 302 ~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~-sDYeeIK~ELsiLk 357 (629)
T KOG0963|consen 302 ERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSR-SDYEEIKKELSILK 357 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHH
Confidence 334444555666666777777777777777777776666543 45556666665555
No 154
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=97.83 E-value=7.9e-05 Score=69.01 Aligned_cols=84 Identities=18% Similarity=0.235 Sum_probs=69.9
Q ss_pred ceEEEEecCCc----EEEEEeccccCHHHHHHHHHHHhCC-CCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHH
Q 000820 283 LTTIVFFLDET----FEEISYDMATTVSDAVEELAGIIKL-SAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGD 357 (1268)
Q Consensus 283 ~~~~V~l~dg~----~~~v~vd~~tTv~ev~~~l~~~lgL-~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D 357 (1268)
-.++||..+++ +++|.|++.||+.||+..++.++++ .+...|+||++. ..+...+.|.++++.++
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~~~~----------~~~~~er~L~~~E~pl~ 72 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLVEVE----------ESGGEERPLDDDECPLQ 72 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEEEEE----------CTTTEEEEETTTSBHHH
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEEEEE----------cCCCEEEEcCCCCchHH
Confidence 46899999999 9999999999999999999999999 688899997422 44666778999999999
Q ss_pred HHHHHHHhhhcCCCceeeEEEEEEee
Q 000820 358 LLAEFKAAKDRSKGEILHCKLTFKKK 383 (1268)
Q Consensus 358 ~l~~~e~~~~~~~~~~~~~~l~fk~~ 383 (1268)
+...|.... ...+|+||++
T Consensus 73 i~~~~~~~~-------~~~~f~lr~~ 91 (93)
T PF00788_consen 73 IQLQWPKDS-------QNSRFVLRRK 91 (93)
T ss_dssp HHHTTSSGT-------TTEEEEEEEC
T ss_pred HHHhCcccc-------CceEEEEEEc
Confidence 999885432 2367888875
No 155
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.013 Score=73.06 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=10.8
Q ss_pred cceEEEeecccCCCcccccccCCC
Q 000820 965 YNVCIFAYGQTGSGKTFTIYGSEC 988 (1268)
Q Consensus 965 ~n~~i~ayG~tgsGKT~t~~G~~~ 988 (1268)
.++-+.|.-.|-=-|+-+|.|+..
T Consensus 622 ~r~k~valdGtl~~ksGlmsGG~s 645 (1141)
T KOG0018|consen 622 IRFKVVALDGTLIHKSGLMSGGSS 645 (1141)
T ss_pred ccceEEEeeeeEEeccceecCCcc
Confidence 334444444433333446666543
No 156
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.76 E-value=0.017 Score=75.54 Aligned_cols=11 Identities=27% Similarity=0.443 Sum_probs=4.8
Q ss_pred HHHHHhcccce
Q 000820 957 LVQSAVDGYNV 967 (1268)
Q Consensus 957 ~v~~~~~G~n~ 967 (1268)
+++.+++|++.
T Consensus 391 LL~~L~~~~~~ 401 (1109)
T PRK10929 391 LLNSLLSGGDT 401 (1109)
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 157
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=97.75 E-value=0.035 Score=75.97 Aligned_cols=103 Identities=12% Similarity=0.051 Sum_probs=54.0
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Q 000820 616 VKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQ--KLAEVMADHDRLKSLCDE 693 (1268)
Q Consensus 616 ~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~--~l~~l~~e~~~l~~e~~~ 693 (1268)
+..+.+.....+-..=...+.++...+.++..++..+..++..+...+..+.......-. .+...-..+......+..
T Consensus 725 k~~a~~IG~~aR~~~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps~~dL~~A~~~l~~A~~~~~~ 804 (1353)
T TIGR02680 725 KPAAEYIGAAARERARLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAERQAES 804 (1353)
T ss_pred CcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 444555555555444455555555555555555555555555555555555444443322 233334445555555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 694 KDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 694 le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
...++..+..+..............
T Consensus 805 a~~~l~~a~~~l~~a~~~~~~a~~~ 829 (1353)
T TIGR02680 805 AERELARAARKAAAAAAAWKQARRE 829 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555555554444
No 158
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.74 E-value=0.018 Score=60.44 Aligned_cols=80 Identities=15% Similarity=0.158 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 626 KRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEK 705 (1268)
Q Consensus 626 ~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~ 705 (1268)
.++.+|..++.+++.+++++..+..-++.-.......+..++..-.++-+-+.....++..+...+...+.....+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~kl 91 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKL 91 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555544444444444444333333333333333333333333333333333333333
No 159
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.74 E-value=0.022 Score=63.62 Aligned_cols=199 Identities=14% Similarity=0.156 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLK-------DSLRFEKQKLAEVMADHDRLKSLCDEKD 695 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~-------~~l~~~~~~l~~l~~e~~~l~~e~~~le 695 (1268)
-+.++++..+.+.++...-.+.++.+...++....++..+..... ..-..+...+.+...+...+..+++.+.
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444443331111000 1222333444555555555555555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhHH--HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 696 TSLQVVLLEKRSMEAKMAKLGNQESENNA--EKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISK 773 (1268)
Q Consensus 696 ~~l~~l~~e~~~le~~l~~l~~~~~~~~~--~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~ 773 (1268)
+.+.+++.+++-|...+.+.+........ ...+.+.+-.++..++.++..++.++....++.+++..+.+.++.+..+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~R 172 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHR 172 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655555555554433211111 1145555567778888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 774 LEKKTEEMEIL-------EKSFEQERKALKLQVSELERKLGEATLDLATLKSTLA 821 (1268)
Q Consensus 774 le~~~~el~~~-------~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~ 821 (1268)
+..++..+-.- ++.+=.|..-+++++..++++..-+...+.+.+.-++
T Consensus 173 LN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le 227 (319)
T PF09789_consen 173 LNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALE 227 (319)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877554322 4444445555556666666666666666665555544
No 160
>cd01203 DOK_PTB Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. Downstream of tyrosine kinase (DOK) Phosphotyrosine-binding domain. This domain has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules The DOK family of eukaryotic signaling molecules have an N-terminal PH domain, followed by an IRS-like PTB domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.72 E-value=0.00018 Score=65.31 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=65.5
Q ss_pred CCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCe----eeEEEEEcCcHHHHHHHHHHHHH
Q 000820 515 LLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGV----LHIFQFETKQGEEICVALQTHIN 590 (1268)
Q Consensus 515 ~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~----~~~~~feT~q~~eI~~li~~yi~ 590 (1268)
.+++..+|-|....+.+.++.+.+++..|||.-|..|+...+ .|.+..+.. +..|.|.|.+|.+|.+++...|+
T Consensus 18 ~L~G~y~L~v~~~~l~L~d~~~~~~l~~WP~~~LRryG~d~~--~FsFEAGRrC~tGeG~f~F~t~~~~~if~~v~~~i~ 95 (104)
T cd01203 18 CLPGSYMLRMGPTELQLKSEDLGATLYMWPYRFLRKYGRDKG--KFSFEAGRRCTSGEGVFTFDTTQGNEIFRAVEAAIK 95 (104)
T ss_pred CCceeEEEEEcCCEEEEEcCCCCcEEEEeehHhhhhhcccCC--EEEEEecCcCCCCCcEEEEecCCHHHHHHHHHHHHH
Confidence 378999999999999999999999999999999999999888 445554433 57899999999999999999998
No 161
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.70 E-value=7.9e-06 Score=105.35 Aligned_cols=232 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHH
Q 000820 658 KMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLH 737 (1268)
Q Consensus 658 ~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~ 737 (1268)
++..+++.++.....+......+..++..+...++.+......++...+.++.++..++....+.......+. ....
T Consensus 135 eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~---~~k~ 211 (859)
T PF01576_consen 135 ELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELT---EQKA 211 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3333333333333333333333344444444444444333333333344444444444333222222222222 3334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 738 ELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLK 817 (1268)
Q Consensus 738 ~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~ 817 (1268)
.+..++..+...+...+..+..+......+..++.++...+.+-......+...+..++.++..+...++.-......+.
T Consensus 212 kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~ 291 (859)
T PF01576_consen 212 KLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELE 291 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 44444444444444444444444444444444444444444333333334444444444444444443333333333333
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccccce
Q 000820 818 STLASRNMDLAGLESHLKELEELREMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIR 894 (1268)
Q Consensus 818 ~el~~l~~~~~~l~~~~~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~ 894 (1268)
..+..+..++..+...+.. ......+.+.+...++...+..+...+.........+...+.+|..+++|+...+.
T Consensus 292 ~qlsk~~~El~~~k~K~e~--e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe 366 (859)
T PF01576_consen 292 RQLSKLNAELEQWKKKYEE--EAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELE 366 (859)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333332222 11222334455555555666666666666666666677777777777777665443
No 162
>PRK09039 hypothetical protein; Validated
Probab=97.70 E-value=0.0081 Score=69.38 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 740 QRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 740 ~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
..++...+........++..|+.+++.++.+++.++..+
T Consensus 122 ~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L 160 (343)
T PRK09039 122 AQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAAL 160 (343)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444444433333333
No 163
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=0.043 Score=68.42 Aligned_cols=44 Identities=16% Similarity=0.311 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 645 LLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLK 688 (1268)
Q Consensus 645 l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~ 688 (1268)
.-.+|.+++....+++..+..-...+..++++++.++.+++...
T Consensus 179 ~h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r 222 (1072)
T KOG0979|consen 179 YHIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR 222 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555445555555555554444444443
No 164
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.66 E-value=0.033 Score=69.13 Aligned_cols=85 Identities=20% Similarity=0.256 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
...++..+++.+.+....+..+ ++...+.....+..+++.+-+.++..-.-..........+...+..+......+..
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~ 327 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKE 327 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555443 24444555555555555555555444444444444444444444444444444444
Q ss_pred HHHHHHH
Q 000820 704 EKRSMEA 710 (1268)
Q Consensus 704 e~~~le~ 710 (1268)
++..+..
T Consensus 328 e~~~v~~ 334 (560)
T PF06160_consen 328 ELERVSQ 334 (560)
T ss_pred HHHHHHH
Confidence 4444443
No 165
>PRK09039 hypothetical protein; Validated
Probab=97.66 E-value=0.008 Score=69.43 Aligned_cols=8 Identities=25% Similarity=0.306 Sum_probs=3.0
Q ss_pred EEeecccC
Q 000820 969 IFAYGQTG 976 (1268)
Q Consensus 969 i~ayG~tg 976 (1268)
|..-|.|.
T Consensus 265 I~I~GHTD 272 (343)
T PRK09039 265 LRVDGHTD 272 (343)
T ss_pred EEEEEecC
Confidence 33334333
No 166
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.25 Score=60.70 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=10.3
Q ss_pred HHHHHHHhcccceEEEeeccc
Q 000820 955 RYLVQSAVDGYNVCIFAYGQT 975 (1268)
Q Consensus 955 ~~~v~~~~~G~n~~i~ayG~t 975 (1268)
++.+..=-.-+..|=-|||+.
T Consensus 671 q~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 671 QTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred HHHHHHhcCCCCCCCCCCCcc
Confidence 444444344555555555554
No 167
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=97.63 E-value=0.058 Score=70.73 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=22.9
Q ss_pred ccceEEEEeCCCCCCHHHHHHHH-HHHHHhcccccCCCC
Q 000820 1182 AKTLMFVNVSPAESNLEESYNSL-TYASRVRSIVNDPNK 1219 (1268)
Q Consensus 1182 ~~t~~i~~vsp~~~~~~et~~tL-~fa~r~~~i~~~~~~ 1219 (1268)
.+..+.+.|+.. ++.+.....| +.|.....|...|..
T Consensus 991 ~Rv~i~VgV~Y~-sDie~v~~iL~eaa~~~~~VL~~P~P 1028 (1109)
T PRK10929 991 TRVVLTIPAPAD-ANSEEVTEILLTAARRCSLVLDNPAP 1028 (1109)
T ss_pred eEEEEEEEeCCC-CCHHHHHHHHHHHHHhCccccCCCCC
Confidence 355566666654 4677777766 456666777666643
No 168
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.63 E-value=1.2e-05 Score=103.85 Aligned_cols=24 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHhhhccccccccccceeeec
Q 000820 875 EQILRKRYFNTIEDMKGKIRVYCR 898 (1268)
Q Consensus 875 ~~~~r~kl~~~i~~~k~~i~~~~R 898 (1268)
+...+++|+..|.++...+....|
T Consensus 544 ~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 544 ALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345555666666666544444443
No 169
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=97.61 E-value=0.22 Score=56.67 Aligned_cols=44 Identities=20% Similarity=0.357 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDD 665 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~ 665 (1268)
..+.+++.++..+...+.+++..++.....+..+...+..++..
T Consensus 25 ~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k 68 (309)
T PF09728_consen 25 EALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSK 68 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444444444443
No 170
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.59 E-value=0.07 Score=61.60 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 619 HSIELFEKRIQDLSKTVEESQRNADQLLEELH 650 (1268)
Q Consensus 619 ~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~ 650 (1268)
+-++.|+--.++|.+.+.+.++.+.+++.+..
T Consensus 68 P~Lely~~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 68 PMLELYQFSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777788888888777777777766553
No 171
>cd00824 PTBI IRS-like phosphotyrosine-binding domain. IRS-like phosphotyrosine-binding domain (PTBi); This domain has a PH-like fold and is found in insulin receptor substrate molecules and in other eukaryotic signaling molecules such as FRS2 and Dok. IRS and Dok molecules have an N-terminal PH domain, which is followed by an IRS-like PTB domain. FRS2 just has an N-terminal PTBi domain. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.59 E-value=0.00059 Score=63.24 Aligned_cols=80 Identities=20% Similarity=0.257 Sum_probs=68.6
Q ss_pred CCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCe----eeEEEEEcCcHHHHHHHHHHHH
Q 000820 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGV----LHIFQFETKQGEEICVALQTHI 589 (1268)
Q Consensus 514 ~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~----~~~~~feT~q~~eI~~li~~yi 589 (1268)
+...+..+|-+....+.+.++.+...+..|||..|..||...+ .|.+..+-. +..|.|+|+++.+|.+.|..+|
T Consensus 17 ~~~~G~y~L~lt~~~l~L~~~~~~~~~~~wpl~~lRRyG~~~~--~FsfEaGRrc~tG~G~f~f~t~~~~~I~~~v~~~i 94 (104)
T cd00824 17 GNELGSYRLCLTSKELTLVKLGSRVALVVWPLMFLRRYGYDSN--LFSFEAGRRCVTGEGIFTFQTDRAEEIFQNVHETI 94 (104)
T ss_pred CCCceeEEEEECCCEEEEEecCCCceEEEeehHHeeecccCCC--EEEEEccCcCCCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 3357889999999999999999999999999999999999998 555555433 4689999999999999999999
Q ss_pred HHHHHH
Q 000820 590 NDVMLR 595 (1268)
Q Consensus 590 ~~~~~~ 595 (1268)
...+.+
T Consensus 95 ~~~~~~ 100 (104)
T cd00824 95 LAAMKA 100 (104)
T ss_pred HHHHHh
Confidence 966544
No 172
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.59 E-value=0.13 Score=58.37 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=23.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELH 650 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~ 650 (1268)
-++.|+-..++|.+.+.+-+.-+.+++++..
T Consensus 64 ~LElY~~sC~EL~~~I~egr~~~~~~E~et~ 94 (312)
T smart00787 64 LLELYQFSCKELKKYISEGRDLFKEIEEETL 94 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577777888888888888877777776654
No 173
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=97.57 E-value=0.061 Score=62.09 Aligned_cols=7 Identities=29% Similarity=1.042 Sum_probs=3.7
Q ss_pred CceEEEC
Q 000820 527 RGVHFFR 533 (1268)
Q Consensus 527 ~GI~il~ 533 (1268)
-||+|++
T Consensus 23 ~~I~F~d 29 (325)
T PF08317_consen 23 TGIRFYD 29 (325)
T ss_pred hCceeCC
Confidence 4556644
No 174
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.57 E-value=0.19 Score=54.81 Aligned_cols=8 Identities=25% Similarity=0.414 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 000820 797 LQVSELER 804 (1268)
Q Consensus 797 ~~i~~l~~ 804 (1268)
.++.+++.
T Consensus 221 ERL~Qlqs 228 (305)
T PF14915_consen 221 ERLSQLQS 228 (305)
T ss_pred HHHHHHHH
Confidence 33333333
No 175
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=97.57 E-value=0.042 Score=57.66 Aligned_cols=82 Identities=11% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
++.++.+++..++++..+...++.-.......+...+..-.++-.-+.....++..+...+.........++..+.....
T Consensus 17 L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~ 96 (194)
T PF15619_consen 17 LQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDE 96 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444333333333333333333333333333333333333333333333333333333333333333333
Q ss_pred HH
Q 000820 704 EK 705 (1268)
Q Consensus 704 e~ 705 (1268)
++
T Consensus 97 el 98 (194)
T PF15619_consen 97 EL 98 (194)
T ss_pred HH
Confidence 33
No 176
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=97.57 E-value=0.029 Score=69.46 Aligned_cols=28 Identities=18% Similarity=0.119 Sum_probs=19.6
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHHHHHH
Q 000820 569 HIFQFETKQGEEICVALQTHINDVMLRR 596 (1268)
Q Consensus 569 ~~~~feT~q~~eI~~li~~yi~~~~~~r 596 (1268)
-.+.|..+.+.....+.+.+++.++...
T Consensus 124 i~Is~~~~dP~~Aa~i~n~l~~~yi~~~ 151 (498)
T TIGR03007 124 FTISYEDKDPELAKDVVQTLLTIFVEET 151 (498)
T ss_pred EEEEeeCCCHHHHHHHHHHHHHHHHHhh
Confidence 4577888888887777777776554443
No 177
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=97.56 E-value=0.06 Score=59.53 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 000820 629 QDLSKTVEESQR 640 (1268)
Q Consensus 629 ~eL~~~l~e~~~ 640 (1268)
+.+..-+++..+
T Consensus 65 davt~lLeEker 76 (306)
T PF04849_consen 65 DAVTRLLEEKER 76 (306)
T ss_pred HHHHHHHHHHhh
Confidence 333333333333
No 178
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.56 E-value=0.14 Score=58.58 Aligned_cols=8 Identities=13% Similarity=-0.238 Sum_probs=3.9
Q ss_pred CCCCCCCC
Q 000820 605 TGSVNGDL 612 (1268)
Q Consensus 605 ~gs~tGG~ 612 (1268)
|-+..||+
T Consensus 282 gis~~~~a 289 (527)
T PF15066_consen 282 GISWSSGA 289 (527)
T ss_pred cccccccc
Confidence 33355555
No 179
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=97.54 E-value=0.00048 Score=62.83 Aligned_cols=81 Identities=16% Similarity=0.132 Sum_probs=64.9
Q ss_pred EEEEecC---CcEEEEEeccccCHHHHHHHHHHHhCCC-CCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHH
Q 000820 285 TIVFFLD---ETFEEISYDMATTVSDAVEELAGIIKLS-AHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLA 360 (1268)
Q Consensus 285 ~~V~l~d---g~~~~v~vd~~tTv~ev~~~l~~~lgL~-~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~ 360 (1268)
++||..| +++++|.+.+.+|+.||+..++.+.++. +...|+||++. .++...+.|.+++..+.+..
T Consensus 2 ikV~~~~~~~~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~----------~~~~~er~L~~~e~pl~~~~ 71 (87)
T cd01768 2 LRVYPEDPSGGTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVL----------GDGGLERLLLPDECPLQIQL 71 (87)
T ss_pred EEEeCCcCCCccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEE----------CCceEEEEeCCCCChHHHHH
Confidence 6788888 9999999999999999999999999999 88899999854 12246678999999999886
Q ss_pred HHHHhhhcCCCceeeEEEEEEe
Q 000820 361 EFKAAKDRSKGEILHCKLTFKK 382 (1268)
Q Consensus 361 ~~e~~~~~~~~~~~~~~l~fk~ 382 (1268)
.|... .....|++|+
T Consensus 72 ~~~~~-------~~~~~F~lr~ 86 (87)
T cd01768 72 NAPRQ-------REDLRFLLRK 86 (87)
T ss_pred hcCCC-------CCcEEEEEec
Confidence 65421 1235577665
No 180
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.53 E-value=0.25 Score=65.64 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=3.8
Q ss_pred HHHHHhccc
Q 000820 957 LVQSAVDGY 965 (1268)
Q Consensus 957 ~v~~~~~G~ 965 (1268)
.+..++.|.
T Consensus 831 ALs~~~~~~ 839 (908)
T COG0419 831 ALSDLLQGR 839 (908)
T ss_pred HHHHHHhcc
Confidence 344444333
No 181
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.48 E-value=0.42 Score=63.60 Aligned_cols=13 Identities=23% Similarity=0.473 Sum_probs=5.7
Q ss_pred HHHHHHHHHhCCC
Q 000820 307 DAVEELAGIIKLS 319 (1268)
Q Consensus 307 ev~~~l~~~lgL~ 319 (1268)
++-+.|-..+|+.
T Consensus 118 ~v~~~i~~llgld 130 (908)
T COG0419 118 DVNEKIEELLGLD 130 (908)
T ss_pred hHHHHHHHHhCCC
Confidence 3444444444443
No 182
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=97.47 E-value=0.29 Score=57.44 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLK 667 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~ 667 (1268)
....+++.|..++.+....+..+. +.+.+.++..++++++.+-
T Consensus 252 ~id~~~~~L~~~l~~~~~~l~~Le--ld~aeeel~~I~e~ie~lY 294 (570)
T COG4477 252 NIDSRLERLKEQLVENSELLTQLE--LDEAEEELGLIQEKIESLY 294 (570)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHhh--hhhHHHHHHHHHHHHHHHH
Confidence 344555555555554444443332 3333444444444444333
No 183
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain []. This entry, however, represents the PH-like domain found at the C terminus of the eukaryote proteins moesin, ezrin and radixin.; PDB: 1NI2_B 3U8Z_B 1H4R_B 1ISN_A 3QIJ_B 1GG3_A 2HE7_A 3BIN_A 2I1J_A 2I1K_A ....
Probab=97.46 E-value=0.00051 Score=63.08 Aligned_cols=75 Identities=12% Similarity=0.150 Sum_probs=56.2
Q ss_pred ceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCeeeEEEEEcCcHHHHHHHHHHHHHHH
Q 000820 518 GRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDV 592 (1268)
Q Consensus 518 ~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~~~~~~feT~q~~eI~~li~~yi~~~ 592 (1268)
.+++|||+..||.+++...+..+..|+|.+|.+..+..+.|.+.+.......++.|.++.......|+...+..+
T Consensus 5 ~~~~LGv~~~GI~i~~~~~~~~~~~f~W~~I~~l~~~~k~F~I~~~~~~~~~~~~f~~~~~~~aK~lw~~cv~~H 79 (90)
T PF09380_consen 5 SPLWLGVSPRGISIYRDNNRISTQFFPWSEISKLSFKKKKFTIEVRDESKEIKLKFYTPSPKAAKYLWKLCVEQH 79 (90)
T ss_dssp BEEEEEEESSEEEEEETTBSSSSEEEEGGGEEEEEEETTEEEEEESSTSSSEEEEEE-SSHHHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCEeEEEeCCCcccceeeehhheeEEEecccEEEEEEeecccceEEEEEECCHHHHHHHHHHHHHHH
Confidence 479999999999999886654468999999999999999666555543446778888887666666665555433
No 184
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.45 E-value=0.31 Score=54.57 Aligned_cols=95 Identities=9% Similarity=0.205 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVL 702 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~ 702 (1268)
.+...++++..++......+...+..+..++.++..+..+.+.+..+.......-..+............++...+..+.
T Consensus 21 ~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~ 100 (264)
T PF06008_consen 21 KLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQ 100 (264)
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhhc
Q 000820 703 LEKRSMEAKMAKLGN 717 (1268)
Q Consensus 703 ~e~~~le~~l~~l~~ 717 (1268)
..+..+-.++..+..
T Consensus 101 ~~i~~l~~~~~~l~~ 115 (264)
T PF06008_consen 101 DNIQELIEQVESLNE 115 (264)
T ss_pred HHHHHHHHHHHHhCc
Confidence 777776666665554
No 185
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=97.45 E-value=0.00039 Score=63.89 Aligned_cols=83 Identities=17% Similarity=0.218 Sum_probs=67.4
Q ss_pred ceEEEEecC---CcEEEEEeccccCHHHHHHHHHHHhCCCC-CCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHH
Q 000820 283 LTTIVFFLD---ETFEEISYDMATTVSDAVEELAGIIKLSA-HSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDL 358 (1268)
Q Consensus 283 ~~~~V~l~d---g~~~~v~vd~~tTv~ev~~~l~~~lgL~~-~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~ 358 (1268)
..++||.-+ ++++++.+.+.+|+.||+..++.+.++.+ ...|+||++. .+...+.|.++++.+.+
T Consensus 3 ~~lrV~~~~~~~~~~kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~e~~-----------~~~~er~L~~~e~Pl~~ 71 (90)
T smart00314 3 FVLRVYVDDLPGGTYKTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLVEVL-----------PDGKERVLPDDENPLQL 71 (90)
T ss_pred eEEEEecccCCCCcEEEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEEEEe-----------CCcEEEEeCCCCcceEe
Confidence 467888888 99999999999999999999999999986 7899999843 14456789999999999
Q ss_pred HHHHHHhhhcCCCceeeEEEEEEee
Q 000820 359 LAEFKAAKDRSKGEILHCKLTFKKK 383 (1268)
Q Consensus 359 l~~~e~~~~~~~~~~~~~~l~fk~~ 383 (1268)
+..|... ....+|++|++
T Consensus 72 ~~~~~~~-------~~~~~f~lr~~ 89 (90)
T smart00314 72 QKLWPRR-------GPNLRFVLRKR 89 (90)
T ss_pred hhhCCCC-------CCcEEEEEEeC
Confidence 9888321 12466777764
No 186
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.39 E-value=0.51 Score=61.65 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=9.1
Q ss_pred cccceEEEeecc
Q 000820 963 DGYNVCIFAYGQ 974 (1268)
Q Consensus 963 ~G~n~~i~ayG~ 974 (1268)
=|.||.|+|.--
T Consensus 1204 f~snCgvLALDE 1215 (1294)
T KOG0962|consen 1204 FGSNCGVLALDE 1215 (1294)
T ss_pred HhhccccccccC
Confidence 388888888763
No 187
>PF13514 AAA_27: AAA domain
Probab=97.39 E-value=0.53 Score=64.07 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=10.2
Q ss_pred ccCCCchhHHHHHHHHH
Q 000820 128 LLKLNSDLVSRATKLFQ 144 (1268)
Q Consensus 128 Ll~~~~~~~~~A~~~F~ 144 (1268)
|..+-..+.+.|-++|+
T Consensus 128 l~~~~~~L~~ea~~Lfk 144 (1111)
T PF13514_consen 128 LSQVLKQLDKEADELFK 144 (1111)
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 44445566666666665
No 188
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=97.37 E-value=0.24 Score=55.45 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 642 ADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVV 701 (1268)
Q Consensus 642 l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l 701 (1268)
++.++.++..+..+...+..+..........+....+.....-..+...+..+...+..+
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l 106 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQEL 106 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333333333333333333333
No 189
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.35 E-value=0.27 Score=64.01 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=10.2
Q ss_pred CCcHHHHHHHHHHHHh
Q 000820 991 GITPRAISELFRILKK 1006 (1268)
Q Consensus 991 Gli~r~~~~lf~~~~~ 1006 (1268)
|-|-+++.+|+....+
T Consensus 1127 eeiN~iI~elW~~tYr 1142 (1294)
T KOG0962|consen 1127 EEINRIIRELWRKTYR 1142 (1294)
T ss_pred HHHHHHHHHHHHhccC
Confidence 5566677777765544
No 190
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=97.35 E-value=0.21 Score=57.10 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
..++.|+.-++..+..+...+.+.+.|+-++...+.....|+++.
T Consensus 390 k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 390 KTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 445555555555555555555555555556555555555555555
No 191
>PF13514 AAA_27: AAA domain
Probab=97.34 E-value=0.7 Score=62.90 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=10.0
Q ss_pred CCCChhhHHhcHHH-HHHHH
Q 000820 943 GYATQEDVFEDTRY-LVQSA 961 (1268)
Q Consensus 943 ~~~~q~~v~~~~~~-~v~~~ 961 (1268)
+..|.+++|=.++= +++.+
T Consensus 1027 S~GT~dQLYLALRLA~~e~~ 1046 (1111)
T PF13514_consen 1027 SRGTRDQLYLALRLALAELL 1046 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34566667765532 44443
No 192
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=97.33 E-value=0.052 Score=70.77 Aligned_cols=27 Identities=4% Similarity=0.019 Sum_probs=18.4
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHHHHH
Q 000820 569 HIFQFETKQGEEICVALQTHINDVMLR 595 (1268)
Q Consensus 569 ~~~~feT~q~~eI~~li~~yi~~~~~~ 595 (1268)
-.+.|+.+....-..+.+.+++.++..
T Consensus 157 i~Is~~~~dP~~Aa~iaN~la~~Y~~~ 183 (754)
T TIGR01005 157 IAIEFRSEDPKLAAAIPDAIAAAYIAG 183 (754)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHHH
Confidence 357788888777777777777655443
No 193
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.32 E-value=0.26 Score=57.40 Aligned_cols=42 Identities=26% Similarity=0.215 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLE 775 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le 775 (1268)
.+...++.++.....+...+-+-+.+.+++..+-..++++++
T Consensus 428 ~e~~~y~de~~kaqaevdrlLeilkeveneKnDkdkkiaele 469 (654)
T KOG4809|consen 428 KEASYYRDECGKAQAEVDRLLEILKEVENEKNDKDKKIAELE 469 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcC
Confidence 333333433333333333333333333333333333344443
No 194
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.31 E-value=0.051 Score=53.34 Aligned_cols=85 Identities=18% Similarity=0.254 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 630 DLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 630 eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
....++.+.+.+.+.++..+..++.++...+.+...+....+..+..+..++.++..+...+..+..++..+..+...+.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555555555555555454444444444555555555555544444444444444444444
Q ss_pred HHHHH
Q 000820 710 AKMAK 714 (1268)
Q Consensus 710 ~~l~~ 714 (1268)
..+.+
T Consensus 87 k~lq~ 91 (140)
T PF10473_consen 87 KELQK 91 (140)
T ss_pred HHHHH
Confidence 44433
No 195
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain. These domains facilitate interaction with the activated tyrosine-phosphorylated insulin receptor. The PTB domain is situated towards the N terminus. Two arginines in this domain are responsible for hydrogen bonding phosphotyrosine residues on a Ac-LYASSNPApY-NH2 peptide in the juxtamembrane region of the insulin receptor. Further interactions via `bridged' water molecules are coordinated by residues an Asn and a Ser residue []. The PTB domain has a compact, 7-stranded beta-sandwich structure, capped by a C-terminal helix. The substrate peptide fits into an L-shaped surface cleft formed from the C-terminal helix and strands 5 and 6 [].; GO: 0005158 insulin receptor binding; PDB: 1XR0_B 1QQG_B 1IRS_A 2V76_D 1MK7_B 2K00_A 1MIZ_B 1MK9_B 1MIX_A 2H7E_A ....
Probab=97.31 E-value=0.00088 Score=62.52 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=65.5
Q ss_pred CCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcC----eeeEEEEEcCcHHHHHHHHHHHHHH
Q 000820 516 LPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAG----VLHIFQFETKQGEEICVALQTHIND 591 (1268)
Q Consensus 516 ~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~----~~~~~~feT~q~~eI~~li~~yi~~ 591 (1268)
+.+..+|-|....|.+.++.++..+..|||..|..|+...+ .|.+..|. ++..|.|.|++|.+|..+|..+|+.
T Consensus 20 l~g~~~L~l~~~~l~L~~~~~~~~~~~Wpl~~lRryG~~~~--~F~fEaGRrc~tG~G~f~f~t~~a~~I~~~v~~~i~~ 97 (100)
T PF02174_consen 20 LSGPYLLCLTPDELILIDPQSGEPILEWPLRYLRRYGRDDG--IFSFEAGRRCPTGEGLFWFQTPDAEEIFETVERAIKA 97 (100)
T ss_dssp SEEEEEEEEESSEEEEEETTTTEEEEEEEGGGEEEEEEETT--EEEEEESTTSTTCSEEEEEEESTHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCEEEEecCCCCceEEEEEhHHhhhhccCCC--EEEEEECCcCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999888 55555553 2578999999999999999999983
No 196
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=97.29 E-value=0.39 Score=52.16 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhch
Q 000820 697 SLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 697 ~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
.+..++.++..+++++.+.+.+
T Consensus 82 ~l~~Lq~ql~~l~akI~k~~~e 103 (258)
T PF15397_consen 82 KLSKLQQQLEQLDAKIQKTQEE 103 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 197
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=97.29 E-value=0.07 Score=52.37 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHH
Q 000820 772 SKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEEL-REMKEDIDRK 850 (1268)
Q Consensus 772 ~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el-~~~~~~l~~~ 850 (1268)
+..+.....+....+....++..++.++..+...+..+..++..+..+...+...+...+.++.+|+.. .....-+...
T Consensus 34 e~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~ 113 (140)
T PF10473_consen 34 EMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEK 113 (140)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333333333333334444444445555555555555555555555555555555555555555555522 3334444444
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 851 NEQTAAILKMQGAQLSELE 869 (1268)
Q Consensus 851 ~~~~~~~~~~~~~~~~~L~ 869 (1268)
+................|.
T Consensus 114 E~ek~q~~e~~~~~ve~L~ 132 (140)
T PF10473_consen 114 EQEKVQLKEESKSAVEMLQ 132 (140)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333
No 198
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.53 Score=54.99 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEEL 663 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el 663 (1268)
.-.+.++--+...+.+.+..++.....+......+.++.+.+
T Consensus 239 ~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmL 280 (654)
T KOG4809|consen 239 LTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEML 280 (654)
T ss_pred hhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 333444444444444555555555555554444444444433
No 199
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=97.26 E-value=0.3 Score=55.44 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=6.2
Q ss_pred cCceEEECCCc
Q 000820 526 KRGVHFFRPVP 536 (1268)
Q Consensus 526 ~~GI~il~~~~ 536 (1268)
--||+|++.-+
T Consensus 18 ~t~I~Fmdd~t 28 (312)
T smart00787 18 MTGIRFMELLT 28 (312)
T ss_pred HcCceeecccc
Confidence 34677766533
No 200
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.25 E-value=0.04 Score=66.71 Aligned_cols=19 Identities=16% Similarity=0.171 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 625 EKRIQDLSKTVEESQRNAD 643 (1268)
Q Consensus 625 k~~l~eL~~~l~e~~~~l~ 643 (1268)
+.++..++.++..++.++.
T Consensus 80 ~~~l~~l~~~~~~l~a~~~ 98 (423)
T TIGR01843 80 EADAAELESQVLRLEAEVA 98 (423)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 201
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.22 E-value=0.93 Score=55.01 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=8.6
Q ss_pred HHHHHhHHHHHHHHHHHH
Q 000820 1138 EAQSINKSLSALGDVISA 1155 (1268)
Q Consensus 1138 e~~~in~sl~~L~~vi~a 1155 (1268)
|....|+-..-|..|+.+
T Consensus 608 ev~s~ekr~~rlk~vF~~ 625 (716)
T KOG4593|consen 608 EVESAEKRNQRLKEVFAS 625 (716)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444445544555544443
No 202
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.20 E-value=0.042 Score=65.51 Aligned_cols=48 Identities=15% Similarity=0.277 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 626 KRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFE 673 (1268)
Q Consensus 626 ~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~ 673 (1268)
..+.++..+..........++........+....+..+..++..+...
T Consensus 35 ~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rflna 82 (916)
T KOG0249|consen 35 HSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRFLNA 82 (916)
T ss_pred hhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHHHhc
Confidence 334444444444444444455555555555555555554444444333
No 203
>smart00310 PTBI Phosphotyrosine-binding domain (IRS1-like).
Probab=97.19 E-value=0.0026 Score=58.11 Aligned_cols=73 Identities=19% Similarity=0.294 Sum_probs=63.7
Q ss_pred CceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCe----eeEEEEEcCcHHHHHHHHHHHHHH
Q 000820 517 PGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGV----LHIFQFETKQGEEICVALQTHIND 591 (1268)
Q Consensus 517 p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~----~~~~~feT~q~~eI~~li~~yi~~ 591 (1268)
.+..+|-+.+..|.+.+.+++..+..|||..|..||...+ +|.+..+-. +..|.|+|.+|.+|..+|..+|..
T Consensus 19 ~G~y~L~lt~~~L~L~~~~~~~~~~~wpl~~lRRyG~~~~--~FsfEaGRrc~tG~G~f~f~t~~a~~i~~~v~~a~~~ 95 (98)
T smart00310 19 SGSYRLRLTSETLVLWRLNPRVELVVWPLLSLRRYGRDKN--FFFFEAGRRCVSGPGEFTFQTVVAQEIFQLVLEAMQA 95 (98)
T ss_pred CeeEEEEECCcEEEEEecCCCccEEEeehhHeeeecCCCC--EEEEEccCcCCCCCCEEEEEcCcHHHHHHHHHHHHHH
Confidence 5689999999999999988899999999999999999888 555555543 468999999999999999999873
No 204
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=97.19 E-value=0.18 Score=56.47 Aligned_cols=28 Identities=11% Similarity=0.094 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 691 CDEKDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 691 ~~~le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
+.+.......+..+++.|..++.+++++
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 3333334444444444444444444433
No 205
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.7 Score=52.85 Aligned_cols=30 Identities=27% Similarity=0.480 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 736 LHELQRELKICNEELHAEKENVKKFLNEKV 765 (1268)
Q Consensus 736 l~~l~~el~~l~~el~~~~~~~~~l~~el~ 765 (1268)
+++++..+....++++..++....|.++++
T Consensus 347 IqeleqdL~a~~eei~~~eel~~~Lrsele 376 (521)
T KOG1937|consen 347 IQELEQDLEAVDEEIESNEELAEKLRSELE 376 (521)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 344444444444444444444444444443
No 206
>KOG4335 consensus FERM domain-containing protein KRIT1 [Signal transduction mechanisms]
Probab=97.18 E-value=3.6e-05 Score=87.42 Aligned_cols=262 Identities=11% Similarity=0.055 Sum_probs=168.4
Q ss_pred CCCCCCCHHHHHHHHcCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCC
Q 000820 264 PRHTIPGREEIEALLTGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDN 343 (1268)
Q Consensus 264 ~R~~~Ps~~Ei~Ai~~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~ 343 (1268)
+|..+++.+|+-.....-. .+.+.+...++++....-|-.. ..-.+.|++|.|+..++......+.+
T Consensus 236 a~~~~~~~Ve~~~~~ga~~-----------~c~lQ~gn~~~~r~~~~gir~~--~~~qs~f~~w~cs~~lslqlk~~h~p 302 (558)
T KOG4335|consen 236 ARNKYLCDVEDCEALGALR-----------VCRLQLGNYQPVRPAACGIRLS--EKLQSFFPAWLCSRGLSLQLKLRHRP 302 (558)
T ss_pred HhhhhhHHHHHHHHhhhhh-----------eehhhccCCccccchhhhcchH--HHHHHHhHHHHhhcchhhhhhhccCC
Confidence 4777888877764432211 1234444555555333322211 11234699999888877766665544
Q ss_pred CccccCCCcchHHHHHHHHHHhhhcCCCceeeEEEEEEeeccC--CcccCCCCchhhhhhHHHhhhhhhcCcccCChhhH
Q 000820 344 EEYIGLDDNKYIGDLLAEFKAAKDRSKGEILHCKLTFKKKLFR--ESDEAISEPMFVQLSYVQLQHDYVLGNYPVGRDDA 421 (1268)
Q Consensus 344 ~~~~~L~~~~~i~D~l~~~e~~~~~~~~~~~~~~l~fk~~~f~--~~~~~~~d~~~~~l~y~Q~~~d~l~G~~~~~~e~a 421 (1268)
+.-..-+..++.+|.+...... ...+..++-.++ .......|+.+..++|.-+++++++|.|.-...-.
T Consensus 303 -----~~~v~~wp~LL~e~~N~sp~~d----~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~L~Gfy~~~~~k~ 373 (558)
T KOG4335|consen 303 -----ARAVPGWPELLNEYRNVSPVSD----DPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNPLQGFYHRGGRKS 373 (558)
T ss_pred -----cccccccHHHHHHHhcCCccCC----ccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhhhccccccCCcee
Confidence 3333456778899987653321 234555555554 33445689999999999999999999999888888
Q ss_pred HHHHHHHHHHHhCCCCCCCCcCchh--hhhccccchhhhhhhcHHHHHHH-HHHHHHhc---CCCCHHHH--HHHHHHHH
Q 000820 422 AQLSALQILVEIGFVGSPESCNDWT--SLLERFLPRQVAITRAKREWELD-ILSRYRSM---EHLTKDDA--RQQFLRIL 493 (1268)
Q Consensus 422 ~~LAAL~~q~~~Gd~~~~~~~~~~~--~~l~~~lP~~~~~~~~~~~w~~~-I~~~~~~l---~~~s~~~A--~~~fL~~~ 493 (1268)
+.+|.+.++.-++.++..++...+. +.|+...|-. .....+..|.+. +...|+.. .|++.+.| +..+++.+
T Consensus 374 v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~~t~-~~~~~~~~wlef~~~~e~kn~n~~~gVs~ema~l~~~~~e~c 452 (558)
T KOG4335|consen 374 VSVASISLEGVHVVDSSEKHVLLVLNLEELKSWDHTS-PEEEEPILWLEFDIDSEYKNVNKLLGVSSEMAELMSSLIEYC 452 (558)
T ss_pred eehhhhhcccceeeccccccchhcccHHHhcccCCCC-ChhhcchhhhhhhhhccccCccceechhHHHHHHHHHHHHHh
Confidence 8888888888888777555543322 3344333322 222223456665 66666654 46777766 45689999
Q ss_pred hcCCCCCeeeEEEEeecCCCCCC--CceEEEEEecCceEEECCCccchhcccccccee
Q 000820 494 RTLPYGNSVFFSVRKIDDPIGLL--PGRIVLGINKRGVHFFRPVPKEYLHSAELRDIM 549 (1268)
Q Consensus 494 ~~~p~fGs~~F~v~~~~~~~~~~--p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~ 549 (1268)
...|.+|+.+|.-.....+...- .....++|| +|+++|...+.-...++.+..++
T Consensus 453 ~ei~~~ga~~~~pqd~ak~SpSD~~~~~~~vqv~-k~l~~ls~q~~~~~ssikh~~~i 509 (558)
T KOG4335|consen 453 IEIPSQGAEPAGPQDSAKGSPSDHSSSPAPVQVN-KGLPKLSRQGSVVSSSIKHLSTI 509 (558)
T ss_pred eeehhccccccCcccccCCCCCcccccccccccc-ccchhhccchhHHHHHhhhhhhe
Confidence 99999999999876555332221 235689999 99999999888777777665554
No 207
>cd01202 FRS2 Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain. Fibroblast growth factor receptor substrate 2 (FRS2/SNT1) Phosphotyrosine-binding domain (IRS1-like). FRS2 mediates signaling downstream of the FGF receptor. It has an N-terminal PTBi domain, which has a PH-like fold and is similiar to the PTB domain that is found in insulin receptor substrate molecules. This PTBi domain is shorter than the PTB domain which is found in SHC, Numb and other proteins. The PTBi domain binds to phosphotyrosines which are in NPXpY motifs.
Probab=97.11 E-value=0.0034 Score=56.52 Aligned_cols=87 Identities=24% Similarity=0.316 Sum_probs=68.6
Q ss_pred CCeeeEEEEeecCCCCCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEEEEcCe----eeEEEEE
Q 000820 499 GNSVFFSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKMRVAGV----LHIFQFE 574 (1268)
Q Consensus 499 fGs~~F~v~~~~~~~~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i~~~~~----~~~~~fe 574 (1268)
.-...|.|...++. +..-+..||-|...-+.+.+++.+ +..|||..|..|+...+ .|.+..+-. +..|.|.
T Consensus 3 ~~~~~F~V~~~~~~-~~~~g~g~L~vt~~~L~l~~~~~~--~~~WPl~~LRRYG~d~~--~FsFEAGRRC~tGeG~f~F~ 77 (102)
T cd01202 3 GHSNSFRVINVDDD-GNELGSGWLELTRTELTLYISGKE--PVVWPLLCLRRYGYNSD--LFSFESGRRCQTGEGIFAFR 77 (102)
T ss_pred CCCcEEEEEEECCC-CCeeeeEEEEecceEEEEEcCCCC--EEEccHHHhHhhccCCC--EEEEEccCcCCCCCCEEEEE
Confidence 34566777555543 335567899999999999987443 47999999999999988 555554433 5789999
Q ss_pred cCcHHHHHHHHHHHHH
Q 000820 575 TKQGEEICVALQTHIN 590 (1268)
Q Consensus 575 T~q~~eI~~li~~yi~ 590 (1268)
|.+|.+|..+++.||+
T Consensus 78 t~~~~~if~~v~~~I~ 93 (102)
T cd01202 78 CKRAEELFNLLQSYIQ 93 (102)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999999998
No 208
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=97.10 E-value=0.066 Score=63.94 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 786 KSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRN 824 (1268)
Q Consensus 786 ~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~ 824 (1268)
+.+.++...++.++.+++...+.+..+++.+..+++.+.
T Consensus 219 n~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~ 257 (916)
T KOG0249|consen 219 NRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLR 257 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444433
No 209
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=97.09 E-value=0.2 Score=53.26 Aligned_cols=38 Identities=29% Similarity=0.289 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKI 771 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l 771 (1268)
..+..++.++..++-+.+.+..+...++.+.+++..+.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333
No 210
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.08 E-value=0.14 Score=64.13 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=18.7
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhcC
Q 000820 982 TIYGSECNPGITPRAISELFRILKKEN 1008 (1268)
Q Consensus 982 t~~G~~~~~Gli~r~~~~lf~~~~~~~ 1008 (1268)
+++=+++..||=+.....+...+....
T Consensus 465 ~lilDEp~~gld~~~~~~~~~~l~~l~ 491 (563)
T TIGR00634 465 TLIFDEVDVGVSGETAQAIAKKLAQLS 491 (563)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 333366677888888888887777643
No 211
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=97.08 E-value=2.4 Score=57.18 Aligned_cols=38 Identities=8% Similarity=-0.049 Sum_probs=21.4
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhcCCceEEEEEEEe
Q 000820 982 TIYGSECNPGITPRAISELFRILKKENNKFSFSLKAYM 1019 (1268)
Q Consensus 982 t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~v~~s~ 1019 (1268)
+||=+++-.||=+.....+.+.+..........+-+|.
T Consensus 978 ~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH 1015 (1047)
T PRK10246 978 SLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISH 1015 (1047)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 44445556677777777777777553222223344554
No 212
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=97.08 E-value=0.056 Score=65.43 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEES 638 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~ 638 (1268)
+..++.++..++.++..+
T Consensus 83 l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 83 AAELESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444433
No 213
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.05 E-value=0.0084 Score=77.20 Aligned_cols=51 Identities=14% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 626 KRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQK 676 (1268)
Q Consensus 626 ~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~ 676 (1268)
..+..++.+...+..++..+...+..++..+..++.++..+...+..++..
T Consensus 343 ~~l~~lq~~~~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~ 393 (722)
T PF05557_consen 343 RALVQLQQENASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEAS 393 (722)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444443333333333333
No 214
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.92 Score=51.90 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=7.8
Q ss_pred HHHHHHHhHHHHHHHhhhc
Q 000820 865 LSELEVLYKEEQILRKRYF 883 (1268)
Q Consensus 865 ~~~L~~~~~~~~~~r~kl~ 883 (1268)
+..+...|+..+.....|+
T Consensus 497 lEkl~~Dyqairqen~~L~ 515 (521)
T KOG1937|consen 497 LEKLHQDYQAIRQENDQLF 515 (521)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333
No 215
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.98 E-value=0.29 Score=50.82 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=76.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 618 THSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTS 697 (1268)
Q Consensus 618 ~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~ 697 (1268)
+..|..++..+.+.+.++..-..+|-.++..+.+.+......+..+..++..+.....+++..+.++.+...+.+-+...
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 34577888888888888888888888888888888888888888888888888777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 000820 698 LQVVLLEKRSMEAKMAKL 715 (1268)
Q Consensus 698 l~~l~~e~~~le~~l~~l 715 (1268)
+..++.++..+...+...
T Consensus 89 l~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 89 LGQLEAELAELREELACA 106 (202)
T ss_pred hhhhHHHHHHHHHHHHhh
Confidence 777777777666666554
No 216
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=96.98 E-value=0.11 Score=65.06 Aligned_cols=7 Identities=0% Similarity=0.216 Sum_probs=2.6
Q ss_pred eeeeccc
Q 000820 894 RVYCRLR 900 (1268)
Q Consensus 894 ~~~~RvR 900 (1268)
+..|.+.
T Consensus 397 ~f~v~~~ 403 (563)
T TIGR00634 397 EFTVEIK 403 (563)
T ss_pred EEEEEEe
Confidence 3333333
No 217
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.95 E-value=1.6 Score=53.12 Aligned_cols=21 Identities=14% Similarity=0.186 Sum_probs=9.9
Q ss_pred hhhHHHhhhhhhcCcccCChh
Q 000820 399 QLSYVQLQHDYVLGNYPVGRD 419 (1268)
Q Consensus 399 ~l~y~Q~~~d~l~G~~~~~~e 419 (1268)
.|--.|--.|.+...+--+.+
T Consensus 191 ~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 191 ELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 344445555555555544433
No 218
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.95 E-value=0.53 Score=59.52 Aligned_cols=94 Identities=23% Similarity=0.280 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDL 813 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el 813 (1268)
.++..++.+...++..+....++++.++.++.+.+..+..++.++....+.....+.++...+.....++.++..++.++
T Consensus 596 eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~ 675 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLEAEA 675 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHH
Q 000820 814 ATLKSTLASRNMDL 827 (1268)
Q Consensus 814 ~~l~~el~~l~~~~ 827 (1268)
..+...+..++.++
T Consensus 676 ~~l~~Ki~~Le~El 689 (769)
T PF05911_consen 676 EELQSKISSLEEEL 689 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 219
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=96.95 E-value=0.66 Score=49.36 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000820 757 VKKFLNEKVLLEQKISKLEKK 777 (1268)
Q Consensus 757 ~~~l~~el~~l~~~l~~le~~ 777 (1268)
+..+.-+.+.+..++..++.+
T Consensus 102 l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 102 LKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 220
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.94 E-value=0.00021 Score=91.58 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 667 KDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVV 701 (1268)
Q Consensus 667 ~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l 701 (1268)
+.++.+++.++.....+.+.+..++..++.++..+
T Consensus 369 k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l 403 (713)
T PF05622_consen 369 KKQIQELEQKLSEESRRADKLEFENKQLEEKLEAL 403 (713)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333
No 221
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=96.91 E-value=0.49 Score=59.82 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHH
Q 000820 419 DDAAQLSALQILVE 432 (1268)
Q Consensus 419 e~a~~LAAL~~q~~ 432 (1268)
+.|.+|..+..|.+
T Consensus 297 ~ta~kL~~~e~ql~ 310 (769)
T PF05911_consen 297 KTASKLSQLEAQLK 310 (769)
T ss_pred HHHHHHHHHHHHHH
Confidence 46677777777763
No 222
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=96.89 E-value=1.4 Score=59.48 Aligned_cols=9 Identities=22% Similarity=0.143 Sum_probs=5.0
Q ss_pred CCCCCeeeE
Q 000820 496 LPYGNSVFF 504 (1268)
Q Consensus 496 ~p~fGs~~F 504 (1268)
+|..||+-+
T Consensus 506 CPVCGS~~H 514 (1047)
T PRK10246 506 CPLCGSTSH 514 (1047)
T ss_pred cCCCCcccC
Confidence 466666543
No 223
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=96.89 E-value=0.22 Score=61.66 Aligned_cols=32 Identities=9% Similarity=0.245 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 651 ERQRQEAKMQEELDDLKDSLRFEKQKLAEVMA 682 (1268)
Q Consensus 651 ~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~ 682 (1268)
......+-++.++..++.++.+.+.++.....
T Consensus 158 ~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~ 189 (498)
T TIGR03007 158 DSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQ 189 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666666665543
No 224
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.87 E-value=1.3 Score=50.58 Aligned_cols=10 Identities=0% Similarity=-0.107 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 000820 581 ICVALQTHIN 590 (1268)
Q Consensus 581 I~~li~~yi~ 590 (1268)
|..|+.-|..
T Consensus 24 ~~~L~kk~~e 33 (309)
T PF09728_consen 24 LEALCKKYAE 33 (309)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 225
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=96.84 E-value=0.52 Score=57.40 Aligned_cols=27 Identities=4% Similarity=-0.028 Sum_probs=17.2
Q ss_pred eeEEEEEcCcHHHHHHHHHHHHHHHHH
Q 000820 568 LHIFQFETKQGEEICVALQTHINDVML 594 (1268)
Q Consensus 568 ~~~~~feT~q~~eI~~li~~yi~~~~~ 594 (1268)
.-.+.|+.+.+.....+.+.+++.++.
T Consensus 133 ii~is~~~~dp~~A~~i~n~~~~~y~~ 159 (444)
T TIGR03017 133 VISIEFSGVDPRFAATVANAFAQAYID 159 (444)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 345777788777777666665554433
No 226
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=96.82 E-value=0.0025 Score=56.04 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=44.5
Q ss_pred ceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCC--CCCceEEEEEee
Q 000820 283 LTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLS--AHSSFSLFECRK 331 (1268)
Q Consensus 283 ~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~--~~~~F~L~~~~~ 331 (1268)
..+.|++|||....|.+..+.++.+|.+.+|.++||+ -..+|+||++++
T Consensus 2 V~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~~YFaLFev~~ 52 (87)
T cd01777 2 VELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQNYFALFEVIN 52 (87)
T ss_pred eEEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHHhheeeeEEec
Confidence 5688999999999999999999999999999999998 456899999753
No 227
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.78 E-value=2.2 Score=55.68 Aligned_cols=52 Identities=17% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccccc
Q 000820 842 EMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKI 893 (1268)
Q Consensus 842 ~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i 893 (1268)
++.-.+.+.++...-..++......+..+.|++++.++++.+++|..|+..+
T Consensus 1201 ellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ 1252 (1320)
T PLN03188 1201 ELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLV 1252 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555545555555555666777888888888888888777643
No 228
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=96.77 E-value=0.95 Score=47.72 Aligned_cols=50 Identities=16% Similarity=0.300 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDS 669 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~ 669 (1268)
.+..++..-..|..+.++..+.-..+--++...+.++.++..++..++.+
T Consensus 109 ~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~q 158 (330)
T KOG2991|consen 109 DITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQ 158 (330)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444444444443
No 229
>PRK10869 recombination and repair protein; Provisional
Probab=96.74 E-value=0.55 Score=58.33 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=21.5
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhcCC
Q 000820 982 TIYGSECNPGITPRAISELFRILKKENN 1009 (1268)
Q Consensus 982 t~~G~~~~~Gli~r~~~~lf~~~~~~~~ 1009 (1268)
+++=++++.||=+.....+.+.+.....
T Consensus 455 ~li~DEpd~gld~~~~~~v~~~l~~l~~ 482 (553)
T PRK10869 455 ALIFDEVDVGISGPTAAVVGKLLRQLGE 482 (553)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHhc
Confidence 4455788889999998888888877543
No 230
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=96.74 E-value=2.3 Score=54.63 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNAD---------QLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLC 691 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~---------~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~ 691 (1268)
+..+-.+|+.|+.++...+++.- +.+.+......++++++.+++.++..+.+++..+.........+..+.
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~ 485 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEK 485 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455555555555555443321 112223334444444444444444444444444443333333444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 000820 692 DEKDTSLQVVLLEKRSMEAKMAKL 715 (1268)
Q Consensus 692 ~~le~~l~~l~~e~~~le~~l~~l 715 (1268)
..++..++....++..++.++.++
T Consensus 486 ~~~k~~L~~~~~el~~~~ee~~~~ 509 (1041)
T KOG0243|consen 486 EKLKSKLQNKNKELESLKEELQQA 509 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444333333
No 231
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.72 E-value=1.6 Score=49.69 Aligned_cols=11 Identities=27% Similarity=0.356 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000820 635 VEESQRNADQL 645 (1268)
Q Consensus 635 l~e~~~~l~~l 645 (1268)
+.-+++++.++
T Consensus 224 v~flerkv~el 234 (502)
T KOG0982|consen 224 VRFLERKVQEL 234 (502)
T ss_pred HHHHHHHHHHh
Confidence 33333333333
No 232
>PRK10869 recombination and repair protein; Provisional
Probab=96.72 E-value=0.32 Score=60.43 Aligned_cols=10 Identities=0% Similarity=-0.120 Sum_probs=4.5
Q ss_pred cceeeecccC
Q 000820 892 KIRVYCRLRP 901 (1268)
Q Consensus 892 ~i~~~~RvRp 901 (1268)
+.++.|.+.|
T Consensus 390 ~a~f~v~~~~ 399 (553)
T PRK10869 390 HGKFTIDVKF 399 (553)
T ss_pred CcEEEEEEec
Confidence 4444444443
No 233
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.67 E-value=1.5 Score=53.97 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQL 645 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l 645 (1268)
.++.++.++..++...+.+++++
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 234
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=96.66 E-value=2.2 Score=50.40 Aligned_cols=10 Identities=30% Similarity=0.644 Sum_probs=4.7
Q ss_pred CCCHHHHHHH
Q 000820 268 IPGREEIEAL 277 (1268)
Q Consensus 268 ~Ps~~Ei~Ai 277 (1268)
.|-..||..+
T Consensus 43 lPv~dEi~kV 52 (570)
T COG4477 43 LPVNDEISKV 52 (570)
T ss_pred CCchhHHHHH
Confidence 3444455544
No 235
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=96.64 E-value=0.31 Score=63.67 Aligned_cols=29 Identities=17% Similarity=-0.110 Sum_probs=17.4
Q ss_pred HHHHHHHhcc--cceEEEeecccCCCccccc
Q 000820 955 RYLVQSAVDG--YNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 955 ~~~v~~~~~G--~n~~i~ayG~tgsGKT~t~ 983 (1268)
+.-+.-...+ ..+..|+-+..|.|||++-
T Consensus 534 r~~l~~~~~~~~~kvi~vts~~~G~GKTt~a 564 (754)
T TIGR01005 534 EEAVAEAKSVAEPEVVETQRPRPVLGKSDIE 564 (754)
T ss_pred HHHHhhhccCCCceEEEeecCCCCCChhHHH
Confidence 3334444443 3455566667899999875
No 236
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.64 E-value=2.7 Score=51.25 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 789 EQERKALKLQVSELERKLGEATLDLATLKSTL 820 (1268)
Q Consensus 789 e~ei~~l~~~i~~l~~~l~~l~~el~~l~~el 820 (1268)
+..+..+..++..|++++.....+-.-+...+
T Consensus 330 ~~~~~qL~~qVAsLQeev~sq~qEqaiLq~SL 361 (739)
T PF07111_consen 330 RDSVKQLRGQVASLQEEVASQQQEQAILQHSL 361 (739)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555554444444444444433
No 237
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.62 E-value=0.26 Score=58.07 Aligned_cols=91 Identities=12% Similarity=0.192 Sum_probs=60.3
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 619 HSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSL 698 (1268)
Q Consensus 619 ~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l 698 (1268)
++...|+.++..|+-..+.+.-++.-+.+++....+++.+++.=++.-+.++...++.++..--.+..|+.+.-++-.++
T Consensus 104 ~~~~~yQerLaRLe~dkesL~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaev 183 (861)
T KOG1899|consen 104 PEYPEYQERLARLEMDKESLQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEV 183 (861)
T ss_pred CcchHHHHHHHHHhcchhhheehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHH
Confidence 35678889999998888888888888888888777777777777777666666666555544444444554444444444
Q ss_pred HHHHHHHHHHH
Q 000820 699 QVVLLEKRSME 709 (1268)
Q Consensus 699 ~~l~~e~~~le 709 (1268)
..+.-.+..++
T Consensus 184 SeLKLkltalE 194 (861)
T KOG1899|consen 184 SELKLKLTALE 194 (861)
T ss_pred HHhHHHHHHHH
Confidence 44444444433
No 238
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.61 E-value=2.7 Score=50.85 Aligned_cols=52 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQ 675 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~ 675 (1268)
|+..++++...+++...-+++..+++.+.+......+.+++.++.++.+..+
T Consensus 353 YQ~Dl~Elt~RLEEQ~~VVeeA~e~~~e~e~r~e~~E~EvD~lksQLADYQQ 404 (1480)
T COG3096 353 YQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADYQQ 404 (1480)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333444444444444334444444444444433333
No 239
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.58 E-value=0.16 Score=54.04 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhcccccccc
Q 000820 860 MQGAQLSELEVLYKEEQILRKRYFNTIEDMK 890 (1268)
Q Consensus 860 ~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k 890 (1268)
..+..+.+|.+.|..+-..|++|+.++.-+.
T Consensus 159 ~~~sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 159 YSDSKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 3445667788888888888888887776665
No 240
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.54 E-value=0.00061 Score=87.53 Aligned_cols=8 Identities=25% Similarity=0.584 Sum_probs=4.2
Q ss_pred ccccccCC
Q 000820 1024 QDTLVDLL 1031 (1268)
Q Consensus 1024 ~e~v~DLL 1031 (1268)
.+.||.||
T Consensus 637 r~av~~ll 644 (722)
T PF05557_consen 637 REAVYSLL 644 (722)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 34455555
No 241
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=96.52 E-value=0.31 Score=57.54 Aligned_cols=19 Identities=21% Similarity=0.440 Sum_probs=14.0
Q ss_pred CCcHHHHHHHHHHHHhcCC
Q 000820 991 GITPRAISELFRILKKENN 1009 (1268)
Q Consensus 991 Gli~r~~~~lf~~~~~~~~ 1009 (1268)
-=-+|-+..||..+.+...
T Consensus 486 er~~rglrnifgKlrRSqS 504 (861)
T KOG1899|consen 486 ERTRRGLRNIFGKLRRSQS 504 (861)
T ss_pred ccchhHHHHHHHHhhhccc
Confidence 3457888999999987543
No 242
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.51 E-value=0.27 Score=52.36 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 640 RNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDT 696 (1268)
Q Consensus 640 ~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~ 696 (1268)
.+++.++.+....+-+++.++..++..+.+.+..+.+...+..+...+.+.++.++.
T Consensus 25 ~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek 81 (307)
T PF10481_consen 25 QQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEK 81 (307)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHH
Confidence 333333333333333333344444333333333344444444444444443333333
No 243
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.51 E-value=0.27 Score=48.56 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccc
Q 000820 851 NEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIE 887 (1268)
Q Consensus 851 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~ 887 (1268)
...+......+...+..+...+.++....+-|++.|+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE 129 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE 129 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333334444444444444444444444445554444
No 244
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=96.48 E-value=0.011 Score=53.12 Aligned_cols=81 Identities=11% Similarity=0.144 Sum_probs=60.3
Q ss_pred hHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCCC
Q 000820 401 SYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEHL 480 (1268)
Q Consensus 401 ~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~~ 480 (1268)
.|..+...|......++.++-++|=||.-|+..||++.+.. . +...... .-..+|+++.||
T Consensus 4 ~F~~A~~~v~~~~~~~~~~~~L~lYalyKQAt~G~~~~~~P--~------------~~d~~~~-----~K~~AW~~l~~m 64 (85)
T cd00435 4 EFEAAAEKVKKLKTKPSNEEKLQLYSLYKQATVGDCNTERP--G------------MFDLKGR-----AKWDAWNSLKGM 64 (85)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHHhccCCCCCCCC--C------------cccHhhH-----HHHHHHHHcCCC
Confidence 46677777777777889999999999999999998864321 1 1111122 233479999999
Q ss_pred CHHHHHHHHHHHHhcC-CCCC
Q 000820 481 TKDDARQQFLRILRTL-PYGN 500 (1268)
Q Consensus 481 s~~~A~~~fL~~~~~~-p~fG 500 (1268)
|+++|+..|++++..+ |-||
T Consensus 65 s~~eA~~~YV~~~~~l~~~~~ 85 (85)
T cd00435 65 SKEDAMKAYIAKVEELIAKYA 85 (85)
T ss_pred CHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999865 6665
No 245
>PLN02939 transferase, transferring glycosyl groups
Probab=96.48 E-value=1.3 Score=57.13 Aligned_cols=51 Identities=22% Similarity=0.171 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRF 672 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~ 672 (1268)
+.+-.-+...++.+--+.+....+-+.++..-.+.+.++.++.-++..+.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (977)
T PLN02939 131 EDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINILEMRLSE 181 (977)
T ss_pred HHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhh
Confidence 333333344444333333333333333444444444455555555444444
No 246
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.47 E-value=0.37 Score=61.12 Aligned_cols=12 Identities=17% Similarity=0.365 Sum_probs=6.3
Q ss_pred EEEEecCceEEE
Q 000820 521 VLGINKRGVHFF 532 (1268)
Q Consensus 521 ~LgIn~~GI~il 532 (1268)
+|++...|-.+.
T Consensus 456 ll~lts~~e~v~ 467 (717)
T PF10168_consen 456 LLALTSSGECVV 467 (717)
T ss_pred EEEEccCCcEEE
Confidence 555555554443
No 247
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=96.46 E-value=1.2 Score=51.74 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=7.7
Q ss_pred cceeeecccCCCc
Q 000820 892 KIRVYCRLRPLNE 904 (1268)
Q Consensus 892 ~i~~~~RvRp~~~ 904 (1268)
+.+|+--|||++.
T Consensus 356 q~~I~e~ve~i~~ 368 (596)
T KOG4360|consen 356 QKRIFETVEQINE 368 (596)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666666643
No 248
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=96.43 E-value=3.4 Score=50.00 Aligned_cols=19 Identities=11% Similarity=0.308 Sum_probs=9.0
Q ss_pred ccchhhhhhhcHHHHHHHH
Q 000820 452 FLPRQVAITRAKREWELDI 470 (1268)
Q Consensus 452 ~lP~~~~~~~~~~~w~~~I 470 (1268)
.||+.+........+-..|
T Consensus 183 iIPKrLRsssDRSKFYrLI 201 (1480)
T COG3096 183 IIPKRLRSASDRSKFYRLI 201 (1480)
T ss_pred cchHhhhcchhHHHHHHHH
Confidence 4566655544444433333
No 249
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=96.43 E-value=3 Score=49.34 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLK 667 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~ 667 (1268)
+..++.++..-..+++..+..+..++..+......++..++.+.
T Consensus 48 L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~ 91 (384)
T PF03148_consen 48 LRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALR 91 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444455555555555555555555555554444
No 250
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.43 E-value=1.5 Score=46.24 Aligned_cols=22 Identities=23% Similarity=0.219 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000820 684 HDRLKSLCDEKDTSLQVVLLEK 705 (1268)
Q Consensus 684 ~~~l~~e~~~le~~l~~l~~e~ 705 (1268)
+.+++....+++...+.+..+.
T Consensus 54 L~q~etrnrdl~t~nqrl~~E~ 75 (333)
T KOG1853|consen 54 LDQLETRNRDLETRNQRLTTEQ 75 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444333333333
No 251
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=96.40 E-value=2.2 Score=47.45 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=27.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDL 666 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l 666 (1268)
.+..++.+-..|+.+++-.......+..++..++.....+....+.-
T Consensus 28 ~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqE 74 (310)
T PF09755_consen 28 RIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQE 74 (310)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666555554444433
No 252
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.40 E-value=0.74 Score=56.16 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=9.9
Q ss_pred HHHHhcccceEEEeec
Q 000820 958 VQSAVDGYNVCIFAYG 973 (1268)
Q Consensus 958 v~~~~~G~n~~i~ayG 973 (1268)
+..+-.|..+.|...+
T Consensus 369 i~~v~~Gq~V~v~~~a 384 (457)
T TIGR01000 369 ISGIKVGQKVRFKLTQ 384 (457)
T ss_pred HhhcCCCCeEEEEEec
Confidence 4455667777776544
No 253
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=96.39 E-value=2.1 Score=47.18 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 647 EELHERQRQEAKMQEELDDLKDSLRFE 673 (1268)
Q Consensus 647 ~~l~~l~~e~~~l~~el~~l~~~l~~~ 673 (1268)
.+..+++..+...-.++..++.++..+
T Consensus 38 ~~~~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 38 KRAAEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 333333333333333333333333333
No 254
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=96.31 E-value=2.9 Score=47.90 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 740 QRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTE 779 (1268)
Q Consensus 740 ~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~ 779 (1268)
+.+++++..++.--.+.++.++.++..++.++.+++.+..
T Consensus 308 ~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 308 RKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555553
No 255
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=96.20 E-value=0.01 Score=68.37 Aligned_cols=88 Identities=22% Similarity=0.209 Sum_probs=73.6
Q ss_pred CCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHH
Q 000820 280 GRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLL 359 (1268)
Q Consensus 280 ~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l 359 (1268)
.+++.|+||.-||+.+.+.||...|++||++.++.+-.....+.|+|+++. ..-...+.+.+.+.+-+++
T Consensus 186 vrklvVKvfseDgasksL~Vder~tardV~~lL~eKnH~~~d~~W~LvEh~----------P~L~iER~fEDHElVVEvl 255 (622)
T KOG3751|consen 186 VRKLVVKVFSEDGASKSLLVDERMTARDVCQLLAEKNHCADDEDWCLVEHY----------PHLQIERVFEDHELVVEVL 255 (622)
T ss_pred ccceeEEEEccCCceeeEeecccccHHHHHHHHHHhhhhhcccceeeeeec----------chhhhhhhhhhHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999843 2234457789999999999
Q ss_pred HHHHHhhhcCCCceeeEEEEEEeecc
Q 000820 360 AEFKAAKDRSKGEILHCKLTFKKKLF 385 (1268)
Q Consensus 360 ~~~e~~~~~~~~~~~~~~l~fk~~~f 385 (1268)
..|-... .-+|+|+++++
T Consensus 256 s~W~~ds--------eNK~lF~k~~~ 273 (622)
T KOG3751|consen 256 SMWTQDS--------ENKLLFRKNPA 273 (622)
T ss_pred hhcccCC--------CceeEEeecch
Confidence 9995422 34688888774
No 256
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.19 E-value=2.6 Score=46.15 Aligned_cols=109 Identities=6% Similarity=0.116 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 787 SFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEELREMKEDIDRKNEQTAAILKMQGAQLS 866 (1268)
Q Consensus 787 ~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~ 866 (1268)
.+....++++.-+....+-......++..+...+..++.+.-......+..+ ...-.+.....-.+.....++..+.
T Consensus 226 lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aN---k~vL~la~ekt~~~k~~~~lq~kiq 302 (391)
T KOG1850|consen 226 LYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENAN---KAVLQLAEEKTVRDKEYETLQKKIQ 302 (391)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444333333333322 1111122222233344455556666
Q ss_pred HHHHHhHHHHHHHhhhccccccccccceeeec
Q 000820 867 ELEVLYKEEQILRKRYFNTIEDMKGKIRVYCR 898 (1268)
Q Consensus 867 ~L~~~~~~~~~~r~kl~~~i~~~k~~i~~~~R 898 (1268)
.|+..++.++..|..+...+++.++.|.+-+-
T Consensus 303 ~LekLcRALq~ernel~~~~~~~e~~v~~k~~ 334 (391)
T KOG1850|consen 303 RLEKLCRALQTERNELNKKLEDLEAQVSAKNA 334 (391)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcccchhhh
Confidence 67777777778888888888888777777333
No 257
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=96.19 E-value=0.68 Score=56.44 Aligned_cols=25 Identities=16% Similarity=0.094 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEE 648 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~ 648 (1268)
...++..++.++..++.++..++..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~rL~a~ 119 (457)
T TIGR01000 95 EENQKQLLEQQLDNLKDQKKSLDTL 119 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554444444444444433
No 258
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=96.16 E-value=5.2 Score=49.39 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHER 652 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l 652 (1268)
..+..++..+.-++.++..++..++.++.++
T Consensus 105 ~sl~~e~a~lk~~l~e~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 105 DSLSSELAVLKIRLQELDQELRRLRRQLEEL 135 (511)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666666666666666666655
No 259
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=96.13 E-value=2.8 Score=45.91 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=11.2
Q ss_pred HHHHHHHHHhHHHHHHHhhhccccccc
Q 000820 863 AQLSELEVLYKEEQILRKRYFNTIEDM 889 (1268)
Q Consensus 863 ~~~~~L~~~~~~~~~~r~kl~~~i~~~ 889 (1268)
..+..+...+..++.+-+-|+.+-.++
T Consensus 292 k~~~~lq~kiq~LekLcRALq~ernel 318 (391)
T KOG1850|consen 292 KEYETLQKKIQRLEKLCRALQTERNEL 318 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccH
Confidence 333344444444444444444333333
No 260
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.09 E-value=0.22 Score=63.14 Aligned_cols=10 Identities=20% Similarity=0.604 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 000820 585 LQTHINDVML 594 (1268)
Q Consensus 585 i~~yi~~~~~ 594 (1268)
+..+|..++.
T Consensus 505 F~~~Ik~lL~ 514 (717)
T PF10168_consen 505 FEKHIKSLLQ 514 (717)
T ss_pred HHHHHHHHhc
Confidence 3455554444
No 261
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=96.07 E-value=2.1 Score=44.70 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 691 CDEKDTSLQVVLLEK 705 (1268)
Q Consensus 691 ~~~le~~l~~l~~e~ 705 (1268)
+.-+...+...+.++
T Consensus 12 IsLLKqQLke~q~E~ 26 (202)
T PF06818_consen 12 ISLLKQQLKESQAEV 26 (202)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 262
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.07 E-value=3.7 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=20.1
Q ss_pred ccccCCCCCCCcHHHHHHHHHHHHhcCCc
Q 000820 982 TIYGSECNPGITPRAISELFRILKKENNK 1010 (1268)
Q Consensus 982 t~~G~~~~~Gli~r~~~~lf~~~~~~~~~ 1010 (1268)
||.=++.+-||=.++...|=..+..-+..
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~~ 484 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSEH 484 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhcC
Confidence 55557777888777777777777665544
No 263
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.07 E-value=2.4 Score=44.69 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000820 675 QKLAEVMADHDRLKSLCD 692 (1268)
Q Consensus 675 ~~l~~l~~e~~~l~~e~~ 692 (1268)
.+...++.+.+++..+.+
T Consensus 59 trnrdl~t~nqrl~~E~e 76 (333)
T KOG1853|consen 59 TRNRDLETRNQRLTTEQE 76 (333)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333444433333
No 264
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=96.02 E-value=2 Score=43.42 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 755 ENVKKFLNEKVLLEQKISKLEKKTEEM 781 (1268)
Q Consensus 755 ~~~~~l~~el~~l~~~l~~le~~~~el 781 (1268)
++...|+...+.++..+..+..-++..
T Consensus 98 e~E~qLr~rRD~LErrl~~l~~tierA 124 (159)
T PF05384_consen 98 EREKQLRERRDELERRLRNLEETIERA 124 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333444433333333333
No 265
>PLN02939 transferase, transferring glycosyl groups
Probab=95.98 E-value=6.4 Score=51.04 Aligned_cols=6 Identities=0% Similarity=0.058 Sum_probs=2.7
Q ss_pred CCCcHH
Q 000820 990 PGITPR 995 (1268)
Q Consensus 990 ~Gli~r 995 (1268)
.|+++-
T Consensus 621 TaLV~p 626 (977)
T PLN02939 621 TAFVAP 626 (977)
T ss_pred HHHHHH
Confidence 355533
No 266
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=95.97 E-value=0.016 Score=49.75 Aligned_cols=57 Identities=23% Similarity=0.217 Sum_probs=47.3
Q ss_pred cEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHH
Q 000820 293 TFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAE 361 (1268)
Q Consensus 293 ~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~ 361 (1268)
+.+++.+-+.+|++||+..++.++.+.+++.||||.+ .++.+.-|.++++-..+-.+
T Consensus 14 t~KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl~------------vdg~~~qLadd~~Pq~ika~ 70 (87)
T cd01776 14 TGKTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFLF------------VEETWQQLAPDTYPQRIKAE 70 (87)
T ss_pred eeeeeecCCCCcHHHHHHHHHHHhccCChhheeEEEE------------ECCcEEEcCcccccceechh
Confidence 5789999999999999999999999999999999973 24556668887776665444
No 267
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=95.95 E-value=3.2 Score=50.33 Aligned_cols=17 Identities=6% Similarity=0.073 Sum_probs=8.2
Q ss_pred ccCCCCCCCCcccEEEE
Q 000820 1082 GTQMNEESSRSHLILSI 1098 (1268)
Q Consensus 1082 ~t~~n~~ssrsH~i~~i 1098 (1268)
-|+.....++.|.-|.|
T Consensus 490 VTHlPQVAa~ad~H~~V 506 (557)
T COG0497 490 VTHLPQVAAMADTHFLV 506 (557)
T ss_pred EecHHHHHhhhcceEEE
Confidence 34444444555555444
No 268
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=95.95 E-value=3.5 Score=45.51 Aligned_cols=59 Identities=20% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 758 KKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATL 816 (1268)
Q Consensus 758 ~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l 816 (1268)
..++.+...+..++..++.+.........-+..+++.+..++..++..+..++..+...
T Consensus 153 ~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~ 211 (240)
T PF12795_consen 153 WLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQK 211 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333344444444444445555555555554444433
No 269
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=4.4 Score=46.58 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=13.6
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 000820 576 KQGEEICVALQTHINDVMLR 595 (1268)
Q Consensus 576 ~q~~eI~~li~~yi~~~~~~ 595 (1268)
|.+.....++++-||..+.+
T Consensus 107 Pes~Rtq~~LSavvNfa~fR 126 (446)
T KOG4438|consen 107 PESSRTQRFLSAVVNFALFR 126 (446)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 66677777788888744443
No 270
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=95.93 E-value=3.8 Score=45.86 Aligned_cols=37 Identities=19% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 618 THSIELFEKRIQDLSKTVEESQRNADQLLEELHERQR 654 (1268)
Q Consensus 618 ~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~ 654 (1268)
..+...+++++..|+.+++..+.+.+..+..+..++.
T Consensus 290 sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d 326 (593)
T KOG4807|consen 290 SDGHEALEKEVQALRAQLEAWRLQGEAPQSALRSQED 326 (593)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhh
Confidence 4578999999999999999998888777776666554
No 271
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=95.91 E-value=0.11 Score=55.30 Aligned_cols=91 Identities=19% Similarity=0.284 Sum_probs=21.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 619 HSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSL 698 (1268)
Q Consensus 619 ~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l 698 (1268)
..+......+..++.++.++.+...++..++..+..++..++.++......+..++.++..++.++..+..++.+....+
T Consensus 67 ~~~~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 67 AQISSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666665555555555555555555555555555555555555555555555554444444444
Q ss_pred HHHHHHHHHHH
Q 000820 699 QVVLLEKRSME 709 (1268)
Q Consensus 699 ~~l~~e~~~le 709 (1268)
+.+..|+..+.
T Consensus 147 e~l~DE~~~L~ 157 (194)
T PF08614_consen 147 EILQDELQALQ 157 (194)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
No 272
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.88 E-value=2.3 Score=46.34 Aligned_cols=39 Identities=21% Similarity=0.317 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 740 QRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 740 ~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
+..+..++..+......+..+...+..++.++.+++.+.
T Consensus 97 e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~ 135 (221)
T PF04012_consen 97 EEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKR 135 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444444444444444444443333
No 273
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.85 E-value=0.62 Score=51.03 Aligned_cols=14 Identities=14% Similarity=-0.206 Sum_probs=6.6
Q ss_pred hhccccccceeecc
Q 000820 539 YLHSAELRDIMQFG 552 (1268)
Q Consensus 539 ~l~~~~~~~I~s~~ 552 (1268)
++..|||=....|.
T Consensus 27 p~~~~pfls~~qk~ 40 (401)
T PF06785_consen 27 PLVCYPFLSDSQKN 40 (401)
T ss_pred HHhHhhhcCHHHHh
Confidence 34455554444443
No 274
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.84 E-value=5.2 Score=46.67 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQE 656 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~ 656 (1268)
.+..++-++.....++...+..+...++.+.++.
T Consensus 57 N~~~ql~~lr~~~~~~~~~l~~vt~~~~ql~kEK 90 (613)
T KOG0992|consen 57 NESEQLCELRSQCNELTTKLSTVTQGLQQLQKEK 90 (613)
T ss_pred cHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444444444444444444444444433
No 275
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=95.84 E-value=1.9 Score=52.61 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 649 LHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMAD 683 (1268)
Q Consensus 649 l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e 683 (1268)
.........-++.++..+++++.+.+.++...+.+
T Consensus 166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666666666666665554
No 276
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=95.78 E-value=0.93 Score=52.86 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 628 IQDLSKTVEESQRNA 642 (1268)
Q Consensus 628 l~eL~~~l~e~~~~l 642 (1268)
+.+++.++...+..+
T Consensus 17 V~~m~~~L~~~~~~L 31 (344)
T PF12777_consen 17 VEEMQEELEEKQPEL 31 (344)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 277
>PF13166 AAA_13: AAA domain
Probab=95.77 E-value=3.9 Score=53.20 Aligned_cols=7 Identities=29% Similarity=0.847 Sum_probs=2.7
Q ss_pred CcccCCh
Q 000820 412 GNYPVGR 418 (1268)
Q Consensus 412 G~~~~~~ 418 (1268)
|-+.+..
T Consensus 83 ~i~~Lge 89 (712)
T PF13166_consen 83 GIFTLGE 89 (712)
T ss_pred cceehhh
Confidence 3333443
No 278
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.76 E-value=7.8 Score=48.07 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=16.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 727 NLVLTNNQTLHELQRELKICNEELHAEKENVKKFL 761 (1268)
Q Consensus 727 e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~ 761 (1268)
+.++.+..++.+|+.+....-+++.....++..+-
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~ 194 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEKVLELKEEIKSLC 194 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555554444444444444444443
No 279
>cd01778 RASSF1_RA Ubiquitin-like domain of RASSF1 tumour supproessor protein. RASSF1 (also known as RASSF3 and NORE1) is a tumour suppressor protein with a C-terminal Ras-associating (RA) domain that binds Ras. RASSF1 also binds the proapoptotic protein kinase MST1 and is thus thought to regulate the proapoptotic signalling pathway. RASSF1 also associates with microtubule-associated proteins like MAP1B and regulates tubulin polymerization. RASSF1 also binds CDC20 and regulates mitosis by inhibiting the anaphase-promoting complex and preventing degradation of cyclin A and cyclin B until the spindle checkpoint becomes fully operational.
Probab=95.73 E-value=0.036 Score=49.99 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=41.4
Q ss_pred ceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCC-CCCceEEEEE
Q 000820 283 LTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLS-AHSSFSLFEC 329 (1268)
Q Consensus 283 ~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~-~~~~F~L~~~ 329 (1268)
....+++|-|+...|.|+|.+|+.||++.+.++..+. ++..|+||++
T Consensus 7 ~~~sf~lp~~s~k~v~IsS~tTt~eVI~~LL~KF~v~~nP~kFALYe~ 54 (96)
T cd01778 7 TSTSLPLPKDTAKHLHISSKTTVREVIEALLKKFLVVDNPRKFALFER 54 (96)
T ss_pred EEEEEeccCCceeEEEEecCCcHHHHHHHHHHhheeccCCcceEEEEE
Confidence 3455778899999999999999999999999999997 6669999974
No 280
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=95.72 E-value=4.9 Score=45.55 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=23.9
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 616 VKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQR 654 (1268)
Q Consensus 616 ~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~ 654 (1268)
..+...+.+.+++..+..+-+.+..+++.++-...-++.
T Consensus 40 ~sP~~~e~l~~rv~slsq~Nkvlk~elet~k~kcki~qe 78 (552)
T KOG2129|consen 40 FSPSPGESLGARVSSLSQRNKVLKGELETLKGKCKIMQE 78 (552)
T ss_pred CCCCCHHHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHh
Confidence 445567778778777776665555555555554444433
No 281
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.67 E-value=1.5 Score=48.23 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcCCc
Q 000820 994 PRAISELFRILKKENNK 1010 (1268)
Q Consensus 994 ~r~~~~lf~~~~~~~~~ 1010 (1268)
..-++.||+.++.++.+
T Consensus 282 sLdcRrLfDsLreEnlg 298 (401)
T PF06785_consen 282 SLDCRRLFDSLREENLG 298 (401)
T ss_pred hHHHHHHHhhhcccccc
Confidence 44667777777765543
No 282
>cd01784 rasfadin_RA Ubiquitin-like domain of Rasfadin. rasfadin_RA Rasfadin (RASSF2) belongs to a family of Ras effectors/tumor suppressors that includes RASSF1 and NORE1. RASSF2 binds directly to K-Ras in a GTP-dependent manner via its RA (RAS-associated) domain. RASSF2 promotes apoptosis and cell cycle arrest and is frequently down-regulated in lung tumor cell lines
Probab=95.60 E-value=0.03 Score=49.10 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=41.4
Q ss_pred EEEEecC-CcEEEEEeccccCHHHHHHHHHHHhCCC-CCCceEEEEEe
Q 000820 285 TIVFFLD-ETFEEISYDMATTVSDAVEELAGIIKLS-AHSSFSLFECR 330 (1268)
Q Consensus 285 ~~V~l~d-g~~~~v~vd~~tTv~ev~~~l~~~lgL~-~~~~F~L~~~~ 330 (1268)
..||+|. |+...|.|.|.+|+.||++.+.++..+. ++..|+||++.
T Consensus 4 TS~f~P~~gs~~~v~VsS~~tt~eVI~~LL~KFkv~~~p~~FALy~vh 51 (87)
T cd01784 4 TSVFTPAYGSVTNVRINSTMTTPQVLKLLLNKFKIENSAEEFALYIVH 51 (87)
T ss_pred ccEeCCCCCceeEEEEecCCCHHHHHHHHHHhccccCCHHHeEEEEEe
Confidence 3588998 9999999999999999999999999997 77789999863
No 283
>KOG4371 consensus Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain [Signal transduction mechanisms]
Probab=95.58 E-value=0.0059 Score=75.29 Aligned_cols=145 Identities=12% Similarity=0.012 Sum_probs=100.1
Q ss_pred HcCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHH
Q 000820 278 LTGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGD 357 (1268)
Q Consensus 278 ~~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D 357 (1268)
...+.-.+.+.+.+|......+.+.|.+.||..-. .+.+-|||.. ...+++.++|+.-.++.
T Consensus 33 ~~~~Q~~~l~~t~~~~S~~~e~s~~T~~hdv~~~~------~d~elfglA~------------~~r~ey~f~dp~~k~sk 94 (1332)
T KOG4371|consen 33 EDDNQDDALTSTSSGNSTQKESSPFTDFHDVPPPP------VDPELFGLAQ------------NRREEYSFEDPFLKESK 94 (1332)
T ss_pred ccCCCCceeEEeecCceeeeecccccccccCCCCC------Ccccccchhh------------hhcccccccChhhhhhh
Confidence 33445556677778877777887777777776432 4777899885 33566777776554444
Q ss_pred HHHHHHHhh---hcCCCceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhhhcCcc--cCChhhHHHHHHHHHHHH
Q 000820 358 LLAEFKAAK---DRSKGEILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDYVLGNY--PVGRDDAAQLSALQILVE 432 (1268)
Q Consensus 358 ~l~~~e~~~---~~~~~~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~l~G~~--~~~~e~a~~LAAL~~q~~ 432 (1268)
.-.+-.... .........+-|+||+++|++..-...++...+-+|.|++++++.--. +..++-+..+|+|++|.+
T Consensus 95 yg~k~~r~s~~h~ld~~~rp~l~l~frv~~yi~~~~~l~~~~~r~~yylql~~n~l~~~apr~~~e~a~~~~a~lalq~d 174 (1332)
T KOG4371|consen 95 YGGKGSRLSQSHRLDETFRPELSLEFRVSGYIRNNISLAASPGRKSYYLQLFTNTLAPVAPRPAPEKAAEEYARLALQND 174 (1332)
T ss_pred hcCCCCccccccccCccCCeeEEEEEEEEEeecCceeccCCCCccchhhhhhhhhhccccCCcchHHHHHHHHhhhhcCc
Confidence 321100000 000111123679999999999999899999999999999999997544 577788899999999999
Q ss_pred hCCCCCCC
Q 000820 433 IGFVGSPE 440 (1268)
Q Consensus 433 ~Gd~~~~~ 440 (1268)
+|+...+.
T Consensus 175 ~g~~~~g~ 182 (1332)
T KOG4371|consen 175 FGEEEEGE 182 (1332)
T ss_pred cCcCCccc
Confidence 99766543
No 284
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=95.57 E-value=7 Score=46.30 Aligned_cols=13 Identities=23% Similarity=0.140 Sum_probs=5.9
Q ss_pred HHhhhcccccccc
Q 000820 878 LRKRYFNTIEDMK 890 (1268)
Q Consensus 878 ~r~kl~~~i~~~k 890 (1268)
...+|++.|.+.|
T Consensus 494 qi~kle~siq~nK 506 (531)
T PF15450_consen 494 QIMKLENSIQTNK 506 (531)
T ss_pred HHHHHHHHHHHHH
Confidence 3344555544433
No 285
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=95.57 E-value=2.6 Score=51.40 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=10.8
Q ss_pred ccccccceeeecccCCC
Q 000820 887 EDMKGKIRVYCRLRPLN 903 (1268)
Q Consensus 887 ~~~k~~i~~~~RvRp~~ 903 (1268)
.--.+++||+-+--|+.
T Consensus 404 ~~~~~n~rvIs~A~~P~ 420 (458)
T COG3206 404 ASPIGNARVISPAVPPL 420 (458)
T ss_pred cCCCCceeEeccccCCC
Confidence 34456788877766643
No 286
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.56 E-value=0.49 Score=45.42 Aligned_cols=14 Identities=29% Similarity=0.449 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHHH
Q 000820 654 RQEAKMQEELDDLK 667 (1268)
Q Consensus 654 ~e~~~l~~el~~l~ 667 (1268)
..+..++.++..++
T Consensus 23 s~lr~~E~E~~~l~ 36 (120)
T PF12325_consen 23 SQLRRLEGELASLQ 36 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 287
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=95.51 E-value=4.7 Score=43.82 Aligned_cols=39 Identities=5% Similarity=-0.054 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000820 677 LAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKL 715 (1268)
Q Consensus 677 l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l 715 (1268)
-..+..+.+.....++........+.+.+..++..+...
T Consensus 72 a~~aq~e~q~Aa~~yerA~~~h~aAKe~v~laEq~l~~~ 110 (239)
T PF05276_consen 72 AKEAQQEAQKAALQYERANSMHAAAKEMVALAEQSLMSD 110 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344455555555555555555556655555555555443
No 288
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.49 E-value=6.4 Score=45.29 Aligned_cols=14 Identities=7% Similarity=-0.159 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHh
Q 000820 463 KREWELDILSRYRS 476 (1268)
Q Consensus 463 ~~~w~~~I~~~~~~ 476 (1268)
.......+.+.+-.
T Consensus 54 ~~~l~~r~n~~~~~ 67 (446)
T KOG4438|consen 54 EEELLQRDNEALEQ 67 (446)
T ss_pred HHHHhhhhHHHHhc
Confidence 33444444444433
No 289
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=95.39 E-value=3.8 Score=44.58 Aligned_cols=40 Identities=18% Similarity=0.250 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 735 TLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKL 774 (1268)
Q Consensus 735 ~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~l 774 (1268)
.+..++..+......+..++..+..++..+..++.+...+
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l 138 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREEL 138 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333334444444444444444333333
No 290
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.31 E-value=0.9 Score=43.65 Aligned_cols=15 Identities=7% Similarity=0.388 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHhhHH
Q 000820 822 SRNMDLAGLESHLKE 836 (1268)
Q Consensus 822 ~l~~~~~~l~~~~~~ 836 (1268)
+...+.++++..+..
T Consensus 93 EK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 93 EKSEEVEELRADVQD 107 (120)
T ss_pred chHHHHHHHHHHHHH
Confidence 333333333333333
No 291
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=95.29 E-value=0.33 Score=55.44 Aligned_cols=6 Identities=50% Similarity=0.922 Sum_probs=2.2
Q ss_pred ecccCC
Q 000820 897 CRLRPL 902 (1268)
Q Consensus 897 ~RvRp~ 902 (1268)
.|+.|+
T Consensus 196 y~l~P~ 201 (314)
T PF04111_consen 196 YRLVPM 201 (314)
T ss_dssp EEEE--
T ss_pred ceeEec
Confidence 455564
No 292
>PF13166 AAA_13: AAA domain
Probab=95.24 E-value=5.2 Score=52.03 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.2
Q ss_pred CHHHHHHHHH
Q 000820 304 TVSDAVEELA 313 (1268)
Q Consensus 304 Tv~ev~~~l~ 313 (1268)
|...++..+|
T Consensus 31 tlsr~l~~~~ 40 (712)
T PF13166_consen 31 TLSRILKSLC 40 (712)
T ss_pred HHHHHHHHHh
Confidence 3344444444
No 293
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=95.21 E-value=0.063 Score=48.79 Aligned_cols=75 Identities=13% Similarity=0.273 Sum_probs=50.7
Q ss_pred HHHhhhhhhcCc--ccCChhhHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCC
Q 000820 402 YVQLQHDYVLGN--YPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEH 479 (1268)
Q Consensus 402 y~Q~~~d~l~G~--~~~~~e~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~ 479 (1268)
|..+..-|-... .+++.++-+.|=||.-|+..||++.+.. . +........| .+|+++.|
T Consensus 5 F~~A~~~v~~~~~~~~~~~~~~L~LYalyKQAt~Gd~~~~~P--~------------~~d~~~~~K~-----~AW~~l~g 65 (87)
T PF00887_consen 5 FEAAVEFVSNLPKKSQLSNDDKLELYALYKQATHGDCDTPRP--G------------FFDIEGRAKW-----DAWKALKG 65 (87)
T ss_dssp HHHHHHHHHHSSSCSTS-HHHHHHHHHHHHHHHTSS--S-CT--T------------TTCHHHHHHH-----HHHHTTTT
T ss_pred HHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCcCCCC--c------------chhHHHHHHH-----HHHHHccC
Confidence 444554454433 4899999999999999999998873221 1 1111222333 57999999
Q ss_pred CCHHHHHHHHHHHHhc
Q 000820 480 LTKDDARQQFLRILRT 495 (1268)
Q Consensus 480 ~s~~~A~~~fL~~~~~ 495 (1268)
||+.+|+..|++++..
T Consensus 66 ms~~eA~~~Yi~~v~~ 81 (87)
T PF00887_consen 66 MSKEEAMREYIELVEE 81 (87)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999874
No 294
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.20 E-value=12 Score=46.57 Aligned_cols=130 Identities=17% Similarity=0.107 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 640 RNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQK-------LAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKM 712 (1268)
Q Consensus 640 ~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~-------l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l 712 (1268)
..++++....+.+..++...+.++.++-..+...... -..+..++..+...++.+..+...-..++..+..++
T Consensus 54 ~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~~~~k~e~tLke~l~~l~~~le~lr~qk~eR~~ef~el~~qi 133 (660)
T KOG4302|consen 54 RKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGEISDKIEGTLKEQLESLKPYLEGLRKQKDERRAEFKELYHQI 133 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555554443322111 113444444444444444444444444444444444
Q ss_pred HHhhchhhhhH-----HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 713 AKLGNQESENN-----AEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQ 769 (1268)
Q Consensus 713 ~~l~~~~~~~~-----~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~ 769 (1268)
+.+-.++.+.. -..+...-..+.+++++.++..++++...-.+.+..+..++..+-.
T Consensus 134 e~l~~~l~g~~~~~~~~~~D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~~~~~I~~l~~ 195 (660)
T KOG4302|consen 134 EKLCEELGGPEDLPSFLIADESDLSLEKLEELREHLNELQKEKSDRLEKVLELKEEIKSLCS 195 (660)
T ss_pred HHHHHHhcCCccCCcccccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443322210 0111112222455666666666665555555555555555544443
No 295
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=95.12 E-value=0.045 Score=47.33 Aligned_cols=43 Identities=12% Similarity=0.126 Sum_probs=39.3
Q ss_pred EEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEE
Q 000820 285 TIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFE 328 (1268)
Q Consensus 285 ~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~ 328 (1268)
+.|++|||+...|.+.+..|+.|+++.+|++-||. +..+.+|.
T Consensus 2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~-~~~~~v~~ 44 (72)
T cd01760 2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN-PECCDVFL 44 (72)
T ss_pred EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC-HHHEEEEE
Confidence 78999999999999999999999999999999996 45677775
No 296
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=95.03 E-value=1.6 Score=48.49 Aligned_cols=27 Identities=7% Similarity=0.032 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000820 847 IDRKNEQTAAILKMQGAQLSELEVLYK 873 (1268)
Q Consensus 847 l~~~~~~~~~~~~~~~~~~~~L~~~~~ 873 (1268)
+.++...+.+......+....+.+.|.
T Consensus 133 l~~L~~~l~~~dv~~~ek~r~vlea~~ 159 (251)
T PF11932_consen 133 LARLRAMLDDADVSLAEKFRRVLEAYQ 159 (251)
T ss_pred HHHHHHhhhccCCCHHHHHHHHHHHHH
Confidence 333333333333333333444444443
No 297
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=95.00 E-value=7.2 Score=43.06 Aligned_cols=30 Identities=10% Similarity=0.151 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 680 VMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 680 l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
++.+++++..+++--..+...++.+.+.++
T Consensus 144 LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~ 173 (561)
T KOG1103|consen 144 LEKEREQLQQQIEFEIEEKKKAEIAKDKLE 173 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333333333333333333
No 298
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=95.00 E-value=2.4 Score=50.42 Aligned_cols=12 Identities=17% Similarity=0.213 Sum_probs=4.5
Q ss_pred CCCCHHHHHHHH
Q 000820 478 EHLTKDDARQQF 489 (1268)
Q Consensus 478 ~~~s~~~A~~~f 489 (1268)
.++++..-...+
T Consensus 185 k~~sk~y~~k~~ 196 (518)
T PF10212_consen 185 KDLSKHYNQKAS 196 (518)
T ss_pred HHHHHHHHHHHH
Confidence 333433333333
No 299
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.97 E-value=0.47 Score=54.23 Aligned_cols=11 Identities=27% Similarity=0.594 Sum_probs=6.2
Q ss_pred CCcccccccCC
Q 000820 977 SGKTFTIYGSE 987 (1268)
Q Consensus 977 sGKT~t~~G~~ 987 (1268)
.+.+|.++|+.
T Consensus 215 ~~~~~~ly~~~ 225 (314)
T PF04111_consen 215 DKTTYPLYSSG 225 (314)
T ss_dssp TCEEEESS--S
T ss_pred CCeEEecccCC
Confidence 56777777764
No 300
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=94.93 E-value=8.1 Score=45.95 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNADQLL 646 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~~l~ 646 (1268)
-+....++..|+.+++++..+++..+
T Consensus 89 ~Es~~~kl~RL~~Ev~EL~eEl~~~~ 114 (388)
T PF04912_consen 89 KESPEQKLQRLRREVEELKEELEKRK 114 (388)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566667777777777766666554
No 301
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=94.88 E-value=1.4 Score=48.62 Aligned_cols=12 Identities=25% Similarity=0.346 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000820 788 FEQERKALKLQV 799 (1268)
Q Consensus 788 le~ei~~l~~~i 799 (1268)
...+...|+.++
T Consensus 101 ke~Ea~~lq~el 112 (246)
T PF00769_consen 101 KEEEAEELQEEL 112 (246)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 302
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=94.86 E-value=0.098 Score=44.71 Aligned_cols=43 Identities=14% Similarity=0.168 Sum_probs=39.6
Q ss_pred EEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEE
Q 000820 285 TIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFE 328 (1268)
Q Consensus 285 ~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~ 328 (1268)
|+||+|||+.-.|.+-+..|+.|++..+|++-||. +....+|.
T Consensus 2 crV~LPdg~~T~V~vrpG~ti~d~L~kllekRgl~-~~~~~vf~ 44 (73)
T cd01817 2 CRVILPDGSTTVVPTRPGESIRDLLSGLCEKRGIN-YAAVDLFL 44 (73)
T ss_pred cEEECCCCCeEEEEecCCCCHHHHHHHHHHHcCCC-hhHEEEEE
Confidence 78999999999999999999999999999999997 56677885
No 303
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=94.85 E-value=9.8 Score=43.85 Aligned_cols=44 Identities=16% Similarity=-0.005 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccccccc
Q 000820 849 RKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGK 892 (1268)
Q Consensus 849 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~ 892 (1268)
....++......+...+.+.++.++.+...+.+|+.+|+-....
T Consensus 351 ~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~~~rLe~di~~k~ns 394 (421)
T KOG2685|consen 351 DEVHELDDTVAALKEKLDEAEDSLKLLVNHRARLERDIAIKANS 394 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33334444444455555555566666666666666666544433
No 304
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.84 E-value=7.1 Score=42.20 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 735 TLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 735 ~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
+...++..+..+...+.........++..+..++.++.+++.++
T Consensus 93 ~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~ 136 (225)
T COG1842 93 EKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKK 136 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444554555555555555554544444444444
No 305
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.84 E-value=7.2 Score=42.28 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 654 RQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKS 689 (1268)
Q Consensus 654 ~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~ 689 (1268)
.-+.+++..+..++..+.........++.++..+..
T Consensus 31 q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~ 66 (219)
T TIGR02977 31 LIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEA 66 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444443333333333333333333
No 306
>PTZ00458 acyl CoA binding protein; Provisional
Probab=94.76 E-value=0.12 Score=46.68 Aligned_cols=79 Identities=14% Similarity=0.216 Sum_probs=55.5
Q ss_pred HHHhhhhhhcCcc--cCChhhHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcCC
Q 000820 402 YVQLQHDYVLGNY--PVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSMEH 479 (1268)
Q Consensus 402 y~Q~~~d~l~G~~--~~~~e~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~~ 479 (1268)
|.++...|-.... +++.++..+|=||.-|+..|+++.+.. . +..-.....| .+|.++.|
T Consensus 5 F~~A~~~v~~~~~~~~~s~d~~L~lYalyKQAt~G~c~~~~P-------------~-~~d~~~raKw-----~AW~~l~~ 65 (90)
T PTZ00458 5 FEECVSFINSLPKTVNLSVEIKLDLYKYYKQSTVGNCNIKEP-------------S-MFKYQDRKKY-----EAWKSIEN 65 (90)
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHhhhccCCCCCCCC-------------C-cccHHHHHHH-----HHHHHcCC
Confidence 5666666654333 678899999999999999998865321 1 1111122233 37999999
Q ss_pred CCHHHHHHHHHHHHhcC-CCC
Q 000820 480 LTKDDARQQFLRILRTL-PYG 499 (1268)
Q Consensus 480 ~s~~~A~~~fL~~~~~~-p~f 499 (1268)
|++++|+..|++++..+ |-+
T Consensus 66 ms~~eA~~~YI~l~~~l~~~w 86 (90)
T PTZ00458 66 LNREDAKKRYVEIVTELFPNW 86 (90)
T ss_pred CCHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999865 433
No 307
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=94.61 E-value=5.9 Score=40.20 Aligned_cols=69 Identities=17% Similarity=0.302 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 628 IQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDT 696 (1268)
Q Consensus 628 l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~ 696 (1268)
+.+|-...+.-....+.+...+..+..++..+...++.++.+++..+.++...+.....+..++..+..
T Consensus 40 i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~ 108 (151)
T PF11559_consen 40 IYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEA 108 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333433333333334444444444444444444444444444444444444444444444433333333
No 308
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.60 E-value=2 Score=49.51 Aligned_cols=20 Identities=15% Similarity=0.024 Sum_probs=14.5
Q ss_pred EEEeccccCHHHHHHHHHHH
Q 000820 296 EISYDMATTVSDAVEELAGI 315 (1268)
Q Consensus 296 ~v~vd~~tTv~ev~~~l~~~ 315 (1268)
.+.|-...|+.|++.-++..
T Consensus 79 ilaVP~~mt~~Dll~F~~~~ 98 (493)
T KOG0804|consen 79 ILAVPAYMTSHDLLRFCASF 98 (493)
T ss_pred EEeccccccHHHHHHHHHHH
Confidence 45666778888888887743
No 309
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=94.58 E-value=0.18 Score=45.55 Aligned_cols=68 Identities=22% Similarity=0.163 Sum_probs=56.6
Q ss_pred cceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHH
Q 000820 282 KLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAE 361 (1268)
Q Consensus 282 ~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~ 361 (1268)
+..++||-.||++.++.+...|||.|++..+.++..|.+...|-|+.. .++..+.|.+.+.-+.+...
T Consensus 2 ~y~IRIFr~D~Tf~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~------------~~~l~RvL~p~ErPl~Iqkr 69 (97)
T cd01775 2 SYCIRVFRSDGTFTTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLK------------KHDLSRVLRPTEKPLLIQKR 69 (97)
T ss_pred ceEEEEEecCCcEEEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEE------------ECCeeeecCCcCCcHHHHHH
Confidence 467899999999999999999999999999999999998889999963 24455667777776666543
No 310
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=94.56 E-value=2.9 Score=52.66 Aligned_cols=15 Identities=13% Similarity=0.390 Sum_probs=7.4
Q ss_pred CCChhhHHhc-HHHHH
Q 000820 944 YATQEDVFED-TRYLV 958 (1268)
Q Consensus 944 ~~~q~~v~~~-~~~~v 958 (1268)
.++=-+||.. +.+++
T Consensus 444 ~~s~~EIYNe~i~DlL 459 (670)
T KOG0239|consen 444 TVSMLEIYNEAIRDLL 459 (670)
T ss_pred eeehhHHHHHHHHHhc
Confidence 4444556654 35444
No 311
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=94.54 E-value=16 Score=44.74 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 651 ERQRQEAKMQEELDDLKDSLRFEKQ 675 (1268)
Q Consensus 651 ~l~~e~~~l~~el~~l~~~l~~~~~ 675 (1268)
..+.....+..++..++..+...+.
T Consensus 192 ~~~~~~~~l~~~l~~lr~~~~~ae~ 216 (458)
T COG3206 192 AFRRASDSLDERLEELRARLQEAEA 216 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 312
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=94.52 E-value=8.4 Score=41.63 Aligned_cols=36 Identities=11% Similarity=0.151 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 652 RQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRL 687 (1268)
Q Consensus 652 l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l 687 (1268)
+...+.+++.++..++..+.+.......++.+++.+
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~ 64 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEA 64 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444433333333333333333333333
No 313
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=94.52 E-value=5.2 Score=50.70 Aligned_cols=20 Identities=5% Similarity=0.126 Sum_probs=11.5
Q ss_pred ChHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQ 639 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~ 639 (1268)
.+...+.+++.|+.++....
T Consensus 331 ~~~~lK~ql~~l~~ell~~~ 350 (913)
T KOG0244|consen 331 EMLKLKAQLEPLQVELLSKA 350 (913)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44556666666666655443
No 314
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.45 E-value=16 Score=44.66 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDL 666 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l 666 (1268)
++..|.+....+....+-+..++...+.+..+++++++.+
T Consensus 617 Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al 656 (1104)
T COG4913 617 KVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANAL 656 (1104)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444444444444444444444444444433
No 315
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.41 E-value=29 Score=47.27 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=6.8
Q ss_pred CChHHHHHHHHHHHHH
Q 000820 1221 VSSKEVARLKRLVAYW 1236 (1268)
Q Consensus 1221 ~~~~~~~~l~~~~~~~ 1236 (1268)
.++.....+...+..+
T Consensus 991 LD~~~~~~~~~~l~~l 1006 (1042)
T TIGR00618 991 LDEDSLDRAIGILDAI 1006 (1042)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3444444444444433
No 316
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=94.40 E-value=3.5 Score=47.92 Aligned_cols=9 Identities=33% Similarity=0.257 Sum_probs=6.0
Q ss_pred HHHHHHHHH
Q 000820 422 AQLSALQIL 430 (1268)
Q Consensus 422 ~~LAAL~~q 430 (1268)
+.|||+.+.
T Consensus 46 ~~L~~WL~~ 54 (359)
T PF10498_consen 46 TSLCAWLIS 54 (359)
T ss_pred HHHHHHHHH
Confidence 566777666
No 317
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.37 E-value=17 Score=44.52 Aligned_cols=10 Identities=10% Similarity=0.295 Sum_probs=5.7
Q ss_pred HHHhhhhhhc
Q 000820 402 YVQLQHDYVL 411 (1268)
Q Consensus 402 y~Q~~~d~l~ 411 (1268)
-.|+++|+..
T Consensus 449 ~l~vR~~LC~ 458 (1104)
T COG4913 449 LLQVRENLCQ 458 (1104)
T ss_pred HHHHHHHHHH
Confidence 3466666654
No 318
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=94.37 E-value=2.3 Score=39.18 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 660 QEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQ 699 (1268)
Q Consensus 660 ~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~ 699 (1268)
..+.+.++..+..+..+.......+..++.++.++...++
T Consensus 36 ~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 36 AKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333444444444444444333333
No 319
>smart00455 RBD Raf-like Ras-binding domain.
Probab=94.36 E-value=0.066 Score=46.20 Aligned_cols=43 Identities=16% Similarity=0.036 Sum_probs=39.6
Q ss_pred EEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEE
Q 000820 285 TIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFE 328 (1268)
Q Consensus 285 ~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~ 328 (1268)
+.|++|||+...|.+.+..|+.|+++.+|++-|| +.....+|.
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~ 44 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRL 44 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEE
Confidence 6899999999999999999999999999999999 567778884
No 320
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.35 E-value=2.6 Score=48.52 Aligned_cols=8 Identities=0% Similarity=-0.085 Sum_probs=3.7
Q ss_pred eEEEEEec
Q 000820 519 RIVLGINK 526 (1268)
Q Consensus 519 ~v~LgIn~ 526 (1268)
++|+.+-.
T Consensus 239 ~LwicliC 246 (493)
T KOG0804|consen 239 DLWICLIC 246 (493)
T ss_pred cEEEEEEc
Confidence 45554433
No 321
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=94.25 E-value=0.048 Score=70.44 Aligned_cols=254 Identities=12% Similarity=0.064 Sum_probs=164.2
Q ss_pred HHHHHHhhhccCCCCCCCCHHHHHHHHcCCcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEee
Q 000820 252 TLNALKRSVKAGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRK 331 (1268)
Q Consensus 252 c~~~L~r~~~~g~R~~~Ps~~Ei~Ai~~~~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~ 331 (1268)
|...+.++..+|++..+|++.+.+|.....+....+.+.+|...+.+.+++++..|.+....+..+..+. |++|.--.
T Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~--~~~~~~~s 657 (1062)
T KOG4229|consen 580 SDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEVTLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDR--PSLFEELS 657 (1062)
T ss_pred ccchhhcccCCCCCccCCcchhhhhhcccccccchhhhccccccccccccccchHHHHHhhhccccccCC--hhhhcchh
Confidence 6667788888999999999999999998889999999999999999999999999999998888877644 36663110
Q ss_pred eecCCCCCCCCCCccccCCCcchHHHHHHHHHHhhhcC-CC-ceeeEEEEEEeeccCCcccCCCCchhhhhhHHHhhhhh
Q 000820 332 VVTGSKASDHDNEEYIGLDDNKYIGDLLAEFKAAKDRS-KG-EILHCKLTFKKKLFRESDEAISEPMFVQLSYVQLQHDY 409 (1268)
Q Consensus 332 ~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e~~~~~~-~~-~~~~~~l~fk~~~f~~~~~~~~d~~~~~l~y~Q~~~d~ 409 (1268)
.+ ..+....++.+.......... .. ....++++++...+.+++.... ....++|.+.+.-+
T Consensus 658 ~l---------------~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 720 (1062)
T KOG4229|consen 658 AL---------------ARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPG--RKTNLLYSEVVNGR 720 (1062)
T ss_pred hc---------------CCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCcc--ccccccchhhhccc
Confidence 00 111133344433222221111 11 1335778888888776665544 56788999999999
Q ss_pred hcCcccCChh-hHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcC-CCCHHHHHH
Q 000820 410 VLGNYPVGRD-DAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSME-HLTKDDARQ 487 (1268)
Q Consensus 410 l~G~~~~~~e-~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~-~~s~~~A~~ 487 (1268)
..|.|+|+.+ ++...++-++.++.| ...........+..++|.........+.|.+.+...|.+-. ...+.....
T Consensus 721 ~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~ 797 (1062)
T KOG4229|consen 721 KNSEYLCSPRPDLAERARVQLLEKNA---INMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQV 797 (1062)
T ss_pred ccccccCCCCHHHHHHHHHHHHhhcc---ccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccch
Confidence 9999999964 555555555444444 21112222345677777777666677889888888877643 111222223
Q ss_pred HHHHHH----hcCCCCCeeeEEEEeecCCCCCCCceEEEEEecCc
Q 000820 488 QFLRIL----RTLPYGNSVFFSVRKIDDPIGLLPGRIVLGINKRG 528 (1268)
Q Consensus 488 ~fL~~~----~~~p~fGs~~F~v~~~~~~~~~~p~~v~LgIn~~G 528 (1268)
.|.+.. -+||+|+..++.-....++ ...+..++..++..|
T Consensus 798 ~~~k~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~v~~~~~~t~ 841 (1062)
T KOG4229|consen 798 RKSKLESYLAIAKELFVRRFLENQKKIGL-RFPDNVVLRQVSYTG 841 (1062)
T ss_pred hhccchhhhhhhhHHHHHHHHHhhhhhcc-CCChHHHHHhhhchh
Confidence 333222 3789999888876333322 112234566677776
No 322
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.23 E-value=2.6 Score=50.58 Aligned_cols=29 Identities=14% Similarity=0.134 Sum_probs=14.4
Q ss_pred cceEEEEecCCcEEEEEeccccCHHHHHHHHH
Q 000820 282 KLTTIVFFLDETFEEISYDMATTVSDAVEELA 313 (1268)
Q Consensus 282 ~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~ 313 (1268)
|...-|.+-||.... -.. .|...++..+.
T Consensus 19 p~yAvv~~~dg~~~~--k~~-~s~~rllrli~ 47 (652)
T COG2433 19 PLYAVVILEDGEIVE--KGE-VSLRRLLRLIW 47 (652)
T ss_pred cceeEEEEecCcEEe--ehh-hhHHHHHHHHH
Confidence 344455556665422 222 46666665554
No 323
>PF10480 ICAP-1_inte_bdg: Beta-1 integrin binding protein; InterPro: IPR019517 ICAP-1 is a serine/threonine-rich protein that binds to the cytoplasmic domains of beta-1 integrins in a highly specific manner, binding to a NPXY sequence motif on the beta-1 integrin. The cytoplasmic domains of integrins are essential for cell adhesion, and the fact that phosphorylation of ICAP-1 by interaction with the cell-matrix implies an important role of ICAP-1 during integrin-dependent cell adhesion []. Over expression of ICAP-1 strongly reduces the integrin-mediated cell spreading on extracellular matrix and inhibits both Cdc42 and Rac1. In addition, ICAP-1 induces release of Cdc42 from cellular membranes and prevents the dissociation of GDP from this GTPase []. An additional function of ICAP-1 is to promote differentiation of osteoprogenitors by supporting their condensation through modulating the integrin high affinity state [].
Probab=94.18 E-value=0.46 Score=48.16 Aligned_cols=94 Identities=17% Similarity=0.399 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcC---CCCCeeeEEEEeecCCCCCCCceEEEEEecCceEEECCCccchhccccccceeec-----cCCCC
Q 000820 485 ARQQFLRILRTL---PYGNSVFFSVRKIDDPIGLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQF-----GSSNS 556 (1268)
Q Consensus 485 A~~~fL~~~~~~---p~fGs~~F~v~~~~~~~~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~-----~~~~~ 556 (1268)
-.+.+|+.+++| |+-+ ...+++|+|.++||.+.+.+...+++.+|+-+|... +.+..
T Consensus 87 ~lI~~ID~aQq~GkLP~v~---------------~~eevil~VSKyGiKvt~~d~~~VL~RhpL~~Ivr~V~YdDGlG~g 151 (200)
T PF10480_consen 87 ELINYIDSAQQDGKLPFVP---------------SDEEVILSVSKYGIKVTDNDQRDVLHRHPLHEIVRMVCYDDGLGAG 151 (200)
T ss_pred HHHHHHHHHhhcCcCCCCC---------------CCCeEEEEEeeccEEEeecCCcceeeeeeeeeEEEEEEEecCcCCc
Confidence 356778888755 4422 123789999999999999999999999999999965 22222
Q ss_pred ceEEEEEEcCee----eEEEEEc---CcHHHHHHHHHHHHHHHH
Q 000820 557 AVFFKMRVAGVL----HIFQFET---KQGEEICVALQTHINDVM 593 (1268)
Q Consensus 557 ~~~~~i~~~~~~----~~~~feT---~q~~eI~~li~~yi~~~~ 593 (1268)
+..|.+.+++.. ..+.|++ .||.+||.++..-.+.++
T Consensus 152 ~~llAlK~~~~~~e~y~l~v~Qcss~~qA~~ICk~l~~aF~~v~ 195 (200)
T PF10480_consen 152 KNLLALKVGDERQEEYQLWVYQCSSDEQAQEICKVLGQAFDSVL 195 (200)
T ss_pred ceEEEEEccCCCcceEEEEEEEcCCHHHHHHHHHHHHHHHHHhh
Confidence 335555555432 3455555 389999999998877544
No 324
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=94.14 E-value=10 Score=41.11 Aligned_cols=7 Identities=14% Similarity=0.021 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000820 669 SLRFEKQ 675 (1268)
Q Consensus 669 ~l~~~~~ 675 (1268)
.+.+.+.
T Consensus 39 ~l~~ar~ 45 (219)
T TIGR02977 39 TLVEVRT 45 (219)
T ss_pred HHHHHHH
Confidence 3333333
No 325
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=94.11 E-value=6 Score=48.85 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 777 KTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLES 832 (1268)
Q Consensus 777 ~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~ 832 (1268)
++++.....+.++-.++..+.+-.-|.-.+.....|+.+++.-...++..+..+-.
T Consensus 502 ev~eal~~~k~~q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 502 EVEEALVNVKSLQFKLEASEKENQILGITLRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHhhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33333333333333444444444444444444455555555555555555444444
No 326
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=3.8 Score=49.24 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=10.0
Q ss_pred CChhhHHHHHHHHHHHHhC
Q 000820 416 VGRDDAAQLSALQILVEIG 434 (1268)
Q Consensus 416 ~~~e~a~~LAAL~~q~~~G 434 (1268)
.++.+-+.++|+.+---.|
T Consensus 110 ~~P~eeA~~~A~LA~~GvG 128 (652)
T COG2433 110 LNPYEEAYACARLASKGVG 128 (652)
T ss_pred CChHHHHHHHHHHHhcCCC
Confidence 4555666666654333334
No 327
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=93.90 E-value=8.2 Score=39.14 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 742 ELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSE 801 (1268)
Q Consensus 742 el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~ 801 (1268)
++..++++-..+..+...|+..+..+...++..+.-...+.--+.=+...+..+...+++
T Consensus 92 ~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~~~~e~ 151 (159)
T PF05384_consen 92 RLAMLREREKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVSEQIED 151 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333334444444444444444444444444444444433333333333333333333
No 328
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=93.89 E-value=8.6 Score=39.35 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 753 EKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 753 ~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
++.+...|...-...+.++..|++++
T Consensus 125 LE~E~~rLt~~Q~~ae~Ki~~LE~KL 150 (178)
T PF14073_consen 125 LEKEYLRLTATQSLAETKIKELEEKL 150 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444
No 329
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=93.87 E-value=15 Score=43.80 Aligned_cols=15 Identities=13% Similarity=0.547 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEES 638 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~ 638 (1268)
++.++++|..+++..
T Consensus 99 L~~Ev~EL~eEl~~~ 113 (388)
T PF04912_consen 99 LRREVEELKEELEKR 113 (388)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 330
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=93.86 E-value=0.11 Score=60.85 Aligned_cols=91 Identities=22% Similarity=0.231 Sum_probs=59.6
Q ss_pred eeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCcccccccC---CCCCCCc----HHHHHHHHHHHHh
Q 000820 934 QHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGS---ECNPGIT----PRAISELFRILKK 1006 (1268)
Q Consensus 934 ~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~---~~~~Gli----~r~~~~lf~~~~~ 1006 (1268)
.|....-|.|.-.|- +.+..+|+.+-.|.-.- ...|.|||||||||-.- -.-|-|| --...+||+..+.
T Consensus 4 ~F~l~s~f~PaGDQP---~AI~~Lv~gi~~g~~~Q-tLLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk~ 79 (663)
T COG0556 4 PFKLHSPFKPAGDQP---EAIAELVEGIENGLKHQ-TLLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFKE 79 (663)
T ss_pred ceEeccCCCCCCCcH---HHHHHHHHHHhcCceee-EEeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHHH
Confidence 466666777777775 23566777766665544 44699999999999652 1112222 1235667777776
Q ss_pred cCCceEEEEEEEeeeecccccc
Q 000820 1007 ENNKFSFSLKAYMVELYQDTLV 1028 (1268)
Q Consensus 1007 ~~~~~~~~v~~s~~eiy~e~v~ 1028 (1268)
--....+...|||+.-|+-.-|
T Consensus 80 fFP~NaVEYFVSYYDYYQPEAY 101 (663)
T COG0556 80 FFPENAVEYFVSYYDYYQPEAY 101 (663)
T ss_pred hCcCcceEEEeeeccccCcccc
Confidence 5555578889999998875543
No 331
>PRK10698 phage shock protein PspA; Provisional
Probab=93.84 E-value=12 Score=40.68 Aligned_cols=39 Identities=5% Similarity=0.026 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 654 RQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCD 692 (1268)
Q Consensus 654 ~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~ 692 (1268)
.-+.+++..+..++..+.........++.++..+.....
T Consensus 31 q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~ 69 (222)
T PRK10698 31 LMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQV 69 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444333333333333333333333
No 332
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=93.83 E-value=19 Score=43.19 Aligned_cols=15 Identities=27% Similarity=0.208 Sum_probs=6.9
Q ss_pred eccccCHHHHHHHHH
Q 000820 299 YDMATTVSDAVEELA 313 (1268)
Q Consensus 299 vd~~tTv~ev~~~l~ 313 (1268)
+++.+|-.+|...++
T Consensus 57 F~pnatQe~Vy~~~a 71 (607)
T KOG0240|consen 57 FSPNATQEDVYEFAA 71 (607)
T ss_pred cCCCccHHHHHHHHH
Confidence 344444444444444
No 333
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=25 Score=44.39 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 650 HERQRQEAKMQEELDDLKDSLRFEKQKLAEVMAD 683 (1268)
Q Consensus 650 ~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e 683 (1268)
..+...+..++...+.++.++...+........+
T Consensus 560 ~~~r~~ld~leaa~e~lE~r~~~~e~~~~e~~se 593 (984)
T COG4717 560 QQLRKALDQLEAAYEALEGRFAAAEAAMAEWQSE 593 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3333333333333333333333333333333333
No 334
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.82 E-value=7.7 Score=45.74 Aligned_cols=10 Identities=20% Similarity=-0.034 Sum_probs=5.4
Q ss_pred CCHHHHHHHH
Q 000820 269 PGREEIEALL 278 (1268)
Q Consensus 269 Ps~~Ei~Ai~ 278 (1268)
|+..+++++.
T Consensus 237 ~~V~~~Esv~ 246 (741)
T KOG4460|consen 237 TAVLGEEAVA 246 (741)
T ss_pred ccccCchhhc
Confidence 4555555554
No 335
>cd01783 DAGK_delta_RA Ubiquitin-like domain of Diacylgylcerol kinase (DAGK). DAGK_delta_RA Diacylgylcerol kinase (DAGK) phosphorylates the second messenger diacylglycerol to phosphatidic acid as part of a protein kinase C pathway. Nine mammalian DAGK isotypes have been identified, which are classified into five subgroups according to their domain architecture and the DAGK-delta and -theta isozymes, which fall into one such group, contain an RA (Ras-associated) domain. DAGKs also contain a conserved catalytic domain (DAGKc), an assesory domain (DAGKa), and an array of conserved motifs that are likely to play a role in lipid-protein and protein-protein interactions in various DAG/PA-dependent signalling pathways.
Probab=93.78 E-value=0.55 Score=42.75 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=52.4
Q ss_pred CCcEEEEEeccccCHHHHHHHHHHHhCCC--CCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHHHHHh
Q 000820 291 DETFEEISYDMATTVSDAVEELAGIIKLS--AHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAEFKAA 365 (1268)
Q Consensus 291 dg~~~~v~vd~~tTv~ev~~~l~~~lgL~--~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e~~ 365 (1268)
.-.++++.+++.||+.+|+.++..++|+. +.+.|.|-++.- ..+...+.+++++..+.++.+..+.
T Consensus 15 ~~~y~sv~V~~~tt~~dvv~eaL~kfGl~~~~~~~y~LvEV~l---------d~gv~ER~l~~~E~Pl~i~~~~r~~ 82 (97)
T cd01783 15 GVAYVSIRVNKDTTVQDVILEVLPLFGLQAECPESFRLIEVLL---------DRGVVERTVLPQEKPLQIRLQLRKD 82 (97)
T ss_pred CcceEEEEecccchHHHHHHHHHHHhCcccCCccccEEEEEEe---------cCCeeeeeCCCccChHHHHHHhhhh
Confidence 44577999999999999999999999997 667999998641 1233357788999888888776553
No 336
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.77 E-value=2.4 Score=47.69 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKR 706 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~ 706 (1268)
.+.++...+.+++.+...+.-...+|..+...+..+++.|++.+.+++..+..+..+..+...+++.+......+..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444455555555555555555555555555544444444444444444444444444444
Q ss_pred HHHHHH
Q 000820 707 SMEAKM 712 (1268)
Q Consensus 707 ~le~~l 712 (1268)
.+..++
T Consensus 158 ~Lre~L 163 (302)
T PF09738_consen 158 ELREQL 163 (302)
T ss_pred HHHHHH
Confidence 444433
No 337
>PRK10698 phage shock protein PspA; Provisional
Probab=93.74 E-value=12 Score=40.54 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 756 NVKKFLNEKVLLEQKISKL 774 (1268)
Q Consensus 756 ~~~~l~~el~~l~~~l~~l 774 (1268)
.+..++..+..++.++.+.
T Consensus 114 ~~~~L~~~l~~L~~ki~ea 132 (222)
T PRK10698 114 TLARMKKEIGELENKLSET 132 (222)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 338
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=93.58 E-value=27 Score=44.07 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 683 DHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAK 714 (1268)
Q Consensus 683 e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~ 714 (1268)
++.++.....++..+.+.+.++....+.....
T Consensus 621 d~~~~~q~~~EL~~q~~~L~ee~~af~~~v~~ 652 (984)
T COG4717 621 DLKKLMQKKAELTHQVARLREEQAAFEERVEG 652 (984)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555555554444444433
No 339
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=93.54 E-value=16 Score=41.24 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=17.5
Q ss_pred HHHHhHHHHHHHhhhcccccccccccee
Q 000820 868 LEVLYKEEQILRKRYFNTIEDMKGKIRV 895 (1268)
Q Consensus 868 L~~~~~~~~~~r~kl~~~i~~~k~~i~~ 895 (1268)
..+-|.++...+.+-..+|..++..++.
T Consensus 549 YkDiYtELSiaKakadcdIsrLKEqLka 576 (593)
T KOG4807|consen 549 YKDIYTELSIAKAKADCDISRLKEQLKA 576 (593)
T ss_pred hhHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 3445566666677777777666665544
No 340
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.52 E-value=0.72 Score=47.53 Aligned_cols=69 Identities=19% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 645 LLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMA 713 (1268)
Q Consensus 645 l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~ 713 (1268)
+++.+.+++.+++++..+.+.+...+.+++.++++.+.++..++.+...++..+..+..+...|+.+.+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 333333333333333334333333333333333344333443433333333333333333333333333
No 341
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=93.48 E-value=0.43 Score=47.72 Aligned_cols=79 Identities=24% Similarity=0.374 Sum_probs=60.2
Q ss_pred CCceEEEEEecCceEEECCCccchhccccccceeeccC-CCC---ceEEEEEEcCee----eEEEEEcCcHHHHHHHHHH
Q 000820 516 LPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGS-SNS---AVFFKMRVAGVL----HIFQFETKQGEEICVALQT 587 (1268)
Q Consensus 516 ~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~-~~~---~~~~~i~~~~~~----~~~~feT~q~~eI~~li~~ 587 (1268)
.+.+++|.|+..||.++++.+++++..+|+..|.-++. ..+ .|-|....+... ++|.+.+ +|.+|+..|..
T Consensus 50 ~~~~V~l~vs~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~~~~~Fafi~~~~~~~~~~CHVF~~~~-~A~~i~~~i~~ 128 (140)
T PF00640_consen 50 KPQKVTLNVSSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPDDKRVFAFIARDPRSSRFYCHVFKCED-QAQEICQAIGQ 128 (140)
T ss_dssp TSEEEEEEEETTEEEEEETTTTCEEEEEEGGGEEEEEESSTTETTEEEEEEEETSSSCEEEEEEEESS-CHHHHHHHHHH
T ss_pred cCeEEEEEEcCCeEEEecCccccccccCCccceEEEEecCCCcceEEEEEeccCCCCccccEeeeHhh-HHHHHHHHHHH
Confidence 56689999999999999999999999999999988776 222 333433444333 6777777 89999999988
Q ss_pred HHHHHHHH
Q 000820 588 HINDVMLR 595 (1268)
Q Consensus 588 yi~~~~~~ 595 (1268)
-.+..+++
T Consensus 129 aF~~a~~~ 136 (140)
T PF00640_consen 129 AFELAYQE 136 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77744443
No 342
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.45 E-value=26 Score=43.55 Aligned_cols=45 Identities=20% Similarity=0.143 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 757 VKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSE 801 (1268)
Q Consensus 757 ~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~ 801 (1268)
--.|+.++.+....++.++.+.+++.+.++...++-+.+...+.+
T Consensus 436 N~~Lq~ql~es~k~~e~lq~kneellk~~e~q~~Enk~~~~~~~e 480 (861)
T PF15254_consen 436 NMSLQNQLQESLKSQELLQSKNEELLKVIENQKEENKRLRKMFQE 480 (861)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444433333
No 343
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=93.30 E-value=13 Score=39.74 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 793 KALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGL 830 (1268)
Q Consensus 793 ~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l 830 (1268)
+.++.+...|.-.+...-.+.+++--+.+..+-+...+
T Consensus 163 EgLkak~a~LafDLkamideKEELimERDa~kcKa~RL 200 (389)
T KOG4687|consen 163 EGLKAKCAGLAFDLKAMIDEKEELIMERDAMKCKAARL 200 (389)
T ss_pred HHHHHHhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444333333
No 344
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=93.15 E-value=9.4 Score=43.14 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=85.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQ 699 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~ 699 (1268)
++..++..+.+++......--...+|..+...+.-++.-|+..++++++.+.++..++.+...+++.++..+..+..++.
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~ 157 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELD 157 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999988888899999999999999999999999999999999999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 700 VVLLEKRSMEAKMAK 714 (1268)
Q Consensus 700 ~l~~e~~~le~~l~~ 714 (1268)
.+..++...+.-+.+
T Consensus 158 ~Lre~L~~rdeli~k 172 (302)
T PF09738_consen 158 ELREQLKQRDELIEK 172 (302)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888777665
No 345
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=93.12 E-value=3.7 Score=44.38 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000820 843 MKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILR 879 (1268)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r 879 (1268)
++..+.++..-+++...+++.+..+|+..++..+...
T Consensus 136 mrssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq 172 (305)
T PF15290_consen 136 MRSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQ 172 (305)
T ss_pred HHhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHH
Confidence 3444444455555555566666556665555554443
No 346
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.09 E-value=1.5 Score=46.70 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000820 626 KRIQDLSKTVEESQRNADQLL 646 (1268)
Q Consensus 626 ~~l~eL~~~l~e~~~~l~~l~ 646 (1268)
.++.++++++++++.+++++.
T Consensus 93 ~rlp~le~el~~l~~~l~~~~ 113 (206)
T PRK10884 93 TRVPDLENQVKTLTDKLNNID 113 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555544444444443
No 347
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=92.89 E-value=3.1 Score=44.97 Aligned_cols=40 Identities=8% Similarity=0.116 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 739 LQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 739 l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
.+.-+..++..++..+.++.+-+.+|.+|+.++.++++.+
T Consensus 66 KEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 66 KEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555555666666666666666666666666666655
No 348
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.81 E-value=5.7 Score=51.47 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHhcHHHHHHHHhc-ccceEEEeec-ccCCCccccc
Q 000820 950 VFEDTRYLVQSAVD-GYNVCIFAYG-QTGSGKTFTI 983 (1268)
Q Consensus 950 v~~~~~~~v~~~~~-G~n~~i~ayG-~tgsGKT~t~ 983 (1268)
-|..++.-+.-.+. +-.-+|...| ..|.|||++-
T Consensus 514 a~r~lrt~l~~~~~~~~~kvI~vtS~~~g~GKTtva 549 (726)
T PRK09841 514 AVRALRTSLHFAMMETENNILMITGATPDSGKTFVS 549 (726)
T ss_pred HHHHHHHHhhhhccCCCCeEEEEecCCCCCCHHHHH
Confidence 34444443333232 2333444444 4599999976
No 349
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.79 E-value=0.048 Score=59.25 Aligned_cols=49 Identities=24% Similarity=0.523 Sum_probs=31.8
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
..|+||..+.. .+++..|..+..+...--..+|. +|-||++|+||||.|
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL 51 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLL 51 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHH
Confidence 36899988764 44566666555555552223444 788999999999987
No 350
>PRK11519 tyrosine kinase; Provisional
Probab=92.58 E-value=7.9 Score=50.14 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=15.0
Q ss_pred eEEEEEcCcHHHHHHHHHHHHHHHHH
Q 000820 569 HIFQFETKQGEEICVALQTHINDVML 594 (1268)
Q Consensus 569 ~~~~feT~q~~eI~~li~~yi~~~~~ 594 (1268)
-.+.|..+.......+++.+++.++.
T Consensus 230 i~Is~~~~dP~~Aa~iaN~l~~~Yi~ 255 (719)
T PRK11519 230 LSLTYTGEDREQIRDILNSITRNYLE 255 (719)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 35667777666666555555554333
No 351
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.53 E-value=1.2 Score=45.97 Aligned_cols=9 Identities=11% Similarity=0.168 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 000820 581 ICVALQTHI 589 (1268)
Q Consensus 581 I~~li~~yi 589 (1268)
+..-+.+++
T Consensus 78 f~eeLrg~V 86 (290)
T COG4026 78 FFEELRGMV 86 (290)
T ss_pred HHHHHHHhh
Confidence 333344433
No 352
>COG5283 Phage-related tail protein [Function unknown]
Probab=92.42 E-value=42 Score=44.22 Aligned_cols=11 Identities=27% Similarity=0.531 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000820 794 ALKLQVSELER 804 (1268)
Q Consensus 794 ~l~~~i~~l~~ 804 (1268)
.+..++..+.+
T Consensus 131 ~~~~~is~t~k 141 (1213)
T COG5283 131 RLQYAISTLNK 141 (1213)
T ss_pred HHHHHHHhhhh
Confidence 33333333333
No 353
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.41 E-value=8.5 Score=42.76 Aligned_cols=13 Identities=23% Similarity=0.233 Sum_probs=6.0
Q ss_pred cccccceeeeccc
Q 000820 888 DMKGKIRVYCRLR 900 (1268)
Q Consensus 888 ~~k~~i~~~~RvR 900 (1268)
++-+.|.||-=.-
T Consensus 163 ~yg~~i~~~~~~i 175 (251)
T PF11932_consen 163 EYGRTIEVYQGTI 175 (251)
T ss_pred HhCCceeEEEEEE
Confidence 4444555554333
No 354
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=92.39 E-value=29 Score=41.18 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 629 QDLSKTVEESQRNADQLLEELHERQRQEAKM 659 (1268)
Q Consensus 629 ~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l 659 (1268)
.+|+..+.++..+++.+......++..+..+
T Consensus 60 ~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~ 90 (384)
T PF03148_consen 60 NELERELEELDEEIDLLEEEKRRLEKALEAL 90 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444444444444444433
No 355
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.35 E-value=29 Score=41.17 Aligned_cols=38 Identities=11% Similarity=0.212 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000820 678 AEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKL 715 (1268)
Q Consensus 678 ~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l 715 (1268)
..+++++..+++....+.+..+++.+..+.|...+.++
T Consensus 605 ~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L 642 (741)
T KOG4460|consen 605 SYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33333333333333334444444444444444444433
No 356
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=92.34 E-value=15 Score=42.86 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEEL 663 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el 663 (1268)
.+.+...+++.++.++...+-.+.+...+.+++..++
T Consensus 9 KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 9 KLKETEEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666666655555555555554444
No 357
>cd01782 AF6_RA_repeat1 Ubiquitin domain of AT-6, first repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=92.10 E-value=0.67 Score=42.55 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=37.6
Q ss_pred EEEEecCCc----EEEEEeccccCHHHHHHHHHHHhCCC----CCCceEEEEEe
Q 000820 285 TIVFFLDET----FEEISYDMATTVSDAVEELAGIIKLS----AHSSFSLFECR 330 (1268)
Q Consensus 285 ~~V~l~dg~----~~~v~vd~~tTv~ev~~~l~~~lgL~----~~~~F~L~~~~ 330 (1268)
.++||-|+. ++.|.|.|.+|+.||++.+.++..+. +...|+||++.
T Consensus 24 mrf~~qd~~~k~atK~VrVsS~~tt~eVI~~LLeKFk~d~~~~s~p~FALYevh 77 (112)
T cd01782 24 MRFYFQDGGEKVATKCIRVSSTATTRDVIDTLSEKFRPDMRMLSNPTYSLYEVH 77 (112)
T ss_pred EEEEEEcCCCcEEEEEEEEecCCCHHHHHHHHHHHhcccccccCCcceEEEEEe
Confidence 467888875 35699999999999999999999843 44589999864
No 358
>PRK12704 phosphodiesterase; Provisional
Probab=92.06 E-value=28 Score=42.96 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=8.6
Q ss_pred ccccCCCCChhhHHhcHHH
Q 000820 938 DQVFDGYATQEDVFEDTRY 956 (1268)
Q Consensus 938 d~vf~~~~~q~~v~~~~~~ 956 (1268)
|....| ..-++++..+..
T Consensus 276 dg~i~P-~~iee~~~~~~~ 293 (520)
T PRK12704 276 DGRIHP-ARIEEMVEKARK 293 (520)
T ss_pred cCCcCC-CCHHHHHHHHHH
Confidence 444443 244566655543
No 359
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=92.00 E-value=26 Score=39.89 Aligned_cols=66 Identities=17% Similarity=0.292 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHD 685 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~ 685 (1268)
+|-.++.+-......++.++.+-..+.+.++.-+++-++++.-.-.+++.........++.+..-+
T Consensus 126 SItSlKekt~~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtn 191 (558)
T PF15358_consen 126 SITSLKEKTSRVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTN 191 (558)
T ss_pred chhhHHHhhHHHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc
Confidence 555566666666666666666666666666666666665555555555444444444444433333
No 360
>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=91.98 E-value=0.75 Score=44.68 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=55.9
Q ss_pred ceEEEEEecCceEEECCCccchhccccccceeeccCCC--CceEEEEEEcCee---eEEEEEcCcHHHHHHHHHHHHHHH
Q 000820 518 GRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSN--SAVFFKMRVAGVL---HIFQFETKQGEEICVALQTHINDV 592 (1268)
Q Consensus 518 ~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~--~~~~~~i~~~~~~---~~~~feT~q~~eI~~li~~yi~~~ 592 (1268)
.++.|.|+..||.++||.++++++.+|...|.=|+.+. ..|-|..+.+... |.|..+ +.|.+|+..|..-....
T Consensus 40 ~~v~l~Vs~~~l~l~d~~t~~~l~~~~i~~Isf~~~gk~~r~FafI~~~~~~~~~CHVF~c~-~~a~~i~~tv~~ac~l~ 118 (123)
T cd01216 40 KDLNMDLAPSTLSLIDPDNLTVLHECRVRYLSFWGVGRDVRDFAFIMRTERRRFMCHVFRCE-PNAGALATTVEAACKLR 118 (123)
T ss_pred eEEEEEEecCcEEEEcCCCCeEEEEEEeeEEEEEEcCCCCcEEEEEEEcCCCeEEEEEEEcC-CCHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999998775543 3344555544422 344443 48999999988876644
Q ss_pred HH
Q 000820 593 ML 594 (1268)
Q Consensus 593 ~~ 594 (1268)
+.
T Consensus 119 y~ 120 (123)
T cd01216 119 YQ 120 (123)
T ss_pred hh
Confidence 44
No 361
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=91.98 E-value=39 Score=41.81 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 744 KICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASR 823 (1268)
Q Consensus 744 ~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l 823 (1268)
++++++-+.+......-++.++..-+++.+++..++++...+.+.+..+..++.-=.-+-..+....+++..++.+++.+
T Consensus 202 ~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l~~ae~~~~~w~pvgdl~idsl~~h~e~~~~~~~ei~p~ 281 (966)
T KOG4286|consen 202 EEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKLRQAEVIKGSWQPVGDLLIDSLQDHLEKVKALRGEIAPL 281 (966)
T ss_pred HHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccHHHHHHhHHHHHHHHHHHHHhhcchH
Confidence 34444444444444444555555555555555555555555555555555554322222223333333344444444433
Q ss_pred HHHHH---HHHHhhHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 824 NMDLA---GLESHLKELE-EL-REMKEDIDRKNEQTAAILKMQGAQLSELEVL 871 (1268)
Q Consensus 824 ~~~~~---~l~~~~~~l~-el-~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~ 871 (1268)
+.... ++..++..+. .+ ......++..+..+.-+......++..+++.
T Consensus 282 ~~~v~~vndla~ql~~~d~~ls~~~~~~le~~n~rwk~Lq~SV~~rl~qlrna 334 (966)
T KOG4286|consen 282 KENVSHVNDLARQLTTLDIQLSPYNLSTLEDLNTRWKLLQVSVPDRLTQLRNA 334 (966)
T ss_pred hhchhhHHHHHHHhhhcccCCChhhHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 2222222222 22 3345556666666666666666666555543
No 362
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.97 E-value=8.2 Score=44.17 Aligned_cols=29 Identities=14% Similarity=0.042 Sum_probs=18.9
Q ss_pred HHHhcccceEEEeecccCCCcccccccCC
Q 000820 959 QSAVDGYNVCIFAYGQTGSGKTFTIYGSE 987 (1268)
Q Consensus 959 ~~~~~G~n~~i~ayG~tgsGKT~t~~G~~ 987 (1268)
...|.|.++.|.+.--...||...--|++
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iAas~d 240 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIAASND 240 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEeecCC
Confidence 35677887777776666666666555544
No 363
>cd01785 PDZ_GEF_RA Ubiquitin-like domain of PDZ_GEF_RA. PDZ_GEF_RA PDZ-GEF is a guanine nucleotide exchange factor (GEF) characterised by the presence of a PSD-95/DlgA/ZO-1 (PDZ) domain, a Ras-association (RA) domain and a region related to a cyclic nucleotide binding domain (RCBD). RA-GEF exchanges nucleotides of both Rap1 and Rap2, but is also thought to mediate cAMP-induced Ras activation. The RA domain interacts with Rap1 and also contributes to the membrane localization of RA-GEF. This domain may function in a positive feedback loop.
Probab=91.97 E-value=0.67 Score=39.71 Aligned_cols=47 Identities=23% Similarity=0.189 Sum_probs=43.1
Q ss_pred eEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCC-CCCceEEEEEe
Q 000820 284 TTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLS-AHSSFSLFECR 330 (1268)
Q Consensus 284 ~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~-~~~~F~L~~~~ 330 (1268)
.++||-.|.+++-+.+...||+.||+.......||. ..+.|+|++|.
T Consensus 4 VlkvykaDQt~kyili~K~Tta~evv~lal~eFgi~~~s~~~sLceVt 51 (85)
T cd01785 4 VLKVYKADQTCKYLLIYKETTAHEVVMLALQEFGITAPSSNFSLCEVS 51 (85)
T ss_pred eEEEEecCcceeEEEEeccccHHHHHHHHHHHhCCCCCccceEEEEEE
Confidence 578999999999999999999999999999999998 45689999975
No 364
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.94 E-value=0.97 Score=59.27 Aligned_cols=43 Identities=23% Similarity=0.302 Sum_probs=28.0
Q ss_pred eccccCCCCChhhHHhcHHHHHHHHhcccc------eEEEeecccCCCccccc
Q 000820 937 YDQVFDGYATQEDVFEDTRYLVQSAVDGYN------VCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 937 fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n------~~i~ayG~tgsGKT~t~ 983 (1268)
+.+|+ .|...-..+...|..+..|.+ +.++-+|++|+|||++.
T Consensus 567 ~~~vi----GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 567 HHRVI----GQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred CCeEe----CCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 44555 455555555555555544433 57888899999999976
No 365
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=91.80 E-value=31 Score=42.51 Aligned_cols=7 Identities=29% Similarity=0.605 Sum_probs=3.1
Q ss_pred hhHHhcH
Q 000820 948 EDVFEDT 954 (1268)
Q Consensus 948 ~~v~~~~ 954 (1268)
+++|+.+
T Consensus 279 ee~~~~~ 285 (514)
T TIGR03319 279 EEMVEKA 285 (514)
T ss_pred HHHHHHH
Confidence 4444443
No 366
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=91.75 E-value=12 Score=42.78 Aligned_cols=10 Identities=40% Similarity=0.601 Sum_probs=4.2
Q ss_pred EEEEecCCCc
Q 000820 1115 LSFVDLAGSE 1124 (1268)
Q Consensus 1115 l~~vDLagse 1124 (1268)
|.++|+-+.|
T Consensus 365 l~viDlRt~e 374 (459)
T KOG0288|consen 365 LKVIDLRTKE 374 (459)
T ss_pred eeeeeccccc
Confidence 3444444443
No 367
>COG5283 Phage-related tail protein [Function unknown]
Probab=91.72 E-value=56 Score=43.09 Aligned_cols=85 Identities=14% Similarity=0.141 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQV 700 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~ 700 (1268)
+..++..+.+-.+....++++......-+..-...++.+.+.++..+..+++++++..++....+..+..+.++..+.-.
T Consensus 24 in~L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tq 103 (1213)
T COG5283 24 INVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQ 103 (1213)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544444444444444444444444444444444444444444444444444444444444444444333
Q ss_pred HHHHH
Q 000820 701 VLLEK 705 (1268)
Q Consensus 701 l~~e~ 705 (1268)
++..+
T Consensus 104 ae~~~ 108 (1213)
T COG5283 104 AENKL 108 (1213)
T ss_pred HHHHH
Confidence 33333
No 368
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=91.63 E-value=1 Score=44.22 Aligned_cols=74 Identities=20% Similarity=0.350 Sum_probs=54.0
Q ss_pred CCceEEEEEecCceEEECCCccchhccccccceeec----cCCCCceEEEEEEcCeee-EEEEEc-CcHHHHHHHHHHHH
Q 000820 516 LPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQF----GSSNSAVFFKMRVAGVLH-IFQFET-KQGEEICVALQTHI 589 (1268)
Q Consensus 516 ~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~----~~~~~~~~~~i~~~~~~~-~~~feT-~q~~eI~~li~~yi 589 (1268)
...+++|.|+.+||.++|+.|+..++.+|...| || ......|.+..+.++..| -|.|.| ..|++|...|..--
T Consensus 51 kk~kV~L~IS~dGi~v~D~~T~~ll~~~~i~rI-Sfca~D~~d~r~FsyI~~~~~~~H~f~~~k~~k~A~~i~lti~~aF 129 (139)
T cd01215 51 HKTRITLQINIDGIKVLDEKTGAVLHHHPVHRI-SFIARDSTDARAFGYVYGEPGGKHRFYGIKTAQAADQVVLAIRDLF 129 (139)
T ss_pred ccceEEEEEccCCEEEEcCCCCcEEEeeceeeE-EEEecCCCCCeEEEEEEEcCCCcEEEEEEEhHHcchhhhhhHHHHH
Confidence 455899999999999999999999999999998 45 233344445555534444 446677 56778887777655
Q ss_pred H
Q 000820 590 N 590 (1268)
Q Consensus 590 ~ 590 (1268)
+
T Consensus 130 ~ 130 (139)
T cd01215 130 Q 130 (139)
T ss_pred H
Confidence 5
No 369
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=91.60 E-value=4.7 Score=40.31 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000820 795 LKLQVSELERKLGEATLDLATLK 817 (1268)
Q Consensus 795 l~~~i~~l~~~l~~l~~el~~l~ 817 (1268)
++.+++.++..++.+..++..+.
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~ 121 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLA 121 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 370
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.57 E-value=9.7 Score=44.85 Aligned_cols=12 Identities=8% Similarity=-0.296 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 000820 421 AAQLSALQILVE 432 (1268)
Q Consensus 421 a~~LAAL~~q~~ 432 (1268)
.+.++.-..++-
T Consensus 139 ~~~~~~~~s~a~ 150 (508)
T KOG3091|consen 139 TIVAKWNQSQAG 150 (508)
T ss_pred cccccccccccc
Confidence 333333333333
No 371
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=91.41 E-value=45 Score=41.38 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=18.3
Q ss_pred hhhhHHHHHHHHHHHhhhccCCCCCCCCHHHHHHHH
Q 000820 243 SEVQTLALNTLNALKRSVKAGPRHTIPGREEIEALL 278 (1268)
Q Consensus 243 ~~~~~~a~~c~~~L~r~~~~g~R~~~Ps~~Ei~Ai~ 278 (1268)
..+..+...|...+++. .+|...|-..|.+...
T Consensus 315 adldgL~~kcfdkirqL---d~qia~pfiaecqqt~ 347 (1424)
T KOG4572|consen 315 ADLDGLPDKCFDKIRQL---DEQIAIPFIAECQQTH 347 (1424)
T ss_pred cchhhhhHHHHHHHHhh---chhhhhHHHHHHHHHH
Confidence 33455666666666542 4455566666665543
No 372
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.35 E-value=36 Score=40.13 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHhhch
Q 000820 698 LQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 698 l~~l~~e~~~le~~l~~l~~~ 718 (1268)
++.+..+.+.+++.++.++..
T Consensus 233 lq~~~~ehkllee~~~rl~~~ 253 (613)
T KOG0992|consen 233 LQALIREHKLLEEHLERLHLQ 253 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 373
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=91.33 E-value=27 Score=40.18 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=20.9
Q ss_pred HHHHHHHhc--CCCCHHHHHHHHHHHHhcCCCCCeeeEEEEeecCCCCCCCc
Q 000820 469 DILSRYRSM--EHLTKDDARQQFLRILRTLPYGNSVFFSVRKIDDPIGLLPG 518 (1268)
Q Consensus 469 ~I~~~~~~l--~~~s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~~~~~~p~ 518 (1268)
.+.++|+.- .+.|-++.-...++.+ .+|-|-- -|...+..+.. +|.
T Consensus 122 dLWeaW~~Sev~nWT~e~tvqWLi~~V-eLPqyve-~fk~~kv~G~a--lPR 169 (575)
T KOG4403|consen 122 DLWEAWKESEVHNWTNERTVQWLINDV-ELPQYVE-AFKAKKVDGKA--LPR 169 (575)
T ss_pred HHHHHHHhhhhhcchHHHHHHHHHHhc-ccHHHHH-HHHhccCCccc--ccc
Confidence 344445442 3555565554444443 4555532 33444444432 455
No 374
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=91.24 E-value=9.1 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.585 Sum_probs=14.4
Q ss_pred cCcHHHHHHHHHHHHHHHHHHH
Q 000820 575 TKQGEEICVALQTHINDVMLRR 596 (1268)
Q Consensus 575 T~q~~eI~~li~~yi~~~~~~r 596 (1268)
+.-|...|-++..-.+..+.+.
T Consensus 96 ~G~Ge~vc~VLd~Lad~AL~~~ 117 (359)
T PF10498_consen 96 QGSGEHVCYVLDQLADEALKRK 117 (359)
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 4456777777777777655553
No 375
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=91.22 E-value=0.35 Score=54.07 Aligned_cols=8 Identities=25% Similarity=0.488 Sum_probs=4.2
Q ss_pred EEEEEEEe
Q 000820 1012 SFSLKAYM 1019 (1268)
Q Consensus 1012 ~~~v~~s~ 1019 (1268)
.|-|.+||
T Consensus 273 sFpvdvsf 280 (326)
T PF04582_consen 273 SFPVDVSF 280 (326)
T ss_dssp -EEEEEEE
T ss_pred CCceEEEE
Confidence 45566665
No 376
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.20 E-value=4.4 Score=33.78 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 660 QEELDDLKDSLRFEKQKLAEVMADHDRLKS 689 (1268)
Q Consensus 660 ~~el~~l~~~l~~~~~~l~~l~~e~~~l~~ 689 (1268)
+-++++++++-..+.++..++...++.+..
T Consensus 24 QmEieELKEknn~l~~e~q~~q~~reaL~~ 53 (79)
T COG3074 24 QMEIEELKEKNNSLSQEVQNAQHQREALER 53 (79)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 377
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.18 E-value=0.24 Score=54.41 Aligned_cols=41 Identities=24% Similarity=0.377 Sum_probs=34.3
Q ss_pred HHHHHHHhcccceEEEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCC
Q 000820 955 RYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENN 1009 (1268)
Q Consensus 955 ~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~ 1009 (1268)
.+++..+.+--++.|+..|+||||||.|| ..+.+.+.+...
T Consensus 114 P~i~~~~~~~~~GLILVTGpTGSGKSTTl--------------AamId~iN~~~~ 154 (353)
T COG2805 114 PPIVRELAESPRGLILVTGPTGSGKSTTL--------------AAMIDYINKHKA 154 (353)
T ss_pred CHHHHHHHhCCCceEEEeCCCCCcHHHHH--------------HHHHHHHhccCC
Confidence 46888899999999999999999999998 566666665443
No 378
>PF14992 TMCO5: TMCO5 family
Probab=91.12 E-value=22 Score=39.30 Aligned_cols=21 Identities=19% Similarity=0.483 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000820 644 QLLEELHERQRQEAKMQEELD 664 (1268)
Q Consensus 644 ~l~~~l~~l~~e~~~l~~el~ 664 (1268)
.+-.++++.+..+..+..++.
T Consensus 22 ~lL~ki~~~E~~iq~Le~Eit 42 (280)
T PF14992_consen 22 SLLQKIQEKEGAIQSLEREIT 42 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444443
No 379
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=91.04 E-value=1.6 Score=40.10 Aligned_cols=73 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred cCCcEEEEEeccccCHHHHHHHHHHHhCCC--CCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHHHHHHHHH
Q 000820 290 LDETFEEISYDMATTVSDAVEELAGIIKLS--AHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIGDLLAEFK 363 (1268)
Q Consensus 290 ~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~--~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~D~l~~~e 363 (1268)
++-.+++|.+++.+|+.+|+.+...+.||. +++.|.|.++.-... ....+..+...+.+++++.-+.++..|.
T Consensus 13 ~~~~YKSIlvt~~~~a~~vV~eALeKygL~~e~p~~Y~LveV~~~~~-~~~~~~r~~~eRil~d~E~Pl~i~~~w~ 87 (100)
T cd01781 13 PTRPYKTILLSINDNADRIVGEALEKYGLEKSDPDDYCLVEVSNDDD-RKSSDLREIDERILDDDECPLFIMTAGP 87 (100)
T ss_pred CCCCeEEEEecCCccHHHHHHHHHHHhCCCccCccceEEEEEecccc-cccccccceeEEeCCCCcCHHHHHHhCC
Confidence 455688999999999999999999999997 577999998631111 1111123345688999999999998874
No 380
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.96 E-value=5.5 Score=34.58 Aligned_cols=51 Identities=22% Similarity=0.329 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 749 ELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQV 799 (1268)
Q Consensus 749 el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i 799 (1268)
.+..+-+.+..|+.++..++.+...+.++...+.....++.++...++..+
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334444444444443333333333333333333333333333333
No 381
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=90.92 E-value=24 Score=39.03 Aligned_cols=75 Identities=15% Similarity=0.307 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 790 QERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEEL-REMKEDIDRKNEQTAAILKMQGAQ 864 (1268)
Q Consensus 790 ~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el-~~~~~~l~~~~~~~~~~~~~~~~~ 864 (1268)
..+..+..+++..+..+..+..+-..+..+++....+++..+..++.|+.. =.-.++.++++.++.++....-..
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~k 244 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444555555555555555555555555555555555554422 122333444444444444333333
No 382
>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B.
Probab=90.67 E-value=0.75 Score=43.03 Aligned_cols=65 Identities=8% Similarity=0.113 Sum_probs=44.1
Q ss_pred eEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCC-CCceEEEEEeeeecCCCCCCCCCCccccCCCcchH
Q 000820 284 TTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSA-HSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYI 355 (1268)
Q Consensus 284 ~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~-~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i 355 (1268)
.+.|...||+++.|.|..++++.+|+..+.+++|+.+ ...|..|..+. .++.+....+|.+.+.+
T Consensus 2 vi~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~~~~~~~~~v~d~-------~~~~~~~~~~LsD~EL~ 67 (105)
T PF14847_consen 2 VIRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPEHPRNYCFYVLDG-------ESPDPSNCRPLSDVELV 67 (105)
T ss_dssp EEEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS--CCCEEEEEE-S------------SSEEEE-SSHHH
T ss_pred EEEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCccccccceEEEecc-------cccccccceECcHHHHH
Confidence 4678899999999999999999999999999999986 66788886442 22345667777776543
No 383
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=90.63 E-value=27 Score=37.52 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVM-----------ADHDRLK 688 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~-----------~e~~~l~ 688 (1268)
.+..++.+...+...+......+..+..+++..+.+...+....+.++-.++.++.+++-+- .+++.+-
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLa 89 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLA 89 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHH
Confidence 45555555555555555555555555555555555555555555555555555554443221 2334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhch
Q 000820 689 SLCDEKDTSLQVVLLEKRSMEAKMAKLGNQ 718 (1268)
Q Consensus 689 ~e~~~le~~l~~l~~e~~~le~~l~~l~~~ 718 (1268)
..+++...+...+..+.+.|..+..+++..
T Consensus 90 a~i~etkeeNlkLrTd~eaL~dq~adLhgD 119 (389)
T KOG4687|consen 90 ADIEETKEENLKLRTDREALLDQKADLHGD 119 (389)
T ss_pred HHHHHHHHHhHhhhHHHHHHHHHHHHHhch
Confidence 445555555555555555555555555544
No 384
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=90.56 E-value=0.49 Score=52.96 Aligned_cols=24 Identities=13% Similarity=0.284 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 789 EQERKALKLQVSELERKLGEATLD 812 (1268)
Q Consensus 789 e~ei~~l~~~i~~l~~~l~~l~~e 812 (1268)
+..+......|..|+.+++.++..
T Consensus 132 ksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 132 KSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhcchHhhHHHHHHHHhcC
Confidence 333333344444444444444443
No 385
>cd00934 PTB Phosphotyrosine-binding (PTB) domain. Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.
Probab=90.54 E-value=1 Score=43.74 Aligned_cols=74 Identities=26% Similarity=0.396 Sum_probs=54.9
Q ss_pred CCceEEEEEecCceEEECCCccchhccccccceeeccCC---CCceEEEEEEcCe-e---eEEEEEcCcHHHHHHHHHHH
Q 000820 516 LPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSS---NSAVFFKMRVAGV-L---HIFQFETKQGEEICVALQTH 588 (1268)
Q Consensus 516 ~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~---~~~~~~~i~~~~~-~---~~~~feT~q~~eI~~li~~y 588 (1268)
.+.+++|-|+..||.++++.+++.+..+|+..|.-++.. ++-|-|..+..+. . |.|.+... |..|+..|..-
T Consensus 40 ~~~~v~l~vs~~gv~l~d~~~~~~l~~~~l~~Is~~~~~~~~~~~F~~i~~~~~~~~~~CHvF~c~~~-a~~i~~~l~~a 118 (123)
T cd00934 40 KGQKVILSVSSDGVKLIDPKTKEVLASHPIRRISFCAADPDDLRIFAFIAREPGSSRFECHVFKCEKV-AEPIALTLGQA 118 (123)
T ss_pred CCCEEEEEEEcCcEEEEeCCCCcEEEeeccceEEEEECCCCCCcEEEEEEEcCCCCcEEEEEEEeCch-HHHHHHHHHHH
Confidence 466899999999999999999999999999999876544 2333344444431 1 67777777 88888877664
Q ss_pred HH
Q 000820 589 IN 590 (1268)
Q Consensus 589 i~ 590 (1268)
.+
T Consensus 119 f~ 120 (123)
T cd00934 119 FQ 120 (123)
T ss_pred HH
Confidence 43
No 386
>PRK06835 DNA replication protein DnaC; Validated
Probab=90.53 E-value=1.2 Score=51.30 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=25.2
Q ss_pred HHhcHHHHHHHHhcccceEEEeecccCCCcccccc
Q 000820 950 VFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 984 (1268)
Q Consensus 950 v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~ 984 (1268)
+++.+...|+.+-.+. ..++-||++|+||||.+.
T Consensus 168 ~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 168 ILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 4444455777766544 569999999999999874
No 387
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=90.41 E-value=42 Score=39.27 Aligned_cols=49 Identities=16% Similarity=0.093 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccc
Q 000820 843 MKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKG 891 (1268)
Q Consensus 843 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~ 891 (1268)
+.-.+.+.+....-..........+-...|++.+.++++...+|..|+.
T Consensus 432 llvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~kq 480 (488)
T PF06548_consen 432 LLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTMKQ 480 (488)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444445556677777777777777766654
No 388
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.41 E-value=48 Score=39.94 Aligned_cols=15 Identities=7% Similarity=0.330 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 765 VLLEQKISKLEKKTE 779 (1268)
Q Consensus 765 ~~l~~~l~~le~~~~ 779 (1268)
.-++.++...++++.
T Consensus 143 ~Pl~e~l~~f~~~v~ 157 (475)
T PRK10361 143 SPLREQLDGFRRQVQ 157 (475)
T ss_pred hhHHHHHHHHHHHHH
Confidence 334444444444443
No 389
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=90.38 E-value=1.1 Score=38.01 Aligned_cols=81 Identities=16% Similarity=0.242 Sum_probs=60.0
Q ss_pred hhhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhc
Q 000820 398 VQLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSM 477 (1268)
Q Consensus 398 ~~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l 477 (1268)
+...|.|+..||-.=.=..+.++..+|=||.-|...||.+.... .+..+.. .-. .++|..+
T Consensus 2 ~s~~Feqa~~dV~~L~~kP~~d~LLkLYAL~KQ~s~GD~~~ekP--G~~d~~g------------r~K-----~eAW~~L 62 (87)
T COG4281 2 LSTRFEQAQTDVKELSEKPSNDELLKLYALFKQGSVGDNDGEKP--GFFDIVG------------RYK-----YEAWAGL 62 (87)
T ss_pred hhhHHHHHHHHHHHhccCCCcHHHHHHHHHHHhccccccCCCCC--Ccccccc------------chh-----HHHHhhc
Confidence 34568999999987666677789999999999999998766432 1112111 112 2468899
Q ss_pred CCCCHHHHHHHHHHHHhcCC
Q 000820 478 EHLTKDDARQQFLRILRTLP 497 (1268)
Q Consensus 478 ~~~s~~~A~~~fL~~~~~~p 497 (1268)
.|.|+++|+..||.++..+.
T Consensus 63 KGksqedA~qeYialVeeLk 82 (87)
T COG4281 63 KGKSQEDARQEYIALVEELK 82 (87)
T ss_pred cCccHHHHHHHHHHHHHHHH
Confidence 99999999999999987653
No 390
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=90.20 E-value=16 Score=34.86 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLA-------------EVMADHDRLK 688 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~-------------~l~~e~~~l~ 688 (1268)
+..++.++..+.+|+....++..++.++......+..-..+++.....+.+.+.... -...++..+.
T Consensus 4 e~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~k~~~~~a~~P~~~~~~~wqlkvr~a~ 83 (136)
T PF11570_consen 4 EVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEIKQDEFFANNPPHEYGRGWQLKVRRAQ 83 (136)
T ss_dssp HHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTT-TTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcccccccCCCccccccHHHHHHHHHH
Confidence 455666677777777777777777777777777777777777777666666433221 1123344455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 689 SLCDEKDTSLQVVLLEKRSMEAKMA 713 (1268)
Q Consensus 689 ~e~~~le~~l~~l~~e~~~le~~l~ 713 (1268)
..+...+.++...+.++..+++++.
T Consensus 84 ~dv~nkq~~l~AA~~~l~~~~~el~ 108 (136)
T PF11570_consen 84 KDVQNKQNKLKAAQKELNAADEELN 108 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 5555555555555555555544443
No 391
>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain. PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.
Probab=90.16 E-value=1.7 Score=43.04 Aligned_cols=80 Identities=25% Similarity=0.366 Sum_probs=57.1
Q ss_pred CCceEEEEEecCceEEECCCccchhccccccceeeccCC---CCceEEEEEEcCee----eEEEEEcCcHHHHHHHHHHH
Q 000820 516 LPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSS---NSAVFFKMRVAGVL----HIFQFETKQGEEICVALQTH 588 (1268)
Q Consensus 516 ~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~---~~~~~~~i~~~~~~----~~~~feT~q~~eI~~li~~y 588 (1268)
.+.++.|.|+..||.+.+..++..+..+|+..|.-.+.. .+.|-|..+..+.. |.|..+.. +.+|+..|...
T Consensus 42 ~~~~v~l~vs~~gv~v~~~~~~~~l~~~~l~~Isf~~~~~~~~~~F~fI~~~~~~~~~~CHvF~c~~~-a~~i~~~i~~a 120 (134)
T smart00462 42 EPQKVILSISSRGVKLIDEDTKAVLHEHPLRRISFCAVGPDDLDVFGYIARDPGSSRFACHVFRCEKA-AEDIALAIGQA 120 (134)
T ss_pred CCCEEEEEEECCcEEEEECCCCeEEEEccccceEEEecCCCCCcEEEEEeeCCCCCeEEEEEEEcCch-HHHHHHHHHHH
Confidence 566899999999999999999999999999999655433 33333444444331 45666554 67888888887
Q ss_pred HHHHHHHH
Q 000820 589 INDVMLRR 596 (1268)
Q Consensus 589 i~~~~~~r 596 (1268)
....+...
T Consensus 121 F~~a~~~~ 128 (134)
T smart00462 121 FQLAYELK 128 (134)
T ss_pred HHHHHHHH
Confidence 77554443
No 392
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.16 E-value=25 Score=36.68 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=0.0
Q ss_pred EEcCcHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 000820 573 FETKQGEEICVALQTHINDVMLRRYSKARSAATGSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLL-EELHE 651 (1268)
Q Consensus 573 feT~q~~eI~~li~~yi~~~~~~r~~~~~~~~~gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~-~~l~~ 651 (1268)
|...||+-|..++..-++..+..-+..-.+.. ..++....++..+.+++.++.... .+...
T Consensus 16 ft~~QAe~i~~~l~~~l~~~~~~~~~~~vtk~------------------d~e~~~~~~~a~~~eLr~el~~~~k~~~~~ 77 (177)
T PF07798_consen 16 FTEEQAEAIMKALREVLNDSLEKVAQDLVTKS------------------DLENQEYLFKAAIAELRSELQNSRKSEFAE 77 (177)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
Q 000820 652 RQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLT 731 (1268)
Q Consensus 652 l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~ 731 (1268)
++.+...++.+++.+++++.+.-.++.. .-.-.+..+..+...+....+.++.+++.++.
T Consensus 78 lr~~~e~L~~eie~l~~~L~~ei~~l~a--~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~------------------ 137 (177)
T PF07798_consen 78 LRSENEKLQREIEKLRQELREEINKLRA--EVKLDLNLEKGRIREEQAKQELKIQELNNKID------------------ 137 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 000820 732 NNQTLHELQRELKICNEEL 750 (1268)
Q Consensus 732 ~~~~l~~l~~el~~l~~el 750 (1268)
.++..++.+++..+-++
T Consensus 138 --~ei~~lr~~iE~~K~~~ 154 (177)
T PF07798_consen 138 --TEIANLRTEIESLKWDT 154 (177)
T ss_pred --HHHHHHHHHHHHHHHHH
No 393
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=90.11 E-value=16 Score=42.37 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.9
Q ss_pred EEEEEEE
Q 000820 1012 SFSLKAY 1018 (1268)
Q Consensus 1012 ~~~v~~s 1018 (1268)
.|.|++.
T Consensus 300 ~~~v~i~ 306 (327)
T TIGR02971 300 VVEVKIR 306 (327)
T ss_pred eEEEEEE
Confidence 4566654
No 394
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.88 E-value=7.5 Score=32.50 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 648 ELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTS 697 (1268)
Q Consensus 648 ~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~ 697 (1268)
.+.-++.++++++++...+......+....+.++.+-+.++.+....+..
T Consensus 19 TI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQer 68 (79)
T COG3074 19 TITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQER 68 (79)
T ss_pred HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444444444444444444333
No 395
>COG5293 Predicted ATPase [General function prediction only]
Probab=89.87 E-value=45 Score=38.87 Aligned_cols=19 Identities=16% Similarity=0.280 Sum_probs=8.2
Q ss_pred EEEEEEEeeeecccccccC
Q 000820 1012 SFSLKAYMVELYQDTLVDL 1030 (1268)
Q Consensus 1012 ~~~v~~s~~eiy~e~v~DL 1030 (1268)
+|.+.+--=++-...+-||
T Consensus 547 Qy~~Tln~~~lp~~~~~~L 565 (591)
T COG5293 547 QYVMTLNDSDLPERSVKDL 565 (591)
T ss_pred eEEEEeccccCchhhHhhc
Confidence 4545443333444444443
No 396
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=89.86 E-value=0.67 Score=40.20 Aligned_cols=44 Identities=14% Similarity=0.059 Sum_probs=36.0
Q ss_pred eEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEE
Q 000820 284 TTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFE 328 (1268)
Q Consensus 284 ~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~ 328 (1268)
.+.|++|||+...+.+-+..|+.|++..+|++-||.. ..+.+|.
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~-~~~~V~~ 45 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRGLNP-ECCDVRL 45 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT--C-CCEEEEE
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCH-HHEEEEE
Confidence 4789999999999999999999999999999999964 3556663
No 397
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=89.66 E-value=54 Score=39.47 Aligned_cols=8 Identities=0% Similarity=-0.027 Sum_probs=3.7
Q ss_pred eEEEeCCC
Q 000820 913 YVLTSLDE 920 (1268)
Q Consensus 913 ~~~~~~~~ 920 (1268)
++|..|+.
T Consensus 243 viV~LP~~ 250 (475)
T PRK10361 243 VIVRLPQG 250 (475)
T ss_pred EEEECCCC
Confidence 44554543
No 398
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=89.66 E-value=33 Score=40.43 Aligned_cols=23 Identities=13% Similarity=0.066 Sum_probs=13.9
Q ss_pred eeEEEEEcCcHHHHHHHHHHHHH
Q 000820 568 LHIFQFETKQGEEICVALQTHIN 590 (1268)
Q Consensus 568 ~~~~~feT~q~~eI~~li~~yi~ 590 (1268)
.-.+.|..........+.+.++.
T Consensus 132 ii~I~~~~~dP~~A~~ian~l~~ 154 (362)
T TIGR01010 132 ILTLNVTAFDAEEAQKINQRLLK 154 (362)
T ss_pred eEEEEEEecCHHHHHHHHHHHHH
Confidence 34566677766666666666544
No 399
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=89.66 E-value=11 Score=44.06 Aligned_cols=12 Identities=0% Similarity=0.304 Sum_probs=4.3
Q ss_pred HHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTV 635 (1268)
Q Consensus 624 ~k~~l~eL~~~l 635 (1268)
...++.++++..
T Consensus 217 ~~~el~eik~~~ 228 (395)
T PF10267_consen 217 ILEELREIKESQ 228 (395)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 400
>PF08416 PTB: Phosphotyrosine-binding domain; InterPro: IPR013625 The phosphotyrosine-binding domain (PTB, also phosphotyrosine-interaction or PI domain) of tensin tends to be found at the C terminus of a protein. Tensin is a multi-domain protein that binds to actin filaments and functions as a focal-adhesion molecule (focal adhesions are regions of plasma membrane through which cells attach to the extracellular matrix). Human tensin has actin-binding sites, an SH2 (IPR000980 from INTERPRO) domain and a region similar to the tumour suppressor PTEN []. The PTB domain interacts with the cytoplasmic tails of beta integrin by binding to an NPXY motif []. ; GO: 0005515 protein binding; PDB: 3HQC_A 2DKQ_A 2LOZ_A 2CY5_A 2CY4_A 2GJY_A 1WVH_A.
Probab=89.59 E-value=0.71 Score=45.43 Aligned_cols=81 Identities=22% Similarity=0.336 Sum_probs=58.4
Q ss_pred CCCCceEEEEEecCceEEECCCccchhccccccceeeccCC------CCceEEEEEEcCe--eeEEEEE--cCcHHHHHH
Q 000820 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSS------NSAVFFKMRVAGV--LHIFQFE--TKQGEEICV 583 (1268)
Q Consensus 514 ~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~------~~~~~~~i~~~~~--~~~~~fe--T~q~~eI~~ 583 (1268)
..++..+.|-|+..||.+.|..+++.+.+||++.|...+.. ++-|-|..+..+. ...+.|. --.|..++.
T Consensus 36 ~~w~q~~~lkV~~~~v~L~D~~~k~~le~yPl~~I~~c~~~~~~~~~~~il~fV~r~~~~~~~~~H~Fqc~ev~a~~~~~ 115 (131)
T PF08416_consen 36 RIWPQEMHLKVSDQGVTLTDIETKEFLEHYPLSSIQFCGADPDSRRYNSILGFVVRKPGSSKPNVHLFQCEEVDAEQPAE 115 (131)
T ss_dssp -SS-EEEEEEEETTEEEEEESSTSSECEEEECCCEEEEEEETTTTEECBEEEEEEEETTCCCEEEEEEEETCTCTTSHHH
T ss_pred CcccEEEEEEEeCCeEEEEECcccchhhhCCHhHeeeccccCCCCccceEEEEEEecCCCCCCcEEEEEcCCCCHHHHHH
Confidence 34788999999999999999999999999999999876322 2234455554432 2234554 667889999
Q ss_pred HHHHHHHHHHH
Q 000820 584 ALQTHINDVML 594 (1268)
Q Consensus 584 li~~yi~~~~~ 594 (1268)
.|..+++.++.
T Consensus 116 ~I~~~v~~~~~ 126 (131)
T PF08416_consen 116 DIVSAVSKVKS 126 (131)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHhc
Confidence 99999985443
No 401
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.57 E-value=97 Score=42.25 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.3
Q ss_pred CCCCch
Q 000820 1128 KSGSSG 1133 (1268)
Q Consensus 1128 ~~~~~~ 1133 (1268)
.+-+.|
T Consensus 949 ~~lSgG 954 (1042)
T TIGR00618 949 ATLSGG 954 (1042)
T ss_pred ccCCHH
Confidence 333344
No 402
>PF15294 Leu_zip: Leucine zipper
Probab=89.56 E-value=38 Score=37.55 Aligned_cols=43 Identities=26% Similarity=0.375 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEK 776 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~ 776 (1268)
.++..++.+...++..+..++......-.+...++.++.+++.
T Consensus 132 kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 132 KEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554444444444444444444444444443
No 403
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.32 E-value=47 Score=38.29 Aligned_cols=17 Identities=6% Similarity=0.190 Sum_probs=9.8
Q ss_pred HHHHHHhcCCCCCeeeE
Q 000820 488 QFLRILRTLPYGNSVFF 504 (1268)
Q Consensus 488 ~fL~~~~~~p~fGs~~F 504 (1268)
+|.+..+....-|.++=
T Consensus 152 qyve~fk~~kv~G~alP 168 (575)
T KOG4403|consen 152 QYVEAFKAKKVDGKALP 168 (575)
T ss_pred HHHHHHHhccCCccccc
Confidence 46666666555555543
No 404
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=89.19 E-value=72 Score=40.21 Aligned_cols=40 Identities=5% Similarity=0.219 Sum_probs=23.4
Q ss_pred hccccchhhhhh-----hcHHHHHHHHHHHHHhcCCCCHHHHHHH
Q 000820 449 LERFLPRQVAIT-----RAKREWELDILSRYRSMEHLTKDDARQQ 488 (1268)
Q Consensus 449 l~~~lP~~~~~~-----~~~~~w~~~I~~~~~~l~~~s~~~A~~~ 488 (1268)
+...||.+.-.. .....+...|...+..+..+++.+-..+
T Consensus 352 iD~IIpEp~ggAh~d~~~~~~~l~~~i~~~L~~l~~~~~~~l~~~ 396 (762)
T PLN03229 352 ADGIIPEPLGGAHADPSWTSQQIKIAINENMDELGKMDTEELLKH 396 (762)
T ss_pred CeeeccCCCCccccCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 455666553221 1223455677777788888887766443
No 405
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=89.14 E-value=46 Score=37.91 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEE 662 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~e 662 (1268)
+..+...+.++..-..+.+..++++...+..-..+-..++..
T Consensus 24 ~~~l~~~l~~l~~~~~~~~~~L~e~~~~L~~E~~ed~~~r~~ 65 (296)
T PF13949_consen 24 IEKLEESLQELPELSQEVRSILDEIEEMLDEEEREDEQLRAK 65 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555444444455555544444444444444333
No 406
>KOG4239 consensus Ras GTPase effector RASSF2 [Signal transduction mechanisms]
Probab=89.07 E-value=0.54 Score=51.21 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=50.0
Q ss_pred CCCCCCCHHHHHH----HHcCC--cceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCC-CCCceEEEEEe
Q 000820 264 PRHTIPGREEIEA----LLTGR--KLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLS-AHSSFSLFECR 330 (1268)
Q Consensus 264 ~R~~~Ps~~Ei~A----i~~~~--~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~-~~~~F~L~~~~ 330 (1268)
.+..||+.....- ..++. .-...||+|-.+...|.|+|.||+.+|+..+.++..+. ++..|+||++-
T Consensus 179 ~g~~p~~~~d~~~~~r~singhfynh~TSfflPa~svk~vrInStttt~eVI~~LLkKF~Ved~P~kFALy~~~ 252 (348)
T KOG4239|consen 179 RGKKPPSVYDARIRHRFSINGHFYNHRTSFFLPADSVKNVRINSTTTTREVIKLLLKKFRVEDNPQKFALYERH 252 (348)
T ss_pred CCCCCCcHHHHHHhhcccccceeeccceeeecccccceeEEecccccHHHHHHHHHHHHeecCCHhheeeeEEe
Confidence 3456666654442 11222 22345888888888999999999999999999999997 78899999864
No 407
>KOG0817 consensus Acyl-CoA-binding protein [Lipid transport and metabolism]
Probab=89.03 E-value=1.6 Score=43.10 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=63.8
Q ss_pred hhhHHHhhhhhhcCcccCChhhHHHHHHHHHHHHhCCCCCCCCcCchhhhhccccchhhhhhhcHHHHHHHHHHHHHhcC
Q 000820 399 QLSYVQLQHDYVLGNYPVGRDDAAQLSALQILVEIGFVGSPESCNDWTSLLERFLPRQVAITRAKREWELDILSRYRSME 478 (1268)
Q Consensus 399 ~l~y~Q~~~d~l~G~~~~~~e~a~~LAAL~~q~~~Gd~~~~~~~~~~~~~l~~~lP~~~~~~~~~~~w~~~I~~~~~~l~ 478 (1268)
..-|..+...+-.=.=-.+.++.++|=||.=|+..|+++.+... +.....+..|.. |+++.
T Consensus 6 ~~~Fe~a~~~~~~l~~~p~~ee~L~lYglyKQAt~G~~~~~kPg--------------~~d~~~k~Kw~A-----W~~l~ 66 (142)
T KOG0817|consen 6 EAKFEAAAEAVKNLKKKPSNEELLKLYGLYKQATVGDCNTPKPG--------------FFDEEGKAKWQA-----WNSLG 66 (142)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHhhccCCCCCCCCc--------------hhhHHHHHHHHH-----HHhcC
Confidence 33455555554433333778999999999999999988764321 222233455654 99999
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCCeeeEEEEe
Q 000820 479 HLTKDDARQQFLRILRTL-PYGNSVFFSVRK 508 (1268)
Q Consensus 479 ~~s~~~A~~~fL~~~~~~-p~fGs~~F~v~~ 508 (1268)
|+++.+|+..|++++..+ |-|++..=.+..
T Consensus 67 ~~s~~eA~~~Yv~~~~~l~~~~~~~~~~~~~ 97 (142)
T KOG0817|consen 67 GMSKEEAMEAYVEKVEELIPKYGAEAETEEK 97 (142)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhcccccccC
Confidence 999999999999999876 777766544433
No 408
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=89.03 E-value=14 Score=34.11 Aligned_cols=63 Identities=11% Similarity=0.208 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKS 689 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~ 689 (1268)
++..++...++....+.....++..++..+.++..++.....++-.+....+.+..++..+..
T Consensus 4 EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~ 66 (96)
T PF08647_consen 4 ELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNT 66 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444433444333333333
No 409
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.98 E-value=32 Score=41.49 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 784 LEKSFEQERKALKLQVSELERKLG 807 (1268)
Q Consensus 784 ~~~~le~ei~~l~~~i~~l~~~l~ 807 (1268)
.+..++.++...+.++...+..+.
T Consensus 228 ~~~~~~~~l~~~~~~l~~~~~~l~ 251 (421)
T TIGR03794 228 ELETVEARIKEARYEIEELENKLN 251 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445555555666666665554
No 410
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=88.91 E-value=36 Score=36.42 Aligned_cols=27 Identities=7% Similarity=-0.122 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 684 HDRLKSLCDEKDTSLQVVLLEKRSMEA 710 (1268)
Q Consensus 684 ~~~l~~e~~~le~~l~~l~~e~~~le~ 710 (1268)
..+...++....+.+-...+.+..|-.
T Consensus 94 F~~q~~qvNaWDr~LI~ngekI~~Ly~ 120 (254)
T KOG2196|consen 94 FLQQATQVNAWDRTLIENGEKISGLYN 120 (254)
T ss_pred HHHHHHHHhHHHHHHHhCcHHHHHHHH
Confidence 333344444444444444444433333
No 411
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=88.82 E-value=72 Score=39.75 Aligned_cols=27 Identities=11% Similarity=-0.055 Sum_probs=17.1
Q ss_pred HhHHHHHHHhhhccccccccccceeee
Q 000820 871 LYKEEQILRKRYFNTIEDMKGKIRVYC 897 (1268)
Q Consensus 871 ~~~~~~~~r~kl~~~i~~~k~~i~~~~ 897 (1268)
+.+.+...+.+|...|.+-.+.-.|..
T Consensus 1093 elenLrnEieklndkIkdnne~~QVgl 1119 (1424)
T KOG4572|consen 1093 ELENLRNEIEKLNDKIKDNNEGDQVGL 1119 (1424)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcchHHH
Confidence 344555666777777777777666643
No 412
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=88.75 E-value=21 Score=37.37 Aligned_cols=20 Identities=25% Similarity=0.473 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000820 734 QTLHELQRELKICNEELHAE 753 (1268)
Q Consensus 734 ~~l~~l~~el~~l~~el~~~ 753 (1268)
.++..|...+...+.++...
T Consensus 151 ~Rve~L~~QL~~Ar~D~~~t 170 (188)
T PF05335_consen 151 RRVEELQRQLQAARADYEKT 170 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333
No 413
>cd01779 Myosin_IXb_RA ubitquitin-like domain of Myosin_IXb_RA. Myosin_IXb_RA RasGTP binding domain from guanine nucleotide exchange factors. In some proteins the domain acts as a RasGTP effector (AF6, canoe and RalGDS, for example), but in other cases it may not bind to RasGTP at all.
Probab=88.64 E-value=0.87 Score=40.51 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=41.7
Q ss_pred EEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCCCCCCCCccccCCCcchHH
Q 000820 294 FEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKASDHDNEEYIGLDDNKYIG 356 (1268)
Q Consensus 294 ~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~ 356 (1268)
++.|.+.+.+|++||++.+...|+|.-...|-|.+|+. .+.+..+|++.+...
T Consensus 26 ~C~v~a~k~sTAa~VI~~~i~~L~Ld~tk~YvLaEVkE----------sGgEEwvL~p~D~pv 78 (105)
T cd01779 26 SCRVTATKDSTAADVIDDVIASLQLDGTKCYVLAEVKE----------SGGEEWVLDPTDSPV 78 (105)
T ss_pred EeEeEeccCCcHHHHHHHHHHHhCcCccccEEEEEeec----------cCCeeeecCcccCce
Confidence 46799999999999999999999999888999998763 344445566655433
No 414
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=88.63 E-value=49 Score=37.65 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 637 ESQRNADQLLEELHERQRQEAKMQEEL 663 (1268)
Q Consensus 637 e~~~~l~~l~~~l~~l~~e~~~l~~el 663 (1268)
.+...+.++..-....+..+.+.+..+
T Consensus 26 ~l~~~l~~l~~~~~~~~~~L~e~~~~L 52 (296)
T PF13949_consen 26 KLEESLQELPELSQEVRSILDEIEEML 52 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 415
>PRK11519 tyrosine kinase; Provisional
Probab=88.61 E-value=21 Score=46.37 Aligned_cols=19 Identities=32% Similarity=0.331 Sum_probs=12.5
Q ss_pred cceEEEeecccCCCccccc
Q 000820 965 YNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 965 ~n~~i~ayG~tgsGKT~t~ 983 (1268)
.++.+++-...|.|||++-
T Consensus 526 ~kvi~vts~~~geGKTt~a 544 (719)
T PRK11519 526 NNVLMMTGVSPSIGKTFVC 544 (719)
T ss_pred ceEEEEECCCCCCCHHHHH
Confidence 3344444446799999985
No 416
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=88.43 E-value=34 Score=41.24 Aligned_cols=17 Identities=18% Similarity=0.307 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000820 626 KRIQDLSKTVEESQRNA 642 (1268)
Q Consensus 626 ~~l~eL~~~l~e~~~~l 642 (1268)
.++..++..+..++.++
T Consensus 96 ~~~~~~~~~l~~~~~q~ 112 (421)
T TIGR03794 96 ERLQESYQKLTQLQEQL 112 (421)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444433
No 417
>PRK06620 hypothetical protein; Validated
Probab=88.37 E-value=0.2 Score=54.16 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.0
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccc---eEEEeecccCCCcccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYN---VCIFAYGQTGSGKTFTIY 984 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n---~~i~ayG~tgsGKT~t~~ 984 (1268)
..|+||..+...++ ...|..+..+... . |+| ..++-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~N-~~a~~~~~~~~~~-~-~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSSN-DQAYNIIKNWQCG-F-GVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEecccH-HHHHHHHHHHHHc-c-ccCCCcceEEEECCCCCCHHHHHH
Confidence 46889988865544 4567665554431 1 443 459999999999999984
No 418
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=88.33 E-value=50 Score=37.31 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 000820 640 RNADQLL 646 (1268)
Q Consensus 640 ~~l~~l~ 646 (1268)
..++++.
T Consensus 55 ~~ld~~~ 61 (301)
T PF06120_consen 55 DSLDELK 61 (301)
T ss_pred HhhHHHH
Confidence 3333333
No 419
>PTZ00121 MAEBL; Provisional
Probab=88.27 E-value=1.1e+02 Score=41.18 Aligned_cols=9 Identities=0% Similarity=0.323 Sum_probs=3.6
Q ss_pred CCCCCCccc
Q 000820 1163 IPYRNHKLT 1171 (1268)
Q Consensus 1163 vpyr~skLT 1171 (1268)
.-|+....+
T Consensus 2007 ~CF~K~~fS 2015 (2084)
T PTZ00121 2007 KCFKKKEFS 2015 (2084)
T ss_pred hhhcccCcc
Confidence 334444433
No 420
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=88.23 E-value=10 Score=49.13 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=9.3
Q ss_pred CCcccccccCCCCCC
Q 000820 977 SGKTFTIYGSECNPG 991 (1268)
Q Consensus 977 sGKT~t~~G~~~~~G 991 (1268)
.+|+-.+.|..+..|
T Consensus 530 ~~kvI~vtS~~~g~G 544 (726)
T PRK09841 530 ENNILMITGATPDSG 544 (726)
T ss_pred CCeEEEEecCCCCCC
Confidence 457777766665555
No 421
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.21 E-value=28 Score=41.25 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=16.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQ 653 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~ 653 (1268)
+++.+.++++--..+.+..+..++.+.+++.+|+
T Consensus 335 GF~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 335 GFEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444444444444444444
No 422
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=88.08 E-value=28 Score=34.15 Aligned_cols=141 Identities=17% Similarity=0.246 Sum_probs=0.0
Q ss_pred cccCCCCCCCCCCCcCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000820 602 SAATGSVNGDLSNNVKTH------SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDL----KDSLR 671 (1268)
Q Consensus 602 ~~~~gs~tGG~~~~~k~~------~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l----~~~l~ 671 (1268)
..+|+.-.||++...... .+..++..-.+++..--+...++...-..+.+..+.+..+..+++.+ +..+.
T Consensus 8 ~~~~~~~~~g~~~~~~~~e~~s~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~ 87 (159)
T PF04949_consen 8 KNSGSISFNGSSMMDDEDEEMSRSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLADPMRKEVE 87 (159)
T ss_pred ccCCCCCCCCCcccchhHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHH
Q 000820 672 FEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELK 744 (1268)
Q Consensus 672 ~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~ 744 (1268)
.++..++....++..+...+...+.+...+.+.......+...|-....++-..-+.+. ...+.+|...++
T Consensus 88 ~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~~L~eLv~eSE~~r--mKKLEELsk~ie 158 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVTRLMELVSESERLR--MKKLEELSKEIE 158 (159)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhcc
No 423
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=88.07 E-value=15 Score=35.76 Aligned_cols=54 Identities=13% Similarity=0.226 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 661 EELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAK 714 (1268)
Q Consensus 661 ~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~ 714 (1268)
.+++.+..++++..+-.+..+.++..+...++.+..+++..+.-...|+.++..
T Consensus 68 qRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ 121 (126)
T PF07889_consen 68 QRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDE 121 (126)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444444444444444444444444444443
No 424
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=88.06 E-value=3 Score=49.23 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=15.5
Q ss_pred ceEEEeecccCCCccccc
Q 000820 966 NVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 966 n~~i~ayG~tgsGKT~t~ 983 (1268)
...|+-||++|+|||++.
T Consensus 156 p~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLA 173 (364)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345899999999999887
No 425
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=87.92 E-value=48 Score=36.69 Aligned_cols=15 Identities=13% Similarity=0.339 Sum_probs=6.8
Q ss_pred HHHHHhhhcccccCC
Q 000820 592 VMLRRYSKARSAATG 606 (1268)
Q Consensus 592 ~~~~r~~~~~~~~~g 606 (1268)
.+-+||......|++
T Consensus 28 WLv~rydP~~~i~~~ 42 (267)
T PF10234_consen 28 WLVKRYDPDADIPGD 42 (267)
T ss_pred HHHHHcCCCCCCCCc
Confidence 344455544444433
No 426
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.92 E-value=7.1 Score=43.42 Aligned_cols=66 Identities=26% Similarity=0.305 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 627 RIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCD 692 (1268)
Q Consensus 627 ~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~ 692 (1268)
+.+.|..+...++.+..-+++..-+-+.+...+.+++......+.+.+.+.+.+.-..+++...++
T Consensus 16 kyqklaqeysklraqakvlke~viee~gk~~kl~eelk~k~a~irrieaendsl~frndql~rrve 81 (637)
T KOG4421|consen 16 KYQKLAQEYSKLRAQAKVLKEAVIEEQGKEAKLREELKQKAASIRRIEAENDSLGFRNDQLERRVE 81 (637)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 344455455555555555555544444555555555555555544444444444444444433333
No 427
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=87.81 E-value=2 Score=41.30 Aligned_cols=77 Identities=25% Similarity=0.303 Sum_probs=57.6
Q ss_pred CCCCceEEEEEecCceEEECCCccchhccccccceeec------cCCCCceEEEEEEcCe----eeEEEEEcCcHHHHHH
Q 000820 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQF------GSSNSAVFFKMRVAGV----LHIFQFETKQGEEICV 583 (1268)
Q Consensus 514 ~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~------~~~~~~~~~~i~~~~~----~~~~~feT~q~~eI~~ 583 (1268)
..++.+.+|-|+...|.++|+.+++.+.+||++.|..- +.-++-+.|++...+. .+.|++..-.|..|..
T Consensus 38 ~iW~Q~m~lqv~~~~v~LlD~etk~elE~fpl~~I~~~~a~~~~~~ynslL~~vvq~~~~~~~e~hlFQc~~v~A~~i~~ 117 (127)
T cd01210 38 RVWSQKMILRVRYQWVTLLDYETKEELESYPLSLIQEPTAFTSMELYNSILLFVVQEPGGSRTEMHIFQCQRVGAEHLVE 117 (127)
T ss_pred CccccceEEEEcCCeEEEEcCCCcChhhcCCHhhccccceecCCCCcCceEEEEEeCCCCCCCcEEEEEeccccHHHHHH
Confidence 33778899999999999999999999999999998754 4445544455554432 2567777778888887
Q ss_pred HHHHHHH
Q 000820 584 ALQTHIN 590 (1268)
Q Consensus 584 li~~yi~ 590 (1268)
=|+..+.
T Consensus 118 DL~~a~~ 124 (127)
T cd01210 118 DLQQALS 124 (127)
T ss_pred HHHHHHh
Confidence 7777664
No 428
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=87.80 E-value=26 Score=41.28 Aligned_cols=12 Identities=25% Similarity=0.141 Sum_probs=5.2
Q ss_pred CCC-CeeeEEEEe
Q 000820 497 PYG-NSVFFSVRK 508 (1268)
Q Consensus 497 p~f-Gs~~F~v~~ 508 (1268)
|.| ...-|.|+.
T Consensus 28 p~Y~s~a~~~v~~ 40 (362)
T TIGR01010 28 DRYVSESSFVVRS 40 (362)
T ss_pred ccceEEEEEEEec
Confidence 444 334445543
No 429
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=87.79 E-value=32 Score=39.86 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 000820 628 IQDLSKTVEESQR 640 (1268)
Q Consensus 628 l~eL~~~l~e~~~ 640 (1268)
+..++..+...+.
T Consensus 57 ~~~a~a~l~~a~a 69 (327)
T TIGR02971 57 LDVARTQLDEAKA 69 (327)
T ss_pred HHHHHHHHHHHHH
Confidence 3333444433333
No 430
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=87.79 E-value=6.5 Score=34.39 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 633 KTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEK 674 (1268)
Q Consensus 633 ~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~ 674 (1268)
+.+.+-...|..+.++.+.+.........-+..++......+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e 46 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELE 46 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333333333
No 431
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=87.78 E-value=32 Score=37.81 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 782 EILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLAS 822 (1268)
Q Consensus 782 ~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~ 822 (1268)
...+.+.+.+..+++.++.+...++.+++.+..++...+..
T Consensus 213 ~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~ 253 (269)
T PF05278_consen 213 EEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKS 253 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444443333333333333
No 432
>PRK12377 putative replication protein; Provisional
Probab=87.72 E-value=0.37 Score=53.11 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=35.4
Q ss_pred EeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCcccccc
Q 000820 936 MYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 984 (1268)
Q Consensus 936 ~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~ 984 (1268)
+||........|..++..+..++..+..+. ..++-+|++|+||||.+.
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 466555445567667777777777776654 468899999999999984
No 433
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.67 E-value=0.29 Score=58.03 Aligned_cols=31 Identities=32% Similarity=0.357 Sum_probs=27.2
Q ss_pred HHHHHHHHhcccceEEEeecccCCCcccccc
Q 000820 954 TRYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 984 (1268)
Q Consensus 954 ~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~ 984 (1268)
....+..++..-++.|+..|+||||||.||+
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY 276 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLY 276 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHH
Confidence 3456778899999999999999999999994
No 434
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=87.65 E-value=18 Score=42.29 Aligned_cols=22 Identities=5% Similarity=-0.026 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000820 625 EKRIQDLSKTVEESQRNADQLL 646 (1268)
Q Consensus 625 k~~l~eL~~~l~e~~~~l~~l~ 646 (1268)
+..+.+++.+++..+.+++.++
T Consensus 85 ~~~l~~a~a~l~~a~a~l~~~~ 106 (346)
T PRK10476 85 ELTVAQAQADLALADAQIMTTQ 106 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555544444443
No 435
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=87.49 E-value=21 Score=33.08 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000820 749 ELHAEKENVKKFLNEKVLLEQK 770 (1268)
Q Consensus 749 el~~~~~~~~~l~~el~~l~~~ 770 (1268)
++..+++.+.++..++....++
T Consensus 25 ~~~~lE~k~~rl~~Ek~kadqk 46 (96)
T PF08647_consen 25 ELTILEQKKLRLEAEKAKADQK 46 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 436
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.34 E-value=17 Score=35.25 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000820 770 KISKLEKKTEEMEILEK 786 (1268)
Q Consensus 770 ~l~~le~~~~el~~~~~ 786 (1268)
+++.+..++++..+..+
T Consensus 69 RId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISK 85 (126)
T ss_pred HHHHHHhhHHHHHHHHH
Confidence 33333333333333333
No 437
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=87.18 E-value=44 Score=39.82 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000820 756 NVKKFLNEKVLLEQKISKLE 775 (1268)
Q Consensus 756 ~~~~l~~el~~l~~~l~~le 775 (1268)
++..++.++..++.+++..+
T Consensus 315 qV~~l~~rI~aLe~QIa~er 334 (434)
T PRK15178 315 LIPRLSAKIKVLEKQIGEQR 334 (434)
T ss_pred chhHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 438
>cd01273 CED-6 CED-6 Phosphotyrosine-binding (PTB) domain. CED-6 Phosphotyrosine-binding (PTB) domain. CED6 is an adaptor protein involved in the engulfment of apoptotic cells. It has a C-terminal PTB domain, which can bind to NPXY motifs. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=87.10 E-value=3.6 Score=41.23 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=51.1
Q ss_pred CceEEEEEecCceEEECCCccchhccccccceeeccCC---CCceEEEEEEcC---eeeEEEEEcCc-HHHHHHHHHHHH
Q 000820 517 PGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSS---NSAVFFKMRVAG---VLHIFQFETKQ-GEEICVALQTHI 589 (1268)
Q Consensus 517 p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~---~~~~~~~i~~~~---~~~~~~feT~q-~~eI~~li~~yi 589 (1268)
+.++.|-|+..||.++|+.+++.++.+|+..|.-.+.. .+.|-|..+... .-.=+.|.+.+ |.+|...|..--
T Consensus 54 ~~~V~L~IS~~GI~v~d~~t~~~~~~~~i~~ISfca~d~~~~r~FayIak~~~~~~~~~ChvF~s~~~A~~I~~tigqAF 133 (142)
T cd01273 54 LQKVEIRISIDGVIIAEPKTKAPMHTFPLGRISFCADDKDDKRMFSFIAKAEGASGKHSCFVFTSEKLAEDITLTIGQAF 133 (142)
T ss_pred CcEEEEEEECCeEEEEEcCCCcEEEEcCcceEEEEecCCCCCeEEEEEecCCCCCCcEEEEEEeccchHHHHHHHHHHHH
Confidence 45899999999999999999999999999999543322 222233334332 12235566754 888888877654
Q ss_pred H
Q 000820 590 N 590 (1268)
Q Consensus 590 ~ 590 (1268)
+
T Consensus 134 ~ 134 (142)
T cd01273 134 D 134 (142)
T ss_pred H
Confidence 4
No 439
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=87.07 E-value=0.97 Score=38.80 Aligned_cols=37 Identities=16% Similarity=0.041 Sum_probs=33.9
Q ss_pred EEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCC
Q 000820 286 IVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHS 322 (1268)
Q Consensus 286 ~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~ 322 (1268)
.|.+|||....+.+.++.|+.|+++..|++=++....
T Consensus 3 ~V~lPn~~~~~v~vrp~~tv~dvLe~aCk~~~ldp~e 39 (77)
T cd01818 3 WVCLPDNQPVLTYLRPGMSVEDFLESACKRKQLDPME 39 (77)
T ss_pred EEECCCCceEEEEECCCCCHHHHHHHHHHhcCCChhH
Confidence 5899999999999999999999999999999997443
No 440
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.90 E-value=0.36 Score=53.11 Aligned_cols=46 Identities=9% Similarity=0.395 Sum_probs=31.3
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
..|+||..+.. .+...+..+..++. ......++-||++|+||||.+
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHH
Confidence 35678877755 45556655554432 222347899999999999998
No 441
>PRK06893 DNA replication initiation factor; Validated
Probab=86.85 E-value=0.38 Score=52.71 Aligned_cols=46 Identities=15% Similarity=0.221 Sum_probs=31.0
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
..++||..+.... ..- +..+.+.+-.++|..++-||++|+||||.+
T Consensus 11 ~~~~fd~f~~~~~-~~~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~ 56 (229)
T PRK06893 11 DDETLDNFYADNN-LLL----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLL 56 (229)
T ss_pred CcccccccccCCh-HHH----HHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 3567898886542 211 122223334577888999999999999998
No 442
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.78 E-value=8.4 Score=40.80 Aligned_cols=43 Identities=21% Similarity=0.338 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 658 KMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQV 700 (1268)
Q Consensus 658 ~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~ 700 (1268)
.+.++++.++++++....+++..+.+...+..+.+++..+.+.
T Consensus 155 ~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~Eydr 197 (216)
T KOG1962|consen 155 KLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDR 197 (216)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 3333333333333333333333333333333333333333333
No 443
>cd01268 Numb Numb Phosphotyrosine-binding (PTB) domain. Numb Phosphotyrosine-binding (PTB) domain. Numb is a membrane associated adaptor protein, which is a determinant of asymmetric cell division. Numb has an N-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=86.78 E-value=3.5 Score=40.71 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=49.9
Q ss_pred CceEEEEEecCceEEECCCccchhccccccceeecc--CCCCceEEEEEEcCe--e----eEEEEEcCcHHHHHHHHHHH
Q 000820 517 PGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFG--SSNSAVFFKMRVAGV--L----HIFQFETKQGEEICVALQTH 588 (1268)
Q Consensus 517 p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~--~~~~~~~~~i~~~~~--~----~~~~feT~q~~eI~~li~~y 588 (1268)
+..++|-|+.+||.++|+.|+++++.+|+..|.=++ ..++. +|-+...+. . |.|...-.-|+.|++.|..-
T Consensus 49 ~~kv~L~VS~~Gi~vvd~~Tk~~i~~~~i~~ISfca~D~~d~r-~FayIakd~~~~r~~CHvF~~~k~sa~~i~~avG~A 127 (138)
T cd01268 49 PVKAVLWVSGDGLRVVDEKTKGLIVDQTIEKVSFCAPDRNFDR-GFSYICRDGTTRRWMCHGFLAVKDTGERLSHAVGCA 127 (138)
T ss_pred CCEEEEEEecCcEEEEecCCCcEEEEEeEEEEEEEecCCCCCc-EEEEEecCCCcccEEEEEEEeeccchhHHHHHHHHH
Confidence 557999999999999999999999999999995332 22222 333333332 1 34444323488899888765
Q ss_pred HH
Q 000820 589 IN 590 (1268)
Q Consensus 589 i~ 590 (1268)
-.
T Consensus 128 F~ 129 (138)
T cd01268 128 FA 129 (138)
T ss_pred HH
Confidence 54
No 444
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=86.53 E-value=50 Score=35.41 Aligned_cols=53 Identities=21% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 623 LFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQ 675 (1268)
Q Consensus 623 ~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~ 675 (1268)
.++.-+....-++++.++-....-.++..-...+-+..+.+-.+-.+....+.
T Consensus 75 ~LeeliNkWs~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~ 127 (254)
T KOG2196|consen 75 TLEELINKWSLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKL 127 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444444444444433333333333
No 445
>PRK00106 hypothetical protein; Provisional
Probab=86.52 E-value=91 Score=38.42 Aligned_cols=7 Identities=57% Similarity=1.222 Sum_probs=3.9
Q ss_pred ccccccc
Q 000820 887 EDMKGKI 893 (1268)
Q Consensus 887 ~~~k~~i 893 (1268)
++|||+|
T Consensus 234 demkGri 240 (535)
T PRK00106 234 DNMKGRI 240 (535)
T ss_pred hHhhcce
Confidence 3666653
No 446
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=86.46 E-value=0.34 Score=59.68 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=35.2
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCcccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 984 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~ 984 (1268)
..|+||..+-... +...|..+..++...-.++|. ||-||.+|+||||.+.
T Consensus 283 ~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 283 PKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 4688988775443 444555555555544456776 8999999999999983
No 447
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=86.30 E-value=51 Score=37.58 Aligned_cols=132 Identities=10% Similarity=0.130 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCCC---cCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 601 RSAATGSVNGDLSNN---VKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKL 677 (1268)
Q Consensus 601 ~~~~~gs~tGG~~~~---~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l 677 (1268)
.+.-+.+..|+...+ ....-+.....+++++.+....+++..+.|+ ...+.++.=+-+.+++.+=+.
T Consensus 239 a~~~~n~~~g~~~~n~~~s~~~~l~aileeL~eIk~~q~~Leesye~Lk----------e~~krdy~fi~etLQEERyR~ 308 (455)
T KOG3850|consen 239 AADETNNVPGHGGANPYHSQGAALDAILEELREIKETQALLEESYERLK----------EQIKRDYKFIAETLQEERYRY 308 (455)
T ss_pred cccccCCCCCCCCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHH
Q 000820 678 AEVMADHDRL----KSLCDEKDTSLQVVLLEKR-SMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRE 742 (1268)
Q Consensus 678 ~~l~~e~~~l----~~e~~~le~~l~~l~~e~~-~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~e 742 (1268)
+.++++++.+ ..++..+++++...++.+. +-.++..++++..+.+...+..++...++.+-.+.+
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEALESCQTRISKLELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 448
>KOG4335 consensus FERM domain-containing protein KRIT1 [Signal transduction mechanisms]
Probab=86.27 E-value=0.45 Score=55.26 Aligned_cols=177 Identities=16% Similarity=0.287 Sum_probs=0.0
Q ss_pred EEeeccC--CcccCCCCchhhhhhHHHhhhhhhcCc--ccCChhhHHHHHHH-HHHHHhCCCCCCCCcCchhh---hhcc
Q 000820 380 FKKKLFR--ESDEAISEPMFVQLSYVQLQHDYVLGN--YPVGRDDAAQLSAL-QILVEIGFVGSPESCNDWTS---LLER 451 (1268)
Q Consensus 380 fk~~~f~--~~~~~~~d~~~~~l~y~Q~~~d~l~G~--~~~~~e~a~~LAAL-~~q~~~Gd~~~~~~~~~~~~---~l~~ 451 (1268)
|+|..|+ ......-++--..+.|..+...++.++ |+|..+++..++|| ++...+|.+.+......... .+..
T Consensus 202 ~~rn~~~~~~re~~~~~ee~a~~n~eeA~~nvl~a~~~~~~~Ve~~~~~ga~~~c~lQ~gn~~~~r~~~~gir~~~~~qs 281 (558)
T KOG4335|consen 202 FRRNVFFPKGRELQIIDEEVARLNYEEAKGNVLAARNKYLCDVEDCEALGALRVCRLQLGNYQPVRPAACGIRLSEKLQS 281 (558)
T ss_pred HhhhhhcccCcchhhhHHHHHHHhHHHHHHhHHHHhhhhhHHHHHHHHhhhhheehhhccCCccccchhhhcchHHHHHH
Q ss_pred ccchhhhhhhcHHHHH------------HHHHHHHHhcCCC--------CHHHHHHHHHHHHhcCCCCCeeeEEEEeecC
Q 000820 452 FLPRQVAITRAKREWE------------LDILSRYRSMEHL--------TKDDARQQFLRILRTLPYGNSVFFSVRKIDD 511 (1268)
Q Consensus 452 ~lP~~~~~~~~~~~w~------------~~I~~~~~~l~~~--------s~~~A~~~fL~~~~~~p~fGs~~F~v~~~~~ 511 (1268)
|+|..+....-.-.+. ..++..|+.+... ...---.++++.+-.-|+||..+|+-.+..-
T Consensus 282 ~f~~w~cs~~lslqlk~~h~p~~~v~~wp~LL~e~~N~sp~~d~p~~~l~r~v~l~~~~ek~iedp~~~~ilf~eaR~n~ 361 (558)
T KOG4335|consen 282 FFPAWLCSRGLSLQLKLRHRPARAVPGWPELLNEYRNVSPVSDDPGCELARGVHLRAYLEKCIEDPFYGCILFHEARDNP 361 (558)
T ss_pred HhHHHHhhcchhhhhhhccCCcccccccHHHHHHHhcCCccCCccchhhhhcccchhhhHhhhhchhhhhhhhhhhhhhh
Q ss_pred CCCCCCc----eEEEE-EecCceEEECCCccchhccccccceeeccCCCC
Q 000820 512 PIGLLPG----RIVLG-INKRGVHFFRPVPKEYLHSAELRDIMQFGSSNS 556 (1268)
Q Consensus 512 ~~~~~p~----~v~Lg-In~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~ 556 (1268)
-.+..-+ .|.+| |+..|+|+.+...|..+...++.++.+|-...+
T Consensus 362 L~Gfy~~~~~k~v~va~i~l~~vhv~~Ss~Kh~~~vl~lEelk~~~~t~~ 411 (558)
T KOG4335|consen 362 LQGFYHRGGRKSVSVASISLEGVHVVDSSEKHVLLVLNLEELKSWDHTSP 411 (558)
T ss_pred hccccccCCceeeehhhhhcccceeeccccccchhcccHHHhcccCCCCC
No 449
>PTZ00464 SNF-7-like protein; Provisional
Probab=86.15 E-value=52 Score=35.27 Aligned_cols=160 Identities=13% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH
Q 000820 606 GSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKM--------QEELDDLKDSLRFEKQKL 677 (1268)
Q Consensus 606 gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l--------~~el~~l~~~l~~~~~~l 677 (1268)
|.+-||.....+.. ....+..++..+..+.+++..+..++..+++.+... +...-.+-.+....+..+
T Consensus 2 ~rlFG~~k~~p~~t----~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~~~~~~~~~K~~Al~~LK~KK~~E~ql 77 (211)
T PTZ00464 2 NRLFGKKNKTPKPT----LEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRTRGMTQSRHKQRAMQLLQQKRMYQNQQ 77 (211)
T ss_pred ccccCCCCCCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-----
Q 000820 678 AEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHA----- 752 (1268)
Q Consensus 678 ~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~----- 752 (1268)
..+...+..++.....++..... ..=+..+..-...++...... .++.++.+..++.+......++.+-+..
T Consensus 78 ~~l~~q~~nleq~~~~ie~a~~~-~~vv~amk~g~kaLK~~~k~i--~id~Vd~l~Dei~E~~e~~~EI~e~Ls~~~~~~ 154 (211)
T PTZ00464 78 DMMMQQQFNMDQLQFTTESVKDT-KVQVDAMKQAAKTLKKQFKKL--NVDKVEDLQDELADLYEDTQEIQEIMGRAYDVP 154 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000820 753 EKENVKKFLNEKVLLEQKIS 772 (1268)
Q Consensus 753 ~~~~~~~l~~el~~l~~~l~ 772 (1268)
....-.++..|++.++.++.
T Consensus 155 ~~~DEdELe~ELe~Le~e~~ 174 (211)
T PTZ00464 155 DDIDEDEMLGELDALDFDME 174 (211)
T ss_pred CCCCHHHHHHHHHHHHHHHh
No 450
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=86.05 E-value=35 Score=39.72 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 687 LKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVL 766 (1268)
Q Consensus 687 l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~ 766 (1268)
...-.+.+.++++.+..+.+..+.=++.++++.... ....+..+++.+..+-..+-+++..++++-..+..++.+
T Consensus 141 ~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~-----~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 141 MDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV-----SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 767 LEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTL 820 (1268)
Q Consensus 767 l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el 820 (1268)
++.+..++.++....-..-....-+.-+.+.++..++.++.-.+..++.+....
T Consensus 216 ~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktN 269 (447)
T KOG2751|consen 216 LEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTN 269 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhh
No 451
>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=85.87 E-value=5.9 Score=39.17 Aligned_cols=82 Identities=18% Similarity=0.172 Sum_probs=0.0
Q ss_pred CCCCceEEEEEecCceEEECCCccchhccccccceeeccCCC---CceEEEEEEcC--eeeEEEEEcCc---HHHHHHHH
Q 000820 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSN---SAVFFKMRVAG--VLHIFQFETKQ---GEEICVAL 585 (1268)
Q Consensus 514 ~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~---~~~~~~i~~~~--~~~~~~feT~q---~~eI~~li 585 (1268)
+..+.++.|-|+..||.++|+.+++.+..+|+..|.=++... +.|-|..+... .-.=+.|.+.. |.+|...|
T Consensus 41 ~~k~~~V~L~IS~~gi~i~d~~t~~~l~~~~i~~ISfc~~d~~~~~~FafIa~~~~~~~~~ChvF~~~~~~~A~~I~~ti 120 (132)
T cd01267 41 WEKIPKVELDISIKGVKIIDPKTKTVLHGHPLYNISCCAQDKEDLRFFAFIAKDTETNKHYCHVFCSEKLGLAEEIILTI 120 (132)
T ss_pred cCCCCeEEEEEEcCcEEEEeCCCCcEEEEcccceEEEEecCCCCCeEEEEEEecCCCCceEEEEEECCCHHHHHHHHHHH
Q ss_pred HHHHHHHHHH
Q 000820 586 QTHINDVMLR 595 (1268)
Q Consensus 586 ~~yi~~~~~~ 595 (1268)
..--+..++.
T Consensus 121 g~AF~~ay~~ 130 (132)
T cd01267 121 GQAFELAYRL 130 (132)
T ss_pred HHHHHHHHHh
No 452
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=85.82 E-value=21 Score=34.11 Aligned_cols=104 Identities=16% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 683 DHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLN 762 (1268)
Q Consensus 683 e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~ 762 (1268)
+.+..-.++..++++++.+..++..++.++.+.....++++..-+...-...--.-+=.. ....-...++++.+.++.
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~--~k~~~~~eL~er~E~Le~ 84 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKV--SKEEAVDELEERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhh--hHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 763 EKVLLEQKISKLEKKTEEMEILEKSF 788 (1268)
Q Consensus 763 el~~l~~~l~~le~~~~el~~~~~~l 788 (1268)
++..++.+.+.++++++++...+...
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 453
>cd01208 X11 X11 Phosphotyrosine-binding (PTB) domain. X11 Phosphotyrosine-binding (PTB) domain. The neuronal protein X11 has a PTB domain followed by two PDZ domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether. X11 binds to the cytoplasmic domain of the beta-amyloid precursor protein (beta-APP) and does not require the substrate to be tyrosine-phosphorylated for binding.
Probab=85.80 E-value=4.5 Score=40.39 Aligned_cols=76 Identities=13% Similarity=0.132 Sum_probs=0.0
Q ss_pred eEEEEEecCceEEECCCccchhccccccceeeccCCCCceEEEE-----------------------EEcCeeeEEEEEc
Q 000820 519 RIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNSAVFFKM-----------------------RVAGVLHIFQFET 575 (1268)
Q Consensus 519 ~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~~~~~~i-----------------------~~~~~~~~~~feT 575 (1268)
+|-|-|+-+||.|+++.++++++.+|+..| ||......++.-| ......-=+.|++
T Consensus 51 ~V~L~IS~~gV~v~~~~tk~im~~h~L~~I-Sy~AD~~d~~v~mAkr~~~~~~~~~~~~~~~~~~~~~~~~k~~ChVFes 129 (156)
T cd01208 51 EVDLFISTEKIMVLNTDLQEIXMDHALRTI-SYIADIGDLVVLMARRRIPRSSSQENSEASHPSQDGKRTPKXICHVFES 129 (156)
T ss_pred EEEEEEEeCeEEEEecCccceeccCcccce-EEEecCCCeEEEEEeccccccccccccccCCcccccccccceeEEEEec
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 000820 576 KQGEEICVALQTHINDVMLR 595 (1268)
Q Consensus 576 ~q~~eI~~li~~yi~~~~~~ 595 (1268)
..|.+|...|.+--+.-+++
T Consensus 130 ~~Aq~Ia~TIGQAF~lAY~~ 149 (156)
T cd01208 130 DEAQFIAQSIGQAFQVAYQE 149 (156)
T ss_pred CcHHHHHHHHHHHHHHHHHH
No 454
>KOG2008 consensus BTK-associated SH3-domain binding protein SAB [Signal transduction mechanisms]
Probab=85.69 E-value=62 Score=35.71 Aligned_cols=209 Identities=13% Similarity=0.093 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHH
Q 000820 620 SIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKL-----------------AEVMA 682 (1268)
Q Consensus 620 ~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l-----------------~~l~~ 682 (1268)
.++.-...+-.++.+|+.+...-+.+...--+|+...++..+-.-....++..+-.++ .++..
T Consensus 4 ~~Eed~~~l~~I~~eLEkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el~Kk~~k~I~ksrpf~elk~~er~~r~ 83 (426)
T KOG2008|consen 4 GLEEDEEVLPRIQGELEKLNQSTDDINRRETELEDARQKFRETQVEATVKLDELVKKIGKAIEKSRPFWELKRVERQARL 83 (426)
T ss_pred ccchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 683 DHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLN 762 (1268)
Q Consensus 683 e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~ 762 (1268)
+.++....++....-+..+.+++.-+++.+.+.+ +.....+-.+.++...+.+.+.+.+.-..+.--...-..+-.+..
T Consensus 84 e~QkAa~~FeRat~vl~~AkeqVsl~~~sL~~~~-~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~ 162 (426)
T KOG2008|consen 84 EAQKAAQDFERATEVLRAAKEQVSLAEQSLLEDD-KRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMG 162 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 763 EKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAG 829 (1268)
Q Consensus 763 el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~ 829 (1268)
.+..++.+....-.+-+-.-+....+-..+....+.+..|+.++...+.+....-..++....++-+
T Consensus 163 ~~R~~ek~n~~AIkKSrpYfE~k~~~t~~le~qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~IHe 229 (426)
T KOG2008|consen 163 RMRQLEKKNKRAIKKSRPYFELKAKYTVQLEQQKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEIHE 229 (426)
T ss_pred HHHHHHHHhHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHH
No 455
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=85.61 E-value=25 Score=35.15 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------------
Q 000820 740 QRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEI------------------------------------ 783 (1268)
Q Consensus 740 ~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~------------------------------------ 783 (1268)
..++.++..++..+.++++.++.++..+...+.+++.-++.++.
T Consensus 5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs 84 (145)
T COG1730 5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS 84 (145)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 000820 784 ---LEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKE 836 (1268)
Q Consensus 784 ---~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~ 836 (1268)
-....++.++-++.+++++.+.+..+++.+.++...+..+.++...+......
T Consensus 85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~~~q~~~~ 140 (145)
T COG1730 85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQLQQKQAA 140 (145)
T ss_pred ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 456
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.61 E-value=0.5 Score=51.95 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=0.0
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYG 985 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~~G 985 (1268)
...+||.....+..|..++..+...++.+..|.. .++-+|++|+||||.+.+
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~-~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFDGNIA-SFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhccCCc-eEEEECCCCCCHHHHHHH
No 457
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=85.55 E-value=50 Score=36.12 Aligned_cols=144 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHH
Q 000820 659 MQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHE 738 (1268)
Q Consensus 659 l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~ 738 (1268)
++..-.+-+-.++++..-...++.........+..+-.++....+.+..-+..+. .+++.+.++..+
T Consensus 218 ~k~DakDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lN-------------nqL~~l~q~fr~ 284 (384)
T KOG0972|consen 218 LKQDAKDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLN-------------NQLASLMQKFRR 284 (384)
T ss_pred hccccHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 739 LQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEM------EILEKSFEQERKALKLQVSELERKLGEATLD 812 (1268)
Q Consensus 739 l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el------~~~~~~le~ei~~l~~~i~~l~~~l~~l~~e 812 (1268)
+..++++++.....+..-+..-...+.+.-.+++.+.+++++- -.-..+..+.+..++.+..++.-++.-+...
T Consensus 285 a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs 364 (384)
T KOG0972|consen 285 ATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHS 364 (384)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHH
Q ss_pred HHH
Q 000820 813 LAT 815 (1268)
Q Consensus 813 l~~ 815 (1268)
+..
T Consensus 365 ~lq 367 (384)
T KOG0972|consen 365 ILQ 367 (384)
T ss_pred HHH
No 458
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=85.43 E-value=32 Score=40.43 Aligned_cols=126 Identities=13% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhcccccCCCCCCCCCCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 598 SKARSAATGSVNGDLSNNVKTHSIELFEKRIQDLSKTVEESQRNADQLLEELH-ERQRQEAKMQEELDDLKDSLRFEKQK 676 (1268)
Q Consensus 598 ~~~~~~~~gs~tGG~~~~~k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~-~l~~e~~~l~~el~~l~~~l~~~~~~ 676 (1268)
.......+|+..+..........+.....++.++++....++..++.++.++. ++..-.+.++++.-..+.--+++.+-
T Consensus 191 ~s~~~~~~~~~~~~~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 191 NSNSSNSGGSSQGSSVSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred CCCCCCCCcccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhchhhhhH
Q 000820 677 LAEVMADHDRLKSLCDEKDTSLQ-VVLLEKRSMEAKMAKLGNQESENN 723 (1268)
Q Consensus 677 l~~l~~e~~~l~~e~~~le~~l~-~l~~e~~~le~~l~~l~~~~~~~~ 723 (1268)
.+-.+.|+..|+.++...+++++ ...+..+++.+.++..+..+..++
T Consensus 271 ~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 271 TELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
No 459
>PRK08116 hypothetical protein; Validated
Probab=85.33 E-value=0.44 Score=53.41 Aligned_cols=50 Identities=16% Similarity=0.313 Sum_probs=0.0
Q ss_pred eeeEeccccCCCCChhhHHhcHHHHHHHHhcccceE--EEeecccCCCccccc
Q 000820 933 KQHMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVC--IFAYGQTGSGKTFTI 983 (1268)
Q Consensus 933 ~~f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~--i~ayG~tgsGKT~t~ 983 (1268)
..++||... .+..+...+..+...++.+..+.... ++-||++|+||||.+
T Consensus 80 ~~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa 131 (268)
T PRK08116 80 RNSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLA 131 (268)
T ss_pred Hhcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHH
No 460
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=85.28 E-value=4.3 Score=48.27 Aligned_cols=148 Identities=14% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccc----------------cccccccceeeecc
Q 000820 836 ELEELREMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNT----------------IEDMKGKIRVYCRL 899 (1268)
Q Consensus 836 ~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~----------------i~~~k~~i~~~~Rv 899 (1268)
....+.+...++.+....+......+......++.+...+.....++... +-.....-..++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 95 (398)
T PTZ00454 16 TERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRI 95 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEec
Q ss_pred cCCCccccccCCceEEEeCCCceeeccCCCCC-----------ceeeEeccccCCCCChhhHHhcH-HHHH-HHHhcccc
Q 000820 900 RPLNEKEDAEKERYVLTSLDEFTVEHPWKDDK-----------VKQHMYDQVFDGYATQEDVFEDT-RYLV-QSAVDGYN 966 (1268)
Q Consensus 900 Rp~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~f~fd~vf~~~~~q~~v~~~~-~~~v-~~~~~G~n 966 (1268)
.+..+++.......|........+....+... .....|+.|-+.+..-+.+-+.+ .|+. ...+..+.
T Consensus 96 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~G 175 (398)
T PTZ00454 96 LSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIG 175 (398)
T ss_pred ccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcC
Q ss_pred ----eEEEeecccCCCccccc
Q 000820 967 ----VCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 967 ----~~i~ayG~tgsGKT~t~ 983 (1268)
..|+-||++|+|||+..
T Consensus 176 l~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCCceEEEECCCCCCHHHHH
No 461
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=85.15 E-value=69 Score=35.74 Aligned_cols=260 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Q 000820 631 LSKTVEESQRNADQLL-EELHERQRQEA-----------KMQEELDDLKDSLRFEKQ------KLAEVMADHDRLKSLCD 692 (1268)
Q Consensus 631 L~~~l~e~~~~l~~l~-~~l~~l~~e~~-----------~l~~el~~l~~~l~~~~~------~l~~l~~e~~~l~~e~~ 692 (1268)
++-+++.-..-++.++ ++-..+-.+.. .++...+.+.+++...+. .+..+..-+..++.-.+
T Consensus 24 lEGEleARd~VIdaLKraqhkd~fiE~kYGK~NinDP~~ALqRDf~~l~Ek~D~EK~p~ct~spl~iL~~mM~qcKnmQe 103 (561)
T KOG1103|consen 24 LEGELEARDDVIDALKRAQHKDLFIEAKYGKLNINDPFAALQRDFAILGEKIDEEKIPQCTESPLDILDKMMAQCKNMQE 103 (561)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHhccccccccceeccChhHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhch-hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 693 EKDTSLQVVLLEKRSMEAKMAKLGNQ-ESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKI 771 (1268)
Q Consensus 693 ~le~~l~~l~~e~~~le~~l~~l~~~-~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l 771 (1268)
.....+..++.....+-..++..... .....+..+....++.+...|+.+++--.++....+.....+..++.+.+.+-
T Consensus 104 ~~~s~LaAaE~khrKli~dLE~dRe~haqdaaeGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RH 183 (561)
T KOG1103|consen 104 NAASLLAAAEKKHRKLIKDLEADREAHAQDAAEGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRH 183 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHH
Q 000820 772 SKLEKKT-EEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELE-ELREMKEDIDR 849 (1268)
Q Consensus 772 ~~le~~~-~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~-el~~~~~~l~~ 849 (1268)
+.+--.+ -+..+...+..++......-.-.+++.......--..+-.+.+.--+--.+.+..+.++. +...+..++++
T Consensus 184 eqis~mLilEcKka~~KaaEegqKA~ei~Lklekdksr~~k~eee~aaERerglqteaqvek~i~EfdiEre~LRAel~r 263 (561)
T KOG1103|consen 184 EQISLMLILECKKALLKAAEEGQKAEEIMLKLEKDKSRTKKGEEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELER 263 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhccCccccCCChHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcccccccccccee
Q 000820 850 KNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIRV 895 (1268)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~~ 895 (1268)
.+....-+..+......-..+.-...+-.+...+ ++|.+.|
T Consensus 264 ee~r~K~lKeEmeSLkeiVkdlEA~hQh~~pNeq-----Lk~pvtv 304 (561)
T KOG1103|consen 264 EEKRQKMLKEEMESLKEIVKDLEADHQHLRPNEQ-----LKGPVTV 304 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcccc-----ccCceee
No 462
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=85.11 E-value=1.1e+02 Score=38.06 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhch
Q 000820 640 RNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMA-KLGNQ 718 (1268)
Q Consensus 640 ~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~-~l~~~ 718 (1268)
.++..+.+...+..+-...+.+-.+...........+++.+...+.--.-...++..+...+....+.+-..++ +-++.
T Consensus 840 ~K~~~l~kns~k~~ei~s~lke~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~ 919 (1259)
T KOG0163|consen 840 RKINALLKNSLKTIEILSRLKEGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQ 919 (1259)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 719 ESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQ 798 (1268)
Q Consensus 719 ~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~ 798 (1268)
.++++...+.-+..+.+-+.-+.+-.+..++.+....+.+.-.....+.+++.+.-+.+..-..+..+++..+.++--.+
T Consensus 920 ~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~eee~k~ 999 (1259)
T KOG0163|consen 920 IEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEAEEEAKR 999 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000820 799 VSELERKLGEATLDLATLKST 819 (1268)
Q Consensus 799 i~~l~~~l~~l~~el~~l~~e 819 (1268)
-..++++.....-.+.-..+.
T Consensus 1000 q~~~Eqer~D~~la~RlA~sd 1020 (1259)
T KOG0163|consen 1000 QNQLEQERRDHELALRLANSD 1020 (1259)
T ss_pred HhHHHHHHHHHHHHHHHhhcc
No 463
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=85.07 E-value=60 Score=39.29 Aligned_cols=161 Identities=14% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 617 KTHSIELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDT 696 (1268)
Q Consensus 617 k~~~l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~ 696 (1268)
+..++..++.=++.-+.+.++..+..+..+++..+.+.+..+.+.+.+..+..+...+.+.++...+..++...-+....
T Consensus 190 ~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak~~pe~ae~~~~ 269 (489)
T PF05262_consen 190 KDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAKKLPEPAEAQQK 269 (489)
T ss_pred cccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCcchhhhhhh
Q ss_pred HHHH--HHHHHHHHHHHHHHhhchhhhhHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 000820 697 SLQV--VLLEKRSMEAKMAKLGNQESENNAEKNL-VLTNNQTLHELQRELKICNEELHAEKENVK-KFLNEKVLLEQKIS 772 (1268)
Q Consensus 697 ~l~~--l~~e~~~le~~l~~l~~~~~~~~~~~e~-~~~~~~~l~~l~~el~~l~~el~~~~~~~~-~l~~el~~l~~~l~ 772 (1268)
.... .+.+.++++..-.+.....++.....+. .+.+..+.+.-+...+....+.......+. +++..+++.+.+..
T Consensus 270 ~edek~aE~~kkE~EKaq~E~~k~~Eea~kake~~aee~k~Eak~~~~~ae~K~~Eaq~er~~iAkD~qk~~~e~~~e~~ 349 (489)
T PF05262_consen 270 KEDEKLAEEEKKEAEKAQEEAKKKQEEAKKAKEQAAEELKQEAKSQEKEAEKKEEEAQQERKEIAKDQQKLIEEQKAEKK 349 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q ss_pred HHHHH
Q 000820 773 KLEKK 777 (1268)
Q Consensus 773 ~le~~ 777 (1268)
...+.
T Consensus 350 ~~~e~ 354 (489)
T PF05262_consen 350 KKEEE 354 (489)
T ss_pred hhhhh
No 464
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=85.01 E-value=1.2e+02 Score=38.37 Aligned_cols=243 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----------HHHH
Q 000820 651 ERQRQEAKMQEELDDLK------------DSLRFEKQKLAEVMAD---HDRLKSLCDEKDTSLQV-----------VLLE 704 (1268)
Q Consensus 651 ~l~~e~~~l~~el~~l~------------~~l~~~~~~l~~l~~e---~~~l~~e~~~le~~l~~-----------l~~e 704 (1268)
.++.++..+++++-..+ +.++.+++++...-.+ -..|+..+.-+..+... +.++
T Consensus 433 ~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK 512 (762)
T PLN03229 433 ELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK 512 (762)
T ss_pred cHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHH
Q ss_pred HHHHHHHHHHhhch---hhhhHHHHHHHHhhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 000820 705 KRSMEAKMAKLGNQ---ESENNAEKNLVLTNNQ---------TLHELQRELKICNEELHAEKENVKKFLNEKV------- 765 (1268)
Q Consensus 705 ~~~le~~l~~l~~~---~~~~~~~~e~~~~~~~---------~l~~l~~el~~l~~el~~~~~~~~~l~~el~------- 765 (1268)
.+.|.+++++--.+ .-.+..+.+.+..... .-..|.+++.+.=.+.-..-+-.++++..+.
T Consensus 513 ~~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~ 592 (762)
T PLN03229 513 IEKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGA 592 (762)
T ss_pred HHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc
Q ss_pred --------HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH---HHHH
Q 000820 766 --------LLEQKISKLEKKT-EEMEILEKSFEQERKALKLQVSEL---------ERKLGEATLDLATLKSTL---ASRN 824 (1268)
Q Consensus 766 --------~l~~~l~~le~~~-~el~~~~~~le~ei~~l~~~i~~l---------~~~l~~l~~el~~l~~el---~~l~ 824 (1268)
.++.++.++.+++ .+++.-+....-+...+...-... .++++.+++++.+--.+. ..++
T Consensus 593 s~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK 672 (762)
T PLN03229 593 SSGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLK 672 (762)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHH
Q ss_pred HHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccccccccccce
Q 000820 825 MDLAGLESHLKELEEL--REMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYFNTIEDMKGKIR 894 (1268)
Q Consensus 825 ~~~~~l~~~~~~l~el--~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~~~i~~~k~~i~ 894 (1268)
..++.|..++...-.. .+.++.++.+++++.+.+.+.-.. .+|.++++++..........-....|.+.
T Consensus 673 ~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~~~~a~~~-~~lkek~e~l~~e~~~~~~~~~~~~g~~~ 743 (762)
T PLN03229 673 SKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNS-SELKEKFEELEAELAAARETAAESNGSLK 743 (762)
T ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHhcc-HhHHHHHHHHHHHHHHhhcccccccCCcc
No 465
>PRK05642 DNA replication initiation factor; Validated
Probab=84.74 E-value=0.56 Score=51.56 Aligned_cols=47 Identities=11% Similarity=0.290 Sum_probs=0.0
Q ss_pred eEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 935 HMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 935 f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
|+||..+ ...+...+..+..+....-..-...++-||++|+||||.+
T Consensus 16 ~tfdnF~--~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 16 ATFANYY--PGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLL 62 (234)
T ss_pred ccccccC--cCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHH
No 466
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=84.36 E-value=39 Score=36.91 Aligned_cols=128 Identities=12% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 622 ELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVV 701 (1268)
Q Consensus 622 ~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l 701 (1268)
......+.+....++.+..++ ...++.+....+.+..+++.+-++..++..++.+++...+++..-.+.-.+.+...
T Consensus 237 ~nIe~~~~~~~~~Ldklh~ei---t~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eV 313 (384)
T KOG0972|consen 237 KNIEQKVGNVGPYLDKLHKEI---TKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEV 313 (384)
T ss_pred HHHHHhhcchhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHhhch---hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000820 702 LLEKRSMEAKMAKLGNQ---ESENNAEKNLVLTNNQTLHELQRELKICNEELHA 752 (1268)
Q Consensus 702 ~~e~~~le~~l~~l~~~---~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~ 752 (1268)
..+++.+.+++++.... -+-+...+..+..++++...+..++.-+...+-+
T Consensus 314 m~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ehs~lq 367 (384)
T KOG0972|consen 314 MDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVFEHSILQ 367 (384)
T ss_pred HHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehhhHHHHH
No 467
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.34 E-value=37 Score=32.92 Aligned_cols=89 Identities=16% Similarity=0.144 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHH
Q 000820 745 ICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSF----------------------EQERKALKLQVSEL 802 (1268)
Q Consensus 745 ~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~l----------------------e~ei~~l~~~i~~l 802 (1268)
.+..++...-...+.++.++..+..+...++.++.+.+.-..++ .+...+++.+++-+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000820 803 ERKLGEATLDLATLKSTLASRNMDLAGLESH 833 (1268)
Q Consensus 803 ~~~l~~l~~el~~l~~el~~l~~~~~~l~~~ 833 (1268)
+.+++.++.....++..+.+++..+.++-..
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 468
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.18 E-value=42 Score=32.54 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHH-----HHhhHHHHHHHHHHHHH
Q 000820 671 RFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNL-----VLTNNQTLHELQRELKI 745 (1268)
Q Consensus 671 ~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~-----~~~~~~~l~~l~~el~~ 745 (1268)
..+..++...-.+.+.+..++..+....+.++.++...+.-++++...-.+......- .....+....++.+++.
T Consensus 3 ~~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ 82 (121)
T PRK09343 3 ENIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKEL 82 (121)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 746 CNEELHAEKENVKKFLNEKVLLEQKISKLEKK 777 (1268)
Q Consensus 746 l~~el~~~~~~~~~l~~el~~l~~~l~~le~~ 777 (1268)
++.++..++.+...++..+..++.++.++-..
T Consensus 83 ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 83 LELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 469
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=84.10 E-value=92 Score=36.35 Aligned_cols=246 Identities=12% Similarity=-0.001 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 000820 621 IELFEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDR--LKSLCDEKDTSL 698 (1268)
Q Consensus 621 l~~~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~--l~~e~~~le~~l 698 (1268)
...++-.-+.++.+-+...........++..++.++..+-+.+.-+...+...+.++.+.+..++. +....+++-...
T Consensus 212 q~~L~la~~~~~~~~e~~i~~~~~f~~r~~~~E~e~rn~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~ 291 (554)
T KOG4677|consen 212 QDKLQLAEEAVSMHDENVITAVLIFLKRTLSKEIEFRNELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSH 291 (554)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q ss_pred HHHHHHH------HHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 699 QVVLLEK------RSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKIS 772 (1268)
Q Consensus 699 ~~l~~e~------~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~ 772 (1268)
.....-+ ..+..+.+++.-+..-..+..+.+. -++..|+.++.+++.+...++.....--...-.-...+.
T Consensus 292 ~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~q---~q~~~Lrs~~~d~EAq~r~l~s~~~~q~~~~h~~ka~~~ 368 (554)
T KOG4677|consen 292 YREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHIQ---DQYTLLRSQIIDIEAQDRHLESAGQTQIFRKHPRKASIL 368 (554)
T ss_pred HHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHhHHHHHHhhhHhhhhh
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000820 773 KLEKKT-EEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEELREMKEDIDRKN 851 (1268)
Q Consensus 773 ~le~~~-~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el~~~~~~l~~~~ 851 (1268)
..-..+ ..++-...+.+-+-..+...-..++.++.+.+.++.++.+.+....-.- ...+.-.....+...........
T Consensus 369 ~~~~~l~~~~ec~~~e~e~~~~~~~r~~~~~qski~dk~~el~kl~~~l~~r~~~~-s~~~l~~~~~qLt~tl~qkq~~l 447 (554)
T KOG4677|consen 369 NMPLVLTLFYECFYHETEAEGTFSSRVNLKKQSKIPDKQYELTKLAARLKLRAWND-SVDALFTTKNQLTYTLKQKQIGL 447 (554)
T ss_pred hchHHHHHHHHHHHHHHHHhhhhhhhccchhhccCcchHHHHHHHHHHHHHHhhhh-hHHHHhchhHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 852 EQTAAILKMQGAQLSELEV 870 (1268)
Q Consensus 852 ~~~~~~~~~~~~~~~~L~~ 870 (1268)
..+......+...+..|++
T Consensus 448 e~v~~~~~~ln~~lerLq~ 466 (554)
T KOG4677|consen 448 ERVVEILHKLNAPLERLQE 466 (554)
T ss_pred HHHHHHHhhhhhhHHHHHH
No 470
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=84.10 E-value=34 Score=39.99 Aligned_cols=126 Identities=8% Similarity=-0.020 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHH
Q 000820 664 DDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQREL 743 (1268)
Q Consensus 664 ~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el 743 (1268)
..++.++.+.+.++...+.+++.+...+...+.+++.++.++...+.+++..+...+..+...+.--....++.+.+.++
T Consensus 82 ~~~~~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~ 161 (346)
T PRK10476 82 RPYELTVAQAQADLALADAQIMTTQRSVDAERSNAASANEQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQ 161 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 744 KICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFE 789 (1268)
Q Consensus 744 ~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le 789 (1268)
...+.++...+.+.......+..+......+.....++......++
T Consensus 162 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~a~~~~~~a~l~~a~~~l~ 207 (346)
T PRK10476 162 RDAEVSLNQALLQAQAAAAAVGGVDALVAQRAAREAALAIAELHLE 207 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
No 471
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=84.02 E-value=15 Score=31.58 Aligned_cols=68 Identities=15% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 752 AEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKST 819 (1268)
Q Consensus 752 ~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~e 819 (1268)
.++..+..|+..++.+..+++..+...+.+..+.......+...-.++.+|..+++.+..+++....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 472
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=83.95 E-value=11 Score=38.91 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHh
Q 000820 654 RQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLC--DEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLT 731 (1268)
Q Consensus 654 ~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~--~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~ 731 (1268)
.++..+..++.++++++..++.+...++.++..+.... +++...+..+..+++.++.++..++. .......+....
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~--~~~~vs~ee~~~ 149 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS--GSKPVSPEEKEK 149 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCHHHHHH
Q ss_pred hHHHHHHHHHHHHHHHH
Q 000820 732 NNQTLHELQRELKICNE 748 (1268)
Q Consensus 732 ~~~~l~~l~~el~~l~~ 748 (1268)
+......+.......+.
T Consensus 150 ~~~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 150 LEKEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHHHH
No 473
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=83.87 E-value=24 Score=33.26 Aligned_cols=83 Identities=12% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Q 000820 750 LHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSF----------------------EQERKALKLQVSELERKLG 807 (1268)
Q Consensus 750 l~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~l----------------------e~ei~~l~~~i~~l~~~l~ 807 (1268)
+.......+.++.++..+..++..++.++.+...-...+ ...+..++.+++.++..+.
T Consensus 1 ~q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~ 80 (105)
T cd00632 1 VQEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIK 80 (105)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 808 EATLDLATLKSTLASRNMDLAGLES 832 (1268)
Q Consensus 808 ~l~~el~~l~~el~~l~~~~~~l~~ 832 (1268)
.+...+..+..++..++.++.++..
T Consensus 81 ~l~~~~~~l~~~~~elk~~l~~~~~ 105 (105)
T cd00632 81 RLERQEEDLQEKLKELQEKIQQAQK 105 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
No 474
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=83.85 E-value=44 Score=33.58 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH--HHHHHH
Q 000820 769 QKISKLEKKTEEMEILEKSFEQERKALKLQVSELERK--LGEATLDLATLKSTLASRNMDLAGLESHLKELE--ELREMK 844 (1268)
Q Consensus 769 ~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~--l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~--el~~~~ 844 (1268)
.++..+..++..+.+....+.+.+...+++|..|... +.++++++..+..+.......+..+.+-..... +.....
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~~vtpedk~~v~ 158 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAGTNHVTPEDKEQVY 158 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 845 EDIDRKNEQTAAILKMQGAQLSELEV 870 (1268)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~~~~~L~~ 870 (1268)
...++.-.++.+........+..+.+
T Consensus 159 ~~y~~~~~~wrk~krmf~ei~d~~~e 184 (201)
T KOG4603|consen 159 REYQKYCKEWRKRKRMFREIIDKLLE 184 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
No 475
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=42 Score=32.15 Aligned_cols=104 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 676 KLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKE 755 (1268)
Q Consensus 676 ~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~ 755 (1268)
+....-.+.+.+..++..+....+.++.+++.++..++++..--++..-...-=..+-.. ....-..++++.++.++-
T Consensus 7 ~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~--~k~~~~~eL~er~E~Le~ 84 (119)
T COG1382 7 EVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKV--SKEEAVDELEERKETLEL 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhh--hHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 756 NVKKFLNEKVLLEQKISKLEKKTEEM 781 (1268)
Q Consensus 756 ~~~~l~~el~~l~~~l~~le~~~~el 781 (1268)
++..++++-..++.++++++..+...
T Consensus 85 ri~tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 85 RIKTLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 476
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=83.72 E-value=2.3 Score=36.05 Aligned_cols=51 Identities=20% Similarity=0.133 Sum_probs=0.0
Q ss_pred EEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEEEEeeeecCCCC
Q 000820 287 VFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLFECRKVVTGSKA 338 (1268)
Q Consensus 287 V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~~~~~~~~~~~~ 338 (1268)
|..+++....|.+.+.++..||+++.|.+.|+... .|.|.--++.+..+.+
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~-~~~L~h~~k~ldlslp 51 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPS-SYDLKHNNKPLDLSLP 51 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT--GG-G-EEEETTEEESSS-B
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcCCCcc-ceEEEECCEEeccccc
No 477
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=83.64 E-value=60 Score=35.25 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 691 CDEKDTSLQVVLLEKRSMEAKMAKLGNQ-ESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQ 769 (1268)
Q Consensus 691 ~~~le~~l~~l~~e~~~le~~l~~l~~~-~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~ 769 (1268)
.+.++..+..+...+.-...++..|.-. .-+...=......+...+..++.++..++.++...+...+..+.+ ...
T Consensus 99 ~~~w~~al~na~a~lehq~~R~~NLeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~---~~~ 175 (221)
T PF05700_consen 99 VEAWKEALDNAYAQLEHQRLRLENLELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEE---AGE 175 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 770 KISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLA 814 (1268)
Q Consensus 770 ~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~ 814 (1268)
++..|+.+..++-...-+++..+..++.++.+++.+....++..+
T Consensus 176 ~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~~~~~~ 220 (221)
T PF05700_consen 176 ELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAELKENQQ 220 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
No 478
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.62 E-value=27 Score=36.82 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhch-hhhhHHH
Q 000820 647 EELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQ-ESENNAE 725 (1268)
Q Consensus 647 ~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~-~~~~~~~ 725 (1268)
.....++.....++.+++.++..+..++.+++.....+..- .+-..+-++++.+..+++.+..++.....- -+.++..
T Consensus 62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000820 726 KNLVLTNNQTLHELQRELKICNEELHA 752 (1268)
Q Consensus 726 ~e~~~~~~~~l~~l~~el~~l~~el~~ 752 (1268)
.+........+....+.+..+..=+..
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~~~~~ 167 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKSYLKK 167 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH
No 479
>cd01274 AIDA-1b AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b Phosphotyrosine-binding (PTB) domain. AIDA-1b is an amyloid-beta precursor protein interacting protein. It consists of ankyrin repeats, a SAM domain and a C-terminal PTB domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=83.61 E-value=3.3 Score=40.49 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=0.0
Q ss_pred CCCCceEEEEEecCceEEECCCccchhccccccceeeccCCCC----ceEEEEEEcCee---eEEEEEcCc-HHHHHHHH
Q 000820 514 GLLPGRIVLGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNS----AVFFKMRVAGVL---HIFQFETKQ-GEEICVAL 585 (1268)
Q Consensus 514 ~~~p~~v~LgIn~~GI~il~~~~ke~l~~~~~~~I~s~~~~~~----~~~~~i~~~~~~---~~~~feT~q-~~eI~~li 585 (1268)
+..+.++.|-|+.+||.++|+.+++.+..+|...|. |...+. .|-|.-+.+... |.|...+.+ |.+|...|
T Consensus 37 ~~k~~~V~L~IS~~Gv~v~d~~tk~~i~~~~i~~IS-f~~~D~~d~~~FayIakd~~~~~~CHvF~~~~~~~A~~I~~ti 115 (127)
T cd01274 37 WETIPRVTLDLTCNGVKFIDETFKTLIDGHGIYNIR-CVCQDREDLNFFAYITKDTENRHYCHVFCVLTSGLAAEIITTL 115 (127)
T ss_pred cCCCCEEEEEEeCCeEEEEECCCCeEEEEeeeeEEE-EEecCCCCceEEEEEeeCCCCCEEEEEEEcCCHHHHHHHHHHH
Q ss_pred HH
Q 000820 586 QT 587 (1268)
Q Consensus 586 ~~ 587 (1268)
..
T Consensus 116 gq 117 (127)
T cd01274 116 GQ 117 (127)
T ss_pred HH
No 480
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.58 E-value=73 Score=34.79 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 633 KTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKM 712 (1268)
Q Consensus 633 ~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l 712 (1268)
.+..++....+.+.+.+..+.+-..++..+..++...+.+.-.....+..--..+...+.....-+...-..++.+.+..
T Consensus 51 ~eF~e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 51 LEFAAIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred -HHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 000820 713 -AKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT-EEMEILEKSFEQ 790 (1268)
Q Consensus 713 -~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~-~el~~~~~~le~ 790 (1268)
...-....+.....+.+..+-..-...+.+.+.+.+.+..-.+++..++.+++.++.+.+...+.+ ++...-......
T Consensus 131 ~~~yl~~Lke~~~Y~~slk~vlK~RdqkQ~d~E~l~E~l~~rre~~~kLe~~ie~~~~~ve~f~~~~~~E~~~Fe~~K~~ 210 (240)
T cd07667 131 TEDFLPVLREYILYSESMKNVLKKRDQVQAEYEAKLEAVALRKEERPKVPTDVEKCQDRVECFNADLKADMERWQNNKRQ 210 (240)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHH
Q 000820 791 ERKALKLQVSELERKL 806 (1268)
Q Consensus 791 ei~~l~~~i~~l~~~l 806 (1268)
+....=...++..-+.
T Consensus 211 e~k~~l~~~Ad~~i~f 226 (240)
T cd07667 211 DFRQLLMGMADKNIQY 226 (240)
T ss_pred HHHHHHHHHHHHHHHH
No 481
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=83.58 E-value=1.5 Score=38.96 Aligned_cols=45 Identities=22% Similarity=0.156 Sum_probs=0.0
Q ss_pred CcceEEEEecCCcEEEEEeccccCHHHHHHHHHHHhCCCCCCceEEE
Q 000820 281 RKLTTIVFFLDETFEEISYDMATTVSDAVEELAGIIKLSAHSSFSLF 327 (1268)
Q Consensus 281 ~~~~~~V~l~dg~~~~v~vd~~tTv~ev~~~l~~~lgL~~~~~F~L~ 327 (1268)
..+.++|..+||..+ |.+++..|+.++.+.|...+++... .|+||
T Consensus 3 ~~milRvrS~dG~~R-ie~~~~~t~~~L~~kI~~~l~~~~~-~~~L~ 47 (80)
T PF11543_consen 3 SSMILRVRSKDGMKR-IEVSPSSTLSDLKEKISEQLSIPDS-SQSLS 47 (80)
T ss_dssp ---EEEEE-SSEEEE-EEE-TTSBHHHHHHHHHHHS---TT-T---B
T ss_pred ccEEEEEECCCCCEE-EEcCCcccHHHHHHHHHHHcCCCCc-ceEEE
No 482
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.53 E-value=1.5 Score=51.36 Aligned_cols=56 Identities=23% Similarity=0.389 Sum_probs=0.0
Q ss_pred hhHHhcHHHHHHHHhcccceE-EEeecccCCCcccccccCCCCCCCcHHHHHHHHHHHHhcCCce-EEEEEE
Q 000820 948 EDVFEDTRYLVQSAVDGYNVC-IFAYGQTGSGKTFTIYGSECNPGITPRAISELFRILKKENNKF-SFSLKA 1017 (1268)
Q Consensus 948 ~~v~~~~~~~v~~~~~G~n~~-i~ayG~tgsGKT~t~~G~~~~~Gli~r~~~~lf~~~~~~~~~~-~~~v~~ 1017 (1268)
++-++.+...+..++.|.-.. ++.||+||+|||.|+ +.+++.+....... .+.|.|
T Consensus 23 e~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~~~yINc 80 (366)
T COG1474 23 EEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVEVVYINC 80 (366)
T ss_pred HHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCceEEEee
No 483
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=83.40 E-value=47 Score=34.47 Aligned_cols=99 Identities=12% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHH
Q 000820 664 DDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQREL 743 (1268)
Q Consensus 664 ~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el 743 (1268)
+.+-..+.+-...+...+-.+.+|+.+...++..+...+.+...|...+.-...+............ .+...|+.+.
T Consensus 87 E~~Y~~F~~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r---~ea~aL~~e~ 163 (192)
T PF11180_consen 87 EAIYRDFAQQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQAR---QEAQALEAER 163 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000820 744 KICNEELHAEKENVKKFLNEKV 765 (1268)
Q Consensus 744 ~~l~~el~~~~~~~~~l~~el~ 765 (1268)
......|..+..++..|+.+.+
T Consensus 164 ~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 164 RAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
No 484
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=83.37 E-value=0.63 Score=56.22 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=0.0
Q ss_pred eEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 935 HMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 935 f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
|+||..+- ..++...|..+..++..--. +|. +|-||++|+||||.+
T Consensus 102 ~tFdnFv~-g~~n~~a~~~~~~~~~~~~~-~n~-l~lyG~~G~GKTHLl 147 (440)
T PRK14088 102 YTFENFVV-GPGNSFAYHAALEVAKNPGR-YNP-LFIYGGVGLGKTHLL 147 (440)
T ss_pred Cccccccc-CCchHHHHHHHHHHHhCcCC-CCe-EEEEcCCCCcHHHHH
No 485
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=83.19 E-value=80 Score=34.98 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000820 670 LRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEE 749 (1268)
Q Consensus 670 l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~e 749 (1268)
+++++.+-.++..+++-+.++..-++.....--.+++.|..-+.+|+..+-.--.....+.....++.++.++...++.+
T Consensus 2 Vdd~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~elneEkrtLeRE 81 (351)
T PF07058_consen 2 VDDVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAGGAAANAVRDYQRQVQELNEEKRTLERE 81 (351)
T ss_pred chhhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 750 LHAEK----------------------------ENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQV 799 (1268)
Q Consensus 750 l~~~~----------------------------~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i 799 (1268)
+...+ ++..-++.+++.|+.+++-.+..-..-.+..++++-.++.|++-+
T Consensus 82 LARaKV~aNRVA~vvANEWKD~nDkvMPVKqWLEERR~lQgEmQ~LrDKLAiaERtAkaEaQLkeK~klRLK~LEe~L 159 (351)
T PF07058_consen 82 LARAKVSANRVATVVANEWKDENDKVMPVKQWLEERRFLQGEMQQLRDKLAIAERTAKAEAQLKEKLKLRLKVLEEGL 159 (351)
T ss_pred HHHhhhhhhhhhhhhcccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
No 486
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.15 E-value=16 Score=38.85 Aligned_cols=97 Identities=12% Similarity=0.147 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 696 TSLQVVLLEKRSMEAKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLE 775 (1268)
Q Consensus 696 ~~l~~l~~e~~~le~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le 775 (1268)
..+-.+-.++..+++. +....+...+....+....++++......++..++.+++.....++..+++...++.+.+.+.
T Consensus 114 ~R~~~ll~~l~~l~~~-~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~ 192 (216)
T KOG1962|consen 114 RRLHTLLRELATLRAN-EKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ 192 (216)
T ss_pred HHHHHHHHHHHHHHhh-HHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000820 776 KKTEEMEILEKSFEQERK 793 (1268)
Q Consensus 776 ~~~~el~~~~~~le~ei~ 793 (1268)
.+...+.++-..+++++.
T Consensus 193 ~EydrLlee~~~Lq~~i~ 210 (216)
T KOG1962|consen 193 DEYDRLLEEYSKLQEQIE 210 (216)
T ss_pred cHHHHHHHHHHHHHHHHh
No 487
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=83.12 E-value=79 Score=34.84 Aligned_cols=240 Identities=10% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 624 FEKRIQDLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLL 703 (1268)
Q Consensus 624 ~k~~l~eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~ 703 (1268)
......++......+...+..+.....+..............+...............................+..+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T smart00283 2 VSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVS 81 (262)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhchhhhhHHHHHHHH------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 704 EKRSMEAKMAKLGNQESENNAEKNLVL------------------TNNQTLHELQRELKICNEELHAEKENVKKFLNEKV 765 (1268)
Q Consensus 704 e~~~le~~l~~l~~~~~~~~~~~e~~~------------------~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~ 765 (1268)
.+..+......+......+....+... .+..-....+.-............+.++.......
T Consensus 82 ~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~~~~~~ 161 (262)
T smart00283 82 AVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEETN 161 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-HHHH
Q 000820 766 LLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEEL-REMK 844 (1268)
Q Consensus 766 ~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el-~~~~ 844 (1268)
.....+......+....................+.++...+..+....................+.....++... .+..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 241 (262)
T smart00283 162 EAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEIS 241 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000820 845 EDIDRKNEQTAAILKMQGA 863 (1268)
Q Consensus 845 ~~l~~~~~~~~~~~~~~~~ 863 (1268)
....+.......+......
T Consensus 242 ~~~~~l~~~~~~l~~~~~~ 260 (262)
T smart00283 242 AAAEELSGLAEELKELVEQ 260 (262)
T ss_pred HHHHHHHHHHHHHHHHHhh
No 488
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=83.03 E-value=80 Score=34.81 Aligned_cols=245 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 630 DLSKTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLEKRSME 709 (1268)
Q Consensus 630 eL~~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e~~~le 709 (1268)
++.....++......+.....++.....++....+.......++..................................+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (262)
T smart00283 1 DVSEAVEEIAAGAEEQAEELEELAERMEELSASIEEVAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAV 80 (262)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 710 AKMAKLGNQESENNAEKNLVLTNNQTLHELQRELKICNEE-----------LHAEKENVKKFLNEKVLLEQKISKLEKKT 778 (1268)
Q Consensus 710 ~~l~~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~e-----------l~~~~~~~~~l~~el~~l~~~l~~le~~~ 778 (1268)
..+..+...........+.+.....+...+-....-.-.. ....+.-..+.+....+...-+..+....
T Consensus 81 ~~i~~i~~~~~~i~~~~~~i~~~a~~~~~la~na~ieA~~ag~~g~~~~~va~~I~~la~~t~~~~~ev~~~~~~~~~~~ 160 (262)
T smart00283 81 SAVEELEESSDEIGEIVSVIDDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAERSAESAKEIESLIKEIQEET 160 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHHH
Q 000820 779 EEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELE----ELREMKEDIDRKNEQT 854 (1268)
Q Consensus 779 ~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~----el~~~~~~l~~~~~~~ 854 (1268)
.............+......+......+......+..+...+..+............+.. .+.....++...-.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~ 240 (262)
T smart00283 161 NEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEI 240 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhHH
Q 000820 855 AAILKMQGAQLSELEVLYKE 874 (1268)
Q Consensus 855 ~~~~~~~~~~~~~L~~~~~~ 874 (1268)
.....++......|.....+
T Consensus 241 ~~~~~~l~~~~~~l~~~~~~ 260 (262)
T smart00283 241 SAAAEELSGLAEELKELVEQ 260 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhh
No 489
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.99 E-value=17 Score=37.70 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHH
Q 000820 741 RELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKT--EEMEILEKSFEQERKALKLQVSELER--------KLGEAT 810 (1268)
Q Consensus 741 ~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~--~el~~~~~~le~ei~~l~~~i~~l~~--------~l~~l~ 810 (1268)
.++..+..++..+.+++..++.+...++.++..+.... .++...+..++.++..++.++..++. ++..+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 151 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLE 151 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH
Q 000820 811 LDLATLKSTLASRNM 825 (1268)
Q Consensus 811 ~el~~l~~el~~l~~ 825 (1268)
.+.......-.....
T Consensus 152 ~~~~~~~k~w~kRKr 166 (169)
T PF07106_consen 152 KEYKKWRKEWKKRKR 166 (169)
T ss_pred HHHHHHHHHHHHHHH
No 490
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=82.88 E-value=11 Score=45.01 Aligned_cols=148 Identities=20% Similarity=0.189 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc------cccccccccceeeecccC-------
Q 000820 835 KELEELREMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYF------NTIEDMKGKIRVYCRLRP------- 901 (1268)
Q Consensus 835 ~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~------~~i~~~k~~i~~~~RvRp------- 901 (1268)
+....+.+...++.....++......+...++.++.+..++......+. ..+.+.-+.-++.++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~~~g~~~~~~ 80 (389)
T PRK03992 1 ERLEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKSPPLIVATVLEVLDDGRVVVKSSGGPQFLVN 80 (389)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEeCCCeEEEEECCCCEEEEe
Q ss_pred ----CCccccccCCceEEEeCCCceeeccCCCCCceeeEeccccCCCCChhhHH--hcHHHHHHHHhc------------
Q 000820 902 ----LNEKEDAEKERYVLTSLDEFTVEHPWKDDKVKQHMYDQVFDGYATQEDVF--EDTRYLVQSAVD------------ 963 (1268)
Q Consensus 902 ----~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~--~~~~~~v~~~~~------------ 963 (1268)
+.......+....+.......+...+.........++-+..++.+-++|. +....-|..++.
T Consensus 81 ~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~ 160 (389)
T PRK03992 81 VSPFIDREKLKPGARVALNQQSLAIVEVLPSEKDPRVQAMEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEV 160 (389)
T ss_pred ccccCCHhHCCCCCEEEEcCcchhhhhcccccccchhheeeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhc
Q ss_pred --ccceEEEeecccCCCcccc
Q 000820 964 --GYNVCIFAYGQTGSGKTFT 982 (1268)
Q Consensus 964 --G~n~~i~ayG~tgsGKT~t 982 (1268)
.....|+-||++|+|||+.
T Consensus 161 g~~~p~gvLL~GppGtGKT~l 181 (389)
T PRK03992 161 GIEPPKGVLLYGPPGTGKTLL 181 (389)
T ss_pred CCCCCCceEEECCCCCChHHH
No 491
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=82.79 E-value=20 Score=30.86 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 759 KFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMD 826 (1268)
Q Consensus 759 ~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~ 826 (1268)
.++.++..|+..+..+..++.........+..+.+....++...-.++..+..+++.++.+++....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~~ 69 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRAQ 69 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 492
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=82.45 E-value=68 Score=33.59 Aligned_cols=162 Identities=12% Similarity=0.193 Sum_probs=0.0
Q ss_pred HhhchhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 714 KLGNQESENNAEKNLVLTNNQTLHELQRELKICNEELHAE---------KENVKKFLNEKVLLEQKISKLEKKTEEMEIL 784 (1268)
Q Consensus 714 ~l~~~~~~~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~---------~~~~~~l~~el~~l~~~l~~le~~~~el~~~ 784 (1268)
++..-.++.......+..+..++..++..+.+++..+..- ...-..-...++.+-.++++-+..-+++...
T Consensus 3 rl~a~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qv 82 (182)
T PF15035_consen 3 RLDAYQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQV 82 (182)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 000820 785 EKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELE-----ELREMKEDIDRKNEQTAAILK 859 (1268)
Q Consensus 785 ~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~-----el~~~~~~l~~~~~~~~~~~~ 859 (1268)
..-+..+++........|..++..+..+...+..++...+.....-+......- .+-.+=.++.........+..
T Consensus 83 N~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~~~~y~~~eh~rll~LWr~v~~lRr~f~elr~ 162 (182)
T PF15035_consen 83 NALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEENFNQYLSSEHSRLLSLWREVVALRRQFAELRT 162 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHhHHH
Q 000820 860 MQGAQLSELEVLYKEE 875 (1268)
Q Consensus 860 ~~~~~~~~L~~~~~~~ 875 (1268)
..+..+..+..++...
T Consensus 163 ~TerdL~~~r~e~~r~ 178 (182)
T PF15035_consen 163 ATERDLSDMRAEFART 178 (182)
T ss_pred HHHhhHHHHHHHHHHH
No 493
>PRK09087 hypothetical protein; Validated
Probab=82.42 E-value=0.68 Score=50.51 Aligned_cols=44 Identities=20% Similarity=0.159 Sum_probs=0.0
Q ss_pred eEeccccCCCCChhhHHhcHHHHHHHHhcccceEEEeecccCCCccccc
Q 000820 935 HMYDQVFDGYATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTI 983 (1268)
Q Consensus 935 f~fd~vf~~~~~q~~v~~~~~~~v~~~~~G~n~~i~ayG~tgsGKT~t~ 983 (1268)
|+||..+...++.. +|. ++.....-.+..++-||++||||||.+
T Consensus 18 ~~~~~Fi~~~~N~~-a~~----~l~~~~~~~~~~l~l~G~~GsGKThLl 61 (226)
T PRK09087 18 YGRDDLLVTESNRA-AVS----LVDHWPNWPSPVVVLAGPVGSGKTHLA 61 (226)
T ss_pred CChhceeecCchHH-HHH----HHHhcccCCCCeEEEECCCCCCHHHHH
No 494
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=82.41 E-value=9.8 Score=44.93 Aligned_cols=72 Identities=14% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 633 KTVEESQRNADQLLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADHDRLKSLCDEKDTSLQVVLLE 704 (1268)
Q Consensus 633 ~~l~e~~~~l~~l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~~~l~~e~~~le~~l~~l~~e 704 (1268)
+.+.+..+-.+....++.+++.+.++++.+++++..+++++++.+...+.++.+++.++++.+..++++.+.
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~~ 150 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQAQRQLEELRET 150 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHhh
No 495
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=82.40 E-value=78 Score=34.27 Aligned_cols=162 Identities=16% Similarity=0.241 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 732 NNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERKLGEATL 811 (1268)
Q Consensus 732 ~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~ 811 (1268)
+...+++++. ..++...+..--..+-++-..-.-..+...+.-+.--++.+..+-++..++.+..++......++....
T Consensus 55 i~~k~~e~r~-~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~~~~~Lnnvas 133 (338)
T KOG3647|consen 55 IGDKIEELRK-ARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQSSRAQLNNVAS 133 (338)
T ss_pred HHHHHHHHHH-HHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhc
Q 000820 812 DLATLKSTLASRNMDLAGLESHLKELE--------ELREMKEDIDRKNEQTAAILKMQGAQLSELEVLYKEEQILRKRYF 883 (1268)
Q Consensus 812 el~~l~~el~~l~~~~~~l~~~~~~l~--------el~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~r~kl~ 883 (1268)
+...+.+.++..+.+++..+..+..|+ +-+.-.++++++-..+---...+.-....+....+......+.++
T Consensus 134 dea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~nl~yL~~qldd~~rse~~rqeeae 213 (338)
T KOG3647|consen 134 DEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHNLDYLKSQLDDRTRSEPIRQEEAE 213 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHH
Q ss_pred cccccccccce
Q 000820 884 NTIEDMKGKIR 894 (1268)
Q Consensus 884 ~~i~~~k~~i~ 894 (1268)
+.+.-+..+++
T Consensus 214 nsm~~i~ekl~ 224 (338)
T KOG3647|consen 214 NSMPFIPEKLI 224 (338)
T ss_pred hcchhhHHHhh
No 496
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=82.33 E-value=69 Score=33.62 Aligned_cols=111 Identities=14% Similarity=0.133 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 722 NNAEKNLVLTNNQTLHELQRELKICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSE 801 (1268)
Q Consensus 722 ~~~~~e~~~~~~~~l~~l~~el~~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~ 801 (1268)
+.-+...++.++.++.+.+.-+.+....+...+.............+.++..|..-+..........+.-....+.++.+
T Consensus 62 L~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~~l~~a~~nl~~a~~~a~~AQ~el~e 141 (188)
T PF05335_consen 62 LAGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKAALKAAQANLANAEQVAEGAQQELAE 141 (188)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 802 LERKLGEATLDLATLKSTLASRNMDLAGLES 832 (1268)
Q Consensus 802 l~~~l~~l~~el~~l~~el~~l~~~~~~l~~ 832 (1268)
...-+...+...+.|...+.....+++..+.
T Consensus 142 K~qLLeaAk~Rve~L~~QL~~Ar~D~~~tk~ 172 (188)
T PF05335_consen 142 KTQLLEAAKRRVEELQRQLQAARADYEKTKK 172 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=82.31 E-value=1e+02 Score=36.82 Aligned_cols=220 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--------------------
Q 000820 645 LLEELHERQRQEAKMQEELDDLKDSLRFEKQKLAEVMADH-DRLKSLCDEKDTSLQVVLL-------------------- 703 (1268)
Q Consensus 645 l~~~l~~l~~e~~~l~~el~~l~~~l~~~~~~l~~l~~e~-~~l~~e~~~le~~l~~l~~-------------------- 703 (1268)
+.-....+..-.......+..+...++.++..+......+ +++..........+.....
T Consensus 69 l~l~~~~ldevk~h~d~~~~~l~~~i~~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 148 (424)
T PF03915_consen 69 LSLNEEPLDEVKKHIDSGIGGLSEEIEELKQELDEQQETILQRVKERQQSAAKPVARPAAAPPPSSAPSSSSSPQSTSKS 148 (424)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecccccchhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCcCCCCcc
Q ss_pred ---HHHHHHHHHHHhhch-hhhhHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 704 ---EKRSMEAKMAKLGNQ-ESENNAEKNLVLTNNQTLHELQRELKICN--EELHAEKENVKKFLNEKVLLEQKISKLEKK 777 (1268)
Q Consensus 704 ---e~~~le~~l~~l~~~-~~~~~~~~e~~~~~~~~l~~l~~el~~l~--~el~~~~~~~~~l~~el~~l~~~l~~le~~ 777 (1268)
++..+..++..+++. ........+.+.....++..++..-.... ........-...|..+.+.+-.++.+|+.-
T Consensus 149 ~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~~~~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~ 228 (424)
T PF03915_consen 149 DLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNASGDSNRAYMESGKKKLSEESDRLLTKVDDLQDL 228 (424)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000820 778 TEEMEILEKS-----FEQERKALKLQVSELERKLGEATLDLATLKSTLA-SRNMDLAGLESHLKELEELREMKEDIDRKN 851 (1268)
Q Consensus 778 ~~el~~~~~~-----le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~-~l~~~~~~l~~~~~~l~el~~~~~~l~~~~ 851 (1268)
++++...... ...+++.+..++..+...+..++.-+...+-... ..+.+++.+-++.+-+....++..++.+-.
T Consensus 229 VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 229 VEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 000820 852 EQTAAILKMQGAQ 864 (1268)
Q Consensus 852 ~~~~~~~~~~~~~ 864 (1268)
.++......++..
T Consensus 309 ~k~~etf~lveq~ 321 (424)
T PF03915_consen 309 KKASETFALVEQC 321 (424)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
No 498
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=82.26 E-value=15 Score=38.78 Aligned_cols=103 Identities=16% Similarity=0.239 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 789 EQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLAGLESHLKELEELREMKEDIDRKNEQTAAILKMQGAQLSEL 868 (1268)
Q Consensus 789 e~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~~l~~~~~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L 868 (1268)
.+.....+.++..++++++.++..+..++.+++........-.++...++++.++..++.++..++......--..+..+
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~ 140 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEKL 140 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Q ss_pred HHHhHHHHHHHhhhccccccccc
Q 000820 869 EVLYKEEQILRKRYFNTIEDMKG 891 (1268)
Q Consensus 869 ~~~~~~~~~~r~kl~~~i~~~k~ 891 (1268)
.+........-.++.+.|.-++.
T Consensus 141 ~~~~~~~~~~anrwTDNI~~l~~ 163 (188)
T PF03962_consen 141 KEEIKIAKEAANRWTDNIFSLKS 163 (188)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHH
No 499
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=82.25 E-value=84 Score=35.92 Aligned_cols=143 Identities=18% Similarity=0.246 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 750 LHAEKENVKKFLNEKVLLEQKISKLEKKT-EEMEILEKSFEQERKALKLQVSELERKLGEATLDLATLKSTLASRNMDLA 828 (1268)
Q Consensus 750 l~~~~~~~~~l~~el~~l~~~l~~le~~~-~el~~~~~~le~ei~~l~~~i~~l~~~l~~l~~el~~l~~el~~l~~~~~ 828 (1268)
+..+.++++++..-...+++.++.|++++ .++.--.+.+++|.=..+.--+++....+-.+.++..++.+++..+..+.
T Consensus 262 l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeerva 341 (455)
T KOG3850|consen 262 LDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEERVA 341 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHhhhccccccccccceeee
Q 000820 829 GLESHLKELEELREMKEDIDRKNEQTAAILKMQGAQLSELEVLYK--EEQILRKRYFNTIEDMKGKIRVYC 897 (1268)
Q Consensus 829 ~l~~~~~~l~el~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~~~--~~~~~r~kl~~~i~~~k~~i~~~~ 897 (1268)
.+..++.+++.+.++.....+.+++-.++.+...--+... .....--+.-|.+-.+-.-+-|+|
T Consensus 342 -----YQsyERaRdIqEalEscqtrisKlEl~qq~qqv~Q~e~~~na~a~~llgk~iNiiLalm~VlLvfV 407 (455)
T KOG3850|consen 342 -----YQSYERARDIQEALESCQTRISKLELQQQQQQVVQLEGLENAVARRLLGKFINIILALMTVLLVFV 407 (455)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=82.19 E-value=25 Score=29.46 Aligned_cols=61 Identities=25% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000820 745 ICNEELHAEKENVKKFLNEKVLLEQKISKLEKKTEEMEILEKSFEQERKALKLQVSELERK 805 (1268)
Q Consensus 745 ~l~~el~~~~~~~~~l~~el~~l~~~l~~le~~~~el~~~~~~le~ei~~l~~~i~~l~~~ 805 (1268)
++...+.......+.++.++...+...-..+.++.+.+.+...+..++..++.++++++.+
T Consensus 1 elQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~~ 61 (61)
T PF08826_consen 1 ELQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRSR 61 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Done!