Query 000821
Match_columns 1267
No_of_seqs 290 out of 1293
Neff 5.3
Searched_HMMs 46136
Date Tue Apr 2 00:04:25 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000821.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000821hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02784 alpha-amylase 100.0 6.6E-51 1.4E-55 496.5 25.1 295 12-379 79-397 (894)
2 PRK06464 phosphoenolpyruvate s 100.0 6.9E-49 1.5E-53 490.7 29.7 289 949-1266 3-333 (795)
3 PRK06241 phosphoenolpyruvate s 100.0 5E-48 1.1E-52 489.2 29.1 278 950-1266 2-311 (871)
4 TIGR01418 PEP_synth phosphoeno 100.0 1.3E-47 2.8E-52 479.6 28.7 287 952-1266 1-331 (782)
5 PF01326 PPDK_N: Pyruvate phos 100.0 9.3E-49 2E-53 448.2 1.6 269 962-1267 4-303 (327)
6 PRK05878 pyruvate phosphate di 100.0 1.7E-38 3.6E-43 380.5 19.8 246 948-1266 4-297 (530)
7 COG0574 PpsA Phosphoenolpyruva 100.0 2.1E-36 4.5E-41 377.8 17.7 278 952-1266 4-320 (740)
8 TIGR01828 pyru_phos_dikin pyru 100.0 2.4E-34 5.2E-39 361.0 19.8 242 951-1266 2-337 (856)
9 PRK09279 pyruvate phosphate di 100.0 3.3E-31 7.1E-36 331.8 22.4 243 950-1266 3-343 (879)
10 PRK05849 hypothetical protein; 99.9 1.8E-25 3.8E-30 277.9 19.3 193 961-1267 5-216 (783)
11 PLN02784 alpha-amylase 99.9 3.8E-25 8.3E-30 271.7 14.0 130 246-376 68-210 (894)
12 PLN02316 synthase/transferase 97.2 0.013 2.9E-07 77.0 19.2 90 23-126 143-239 (1036)
13 PRK05849 hypothetical protein; 96.6 0.021 4.6E-07 73.5 13.9 176 736-918 571-781 (783)
14 PRK08296 hypothetical protein; 95.9 0.012 2.6E-07 73.7 6.3 97 816-919 503-601 (603)
15 PLN02316 synthase/transferase 95.8 0.27 5.9E-06 65.2 18.6 88 31-126 326-420 (1036)
16 PF00391 PEP-utilizers: PEP-ut 95.6 0.012 2.5E-07 55.2 3.9 68 842-913 9-78 (80)
17 PRK06241 phosphoenolpyruvate s 95.4 0.025 5.5E-07 74.2 6.9 93 818-919 773-868 (871)
18 PF03423 CBM_25: Carbohydrate 95.1 0.12 2.5E-06 49.5 8.8 65 288-373 20-86 (87)
19 PRK05865 hypothetical protein; 93.5 0.14 3.1E-06 66.8 7.5 98 816-921 739-838 (854)
20 PRK06354 pyruvate kinase; Prov 93.3 0.1 2.2E-06 65.7 5.4 95 816-917 486-582 (590)
21 TIGR01418 PEP_synth phosphoeno 93.2 0.13 2.9E-06 66.8 6.6 94 814-914 356-451 (782)
22 PRK11377 dihydroxyacetone kina 92.7 0.16 3.5E-06 62.4 5.9 68 842-919 395-471 (473)
23 PRK05878 pyruvate phosphate di 92.7 0.16 3.5E-06 63.1 6.0 99 812-917 350-451 (530)
24 PRK06464 phosphoenolpyruvate s 92.7 0.13 2.8E-06 67.0 5.3 99 814-920 358-462 (795)
25 PRK09279 pyruvate phosphate di 91.9 0.15 3.2E-06 66.8 4.5 105 814-921 396-511 (879)
26 PF03423 CBM_25: Carbohydrate 91.9 0.44 9.6E-06 45.6 6.5 67 46-124 18-86 (87)
27 TIGR01828 pyru_phos_dikin pyru 90.6 0.27 5.9E-06 64.4 5.0 105 814-921 390-505 (856)
28 PRK11177 phosphoenolpyruvate-p 89.1 0.51 1.1E-05 59.5 5.5 78 842-923 153-233 (575)
29 TIGR01417 PTS_I_fam phosphoeno 88.3 0.67 1.4E-05 58.4 5.8 76 842-922 152-231 (565)
30 COG1080 PtsA Phosphoenolpyruva 86.6 0.99 2.1E-05 56.2 5.7 72 842-923 154-234 (574)
31 PRK11061 fused phosphoenolpyru 86.2 0.86 1.9E-05 59.3 5.3 76 842-923 320-399 (748)
32 COG3848 Phosphohistidine swive 85.9 0.95 2.1E-05 44.7 4.1 99 815-920 5-105 (111)
33 PRK03955 hypothetical protein; 80.2 7.7 0.00017 40.2 8.2 96 816-919 6-128 (131)
34 PF11154 DUF2934: Protein of u 68.1 6.5 0.00014 32.6 3.4 35 138-175 5-39 (40)
35 COG0574 PpsA Phosphoenolpyruva 62.7 3.6 7.9E-05 53.6 1.5 109 776-893 305-415 (740)
36 COG3605 PtsP Signal transducti 62.2 5.1 0.00011 50.1 2.5 79 838-921 323-405 (756)
37 PF02786 CPSase_L_D2: Carbamoy 39.9 49 0.0011 36.8 5.5 45 1217-1266 131-179 (211)
38 PF04190 DUF410: Protein of un 34.4 1.3E+02 0.0029 34.4 8.1 87 466-556 53-158 (260)
39 COG5424 Pyrroloquinoline quino 29.9 67 0.0014 36.5 4.4 25 554-579 92-117 (242)
40 KOG3021 Predicted kinase [Gene 26.4 51 0.0011 37.4 2.8 43 461-505 95-137 (313)
41 PF07067 DUF1340: Protein of u 20.6 2.3E+02 0.005 31.3 6.1 61 670-747 148-208 (236)
No 1
>PLN02784 alpha-amylase
Probab=100.00 E-value=6.6e-51 Score=496.50 Aligned_cols=295 Identities=24% Similarity=0.466 Sum_probs=238.6
Q ss_pred ceeeeeecce----eEEEeecCCCCCceEEEEEEEeecCCceEEEeeeeecCC--CccccCCC--CC------CCccccc
Q 000821 12 VHNFELVEGM----KLQINASGSSIGRNVRVQFQLRNCARTWILHWGFLYRGN--TNWFIPAE--HP------KQGALQT 77 (1267)
Q Consensus 12 ~~~~~~~~~~----~~~~~~~~~~~g~~~~v~~~~~~~~~~l~lHWGv~~~~~--~~W~~P~~--~P------k~~a~~T 77 (1267)
...|.|.... ++-|-|. ..++.+.+|.+.+. .+++|+|||||++.++ +||.+||+ +| |++||||
T Consensus 79 kk~F~v~~~e~ve~~~~v~l~-~~~~g~~kv~v~t~-~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~~~~~~A~eT 156 (894)
T PLN02784 79 KETFPVKRTEKVEGKIYVRLE-EKNEKNWKLSVGCS-IPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSIAIKDYAIET 156 (894)
T ss_pred eeeeeecccceecceeEEEEE-ccCCCcEEEEEEec-CCCCeEEEEeEecCCCCCccccCCCcccCCCCcEEecCeEEec
Confidence 3467765554 2334443 67788999999866 7788999999999885 89999999 44 8999999
Q ss_pred ccccc--cc-cEEEEEEec-CCcceeEEEEEEeccccccccccCCcccccCCCCCCCCCCCCCchhhHh-hhhhhhhhcc
Q 000821 78 PFVKS--GE-IYLVTIELR-DPKIHAIEFILKDGIHDRWLRLNHGNFRIEIPEIDTNTCLQPIPKDLIE-LRAYQNWERR 152 (1267)
Q Consensus 78 pf~~~--g~-~~~~~i~~~-d~~~~ai~Fvl~d~~~~~W~k~~g~nf~v~l~~~~~~~~~~~vpe~lv~-~~a~~~We~~ 152 (1267)
||+++ |+ .+.|+|||+ ++++.||+||||+|++|+|||++|+||+|+||+......+ +++ -+.+..|..
T Consensus 157 ~f~~~s~~~~~~~v~iel~l~~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~~~~~~~------~~~~~~~~~~~~~- 229 (894)
T PLN02784 157 PLKKSSEGDSFYEVTIDLDPNSSIAAINFVLKDEETGAWYQHKGRDFKVPLVDDLPDGGN------NVGAKKGFGIWPG- 229 (894)
T ss_pred cccccccCCcceeEEEEEeeCCceeeEEEEEEeCCCCchhhcCCccEEEecccccccccc------eeehhhhcCcCcC-
Confidence 99996 44 788889999 9999999999999999999999999999999997666655 334 567788888
Q ss_pred CCCCCChhhhhHHHHHHHHHHHHHhhcCCChHHhhhhcccCCCCCCCCCccccccCCCCCCccccchhHhhhhccC--CC
Q 000821 153 GRPNNSPQQQQKDYNDALKELQLQLSNGISLKDLQSSHMTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYK--GH 230 (1267)
Q Consensus 153 gkp~~~~~~~~~~~~~a~~~l~~~l~~G~sl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~k~~~--~~ 230 (1267)
.|.++...+.++ +.++++.+++. .++..+ ....++ |++||+ |+
T Consensus 230 -----------------------------~l~~~~~~~~~~-~~~~~~~~~~~--~~~~~~--~~~~~~-~~~~~~~~~~ 274 (894)
T PLN02784 230 -----------------------------ALGQLSNILLKD-EGSPSKEQDKS--SSELDS--AAERKG-LKGFYEEMPI 274 (894)
T ss_pred -----------------------------ccccccchhccC-CCCCcccCCCc--cccccc--cccccc-chhhhhccce
Confidence 666666655555 23333333322 111111 122333 788898 77
Q ss_pred CcCCCCCchhHHHHHhhhcCCCcceeeeeeecceEEEEEEEee--CCceEEEEEecCCCCeEEEeeeecCCCCcccCCCC
Q 000821 231 VKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKII--SSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPP 308 (1267)
Q Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~v~~~k~f~~~~ei~V~v~~~--~g~~~V~v~td~~~~lvLHWGv~~~~~~eW~~PP~ 308 (1267)
.|+ +.++ +.|.|+|+++ ++|++|+|+||+|++|||||||||++++||++||+
T Consensus 275 ~k~--~~~~------------------------~~~~v~v~~~~~~~k~~v~v~td~~~~vvlHWgV~k~~~~eW~~Pp~ 328 (894)
T PLN02784 275 VKR--VAVD------------------------NSVTVTVRKCPETAKNLVYLETDLPGDVVVHWGVCKDGAKTWEIPPE 328 (894)
T ss_pred eeE--EEec------------------------ceEEEEEecCCCCCceEEEEEcCCCCCEEEEeEeccCCCCcccCCCC
Confidence 776 4455 8899999984 78999999999999999999999999999999999
Q ss_pred CCCCCccccccceeeeeeecccCCCcceeEEEEEecCCceeEEEEEEec-CCcccccCCcceEEecCCCCCc
Q 000821 309 DMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWS-GGSWIKNNGENFFVGLHPMDPK 379 (1267)
Q Consensus 309 ~~~P~~S~~~~~A~eT~f~~~~~~~~~~~~lei~l~~~~~~gi~FVLk~-~~~W~k~~G~DF~V~l~~~~~~ 379 (1267)
+++|+||++++|||||||++.+++.++++.++| ++.|.||+||||+ +|+||||+|+||||||+..++.
T Consensus 329 ~~~P~~sv~~~kA~eT~~~~~~~~~~~~~~~~l---d~~~~g~~FVLk~~~g~W~~~~G~DF~Ipl~~~~~~ 397 (894)
T PLN02784 329 PHPPETSLFKNKALQTMLQQKDDGNGSSGLFSL---DGELEGLLFVLKLNEGTWLRCNGNDFYVPLLTSSSL 397 (894)
T ss_pred CCCCCcceecccccccccccccCCCcceEEEec---CCCeeEEEEEEECCCCchhhcCCccEEEeCCchhcc
Confidence 999999999999999999999988889998777 7899999999999 6999999999999999987644
No 2
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=6.9e-49 Score=490.71 Aligned_cols=289 Identities=24% Similarity=0.387 Sum_probs=243.6
Q ss_pred CCceeEeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 000821 949 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS 1024 (1267)
Q Consensus 949 ~~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~ 1024 (1267)
+++++++++++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+...++.+++.
T Consensus 3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~ 79 (795)
T PRK06464 3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD 79 (795)
T ss_pred CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence 456889988875 4789999999999998655 59999999999999999999988 7888888877777777766
Q ss_pred HH----HHHHHHHHcCCCCHHHHHHHHHHH--------------HhcC-------CCCCCCc-------cHHHHHHHHHH
Q 000821 1025 KL----QEIQEAVLQMSAPLSLIYELKNKM--------------RSSG-------MPWPGDE-------GWNLAWRSIKK 1072 (1267)
Q Consensus 1025 ~L----~~IR~~I~~~~lP~eL~~eL~~A~--------------RSSg-------~sfAG~~-------g~e~l~~AIK~ 1072 (1267)
++ ++||++|++.++|+++.++|..++ |||+ .||||+| +.+++++|||+
T Consensus 80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~ 159 (795)
T PRK06464 80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE 159 (795)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence 54 899999999999999999998775 3553 4789988 37999999999
Q ss_pred HHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceE
Q 000821 1073 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF 1150 (1267)
Q Consensus 1073 VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f 1150 (1267)
||||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+|+.+.++|+++|||||+||+|.+ +||+|
T Consensus 160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~ 238 (795)
T PRK06464 160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF 238 (795)
T ss_pred HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999987 89999
Q ss_pred EEecCCCC--CCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHH
Q 000821 1151 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 1228 (1267)
Q Consensus 1151 ~v~K~~~~--~~~vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~ 1228 (1267)
+++|.+.. .+.+ .++.++.| ...+++... | +.| ...+++++.. +..|+|+|++
T Consensus 239 ~v~~~~~~~~~~~i---~~~~i~~K-~~~~~~~~~--~-------~~~-~~~~~~~~~~------~~~~~L~~~~----- 293 (795)
T PRK06464 239 YVHKPTLKAGKPAI---VRRTLGSK-KIKMVYDDG--G-------EHG-VKTVDVPEEE------RNRFSLTDEE----- 293 (795)
T ss_pred EEecccccccccce---eeeecccc-ceeeeeccC--C-------CCc-eeEEeCCHHH------hhccCCCHHH-----
Confidence 99987532 1112 35666665 223333211 1 123 3456665432 4689999998
Q ss_pred HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 000821 1229 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 1266 (1267)
Q Consensus 1229 l~rLa~la~~IE~~fG~PQDIEwai~~--g~LyILQaRPq 1266 (1267)
+++|++++.+||++||+|||||||+++ |+|||||+||+
T Consensus 294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi 333 (795)
T PRK06464 294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE 333 (795)
T ss_pred HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence 899999999999999999999999987 99999999997
No 3
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=100.00 E-value=5e-48 Score=489.15 Aligned_cols=278 Identities=24% Similarity=0.430 Sum_probs=232.4
Q ss_pred CceeEeCCCCC---CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH
Q 000821 950 GKYAVSVEDFT---PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL 1026 (1267)
Q Consensus 950 ~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L 1026 (1267)
.++++++.++. ...|||||+||++|.+ .|++||+|||||+++|++||+.+ ++.+.|....+.++..+...+
T Consensus 2 ~~~v~~l~~~~~~~~~~vGgKa~~L~~L~~---~G~~VP~gfvi~~~~~~~~l~~~---~~~~~i~~~l~~~~~~~~~~~ 75 (871)
T PRK06241 2 SSYVLDFQEIDKTQLPLVGGKGANLGELSR---AGIPVPEGFCVTTEAYKKFLEQN---EEFDALLDQLSALKLEDREQI 75 (871)
T ss_pred CceEEEhhhcCcccccccChHHHHHHHHHH---CCCCCCCeEEecHHHHHHHHHhC---CcHHHHHHHHhcCCCCCHHHH
Confidence 46788888764 4689999999999999 79999999999999999999987 444444444444554554433
Q ss_pred ----HHHHHHHHcCCCCHHHHHHHHHHH-----------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcC
Q 000821 1027 ----QEIQEAVLQMSAPLSLIYELKNKM-----------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASK 1077 (1267)
Q Consensus 1027 ----~~IR~~I~~~~lP~eL~~eL~~A~-----------RSSg-------~sfAG~~-------g~e~l~~AIK~VWASl 1077 (1267)
++||++|++.++|+++.++|.+++ |||+ .||||++ +.+++++|||+||||+
T Consensus 76 ~~~~~~ir~~i~~~~~p~~l~~~l~~a~~~~~~~~~~aVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~~~~ai~~~waS~ 155 (871)
T PRK06241 76 GEISAKIREVIEAIEIPEDIVEAIAAALSKFGEDHAYAVRSSATAEDLPTASFAGQQDTYLNVIGKDAILQHIRKCWASL 155 (871)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCCeEEEeCCCCccCCCCCCCccccccccCCCCHHHHHHHHHHHHHhc
Confidence 799999999999999999999875 5664 4789988 4899999999999999
Q ss_pred CChHHHHHHHHcCCCCcccceEEEEEeeecCceeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEecCCC
Q 000821 1078 WNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNL 1157 (1267)
Q Consensus 1078 fn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f~v~K~~~ 1157 (1267)
||+||+.||+++|++++++.|||+||+||++++|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|++++ +
T Consensus 156 ~~~ra~~Yr~~~g~~~~~~~maV~vQ~mv~~~~sGV~ft~~P~~~~~~~~~I~a~~GlGe~vV~G~v-~pd~~~v~~--~ 232 (871)
T PRK06241 156 FTERAVIYRIQNGFDHRKVYMSVVVQKMVFPEASGIMFTADPVTGNRKVLSIDASFGLGEALVSGLV-SADTYKVRE--G 232 (871)
T ss_pred cCHHHHHHHHHcCCCchhcceEEEEEeccccccceEEEecCCCCCCCCEEEEEEecCCChhhhcCcc-CCeEEEEeC--C
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 899999982 2
Q ss_pred CCCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHH
Q 000821 1158 KSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGK 1237 (1267)
Q Consensus 1158 ~~~~vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rLa~la~ 1237 (1267)
.+ .++.++.| .. .++... ++|+ ..+++++. .++.|+|++++ +.+|+++|.
T Consensus 233 ---~i---~~~~i~~k-~~-~~~~~~----------~gg~-~~~~~~~~------~~~~~~L~~~~-----~~~L~~l~~ 282 (871)
T PRK06241 233 ---KI---IDKTIATK-KL-AIYALK----------EGGT-ETKEIEPE------QQKSQTLTDEQ-----ILELARLGR 282 (871)
T ss_pred ---ce---EEEecccc-ce-EEEecC----------CCce-EEEECCHH------HhcCCCCCHHH-----HHHHHHHHH
Confidence 23 35666665 22 222221 2343 34555432 24579999998 899999999
Q ss_pred HHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000821 1238 IIESLYGYPQDIEGVLKDGLIYVVQARPQ 1266 (1267)
Q Consensus 1238 ~IE~~fG~PQDIEwai~~g~LyILQaRPq 1266 (1267)
+||++||+|||||||+.+|+|||||+||+
T Consensus 283 ~ie~~~g~pqDIEw~~~~~~l~ilQaRPi 311 (871)
T PRK06241 283 KIEAHFGCPQDIEWCLADGTFYILQSRPI 311 (871)
T ss_pred HHHHHcCCCcceEEEEECCEEEEEEcCCc
Confidence 99999999999999999999999999997
No 4
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=100.00 E-value=1.3e-47 Score=479.57 Aligned_cols=287 Identities=27% Similarity=0.418 Sum_probs=237.9
Q ss_pred eeEeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH-
Q 000821 952 YAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL- 1026 (1267)
Q Consensus 952 ~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L- 1026 (1267)
+++||+++. ...|||||+||++|++.++ .|++||+|||||+++|++||+.+ ++.+.|..+.+.++.++++.+
T Consensus 1 ~~~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~~VP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~~~~~l~ 77 (782)
T TIGR01418 1 LILWLEEVRKDDVPLVGGKNASLGEMIQNLSPAGVPVPPGFVVTAEAYRYFLEEN---GIAQKIRDLLEELDVEDSEALA 77 (782)
T ss_pred CeeehhhcCcccccccChHHHHHHHHHhhhhhcCCCCCCeEEEcHHHHHHHHHhC---ChHHHHHHHHHhcCcCCHHHHH
Confidence 467777764 4689999999999997322 58999999999999999999988 788888777776776676544
Q ss_pred ---HHHHHHHHcCCCCHHHHHHHHHHH----------------HhcC-------CCCCCCc-------cHHHHHHHHHHH
Q 000821 1027 ---QEIQEAVLQMSAPLSLIYELKNKM----------------RSSG-------MPWPGDE-------GWNLAWRSIKKV 1073 (1267)
Q Consensus 1027 ---~~IR~~I~~~~lP~eL~~eL~~A~----------------RSSg-------~sfAG~~-------g~e~l~~AIK~V 1073 (1267)
++||++|++.++|+++.++|..++ |||+ .||||+| +.+++.+|||+|
T Consensus 78 ~~~~~ir~~i~~~~lP~~l~~~l~~a~~~l~~~~g~~~~~vaVRSSa~~ED~~~~SfAGq~~s~l~v~~~~~l~~aik~v 157 (782)
T TIGR01418 78 AASAEIRELILNTPFPPDLEEAIREAYDKLSEDYGKEEADVAVRSSATAEDLPDASFAGQQETYLNVTGEEEVLEHVKKC 157 (782)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhhcCCcCceEEEECCCCCCCCCCCCcccceeeeecCCCHHHHHHHHHHH
Confidence 799999999999999999988764 4553 4789987 489999999999
Q ss_pred HhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEE
Q 000821 1074 WASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFV 1151 (1267)
Q Consensus 1074 WASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f~ 1151 (1267)
|||+||+||+.||+++|++++++.|||+||+||+++ +|||+||+||.+++++.++|+++|||||+||+|.+ +||+|.
T Consensus 158 ~aS~~~~rA~~Yr~~~g~~~~~~~maVlVQ~mv~~~~~~SGV~fT~~P~~g~~~~~~I~a~~GlGe~vV~G~v-~pD~~~ 236 (782)
T TIGR01418 158 WASLFTDRAISYRVSQGFDHEKVAIAVGVQKMVRSDLGSSGVMFTIDTETGFKDAVFIESAWGLGEAVVGGAV-TPDEYV 236 (782)
T ss_pred HHccCCHHHHHHHHHcCCChhhhCeeEEEEEcccCCCCceeEEEecCCCCCCCCeEEEEEccCCCcccccCCc-CCeEEE
Confidence 999999999999999999999999999999999999 99999999999999999999999999999999987 999999
Q ss_pred EecCCCCC--CcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHH
Q 000821 1152 TKKNNLKS--PIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVF 1229 (1267)
Q Consensus 1152 v~K~~~~~--~~vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l 1229 (1267)
++|.+... ..+ .++.++.| ...+++..+ | +.++....++++.. +.+|+|+|++ +
T Consensus 237 v~r~~~~~~~~~i---~~~~~~~k-~~~~~~~~~--g-------~~~~~~~~~~~~~~------~~~~~L~~~~-----l 292 (782)
T TIGR01418 237 VFKPTLEQGKKAI---LERTLGSK-KIKMVYDPD--G-------GNVETKIVEVPEEE------RDAFSLSDEE-----I 292 (782)
T ss_pred Eecccccccccce---eeeecccc-ceEEEEccC--C-------CCcceEEEeCCHHH------hhccCCCHHH-----H
Confidence 99876320 012 35566665 223333211 1 11223455555432 4679999998 8
Q ss_pred HHHHHHHHHHHHhcCCCeeEEEEEE--CCeEEEEeeccC
Q 000821 1230 SKIAETGKIIESLYGYPQDIEGVLK--DGLIYVVQARPQ 1266 (1267)
Q Consensus 1230 ~rLa~la~~IE~~fG~PQDIEwai~--~g~LyILQaRPq 1266 (1267)
++|++++.+||++||+|||||||++ +|+|||||+||+
T Consensus 293 ~~La~l~~~lE~~fg~pqDIEWa~~~~~g~l~iLQaRPi 331 (782)
T TIGR01418 293 LELAKLAVLIEKHYGRPMDIEWAKDGFDGEIFIVQARPE 331 (782)
T ss_pred HHHHHHHHHHHHHhCCCceeEEEEECCCCeEEEEEeecc
Confidence 9999999999999999999999999 899999999997
No 5
>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []. Residues at the N terminus correspond to the transit peptide which is indispensable for the transport of the precursor protein into chloroplasts in plants []. This domain is present at the N terminus of some PEP-utilizing enzymes.; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 2DIK_A 2R82_A 1JDE_A 1DIK_A 1GGO_A 1KBL_A 1KC7_A 2X0S_A 2OLS_A 1VBH_A ....
Probab=100.00 E-value=9.3e-49 Score=448.20 Aligned_cols=269 Identities=30% Similarity=0.512 Sum_probs=197.5
Q ss_pred CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCCh----HHHHHHHHHHHcCC
Q 000821 962 DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDL----SKLQEIQEAVLQMS 1037 (1267)
Q Consensus 962 ~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~----~~L~~IR~~I~~~~ 1037 (1267)
..|||||+||++|++ .+++||+|||||+++|++||+++ ++.+.+..+...+...+. +.+++||++|++.+
T Consensus 4 ~~vGgKa~~L~~L~~---~g~~VP~gfvIt~~~~~~~l~~~---~l~~~i~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 77 (327)
T PF01326_consen 4 SLVGGKAANLAELRR---AGVPVPPGFVITTDAFQEFLESN---GLREEIEQLLEPLDLSDREDLQAISKEIRELILSAP 77 (327)
T ss_dssp HHHHHHHHHHHHHHH---TT-S---EEEE-HHHHHHHHTTC---CHHHHHHHHHHBE-EEEEEECSSHHTTCCHEEEEET
T ss_pred HHCCHHHHHHHHHHH---CCCCCCcEEEecHHHHHHHHHcC---ChHHHHHHHHhhhccccHHHHHHHHHHHHHHHHhCC
Confidence 458999999999997 69999999999999999999887 788888887664433222 24589999999999
Q ss_pred CCHHHHHHHHHHH------------HhcC-------CCCCCCc-------cHHHHHHHHHHHHhcCCChHHHHHHHHcCC
Q 000821 1038 APLSLIYELKNKM------------RSSG-------MPWPGDE-------GWNLAWRSIKKVWASKWNERAFISCRKANL 1091 (1267)
Q Consensus 1038 lP~eL~~eL~~A~------------RSSg-------~sfAG~~-------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi 1091 (1267)
+|+++.++|..++ |||+ .+|||+| +.++|++|||+||||+|++||+.||+++|+
T Consensus 78 lp~~~~~~l~~~~~~~~~~~~~~aVRSSa~~ED~~~~sfAG~~~s~l~v~~~~~l~~Aik~v~aS~f~~ra~~yr~~~g~ 157 (327)
T PF01326_consen 78 LPEELVEELEAALEELGQRDQPLAVRSSATSEDGAEASFAGQYDSVLNVPGEEELLEAIKQVWASLFSPRALAYRRRRGI 157 (327)
T ss_dssp --HHHHHHHHHHHTHHHHHHHHCCCEECE-HHHHH-HHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTSHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHhcccccccceEEEeccccccccchHHHHHHHHHHhCCChHHHHHHHHHHHHhCcCCHHHHHHHHhcCC
Confidence 9999999999875 4443 3678877 369999999999999999999999999999
Q ss_pred CCcccceEEEEEeeecCceeEEEEecCCCCCCCcc-eeeecccccccccccccCCCCceEEEecCCCCCCcccccccccc
Q 000821 1092 NHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSE-IYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLI 1170 (1267)
Q Consensus 1092 ~~~~v~MAVLVQemV~ad~SGVlfT~nP~tgd~~e-i~Ieav~GLGE~LVsG~~G~pd~f~v~K~~~~~~~vl~~~sk~i 1170 (1267)
+++++.|||+||+||++++|||+||+||.+|+.++ ++|++++||||+||+|.+ +|++|++++.++ .+ ..+.+
T Consensus 158 ~~~~~~maVlVQ~mv~~~~sGV~fT~~p~~g~~~~~~~i~~~~Glge~vV~G~~-~~d~~~v~~~~~---~~---~~~~~ 230 (327)
T PF01326_consen 158 PDEDVGMAVLVQPMVDAEASGVAFTRNPITGEPNEDIVIEAVWGLGESVVSGEV-TPDSFIVSRSDP---RI---REREI 230 (327)
T ss_dssp TTS---EEEEEEE---TTEEEEEESS-TTT--SSEEEEEEEESS-CHHHHHTSS---EECCC--EHH---HH---HEEE-
T ss_pred ChhHhCceeEEEEEecCcceeEEEeeCCCCCCCCcceEEEEccCCCcccccCCC-CCcEEEEEcCCc---ch---hhhhc
Confidence 99999999999999999999999999999999998 999999999999999998 999999987553 22 13344
Q ss_pred cccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEE
Q 000821 1171 GLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIE 1250 (1267)
Q Consensus 1171 g~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rLa~la~~IE~~fG~PQDIE 1250 (1267)
+.+ +..++. . .++|+ ..++++. ++...++|++++ +++|++++.+||++||+|||||
T Consensus 231 ~~k-~~~~~~--~---------~~~~~-~~~~~~~------~~~~~~~l~~~~-----~~~L~~l~~~le~~~g~p~DIE 286 (327)
T PF01326_consen 231 GQK-SVQLVP--D---------EGGGL-EEVDVPE------ERQDSPSLSDEQ-----LQQLAELARKLEEHFGRPQDIE 286 (327)
T ss_dssp ----HCCCCC--C---------CTTTE-ECCCHHH------HCHCHHHHSHHH-----HHHHHHHHHHHHHHHTS-EEEE
T ss_pred CCc-eEEEEE--c---------CCCce-EEEeCch------hhhhhhhcCHHH-----HHHHHHHHHHHHHHcCCCeEEE
Confidence 443 111211 1 23453 3343332 235678888887 8999999999999999999999
Q ss_pred EEEECCeEEEEeeccCC
Q 000821 1251 GVLKDGLIYVVQARPQM 1267 (1267)
Q Consensus 1251 wai~~g~LyILQaRPqv 1267 (1267)
||+++|+|||||+||+.
T Consensus 287 w~~~~~~l~iLQaRPi~ 303 (327)
T PF01326_consen 287 WAIDGGQLYILQARPIT 303 (327)
T ss_dssp EEEETTEEEEEEEEE--
T ss_pred EEEECCEEEEEEecccc
Confidence 99999999999999984
No 6
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=100.00 E-value=1.7e-38 Score=380.48 Aligned_cols=246 Identities=18% Similarity=0.280 Sum_probs=196.2
Q ss_pred cCCceeEeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhCC--
Q 000821 948 FRGKYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFING-- 1020 (1267)
Q Consensus 948 ~~~~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~I~~l~a~l~~-- 1020 (1267)
+..++++++++... +++|||++||++|++ .++|||+|||||+.+|++|++.+. .+.|++.|....+.++.
T Consensus 4 ~~~~~v~~l~~~~~~~~~~lGgK~a~L~em~~---~glpVP~GFvITt~a~~~f~~~~~~~~~~l~~ei~~~l~~le~~~ 80 (530)
T PRK05878 4 TLENAVVLLDGGANQPRELLGGKGHGIDMMRR---LGLPVPPAFCITTEVCVRYLADPGSTIDAIWDDVLDRMRWLEAET 80 (530)
T ss_pred ccCceEEECCCCChhhhhccCHHHHhHHHHHH---CCCCCCCcEEEeHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 45678999998754 689999999999998 689999999999999999998862 23466666554433211
Q ss_pred ----C---ChH----------HHHHHHHHHHcCCCCHHHHHHHHHHHHh------cCCCCCCCc-------------cHH
Q 000821 1021 ----G---DLS----------KLQEIQEAVLQMSAPLSLIYELKNKMRS------SGMPWPGDE-------------GWN 1064 (1267)
Q Consensus 1021 ----~---d~~----------~L~~IR~~I~~~~lP~eL~~eL~~A~RS------Sg~sfAG~~-------------g~e 1064 (1267)
+ ++. .+.-+++.|+++.+|++++++|.+..-. +..+|+|+| .++
T Consensus 81 g~~fg~~~~plllsvrS~a~~S~pGm~dtiLn~gl~d~~~~~l~~~~g~~~~a~D~~~rF~~~y~~vv~~~~~~p~dp~~ 160 (530)
T PRK05878 81 GRTFGRGPRPLLVSVRSGAAQSMPGMMDTILNLGINDAVEQALAAEGGDPDFAADTRRRFTEMYRRIVGSGSPPPDDPYE 160 (530)
T ss_pred hhccCCCCCCceEEEccCCCCCCccHhhhhhhcCCCHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHhccCCCCCCChHH
Confidence 1 221 1234999999999999999999764211 112455555 158
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc-----eeEEEEecCCCCCCCcceeeeccccccccc
Q 000821 1065 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETL 1139 (1267)
Q Consensus 1065 ~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~Ieav~GLGE~L 1139 (1267)
++.+|||.||||+||+||+.||+++|++++. .|||+||+||.++ .|||+||+||.+|+...+.+.+++|+||.|
T Consensus 161 qL~~Aik~V~aS~~s~rA~~YR~~~gi~~~~-~mAV~VQ~MV~g~~~~~s~sGV~FT~dP~tg~~~~~~~~~~~GlGe~v 239 (530)
T PRK05878 161 QLRAAIEAVFASWNSPRAVAYRRHHGLDDDG-GTAVVVQAMVFGNLDANSGTGVLFSRNPITGANEPFGEWLPGGQGEDV 239 (530)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCccc-CcEEEEEeCccCCCCCCcceEEEEeCCCCCCCCcEEEEEcCCCCCHHH
Confidence 9999999999999999999999999998754 8999999999664 579999999999998888888999999999
Q ss_pred ccccCCCCceEEEecCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCC
Q 000821 1140 VGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMV 1219 (1267)
Q Consensus 1140 VsG~~G~pd~f~v~K~~~~~~~vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plL 1219 (1267)
|+|.+ +|+.|.+.+. ..|
T Consensus 240 VsG~~-~p~~~~~~~~-----------------------------------------------------------~~p-- 257 (530)
T PRK05878 240 VSGLV-DVAPITALRD-----------------------------------------------------------EQP-- 257 (530)
T ss_pred hcCCc-CCcchhhhcc-----------------------------------------------------------cCH--
Confidence 99976 5654332110 001
Q ss_pred CccccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000821 1220 GDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1266 (1267)
Q Consensus 1220 tD~~~r~~~l~rLa~la~~IE~~fG~PQDIEwai~~g~LyILQaRPq 1266 (1267)
..+.+|++++..||++||.||||||+|++|+|||||+||.
T Consensus 258 -------~~~~eL~~~a~~LE~~fg~pqDIEfai~~g~L~iLQaRp~ 297 (530)
T PRK05878 258 -------AVYDELMAAARTLERLGRDVQDIEFTVESGKLWLLQTRSA 297 (530)
T ss_pred -------HHHHHHHHHHHHHHHHcCCceeEEEEEECCEEEEEEeecc
Confidence 1267999999999999999999999999999999999995
No 7
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.1e-36 Score=377.81 Aligned_cols=278 Identities=24% Similarity=0.398 Sum_probs=223.8
Q ss_pred eeEeCCCC---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHH--
Q 000821 952 YAVSVEDF---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKL-- 1026 (1267)
Q Consensus 952 ~vl~l~e~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L-- 1026 (1267)
++.++.+. +..++|||++||++|.+ .|++||+||||++.+|+.|++.+ ++.+.+...+..++..+...+
T Consensus 4 ~~~~~~e~~~~~~~lvGgKga~L~Em~~---~Gl~VP~GF~itt~a~~~f~~~~---~~~~~~~~~l~~~~~~~~~~l~~ 77 (740)
T COG0574 4 LILWLDEVKLEDVGLVGGKGASLGEMLK---MGLPVPPGFAITSEAYRYFLKEN---GLADKILKILSALDLNDNVELEF 77 (740)
T ss_pred cccchhhcCcchhhhcCCccCCHHHHHh---CCCCCCCeEEEeHHHHHHHHhcc---chHHHHHHHhcCCCcchhHHHHH
Confidence 45555554 35899999999999999 69999999999999999999987 677777766665554444343
Q ss_pred --HHHHHHHHcCCCCHHHHHHHHHHHHh---------------cC-------CCCCCCc-------cHHHHHHHHHHHHh
Q 000821 1027 --QEIQEAVLQMSAPLSLIYELKNKMRS---------------SG-------MPWPGDE-------GWNLAWRSIKKVWA 1075 (1267)
Q Consensus 1027 --~~IR~~I~~~~lP~eL~~eL~~A~RS---------------Sg-------~sfAG~~-------g~e~l~~AIK~VWA 1075 (1267)
..++..|+..++|+++.+++..++.. |+ .+|+|+. +.++++.+|++|||
T Consensus 78 ~~~~~~~~i~~~~~p~~l~~ei~~al~~~~~~~~~~~~~avrss~taedL~~~sFagq~~t~lni~~~e~l~~~i~~~~a 157 (740)
T COG0574 78 RSELIRPLIMPTPLPEDLSAEIAEALEELTGYGDSDADVAVRSSATAEDLPGASFAGQQETYLNVDGIEDLLEAIKKCWA 157 (740)
T ss_pred HHHHHHhhhccCCCChHHHHHHHHHHHHhccccccceeEEEeeccccccCCcccccccccccCCcCCHHHHHHHHHHHHH
Confidence 68999999999999999999988733 32 2688855 59999999999999
Q ss_pred cCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEe
Q 000821 1076 SKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTK 1153 (1267)
Q Consensus 1076 Slfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f~v~ 1153 (1267)
|+||+||+.||..+|+++..+.|||+||+||.++ .|||+||+||.||....+.+++.+||||.+|+|.+ +|+.|++.
T Consensus 158 Sl~~~RAi~Yr~~~~~~~~~~~laV~VQ~MV~~~~~~sGV~FT~~P~tg~~~~~~i~~~~glGE~vV~G~v-tpd~~~~~ 236 (740)
T COG0574 158 SLFVDRAIAYRYHNGIDHSELGLAVVVQKMVFSDLGESGVMFTIDPITGERDVVVIESSWGLGEDVVDGQV-TPDEYYVS 236 (740)
T ss_pred hhcchhHHHHHHHcCCcchhhceEEEEeeeeccCCCceeEEEecCCccCCcceEEEEccccCccceEEEEE-cCceEEEe
Confidence 9999999999999999999999999999999999 99999999999999999999999999999999999 99999999
Q ss_pred cCCCCCCcccccccccccccCCceEEeecCCCCcccccccCCCe-eeeeecCCccccccccCCCCCCCccccchHHHHHH
Q 000821 1154 KNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGL-YDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKI 1232 (1267)
Q Consensus 1154 K~~~~~~~vl~~~sk~ig~~~~~~~i~rsdsngedLe~~ag~Gl-~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rL 1232 (1267)
|.+. ..+.++.+ ...+++..+. +.+. .+..+++.. ...+++++|.. +.+|
T Consensus 237 k~~~--------~~~~~~~~-~~~~i~~~~~---------~e~~~~~~~ev~~~------~~~~~~l~~~~-----i~~l 287 (740)
T COG0574 237 KDTL--------VEKALPSK-LIKLIYDADK---------LEGHRARIEEIEDE------FTDAFSLSDEE-----IKRL 287 (740)
T ss_pred ccch--------hhhhhhHH-HHHHHHHhhc---------ccceeeeeccCChH------HhhhhhccHHH-----HHHH
Confidence 9653 01222221 1123322110 1111 112222211 23567788877 8999
Q ss_pred HHHHHHHHHhcCCCeeEEEEEECCeEEEEeeccC
Q 000821 1233 AETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1266 (1267)
Q Consensus 1233 a~la~~IE~~fG~PQDIEwai~~g~LyILQaRPq 1266 (1267)
++++..||.+|+.||||||++++ ++||+|+||.
T Consensus 288 a~~~~~ie~~~~~p~diEw~id~-~~~ilq~rP~ 320 (740)
T COG0574 288 AKLAIKIEKHYGRPMDIEWAIDG-KLYILQARPE 320 (740)
T ss_pred HHHHHHHHHhhCCchhhhhhhcC-ceEEEEecCc
Confidence 99999999999999999999998 8999999996
No 8
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=100.00 E-value=2.4e-34 Score=361.00 Aligned_cols=242 Identities=19% Similarity=0.279 Sum_probs=189.0
Q ss_pred ceeEeCCCCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHHHHhhhC------
Q 000821 951 KYAVSVEDFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISRLYKFIN------ 1019 (1267)
Q Consensus 951 ~~vl~l~e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~I~~l~a~l~------ 1019 (1267)
++++++++.+. .++|||++||++|.+ .|+|||+|||||+.+|+.|++.+. ..++++.|....+.++
T Consensus 2 ~~v~~~~~~~~~~~~~~GgK~a~L~em~~---~glpVPpGFviTt~a~~~~~~~~~~~~~~l~~~i~~~~~~le~~~g~~ 78 (856)
T TIGR01828 2 KRVYAFGEGNASMKNLLGGKGANLAEMTK---LGLPVPPGFTITTEACNEYYANGKQFPKGLQEEIKEALTLLEEKTGKK 78 (856)
T ss_pred CeEEECCCCCchhhhhcCHHHHhHHHHHh---CCCCCCCcEEEeHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHhCcc
Confidence 47888888754 689999999999998 599999999999999999999873 2346666655544443
Q ss_pred ---CCChH----------HHHHHHHHHHcCCCCHHHHHHHHH-------HH---H--------------hc---------
Q 000821 1020 ---GGDLS----------KLQEIQEAVLQMSAPLSLIYELKN-------KM---R--------------SS--------- 1053 (1267)
Q Consensus 1020 ---~~d~~----------~L~~IR~~I~~~~lP~eL~~eL~~-------A~---R--------------SS--------- 1053 (1267)
.+++. .+..++++|+++.+|++++++|.+ ++ | |+
T Consensus 79 fg~~~~PllvsvrS~a~~smpgm~~tiLn~glnd~~~~~l~~~~g~~~fa~d~yrRfi~~~g~vvl~v~~~~f~~~~~~~ 158 (856)
T TIGR01828 79 FGDTENPLLVSVRSGAAVSMPGMMDTILNLGLNDETVEGLAKLTGNARFAYDSYRRFIQMFGDVVLGIPHELFEQILEAM 158 (856)
T ss_pred cCCCCCcceEEeccCCCCCCccHHHHHHhCCCCHHHHHHHHHhhCChHHHHHHHHHHHhhhcccccCCCchhHHHHHHHH
Confidence 12221 124899999999999999999987 32 2 11
Q ss_pred ----C------CC----------CCCCc-----------cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEE
Q 000821 1054 ----G------MP----------WPGDE-----------GWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLI 1102 (1267)
Q Consensus 1054 ----g------~s----------fAG~~-----------g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLV 1102 (1267)
+ .+ |+|+| .++++..||+.||||+||+||+.||+.+|++++ ..|||+|
T Consensus 159 ~~~~~~~~d~~~s~~~~~~l~~~f~~~~~~~~g~~f~~~p~~qL~~Ai~~V~aS~~s~rA~~YR~~~gi~~~-~~~aV~V 237 (856)
T TIGR01828 159 KEEKGVKLDTDLTADDLKELIEKYKAIYREATGKPFPQDPKEQLELAIKAVFDSWNNPRAIVYRRLNDIPED-WGTAVNI 237 (856)
T ss_pred HHHcCCCCCCCCCHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHcCChHHHHHHHhcCCCcc-cCcEEEE
Confidence 1 11 33433 378999999999999999999999999999996 8999999
Q ss_pred EeeecCc-----eeEEEEecCCCCCCCcceeeecc-cccccccccccCCCCceEEEecCCCCCCcccccccccccccCCc
Q 000821 1103 QETICGD-----YAFVIHTKNPLSGDNSEIYTEIV-KGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKP 1176 (1267)
Q Consensus 1103 QemV~ad-----~SGVlfT~nP~tgd~~ei~Ieav-~GLGE~LVsG~~G~pd~f~v~K~~~~~~~vl~~~sk~ig~~~~~ 1176 (1267)
|+||.++ .|||+||+||.||... ++++.. .|+||.||+|.+ +|+.|...+
T Consensus 238 Q~MV~g~~~~~s~SGV~FTrdP~tg~~~-~~g~~~i~a~ge~vVsG~~-tp~~~~~~~---------------------- 293 (856)
T TIGR01828 238 QSMVFGNMGETSGTGVAFTRNPSTGEKG-LFGEFLINAQGEDVVAGIR-TPQPITAME---------------------- 293 (856)
T ss_pred EEeecCCCCCCceeEEEEeCCCCCCCCc-ceEEEEEcCCCchhccccc-CcHHHHHhh----------------------
Confidence 9999665 6999999999999764 444433 469999999875 554321100
Q ss_pred eEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEEEEEECC
Q 000821 1177 SIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDG 1256 (1267)
Q Consensus 1177 ~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rLa~la~~IE~~fG~PQDIEwai~~g 1256 (1267)
-+.++. +++|++++..||++||.|||||||+++|
T Consensus 294 -----------------------------------------~~~p~~-----~~~L~~~a~~lE~~fg~pqDIEfai~~g 327 (856)
T TIGR01828 294 -----------------------------------------ADMPDV-----YKELLDIAEKLEGHYRDMQDIEFTIERG 327 (856)
T ss_pred -----------------------------------------hcChHH-----HHHHHHHHHHHHHHcCCcccceEEEECC
Confidence 011122 7899999999999999999999999999
Q ss_pred eEEEEeeccC
Q 000821 1257 LIYVVQARPQ 1266 (1267)
Q Consensus 1257 ~LyILQaRPq 1266 (1267)
+|||||+||.
T Consensus 328 ~L~iLQ~RP~ 337 (856)
T TIGR01828 328 KLYMLQTRNG 337 (856)
T ss_pred EEEEEEeecC
Confidence 9999999994
No 9
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=99.97 E-value=3.3e-31 Score=331.78 Aligned_cols=243 Identities=23% Similarity=0.341 Sum_probs=181.1
Q ss_pred CceeEeCCC----C---CCCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc--chhHHHHHHH----HHh
Q 000821 950 GKYAVSVED----F---TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI--NKDIANKISR----LYK 1016 (1267)
Q Consensus 950 ~~~vl~l~e----~---~~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~--n~~L~~~I~~----l~a 1016 (1267)
.++++++++ . ..+++|||++||++|.+ .|+|||+||+||+++|++|++... ..++++.+.. |..
T Consensus 3 ~~~v~~f~~~~~~~~~~~~~llGgKga~L~em~~---~glpVPpgF~itt~ac~~~~~~~~~~~~~l~~~i~~~l~~lE~ 79 (879)
T PRK09279 3 KKYVYLFGGGKAEGNASMKDLLGGKGANLAEMTN---LGLPVPPGFTITTEACNEYYANGKKLPEGLKEEVKEALAKLEE 79 (879)
T ss_pred cceEEEeCCCCcccChhHHhhcCHHHHhHHHHHH---CCCCCCCcEEEcHHHHHHHHhcCccCcHHHHHHHHHHHHHHHH
Confidence 367787743 2 23799999999999998 699999999999999999998762 3445554433 333
Q ss_pred hhC--CCChH-------------HHHHHHHHHHcCCCCHHHHHHHHHH----------HHh----cC-------------
Q 000821 1017 FIN--GGDLS-------------KLQEIQEAVLQMSAPLSLIYELKNK----------MRS----SG------------- 1054 (1267)
Q Consensus 1017 ~l~--~~d~~-------------~L~~IR~~I~~~~lP~eL~~eL~~A----------~RS----Sg------------- 1054 (1267)
..+ .++.+ ...-+.+.|+++-+.++.+..|.+. ||. .|
T Consensus 80 ~~g~~fg~~~~PLLvSVRSga~~SmPGmmdTiLNlGlnd~~~~~la~~tg~~~fa~d~yrRfiq~~~~vv~gi~~~~fe~ 159 (879)
T PRK09279 80 LTGKKFGDPENPLLVSVRSGARVSMPGMMDTVLNLGLNDETVEGLAKKTGNERFAYDSYRRFIQMFGDVVLGIDHELFEE 159 (879)
T ss_pred HhCcccCCCCCceeEEEecCCCCCCCCcchhhhcCCCCHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 222 12211 1245677777777777777777642 111 11
Q ss_pred --------------------------------------CCCCCCccHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCccc
Q 000821 1055 --------------------------------------MPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNL 1096 (1267)
Q Consensus 1055 --------------------------------------~sfAG~~g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v 1096 (1267)
.+|| ++.+++|..||+.||+|+||+||+.||+.+|++++ .
T Consensus 160 ~~~~~k~~~~~~~~~~l~~~~l~~l~~~~k~~~~~~~g~~fp-~dp~~QL~~AI~aV~~S~~s~rA~~YR~~~gi~~~-~ 237 (879)
T PRK09279 160 ILEELKEKKGVKLDTDLTAEDLKELVERYKEIVKEETGKPFP-QDPYEQLWGAIGAVFRSWNNPRAITYRRLNNIPED-W 237 (879)
T ss_pred HHHHHHHHcCCCCccCCCHHHHHHHHHHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHHhhcChHHHHHHHhcCCCcc-c
Confidence 1111 11388999999999999999999999999999986 8
Q ss_pred ceEEEEEeeecCc-----eeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEecCCCCCCccccccccccc
Q 000821 1097 CMAVLIQETICGD-----YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIG 1171 (1267)
Q Consensus 1097 ~MAVLVQemV~ad-----~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f~v~K~~~~~~~vl~~~sk~ig 1171 (1267)
.|||+||+||.++ .|||+||+||.||+...+-.-.+.|+||.||+|.+ +|+.|. . .
T Consensus 238 g~AV~VQ~MV~gn~~~~s~SGV~FTrdP~TG~~~~~Ge~l~~aqGedVVsG~~-tp~~~~----~-----l--------- 298 (879)
T PRK09279 238 GTAVNVQAMVFGNMGEDSGTGVAFTRNPSTGEKKLYGEFLINAQGEDVVAGIR-TPQPIP----S-----L--------- 298 (879)
T ss_pred CceEEEEeccccCCCCCcceEEEEeCCCCCCCCceeEEEecCCCChhhhcCcc-CcchhH----H-----H---------
Confidence 9999999999766 59999999999998754333346799999999976 554330 0 0
Q ss_pred ccCCceEEeecCCCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCCCeeEEE
Q 000821 1172 LYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEG 1251 (1267)
Q Consensus 1172 ~~~~~~~i~rsdsngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rLa~la~~IE~~fG~PQDIEw 1251 (1267)
+ . ..++ .+++|++++..||++||.||||||
T Consensus 299 ------------------~--------------------------~-~~p~-----~~~~L~~~~~~LE~~f~~pqDIEf 328 (879)
T PRK09279 299 ------------------E--------------------------E-AMPE-----VYAELVDIAKKLEKHYRDMQDIEF 328 (879)
T ss_pred ------------------h--------------------------h-cChH-----HHHHHHHHHHHHHHHhCCCeeeEE
Confidence 0 0 0112 278999999999999999999999
Q ss_pred EEECCeEEEEeeccC
Q 000821 1252 VLKDGLIYVVQARPQ 1266 (1267)
Q Consensus 1252 ai~~g~LyILQaRPq 1266 (1267)
+|++|+|||||+||.
T Consensus 329 tie~g~L~iLQtRp~ 343 (879)
T PRK09279 329 TIERGKLYMLQTRNG 343 (879)
T ss_pred EEECCEEEEEEeCCc
Confidence 999999999999995
No 10
>PRK05849 hypothetical protein; Provisional
Probab=99.93 E-value=1.8e-25 Score=277.89 Aligned_cols=193 Identities=20% Similarity=0.173 Sum_probs=143.2
Q ss_pred CCccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChHHHHHHHHHHHcCCCCH
Q 000821 961 PDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPL 1040 (1267)
Q Consensus 961 ~~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~I~~l~a~l~~~d~~~L~~IR~~I~~~~lP~ 1040 (1267)
.-.+|+||++|+.|++++ .+++||+++++|...+.. .. ...+ +.|+..+ +
T Consensus 5 ~~~~~~KA~tL~~L~~~~-~~~~i~~~~v~~~~e~~~---~~-----~~~~---------------~~i~~~~-----~- 54 (783)
T PRK05849 5 ELFFQTKAETLANLQPIL-KKAKILPLLLFSVREWLS---NK-----DKVL---------------EEIQNSF-----P- 54 (783)
T ss_pred ccccchHHHHHHHHHhhh-cCCCCCCeEEeCHHhhcc---CH-----HHHH---------------HHHHHhc-----C-
Confidence 347899999999999976 689999999999864432 11 1111 1222111 0
Q ss_pred HHHHHHHHHHHhcC-------CCCCCCcc---------HHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcccceEEEEEe
Q 000821 1041 SLIYELKNKMRSSG-------MPWPGDEG---------WNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQE 1104 (1267)
Q Consensus 1041 eL~~eL~~A~RSSg-------~sfAG~~g---------~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQe 1104 (1267)
.-.-++|||+ .||||+|. .+++..||++||||+++ + ..|||+||+
T Consensus 55 ----~~~laVRSSa~~ED~~~~S~AGq~~S~lnV~~~~~~~L~~AI~~V~aS~~~-----------~----~~~aVlVQ~ 115 (783)
T PRK05849 55 ----ADKLIVRSSSRSEDSSSSSNAGAFLSILNVNADSKDQLLKAIEKVIASYGT-----------S----KDDEILVQP 115 (783)
T ss_pred ----CCeEEEECCCcccCCCcCccccCceeEecCCCCcHHHHHHHHHHHHHhhCC-----------C----CCCeEEEEe
Confidence 0023568875 47999981 55999999999999776 2 238999999
Q ss_pred eec-CceeEEEEecCCCCCCCcceeeecccccccccccccCCCCceEEEecCCCCCCcccccccccccccCCceEEeecC
Q 000821 1105 TIC-GDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSD 1183 (1267)
Q Consensus 1105 mV~-ad~SGVlfT~nP~tgd~~ei~Ieav~GLGE~LVsG~~G~pd~f~v~K~~~~~~~vl~~~sk~ig~~~~~~~i~rsd 1183 (1267)
||. +..|||+||+||.+|++..+...+++|+||.||+|.. +|..+.+.+.+
T Consensus 116 MV~~~~~SGV~FTrdP~tg~~~~~iey~~~G~ge~VVsG~~-t~~~~~~~~~~--------------------------- 167 (783)
T PRK05849 116 MLEDIVLSGVAMSRDPESGAPYYVINYDESGSTDSVTSGSG-GSATTVYHYRD--------------------------- 167 (783)
T ss_pred CccCCCceEEEEECCCCCCCCceEEEEcCCCCCcceecccC-CCCceeeeccc---------------------------
Confidence 998 6999999999999998766555556999999999975 55544332110
Q ss_pred CCCcccccccCCCeeeeeecCCccccccccCCCCCCCccccchHHHHHHHHHHHHHHHhcCC-CeeEEEEE-ECCeEEEE
Q 000821 1184 SNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY-PQDIEGVL-KDGLIYVV 1261 (1267)
Q Consensus 1184 sngedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~~l~rLa~la~~IE~~fG~-PQDIEwai-~~g~LyIL 1261 (1267)
.++++++. +++|+++++.||++||+ |||||||+ .+|+||||
T Consensus 168 --------------------------------~~~l~p~~-----~~~L~~la~~LE~~fg~dpqDIEfaid~~g~L~lL 210 (783)
T PRK05849 168 --------------------------------ALVFKPPR-----LKKLIELIRELEALFGCDFLDIEFAIDEKEELYIL 210 (783)
T ss_pred --------------------------------cccCCHHH-----HHHHHHHHHHHHHHcCCCCeeeEEEEccCCEEEEE
Confidence 01233444 78999999999999986 99999999 58999999
Q ss_pred eeccCC
Q 000821 1262 QARPQM 1267 (1267)
Q Consensus 1262 QaRPqv 1267 (1267)
|+||+.
T Consensus 211 Q~RPi~ 216 (783)
T PRK05849 211 QVRPIT 216 (783)
T ss_pred EccCCC
Confidence 999973
No 11
>PLN02784 alpha-amylase
Probab=99.92 E-value=3.8e-25 Score=271.71 Aligned_cols=130 Identities=25% Similarity=0.481 Sum_probs=117.7
Q ss_pred hhhcCCCcceeeeeeecc-eE-----EEEEE-EeeCCceEEEEEecCCCCeEEEeeeecCC--CCcccCCCCCCCCCccc
Q 000821 246 ENSLGADNVISRQSYHMD-HE-----IVVLS-KIISSDYHILVAVNMKGAAILHWGISKCS--PGEWLSPPPDMLPEKSK 316 (1267)
Q Consensus 246 ~~~~~~~~v~~~k~f~~~-~e-----i~V~v-~~~~g~~~V~v~td~~~~lvLHWGv~~~~--~~eW~~PP~~~~P~~S~ 316 (1267)
.+..+.++|+++|+|+++ .| |.|++ ++++|+++|+|+||+|++|||||||++++ ++||.+||++++||||+
T Consensus 68 ~~~~~~~~v~~kk~F~v~~~e~ve~~~~v~l~~~~~g~~kv~v~t~~~~~~vLHWGVs~~~~~~~EW~~PP~~~~PpgS~ 147 (894)
T PLN02784 68 VETAQSDDVFFKETFPVKRTEKVEGKIYVRLEEKNEKNWKLSVGCSIPGKWILHWGVSYVGDTGSEWDQPPEEMRPPGSI 147 (894)
T ss_pred eeccccccceeeeeeeecccceecceeEEEEEccCCCcEEEEEEecCCCCeEEEEeEecCCCCCccccCCCcccCCCCcE
Confidence 345568999999999999 66 45555 77899999999999999999999999987 69999999999999999
Q ss_pred cc-cceeeeeeecccCCCcceeE-EEEEecCCceeEEEEEEec--CCcccccCCcceEEecCCC
Q 000821 317 MV-AGACQTYFTDIATARGSFQM-VDVNLQKRKFVGIQFVIWS--GGSWIKNNGENFFVGLHPM 376 (1267)
Q Consensus 317 ~~-~~A~eT~f~~~~~~~~~~~~-lei~l~~~~~~gi~FVLk~--~~~W~k~~G~DF~V~l~~~ 376 (1267)
.+ ++||||||++.+.+..++++ |+|+++ +.|+||+||||+ +|+||||||+||||||+..
T Consensus 148 ~~~~~A~eT~f~~~s~~~~~~~v~iel~l~-~~~~ai~FVLk~~~~g~W~~~~G~DF~V~l~~~ 210 (894)
T PLN02784 148 AIKDYAIETPLKKSSEGDSFYEVTIDLDPN-SSIAAINFVLKDEETGAWYQHKGRDFKVPLVDD 210 (894)
T ss_pred EecCeEEeccccccccCCcceeEEEEEeeC-CceeeEEEEEEeCCCCchhhcCCccEEEecccc
Confidence 98 89999999998888888886 899885 899999999999 5999999999999999975
No 12
>PLN02316 synthase/transferase
Probab=97.16 E-value=0.013 Score=77.02 Aligned_cols=90 Identities=13% Similarity=0.303 Sum_probs=57.2
Q ss_pred EEEeecCCCCCceEEEEEEEeec----CCceEEEeeeeecCCCccccCCCCCCCcccccccccc---cccEEEEEEecCC
Q 000821 23 LQINASGSSIGRNVRVQFQLRNC----ARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKS---GEIYLVTIELRDP 95 (1267)
Q Consensus 23 ~~~~~~~~~~g~~~~v~~~~~~~----~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~---g~~~~~~i~~~d~ 95 (1267)
+-|.=.-...|+.++|-+-..+. ..++++|=|+ ..|...+ .-++++|+ ||.-..++.+++.
T Consensus 143 ~f~~P~~~~a~~~~~v~~n~~~~~L~~~~~v~i~~gf-----N~W~~~~-------f~~~~~k~~~~g~ww~~~v~Vp~~ 210 (1036)
T PLN02316 143 LFVYPQVVKPDSDIEVYLNRSLSTLANEPDVLIMGAF-----NGWRWKS-------FTERLEKTELGGDWWSCKLHIPKE 210 (1036)
T ss_pred EEeccccccCCCeeEEEEcCCCCccCCCCceEEEecc-----ccccccc-------cceeccccccCCCeEEEEEecCcc
Confidence 33333334556666666554442 3456666443 4565532 22333443 7777777777666
Q ss_pred cceeEEEEEEeccccccccccCCcccccCCC
Q 000821 96 KIHAIEFILKDGIHDRWLRLNHGNFRIEIPE 126 (1267)
Q Consensus 96 ~~~ai~Fvl~d~~~~~W~k~~g~nf~v~l~~ 126 (1267)
+.. |+|||.|+ .+.|=+|+|.||+++++.
T Consensus 211 A~~-ldfVf~~g-~~~yDNN~~~Df~~~V~~ 239 (1036)
T PLN02316 211 AYK-MDFVFFNG-QNVYDNNDHKDFCVEIEG 239 (1036)
T ss_pred ceE-EEEEEeCC-ccccccCCCCceEEEeCC
Confidence 554 99999998 678999999999999863
No 13
>PRK05849 hypothetical protein; Provisional
Probab=96.56 E-value=0.021 Score=73.48 Aligned_cols=176 Identities=13% Similarity=0.087 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHH----HHhhCchHHHhhhhcCccchhhccccHHHHhhhhhHH----HHHHHHhhHHH
Q 000821 736 ALQAKAILDRLQLVLA--ERSQTY----QKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAV----LSILINRFEPV 805 (1267)
Q Consensus 736 AL~~kA~ldR~r~~~~--~~~~~~----~~~~~~~a~~lG~~lg~e~~~v~~F~Ee~IR~s~~f~----lS~l~~~l~p~ 805 (1267)
...++..++++|.+++ +++-.. ....-.....+|..||+++.-+--++-+.|++...-. ....+..+-..
T Consensus 571 ~~~~~~ll~~~r~~i~~RE~~Kf~~tr~l~~~r~~l~~lG~~Lg~~~dDvf~L~~~El~~~~~~~~~~~~~~~l~~~i~~ 650 (783)
T PRK05849 571 NIDAEEFLDFLKEAIEGRELVKFEFTRNLSDALELIALLGAYYGISREDLSHLDIKDLLNLYSSLLSINPKELFLEEIKR 650 (783)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeecHHHHHHHHhccccccchhhHHHHHHH
Confidence 3557888888888877 333222 2223333446788889877777667777676522110 11222211111
Q ss_pred HHHH----h--cCC-----------------CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccc-c-CC
Q 000821 806 LRKV----A--NLG-----------------CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEE-I-PV 860 (1267)
Q Consensus 806 lr~~----a--~~~-----------------~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EE-I-P~ 860 (1267)
.++. . ... .=..++||.+.|.++++..-. . ....-.|||+..+|=.=+ + ..
T Consensus 651 rk~~~~~~~~~~~P~li~~~~~~~~~~~~~~~~n~is~g~v~g~v~v~~~~~---~-~~~~G~Ilv~~~tdPg~~~lf~~ 726 (783)
T PRK05849 651 NKQEYELTRSLKLPPLICSADDVYSFEIHESKPNFITQKRVEATVADLDNDN---D-DDLEGKIVCIENADPGYDWLFTK 726 (783)
T ss_pred HHHHHHHHhcCCCCCeeccCCccccccccCCCCCCccCCEEEEEEEEecChh---h-cCCCCCEEEeCCCCccchHHHhh
Confidence 1111 0 000 012379999999999987532 1 112356999987642111 1 12
Q ss_pred CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEcCCceE
Q 000821 861 GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 918 (1267)
Q Consensus 861 ~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 918 (1267)
+++||||..-+ ..||.+++||.+|||-+.--.....+.+ .+|+.|.+....+.|.
T Consensus 727 ~i~g~Vte~Gg-~~SH~AI~ARe~gIPavvg~~~~~~~~~--~~g~~v~vDg~~G~v~ 781 (783)
T PRK05849 727 GIAGLITCYGG-ANSHMAIRAAELGLPAVIGVGEELFEKW--LKAKRILLDCASQRIE 781 (783)
T ss_pred heeEEEEcCCC-cccHHHHHHHHcCCCEEEccCcchhhhc--cCCCEEEEECCCCEEE
Confidence 69999998776 8999999999999999654321112322 3688888877665443
No 14
>PRK08296 hypothetical protein; Provisional
Probab=95.86 E-value=0.012 Score=73.70 Aligned_cols=97 Identities=19% Similarity=0.159 Sum_probs=70.1
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000821 816 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 893 (1267)
Q Consensus 816 qvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 893 (1267)
..++||.+.|.+++|....+.. ....+.|||+..++- +.+| ..+.||||..-. .+||.++.||+.|||-+..-.
T Consensus 503 ~~~s~G~v~G~vrvv~~~~~~~--~~~~g~ILV~~~tdP-~~~~~~~~~~GiVte~Gg-~~SHaAIvARe~GIPaVvgv~ 578 (603)
T PRK08296 503 FAASPGVVEGPARVIRSADELS--EVQEGEILVCPVTSP-SWAPIFAKIKATVTDIGG-VMSHAAIVCREYGLPAVVGTG 578 (603)
T ss_pred eecCCCeEEEEEEEeCCHHHHH--hccCceEEEeCCCCH-HHHHHHHHheEEEEecCC-CcchHHHHHHHcCCCEEEcCc
Confidence 4469999999999998865532 234678999986542 2244 269999998765 899999999999999876654
Q ss_pred hHHHHHhhhcCCCeEEEEEcCCceEE
Q 000821 894 QNILRNLRLKEGKAVSIRLKSTNLII 919 (1267)
Q Consensus 894 ~~~~~~l~~l~Gk~V~l~vs~~~v~l 919 (1267)
. ... +-.+|..|.+..+.+.|.+
T Consensus 579 ~-at~--~l~dG~~V~vDg~~G~V~i 601 (603)
T PRK08296 579 N-ATK--RIKTGQRLRVDGTKGVVTI 601 (603)
T ss_pred c-Hhh--hcCCCCEEEEECCCCEEEE
Confidence 2 222 2247999998887765554
No 15
>PLN02316 synthase/transferase
Probab=95.81 E-value=0.27 Score=65.20 Aligned_cols=88 Identities=14% Similarity=0.342 Sum_probs=55.8
Q ss_pred CCCceEEEEEEEee----cCCceEEEeeeeecCCCccccCCCCCCCcccccccccccccEEEEEEecCCcceeEEEEEEe
Q 000821 31 SIGRNVRVQFQLRN----CARTWILHWGFLYRGNTNWFIPAEHPKQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKD 106 (1267)
Q Consensus 31 ~~g~~~~v~~~~~~----~~~~l~lHWGv~~~~~~~W~~P~~~Pk~~a~~Tpf~~~g~~~~~~i~~~d~~~~ai~Fvl~d 106 (1267)
..|.+++|-.--.| .+.++.+|||.. .|.-..+.+ ..-+.++ .+.|+.-..+|.++.. .+-+.||+.|
T Consensus 326 ~aG~~v~lyYN~~~~~L~~~~~v~i~gg~N-----~W~~~~~~~-~~~~~~~-~~~g~ww~a~v~vP~~-A~~mDfVFsd 397 (1036)
T PLN02316 326 KAGDTVKLYYNRSSGPLAHSTEIWIHGGYN-----NWIDGLSIV-EKLVKSE-EKDGDWWYAEVVVPER-ALVLDWVFAD 397 (1036)
T ss_pred CCCCEEEEEECCCCCCCCCCCcEEEEEeEc-----CCCCCCccc-ceeeccc-CCCCCEEEEEEecCCC-ceEEEEEEec
Confidence 34555554443333 377899999995 454433311 0112222 1137767776666644 5779999999
Q ss_pred c---cccccccccCCcccccCCC
Q 000821 107 G---IHDRWLRLNHGNFRIEIPE 126 (1267)
Q Consensus 107 ~---~~~~W~k~~g~nf~v~l~~ 126 (1267)
+ ..+.|=+++|.|||++++.
T Consensus 398 g~~~~~~~yDNn~~~Dyh~~v~~ 420 (1036)
T PLN02316 398 GPPGNARNYDNNGRQDFHAIVPN 420 (1036)
T ss_pred CCcccccccccCCCcceeeecCC
Confidence 7 3568999999999999874
No 16
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=95.64 E-value=0.012 Score=55.17 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=47.4
Q ss_pred CCCeEEEEeCCCCcccc-C-CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEc
Q 000821 842 RRPTIIIASRITGEEEI-P-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK 913 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~EEI-P-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs 913 (1267)
..++||+++..+-.+-. . .+++||||.+-. ++||.++.||.+|||.+..-.. .... -.+|.+|.+..+
T Consensus 9 ~~~~IlV~~~~~p~~~~~~~~~~~Giv~~~Gg-~~SH~aIlAr~~giP~ivg~~~-~~~~--i~~g~~v~lDg~ 78 (80)
T PF00391_consen 9 PEGVILVAEELTPSDLALDLQRVAGIVTEEGG-PTSHAAILARELGIPAIVGVGD-ATEA--IKDGDWVTLDGN 78 (80)
T ss_dssp TSTEEEEESS--TTCHHSHHTTSSEEEESSSS-TTSHHHHHHHHTT-EEEESTTT-HHHH--SCTTEEEEEETT
T ss_pred CCCEEEEECCCCHHHHhcchhheEEEEEEcCC-ccchHHHHHHHcCCCEEEeecc-Hhhc--cCCCCEEEEECC
Confidence 46789999976555433 1 379999998875 8999999999999999776652 2222 236888887543
No 17
>PRK06241 phosphoenolpyruvate synthase; Validated
Probab=95.35 E-value=0.025 Score=74.18 Aligned_cols=93 Identities=16% Similarity=0.166 Sum_probs=68.8
Q ss_pred eeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecchH
Q 000821 818 ISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQN 895 (1267)
Q Consensus 818 lspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~ 895 (1267)
+++|.+.|.++++....+. ......|||+...++. ..| ..+.||||..-+ .+||.+|.||..|||-++.-. +
T Consensus 773 ~~~G~v~G~v~v~~~~~~~---~~~~g~ILV~~~~~p~-~~~~~~~~~giv~~~Gg-~~sH~aIvare~gIPavv~~~-~ 846 (871)
T PRK06241 773 VSSGVVEGRARVILNPEDA---DLEKGDILVTAFTDPG-WTPLFVSIKGLVTEVGG-LMTHGAVIAREYGIPAVVGVE-N 846 (871)
T ss_pred cCCCeEEEEEEEECCHHHc---CCCCCeEEEecCCCHH-HHHHHHhceEEEEcCCC-cchHHHHHHHhcCCCEEEccc-c
Confidence 6899999999998875543 2345679999987763 344 279999887665 999999999999999876443 2
Q ss_pred HHHHhhh-cCCCeEEEEEcCCceEE
Q 000821 896 ILRNLRL-KEGKAVSIRLKSTNLII 919 (1267)
Q Consensus 896 ~~~~l~~-l~Gk~V~l~vs~~~v~l 919 (1267)
. .+. .+|..|.+......|.+
T Consensus 847 ~---~~~l~~G~~v~lDg~~G~v~i 868 (871)
T PRK06241 847 A---TKLIKDGQRIRVDGTEGYVEI 868 (871)
T ss_pred H---HhhcCCCCEEEEECCCCEEEE
Confidence 2 223 37999998877655544
No 18
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.10 E-value=0.12 Score=49.51 Aligned_cols=65 Identities=26% Similarity=0.563 Sum_probs=37.7
Q ss_pred CeEEEeeeecCCCCcccCCCCCCCCCccccccceeeeeeecccC-CCcceeEEEEEecCCceeEEEEEEecC-CcccccC
Q 000821 288 AAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIAT-ARGSFQMVDVNLQKRKFVGIQFVIWSG-GSWIKNN 365 (1267)
Q Consensus 288 ~lvLHWGv~~~~~~eW~~PP~~~~P~~S~~~~~A~eT~f~~~~~-~~~~~~~lei~l~~~~~~gi~FVLk~~-~~W~k~~ 365 (1267)
.+.||+|... |..+|. .+|++... ....+-..+|+++.+.. .|.||++++ ++|=+|+
T Consensus 20 ~v~~~~G~n~-----W~~~~~---------------~~m~~~~~~~~~~~~~~tv~vP~~a~-~~dfvF~dg~~~wDNN~ 78 (87)
T PF03423_consen 20 NVHLHGGFNR-----WTHVPG---------------FGMTKMCVPDEGGWWKATVDVPEDAY-VMDFVFNDGAGNWDNNN 78 (87)
T ss_dssp EEEEEETTS------B-SSS----------------EE-EEESS---TTEEEEEEE--TTTS-EEEEEEE-SSS-EESTT
T ss_pred cEEEEecCCC-----CCcCCC---------------CCcceeeeeecCCEEEEEEEEcCCce-EEEEEEcCCCCcEeCCC
Confidence 4789999754 987764 22222111 11223345677766655 799999998 8999999
Q ss_pred CcceEEec
Q 000821 366 GENFFVGL 373 (1267)
Q Consensus 366 G~DF~V~l 373 (1267)
|.||+++.
T Consensus 79 g~nY~~~V 86 (87)
T PF03423_consen 79 GANYHFPV 86 (87)
T ss_dssp TS-EEEES
T ss_pred CccEEEEc
Confidence 99999985
No 19
>PRK05865 hypothetical protein; Provisional
Probab=93.53 E-value=0.14 Score=66.83 Aligned_cols=98 Identities=17% Similarity=0.062 Sum_probs=69.2
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000821 816 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 893 (1267)
Q Consensus 816 qvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 893 (1267)
..++||.+.|.+++|.. .+ ......+.|||+...+-. .+| ..+.||||..-. .+||.++.||..|||-+.+-.
T Consensus 739 ~~~s~G~v~G~vrvv~~-~~--~~~~~~g~ILVa~~tdp~-~~~~~~~a~giVte~Gg-~~SH~AIvARe~gIPaVvgv~ 813 (854)
T PRK05865 739 VGVCGGRVRGRVRIVRP-ET--IDDLQPGEILVAEVTDVG-YTAAFCYAAAVVTELGG-PMSHAAVVAREFGFPCVVDAQ 813 (854)
T ss_pred eeccCCccEEEEEEecH-HH--hhhcCCCeEEEeCCCCHH-HHHHHHHheEEEeccCC-CccHHHHHHHHcCCCEEEccc
Confidence 34699999999999972 22 123456789999864311 123 269999998765 899999999999999987654
Q ss_pred hHHHHHhhhcCCCeEEEEEcCCceEEee
Q 000821 894 QNILRNLRLKEGKAVSIRLKSTNLIISD 921 (1267)
Q Consensus 894 ~~~~~~l~~l~Gk~V~l~vs~~~v~l~~ 921 (1267)
. +.. .-.+|..|.+..+...|.+-+
T Consensus 814 ~-at~--~l~dG~~V~vDg~~G~V~~l~ 838 (854)
T PRK05865 814 G-ATR--FLPPGALVEVDGATGEIHVVE 838 (854)
T ss_pred c-Hhh--cCCCCCEEEEECCCcEEEEec
Confidence 2 222 123899999988876666543
No 20
>PRK06354 pyruvate kinase; Provisional
Probab=93.25 E-value=0.1 Score=65.67 Aligned_cols=95 Identities=14% Similarity=0.187 Sum_probs=69.0
Q ss_pred EEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000821 816 QVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 893 (1267)
Q Consensus 816 qvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 893 (1267)
+..+||.+.|.++++....+. .....+.|||++..+- +.+|. .+.||||..-. ..||.++.||.+|||-+..-.
T Consensus 486 ~~as~G~~~G~v~~~~~~~~~--~~~~~~~ILV~~~~~P-~~~~~~~~~~GiVt~~Gg-~tSH~AIvAR~lgIPaVvg~~ 561 (590)
T PRK06354 486 QGIGRKSVSGKARVAKTAAEV--AKVNEGDILVTPSTDA-DMIPAIEKAAAIITEEGG-LTSHAAVVGLRLGIPVIVGVK 561 (590)
T ss_pred cccccccccceEEEeCChHhh--ccCCCCeEEEeCCCCH-HHHHhHHhcEEEEEecCC-CcchHHHHHHhcCCCEEEecc
Confidence 456889999999998875542 3345688999986554 44553 79999998765 899999999999999977654
Q ss_pred hHHHHHhhhcCCCeEEEEEcCCce
Q 000821 894 QNILRNLRLKEGKAVSIRLKSTNL 917 (1267)
Q Consensus 894 ~~~~~~l~~l~Gk~V~l~vs~~~v 917 (1267)
.. .. .-.+|..|.+......|
T Consensus 562 ~~-~~--~l~~G~~v~vDg~~G~V 582 (590)
T PRK06354 562 NA-TS--LIKDGQIITVDAARGVV 582 (590)
T ss_pred ch-hh--ccCCCCEEEEECCCCEE
Confidence 22 22 22468888887665433
No 21
>TIGR01418 PEP_synth phosphoenolpyruvate synthase. Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes.
Probab=93.21 E-value=0.13 Score=66.78 Aligned_cols=94 Identities=16% Similarity=0.220 Sum_probs=68.6
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEe
Q 000821 814 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 891 (1267)
Q Consensus 814 ~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 891 (1267)
.=..++||.+.|.++++....+.. ....+.|||+...+- +++|. .+.||||..-. ..||.++.||+.|||-+..
T Consensus 356 ~G~~~~~G~~~G~v~v~~~~~d~~--~~~~g~ILV~~~~~p-~~~~~l~~~~giVte~Gg-~tSH~AivAR~lgIPavvg 431 (782)
T TIGR01418 356 TGRAAGPGIASGKVKVIFDLKEMD--KFEEGDILVTDMTDP-DWEPAMKRASAIVTNEGG-MTCHAAIVARELGIPAVVG 431 (782)
T ss_pred cCcccCCCceEEEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHhHhheEEEEcCCC-CccHHHHHHHhcCCCEEEc
Confidence 345679999999999998876643 344577999985433 22442 79999998776 8999999999999998654
Q ss_pred cchHHHHHhhhcCCCeEEEEEcC
Q 000821 892 FDQNILRNLRLKEGKAVSIRLKS 914 (1267)
Q Consensus 892 ~d~~~~~~l~~l~Gk~V~l~vs~ 914 (1267)
-. +....+ .+|..|.+....
T Consensus 432 ~~-~~~~~l--~~G~~v~vDg~~ 451 (782)
T TIGR01418 432 TG-DATKTL--KDGMEVTVDCAE 451 (782)
T ss_pred cc-chhhcc--cCCCEEEEEcCC
Confidence 32 222222 369999988876
No 22
>PRK11377 dihydroxyacetone kinase subunit M; Provisional
Probab=92.73 E-value=0.16 Score=62.41 Aligned_cols=68 Identities=22% Similarity=0.245 Sum_probs=48.9
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEE
Q 000821 842 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 912 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 912 (1267)
+.|.|||++ |+.| +|.||+|..-. ..||.+++||.+|||-+.=-. +.+. .-.+|..|-+..
T Consensus 395 ~~~~ILVA~------dLtPSd~a~Ld~~~V~Givt~~GG-~TSHtAILARslgIPaVvg~~-~~~~--~~~~G~~vilDG 464 (473)
T PRK11377 395 NSPTILLAE------NIYPSTVLQLDPAVVKGICLSAGS-PLSHSAIIARELGIGWICQQG-EKLY--AIQPEETLTLDV 464 (473)
T ss_pred CCCEEEEEC------CCCHHHHHhcCHhHeEEEEECCCC-cccHHHHHHHHcCCCEEEcch-hhHh--hccCCCEEEEEC
Confidence 468899987 5554 69999998776 899999999999999744322 1222 224688888877
Q ss_pred cCCceEE
Q 000821 913 KSTNLII 919 (1267)
Q Consensus 913 s~~~v~l 919 (1267)
....+.+
T Consensus 465 ~~G~v~v 471 (473)
T PRK11377 465 KTQRLNR 471 (473)
T ss_pred CCCEEEe
Confidence 6655543
No 23
>PRK05878 pyruvate phosphate dikinase; Provisional
Probab=92.73 E-value=0.16 Score=63.11 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=65.5
Q ss_pred CCCcEEeeeeeEEEEEEE-ecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCcee
Q 000821 812 LGCWQVISPVEVCGFITS-VNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCF 888 (1267)
Q Consensus 812 ~~~wqvlspG~a~G~L~~-V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~ 888 (1267)
+..=..++||.+.|+++. .++..+. .....+.|||+...+ -++++. .+.||||..-. ..||.++.||++|||-
T Consensus 350 l~~G~~as~G~a~G~V~~~~~~~~~~--~~~~~g~ILV~~~t~-P~~~~~~~~a~GIVte~Gg-~tSHaAivARelgiP~ 425 (530)
T PRK05878 350 LAKGLPACPGVVSGTAYTDVDEALDA--ADRGEPVILVRDHTR-PDDVHGMLAAQGIVTEVGG-ATSHAAVVSRELGRVA 425 (530)
T ss_pred eccCeeccCceEEEEEEECHHHHHHH--hhccCCEEEEECCCC-HHHHhhhHhheEEEEccCC-ccchHHHHHHHcCCCE
Confidence 345566899999999864 2222211 122346788887542 222442 69999998776 8999999999999999
Q ss_pred EEecchHHHHHhhhcCCCeEEEEEcCCce
Q 000821 889 ATCFDQNILRNLRLKEGKAVSIRLKSTNL 917 (1267)
Q Consensus 889 at~~d~~~~~~l~~l~Gk~V~l~vs~~~v 917 (1267)
+..-... ...+ .+|..|.+......|
T Consensus 426 VvG~~~~-~~~~--~~G~~VtvDg~~G~V 451 (530)
T PRK05878 426 VVGCGAG-VAAA--LAGKEITVDGYEGEV 451 (530)
T ss_pred EEcccch-hhcc--CCCCEEEEECCCCEE
Confidence 8754322 2223 469999887765444
No 24
>PRK06464 phosphoenolpyruvate synthase; Validated
Probab=92.69 E-value=0.13 Score=67.04 Aligned_cols=99 Identities=14% Similarity=0.123 Sum_probs=67.6
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccC--CCcEEEEcCCCCCccchhhhhcccCCceeEE-
Q 000821 814 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIP--VGVVAVLTPDMPDVLSHVSIRARNNKVCFAT- 890 (1267)
Q Consensus 814 ~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP--~~VaGVit~~~~~~LSHv~VRARn~gVp~at- 890 (1267)
.=..++||.++|.++++....+.. ....+.|||++..+= ++++ ..+.||||..-. ..||.++.||++|||-+.
T Consensus 358 ~G~~~~~G~~~G~v~v~~~~~~~~--~~~~g~ILV~~~~~p-~~~~~l~~~~givt~~Gg-~tSH~AilAR~lgIPavvg 433 (795)
T PRK06464 358 EGRAIGPGIGSGKVRVILDISEMD--KVQPGDVLVTDMTDP-DWEPVMKRASAIVTNRGG-RTCHAAIIARELGIPAVVG 433 (795)
T ss_pred eCcccCCCceeeEEEEeCCHHHHH--hcCCCeEEEECCCCH-HHHHHHHhheEEEEcCCC-CcchHHHHHHHcCCCEEEc
Confidence 344578999999999998766543 234567888875422 3333 279999998765 899999999999999743
Q ss_pred ecchHHHHHhhhcCCCeEEE---EEcCCceEEe
Q 000821 891 CFDQNILRNLRLKEGKAVSI---RLKSTNLIIS 920 (1267)
Q Consensus 891 ~~d~~~~~~l~~l~Gk~V~l---~vs~~~v~l~ 920 (1267)
|.+ ....+ .+|..|.+ ......|...
T Consensus 434 ~~~--~~~~l--~~G~~v~v~~~Dg~~G~v~~~ 462 (795)
T PRK06464 434 TGN--ATEVL--KDGQEVTVSCAEGDTGYVYEG 462 (795)
T ss_pred cCc--cccee--cCCCEEEEEeccCCCcEEEeC
Confidence 333 22222 36999988 5544444443
No 25
>PRK09279 pyruvate phosphate dikinase; Provisional
Probab=91.93 E-value=0.15 Score=66.77 Aligned_cols=105 Identities=17% Similarity=0.123 Sum_probs=66.6
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEe
Q 000821 814 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 891 (1267)
Q Consensus 814 ~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 891 (1267)
.=...|||.|+|.+++...-..- -.....+.|||.... --++++- .+.||||..-. ..||.+|.||++|||-++.
T Consensus 396 ~G~~aspGaa~G~v~~~~~~a~~-~~~~~~~~ILV~~et-~P~di~~m~~a~GIvT~~GG-~TSHAAIVAR~lGiP~VvG 472 (879)
T PRK09279 396 KGLPASPGAATGKIVFTADEAEA-LAARGEKVILVRPET-SPEDIHGMHAAEGILTARGG-MTSHAAVVARGMGKPCVVG 472 (879)
T ss_pred CCcccCCCeEEEEEEEChHHHHH-hhccCCCEEEEECCC-CHHHHhhhhHeeEEEEeCCC-ccchHHHHHHHcCCCEEec
Confidence 33456999999999774332111 112235678877743 3334442 58899998766 8999999999999999654
Q ss_pred cchHHHH---------HhhhcCCCeEEEEEcCCceEEee
Q 000821 892 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 921 (1267)
Q Consensus 892 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 921 (1267)
-....++ .-.-.+|..|.+..+...|...+
T Consensus 473 ~~~~~id~~~~~~~~~~~~l~~Gd~VtIDG~~G~V~~g~ 511 (879)
T PRK09279 473 AGALRIDEKAKTFTVGGGTLKEGDVITIDGSTGEVYLGE 511 (879)
T ss_pred cCcceEecccCEEEECCEEecCCCEEEEECCCCEEEECC
Confidence 3311111 11224688888887776665544
No 26
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=91.85 E-value=0.44 Score=45.57 Aligned_cols=67 Identities=24% Similarity=0.484 Sum_probs=40.3
Q ss_pred CCceEEEeeeeecCCCccccCCC-CC-CCcccccccccccccEEEEEEecCCcceeEEEEEEeccccccccccCCccccc
Q 000821 46 ARTWILHWGFLYRGNTNWFIPAE-HP-KQGALQTPFVKSGEIYLVTIELRDPKIHAIEFILKDGIHDRWLRLNHGNFRIE 123 (1267)
Q Consensus 46 ~~~l~lHWGv~~~~~~~W~~P~~-~P-k~~a~~Tpf~~~g~~~~~~i~~~d~~~~ai~Fvl~d~~~~~W~k~~g~nf~v~ 123 (1267)
+..+.||+|. +.|..++. .| +..+ + ..++....+|+++..+ ..|+|||+|. .+.|=.++|.||+++
T Consensus 18 ~~~v~~~~G~-----n~W~~~~~~~m~~~~~---~--~~~~~~~~tv~vP~~a-~~~dfvF~dg-~~~wDNN~g~nY~~~ 85 (87)
T PF03423_consen 18 APNVHLHGGF-----NRWTHVPGFGMTKMCV---P--DEGGWWKATVDVPEDA-YVMDFVFNDG-AGNWDNNNGANYHFP 85 (87)
T ss_dssp S-EEEEEETT-----S-B-SSS-EE-EEESS--------TTEEEEEEE--TTT-SEEEEEEE-S-SS-EESTTTS-EEEE
T ss_pred CCcEEEEecC-----CCCCcCCCCCcceeee---e--ecCCEEEEEEEEcCCc-eEEEEEEcCC-CCcEeCCCCccEEEE
Confidence 4568899996 57977765 22 1111 1 1156677778776544 4699999998 899999999999987
Q ss_pred C
Q 000821 124 I 124 (1267)
Q Consensus 124 l 124 (1267)
+
T Consensus 86 V 86 (87)
T PF03423_consen 86 V 86 (87)
T ss_dssp S
T ss_pred c
Confidence 4
No 27
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase. This model represents pyruvate,phosphate dikinase, also called pyruvate,orthophosphate dikinase. It is similar in sequence to other PEP-utilizing enzymes.
Probab=90.60 E-value=0.27 Score=64.42 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=67.3
Q ss_pred CcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEe
Q 000821 814 CWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATC 891 (1267)
Q Consensus 814 ~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~ 891 (1267)
.=...+||.++|++++...-.... .....+.|||....+ -++++- .+.||||..-. ..||.++.||++|||-++.
T Consensus 390 ~G~~aspG~a~G~v~~~~~~a~~~-~~~~~~~ILV~~~t~-P~d~~~~~~a~Givt~~GG-~tSHaAivAR~lgiP~VvG 466 (856)
T TIGR01828 390 KGLPASPGAATGKIVFSAEDAVEL-AEKGKKVILVREETS-PEDIEGMHVAEGILTARGG-MTSHAAVVARGMGKCCVSG 466 (856)
T ss_pred cCcccCCCeEEEEEEEchHHHHHH-hhcCCCEEEEECCCC-HHHHhhhhhheEEEEccCC-CcchHHHHHHHcCCCEEEc
Confidence 334579999999997763321110 122456788887542 223442 68999998876 8999999999999999664
Q ss_pred cchHHHH---------HhhhcCCCeEEEEEcCCceEEee
Q 000821 892 FDQNILR---------NLRLKEGKAVSIRLKSTNLIISD 921 (1267)
Q Consensus 892 ~d~~~~~---------~l~~l~Gk~V~l~vs~~~v~l~~ 921 (1267)
-....++ .-.-.+|..|.+..+...|...+
T Consensus 467 ~~~~~id~~~~~~~~~~~~l~~Gd~VtvDg~~G~V~~g~ 505 (856)
T TIGR01828 467 CEELKINEEAKTFTIGGRVFHEGDIISIDGSTGEIYLGE 505 (856)
T ss_pred ccccccccccceeeeCCeEecCCCEEEEECCCCEEEECC
Confidence 4321111 11224688888877765555543
No 28
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=89.08 E-value=0.51 Score=59.49 Aligned_cols=78 Identities=21% Similarity=0.256 Sum_probs=54.3
Q ss_pred CCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEcCCceE
Q 000821 842 RRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLI 918 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~ 918 (1267)
..|.|||++..+-.+ .++ .+|.||||..-. ..||.+++||++|||-+..-. +.... -.+|..|.+......|.
T Consensus 153 ~~~~ILVa~~l~Ps~~~~l~~~~i~Givt~~Gg-~tSH~AIlAr~lgIPavvg~~-~~~~~--~~~G~~vilDg~~G~v~ 228 (575)
T PRK11177 153 QEEVILVAADLTPSETAQLNLKKVLGFITDIGG-RTSHTSIMARSLELPAIVGTG-NITKQ--VKNGDYLILDAVNNQIY 228 (575)
T ss_pred CCCeEEEecCCCHHHHhhhhhhheeEEEEcCCC-cccHHHHHHHHcCCCEEEcCh-hHHhh--ccCCCEEEEECCCCEEE
Confidence 457788887543322 111 269999998776 899999999999999765443 22222 23699999888877777
Q ss_pred EeecC
Q 000821 919 ISDIS 923 (1267)
Q Consensus 919 l~~~~ 923 (1267)
+.+..
T Consensus 229 ~~P~~ 233 (575)
T PRK11177 229 VNPTN 233 (575)
T ss_pred ECCCH
Confidence 76643
No 29
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=88.29 E-value=0.67 Score=58.40 Aligned_cols=76 Identities=22% Similarity=0.188 Sum_probs=52.8
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEcCCce
Q 000821 842 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 917 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v 917 (1267)
..|.|||++..+=. ++. .++.||+|..-. ..||.++.||++|||-+..-. +.... -.+|..|.+....+.|
T Consensus 152 ~~~~IlVa~~l~Ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAR~lgIP~vvg~~-~~~~~--~~~G~~v~vDg~~G~v 226 (565)
T TIGR01417 152 QDEVILVAEDLTPS-ETAQLNLKYVKGFLTDAGG-KTSHTAIMARSLEIPAIVGTK-SVTSQ--VKNGDTVIIDGVKGIV 226 (565)
T ss_pred CCCeEEEecCCCHH-HHHHhhhhheeEEEEccCC-CcchHHHHHHHcCCCEEEcch-hHHhh--CCCCCEEEEECCCCEE
Confidence 45778888743211 221 269999998765 899999999999999765543 22222 2369999998887777
Q ss_pred EEeec
Q 000821 918 IISDI 922 (1267)
Q Consensus 918 ~l~~~ 922 (1267)
.+.+.
T Consensus 227 ~~~P~ 231 (565)
T TIGR01417 227 IFNPS 231 (565)
T ss_pred EeCCC
Confidence 77653
No 30
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=86.60 E-value=0.99 Score=56.16 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=56.6
Q ss_pred CCCeEEEEeCCCCccccCC---------CcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEE
Q 000821 842 RRPTIIIASRITGEEEIPV---------GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRL 912 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~EEIP~---------~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~v 912 (1267)
++|.||+++ |+.| .|.|++|..-+ ..||.++.||..+||-+.-.... ...++ +|+.|-+..
T Consensus 154 ~~~~IlvA~------dLtPSdta~l~~~~v~Gfvt~~GG-~TSHtAImARsl~IPavVg~~~~-~~~v~--~g~~viiDg 223 (574)
T COG1080 154 DEEVILVAE------DLTPSDTAQLDKKYVKGFVTDIGG-RTSHTAILARSLGIPAVVGLGAA-TLAVK--DGDTLILDG 223 (574)
T ss_pred CCCeEEEEC------CCCHHHHhhcCHhhceeeEecCCC-cccHHHHHHHhcCCCeeecCcHH-hhccc--CCCEEEEEC
Confidence 467888887 6665 59999997766 88999999999999997766633 33333 899999988
Q ss_pred cCCceEEeecC
Q 000821 913 KSTNLIISDIS 923 (1267)
Q Consensus 913 s~~~v~l~~~~ 923 (1267)
..+.+.+.+..
T Consensus 224 ~~G~vi~nP~~ 234 (574)
T COG1080 224 INGEVIVNPDE 234 (574)
T ss_pred CCCeEEECcCH
Confidence 88778887643
No 31
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional
Probab=86.20 E-value=0.86 Score=59.25 Aligned_cols=76 Identities=17% Similarity=0.155 Sum_probs=52.2
Q ss_pred CCCeEEEEeCCCCccccC----CCcEEEEcCCCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEcCCce
Q 000821 842 RRPTIIIASRITGEEEIP----VGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNL 917 (1267)
Q Consensus 842 ~~p~Ill~~~~~G~EEIP----~~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v 917 (1267)
..|.|||++..+-. +++ .+|+||+|..-. ..||.++.||++|||.+.=-+ .... ...|..|.+....+.|
T Consensus 320 ~~~~Ilva~~l~ps-~~~~l~~~~i~Givt~~Gg-~tSH~aIlAr~lgIP~vvg~~--~~~~--~~~G~~vilDg~~G~v 393 (748)
T PRK11061 320 PERFILVADELTAT-LLAELPQDRLAGVVVRDGA-ANSHAAILVRALGIPTVMGAD--IQPS--LLHQRLLIVDGYRGEL 393 (748)
T ss_pred CCCEEEEECCCCHH-HHHhhhhhheEEEEECCCC-CccHHHHHHHHcCCCEEEcCc--chhh--ccCCCEEEEECCCCEE
Confidence 45778888742211 112 169999998876 889999999999999754222 2222 2359999988877778
Q ss_pred EEeecC
Q 000821 918 IISDIS 923 (1267)
Q Consensus 918 ~l~~~~ 923 (1267)
.+.+.+
T Consensus 394 ~vnP~~ 399 (748)
T PRK11061 394 LVDPEP 399 (748)
T ss_pred EeCCCH
Confidence 777643
No 32
>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]
Probab=85.93 E-value=0.95 Score=44.66 Aligned_cols=99 Identities=13% Similarity=0.193 Sum_probs=69.0
Q ss_pred cEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCccccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEec
Q 000821 815 WQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCF 892 (1267)
Q Consensus 815 wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~ 892 (1267)
=|.|-.|.+.|+.++-++-.+... .+..-.||++.+.|+| -+|. -..||||.+.. .-||-+|-+++.|||.+.=.
T Consensus 5 GqgIg~gsv~G~~~vA~~~~~~~~-k~~~g~iLv~~std~d-~v~~~eKa~aiItee~g-lTshaAVvgl~LgvPvIvG~ 81 (111)
T COG3848 5 GQGIGRGSVSGRAVVADSGKEAEQ-KFEEGVILVTPSTDAD-FVPALEKAAAIITEEGG-LTSHAAVVGLELGVPVIVGV 81 (111)
T ss_pred ceeecccceeeEEEEccCHhHhhC-CcccCcEEEeccCChh-hHHHHHhhheeEeccCC-ccccceeeEeecCCcEEEEe
Confidence 366778899999988877555422 2345678888876544 5664 68999999988 99999999999999997744
Q ss_pred chHHHHHhhhcCCCeEEEEEcCCceEEe
Q 000821 893 DQNILRNLRLKEGKAVSIRLKSTNLIIS 920 (1267)
Q Consensus 893 d~~~~~~l~~l~Gk~V~l~vs~~~v~l~ 920 (1267)
+.. .+.+ .+|..|.+..+- ++.++
T Consensus 82 ~~a-t~~i--~dG~~vTvD~~r-G~VY~ 105 (111)
T COG3848 82 KKA-TQLI--RDGAIVTVDAQR-GVVYE 105 (111)
T ss_pred cch-hhhc--cCCCEEEEeccc-ceEEe
Confidence 422 2211 368877765542 45553
No 33
>PRK03955 hypothetical protein; Reviewed
Probab=80.25 E-value=7.7 Score=40.21 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=64.4
Q ss_pred EEeeeeeEEEEEEEeccccc----ccccc-----cC--------CCeEEEEeCCCCccc--------cCCC--cEEEEcC
Q 000821 816 QVISPVEVCGFITSVNELIT----LQNKV-----YR--------RPTIIIASRITGEEE--------IPVG--VVAVLTP 868 (1267)
Q Consensus 816 qvlspG~a~G~L~~V~~l~~----~~~~~-----~~--------~p~Ill~~~~~G~EE--------IP~~--VaGVit~ 868 (1267)
..+++|.+.|.+.+.++--. +.+.+ .. .-.||++....|--- +-.| =+|+|..
T Consensus 6 ~~~~~G~~~Ge~lv~~~~lSf~ggvd~~tG~iid~~h~l~G~si~gkIlv~p~~kGSt~gs~vl~~l~~~g~aP~aiI~~ 85 (131)
T PRK03955 6 RIISKGKAEGEVIVSKKPISFLGGVDPETGIVIDKEHDLYGESIKGKILVFPHGKGSTVGSYVIYQLAKNGTAPKAIINL 85 (131)
T ss_pred EEEeccEEEEEEEEeCCCccccccccCCCCEEEecCCCcCCCccCCEEEEEeCCCcccchHHHHHHHHHcCCCceEEEEe
Confidence 46899999999988764221 11111 01 235899987777621 1112 3688998
Q ss_pred CCCCccchhhhhcccCCceeEEecchHHHHHhhhcCCCeEEEEEcCCceEE
Q 000821 869 DMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLII 919 (1267)
Q Consensus 869 ~~~~~LSHv~VRARn~gVp~at~~d~~~~~~l~~l~Gk~V~l~vs~~~v~l 919 (1267)
+.-+.|||-++-| +||.+...+ .+.|+ +|.+|++..+...|.+
T Consensus 86 ~~~~ils~GaIvA---gIP~V~~~~---~~~l~--~G~~V~Vdg~~G~V~i 128 (131)
T PRK03955 86 EAEPIVATGAIIS---GIPLVDKVD---ISKLK--DGDRVVVDGDEGEVEI 128 (131)
T ss_pred cCCceeEeeeeec---CCceEcccc---ceecC--CCCEEEEeCCCCEEEE
Confidence 8888999999999 999998666 33332 8999998755544544
No 34
>PF11154 DUF2934: Protein of unknown function (DUF2934); InterPro: IPR021327 This bacterial family of proteins has no known function.
Probab=68.05 E-value=6.5 Score=32.63 Aligned_cols=35 Identities=40% Similarity=0.763 Sum_probs=26.1
Q ss_pred hhhHhhhhhhhhhccCCCCCChhhhhHHHHHHHHHHHH
Q 000821 138 KDLIELRAYQNWERRGRPNNSPQQQQKDYNDALKELQL 175 (1267)
Q Consensus 138 e~lv~~~a~~~We~~gkp~~~~~~~~~~~~~a~~~l~~ 175 (1267)
++.|..+||-.||+.|.|+-.++ +....|.++|..
T Consensus 5 e~~Ir~rAY~lwe~~G~p~G~~~---~~W~~AE~el~~ 39 (40)
T PF11154_consen 5 EERIRERAYELWEERGRPEGRDE---EDWLEAERELDA 39 (40)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcH---HHHHHHHHHHHc
Confidence 56788899999999999987663 445556655543
No 35
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]
Probab=62.68 E-value=3.6 Score=53.61 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=71.2
Q ss_pred chhhccccHHHHhhhhhHHHHHHHHhhHHHHHHHhcCCCcEEeeeeeEEEEEEEecccccccccccCCCeEEEEeCCCCc
Q 000821 776 KYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGE 855 (1267)
Q Consensus 776 ~~~v~~F~Ee~IR~s~~f~lS~l~~~l~p~lr~~a~~~~wqvlspG~a~G~L~~V~~l~~~~~~~~~~p~Ill~~~~~G~ 855 (1267)
+|.++- .+.++|+.+.-..+.+-...++ ...-..++. .+||.+.|.++++.+..+. ......+||+....+.
T Consensus 305 Ew~id~-~~~ilq~rP~t~~~~~~~~~~~---~~~~~~g~g-a~~g~~~G~v~~~~d~~e~--~~~~~g~iLv~~~t~p- 376 (740)
T COG0574 305 EWAIDG-KLYILQARPETVLSLLHPVEDR---GRALLKGIG-ASPGIASGRVKIILDVSEM--EKLEHGDILVTPMTDP- 376 (740)
T ss_pred hhhhcC-ceEEEEecCccccccccccccc---ccceeeeee-ccCCceeEEEEEEecHHHh--cccccCceEEeecCCH-
Confidence 455555 6667888887777776655555 111112222 8999999999888776554 2223467888875433
Q ss_pred cccCC--CcEEEEcCCCCCccchhhhhcccCCceeEEecc
Q 000821 856 EEIPV--GVVAVLTPDMPDVLSHVSIRARNNKVCFATCFD 893 (1267)
Q Consensus 856 EEIP~--~VaGVit~~~~~~LSHv~VRARn~gVp~at~~d 893 (1267)
+.+|. ...||+|.+-+ ..||-+|.||.+|+|-+.=-.
T Consensus 377 d~~~~m~~a~~Ivt~~Gg-~tshaaivaRe~g~Pavvg~~ 415 (740)
T COG0574 377 DWVPLMKVAGAIVTDRGG-MTSHAAIVARELGIPAVVGTG 415 (740)
T ss_pred HHhhhhhhccceEEcCCC-ccccchhhhhhcCCCeEEcCc
Confidence 33442 35577765554 999999999999999855433
No 36
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms]
Probab=62.25 E-value=5.1 Score=50.05 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=53.1
Q ss_pred ccccCCCeEEEEeCCCCcc--ccC-CCcEEEEcCCCCCccchhhhhcccCCceeEEe-cchHHHHHhhhcCCCeEEEEEc
Q 000821 838 NKVYRRPTIIIASRITGEE--EIP-VGVVAVLTPDMPDVLSHVSIRARNNKVCFATC-FDQNILRNLRLKEGKAVSIRLK 913 (1267)
Q Consensus 838 ~~~~~~p~Ill~~~~~G~E--EIP-~~VaGVit~~~~~~LSHv~VRARn~gVp~at~-~d~~~~~~l~~l~Gk~V~l~vs 913 (1267)
...+.++.|+|++..+-.| |.| ...+||++.+-. .-||+++.||.+|||.+-= -+- ..+..+|..+-+.--
T Consensus 323 ~~~~pe~aIlVarel~aa~L~e~Pr~rL~GvVl~dGa-anSH~aIvaRAmGIP~V~~a~~i----~~~~~n~~~~IVDG~ 397 (756)
T COG3605 323 ANAWPEDAILVARELGAAELLEYPRDRLRGVVLEDGA-ANSHAAIVARAMGIPTVMGAAGI----VPSVLNGDALIVDGY 397 (756)
T ss_pred hhcCCcceEEEecccCHHHHhhCchhhheeeeeecCc-ccchHHHHHHhcCCceeccccCc----chhhhcCCcEEEECC
Confidence 3456778899998654433 344 269999987754 7899999999999998654 331 123456766665544
Q ss_pred CCceEEee
Q 000821 914 STNLIISD 921 (1267)
Q Consensus 914 ~~~v~l~~ 921 (1267)
...+.+++
T Consensus 398 ~gev~l~P 405 (756)
T COG3605 398 RGEVHLRP 405 (756)
T ss_pred cceEEeCC
Confidence 55566655
No 37
>PF02786 CPSase_L_D2: Carbamoyl-phosphate synthase L chain, ATP binding domain; InterPro: IPR005479 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the ATP-binding domain found in the large subunit of carbamoyl phosphate synthase, as well as in related proteins.; GO: 0003824 catalytic activity, 0005524 ATP binding, 0008152 metabolic process; PDB: 3U9S_A 3U9T_A 2C00_B 2VQD_A 1W96_B 1W93_A 1M6V_C 1CS0_C 1C30_E 1C3O_G ....
Probab=39.93 E-value=49 Score=36.79 Aligned_cols=45 Identities=24% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCCccccchHHHHHHHHHHHHHHHhcC--CCeeEEEEEE--CCeEEEEeeccC
Q 000821 1217 PMVGDKSFQTSVFSKIAETGKIIESLYG--YPQDIEGVLK--DGLIYVVQARPQ 1266 (1267)
Q Consensus 1217 plLtD~~~r~~~l~rLa~la~~IE~~fG--~PQDIEwai~--~g~LyILQaRPq 1266 (1267)
+.|+++. .++|.+.+.+|-+.+| ++--|||+++ ++++|++...|-
T Consensus 131 ~~L~~~~-----~~~l~~~a~~ia~~l~~~G~~tvef~~~~~~~~~y~lEvNpR 179 (211)
T PF02786_consen 131 QTLSDEE-----RQKLREAAKKIARALGYVGAGTVEFAVDPDDGEFYFLEVNPR 179 (211)
T ss_dssp SSS-HHH-----HHHHHHHHHHHHHHTT-EEEEEEEEEEETTTTEEEEEEEESS
T ss_pred cccchHH-----HHHHHHHHHHHHHhhCeeecceEEEEEccCccceeeecccCC
Confidence 4577766 7899999999999888 6999999999 799999998774
No 38
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=34.42 E-value=1.3e+02 Score=34.42 Aligned_cols=87 Identities=20% Similarity=0.421 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHhhcC---------CCch---------hHHHH
Q 000821 466 DRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQ-RIRDEILVIQRNNG---------CKTG---------MMEEW 526 (1267)
Q Consensus 466 ~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq-~ird~il~i~~~n~---------~k~~---------~~e~w 526 (1267)
+|+...+...-.+.|+...+++.++.=- +.|+.-.|+ ++..-|=.+.-+.+ +.|+ ++++|
T Consensus 53 ~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~ 131 (260)
T PF04190_consen 53 ARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEW 131 (260)
T ss_dssp HHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHH
Confidence 6888888888888999999999888777 777777887 55544433332221 1222 67788
Q ss_pred HhhhcCCCCCChHHHHHHHHHHHHhCCChh
Q 000821 527 HQKLHNNTSPDDIIICEALLNYIRCGFKID 556 (1267)
Q Consensus 527 hqkLhnnttpddv~icea~l~~l~~~~~~~ 556 (1267)
-++ ...+-.|..|++|+|.||-.+ |+.
T Consensus 132 ~~~--~~~~e~dlfi~RaVL~yL~l~-n~~ 158 (260)
T PF04190_consen 132 STK--GYPSEADLFIARAVLQYLCLG-NLR 158 (260)
T ss_dssp HHH--TSS--HHHHHHHHHHHHHHTT-BHH
T ss_pred HHh--cCCcchhHHHHHHHHHHHHhc-CHH
Confidence 776 566667999999999999988 654
No 39
>COG5424 Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C [Coenzyme metabolism]
Probab=29.85 E-value=67 Score=36.54 Aligned_cols=25 Identities=24% Similarity=0.504 Sum_probs=22.8
Q ss_pred ChhhHHHHHhhC-CCCHHhhhcCCCCc
Q 000821 554 KIDAYWQTLNCH-GLSKQKLASYDRPI 579 (1267)
Q Consensus 554 ~~~~yw~~l~~~-g~t~e~l~s~~r~i 579 (1267)
|.-++|..+-+. |+|+|++.|++ |.
T Consensus 92 ~hidlwlr~aeAlGvs~eei~s~e-pl 117 (242)
T COG5424 92 NHIDLWLRLAEALGVSREEILSHE-PL 117 (242)
T ss_pred cHHHHHHHHHHHcCCCHHHHhhcC-CC
Confidence 667899999997 99999999999 76
No 40
>KOG3021 consensus Predicted kinase [General function prediction only]
Probab=26.37 E-value=51 Score=37.39 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHccCCccHHHHHHHHhhccCCCCCCCchhh
Q 000821 461 ISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRI 505 (1267)
Q Consensus 461 ~~~~q~~~t~~~~~~~~~~~~~r~~~r~~l~~~~rgg~g~~gq~i 505 (1267)
+++-|..|...||+.+..+-..++..|--..||||||+ .|.+|
T Consensus 95 lr~~~a~lG~qlAdmHl~n~kl~e~r~~~~~tv~rgge--~~e~~ 137 (313)
T KOG3021|consen 95 LRSDAAKLGSQLADMHLKNEKLAEARRTEAGTVGRGGE--EGEQI 137 (313)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHhccccccCcc--ccccc
Confidence 34567889999999999999999988888999999998 56554
No 41
>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length. The function of this family is unknown.
Probab=20.63 E-value=2.3e+02 Score=31.28 Aligned_cols=61 Identities=18% Similarity=0.350 Sum_probs=41.5
Q ss_pred hhHHHHHHHHhccccccCCCchhhHHHHHHHHhhccccCCCcHHHHHHHHHHhhhhccccCCchHHHHHHHHHHHHHH
Q 000821 670 LASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQ 747 (1267)
Q Consensus 670 le~~~r~~~er~~~~~~~~~~~~~~~~~~l~l~nl~Ls~~~n~el~~~l~~W~~~~~~~~~~~~~wAL~~kA~ldR~r 747 (1267)
-.+.+||+|...|-.++.+.|-++..+=+|. ++||.-.+... -..+.+|.-+|.+-+||.-
T Consensus 148 ~An~i~taiNt~YtE~giltPrKvIQlEGLL----------SRELfgkiaky-------VfNkYEWpesLD~EVdRI~ 208 (236)
T PF07067_consen 148 QANTIRTAINTCYTEIGILTPRKVIQLEGLL----------SRELFGKIAKY-------VFNKYEWPESLDSEVDRIY 208 (236)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHhHH----------HHHHHHHHHHH-------HhccccCchhhHhhhhhhe
Confidence 3466999999999999999998776666665 34552222111 1144678889999888873
Done!