Query 000822
Match_columns 1267
No_of_seqs 292 out of 332
Neff 5.3
Searched_HMMs 46136
Date Tue Apr 2 00:05:59 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000822.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000822hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0161 Myosin class II heavy 100.0 7E-76 1.5E-80 759.1 118.2 927 115-1168 835-1919(1930)
2 PF01576 Myosin_tail_1: Myosin 100.0 1.4E-66 3.1E-71 655.0 1.0 734 344-1165 3-858 (859)
3 KOG0161 Myosin class II heavy 100.0 3E-36 6.6E-41 392.0 124.4 812 303-1190 999-1917(1930)
4 PF01576 Myosin_tail_1: Myosin 100.0 1.9E-34 4.2E-39 364.4 0.7 707 374-1136 5-819 (859)
5 TIGR00606 rad50 rad50. This fa 99.9 2.7E-14 5.8E-19 190.1 105.6 820 313-1236 189-1093(1311)
6 TIGR00606 rad50 rad50. This fa 99.8 5.7E-11 1.2E-15 158.8 106.9 164 808-973 974-1144(1311)
7 KOG4674 Uncharacterized conser 99.8 5.8E-09 1.3E-13 137.2 130.2 192 95-314 57-256 (1822)
8 TIGR02168 SMC_prok_B chromosom 99.7 2.8E-09 6.1E-14 140.1 93.3 22 976-997 997-1018(1179)
9 KOG4674 Uncharacterized conser 99.7 1.9E-08 4.2E-13 132.5 136.7 64 1023-1100 1238-1301(1822)
10 TIGR02168 SMC_prok_B chromosom 99.7 6.4E-09 1.4E-13 136.8 91.1 7 22-28 27-33 (1179)
11 TIGR02169 SMC_prok_A chromosom 99.7 8.8E-09 1.9E-13 135.9 92.2 8 21-28 26-33 (1164)
12 TIGR02169 SMC_prok_A chromosom 99.7 6.2E-08 1.3E-12 128.0 95.9 18 1148-1165 1000-1017(1164)
13 COG1196 Smc Chromosome segrega 99.7 2.9E-08 6.3E-13 131.8 90.5 327 262-601 159-492 (1163)
14 PRK02224 chromosome segregatio 99.6 4.6E-09 9.9E-14 135.7 74.2 66 680-746 550-615 (880)
15 PF10174 Cast: RIM-binding pro 99.6 2.1E-07 4.5E-12 117.3 79.1 369 311-763 40-411 (775)
16 PRK02224 chromosome segregatio 99.5 1.7E-07 3.7E-12 121.3 77.6 6 79-84 81-86 (880)
17 COG1196 Smc Chromosome segrega 99.5 1.4E-06 3E-11 116.1 90.5 104 515-618 669-772 (1163)
18 PRK03918 chromosome segregatio 99.5 1E-06 2.2E-11 114.0 74.7 55 243-297 161-215 (880)
19 PRK03918 chromosome segregatio 99.4 7.3E-06 1.6E-10 106.3 73.9 11 76-86 81-91 (880)
20 PF10174 Cast: RIM-binding pro 99.3 3.9E-05 8.4E-10 97.3 86.0 55 832-886 664-718 (775)
21 KOG0996 Structural maintenance 99.0 0.00055 1.2E-08 87.7 79.9 207 689-929 779-990 (1293)
22 PF12128 DUF3584: Protein of u 99.0 0.00096 2.1E-08 89.8 73.0 241 253-501 290-541 (1201)
23 PRK01156 chromosome segregatio 98.9 0.001 2.2E-08 87.1 69.9 9 77-85 78-86 (895)
24 PF12128 DUF3584: Protein of u 98.7 0.0057 1.2E-07 82.6 78.7 97 711-813 623-719 (1201)
25 KOG0962 DNA repair protein RAD 98.7 0.0051 1.1E-07 80.9 93.4 123 312-438 187-313 (1294)
26 PRK01156 chromosome segregatio 98.7 0.005 1.1E-07 80.7 73.7 13 259-271 174-186 (895)
27 KOG0996 Structural maintenance 98.6 0.0081 1.7E-07 77.6 78.5 202 255-459 395-607 (1293)
28 PRK04863 mukB cell division pr 98.5 0.019 4.1E-07 78.4 91.8 223 706-948 989-1265(1486)
29 PRK04863 mukB cell division pr 98.4 0.031 6.7E-07 76.4 84.5 115 853-967 786-903 (1486)
30 PF05701 WEMBL: Weak chloropla 98.3 0.027 5.8E-07 70.0 57.8 47 298-344 36-82 (522)
31 PRK04778 septation ring format 98.2 0.045 9.8E-07 68.6 51.2 192 388-601 99-300 (569)
32 PF05701 WEMBL: Weak chloropla 98.2 0.043 9.3E-07 68.2 60.8 148 641-791 290-444 (522)
33 KOG0976 Rho/Rac1-interacting s 98.2 0.047 1E-06 68.1 51.9 86 322-414 83-168 (1265)
34 PF00261 Tropomyosin: Tropomyo 98.2 0.0012 2.6E-08 73.7 28.4 214 379-613 7-220 (237)
35 PF07888 CALCOCO1: Calcium bin 98.2 0.035 7.6E-07 68.3 42.5 142 322-480 190-331 (546)
36 KOG4673 Transcription factor T 98.2 0.048 1E-06 67.2 57.0 296 303-616 409-758 (961)
37 KOG0933 Structural maintenance 98.2 0.067 1.4E-06 68.6 64.5 320 373-703 694-1023(1174)
38 PRK04778 septation ring format 98.1 0.055 1.2E-06 67.9 43.4 127 303-434 105-232 (569)
39 PF00038 Filament: Intermediat 98.0 0.047 1E-06 63.0 37.4 105 497-601 2-114 (312)
40 KOG0977 Nuclear envelope prote 98.0 0.025 5.5E-07 69.5 35.8 234 333-579 94-334 (546)
41 PF05483 SCP-1: Synaptonemal c 98.0 0.12 2.7E-06 64.1 83.0 125 322-466 294-418 (786)
42 PF00038 Filament: Intermediat 97.9 0.1 2.2E-06 60.3 38.9 56 328-383 51-106 (312)
43 KOG0964 Structural maintenance 97.9 0.22 4.8E-06 63.9 71.2 172 255-433 304-499 (1200)
44 KOG0994 Extracellular matrix g 97.8 0.26 5.6E-06 63.9 56.0 117 279-406 1175-1293(1758)
45 PF07888 CALCOCO1: Calcium bin 97.8 0.19 4.2E-06 62.0 44.9 63 808-881 375-438 (546)
46 KOG0933 Structural maintenance 97.8 0.26 5.7E-06 63.5 80.5 201 348-571 179-387 (1174)
47 KOG0977 Nuclear envelope prote 97.8 0.073 1.6E-06 65.6 35.7 129 454-593 93-221 (546)
48 KOG0971 Microtubule-associated 97.7 0.41 8.9E-06 61.1 41.4 59 302-360 230-291 (1243)
49 KOG0250 DNA repair protein RAD 97.7 0.5 1.1E-05 61.9 66.4 113 480-592 353-466 (1074)
50 KOG4673 Transcription factor T 97.6 0.44 9.6E-06 59.2 61.8 309 446-792 339-657 (961)
51 PF14915 CCDC144C: CCDC144C pr 97.6 0.27 5.9E-06 56.3 36.8 228 672-927 4-246 (305)
52 PF05557 MAD: Mitotic checkpoi 97.5 0.00019 4.1E-09 91.8 9.1 66 86-154 57-122 (722)
53 KOG0994 Extracellular matrix g 97.5 0.76 1.6E-05 60.0 53.8 135 786-931 1511-1648(1758)
54 PF06160 EzrA: Septation ring 97.5 0.61 1.3E-05 58.7 51.1 205 715-927 298-528 (560)
55 KOG0612 Rho-associated, coiled 97.4 0.98 2.1E-05 59.7 42.8 156 385-561 492-650 (1317)
56 KOG4643 Uncharacterized coiled 97.4 0.89 1.9E-05 58.9 51.6 260 332-616 171-448 (1195)
57 PHA02562 46 endonuclease subun 97.4 0.055 1.2E-06 67.2 27.9 57 387-443 213-269 (562)
58 PF05557 MAD: Mitotic checkpoi 97.3 0.002 4.2E-08 82.7 14.4 71 523-593 353-423 (722)
59 KOG0978 E3 ubiquitin ligase in 97.3 1 2.2E-05 57.4 60.0 101 1022-1133 525-625 (698)
60 KOG1029 Endocytic adaptor prot 97.3 0.88 1.9E-05 57.4 35.1 145 463-607 353-503 (1118)
61 PRK11637 AmiB activator; Provi 97.3 0.14 2.9E-06 62.2 28.5 27 343-369 45-71 (428)
62 KOG0250 DNA repair protein RAD 97.2 1.4 3.1E-05 57.8 66.1 99 685-790 738-836 (1074)
63 PHA02562 46 endonuclease subun 97.2 0.22 4.7E-06 62.0 29.8 10 677-686 361-370 (562)
64 KOG0962 DNA repair protein RAD 97.1 2.3 4.9E-05 57.3 96.7 80 502-581 570-650 (1294)
65 PF15070 GOLGA2L5: Putative go 97.1 1.6 3.5E-05 55.4 46.1 177 812-995 238-444 (617)
66 COG0419 SbcC ATPase involved i 97.0 2.5 5.4E-05 56.2 73.5 19 250-268 177-195 (908)
67 KOG0964 Structural maintenance 97.0 2.2 4.7E-05 55.5 83.0 150 655-815 673-824 (1200)
68 PF07111 HCR: Alpha helical co 97.0 1.9 4.1E-05 54.5 69.7 172 458-633 138-321 (739)
69 COG1340 Uncharacterized archae 96.9 1.3 2.8E-05 51.2 36.0 79 336-414 18-96 (294)
70 PF06160 EzrA: Septation ring 96.9 2.3 4.9E-05 53.7 56.6 192 388-601 95-296 (560)
71 PRK11637 AmiB activator; Provi 96.8 0.59 1.3E-05 56.7 28.2 76 504-579 175-250 (428)
72 COG0419 SbcC ATPase involved i 96.8 3.5 7.6E-05 54.9 73.7 140 454-594 299-442 (908)
73 KOG0976 Rho/Rac1-interacting s 96.8 2.6 5.7E-05 53.5 66.0 189 670-890 333-524 (1265)
74 KOG0995 Centromere-associated 96.8 2.4 5.1E-05 52.6 39.6 109 310-422 259-367 (581)
75 PF09730 BicD: Microtubule-ass 96.8 3 6.4E-05 53.7 58.6 536 303-862 34-691 (717)
76 PF09726 Macoilin: Transmembra 96.7 1.2 2.7E-05 57.3 30.8 112 643-754 542-653 (697)
77 PF09728 Taxilin: Myosin-like 96.7 2.1 4.5E-05 50.2 38.3 95 650-744 213-307 (309)
78 PF05483 SCP-1: Synaptonemal c 96.6 3.3 7.1E-05 52.2 90.5 32 1104-1135 709-740 (786)
79 KOG4643 Uncharacterized coiled 96.6 4.2 9.2E-05 53.1 49.3 164 388-569 395-558 (1195)
80 PF12718 Tropomyosin_1: Tropom 96.6 0.2 4.4E-06 52.2 19.0 97 493-593 8-104 (143)
81 PF09726 Macoilin: Transmembra 96.4 1.1 2.3E-05 57.8 27.3 62 470-531 459-520 (697)
82 PF12718 Tropomyosin_1: Tropom 96.4 0.32 6.9E-06 50.8 18.7 96 502-601 3-98 (143)
83 PF15619 Lebercilin: Ciliary p 96.3 2.1 4.6E-05 47.0 25.5 176 510-698 9-188 (194)
84 PF05622 HOOK: HOOK protein; 96.3 0.002 4.4E-08 82.4 2.7 99 454-553 316-424 (713)
85 PF15070 GOLGA2L5: Putative go 96.2 6 0.00013 50.5 49.9 65 496-560 164-228 (617)
86 PF09728 Taxilin: Myosin-like 96.1 4 8.7E-05 47.9 38.0 130 327-476 46-179 (309)
87 PF05622 HOOK: HOOK protein; 96.1 0.0016 3.4E-08 83.4 0.0 68 280-351 351-418 (713)
88 PF15619 Lebercilin: Ciliary p 96.0 1.6 3.4E-05 48.0 22.7 66 373-438 12-77 (194)
89 KOG0946 ER-Golgi vesicle-tethe 96.0 4.9 0.00011 51.6 28.9 96 273-368 619-715 (970)
90 COG1340 Uncharacterized archae 95.9 4.6 0.0001 46.8 37.0 43 548-590 34-76 (294)
91 KOG1029 Endocytic adaptor prot 95.8 9 0.00019 49.0 34.3 32 503-534 321-352 (1118)
92 PF05667 DUF812: Protein of un 95.6 10 0.00022 48.4 32.8 82 520-601 447-530 (594)
93 COG1579 Zn-ribbon protein, pos 95.4 1.8 3.8E-05 49.0 20.3 121 313-438 20-140 (239)
94 KOG0018 Structural maintenance 95.3 15 0.00034 48.7 66.4 172 508-691 654-831 (1141)
95 KOG0612 Rho-associated, coiled 95.3 17 0.00037 48.9 65.6 82 778-868 699-784 (1317)
96 COG1579 Zn-ribbon protein, pos 94.9 5.1 0.00011 45.4 22.2 125 496-620 14-140 (239)
97 KOG0978 E3 ubiquitin ligase in 94.7 19 0.00041 46.4 64.0 71 816-889 553-623 (698)
98 PF09730 BicD: Microtubule-ass 94.6 21 0.00045 46.4 60.3 169 704-875 267-462 (717)
99 KOG1003 Actin filament-coating 94.5 9 0.00019 42.0 26.8 157 532-702 2-158 (205)
100 PF04849 HAP1_N: HAP1 N-termin 94.2 15 0.00032 43.1 24.3 203 516-749 86-302 (306)
101 TIGR03185 DNA_S_dndD DNA sulfu 94.0 26 0.00055 45.2 32.5 73 506-578 391-465 (650)
102 COG4942 Membrane-bound metallo 93.4 24 0.00053 43.0 29.5 61 376-436 48-108 (420)
103 PF09789 DUF2353: Uncharacteri 93.0 19 0.00041 42.5 22.8 151 449-601 64-221 (319)
104 PRK09039 hypothetical protein; 93.0 5.3 0.00012 47.5 18.7 41 483-523 65-105 (343)
105 PF05010 TACC: Transforming ac 92.9 19 0.0004 40.2 27.7 188 655-866 11-202 (207)
106 PF13514 AAA_27: AAA domain 92.8 52 0.0011 45.2 84.9 40 562-601 452-491 (1111)
107 PRK09039 hypothetical protein; 92.8 8.1 0.00018 46.0 19.9 23 477-499 73-95 (343)
108 PF05911 DUF869: Plant protein 92.8 43 0.00093 44.1 59.5 202 342-578 89-309 (769)
109 KOG0963 Transcription factor/C 92.6 37 0.0008 43.0 46.0 140 339-489 16-163 (629)
110 PF10473 CENP-F_leu_zip: Leuci 92.4 16 0.00035 38.4 20.3 95 650-744 14-108 (140)
111 COG4942 Membrane-bound metallo 92.1 36 0.00078 41.6 30.5 50 697-746 191-240 (420)
112 PF14662 CCDC155: Coiled-coil 92.0 22 0.00048 39.0 26.2 47 667-713 116-162 (193)
113 KOG0995 Centromere-associated 91.9 43 0.00093 42.1 43.4 51 704-754 427-477 (581)
114 PF14915 CCDC144C: CCDC144C pr 91.4 34 0.00073 40.0 33.8 245 322-601 29-296 (305)
115 KOG0946 ER-Golgi vesicle-tethe 91.4 57 0.0012 42.6 32.5 66 535-600 651-716 (970)
116 KOG1003 Actin filament-coating 91.1 28 0.0006 38.4 26.0 70 470-539 3-72 (205)
117 KOG4593 Mitotic checkpoint pro 90.9 59 0.0013 41.9 60.9 64 533-596 460-523 (716)
118 PF08614 ATG16: Autophagy prot 90.6 2.3 5.1E-05 46.3 11.5 112 490-601 72-183 (194)
119 PF07926 TPR_MLP1_2: TPR/MLP1/ 90.0 15 0.00033 37.8 16.1 82 1023-1115 5-86 (132)
120 COG4477 EzrA Negative regulato 89.9 62 0.0014 40.5 46.1 84 845-929 446-533 (570)
121 PF05667 DUF812: Protein of un 89.1 79 0.0017 40.6 35.3 49 663-711 487-535 (594)
122 PF06008 Laminin_I: Laminin Do 88.9 48 0.001 37.9 30.6 27 714-740 225-251 (264)
123 PF15450 DUF4631: Domain of un 88.6 75 0.0016 39.7 56.2 106 407-518 91-212 (531)
124 PF10473 CENP-F_leu_zip: Leuci 88.6 35 0.00076 35.9 18.9 75 518-592 29-103 (140)
125 COG3883 Uncharacterized protei 88.5 54 0.0012 37.9 28.2 32 559-590 63-94 (265)
126 PF08317 Spc7: Spc7 kinetochor 88.0 35 0.00076 40.3 19.4 147 316-471 148-294 (325)
127 KOG1937 Uncharacterized conser 86.2 94 0.002 38.2 30.9 169 426-601 245-428 (521)
128 COG1842 PspA Phage shock prote 86.1 61 0.0013 36.7 18.9 140 968-1122 41-186 (225)
129 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.7 46 0.001 34.3 18.7 33 767-799 93-125 (132)
130 KOG0963 Transcription factor/C 85.6 1.2E+02 0.0025 38.8 42.6 33 707-739 240-272 (629)
131 PF13851 GAS: Growth-arrest sp 85.3 66 0.0014 35.7 23.2 138 650-794 31-172 (201)
132 PF13851 GAS: Growth-arrest sp 84.8 69 0.0015 35.5 22.0 148 1020-1196 26-174 (201)
133 TIGR03007 pepcterm_ChnLen poly 84.4 1.2E+02 0.0025 37.7 24.0 22 518-539 166-187 (498)
134 PF12795 MscS_porin: Mechanose 84.3 78 0.0017 35.7 20.8 86 508-593 80-174 (240)
135 KOG0018 Structural maintenance 84.0 1.8E+02 0.0038 39.5 73.0 251 682-946 677-970 (1141)
136 PF05010 TACC: Transforming ac 83.9 79 0.0017 35.4 27.1 9 587-595 73-81 (207)
137 COG4372 Uncharacterized protei 83.8 1.1E+02 0.0024 37.0 28.2 87 388-474 82-168 (499)
138 PF08614 ATG16: Autophagy prot 83.4 8.2 0.00018 42.2 10.5 101 510-610 71-171 (194)
139 PF13514 AAA_27: AAA domain 83.4 2E+02 0.0044 39.7 91.3 82 87-174 147-228 (1111)
140 PF08317 Spc7: Spc7 kinetochor 82.8 1.1E+02 0.0024 36.2 29.3 25 555-579 75-99 (325)
141 TIGR03185 DNA_S_dndD DNA sulfu 82.7 1.6E+02 0.0035 38.1 36.7 14 960-973 504-517 (650)
142 TIGR01005 eps_transp_fam exopo 82.7 1.7E+02 0.0037 38.4 25.0 39 504-542 185-223 (754)
143 PF06705 SF-assemblin: SF-asse 82.5 94 0.002 35.3 29.5 182 746-932 7-198 (247)
144 PF07111 HCR: Alpha helical co 82.3 1.7E+02 0.0036 38.1 65.3 94 707-813 519-619 (739)
145 COG5185 HEC1 Protein involved 82.3 1.4E+02 0.003 37.1 37.6 209 255-494 268-496 (622)
146 KOG0804 Cytoplasmic Zn-finger 81.4 21 0.00046 43.5 13.4 88 990-1081 348-435 (493)
147 smart00787 Spc7 Spc7 kinetocho 81.2 59 0.0013 38.5 16.9 50 483-532 149-198 (312)
148 TIGR01843 type_I_hlyD type I s 80.0 1.4E+02 0.003 35.7 22.9 25 568-592 143-167 (423)
149 COG4026 Uncharacterized protei 79.9 35 0.00076 38.2 13.4 81 356-436 132-212 (290)
150 TIGR03007 pepcterm_ChnLen poly 79.0 1.2E+02 0.0027 37.5 19.8 25 419-443 158-182 (498)
151 PF06818 Fez1: Fez1; InterPro 77.4 1.3E+02 0.0027 33.7 20.0 183 323-523 9-201 (202)
152 PF09304 Cortex-I_coil: Cortex 77.3 60 0.0013 32.7 12.9 71 768-850 5-76 (107)
153 PF06008 Laminin_I: Laminin Do 76.8 1.4E+02 0.0031 34.0 30.5 73 668-740 186-258 (264)
154 PF04012 PspA_IM30: PspA/IM30 76.7 1.3E+02 0.0028 33.4 20.1 62 418-479 19-80 (221)
155 PF13870 DUF4201: Domain of un 76.6 1.1E+02 0.0025 32.8 20.6 152 301-475 18-174 (177)
156 PF04849 HAP1_N: HAP1 N-termin 76.2 1.7E+02 0.0037 34.6 27.0 81 678-758 210-290 (306)
157 PF10481 CENP-F_N: Cenp-F N-te 75.9 59 0.0013 37.6 14.0 94 476-569 16-109 (307)
158 KOG1853 LIS1-interacting prote 75.6 1.6E+02 0.0034 33.9 17.8 28 902-929 147-174 (333)
159 PRK10929 putative mechanosensi 75.4 3.4E+02 0.0074 37.6 40.2 33 694-726 382-414 (1109)
160 PF12325 TMF_TATA_bd: TATA ele 75.0 66 0.0014 33.0 13.1 27 454-480 69-95 (120)
161 PRK10246 exonuclease subunit S 74.3 3.5E+02 0.0076 37.3 81.5 50 756-805 754-803 (1047)
162 PRK11281 hypothetical protein; 73.7 3.7E+02 0.008 37.3 38.7 83 511-593 126-216 (1113)
163 COG1842 PspA Phage shock prote 73.3 1.7E+02 0.0037 33.2 23.1 190 305-501 19-220 (225)
164 PF10168 Nup88: Nuclear pore c 73.2 1.3E+02 0.0028 39.6 18.2 96 106-212 567-670 (717)
165 COG5185 HEC1 Protein involved 73.2 2.5E+02 0.0053 35.0 36.0 155 657-815 253-418 (622)
166 KOG4809 Rab6 GTPase-interactin 73.2 2.6E+02 0.0057 35.4 38.4 81 502-582 327-407 (654)
167 KOG0249 LAR-interacting protei 72.0 3.2E+02 0.0069 35.8 21.6 77 770-855 110-186 (916)
168 KOG0804 Cytoplasmic Zn-finger 71.6 1.1E+02 0.0025 37.6 15.8 72 478-549 339-411 (493)
169 PF10212 TTKRSYEDQ: Predicted 70.8 2.9E+02 0.0064 34.9 21.0 98 334-434 416-513 (518)
170 PRK10698 phage shock protein P 70.7 1.9E+02 0.0041 32.6 22.6 159 980-1164 53-217 (222)
171 TIGR00634 recN DNA repair prot 70.2 3.1E+02 0.0067 34.9 22.3 49 386-434 167-221 (563)
172 KOG1853 LIS1-interacting prote 69.7 2.1E+02 0.0046 32.9 18.7 30 902-931 245-276 (333)
173 KOG2129 Uncharacterized conser 69.7 2.7E+02 0.0059 34.1 23.4 65 1092-1156 250-314 (552)
174 PF00769 ERM: Ezrin/radixin/mo 69.3 1.6E+02 0.0034 33.8 15.9 31 832-862 12-42 (246)
175 PF12325 TMF_TATA_bd: TATA ele 67.0 1.6E+02 0.0034 30.3 14.6 88 322-413 21-108 (120)
176 PRK10929 putative mechanosensi 66.7 5.1E+02 0.011 36.0 41.2 30 516-545 105-134 (1109)
177 smart00787 Spc7 Spc7 kinetocho 65.9 2.9E+02 0.0062 32.9 28.6 58 682-739 205-262 (312)
178 PF10498 IFT57: Intra-flagella 64.8 1.9E+02 0.0042 35.0 16.1 129 773-916 217-349 (359)
179 COG4477 EzrA Negative regulato 63.3 4.1E+02 0.0089 33.8 43.6 85 302-386 103-187 (570)
180 PF15450 DUF4631: Domain of un 62.9 4.1E+02 0.0089 33.7 54.4 322 812-1190 146-499 (531)
181 PRK10246 exonuclease subunit S 62.4 5.8E+02 0.013 35.2 78.4 17 721-737 782-798 (1047)
182 PF10146 zf-C4H2: Zinc finger- 61.8 2.5E+02 0.0054 32.0 15.4 11 685-695 57-67 (230)
183 TIGR01005 eps_transp_fam exopo 61.3 5E+02 0.011 34.2 25.7 27 501-527 196-222 (754)
184 PF04582 Reo_sigmaC: Reovirus 60.9 16 0.00035 43.1 6.1 102 508-609 51-152 (326)
185 PF09789 DUF2353: Uncharacteri 60.4 3.6E+02 0.0079 32.2 24.2 44 641-684 135-178 (319)
186 PF10481 CENP-F_N: Cenp-F N-te 60.1 3.4E+02 0.0073 31.8 16.1 117 622-749 7-128 (307)
187 PF04582 Reo_sigmaC: Reovirus 59.8 14 0.0003 43.7 5.3 83 511-593 40-122 (326)
188 TIGR02977 phageshock_pspA phag 59.5 2.9E+02 0.0063 30.9 23.0 127 308-436 22-148 (219)
189 PF10146 zf-C4H2: Zinc finger- 59.3 2E+02 0.0044 32.7 14.2 35 381-415 54-88 (230)
190 PF04012 PspA_IM30: PspA/IM30 59.1 2.9E+02 0.0062 30.6 22.7 112 316-429 29-140 (221)
191 TIGR03017 EpsF chain length de 58.5 4.2E+02 0.009 32.3 21.6 21 1023-1043 173-193 (444)
192 PF12329 TMF_DNA_bd: TATA elem 57.0 1.5E+02 0.0032 27.9 10.6 27 566-592 37-63 (74)
193 PRK11281 hypothetical protein; 56.4 7.4E+02 0.016 34.6 42.5 28 905-932 124-151 (1113)
194 PF12795 MscS_porin: Mechanose 56.3 3.4E+02 0.0074 30.6 22.0 24 502-525 41-64 (240)
195 PRK10884 SH3 domain-containing 54.1 1.7E+02 0.0037 32.8 12.3 19 514-532 94-112 (206)
196 PF05266 DUF724: Protein of un 53.7 2.4E+02 0.0051 31.3 13.2 87 348-434 99-185 (190)
197 PF00769 ERM: Ezrin/radixin/mo 53.6 4E+02 0.0086 30.6 16.9 114 481-601 8-121 (246)
198 KOG4593 Mitotic checkpoint pro 52.2 6.8E+02 0.015 32.9 62.5 34 1102-1135 600-633 (716)
199 PF11559 ADIP: Afadin- and alp 52.1 3E+02 0.0065 28.8 15.4 70 529-598 47-116 (151)
200 PF04111 APG6: Autophagy prote 51.5 2.6E+02 0.0056 33.2 14.1 68 673-740 63-130 (314)
201 PF05266 DUF724: Protein of un 51.1 3.8E+02 0.0083 29.7 14.4 111 490-601 67-177 (190)
202 PF14197 Cep57_CLD_2: Centroso 51.0 99 0.0021 28.8 8.3 65 836-921 2-66 (69)
203 PF15294 Leu_zip: Leucine zipp 51.0 4E+02 0.0086 31.3 14.9 145 1085-1235 129-277 (278)
204 PF14073 Cep57_CLD: Centrosome 49.7 3.9E+02 0.0086 29.4 20.3 97 832-932 64-164 (178)
205 TIGR00634 recN DNA repair prot 49.7 6.7E+02 0.014 32.0 24.5 54 715-770 345-398 (563)
206 PF06818 Fez1: Fez1; InterPro 48.5 4.4E+02 0.0095 29.6 19.6 17 658-674 154-170 (202)
207 TIGR02977 phageshock_pspA phag 47.8 4.4E+02 0.0096 29.5 19.7 59 422-480 24-82 (219)
208 KOG0244 Kinesin-like protein [ 47.3 8.4E+02 0.018 33.1 18.5 290 835-1141 333-625 (913)
209 PF10498 IFT57: Intra-flagella 47.3 3.9E+02 0.0084 32.5 14.7 112 322-443 211-322 (359)
210 TIGR01000 bacteriocin_acc bact 47.1 6.5E+02 0.014 31.2 22.0 16 481-496 175-190 (457)
211 COG2433 Uncharacterized conser 46.7 2.8E+02 0.006 35.7 13.6 27 567-593 479-505 (652)
212 KOG1899 LAR transmembrane tyro 46.6 7.8E+02 0.017 32.0 19.7 142 329-480 123-265 (861)
213 PF04645 DUF603: Protein of un 46.3 4.1E+02 0.0089 29.1 13.0 54 490-552 73-130 (181)
214 PF14197 Cep57_CLD_2: Centroso 46.1 2E+02 0.0043 26.8 9.5 61 517-577 2-62 (69)
215 KOG0971 Microtubule-associated 45.9 9.3E+02 0.02 32.7 73.8 176 404-598 371-547 (1243)
216 PF09755 DUF2046: Uncharacteri 45.4 6E+02 0.013 30.3 36.4 116 677-795 152-284 (310)
217 KOG0999 Microtubule-associated 45.3 7.7E+02 0.017 31.6 63.5 126 476-601 48-174 (772)
218 KOG1850 Myosin-like coiled-coi 44.8 6.2E+02 0.013 30.3 36.0 113 650-762 219-331 (391)
219 KOG0249 LAR-interacting protei 44.3 9E+02 0.019 32.0 19.5 100 473-579 23-129 (916)
220 TIGR03017 EpsF chain length de 43.9 6.8E+02 0.015 30.5 25.7 34 509-542 167-200 (444)
221 COG4026 Uncharacterized protei 43.8 2.6E+02 0.0056 31.7 11.4 64 538-601 139-202 (290)
222 PF15066 CAGE1: Cancer-associa 43.6 7.6E+02 0.017 31.0 24.6 126 813-946 299-434 (527)
223 PF08826 DMPK_coil: DMPK coile 42.8 2.7E+02 0.0059 25.5 9.5 57 364-420 2-58 (61)
224 PF10234 Cluap1: Clusterin-ass 42.2 5.7E+02 0.012 29.9 14.5 98 1089-1232 163-260 (267)
225 PRK10698 phage shock protein P 42.0 5.6E+02 0.012 28.9 23.1 122 313-436 27-148 (222)
226 PLN02939 transferase, transfer 41.7 1.1E+03 0.024 32.4 29.2 185 650-844 254-454 (977)
227 PF06705 SF-assemblin: SF-asse 41.2 5.8E+02 0.013 28.9 31.8 138 772-929 5-148 (247)
228 PF15035 Rootletin: Ciliary ro 40.9 5.3E+02 0.011 28.4 16.5 103 336-438 7-111 (182)
229 PF00901 Orbi_VP5: Orbivirus o 40.3 8.7E+02 0.019 30.7 16.5 140 45-206 57-208 (508)
230 PF07106 TBPIP: Tat binding pr 39.3 1.8E+02 0.0039 31.0 9.5 16 426-441 149-164 (169)
231 KOG4809 Rab6 GTPase-interactin 39.1 9.5E+02 0.021 30.8 27.0 76 536-611 333-408 (654)
232 TIGR02338 gimC_beta prefoldin, 38.2 4.2E+02 0.0091 26.4 12.1 32 707-738 72-103 (110)
233 PF02403 Seryl_tRNA_N: Seryl-t 37.3 4.1E+02 0.0089 26.1 11.4 89 753-850 11-99 (108)
234 PF04102 SlyX: SlyX; InterPro 36.9 1.5E+02 0.0033 27.4 7.3 49 541-589 4-52 (69)
235 PRK04406 hypothetical protein; 36.4 2.3E+02 0.005 26.8 8.5 43 542-584 12-54 (75)
236 COG2433 Uncharacterized conser 35.1 4.9E+02 0.011 33.6 13.2 74 334-411 432-505 (652)
237 PF07889 DUF1664: Protein of u 34.8 3.4E+02 0.0074 28.3 10.1 79 280-358 41-123 (126)
238 PF06810 Phage_GP20: Phage min 34.5 2.5E+02 0.0053 30.1 9.4 47 1153-1199 39-85 (155)
239 PF04899 MbeD_MobD: MbeD/MobD 34.3 3.6E+02 0.0077 25.4 9.2 15 517-531 25-39 (70)
240 PF09755 DUF2046: Uncharacteri 34.2 8.8E+02 0.019 29.0 32.9 95 1031-1132 166-266 (310)
241 KOG4438 Centromere-associated 33.9 1E+03 0.022 29.6 36.0 57 705-763 336-392 (446)
242 PF09787 Golgin_A5: Golgin sub 33.9 1.1E+03 0.023 29.9 35.8 79 720-814 352-430 (511)
243 PRK10361 DNA recombination pro 33.4 1.1E+03 0.024 29.9 22.8 56 425-490 63-118 (475)
244 PF10267 Tmemb_cc2: Predicted 33.1 6.7E+02 0.015 30.9 13.8 43 484-526 225-271 (395)
245 PF08826 DMPK_coil: DMPK coile 33.1 3.9E+02 0.0084 24.5 9.8 41 561-601 17-57 (61)
246 TIGR03752 conj_TIGR03752 integ 32.8 2.3E+02 0.005 35.4 9.9 91 759-849 46-140 (472)
247 PF09787 Golgin_A5: Golgin sub 32.5 1.1E+03 0.025 29.7 32.0 41 565-605 388-428 (511)
248 KOG1937 Uncharacterized conser 31.8 1.1E+03 0.024 29.5 32.4 89 264-370 230-318 (521)
249 KOG1899 LAR transmembrane tyro 31.7 1.3E+03 0.028 30.2 20.3 36 650-685 221-256 (861)
250 COG3074 Uncharacterized protei 31.6 4.5E+02 0.0098 24.8 10.0 59 541-599 11-69 (79)
251 PF04949 Transcrip_act: Transc 31.4 6.9E+02 0.015 26.9 15.6 92 714-805 54-145 (159)
252 PF11559 ADIP: Afadin- and alp 30.6 6.4E+02 0.014 26.3 17.0 19 518-536 71-89 (151)
253 COG1382 GimC Prefoldin, chaper 30.1 5.1E+02 0.011 26.9 10.3 78 804-890 27-107 (119)
254 PRK02119 hypothetical protein; 28.7 3.3E+02 0.0072 25.6 8.1 14 566-579 34-47 (73)
255 PF11932 DUF3450: Protein of u 28.5 9.2E+02 0.02 27.4 16.4 12 566-577 81-92 (251)
256 PF07798 DUF1640: Protein of u 28.2 7.9E+02 0.017 26.6 16.0 108 1092-1202 48-157 (177)
257 PF06120 Phage_HK97_TLTM: Tail 28.2 1.1E+03 0.023 28.2 19.2 89 326-414 76-168 (301)
258 PF13870 DUF4201: Domain of un 27.8 7.9E+02 0.017 26.4 22.0 13 650-662 156-168 (177)
259 PRK04325 hypothetical protein; 27.7 3.4E+02 0.0073 25.6 8.0 43 543-585 11-53 (74)
260 PF10805 DUF2730: Protein of u 27.4 4.7E+02 0.01 26.2 9.5 23 566-588 69-91 (106)
261 TIGR01010 BexC_CtrB_KpsE polys 27.3 7.4E+02 0.016 29.5 13.0 19 483-501 175-193 (362)
262 PF10205 KLRAQ: Predicted coil 26.8 6.2E+02 0.013 25.6 9.9 63 546-608 3-65 (102)
263 PRK00295 hypothetical protein; 26.7 4E+02 0.0086 24.7 8.2 19 566-584 30-48 (68)
264 PF10267 Tmemb_cc2: Predicted 26.3 8.1E+02 0.018 30.3 13.0 49 1067-1119 245-293 (395)
265 PRK02793 phi X174 lysis protei 25.8 3.8E+02 0.0081 25.2 7.9 16 566-581 33-48 (72)
266 PF11570 E2R135: Coiled-coil r 25.6 8.1E+02 0.018 25.8 12.6 87 835-929 18-104 (136)
267 COG1382 GimC Prefoldin, chaper 25.5 7.7E+02 0.017 25.6 10.7 23 346-368 14-36 (119)
268 PF01920 Prefoldin_2: Prefoldi 25.4 6.1E+02 0.013 24.3 11.0 33 857-889 66-98 (106)
269 PF04912 Dynamitin: Dynamitin 25.4 1.3E+03 0.028 28.1 23.7 30 653-682 336-365 (388)
270 PF05377 FlaC_arch: Flagella a 25.4 2.2E+02 0.0047 25.7 5.9 39 98-136 1-39 (55)
271 PF10205 KLRAQ: Predicted coil 25.3 7.2E+02 0.016 25.2 11.0 67 352-418 5-71 (102)
272 PF04728 LPP: Lipoprotein leuc 25.0 4.8E+02 0.01 23.7 7.9 43 559-601 7-49 (56)
273 cd00632 Prefoldin_beta Prefold 25.0 6.7E+02 0.015 24.7 12.2 28 716-743 70-97 (105)
274 KOG4360 Uncharacterized coiled 25.0 1.5E+03 0.033 28.9 21.9 202 542-774 56-302 (596)
275 TIGR02338 gimC_beta prefoldin, 25.0 7E+02 0.015 24.9 11.9 26 563-588 75-100 (110)
276 PF06548 Kinesin-related: Kine 24.9 1.5E+03 0.032 28.6 22.1 180 912-1166 298-484 (488)
277 PF15397 DUF4618: Domain of un 24.9 1.2E+03 0.025 27.4 27.4 155 706-890 64-223 (258)
278 PF03915 AIP3: Actin interacti 24.4 1.5E+03 0.032 28.4 17.5 140 451-597 149-289 (424)
279 PRK00736 hypothetical protein; 24.4 4.2E+02 0.0092 24.6 7.9 28 558-585 22-49 (68)
280 PF08172 CASP_C: CASP C termin 24.3 9.7E+02 0.021 27.7 12.5 56 537-592 82-137 (248)
281 KOG1962 B-cell receptor-associ 24.2 4.3E+02 0.0093 30.0 9.3 83 93-175 126-211 (216)
282 KOG2991 Splicing regulator [RN 24.0 1.2E+03 0.026 27.2 23.5 132 467-601 89-235 (330)
283 PF03962 Mnd1: Mnd1 family; I 24.0 4.4E+02 0.0095 29.0 9.4 90 1166-1261 63-157 (188)
284 PF14712 Snapin_Pallidin: Snap 23.9 6.4E+02 0.014 24.0 11.0 77 518-595 12-90 (92)
285 PRK00846 hypothetical protein; 23.6 4.8E+02 0.01 25.1 8.2 42 546-587 18-59 (77)
286 PLN03188 kinesin-12 family pro 23.5 2.3E+03 0.05 30.4 28.9 72 901-972 1051-1131(1320)
287 cd00632 Prefoldin_beta Prefold 23.3 7.2E+02 0.016 24.5 12.0 18 518-535 11-28 (105)
288 PF05546 She9_MDM33: She9 / Md 23.2 1.1E+03 0.024 26.6 13.7 88 835-929 35-126 (207)
289 PF11180 DUF2968: Protein of u 22.7 1E+03 0.022 26.6 11.6 64 532-595 117-180 (192)
290 PRK11519 tyrosine kinase; Prov 22.6 1.7E+03 0.037 29.4 16.0 137 502-638 256-397 (719)
291 PF06810 Phage_GP20: Phage min 22.5 6.6E+02 0.014 26.9 10.1 31 511-541 18-48 (155)
292 KOG4603 TBP-1 interacting prot 22.3 6E+02 0.013 28.0 9.5 64 527-590 79-144 (201)
293 PRK09841 cryptic autophosphory 22.3 1.4E+03 0.031 30.1 15.2 40 503-542 257-296 (726)
294 PF05384 DegS: Sensor protein 22.0 1E+03 0.022 25.8 20.7 49 510-558 24-72 (159)
295 PRK09841 cryptic autophosphory 21.1 1.9E+03 0.041 29.0 16.0 10 518-527 316-325 (726)
296 TIGR02231 conserved hypothetic 20.9 6.1E+02 0.013 32.0 11.1 48 388-435 125-172 (525)
297 PF10805 DUF2730: Protein of u 20.6 6E+02 0.013 25.4 8.8 51 514-564 36-88 (106)
298 PF02403 Seryl_tRNA_N: Seryl-t 20.4 7.5E+02 0.016 24.2 9.5 20 516-535 39-58 (108)
299 PF05384 DegS: Sensor protein 20.4 1.1E+03 0.024 25.5 19.6 105 869-973 50-155 (159)
300 PF08647 BRE1: BRE1 E3 ubiquit 20.3 8.3E+02 0.018 24.0 12.4 73 343-415 8-80 (96)
301 PF12777 MT: Microtubule-bindi 20.1 1.5E+03 0.033 27.0 25.0 32 337-368 14-45 (344)
No 1
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=7e-76 Score=759.11 Aligned_cols=927 Identities=26% Similarity=0.350 Sum_probs=849.1
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhH-------HHHHHHHHHHH
Q 000822 115 NAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAE-------EAKRKELAEVK 187 (1267)
Q Consensus 115 ~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~~~e~~~L~~~lq~~-------ee~~~~L~~~k 187 (1267)
+.+++|.++++++..+++++.+.+...++++..+.++.. +++.|+.+|+++ ++++.++...+
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~-----------e~~~l~~~l~~e~~~~~~aee~~~~~~~~k 903 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLE-----------EKNDLQEQLQAEKENLAEAEELLERLRAEK 903 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999999999999999 999999999999 67777777766
Q ss_pred HH--------------hhhhhHHHHHHHHHHHHHHHHHHhcHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcch
Q 000822 188 EA--------------FDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSA 253 (1267)
Q Consensus 188 e~--------------lee~~~~l~~~kkk~qe~~~~L~~~~~~~~~~eel~~ee~~~a~~~~qK~lelEk~~~~~~~~a 253 (1267)
.. .++.+..+...++++++.|++|+..+++ .+++ ++| +++|+.
T Consensus 904 ~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~---------~E~~-----~~k-~~~Ek~-------- 960 (1930)
T KOG0161|consen 904 QELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEE---------LELT-----LQK-LELEKN-------- 960 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH-----HHH-HHHHHH--------
Confidence 22 2888999999999999999999999999 8888 999 999999
Q ss_pred HHHHHHHHhHHHHHhhhhHhhhhhHh----HHHHHHhhhhhhhHHHHH-hccch------hhHHHHHHHhhhHHHhhhhh
Q 000822 254 KEVEGQMASLQEELKGLNEKISEKEK----VEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQRFSSKEALITNL 322 (1267)
Q Consensus 254 ~~~e~~~~~l~ee~~~~~d~~~~~~k----~ee~~~~~~~~l~~~ee~-~~l~K------s~l~dLE~rl~~ee~lrKe~ 322 (1267)
++++++++|+++|.++++.++++.| +|+++.++.++|+.++++ ++|+| ++|+||+.+|.++.+ .
T Consensus 961 -~~e~~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~----~ 1035 (1930)
T KOG0161|consen 961 -AAENKLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKR----I 1035 (1930)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 9999999999999999999999999 999999999999999999 99999 999999999999999 6
Q ss_pred HHHHHHHHH----hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 323 TQELDLIKA----SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDK 398 (1267)
Q Consensus 323 ~~ELk~lK~----s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~ 398 (1267)
+.++++.++ .+..+++.+..+.....+|..++..++.++..++.+++++...+..+...|.++.+.+.++.++++.
T Consensus 1036 r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~ 1115 (1930)
T KOG0161|consen 1036 RMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEA 1115 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665555 7888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh---hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHH
Q 000822 399 VSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAAT 475 (1267)
Q Consensus 399 lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~---e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~ 475 (1267)
.+..+..+++.+.||...+..+ ..+|++.++++.. ..+|++. |+..+++++++.+..|++.+++
T Consensus 1116 er~~r~K~ek~r~dL~~ele~l---~~~Lee~~~~t~~q~e~~~k~e~----------e~~~l~~~leee~~~~e~~~~~ 1182 (1930)
T KOG0161|consen 1116 ERASRAKAERQRRDLSEELEEL---KEELEEQGGTTAAQLELNKKREA----------EVQKLRRDLEEETLDHEAQIEE 1182 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999555555 5555555555544 6799999 9999999999999999999999
Q ss_pred hccch----HHHHHHHHH---hhHHHHHHHHHH-----------hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000822 476 ASQRN----LELEDIIRA---SNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVR 537 (1267)
Q Consensus 476 ~~qk~----~EL~~qi~~---~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~ 537 (1267)
+|++| .+|.+|+++ .|+.+++.|+.+ ..+...+.+.+..++.++.++++++.+++++.+.+.
T Consensus 1183 lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~ 1262 (1930)
T KOG0161|consen 1183 LRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRN 1262 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 899999999 899999999998 667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-H
Q 000822 538 EFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-D 602 (1267)
Q Consensus 538 eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk--------------~LqsRireLEEele~L~EeLeE-~ 602 (1267)
++..+.+++..++..+.+.+++....++.+......+++++. .+...++.+..+++.+++++++ .
T Consensus 1263 ~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~ 1342 (1930)
T KOG0161|consen 1263 DLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALESQLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQ 1342 (1930)
T ss_pred HHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888 7788999999999999999999 7
Q ss_pred HHHhhhhhhhhHHHHHhHHhhhhhhhhhhhh-HHHHHHH------------------------HHHHHHHHH-HHH----
Q 000822 603 EDRANMSHQRSIELEDLFQTSHSKLEGTGKR-VNELELL------------------------LEAEKYRIQ-ELE---- 652 (1267)
Q Consensus 603 E~rak~~rqrs~eLeell~~~k~kLEeae~~-leelEe~------------------------LEk~K~Rlq-ELE---- 652 (1267)
+++.+..++.+....+ +..|+.++++.... ++++++. ++..+.+++ +++
T Consensus 1343 e~~~~l~r~lsk~~~e-~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~ 1421 (1930)
T KOG0161|consen 1343 EAKNELERKLSKANAE-LAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQL 1421 (1930)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 8888888887777766 77888777654433 3444442 666666644 222
Q ss_pred ------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---------------------H
Q 000822 653 ------EQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE---------------------R 705 (1267)
Q Consensus 653 ------eqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~---------------------r 705 (1267)
..++.++++++.|+..+++|+.....+..+++....+.+..++.+......+ .
T Consensus 1422 d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~ 1501 (1930)
T KOG0161|consen 1422 DLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIE 1501 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999999999999999999988888777443333332 2
Q ss_pred HHHHHHHHH-------HHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHH
Q 000822 706 ELTESLNAA-------ADEKRKLQDTSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEK 773 (1267)
Q Consensus 706 eL~eqleev-------ek~k~~LE~EieElkeqLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k 773 (1267)
++..+++++ +..++.++.++.+++.+|.++++.++ .+|.++++.+.+.+ ++++|+.+ +++++.+
T Consensus 1502 dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~le~eE~~~lr~~~~~~~~r~e-~er~l~ek---~Ee~E~~ 1577 (1930)
T KOG0161|consen 1502 DLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAALEAEEDKKLRLQLELQQLRSE-IERRLQEK---DEEIEEL 1577 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH-HHHHHHhh---hHHHHHH
Confidence 444454444 67789999999999999999999876 88999999999999 99999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000822 774 LKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAE 850 (1267)
Q Consensus 774 ~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~e 850 (1267)
+++|+++|++++++|+++++.++++. +.+||||+|+++ +++++|+..+++. +++++++.++++|++++++
T Consensus 1578 rk~~~~~i~~~q~~Le~E~r~k~e~~----r~KKkle~di~elE~~ld~ank~~~d~~---K~lkk~q~~~k~lq~~~e~ 1650 (1930)
T KOG0161|consen 1578 RKNLQRQLESLQAELEAETRSKSEAL----RSKKKLEGDINELEIQLDHANKANEDAQ---KQLKKLQAQLKELQRELED 1650 (1930)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH----hhhhhhhcchHHHHHHHHHHHHhhHHHH---HHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999 9999999999999 9999999999999999999
Q ss_pred HH--------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHH
Q 000822 851 AA--------------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQE 916 (1267)
Q Consensus 851 a~--------------rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe 916 (1267)
++ +++..+.++++++...+..+++.++.++.+++++.+.++.+++.|++++..+++|+++|..|++
T Consensus 1651 ~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~ 1730 (1930)
T KOG0161|consen 1651 AQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQS 1730 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHH
Confidence 77 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhhhHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhh
Q 000822 917 LLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIK 996 (1267)
Q Consensus 917 ~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~ 996 (1267)
.|+++.++.+.+.++.+++..++..+++.+ +.++.++++.+.+++ .|++++++|+.||+++|+.+.
T Consensus 1731 elee~~~~~~~~~Er~kka~~~a~~~~~el------------~~Eq~~~~~le~~k~--~LE~~~kdLq~rL~e~E~~a~ 1796 (1930)
T KOG0161|consen 1731 ELEEEQSELRAAEERAKKAQADAAKLAEEL------------RKEQETSQKLERLKK--SLERQVKDLQLRLDEAEQAAL 1796 (1930)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 999999999999998 999999999999999999887
Q ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhh
Q 000822 997 SYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATI 1076 (1267)
Q Consensus 997 ~~~~~~~~a~~~a~~~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~ 1076 (1267)
. ++++ .|.+||++|++|+.. ++.|.+..++++ |.++++|++|++|++|
T Consensus 1797 ~------------~~k~--------~i~~Learir~LE~~---l~~E~~~~~e~~----k~~rk~er~vkEl~~q----- 1844 (1930)
T KOG0161|consen 1797 K------------GGKK--------QIAKLEARIRELESE---LEGEQRRKAEAI----KGLRKKERRVKELQFQ----- 1844 (1930)
T ss_pred h------------ccHH--------HHHHHHHHHHHHHHH---HhHhhhhhHHHh----HHHHHHHHHHHHHHHH-----
Confidence 7 8888 899999999999999 888889999777 9999999999999999
Q ss_pred hhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 000822 1077 VEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSE 1156 (1267)
Q Consensus 1077 ~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e 1156 (1267)
++++. | +..++++++++++.+++.||||++++++.+++++.+||++||+|+++. +++|+|+++
T Consensus 1845 ~eed~--k----~~~~~q~~~dkl~~k~~~~krQleeaE~~~~~~~~k~R~~q~ele~a~-----------erad~~e~~ 1907 (1930)
T KOG0161|consen 1845 VEEDK--K----NIERLQDLVDKLQAKIKQYKRQLEEAEEEANQNLSKYRKLQRELEEAE-----------ERADTAESE 1907 (1930)
T ss_pred hhhhh--h----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH
Confidence 88888 7 999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHH
Q 000822 1157 IESLKAQAAEKF 1168 (1267)
Q Consensus 1157 ~~~lr~~~~~~~ 1168 (1267)
|++||++.+...
T Consensus 1908 ~~~lr~k~r~~~ 1919 (1930)
T KOG0161|consen 1908 LNKLRSKLRSTG 1919 (1930)
T ss_pred HHHHHHHHHhcc
Confidence 999999988643
No 2
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=100.00 E-value=1.4e-66 Score=654.97 Aligned_cols=734 Identities=26% Similarity=0.358 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhh
Q 000822 344 DNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKEL 423 (1267)
Q Consensus 344 e~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~ 423 (1267)
.+...+|...|.+++++|..+..++++++..+..+.+.|.++.++|.++..+|+..+..+.++++.+.||. .+|.++
T Consensus 3 ~~~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~---~ELe~l 79 (859)
T PF01576_consen 3 ERQKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEELESERQARAKAEKQRRDLS---EELEEL 79 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999 777777
Q ss_pred hHHHHHHHhhhhh---hhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch----HHHHHHHHH---hhHH
Q 000822 424 CSELEEKLRNSDE---NFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN----LELEDIIRA---SNEA 493 (1267)
Q Consensus 424 ~eeLEeeL~~~~~---e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~----~EL~~qi~~---~~~~ 493 (1267)
.+.|++..+.+.+ ..+|||+ ||..++|.|++.+..|+++++.+|+|| .+|.+||++ .+++
T Consensus 80 ~~~Lee~~~~t~aq~E~~kkrE~----------El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~ 149 (859)
T PF01576_consen 80 KERLEEAGGATQAQIELNKKREA----------ELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAK 149 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhhCcHHhhHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777 6699999 999999999999999999999999999 999999999 9999
Q ss_pred HHHHHHHH-----------hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 494 AEEAKSQL-----------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD 562 (1267)
Q Consensus 494 ~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~ 562 (1267)
+|+.|+.| +.+...+.++++.++.++.++.+++.++++..+.++++.....++..++..+...+.....
T Consensus 150 lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~ 229 (859)
T PF01576_consen 150 LEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAES 229 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 8889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHhHHHHHHHHHHHHHHHHHhh-HHHHhhhhhhhhHHHHHhHHhhhhhh
Q 000822 563 QMNDYKDKITQLELILN--------------QSNTRSSELEEELRITKERSAE-DEDRANMSHQRSIELEDLFQTSHSKL 627 (1267)
Q Consensus 563 kleelqkkIs~LEsqLk--------------~LqsRireLEEele~L~EeLeE-~E~rak~~rqrs~eLeell~~~k~kL 627 (1267)
.+..+......|..++. .+...++.++.+++.+++++++ ..++....++.+....+ +..|+.++
T Consensus 230 ~~~~l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~E-l~~~k~K~ 308 (859)
T PF01576_consen 230 QLSQLQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAE-LEQWKKKY 308 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhH-HHHHHHHH
Confidence 99999999999888887 7788999999999999999998 66777777776665555 88899777
Q ss_pred hhhh-hhHHHHHHH------------------------HHHHHHHHH-HHH----------HHHHHHHHHHHHHHHhhHH
Q 000822 628 EGTG-KRVNELELL------------------------LEAEKYRIQ-ELE----------EQISKLEKKCEEAEAGSKQ 671 (1267)
Q Consensus 628 Eeae-~~leelEe~------------------------LEk~K~Rlq-ELE----------eqis~LEKK~k~~eqeLae 671 (1267)
+... ..+..+++. +++.+.++. +++ ..+..++|++..|++.+++
T Consensus 309 e~e~~~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e 388 (859)
T PF01576_consen 309 EEEAEQRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAE 388 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 7533 324455442 555555555 333 6777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---------------------HHHHHHHHHH-------HHHHHHHHHH
Q 000822 672 YSDKVCELASELEAFQARTSSLEVALQMANDK---------------------ERELTESLNA-------AADEKRKLQD 723 (1267)
Q Consensus 672 ~~e~l~~Lk~ELE~lekE~relEt~Lee~rek---------------------~reL~eqlee-------vek~k~~LE~ 723 (1267)
|...+..+..+++.+..+++.+.+.+..+... +.+++.++++ +.+.++.|+.
T Consensus 389 ~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~ 468 (859)
T PF01576_consen 389 WKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQ 468 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHH
Confidence 99999999999999999999999844443333 2255555555 3789999999
Q ss_pred HhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000822 724 TSNGYNEKLAEAENLLE-----LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSEL 798 (1267)
Q Consensus 724 EieElkeqLeElE~~Le-----~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~ 798 (1267)
++.+++.+|.++++.+. .+|+++++.+.+.+ |+++|+.+ +++|++.|++++++|++|+++||.+++.|+.+
T Consensus 469 e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e-~er~l~eK---eeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~ 544 (859)
T PF01576_consen 469 EKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQE-IERELQEK---EEEFEETRRNHQRQLESLEAELEEERKERAEA 544 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhh---hhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999987 89999999999999 99999999 99999999999999999999999999999999
Q ss_pred hHhHHHhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHH--------------hHHHHHHHH
Q 000822 799 ESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA--------------GKYALLKEE 861 (1267)
Q Consensus 799 ~~~~e~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~--------------rk~~~l~~E 861 (1267)
+ +.+||||+++.+ +++++|+...++. +.+++++.+|++|+..+++++ +++..++.+
T Consensus 545 ~----r~kkKLE~~l~eLe~~ld~~n~~~~e~~---k~~kk~q~qlkdlq~~lee~~~~~~~~~~~~~~~e~r~~~l~~e 617 (859)
T PF01576_consen 545 L----REKKKLESDLNELEIQLDHANRANEEAQ---KQLKKLQAQLKDLQRELEEAQRAREELREQLAVSERRLRALQAE 617 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----HHHHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 999999999998 9999999999999 999999999999999999977 677899999
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Q 000822 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTE 941 (1267)
Q Consensus 862 le~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~e 941 (1267)
++++...+..+++.++.++.+++++...++...+.++.++..+++|+++|.+|+..|+++..+.+.+.++++++..++..
T Consensus 618 lee~~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~ 697 (859)
T PF01576_consen 618 LEELREALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQ 697 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhhhhHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHH
Q 000822 942 LTEQHSRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLL 1021 (1267)
Q Consensus 942 L~e~~~r~~~l~s~~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~~~~~~~~~a~~~a~~~k~e~e~~l~ 1021 (1267)
|++++ ..++.+++..+..++ .|+.++++|+.|+.++|+.+.. ++++
T Consensus 698 l~~eL------------~~Eq~~~~~le~~k~--~LE~q~keLq~rl~e~E~~~~~------------~~k~-------- 743 (859)
T PF01576_consen 698 LAEEL------------RQEQDHNQHLEKEKK--ALERQVKELQARLEEAEQSALK------------GGKK-------- 743 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHH------------HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhc------------cccc--------
Confidence 99999 999999999999998 9999999999999999998877 7777
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHH
Q 000822 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1267)
Q Consensus 1022 ~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~ 1101 (1267)
.|..||++|.+|+.+ |+.|.+.++.++ +.++++++||+||.++ +++++ + +..+++|++++++
T Consensus 744 ~i~kLE~ri~eLE~~---Le~E~r~~~~~~----k~~rk~er~~kEl~~q-----~ee~~--k----~~~~~~d~~~kl~ 805 (859)
T PF01576_consen 744 QIAKLEARIRELEEE---LESEQRRRAEAQ----KQLRKLERRVKELQFQ-----VEEER--K----NAERLQDLVDKLQ 805 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHH---HHHHHHHHHHHH----HHHHHHHhhHHHHHHH-----HHhHH--H----HHHHHHHHHHHHH
Confidence 799999999999999 888889999888 9999999999999999 77777 6 8899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Q 000822 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAA 1165 (1267)
Q Consensus 1102 ~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~ 1165 (1267)
.+++.|||||+++++++++++++||++||+|+++. ++++++.++|++||++++
T Consensus 806 ~k~k~~krq~eeaEe~~~~~~~k~Rk~q~elee~~-----------e~~~~~e~~l~~lr~~~r 858 (859)
T PF01576_consen 806 LKLKQLKRQLEEAEEEASRNLAKYRKLQRELEEAE-----------ERAEAAERELNKLRAKSR 858 (859)
T ss_dssp -------------------------SSSSHHHHHT-----------CCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999 999999999999999875
No 3
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=3e-36 Score=392.03 Aligned_cols=812 Identities=22% Similarity=0.284 Sum_probs=549.1
Q ss_pred hhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1267)
Q Consensus 303 s~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL 382 (1267)
+.|...+.++.+..+++-.+.++|..+...++.-+.-...+++... +++.++..+...+.+....+..+...+
T Consensus 999 ~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r-------kle~el~~~~e~~~~~~~~~~el~~~l 1071 (1930)
T KOG0161|consen 999 DDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR-------KLEGELKDLQESIEELKKQKEELDNQL 1071 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5566666666666665555555555555555444444444444444 444455555555555556667777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcH
Q 000822 383 KTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSL 462 (1267)
Q Consensus 383 ~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~l 462 (1267)
.....++..+...++........+.+.|.+|.+.|.++.+.++.-.....+....++.-.. +|+.+...|
T Consensus 1072 ~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~----------ele~l~~~L 1141 (1930)
T KOG0161|consen 1072 KKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSE----------ELEELKEEL 1141 (1930)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
Confidence 7888888888888888888888888888888888888888777777777777666666666 888888888
Q ss_pred HHHhhhhHHHHHHhccch--------------HHHHHHHHHhhHHHHH----HHHHHhhHhhhHHHHHHHHHHHHHHHHH
Q 000822 463 EEQHNETGAAAATASQRN--------------LELEDIIRASNEAAEE----AKSQLRELEPRFIAAEQRSVELEQQLNL 524 (1267)
Q Consensus 463 ee~~~~he~~~~~~~qk~--------------~EL~~qi~~~~~~~Ek----~k~~l~~l~~~~~~~Ekk~keLE~QL~e 524 (1267)
++.....-+.+....++- ...+.++..++....+ .-.++..+...+..+.+....++..+..
T Consensus 1142 ee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~~~k~~lekek~~lq~e~~~ 1221 (1930)
T KOG0161|consen 1142 EEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQKDKAKLEKEKSDLQREIAD 1221 (1930)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888665555555444333 2233333333322222 2223344444444444444444444444
Q ss_pred HHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------H
Q 000822 525 VELKS-------SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE-------E 590 (1267)
Q Consensus 525 Lq~K~-------~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLE-------E 590 (1267)
+...+ .++++-...++.+++.++..+......+..+..+.......+..+.+.+......+..+. .
T Consensus 1222 l~~ev~~~~~~k~~~e~~~k~~E~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~~~l~~~lee~e~~~~~~~r~~~~~~~ 1301 (1930)
T KOG0161|consen 1222 LAAELEQLSSEKKDLEKKDKKLEAQLSELQLKLDEQERLRNDLTAKRSRLQNENEELSRQLEEAEAKLSALSRDKQALES 1301 (1930)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhHhHHHHHHHHHHHHHHHHHHH
Confidence 44333 344444444555566666666666665544444444444444444444443333333333 3
Q ss_pred HHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHH-------------------------HHHHH
Q 000822 591 ELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELL-------------------------LEAEK 645 (1267)
Q Consensus 591 ele~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~-------------------------LEk~K 645 (1267)
.+..++.++.+...........+..++..+..++..+++.......+.-. ++..+
T Consensus 1302 qle~~k~qle~e~r~k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~k 1381 (1930)
T KOG0161|consen 1302 QLEELKRQLEEETREKSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELK 1381 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333111111111122222222333334444333322222211 22222
Q ss_pred HHHH----HHHHHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 646 YRIQ----ELEEQIS-------KLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA 714 (1267)
Q Consensus 646 ~Rlq----ELEeqis-------~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleev 714 (1267)
.++. +++..+- .+++-...+.+++.....++.+...-...+....+..+..+........++...++..
T Consensus 1382 k~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~a 1461 (1930)
T KOG0161|consen 1382 KKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAA 1461 (1930)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2211 2222222 2222223333333333333333333344444555555556666666666777777777
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH-----
Q 000822 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLE----- 789 (1267)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE----- 789 (1267)
....+.+...+-.+...++++-..++.++.+-..++..+..+...+...|-+-.+++.-++.++.++.+++..|+
T Consensus 1462 q~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLeElE~~ 1541 (1930)
T KOG0161|consen 1462 QRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALEELEAA 1541 (1930)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777776666666666666666666655555555556556666555555554443
Q ss_pred --HHhhhhhhhhHhHHHhhHhhHHHHH--------------HHHHhhh-cchhHhhhHHHHH---HHHHHHHHHHHHHHH
Q 000822 790 --QATSRNSELESLHESLMRESEMKLQ--------------DALANIT-SRDSEAKSFSEKL---KNLEGQVKMYEEQLA 849 (1267)
Q Consensus 790 --~e~~~~~e~~~~~e~~~kk~E~~Lq--------------eale~~~-~~~sEa~~l~e~L---KKLE~qikele~ql~ 849 (1267)
++-+.+.-+.--+..++.+.+.+|+ .+|++++ .+++|++++++.+ |||+|||++++.+++
T Consensus 1542 le~eE~~~lr~~~~~~~~r~e~er~l~ek~Ee~E~~rk~~~~~i~~~q~~Le~E~r~k~e~~r~KKkle~di~elE~~ld 1621 (1930)
T KOG0161|consen 1542 LEAEEDKKLRLQLELQQLRSEIERRLQEKDEEIEELRKNLQRQLESLQAELEAETRSKSEALRSKKKLEGDINELEIQLD 1621 (1930)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 3333332232224455555554444 4889899 9999999999999 889999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000822 850 EAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLV-ETNNQLKSKVAELQELLDSAISEKEAT 928 (1267)
Q Consensus 850 ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~-~~~~~Lesei~eLqe~Le~a~~ere~a 928 (1267)
+|++.+..+.+.+ +.++.++++++.+++++.... ..+..+...+ +++..|.+++.+|...++++.++++.+
T Consensus 1622 ~ank~~~d~~K~l-------kk~q~~~k~lq~~~e~~~~~~-~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~a 1693 (1930)
T KOG0161|consen 1622 HANKANEDAQKQL-------KKLQAQLKELQRELEDAQRAR-EELLEQLAEAERRLAALQAELEELREKLEALERARRQA 1693 (1930)
T ss_pred HHHHhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999 999999999999999999888 6666677766 999999999999999999999999999
Q ss_pred HHHHhhcccchhHHHHHHHHhhhhhhh----------hHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhhhH
Q 000822 929 GQQLASHMNTVTELTEQHSRALELHSA----------TEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSY 998 (1267)
Q Consensus 929 ee~l~~~~~~~~eL~e~~~r~~~l~s~----------~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~~~ 998 (1267)
+ .++.+..++++.++++ +|+++.++++++++.++ +++.+.+|.+
T Consensus 1694 E----------~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~-------~~~~~~Er~k--------- 1747 (1930)
T KOG0161|consen 1694 E----------LELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQS-------ELRAAEERAK--------- 1747 (1930)
T ss_pred H----------HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHH---------
Confidence 9 8999999999998877 99999999999999999 8999999999
Q ss_pred HHHHHHHHHHHhhhhHHHHH--HHHH-HHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHh
Q 000822 999 EEQAREASTVAETRKFELEE--TLLK-LKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSAT 1075 (1267)
Q Consensus 999 ~~~~~~a~~~a~~~k~e~e~--~l~~-~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~ 1075 (1267)
+++++|++|++.+..|+++ |+++ ++.||..+++|+.+++++|. .++. ||++.|+++|.||++|+.+|+++
T Consensus 1748 -ka~~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~e~E~--~a~~----~~k~~i~~Learir~LE~~l~~E 1820 (1930)
T KOG0161|consen 1748 -KAQADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLDEAEQ--AALK----GGKKQIAKLEARIRELESELEGE 1820 (1930)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhh----ccHHHHHHHHHHHHHHHHHHhHh
Confidence 9999999999999999999 9999 99999999999999999999 7777 99999999999999999999999
Q ss_pred hhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 000822 1076 IVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKS 1155 (1267)
Q Consensus 1076 ~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~ 1155 (1267)
.+++.++.|++|+.+++++++.+|+...-+.+ +-+-+-...++++....++-|+++. ..+.+
T Consensus 1821 ~~~~~e~~k~~rk~er~vkEl~~q~eed~k~~----~~~q~~~dkl~~k~~~~krQleeaE--------------~~~~~ 1882 (1930)
T KOG0161|consen 1821 QRRKAEAIKGLRKKERRVKELQFQVEEDKKNI----ERLQDLVDKLQAKIKQYKRQLEEAE--------------EEANQ 1882 (1930)
T ss_pred hhhhHHHhHHHHHHHHHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHHhHHHHH--------------HHHHH
Confidence 99999999999999999999999976554444 3355666778888888899888877 55667
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000822 1156 EIESLKAQAAEKFALETRIKELEELLVNVETQFKE 1190 (1267)
Q Consensus 1156 e~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1190 (1267)
...++|.--++-....-|.+.+|..+..-.+++-.
T Consensus 1883 ~~~k~R~~q~ele~a~erad~~e~~~~~lr~k~r~ 1917 (1930)
T KOG0161|consen 1883 NLSKYRKLQRELEEAEERADTAESELNKLRSKLRS 1917 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888888888888888776666543
No 4
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=99.98 E-value=1.9e-34 Score=364.40 Aligned_cols=707 Identities=23% Similarity=0.317 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhh-hhhhhhhhhhhhhhhch
Q 000822 374 ARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD-ENFCKTDSLLSQALANN 452 (1267)
Q Consensus 374 ~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~-~e~~K~e~~lsq~~~~~ 452 (1267)
.+..+...|......|..+...++.....+..+.+.|.+|.+.|.+|.+. |+..=..-. .+..+++- .
T Consensus 5 ~~~~l~~~l~kke~El~~~~~~~e~e~~~~~~l~k~~kelq~~i~el~ee---Le~Er~~R~kaek~r~dL--------~ 73 (859)
T PF01576_consen 5 QKEELEEQLKKKEEELSQLNSKLEDEQALRAQLQKKIKELQARIEELEEE---LESERQARAKAEKQRRDL--------S 73 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--------H
Confidence 34556666777778888888888888888888888888888666555444 333322222 24444444 5
Q ss_pred HHHHHHHhcHHHHhhhhHHHHHHhccchHHHHH--------------HHHHhhH----HHHHHHHHHhhHhhhHHHHHHH
Q 000822 453 AELELKLKSLEEQHNETGAAAATASQRNLELED--------------IIRASNE----AAEEAKSQLRELEPRFIAAEQR 514 (1267)
Q Consensus 453 ~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~--------------qi~~~~~----~~Ek~k~~l~~l~~~~~~~Ekk 514 (1267)
.||+.+.-.|++.+..+-+++...++|-.||.. .|..++. .+.....++..+...+..+++.
T Consensus 74 ~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~ 153 (859)
T PF01576_consen 74 EELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEATLAELRKKHQDAVAELNEQLEQLQKQKAKLEKE 153 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999998888888887744322 2222222 2244455556666666666655
Q ss_pred HHHHHHHHHHHHHhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000822 515 SVELEQQLNLVELKS-------SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1267)
Q Consensus 515 ~keLE~QL~eLq~K~-------~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRire 587 (1267)
...|+..+..+...+ ..+++.+..+...+..++..+...++.++.+......+...+..|..++......+..
T Consensus 154 k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~ 233 (859)
T PF01576_consen 154 KSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQ 233 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444 4455555555666666666666666666666666666666666666666655555555
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhh-------HHHHHhHHhhhhhhhhhhhhHHHHHHH--------------------
Q 000822 588 LEEELRITKERSAEDEDRANMSHQRS-------IELEDLFQTSHSKLEGTGKRVNELELL-------------------- 640 (1267)
Q Consensus 588 LEEele~L~EeLeE~E~rak~~rqrs-------~eLeell~~~k~kLEeae~~leelEe~-------------------- 640 (1267)
+......+..++.+....+....... ..+...+..++..+++-......+...
T Consensus 234 l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~ 313 (859)
T PF01576_consen 234 LQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAE 313 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 55544444444444333333222222 222222222223333211111111110
Q ss_pred -----HHHHHHHHH----HHHH-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 000822 641 -----LEAEKYRIQ----ELEE-------QISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE 704 (1267)
Q Consensus 641 -----LEk~K~Rlq----ELEe-------qis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~ 704 (1267)
++..+.++. ++.. .+..+++....+..++..+...+.+.......+.+..+.+...+.......
T Consensus 314 ~~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~ 393 (859)
T PF01576_consen 314 QRTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKV 393 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 111111111 1222 222222222222222222222222222222233344444444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH----
Q 000822 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQ---- 780 (1267)
Q Consensus 705 reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~q---- 780 (1267)
..+....+.+....+.+..++-.++..++++...+..+..+...++..+..+-+.+...|-.-.+++-.++.++..
T Consensus 394 ~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 394 EELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHH
Confidence 5666666677777777777777777777777777776666555555555544433333332233334344444444
Q ss_pred ---HHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHH--------------HHHHHhhh-cchhHhhhHHHHH---HHHHH
Q 000822 781 ---LEQQTRVLEQATSRNSELESLHESLMRESEMKL--------------QDALANIT-SRDSEAKSFSEKL---KNLEG 839 (1267)
Q Consensus 781 ---l~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~L--------------qeale~~~-~~~sEa~~l~e~L---KKLE~ 839 (1267)
|++++..|...-..+.-+..-.+.++..++-+| +++|++++ .++.|.++++..+ |||++
T Consensus 474 ~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~ 553 (859)
T PF01576_consen 474 QEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQLESLEAELEEERKERAEALREKKKLES 553 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444443333333333456666665544 44999999 9999999998877 89999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHH-HHHHHhHHHHHHHHHHH
Q 000822 840 QVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLV-ETNNQLKSKVAELQELL 918 (1267)
Q Consensus 840 qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~-~~~~~Lesei~eLqe~L 918 (1267)
+|++++++++++++....+.+.+ +.++.++++++..++++.... +.+..++..+ ++.+.|.+++.+++..+
T Consensus 554 ~l~eLe~~ld~~n~~~~e~~k~~-------kk~q~qlkdlq~~lee~~~~~-~~~~~~~~~~e~r~~~l~~elee~~~~~ 625 (859)
T PF01576_consen 554 DLNELEIQLDHANRANEEAQKQL-------KKLQAQLKDLQRELEEAQRAR-EELREQLAVSERRLRALQAELEELREAL 625 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHhHHHHHHHH-------HHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 999999999999999999988 7777777777 88999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhh----------hHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhH
Q 000822 919 DSAISEKEATGQQLASHMNTVTELTEQHSRALELHSA----------TEARVKEAEIQLHEAIQRFTQRDIEANNLNEKV 988 (1267)
Q Consensus 919 e~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~----------~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl 988 (1267)
+.+.+.++.++ .++.+..+++++++++ +|+++..++++++|... .++.+.+|+
T Consensus 626 ~~a~r~rk~aE----------~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~-------~~~~~~ek~ 688 (859)
T PF01576_consen 626 EQAERARKQAE----------SELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQS-------EAEAAEEKA 688 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHH----------HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Confidence 99999999999 8888989888888877 99999999999999999 899999999
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhhHHHHH--HHHH-HHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhh
Q 000822 989 SVLEGQIKSYEEQAREASTVAETRKFELEE--TLLK-LKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKL 1065 (1267)
Q Consensus 989 ~~~E~~~~~~~~~~~~a~~~a~~~k~e~e~--~l~~-~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~kl 1065 (1267)
+ +++++|+.|+..+..|+++ ++++ +++||.+|++|+.+|+++|+ .++. ||++.|+++|.||
T Consensus 689 k----------ka~~~~~~l~~eL~~Eq~~~~~le~~k~~LE~q~keLq~rl~e~E~--~~~~----~~k~~i~kLE~ri 752 (859)
T PF01576_consen 689 K----------KAQAQAAQLAEELRQEQDHNQHLEKEKKALERQVKELQARLEEAEQ--SALK----GGKKQIAKLEARI 752 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred H----------HhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhc----ccccHHHHHhHHH
Confidence 9 9999999999999999999 8999 99999999999999999999 6677 8999999999999
Q ss_pred hHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000822 1066 SDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVI 1136 (1267)
Q Consensus 1066 kel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~ 1136 (1267)
++|+.+|+++++++..+.|.+|+++++++|+++|+.. =+++.....+....++.+.+.+++.++++.
T Consensus 753 ~eLE~~Le~E~r~~~~~~k~~rk~er~~kEl~~q~ee----~~k~~~~~~d~~~kl~~k~k~~krq~eeaE 819 (859)
T PF01576_consen 753 RELEEELESEQRRRAEAQKQLRKLERRVKELQFQVEE----ERKNAERLQDLVDKLQLKLKQLKRQLEEAE 819 (859)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999999999999999999999654 455666677788899999999999999988
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.90 E-value=2.7e-14 Score=190.13 Aligned_cols=820 Identities=14% Similarity=0.181 Sum_probs=406.5
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000822 313 SSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQV 389 (1267)
Q Consensus 313 ~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle---~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef 389 (1267)
..-..+++++..+++.++.++.+++.+++++. ..+..++..+..+..++..+..+| ..+......++.....|
T Consensus 189 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~q~kie~~~~~~~~le~ei----~~l~~~~~~l~~~~~~~ 264 (1311)
T TIGR00606 189 ETLRQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENEL----DPLKNRLKEIEHNLSKI 264 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 34556778899999999999999999999997 899999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhH-HHhhhhhHHHHHHHhhhhhhhhhhhhhhh-------hhhhchHHHHHHHhc
Q 000822 390 SNVNEELDKVSKEKEALEAAMADLTGNI-ARMKELCSELEEKLRNSDENFCKTDSLLS-------QALANNAELELKLKS 461 (1267)
Q Consensus 390 ~eL~eELe~lr~~keslEk~i~DLessi-eeL~e~~eeLEeeL~~~~~e~~K~e~~ls-------q~~~~~~El~~~~k~ 461 (1267)
..+...+..++..+......+.++..++ ..++.++++|...+.....-+...+.-+. .....-+.+......
T Consensus 265 ~~l~~ql~~l~~~~~~~~~~~~rL~~~i~~~l~~s~eEL~~ll~~f~~~~~e~~~~~~~le~e~~~l~~el~~l~~~~~~ 344 (1311)
T TIGR00606 265 MKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEKTE 344 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999877 57899999999888888774443333111 111111111111111
Q ss_pred HHHHhhhhHHHHHHhccchHHHHHHHHH----------------------hhHHHHHHHHHH-hhHhhhHHHHHHHHHHH
Q 000822 462 LEEQHNETGAAAATASQRNLELEDIIRA----------------------SNEAAEEAKSQL-RELEPRFIAAEQRSVEL 518 (1267)
Q Consensus 462 lee~~~~he~~~~~~~qk~~EL~~qi~~----------------------~~~~~Ek~k~~l-~~l~~~~~~~Ekk~keL 518 (1267)
+.-..+.+++-+.........+...+.. +...+.+.-... ..+......+......+
T Consensus 345 l~~e~gkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 424 (1311)
T TIGR00606 345 LLVEQGRLQLQADRHQEHIRARDSLIQSLATRLELDGFERGPFSERQIKNFHTLVIERQEDEAKTAAQLCADLQSKERLK 424 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112222222222222222222222222 111111111111 33344444444444444
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHH
Q 000822 519 EQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLH---DQMNDYKDKITQLELILNQS--NTRSSELEEELR 593 (1267)
Q Consensus 519 E~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele---~kleelqkkIs~LEsqLk~L--qsRireLEEele 593 (1267)
+..++.+..++......+......+......+..+..++.... +.+..+...+..++..+... ......+...+.
T Consensus 425 q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 504 (1311)
T TIGR00606 425 QEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVK 504 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4444444444444444444444444444444444444433221 11222222222222222211 111112222222
Q ss_pred HHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Q 000822 594 ITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKC----------E 663 (1267)
Q Consensus 594 ~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK~----------k 663 (1267)
.....+...+.....+...+..+.. ......++. ........+...+..........+ .
T Consensus 505 ~~~~~~~~le~~~~~l~~~~~~~~~-~~~~~~~~~----------~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (1311)
T TIGR00606 505 SLQNEKADLDRKLRKLDQEMEQLNH-HTTTRTQME----------MLTKDKMDKDEQIRKIKSRHSDELTSLLGYFPNKK 573 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH
Confidence 2222222211111111111111111 000000000 000000111111111111111111 3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000822 664 EAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLR 743 (1267)
Q Consensus 664 ~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR 743 (1267)
.|...+......+..+......+++.+..++..+...+..+..+..++......+.. .-.+.+|-..|..++..+...+
T Consensus 574 ~l~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~~-~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 574 QLEDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFD-VCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCchhHHHHHHHHHHHHHHHH
Confidence 345555555566666666666666777777777777776666666666666555551 1155677778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------------ccchh----hHHHHHHHHHHH----HHHHHHHHHHHhhhhhhhhHhH
Q 000822 744 NDLNMTQERLESIEKDLKAA-------------GLRET----DVMEKLKSAEEQ----LEQQTRVLEQATSRNSELESLH 802 (1267)
Q Consensus 744 ~El~l~q~k~esiE~~l~~~-------------~~~ee----e~~~k~k~~~~q----l~~~~~~LE~e~~~~~e~~~~~ 802 (1267)
..+...+.....+..-+... ++..+ .|..++...... .......+.........+.
T Consensus 653 ~~~~~~~~~~~~~~k~ie~a~~~~~~~C~LC~R~f~~eee~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~--- 729 (1311)
T TIGR00606 653 KQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEML--- 729 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcCCCCCCCCCChhHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHH---
Confidence 88888888888777766665 22222 222222222221 1111222222222111111
Q ss_pred HHhhHhhHHHHHHHHHhhhcc-hhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH------HHHhhHHHH
Q 000822 803 ESLMRESEMKLQDALANITSR-DSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYF------IKVTSLEST 875 (1267)
Q Consensus 803 e~~~kk~E~~Lqeale~~~~~-~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~------~~l~~le~~ 875 (1267)
.+.-.++.+..+ ..+...+.+.+..++.++..+...+++.......+..++..+. ..+..+...
T Consensus 730 ---------~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~e 800 (1311)
T TIGR00606 730 ---------GLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQME 800 (1311)
T ss_pred ---------HhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 011133444433 3455555566666666666666666666655555555553332 233444667
Q ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhh
Q 000822 876 NEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSA 955 (1267)
Q Consensus 876 ~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~ 955 (1267)
+..++.+++++......... . .....+++++..++..++...+...............|..|..... .
T Consensus 801 i~~l~~qie~l~~~l~~~~~-~----~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~---e---- 868 (1311)
T TIGR00606 801 LKDVERKIAQQAAKLQGSDL-D----RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTN---E---- 868 (1311)
T ss_pred HHHHHHHHHHHHHHhccccc-c----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----
Confidence 77777777777666532222 1 1334455555555555555544444444333333333333322221 1
Q ss_pred hHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHhh
Q 000822 956 TEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQT 1035 (1267)
Q Consensus 956 ~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~~~~~~~~~a~~~a~~~k~e~e~~l~~~k~LE~~i~eLq~ 1035 (1267)
+......+.+.+. ...++.+++.++...+..+.. .++.++..|..+..
T Consensus 869 ----l~~~klkl~~~l~-------~r~~le~~L~el~~el~~l~~---------------------~~~~~~~~~~~~~~ 916 (1311)
T TIGR00606 869 ----LKSEKLQIGTNLQ-------RRQQFEEQLVELSTEVQSLIR---------------------EIKDAKEQDSPLET 916 (1311)
T ss_pred ----HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHhhhhhH
Confidence 1111111111222 222333333322222211110 12222222222222
Q ss_pred hhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHH--------HHHHHHHHHHHH
Q 000822 1036 RSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIED--------LTQKLTSEVQGL 1107 (1267)
Q Consensus 1036 ~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kE--------l~~q~~~~~k~l 1107 (1267)
.+..+..+...+.. ........+..++..+...+ ..|......|++ ....+...+..+
T Consensus 917 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~i~~y~~~~~~~qL~~~e~el~~~ 982 (1311)
T TIGR00606 917 FLEKDQQEKEELIS---SKETSNKKAQDKVNDIKEKV-----------KNIHGYMKDIENKIQDGKDDYLKQKETELNTV 982 (1311)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 21111111100000 00011122222222222211 111111112211 122233344455
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000822 1108 QTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKFALETRIKELEELLVNVETQ 1187 (1267)
Q Consensus 1108 k~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~ 1187 (1267)
...++.+..+...++...+.+.+++.+.. .....+...++.++ ...+...+...|..|+.++.....
T Consensus 983 ~~~ie~le~e~~~l~~~i~~l~kel~~~~-----------~~kr~l~dnL~~~~-~~~~l~el~~eI~~l~~~~~~~~~- 1049 (1311)
T TIGR00606 983 NAQLEECEKHQEKINEDMRLMRQDIDTQK-----------IQERWLQDNLTLRK-RENELKEVEEELKQHLKEMGQMQV- 1049 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhccH-
Confidence 66777777777777777777777777766 66666666676665 455566777888888887765432
Q ss_pred HHHHHhhhhhhhhhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhH
Q 000822 1188 FKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQI 1236 (1267)
Q Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1236 (1267)
.+++.....-...++.---.++.+.+..-.|..|+..|+.+|..
T Consensus 1050 -----~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1050 -----LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22222222223333333346788889999999999999999943
No 6
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.84 E-value=5.7e-11 Score=158.80 Aligned_cols=164 Identities=8% Similarity=0.076 Sum_probs=126.0
Q ss_pred hhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHhhHHHHH-----HHHH
Q 000822 808 ESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALL--KEELDSYFIKVTSLESTN-----EELQ 880 (1267)
Q Consensus 808 k~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l--~~Ele~~~~~l~~le~~~-----kelq 880 (1267)
.++..+...-.++....++...++..++.+...|.+++..-......+..+ +.++..+...+..+..++ ..++
T Consensus 974 ~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~ 1053 (1311)
T TIGR00606 974 QKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMK 1053 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 344444444444556666777777777777777777776665555444444 555555555555555444 5778
Q ss_pred HHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhhhHHhH
Q 000822 881 RQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSATEARV 960 (1267)
Q Consensus 881 ~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~~e~~~ 960 (1267)
.++.++....+...+.++.+.+..+.|++.|..|+.+|+. ...+.++++++++.-++....-...-+.-.+.+|+..+
T Consensus 1054 ~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e--~~yk~a~~ryrka~i~~~~~~~~~~d~~~~~~~~~~~~ 1131 (1311)
T TIGR00606 1054 QEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE--PQFRDAEEKYREMMIVMRTTELVNKDLDIYYKTLDQAI 1131 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999888899999999999999999999999977 78999999999999998877777777777888899999
Q ss_pred HHHHHHHHHHHhh
Q 000822 961 KEAEIQLHEAIQR 973 (1267)
Q Consensus 961 ~~~~~q~~E~~~~ 973 (1267)
..-|+...+.+++
T Consensus 1132 ~~~~~~~~~~~n~ 1144 (1311)
T TIGR00606 1132 MKFHSMKMEEINK 1144 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998886
No 7
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.77 E-value=5.8e-09 Score=137.22 Aligned_cols=192 Identities=23% Similarity=0.278 Sum_probs=107.7
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Q 000822 95 ANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQ 174 (1267)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~~~e~~~L~~~lq 174 (1267)
+-.|+..|+-.+..+..--+-...+...+..+|..+......+...+..+......|..-..+. ..++.+|...+
T Consensus 57 ~ekK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~~~~~~l~~~~~~~~~~~~~l~~~~se~----~~qkr~l~~~l- 131 (1822)
T KOG4674|consen 57 LEKKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLSSERSNLSWEIDALKLENSQLRRAKSEL----QEQKRQLMELL- 131 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH----HHHHHHHHHHH-
Confidence 3344444444444444433333444444444444444433344444444444444444410000 01222222222
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcHHHHhhhHHhhhccCCchhhhhhhhhhHHhhHHhhhcchH
Q 000822 175 AEEAKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGSHAESESQRALEFERLLETANVSAK 254 (1267)
Q Consensus 175 ~~ee~~~~L~~~ke~lee~~~~l~~~kkk~qe~~~~L~~~~~~~~~~eel~~ee~~~a~~~~qK~lelEk~~~~~~~~a~ 254 (1267)
+-..+++......+..++..|..+.+..-+++..+..-.-. ..+ -.....+ ++-|+-
T Consensus 132 --e~~~~ele~l~~~n~~l~~ql~ss~~~~~e~e~r~~e~~s~----------~vs-~q~k~~r-l~QEks--------- 188 (1822)
T KOG4674|consen 132 --ERQKAELEALESENKDLNDQLKSSTKTLSELEARLQETQSE----------DVS-SQLKEER-LEQEKS--------- 188 (1822)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHH-HHHHHHH-HHHHHH---------
Confidence 23344555555566777777877777777777766432221 111 1122334 555555
Q ss_pred HHHHHHHhHHHHHhhhhHhhhhhHh--------HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhh
Q 000822 255 EVEGQMASLQEELKGLNEKISEKEK--------VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSS 314 (1267)
Q Consensus 255 ~~e~~~~~l~ee~~~~~d~~~~~~k--------~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ 314 (1267)
.++...+.|..++.+..|+...+.. ++..|.....+++++++.+..-+.+...|..++..
T Consensus 189 ll~s~~~wL~~eL~~~~ekll~~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~ 256 (1822)
T KOG4674|consen 189 LLESENKWLSRELSKVNEKLLSLRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIES 256 (1822)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888899999999998877665 88999999999999999977777777777765544
No 8
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.73 E-value=2.8e-09 Score=140.15 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=10.8
Q ss_pred hhhHHHhhHHHhHHHHhhhhhh
Q 000822 976 QRDIEANNLNEKVSVLEGQIKS 997 (1267)
Q Consensus 976 ~~e~e~k~l~ekl~~~E~~~~~ 997 (1267)
.+..+..+|......|+..|..
T Consensus 997 ~l~~q~~dL~~~~~~L~~~i~~ 1018 (1179)
T TIGR02168 997 ELKERYDFLTAQKEDLTEAKET 1018 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544444
No 9
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=99.73 E-value=1.9e-08 Score=132.52 Aligned_cols=64 Identities=23% Similarity=0.290 Sum_probs=41.3
Q ss_pred HHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHH
Q 000822 1023 LKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL 1100 (1267)
Q Consensus 1023 ~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~ 1100 (1267)
..+...+|.+|+.++.- ++..+.-++..+.++..++....++-.-.--...+...|+.++..+.
T Consensus 1238 ~~~~~~k~qEl~~~i~k--------------l~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~ 1301 (1822)
T KOG4674|consen 1238 NEANLEKIQELRDKIEK--------------LNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKY 1301 (1822)
T ss_pred HHHHHHHHHHHHHHHHH--------------HHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66677777777766333 33556666666666766666665554444455556888888888883
No 10
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.71 E-value=6.4e-09 Score=136.84 Aligned_cols=7 Identities=43% Similarity=0.496 Sum_probs=3.4
Q ss_pred ccccccC
Q 000822 22 PIKETNG 28 (1267)
Q Consensus 22 ~~~~~~~ 28 (1267)
.|-+.||
T Consensus 27 ~i~G~NG 33 (1179)
T TIGR02168 27 GIVGPNG 33 (1179)
T ss_pred EEECCCC
Confidence 4444454
No 11
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.71 E-value=8.8e-09 Score=135.86 Aligned_cols=8 Identities=38% Similarity=0.501 Sum_probs=4.2
Q ss_pred CccccccC
Q 000822 21 DPIKETNG 28 (1267)
Q Consensus 21 ~~~~~~~~ 28 (1267)
-.|-+.||
T Consensus 26 ~~i~G~NG 33 (1164)
T TIGR02169 26 TVISGPNG 33 (1164)
T ss_pred EEEECCCC
Confidence 34555555
No 12
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=99.68 E-value=6.2e-08 Score=127.99 Aligned_cols=18 Identities=11% Similarity=0.200 Sum_probs=9.7
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 000822 1148 ATEETFKSEIESLKAQAA 1165 (1267)
Q Consensus 1148 ~~~~~~~~e~~~lr~~~~ 1165 (1267)
...+.+..-|..|+....
T Consensus 1000 ~~~~~l~~~i~~l~~~~~ 1017 (1164)
T TIGR02169 1000 EERKAILERIEEYEKKKR 1017 (1164)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555666654443
No 13
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.67 E-value=2.9e-08 Score=131.80 Aligned_cols=327 Identities=24% Similarity=0.359 Sum_probs=143.0
Q ss_pred hHHHHHhhhhHhhhhhHhHHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHH
Q 000822 262 SLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEIS 341 (1267)
Q Consensus 262 ~l~ee~~~~~d~~~~~~k~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkd 341 (1267)
.+-+|+.|.-.=..+..+.+..+..+..+|...++.+.--..++.-|+........ -.++..++..+.. .-+-.+..
T Consensus 159 ~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~l~~L~~q~~~a~~-y~~l~~e~~~~~~--~~~~~~~~ 235 (1163)
T COG1196 159 KLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAER-YQELKAELRELEL--ALLLAKLK 235 (1163)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHH
Confidence 36667777666666666666666666666666555533334445555544333333 1112222222222 11112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhH
Q 000822 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNE-------ELDKVSKEKEALEAAMADLT 414 (1267)
Q Consensus 342 rle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~e-------ELe~lr~~keslEk~i~DLe 414 (1267)
.+...+..+...+......+..+..++.+-...+..+...+.+....+..+.. .+..+......+...+..+.
T Consensus 236 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~ 315 (1163)
T COG1196 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELE 315 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444444444444444444444444444444444444444444444444 44444444444444444444
Q ss_pred hhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHH
Q 000822 415 GNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAA 494 (1267)
Q Consensus 415 ssieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~ 494 (1267)
..+..+......+.+.+.........++ .-..++......+.....+++..... ...++...+...+..+
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~e~~~~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~ 385 (1163)
T COG1196 316 NELEELEERLEELKEKIEALKEELEERE-------TLLEELEQLLAELEEAKEELEEKLSA---LLEELEELFEALREEL 385 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhHHHHHHHHHHHH
Confidence 4444444444444444444444433332 22234444445555544444444441 1122333333333333
Q ss_pred HHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 495 EEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQL 574 (1267)
Q Consensus 495 Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~L 574 (1267)
.....++......+...+..+..++..++.+..+...+.+++..+...+..+...+......+..+...++.+...+..+
T Consensus 386 ~~~~~~~~~~~~~l~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 465 (1163)
T COG1196 386 AELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKEL 465 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 575 ELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 575 EsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
+..+..+...+..+...+..+...+..
T Consensus 466 ~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 466 ERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 14
>PRK02224 chromosome segregation protein; Provisional
Probab=99.63 E-value=4.6e-09 Score=135.72 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000822 680 ASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDL 746 (1267)
Q Consensus 680 k~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El 746 (1267)
...+.........++.....+...+.++...++++...+..++ .+.++...+.+++..+..++..+
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le-~~~~~~~~i~~~~~~~~~~~~~~ 615 (880)
T PRK02224 550 EAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLE-RIRTLLAAIADAEDEIERLREKR 615 (880)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444444444444444444 34444444444444444333333
No 15
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.58 E-value=2.1e-07 Score=117.26 Aligned_cols=369 Identities=18% Similarity=0.252 Sum_probs=187.7
Q ss_pred HhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000822 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1267)
Q Consensus 311 rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~ 390 (1267)
-+.++..++++-+..+..++..+..++.+-.++...+..|.+++ +...++..+...++... ..+.
T Consensus 40 Elkrer~~rkee~a~l~~~k~qlr~~q~e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~--------------~e~e 104 (775)
T PF10174_consen 40 ELKRERALRKEEAAELSRLKEQLRVTQEENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQ--------------YEFE 104 (775)
T ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcc--------------cccc
Confidence 56788888999999999999999999999999999899999988 88888777777763333 3344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhH
Q 000822 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETG 470 (1267)
Q Consensus 391 eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he 470 (1267)
.+.. ++........+-..++.+...++.+.+..++++..+.+.+..+-+++. ++..+.--|.-.+....
T Consensus 105 ~l~~-ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~~e----------ei~kL~e~L~~~g~~~~ 173 (775)
T PF10174_consen 105 SLQE-LDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKADE----------EIEKLQEMLQSKGLSAE 173 (775)
T ss_pred hhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHhhcCCccc
Confidence 4444 444444444444555555555566666666666666666666666666 66666655543333221
Q ss_pred --HHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000822 471 --AAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQ-LNLVELKSSDSEREVREFSEKLSQLS 547 (1267)
Q Consensus 471 --~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~Q-L~eLq~K~~e~erei~eLeeqiskLq 547 (1267)
..-..+..+..+++..+-.+..-++...... ..+-.+ ...++...+.+.+. -++
T Consensus 174 ~~~~~~~~~~~~~~~e~~~~~le~lle~~e~~~--------------~~~r~~l~~~~~~~~~~a~t~---------alq 230 (775)
T PF10174_consen 174 AEEEDNEALRRIREAEARIMRLESLLERKEKEH--------------MEAREQLHRRLQMERDDAETE---------ALQ 230 (775)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------hhhhHHHHHHhhcCCCchhHH---------HHH
Confidence 1111111123333333322221111111111 000000 00011111111111 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhh
Q 000822 548 TALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKL 627 (1267)
Q Consensus 548 sEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kL 627 (1267)
..|..++..+..+...+.. ++..+..+.+++.-.....+.+..+++.
T Consensus 231 ~~ie~Kd~ki~~lEr~l~~-------le~Ei~~L~~~~~~~~~~r~~~~k~le~-------------------------- 277 (775)
T PF10174_consen 231 TVIEEKDTKIASLERMLRD-------LEDEIYRLRSRGELSEADRDRLDKQLEV-------------------------- 277 (775)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhcccccccchHHHHHHHHH--------------------------
Confidence 2222222222222222222 2222222222222222221111111111
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 000822 628 EGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKEREL 707 (1267)
Q Consensus 628 Eeae~~leelEe~LEk~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL 707 (1267)
.......+...++..+..+..-...+..+..++........+++..+..++..+.+.+..+.-+.+.+..++..+..-
T Consensus 278 --~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k 355 (775)
T PF10174_consen 278 --YKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEK 355 (775)
T ss_pred --HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 001111111112222223333333334444444444444445555555555555555555555555555555555556
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000822 708 TESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1267)
Q Consensus 708 ~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1267)
..+++..+..+..++.+..-+...|..+-+.++....+++.++.++++++..|..+
T Consensus 356 ~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ek 411 (775)
T PF10174_consen 356 NSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREK 411 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666667777777777777777777777788888888899888877766
No 16
>PRK02224 chromosome segregation protein; Provisional
Probab=99.55 E-value=1.7e-07 Score=121.34 Aligned_cols=6 Identities=17% Similarity=0.357 Sum_probs=2.5
Q ss_pred cccccc
Q 000822 79 SVVDRS 84 (1267)
Q Consensus 79 ~~~~~~ 84 (1267)
-.|.|+
T Consensus 81 ~~i~r~ 86 (880)
T PRK02224 81 YHIERR 86 (880)
T ss_pred EEEEEE
Confidence 344443
No 17
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=99.55 E-value=1.4e-06 Score=116.09 Aligned_cols=104 Identities=29% Similarity=0.382 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000822 515 SVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRI 594 (1267)
Q Consensus 515 ~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~ 594 (1267)
+..+..++..+...+......+..+...+..+...+..+...+..+...+..+...+..+...+..+..++..+...+..
T Consensus 669 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 748 (1163)
T COG1196 669 LKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEE 748 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHhhHHHHhhhhhhhhHHHHH
Q 000822 595 TKERSAEDEDRANMSHQRSIELED 618 (1267)
Q Consensus 595 L~EeLeE~E~rak~~rqrs~eLee 618 (1267)
+...+.....+.......+..+.+
T Consensus 749 ~~~~~~~~~~~~~~~~~~l~~~~~ 772 (1163)
T COG1196 749 LEEELEELQERLEELEEELESLEE 772 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544444444444444433
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=99.46 E-value=1e-06 Score=114.02 Aligned_cols=55 Identities=22% Similarity=0.243 Sum_probs=32.6
Q ss_pred HhhHHhhhcchHHHHHHHHhHHHHHhhhhHhhhhhHhHHHHHHhhhhhhhHHHHH
Q 000822 243 ERLLETANVSAKEVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEE 297 (1267)
Q Consensus 243 Ek~~~~~~~~a~~~e~~~~~l~ee~~~~~d~~~~~~k~ee~~~~~~~~l~~~ee~ 297 (1267)
++....++.-...++.++..+...+..+.+....+..++..+..+..++...+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e 215 (880)
T PRK03918 161 ENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSE 215 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444456777777777777776666666555666666666665555444
No 19
>PRK03918 chromosome segregation protein; Provisional
Probab=99.38 E-value=7.3e-06 Score=106.28 Aligned_cols=11 Identities=18% Similarity=0.108 Sum_probs=6.7
Q ss_pred CCcccccccCC
Q 000822 76 DKPSVVDRSSS 86 (1267)
Q Consensus 76 ~~~~~~~~~~~ 86 (1267)
+.+.+|.|+..
T Consensus 81 ~~~~~i~R~~~ 91 (880)
T PRK03918 81 GRKYRIVRSFN 91 (880)
T ss_pred CeEEEEEEEEc
Confidence 44566777654
No 20
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=99.26 E-value=3.9e-05 Score=97.31 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000822 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEA 886 (1267)
Q Consensus 832 e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~ 886 (1267)
.+|-+|.++++.+..+++....++.+.+..+-.+...|.+++.-++---.++-++
T Consensus 664 ~qleeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~Errk~lEE~l~m 718 (775)
T PF10174_consen 664 KQLEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEAERRKQLEEVLEM 718 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888888888777777777777665444444444
No 21
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=0.00055 Score=87.74 Aligned_cols=207 Identities=19% Similarity=0.287 Sum_probs=128.2
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 000822 689 RTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRET 768 (1267)
Q Consensus 689 E~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~ee 768 (1267)
.+..++..++..+...+.+..++..+......+...+.++...++.+...+..+--.+..+.+.+.++|.....+ .
T Consensus 779 ~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~----~ 854 (1293)
T KOG0996|consen 779 SVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKK----V 854 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----c
Confidence 344445555555555566666655555555555555555555555555555555555566666666666653333 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhh-----cchhHhhhHHHHHHHHHHHHHH
Q 000822 769 DVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANIT-----SRDSEAKSFSEKLKNLEGQVKM 843 (1267)
Q Consensus 769 e~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~-----~~~sEa~~l~e~LKKLE~qike 843 (1267)
--...++..+++|..+..++++.... +.+|.-=..||..|+.+. ..++.+.+.+.++.++..+|+-
T Consensus 855 ~d~~~l~~~~~~ie~l~kE~e~~qe~---------~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k 925 (1293)
T KOG0996|consen 855 VDKKRLKELEEQIEELKKEVEELQEK---------AAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAK 925 (1293)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHH
Confidence 12345677788888888888877411 222122234566666655 5678888889999999999988
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000822 844 YEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAIS 923 (1267)
Q Consensus 844 le~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~ 923 (1267)
+...+.-+.+....+++.+ ..+++-++....+++.+... ...+.....+++..+..+..
T Consensus 926 ~~~~i~~s~~~i~k~q~~l-------~~le~~~~~~e~e~~~L~e~--------------~~~~~~k~~E~~~~~~e~~~ 984 (1293)
T KOG0996|consen 926 LTVAIKTSDRNIAKAQKKL-------SELEREIEDTEKELDDLTEE--------------LKGLEEKAAELEKEYKEAEE 984 (1293)
T ss_pred hHHHHhcCcccHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH--------------HhhhHHHHHHHHHHHHHHHH
Confidence 8888888878877777777 66666666666666655543 33344444455556666655
Q ss_pred HHHHHH
Q 000822 924 EKEATG 929 (1267)
Q Consensus 924 ere~ae 929 (1267)
..+.+.
T Consensus 985 ~~~E~k 990 (1293)
T KOG0996|consen 985 SLKEIK 990 (1293)
T ss_pred HHHHHH
Confidence 555555
No 22
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.98 E-value=0.00096 Score=89.84 Aligned_cols=241 Identities=17% Similarity=0.293 Sum_probs=110.6
Q ss_pred hHHHHHHHHhHHHHHhhhhHhhhhhH-hHHHHHHhhhhhhhHHHHH-hccchhhHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 000822 253 AKEVEGQMASLQEELKGLNEKISEKE-KVEEELKRSNTEISAIQEE-LGLSKLQLLDLEQRFSSKEALITNLTQELDLIK 330 (1267)
Q Consensus 253 a~~~e~~~~~l~ee~~~~~d~~~~~~-k~ee~~~~~~~~l~~~ee~-~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK 330 (1267)
.......+..+...+....+.++.-. .+...+....+.|..++.+ ..--..-|.++..++.+... +..++..++
T Consensus 290 ~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~----~~~~~~~l~ 365 (1201)
T PF12128_consen 290 LNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPE----WRNELENLQ 365 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHH----HHHHHHHHH
Confidence 33555555556666555555444322 3777777777777777777 55555667777777777777 555555555
Q ss_pred HhhHhHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000822 331 ASESQAKEEISALDN----LLADAK----ENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS-NVNEELDKVSK 401 (1267)
Q Consensus 331 ~s~~~lKedkdrle~----~l~eL~----~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~-eL~eELe~lr~ 401 (1267)
.....+.....+... .+..+. ..+..+..++..+...+. .........+..+...+. .....+..+..
T Consensus 366 ~~~~~Lt~~~~di~~ky~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 442 (1201)
T PF12128_consen 366 EQLDLLTSKHQDIESKYNKLKQKLEEAFNRQQERLQAQQDEIREEKA---ERREQIEEEYQALEQELRQQSQEQLEELQE 442 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544444444444432 222222 222222222222222221 112222333333333333 23333444455
Q ss_pred HHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchH
Q 000822 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNL 481 (1267)
Q Consensus 402 ~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~ 481 (1267)
.+..+...+..+...+.. +....++-..+...+..+.....-.+++...-..+......+...+.....+...++++..
T Consensus 443 ~~~~~~~~l~~l~~~~~~-~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~ 521 (1201)
T PF12128_consen 443 QREQLKSELAELKQQLKN-PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELE 521 (1201)
T ss_pred HHHHHHHHHHHHHHHHhC-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555543321 1122333333333333333333333333333333333344444444444445555555555
Q ss_pred HHHHHHHHhhHHHHHHHHHH
Q 000822 482 ELEDIIRASNEAAEEAKSQL 501 (1267)
Q Consensus 482 EL~~qi~~~~~~~Ek~k~~l 501 (1267)
++..+++.++..+...+.-|
T Consensus 522 ~~~~~~~~l~~~L~p~~gSL 541 (1201)
T PF12128_consen 522 ELRAQIAELQRQLDPQKGSL 541 (1201)
T ss_pred HHHHHHHHHHHhhCCCCCcH
Confidence 55555555444444333333
No 23
>PRK01156 chromosome segregation protein; Provisional
Probab=98.94 E-value=0.001 Score=87.08 Aligned_cols=9 Identities=22% Similarity=0.124 Sum_probs=5.0
Q ss_pred CcccccccC
Q 000822 77 KPSVVDRSS 85 (1267)
Q Consensus 77 ~~~~~~~~~ 85 (1267)
..-+|.|+.
T Consensus 78 ~~y~i~R~~ 86 (895)
T PRK01156 78 HVYQIRRSI 86 (895)
T ss_pred EEEEEEEEE
Confidence 345666664
No 24
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=98.73 E-value=0.0057 Score=82.59 Aligned_cols=97 Identities=19% Similarity=0.258 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHH
Q 000822 711 LNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1267)
Q Consensus 711 leevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~ 790 (1267)
..++++.+......+..+...+..+...+...+..+.-++....+...++... ..+.+..+..++..+...+..
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~~~l~~ 696 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA------KEERKEQIEEQLNELEEELKQ 696 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444433333333333333333322222 344444555555555555555
Q ss_pred HhhhhhhhhHhHHHhhHhhHHHH
Q 000822 791 ATSRNSELESLHESLMRESEMKL 813 (1267)
Q Consensus 791 e~~~~~e~~~~~e~~~kk~E~~L 813 (1267)
...........+......+.+++
T Consensus 697 ~~~e~~~~~~~~~~~~~e~~~e~ 719 (1201)
T PF12128_consen 697 LKQELEELLEELKEQLKELRNEL 719 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 54444444444444444444333
No 25
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=98.71 E-value=0.0051 Score=80.87 Aligned_cols=123 Identities=15% Similarity=0.193 Sum_probs=108.5
Q ss_pred hhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000822 312 FSSKEALITNLTQELDLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQ 388 (1267)
Q Consensus 312 l~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle---~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eae 388 (1267)
|.+-.++|+|+..+++..+..+.|++-.++++. .++......|.....++..+..++ ..+......|+..-..
T Consensus 187 ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~----~~~~~~i~ei~~~~~e 262 (1294)
T KOG0962|consen 187 LDSLKKLRKDQSQEVKTKKQELEHLKTLKERAEVLRLNIHSGQRKIEKSKEEVSELENEL----GPIEAKIEEIEKSLKE 262 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHH
Confidence 456678999999999999999999999999997 888889999999999998888888 8889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhHH-HhhhhhHHHHHHHhhhhhhh
Q 000822 389 VSNVNEELDKVSKEKEALEAAMADLTGNIA-RMKELCSELEEKLRNSDENF 438 (1267)
Q Consensus 389 f~eL~eELe~lr~~keslEk~i~DLessie-eL~e~~eeLEeeL~~~~~e~ 438 (1267)
+..+......+...+..+.+++.++...|. ..+.++..|...++..+..+
T Consensus 263 l~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~~n~~~~~ 313 (1294)
T KOG0962|consen 263 LEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELLSNFEERL 313 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHHhHHHHH
Confidence 999999999999999999999999999987 66677777777777766633
No 26
>PRK01156 chromosome segregation protein; Provisional
Probab=98.71 E-value=0.005 Score=80.71 Aligned_cols=13 Identities=15% Similarity=0.429 Sum_probs=5.3
Q ss_pred HHHhHHHHHhhhh
Q 000822 259 QMASLQEELKGLN 271 (1267)
Q Consensus 259 ~~~~l~ee~~~~~ 271 (1267)
.+..+..++..+.
T Consensus 174 ~~~~~~~ei~~le 186 (895)
T PRK01156 174 VIDMLRAEISNID 186 (895)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 27
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.61 E-value=0.0081 Score=77.61 Aligned_cols=202 Identities=22% Similarity=0.292 Sum_probs=95.6
Q ss_pred HHHHHHHhHHHHHhhhhHhhhhhHhHHHHHHhhhhhhhHHHHH--hccch--hhHHHHHHHhhhHHHhhhhhHHHHHHHH
Q 000822 255 EVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEE--LGLSK--LQLLDLEQRFSSKEALITNLTQELDLIK 330 (1267)
Q Consensus 255 ~~e~~~~~l~ee~~~~~d~~~~~~k~ee~~~~~~~~l~~~ee~--~~l~K--s~l~dLE~rl~~ee~lrKe~~~ELk~lK 330 (1267)
..+.+-.+.++.++.+.-++.|+.|-=+......+++-..=++ ....+ +-|.+|+..+..++. ++...+..++
T Consensus 395 ~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~---~l~e~~~~l~ 471 (1293)
T KOG0996|consen 395 DLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEER---ELDEILDSLK 471 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 4444444556666666666666555222222222333222222 11122 556666655555444 5556666667
Q ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 331 ASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAM 410 (1267)
Q Consensus 331 ~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i 410 (1267)
....-++..+.+.+..+..+..++.....++....+.++.=...-+...+++.++...+......+...+.....+...+
T Consensus 472 ~~t~~~~~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l 551 (1293)
T KOG0996|consen 472 QETEGIREEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEEL 551 (1293)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 76666777777776555555444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHhHhhHHHhhhhhHHHHHHHhhhh-------hhhhhhhhhhhhhhhchHHHHHHH
Q 000822 411 ADLTGNIARMKELCSELEEKLRNSD-------ENFCKTDSLLSQALANNAELELKL 459 (1267)
Q Consensus 411 ~DLessieeL~e~~eeLEeeL~~~~-------~e~~K~e~~lsq~~~~~~El~~~~ 459 (1267)
.++...+.+.......+..+.+.+. +..--+-+.+|-+.|++.=|.-+.
T Consensus 552 ~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks~~~~~~s~~kVl~al~ 607 (1293)
T KOG0996|consen 552 PSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKSSLSSSRSRNKVLDALM 607 (1293)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 4444444444444444444444333 333333344444555554444443
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.54 E-value=0.019 Score=78.38 Aligned_cols=223 Identities=17% Similarity=0.229 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Q 000822 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQT 785 (1267)
Q Consensus 706 eL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~ 785 (1267)
.+...+..++.....+..++...+.++...+..+..+...+.....+....+..|+..|++-..+.+.+-...+ ..+.
T Consensus 989 ~Le~~Le~iE~~~~~areql~qaq~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~g~~~~~~~~~~~~~~~--~~l~ 1066 (1486)
T PRK04863 989 KLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARR--DELH 1066 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHhH--HHHH
Confidence 45555555566666666666666666666666666666666666666666788888889988888777766554 6677
Q ss_pred HHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHH----------
Q 000822 786 RVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKY---------- 855 (1267)
Q Consensus 786 ~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~---------- 855 (1267)
..|-.-+++++.+. -..+....|...+.+.|++++.+++.+...+..+...+
T Consensus 1067 ~~l~~~~~~~~~~~------------------~~~~~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~~~~~~ 1128 (1486)
T PRK04863 1067 ARLSANRSRRNQLE------------------KQLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLRLVKDN 1128 (1486)
T ss_pred HHHHHhHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777777777776 12235556666667777777777777777766655211
Q ss_pred ------------------------------HHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHhhcccchhhhH
Q 000822 856 ------------------------------ALLKEELDSYFIKVTSLEST------NEELQRQVVEANNKANNSSSENEL 899 (1267)
Q Consensus 856 ------------------------------~~l~~Ele~~~~~l~~le~~------~kelq~e~dE~~~~~~~~~~e~~~ 899 (1267)
..+-+.-+.|...|..++.. +-=.=.=+..+++++-.++-....
T Consensus 1129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~r~r~r~di~~~~~ 1208 (1486)
T PRK04863 1129 GVERRLHRRELAYLSADELRSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKVQFYIAVYQHLRERIRQDIIRTDD 1208 (1486)
T ss_pred ChhhhhhHhhhhccCchhhHHHHHHHHHHHHHhccCcHHHHHHHhhccCCCchhHHHhHHHHHHHHHHHHHhhhhhhcCC
Confidence 11112222222222221111 111111233444555455555556
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH--------HHHHHHHhhcccchhHHHHHHHH
Q 000822 900 LVETNNQLKSKVAELQELLDSAISEK--------EATGQQLASHMNTVTELTEQHSR 948 (1267)
Q Consensus 900 l~~~~~~Lesei~eLqe~Le~a~~er--------e~aee~l~~~~~~~~eL~e~~~r 948 (1267)
.......|..+|..++..|...++.. ....+++..+...|..|+..+.+
T Consensus 1209 p~et~e~Le~ei~rl~~~L~e~Er~L~~s~eEVa~~l~~rI~~a~~~V~~mN~~L~~ 1265 (1486)
T PRK04863 1209 PVEAIEQMEIELSRLTEELTSREQKLAISSESVANIIRKTIQREQNRIRMLNQGLQN 1265 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66778888888888888888877642 23344455555555555555544
No 29
>PRK04863 mukB cell division protein MukB; Provisional
Probab=98.45 E-value=0.031 Score=76.44 Aligned_cols=115 Identities=19% Similarity=0.137 Sum_probs=59.2
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELL--VETNNQLKSKVAELQELLDSAISEKEATGQ 930 (1267)
Q Consensus 853 rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l--~~~~~~Lesei~eLqe~Le~a~~ere~aee 930 (1267)
.++..+..+.+...+....+-.-+..+++=..++..=++...+--+.- -...+.+...+.++...|......--..-.
T Consensus 786 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~f~~~pe~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 865 (1486)
T PRK04863 786 KRIEQLRAEREELAERYATLSFDVQKLQRLHQAFSRFIGSHLAVAFEADPEAELRQLNRRRVELERALADHESQEQQQRS 865 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCcchhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777777774444443221111111111 134555556666666666666555555555
Q ss_pred HHhhcccchhHHHHHHHHhhhhhhh-hHHhHHHHHHHH
Q 000822 931 QLASHMNTVTELTEQHSRALELHSA-TEARVKEAEIQL 967 (1267)
Q Consensus 931 ~l~~~~~~~~eL~e~~~r~~~l~s~-~e~~~~~~~~q~ 967 (1267)
++..++..+.-|....-.++.|--- +-.+++.+..++
T Consensus 866 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 903 (1486)
T PRK04863 866 QLEQAKEGLSALNRLLPRLNLLADETLADRVEEIREQL 903 (1486)
T ss_pred HHHHHHHHHHHHHHhchhhhhcCCccHHHHHHHHHHHH
Confidence 5555555555444444333333222 333444444444
No 30
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.32 E-value=0.027 Score=69.95 Aligned_cols=47 Identities=17% Similarity=0.204 Sum_probs=23.6
Q ss_pred hccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHH
Q 000822 298 LGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALD 344 (1267)
Q Consensus 298 ~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle 344 (1267)
+.+.+..+..+..++...+.-+-..-.+|...|+-+..++..+.+..
T Consensus 36 L~~~qeel~~~k~~l~~~E~~k~~~l~ELe~akr~veel~~kLe~~~ 82 (522)
T PF05701_consen 36 LEKAQEELAKLKEQLEAAEREKAQALSELESAKRTVEELKLKLEKAQ 82 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555444455555555555555554444443
No 31
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.22 E-value=0.045 Score=68.64 Aligned_cols=192 Identities=16% Similarity=0.227 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1267)
+|......+..++.....++..+..+...+..|......-......+.. -...++|.|-+..-
T Consensus 99 ~f~~a~~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~-----------------~y~~~rk~ll~~~~ 161 (569)
T PRK04778 99 RFRKAKHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKD-----------------LYRELRKSLLANRF 161 (569)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHhcCc
Confidence 5555566666666666666666666665555555554444444444322 34567888889999
Q ss_pred hhHHHHHHhccchHHHHHHHHH-----hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 468 ETGAAAATASQRNLELEDIIRA-----SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1267)
Q Consensus 468 ~he~~~~~~~qk~~EL~~qi~~-----~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeq 542 (1267)
..|.++..+-++...++..+.+ ..+...+|+..+..+......++.....+=.-+.+++.-+ =.++.++..-
T Consensus 162 ~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~---P~ql~el~~g 238 (569)
T PRK04778 162 SFGPALDELEKQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTEL---PDQLQELKAG 238 (569)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHH
Confidence 9999999999999888888888 4555666666666666655555555544444444333222 1223333333
Q ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 543 LSQLSTA-----LKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 543 iskLqsE-----L~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
+.++... -..+...+..+...+......|..+ .+......+..+.+.++.+-+.++.
T Consensus 239 y~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l--~l~~~~~~~~~i~~~Id~Lyd~lek 300 (569)
T PRK04778 239 YRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEEL--DLDEAEEKNEEIQERIDQLYDILER 300 (569)
T ss_pred HHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333221 0123333444444444444444433 2334444455555555544444444
No 32
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=98.21 E-value=0.043 Score=68.16 Aligned_cols=148 Identities=18% Similarity=0.224 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-------HHHHHHHHH
Q 000822 641 LEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKE-------RELTESLNA 713 (1267)
Q Consensus 641 LEk~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~-------reL~eqlee 713 (1267)
|+..+..+......++.+......+..++...+..+..++.........+.++...+...+..+ .+......+
T Consensus 290 Le~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL~~~r~eLea~~~~e~~~k~~~~~ 369 (522)
T PF05701_consen 290 LEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAELNKTRSELEAAKAEEEKAKEAMSE 369 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHhhhcchhhhHHH
Confidence 4444444444444444444444444444444444444444444444444444444444444443 344444555
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 714 AADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA 791 (1267)
Q Consensus 714 vek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e 791 (1267)
+...+..+..+.+..+.........+..++.++..+...+...+.+|... -.+++.-+-+....+..+.+--+..
T Consensus 370 l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa---~ke~eaaKasEa~Ala~ik~l~e~~ 444 (522)
T PF05701_consen 370 LPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAA---LKEAEAAKASEALALAEIKALSESE 444 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccc
Confidence 67777777777777777777777888888888888888888888888888 6666666666666666666543433
No 33
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=98.20 E-value=0.047 Score=68.11 Aligned_cols=86 Identities=14% Similarity=0.168 Sum_probs=56.4
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
.+++-..+.+.+..+.+|+...+.+|..|+..+...+.+.+.++.-+ ..+.+.+++...++..+.+.+..+..
T Consensus 83 stqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti-------~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 83 STQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTI-------QGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555566667777777777777777777777777777777666554 55556666666666666666666666
Q ss_pred HHHHHHHHHHHhH
Q 000822 402 EKEALEAAMADLT 414 (1267)
Q Consensus 402 ~keslEk~i~DLe 414 (1267)
........|-...
T Consensus 156 eLsAk~~eIf~~~ 168 (1265)
T KOG0976|consen 156 ELSAKAHDIFMIG 168 (1265)
T ss_pred HHhhhhHHHHHHH
Confidence 6555555554444
No 34
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=98.19 E-value=0.0012 Score=73.69 Aligned_cols=214 Identities=24% Similarity=0.353 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHH
Q 000822 379 EAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELK 458 (1267)
Q Consensus 379 ~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~ 458 (1267)
...+......+..+...|.........++..+..|...|..+.+.++..+..|..+ ..-|..+...-.+...-
T Consensus 7 ~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~-------~~kL~~~e~~~de~er~ 79 (237)
T PF00261_consen 7 KDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEA-------TEKLEEAEKRADESERA 79 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHH-------HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 33344444444444444455555555555555555555544444433333333333 33333333333344444
Q ss_pred HhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000822 459 LKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVRE 538 (1267)
Q Consensus 459 ~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~e 538 (1267)
++.|+.....+ .+-|+.+-..+..++..+.+..........++..++..+.....++..++..+..
T Consensus 80 ~k~lE~r~~~~--------------eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~e 145 (237)
T PF00261_consen 80 RKVLENREQSD--------------EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKE 145 (237)
T ss_dssp HHHHHHHHHHH--------------HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Confidence 55555444443 3444444455555555556666666666677777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhh
Q 000822 539 FSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRS 613 (1267)
Q Consensus 539 LeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs 613 (1267)
+...+..+...+..++..-..+..+...|...|..|...++....|..+++..+..|...+...+..+...+...
T Consensus 146 LE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~ 220 (237)
T PF00261_consen 146 LEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKY 220 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777778888888888888888888888888888888877777777555554444433
No 35
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=98.19 E-value=0.035 Score=68.29 Aligned_cols=142 Identities=21% Similarity=0.278 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
+....+.+......++..++-+.....++...|..++..+..+..+. .........+............++. .
T Consensus 190 L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~----~E~e~~~~~lk~~~~elEq~~~eLk---~ 262 (546)
T PF07888_consen 190 LKQQQKELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKE----KEQEKELDKLKELKAELEQLEAELK---Q 262 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 33334444444444455555555555555555555555666665555 2222222223322222222222221 1
Q ss_pred HHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch
Q 000822 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1267)
Q Consensus 402 ~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1267)
........+.+.......+....+.|.+.|+.++.-+.-.++ +...+.+.|-+..+...-.++.+|+--
T Consensus 263 rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~lqaSqq----------~~~~L~~EL~~~~~~RDrt~aeLh~aR 331 (546)
T PF07888_consen 263 RLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQLQASQQ----------EAELLRKELSDAVNVRDRTMAELHQAR 331 (546)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111111111111112222333334455555555554444444 666666777666666655555555544
No 36
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=98.18 E-value=0.048 Score=67.23 Aligned_cols=296 Identities=19% Similarity=0.178 Sum_probs=152.3
Q ss_pred hhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1267)
Q Consensus 303 s~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL 382 (1267)
+.|..||.++-..=+=|.-++.+++-+|-++.. +..+ +.+++-.+.|...-.+=..|..++=-....|..++.++
T Consensus 409 QRva~lEkKvqa~~kERDalr~e~kslk~ela~-~l~~----DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ 483 (961)
T KOG4673|consen 409 QRVATLEKKVQALTKERDALRREQKSLKKELAA-ALLK----DELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKI 483 (961)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-hhhh----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 677788877776666666677777766654332 1111 22333333344444444444444433444455555555
Q ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHH
Q 000822 383 KTQE-------AQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAEL 455 (1267)
Q Consensus 383 ~e~e-------aef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El 455 (1267)
++.. ..|..|.++...++.-+..-+..=.-+..+|..+.......++.+..++....-.++ -+
T Consensus 484 ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~----------~~ 553 (961)
T KOG4673|consen 484 KEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA----------QA 553 (961)
T ss_pred hhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH----------HH
Confidence 5544 234444444444444444444444444455555555555555555554443322232 11
Q ss_pred HHHHhcHHHHhh--hhHHHHH--HhccchHHHHHHHHHhhHHHHHHHHHH-----------hhHhhhHHHHHHHHHHHHH
Q 000822 456 ELKLKSLEEQHN--ETGAAAA--TASQRNLELEDIIRASNEAAEEAKSQL-----------RELEPRFIAAEQRSVELEQ 520 (1267)
Q Consensus 456 ~~~~k~lee~~~--~he~~~~--~~~qk~~EL~~qi~~~~~~~Ek~k~~l-----------~~l~~~~~~~Ekk~keLE~ 520 (1267)
.-+..+++.... .-+.++. ++|++|..|--|+..++.++-+...++ ..|+.++.+++.++..+-+
T Consensus 554 ~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q 633 (961)
T KOG4673|consen 554 LAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQ 633 (961)
T ss_pred HHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222222222 1223333 788888888888888888888877776 8899999999999999888
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------HHHHHHHHHHHH
Q 000822 521 QLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE--------------------------------KKQLHDQMNDYK 568 (1267)
Q Consensus 521 QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~E--------------------------------Leele~kleelq 568 (1267)
++..-. .=+-|+|..+...+++....-...++. +......+.=+.
T Consensus 634 ~v~~TT---rPLlRQIE~lQ~tl~~~~tawereE~~l~~rL~dSQtllr~~v~~eqgekqElL~~~~~l~s~~~q~sllr 710 (961)
T KOG4673|consen 634 QVPETT---RPLLRQIEALQETLSKAATAWEREERSLNERLSDSQTLLRINVLEEQGEKQELLSLNFSLPSSPIQLSLLR 710 (961)
T ss_pred hccccc---cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhHHHHHHHhcCCCcchhHHHHHH
Confidence 775322 122334444433333332222222222 222222223333
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH
Q 000822 569 DKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIEL 616 (1267)
Q Consensus 569 kkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eL 616 (1267)
..-+.|...+..-.+|......++..+++++...+++++.+-+..+.+
T Consensus 711 aE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~ 758 (961)
T KOG4673|consen 711 AEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIREL 758 (961)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555556666666655555555555544433
No 37
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=98.17 E-value=0.067 Score=68.64 Aligned_cols=320 Identities=16% Similarity=0.193 Sum_probs=157.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhh
Q 000822 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD-----LTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQ 447 (1267)
Q Consensus 373 ~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~D-----LessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq 447 (1267)
..++.....+..+...|..+..+|+..-....-....++. +...+..+.+...+++..+..+..-+++-+.
T Consensus 694 ~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~k~~~~---- 769 (1174)
T KOG0933|consen 694 EALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKERALKKCED---- 769 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 4444455555666777888888887777776666665543 3333445555555556666666555555555
Q ss_pred hhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000822 448 ALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVEL 527 (1267)
Q Consensus 448 ~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~ 527 (1267)
.+..+-+++.+.-...|.+...+...+..+...++.+...+++.-....-|+.-....+..+..++.++..+..
T Consensus 770 ------~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~ 843 (1174)
T KOG0933|consen 770 ------KISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEK 843 (1174)
T ss_pred ------HHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666666666666666666555555555555555555555555555555555555555555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhh
Q 000822 528 KSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1267)
Q Consensus 528 K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak 607 (1267)
.++.+..++..+...+.........+..++.....++-.....++.+-.............+-....+..++.....-..
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~ 923 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKA 923 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHH
Confidence 55555555555555555444444444444444444444444333333333333333333332222222222222111111
Q ss_pred hhhhhhHHHHHhHHhhhh---hhhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHHHHH
Q 000822 608 MSHQRSIELEDLFQTSHS---KLEGTGKRVNELEL-LLEAEKYRIQELEEQISKLEKKC-EEAEAGSKQYSDKVCELASE 682 (1267)
Q Consensus 608 ~~rqrs~eLeell~~~k~---kLEeae~~leelEe-~LEk~K~RlqELEeqis~LEKK~-k~~eqeLae~~e~l~~Lk~E 682 (1267)
..+.....+... ..|-. .+-...+..=..+. ..-..+.++..+......+++.+ -+....+.........+...
T Consensus 924 ~~~k~v~~l~~k-~~wi~~ek~~fgk~gt~yDf~~~~p~~are~l~~Lq~k~~~l~k~vn~~~m~mle~~E~~~~~lk~k 1002 (1174)
T KOG0933|consen 924 NARKEVEKLLKK-HEWIGDEKRLFGKKGTDYDFESYDPHEAREELKKLQEKKEKLEKTVNPKNMDMLERAEEKEAALKTK 1002 (1174)
T ss_pred HHHHHHHHHHHh-ccchhHHHHhhcCCCCccccccCCHhHHHHHHHHhhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 111111111110 01110 00000000000000 02233566667777777777776 44455566666666666666
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 000822 683 LEAFQARTSSLEVALQMANDK 703 (1267)
Q Consensus 683 LE~lekE~relEt~Lee~rek 703 (1267)
+..+..+-..+...+..+..+
T Consensus 1003 ~~~Ie~Dk~kI~ktI~~lDe~ 1023 (1174)
T KOG0933|consen 1003 KEIIEKDKSKIKKTIEKLDEK 1023 (1174)
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 666666655555555444444
No 38
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=98.10 E-value=0.055 Score=67.87 Aligned_cols=127 Identities=19% Similarity=0.243 Sum_probs=84.1
Q ss_pred hhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVL 382 (1267)
Q Consensus 303 s~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL 382 (1267)
..|.++++.+..-+.-.+.+...|..+..+...-+..+..+......++..+-.....+...-..|+.....+...-..+
T Consensus 105 ~~~~~~~~~l~~~e~~~~~i~~~l~~l~~~e~~nr~~v~~l~~~y~~~rk~ll~~~~~~G~a~~~le~~l~~~e~~f~~f 184 (569)
T PRK04778 105 HEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSFGPALDELEKQLENLEEEFSQF 184 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777778888888888777777777777777777777777776666655555533333332222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHH-hhh
Q 000822 383 KTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKL-RNS 434 (1267)
Q Consensus 383 ~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL-~~~ 434 (1267)
.++.. ..+....+.-...+...+.+|..-|..+|....++...+ +..
T Consensus 185 ~~l~~-----~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql 232 (569)
T PRK04778 185 VELTE-----SGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQL 232 (569)
T ss_pred HHHhc-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 22111 134566677777788888888888888888877777666 444
No 39
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=98.00 E-value=0.047 Score=62.96 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=56.4
Q ss_pred HHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 497 AKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSERE--------VREFSEKLSQLSTALKEVEEEKKQLHDQMNDYK 568 (1267)
Q Consensus 497 ~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~ere--------i~eLeeqiskLqsEL~elE~ELeele~kleelq 568 (1267)
.|..|..|...|+.+=.+-..|+.+...|..++..+... ...|...+..++..|.....+...+...+..+.
T Consensus 2 EK~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~ 81 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLK 81 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHH
Confidence 355666677777766666666666666655555544443 333455555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 569 DKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 569 kkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
..+..+...+.........++.++..++..+..
T Consensus 82 ~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~ 114 (312)
T PF00038_consen 82 EELEDLRRKYEEELAERKDLEEELESLRKDLDE 114 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 555555555555555555555555555544443
No 40
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.98 E-value=0.025 Score=69.47 Aligned_cols=234 Identities=13% Similarity=0.189 Sum_probs=149.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 333 ESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMAD 412 (1267)
Q Consensus 333 ~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~D 412 (1267)
...+..-++...+..+.+...|.+...++.++..++++-...+......+......+..+..++..++..+..++..+.+
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33444455555566666666777777788888888888888888999999999999999999999999999999999999
Q ss_pred hHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch-----HHHHHHH
Q 000822 413 LTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN-----LELEDII 487 (1267)
Q Consensus 413 LessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~-----~EL~~qi 487 (1267)
|......|...+..+...++.--..+...+. .+..|+..|+=.-..|+..+.+.+-++ ....+.+
T Consensus 174 Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n----------~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F 243 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLDDETLLRVDLQN----------RVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYF 243 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHH
Confidence 9999988888888887777665555555555 667777888888888888888877776 2333333
Q ss_pred HH-hhHHHHHHHHHH-hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 488 RA-SNEAAEEAKSQL-RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMN 565 (1267)
Q Consensus 488 ~~-~~~~~Ek~k~~l-~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kle 565 (1267)
.+ ++.++...+.+- ......+.+.+.. +...|.+++....-..-..+...+.+..++..|..+...++.++....
T Consensus 244 ~~eL~~Ai~eiRaqye~~~~~nR~diE~~---Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~ 320 (546)
T KOG0977|consen 244 KNELALAIREIRAQYEAISRQNRKDIESW---YKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNS 320 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccCh
Confidence 33 444443333333 1222222322222 333444444433333344444444455555555555555555555444
Q ss_pred HHHHHHHHHHHHHH
Q 000822 566 DYKDKITQLELILN 579 (1267)
Q Consensus 566 elqkkIs~LEsqLk 579 (1267)
.+.+.|..|..++.
T Consensus 321 ~L~~~I~dL~~ql~ 334 (546)
T KOG0977|consen 321 ALEKRIEDLEYQLD 334 (546)
T ss_pred hHHHHHHHHHhhhh
Confidence 55555544444433
No 41
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=97.96 E-value=0.12 Score=64.06 Aligned_cols=125 Identities=26% Similarity=0.283 Sum_probs=63.3
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
+.++|..+|.++.........++..+......+.....+ -..+|+|--..+..-...+.+....+..|.+-|.....
T Consensus 294 L~~eL~~~K~slq~~~~tq~~le~~lq~~~k~~~qlt~e---Ke~~~Ee~nk~k~~~s~~v~e~qtti~~L~~lL~~Eqq 370 (786)
T PF05483_consen 294 LLQELEDIKQSLQESESTQKALEEDLQQATKTLIQLTEE---KEAQMEELNKAKAQHSFVVTELQTTICNLKELLTTEQQ 370 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666655554444444432222221111111111 13444444444555556666677777777777766666
Q ss_pred HHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHh
Q 000822 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQH 466 (1267)
Q Consensus 402 ~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~ 466 (1267)
.....++++.-+. -+|...-.+|+++.... ...+- +|+.++++|.+..
T Consensus 371 r~~~~ed~lk~l~---~eLqkks~eleEmtk~k----~~ke~----------eleeL~~~L~e~q 418 (786)
T PF05483_consen 371 RLKKNEDQLKILT---MELQKKSSELEEMTKQK----NNKEV----------ELEELKKILAEKQ 418 (786)
T ss_pred HHHHhHHHHHHHH---HHHHHhhHHHHHHHHHh----hhhHH----------HHHHHHHHHHHHH
Confidence 6666666555555 44444444555444333 22233 6666666666543
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=97.87 E-value=0.1 Score=60.30 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=34.3
Q ss_pred HHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000822 328 LIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLK 383 (1267)
Q Consensus 328 ~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~ 383 (1267)
.+...+.+++..++.+....+.+..++..+..++.++..+++++...+..+...|.
T Consensus 51 ~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~ 106 (312)
T PF00038_consen 51 MYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELE 106 (312)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445566666666666666667777777777777777777666444444433333
No 43
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.86 E-value=0.22 Score=63.93 Aligned_cols=172 Identities=24% Similarity=0.376 Sum_probs=99.6
Q ss_pred HHHHHHHhHHHHHhhhhHhhh----hhHhHHHHHHhhhhhhhHHHHH-hccch------hhHHHHHH-------------
Q 000822 255 EVEGQMASLQEELKGLNEKIS----EKEKVEEELKRSNTEISAIQEE-LGLSK------LQLLDLEQ------------- 310 (1267)
Q Consensus 255 ~~e~~~~~l~ee~~~~~d~~~----~~~k~ee~~~~~~~~l~~~ee~-~~l~K------s~l~dLE~------------- 310 (1267)
..+=++++|++++-+-..+-+ -+++|..-+.+--.+|+.+.=+ ..+.. ..|..|++
T Consensus 304 ~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~s 383 (1200)
T KOG0964|consen 304 KLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYS 383 (1200)
T ss_pred hhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 556677777777765544332 2334555555555555555544 33332 55566665
Q ss_pred HhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000822 311 RFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS 390 (1267)
Q Consensus 311 rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~ 390 (1267)
+|.+.+---+=.+-+|..+++.....++..+-++..+..++..+.++.+++..+..-|. .....+.+..+.+-
T Consensus 384 qFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~-------e~~~r~~~~~~~~~ 456 (1200)
T KOG0964|consen 384 QFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSIN-------ETKGRMEEFDAENT 456 (1200)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh-------hhhhHHHHHHHHHH
Confidence 23333333344677788888888888888888888888888888887777777777662 34444555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhh
Q 000822 391 NVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRN 433 (1267)
Q Consensus 391 eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~ 433 (1267)
.+..+++.+-..+..+=..=..|.+.|..+.+....-+..|+.
T Consensus 457 ~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~L~~ 499 (1200)
T KOG0964|consen 457 ELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKNLRA 499 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555444444444444444444444444433
No 44
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.84 E-value=0.26 Score=63.94 Aligned_cols=117 Identities=16% Similarity=0.244 Sum_probs=67.1
Q ss_pred hHHHHHHhhhhhhhHHHHH--hccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Q 000822 279 KVEEELKRSNTEISAIQEE--LGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHA 356 (1267)
Q Consensus 279 k~ee~~~~~~~~l~~~ee~--~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ 356 (1267)
++..+...++...+++..- +..+-+.+.+|+.+|.--.. +-..-+-..+++..+...+..|+.+|..
T Consensus 1175 ~L~~rt~rl~~~A~~l~~tGv~gay~s~f~~me~kl~~ir~-----------il~~~svs~~~i~~l~~~~~~lr~~l~~ 1243 (1758)
T KOG0994|consen 1175 ELALRTHRLINRAKELKQTGVLGAYASRFLDMEEKLEEIRA-----------ILSAPSVSAEDIAQLASATESLRRQLQA 1243 (1758)
T ss_pred HHHHHHHHHHHHHHHhhhccCchhhHhHHHHHHHHHHHHHH-----------HhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 44555777777765543332 3333344556777777777778888887
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 357 KVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEAL 406 (1267)
Q Consensus 357 ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~kesl 406 (1267)
..+-|..+..+|.+=..........|..++..|..|..-+..++.....|
T Consensus 1244 ~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~i 1293 (1758)
T KOG0994|consen 1244 LTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKI 1293 (1758)
T ss_pred HHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77777777777744444444444555555555555555555555444444
No 45
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.82 E-value=0.19 Score=62.04 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=35.7
Q ss_pred hhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000822 808 ESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYE-EQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQR 881 (1267)
Q Consensus 808 k~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele-~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~ 881 (1267)
+|-..++..=++++..+.|...|..+|.+. +|.- .+|.+++|.+..+++-+ +.++.-..+++.
T Consensus 375 ~L~~el~~~e~~lqEer~E~qkL~~ql~ke----~D~n~vqlsE~~rel~Elks~l-------rv~qkEKEql~~ 438 (546)
T PF07888_consen 375 KLSRELQMLEEHLQEERMERQKLEKQLGKE----KDCNRVQLSENRRELQELKSSL-------RVAQKEKEQLQE 438 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 555666666667777777777666665432 2222 36666666666655555 444444444444
No 46
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.26 Score=63.53 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----HHHHHhHhhHHH
Q 000822 348 ADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVS---NVNEELDKVSKEKEALE-----AAMADLTGNIAR 419 (1267)
Q Consensus 348 ~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~---eL~eELe~lr~~keslE-----k~i~DLessiee 419 (1267)
.....-|.+++..+.++..=+++++... ..++++-...|. .+..+|+.+..-.-+.+ ..+..+.-.+.+
T Consensus 179 e~A~ktiekKetKlkEi~~lL~eeI~P~---l~KLR~Ers~~lE~q~~~~dle~l~R~~ia~eY~~~~~~~~~~~~~i~e 255 (1174)
T KOG0933|consen 179 EAAEKTIEKKETKLKEINTLLREEILPR---LEKLREERSQYLEYQKINRDLERLSRICIAYEYLQAEEKRKNSAHEIEE 255 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344457777777777777776665554 344444444444 44466666665443332 333333333333
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHH
Q 000822 420 MKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKS 499 (1267)
Q Consensus 420 L~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~ 499 (1267)
+ .+.+......|.|+.. ++.-+-+.+.+-+...++.....- --|+++++....-.=....
T Consensus 256 ~-------~~~i~~l~e~~~k~~~----------ei~~le~~ikei~~~rd~em~~~~---~~L~~~~~~~~~~~tr~~t 315 (1174)
T KOG0933|consen 256 M-------KDKIAKLDESLGKTDK----------EIESLEKEIKEIEQQRDAEMGGEV---KALEDKLDSLQNEITREET 315 (1174)
T ss_pred H-------HHHHHHHHHHHHhHHH----------HHHHHHHHHHHHHHHHHHHhchhh---hhHHHHHHHHHHHHHHHHH
Confidence 3 3333344444444455 555555666655554444332222 4455555554444444444
Q ss_pred HHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 500 QLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI 571 (1267)
Q Consensus 500 ~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkI 571 (1267)
.+.-....+...+.+...+...+.+....+..-...+....+-...++.........+...+..++.+...+
T Consensus 316 ~l~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~ 387 (1174)
T KOG0933|consen 316 SLNLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGL 387 (1174)
T ss_pred HHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555555555555555555555555555555555555555555555555555555555555544444444433
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.81 E-value=0.073 Score=65.62 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=104.1
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 000822 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSE 533 (1267)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~e 533 (1267)
|+...++.|++.+..+ ..++-.|..+..-+..++..+...+........+...+..-++.++.+..-+.
T Consensus 93 El~~ar~~l~e~~~~r-----------a~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~k 161 (546)
T KOG0977|consen 93 ELATARKLLDETARER-----------AKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLK 161 (546)
T ss_pred hHHHHHHHHHHHHHHH-----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHH
Confidence 8888888888865544 33444445555556666666666777778888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000822 534 REVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1267)
Q Consensus 534 rei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele 593 (1267)
+.+..+.+.+..++.++..+...|..+...+.+....-..+++..+.|-.++.++.....
T Consensus 162 rr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~ 221 (546)
T KOG0977|consen 162 RRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHK 221 (546)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 999999999999999999999999999999999998888888888888888888875554
No 48
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.66 E-value=0.41 Score=61.05 Aligned_cols=59 Identities=22% Similarity=0.213 Sum_probs=34.1
Q ss_pred hhhHHHHHHHhhhHHHhhhh---hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 302 KLQLLDLEQRFSSKEALITN---LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSE 360 (1267)
Q Consensus 302 Ks~l~dLE~rl~~ee~lrKe---~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~E 360 (1267)
+.|++||.++|.-...-|++ --.++++.+....++++=+.++-..+..|+.+|.+-+.+
T Consensus 230 r~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa~Lqrel~raR~e 291 (1243)
T KOG0971|consen 230 RAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQADLQRELKRARKE 291 (1243)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888777655543322 223455555666666666666666566665555544443
No 49
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.65 E-value=0.5 Score=61.88 Aligned_cols=113 Identities=22% Similarity=0.324 Sum_probs=87.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 480 NLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRS-VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKK 558 (1267)
Q Consensus 480 ~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~-keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELe 558 (1267)
..++...+-..-....+.|...+.+.....+++... ..+..++.+...++..+..++..++..+..|..++..+...+.
T Consensus 353 ~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~ 432 (1074)
T KOG0250|consen 353 VNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAK 432 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666677777778888888888888888877 8888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1267)
Q Consensus 559 ele~kleelqkkIs~LEsqLk~LqsRireLEEel 592 (1267)
..+.........|.++...+...+..++.|..-.
T Consensus 433 ~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k 466 (1074)
T KOG0250|consen 433 EEEEEKEHIEGEILQLRKKIENISEELKDLKKTK 466 (1074)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8777777777777777777777776666665443
No 50
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.57 E-value=0.44 Score=59.22 Aligned_cols=309 Identities=18% Similarity=0.159 Sum_probs=173.6
Q ss_pred hhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch---HHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Q 000822 446 SQALANNAELELKLKSLEEQHNETGAAAATASQRN---LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQL 522 (1267)
Q Consensus 446 sq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~---~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL 522 (1267)
+++.+--.+|.+..+.+...+..-+++-+-+.+-. +.|++-..++.-..=+-|+.=.+....+.++.+++..|+..+
T Consensus 339 ~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva~lEkKv 418 (961)
T KOG4673|consen 339 SDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVATLEKKV 418 (961)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence 33344445666666666666555555444433322 555554444333333333444677888999999999999999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 000822 523 NLVELKSSDSEREVREFSEKLSQ--LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSA 600 (1267)
Q Consensus 523 ~eLq~K~~e~erei~eLeeqisk--LqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLe 600 (1267)
..+....+.+.+++..+...+.. ++.+|.++...|..+...-+.+.+++-.-...|+.|..+++..+--.....+.+.
T Consensus 419 qa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~K~ge~i~ 498 (961)
T KOG4673|consen 419 QALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEEKKGELIT 498 (961)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHH
Confidence 99999999999999876655432 2357888899999999999999999999999999888888877755554444444
Q ss_pred hHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 000822 601 EDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELA 680 (1267)
Q Consensus 601 E~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk 680 (1267)
.++.-.+.++...+.-+ +.+ ..+..-+..+..++....+.+.+.+
T Consensus 499 ~L~sE~~~lk~il~~Ke------------------e~E-----------------k~~~E~I~k~~ae~~rq~~~~~~sr 543 (961)
T KOG4673|consen 499 KLQSEENKLKSILRDKE------------------ETE-----------------KLLQETIEKHQAELTRQKDYYSNSR 543 (961)
T ss_pred HHHHHHHHHHHHhhhHH------------------HHH-----------------HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 42222211111111100 000 0011111222222223333333333
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 000822 681 SELEAFQARTSSLEVALQMANDKERELT-ESLNAAADEKRKLQDTSNGYNEKLAEAE----NLLELLRNDLNMTQERLES 755 (1267)
Q Consensus 681 ~ELE~lekE~relEt~Lee~rek~reL~-eqleevek~k~~LE~EieElkeqLeElE----~~Le~LR~El~l~q~k~es 755 (1267)
.-++.++...+.....+..++..+..-+ -..+.+...-.-|=+++++++..|.-.+ ++-+-+|-++.-++.+++.
T Consensus 544 ~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqa 623 (961)
T KOG4673|consen 544 ALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQA 623 (961)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333332110000 0011222222233334444444444333 3334677777777777777
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 000822 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQAT 792 (1267)
Q Consensus 756 iE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~ 792 (1267)
-|++-+.. -.++-++-+-+.+||+.|+++|...+
T Consensus 624 aE~R~eel---~q~v~~TTrPLlRQIE~lQ~tl~~~~ 657 (961)
T KOG4673|consen 624 AERRCEEL---IQQVPETTRPLLRQIEALQETLSKAA 657 (961)
T ss_pred HHHHHHHH---HhhccccccHHHHHHHHHHHHHhhhh
Confidence 77777666 56666777889999999999997653
No 51
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=97.55 E-value=0.27 Score=56.28 Aligned_cols=228 Identities=19% Similarity=0.219 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 672 YSDKVCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQ 750 (1267)
Q Consensus 672 ~~e~l~~Lk~ELE~lekE~relEt-~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q 750 (1267)
+...+..++-+|+.+.......+. .+..... +....+++.+.++-=+ +-+...+..-.+.|..|..+-.++.
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei----~Kekn~~Lqk~lKLne---E~ltkTi~qy~~QLn~L~aENt~L~ 76 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEI----LKEKNDDLQKSLKLNE---ETLTKTIFQYNGQLNVLKAENTMLN 76 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHhhhH---HHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 456777888888888777777666 3333322 1122222222221111 1233334444556667777777888
Q ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHH---HhhHhhHHHHHHHHH---------
Q 000822 751 ERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHE---SLMRESEMKLQDALA--------- 818 (1267)
Q Consensus 751 ~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e---~~~kk~E~~Lqeale--------- 818 (1267)
++++ -|+....+ ++++++.-+++-+-|..=|+ ..++++|--++++-|
T Consensus 77 SkLe-~EKq~ker--------------------LEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkm 135 (305)
T PF14915_consen 77 SKLE-KEKQNKER--------------------LETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKM 135 (305)
T ss_pred HHHH-HhHHHHHH--------------------HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHh
Confidence 8877 44433332 23444444444333333222 567888888888666
Q ss_pred --hhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchh
Q 000822 819 --NITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSE 896 (1267)
Q Consensus 819 --~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e 896 (1267)
.+..+.+--..|..+|-+.++.++.|+..+++++-.+..-.--++.++-.|.+.+.++++++.-.-.....++-.+..
T Consensus 136 n~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~K 215 (305)
T PF14915_consen 136 NSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGK 215 (305)
T ss_pred cchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 223444444677889999999999999999999966665555566777788999999999999888888888777777
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 000822 897 NELLVETNNQLKSKVAELQELLDSAISEKEA 927 (1267)
Q Consensus 897 ~~~l~~~~~~Lesei~eLqe~Le~a~~ere~ 927 (1267)
..++-++...|+++-.=|+..|+.|+.--..
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~ 246 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADN 246 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999865433
No 52
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.54 E-value=0.00019 Score=91.75 Aligned_cols=66 Identities=29% Similarity=0.426 Sum_probs=0.0
Q ss_pred CcchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 000822 86 SSSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQ 154 (1267)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~ 154 (1267)
+.+..++.+..-.|--|+-++..+....++..- .+..++..+..++.....++.+|+.....+...
T Consensus 57 ~~~~~e~~~~k~~l~~Le~e~~~~~~e~~~~~~---~le~~~~~l~~~~~~~~~~~~ele~~~~~l~~~ 122 (722)
T PF05557_consen 57 SEERAELIELKAQLNQLEYELEQLKQEHERAQL---ELEKELRELQRQLEREFKRNQELEARLKQLEER 122 (722)
T ss_dssp ---------------------------------------------------------------------
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334457777777888888888887777655432 222334444445555555555555544444443
No 53
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=97.50 E-value=0.76 Score=59.98 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=93.3
Q ss_pred HHHHHHhhhhhhhhHhHHHhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000822 786 RVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEEL 862 (1267)
Q Consensus 786 ~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~El 862 (1267)
..|.+.+-...+.+ +....++.=|++ -|..++.+.++|..-++.--++.+++.+....|.+|.+....++.-+
T Consensus 1511 eqi~~L~~~I~e~v----~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai 1586 (1758)
T KOG0994|consen 1511 EQIQQLTGEIQERV----ASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAI 1586 (1758)
T ss_pred HHHHHHHHHHHHHH----HhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555666 666677777776 56677777778776666667788888888888888888888888777
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 863 DSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEKEATGQQ 931 (1267)
Q Consensus 863 e~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~ 931 (1267)
..+.+-++.+++-++.++......-.--.....+...|+..+..|.-..-..-.+.+.++.-
T Consensus 1587 -------~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~ 1648 (1758)
T KOG0994|consen 1587 -------QGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKT 1648 (1758)
T ss_pred -------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 66666667777766666665533222333344788888999988888777766666666633
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=97.49 E-value=0.61 Score=58.68 Aligned_cols=205 Identities=20% Similarity=0.277 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000822 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSR 794 (1267)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~ 794 (1267)
-..+.........+...|..+......+..+++-+...-...++++..- ..+...++.+.+.+......+..-..-
T Consensus 298 ~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~----~~l~~~l~~l~~~~~~~~~~i~~~~~~ 373 (560)
T PF06160_consen 298 VEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQSYTLNHNELEIV----RELEKQLKELEKRYEDLEERIEEQQVP 373 (560)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCcC
Confidence 3344444455555555555555555555555554444433223322222 224445555555555555555554444
Q ss_pred hhhhhHhHHHhhHhhH------HHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHH----------------
Q 000822 795 NSELESLHESLMRESE------MKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAA---------------- 852 (1267)
Q Consensus 795 ~~e~~~~~e~~~kk~E------~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~---------------- 852 (1267)
=+.+..-.+...+.++ .++.+.|.++..-+..|+ ++|.++...|....+.+.-.+
T Consensus 374 yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar---~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~ 450 (560)
T PF06160_consen 374 YSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAR---EKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVS 450 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4444433333333322 223336666666666777 888888888887777665544
Q ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHH----HHHHHHHHHHHHHHHH
Q 000822 853 GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKV----AELQELLDSAISEKEA 927 (1267)
Q Consensus 853 rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei----~eLqe~Le~a~~ere~ 927 (1267)
.....+...+.+....+....+....+...++.+.... +.+..++.|+++.-.+-.+- .++...|..|+.-.+.
T Consensus 451 ~~i~~l~~~L~~~pinm~~v~~~l~~a~~~v~~L~~~t-~~li~~A~L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~ 528 (560)
T PF06160_consen 451 DEIEELSDELNQVPINMDEVNKQLEEAEDDVETLEEKT-EELIDNATLAEQLIQYANRYRSDNPEVDEALTEAEDLFRN 528 (560)
T ss_pred HHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHh
Confidence 66677777787777788888999999999999998888 88888898887776665555 5666666666544443
No 55
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=97.43 E-value=0.98 Score=59.69 Aligned_cols=156 Identities=20% Similarity=0.239 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHH
Q 000822 385 QEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEE 464 (1267)
Q Consensus 385 ~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee 464 (1267)
....+......+...+..+..++..+.++...+..+..... .+.-.+..+..+++.|++
T Consensus 492 ~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~---------------------~~~~~~~kv~~~rk~le~ 550 (1317)
T KOG0612|consen 492 LQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKND---------------------NAADSLEKVNSLRKQLEE 550 (1317)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHhhHHHHHHHHHH
Confidence 44555566666666666666666666666633333321111 122223355667777776
Q ss_pred HhhhhHHHHHHhcc---chHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000822 465 QHNETGAAAATASQ---RNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSE 541 (1267)
Q Consensus 465 ~~~~he~~~~~~~q---k~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLee 541 (1267)
.+..--+.++...+ .+.++..+|++........-..+..++..+.......+.+-.-......+...+...+.++..
T Consensus 551 ~~~d~~~e~~~~~kl~~~~~e~~~~iq~~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~ 630 (1317)
T KOG0612|consen 551 AELDMRAESEDAGKLRKHSKELSKQIQQELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKE 630 (1317)
T ss_pred hhhhhhhhHHHHhhHhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555544443333 337777777774444444444445555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000822 542 KLSQLSTALKEVEEEKKQLH 561 (1267)
Q Consensus 542 qiskLqsEL~elE~ELeele 561 (1267)
.++.+++.+.....++...+
T Consensus 631 ~i~sL~~~~~~~~~~l~k~~ 650 (1317)
T KOG0612|consen 631 EISSLEETLKAGKKELLKVE 650 (1317)
T ss_pred HHHHHHHHHHhhhhHHHHHH
Confidence 55555555555444444333
No 56
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=97.41 E-value=0.89 Score=58.92 Aligned_cols=260 Identities=16% Similarity=0.175 Sum_probs=126.8
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 332 SESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1267)
Q Consensus 332 s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~ 411 (1267)
.-.|+.+....++..|..|+.+++.|-+-+-.+...| ....++|..+..+....-....++..-++
T Consensus 171 ~~~hL~velAdle~kir~LrqElEEK~enll~lr~eL--------------ddleae~~klrqe~~e~l~ea~ra~~yrd 236 (1195)
T KOG4643|consen 171 KNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNEL--------------DDLEAEISKLRQEIEEFLDEAHRADRYRD 236 (1195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3456777777777666666666666554444333333 33333333333333333333333333333
Q ss_pred HhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch--HHHHHHHHH
Q 000822 412 DLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN--LELEDIIRA 489 (1267)
Q Consensus 412 DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~--~EL~~qi~~ 489 (1267)
.+..-...+...+....+.+... +|-| ++=.||...-+.|-+.-.=-++++.-+|.++ ..|+.+|=+
T Consensus 237 eldalre~aer~d~~ykerlmDs--~fyk---------dRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiq 305 (1195)
T KOG4643|consen 237 ELDALREQAERPDTTYKERLMDS--DFYK---------DRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQ 305 (1195)
T ss_pred HHHHHHHhhhcCCCccchhhhhh--HHHH---------HHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHH
Confidence 33332222222221111111111 1111 1112344444445555555566666677666 777777777
Q ss_pred hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH--------------HHHHHHH-HHHHHHHHHHHHH
Q 000822 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSER--------------EVREFSE-KLSQLSTALKEVE 554 (1267)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~er--------------ei~eLee-qiskLqsEL~elE 554 (1267)
.++++-....+.+..+...+.+...+..|.-+-..+.....-... +...+.. +.=++--+...+-
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~q~eqL~~~~ellq~~se~~E~en~Sl~~e~eqLts~ralkllLEnrrlt 385 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQVQKEQLDGQMELLQIFSENEELENESLQVENEQLTSDRALKLLLENRRLT 385 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhhcchhhhhhhHHHHHHHhhhHHHHHHHHHhHHHH
Confidence 777766666666555555555555555544444333332222211 1111111 0001111112222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHH
Q 000822 555 EEKKQL-HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIEL 616 (1267)
Q Consensus 555 ~ELeel-e~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eL 616 (1267)
..+.++ .+.++....+...+++.-+.++-.+..|++.++.+..++.+.++..+.+......+
T Consensus 386 ~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl 448 (1195)
T KOG4643|consen 386 GTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKL 448 (1195)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 233333 23455555666667777777888888888888888888888776666655444333
No 57
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.41 E-value=0.055 Score=67.20 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhh
Q 000822 387 AQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1267)
Q Consensus 387 aef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1267)
..+..+..+++.+......+...+..+...+..+..+...+...|..+...+.+.+.
T Consensus 213 ~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~ 269 (562)
T PHA02562 213 ENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKS 269 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666666666666666666666666666666666666555
No 58
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=97.33 E-value=0.002 Score=82.70 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000822 523 NLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELR 593 (1267)
Q Consensus 523 ~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele 593 (1267)
..+..+++.+..++..+...+..+..++..+...+..+...+......+..|+.++..+...+..|...++
T Consensus 353 ~~L~ek~g~~~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~ 423 (722)
T PF05557_consen 353 ASLTEKLGSLQSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLK 423 (722)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444333
No 59
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=1 Score=57.36 Aligned_cols=101 Identities=22% Similarity=0.240 Sum_probs=44.6
Q ss_pred HHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHH
Q 000822 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLT 1101 (1267)
Q Consensus 1022 ~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~ 1101 (1267)
++++||-+..-++....-+..+..-+..+-.-.++.+..+...+..|+.+ .++.. +.++....++. ...
T Consensus 525 ~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~-----~ek~~--~~le~i~~~~~----e~~ 593 (698)
T KOG0978|consen 525 KIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIE-----LEKSE--AKLEQIQEQYA----ELE 593 (698)
T ss_pred HHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH--HHHHHHHHHHH----HHH
Confidence 45555555555555444444433333322223345555555555555555 22222 21111111222 222
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000822 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQ 1133 (1267)
Q Consensus 1102 ~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~ 1133 (1267)
.++.-.+-+..-++|+..+++-++..+++.--
T Consensus 594 ~ele~~~~k~~rleEE~e~L~~kle~~k~~~~ 625 (698)
T KOG0978|consen 594 LELEIEKFKRKRLEEELERLKRKLERLKKEES 625 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 33334444444456666666666666655543
No 60
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.88 Score=57.39 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=80.7
Q ss_pred HHHhhhhHHHHHHhccchHHHHHHHHH----hhHHHHHHHHHHhhHhhhHHHHHHHHHH-HH-HHHHHHHHhhhhHHHHH
Q 000822 463 EEQHNETGAAAATASQRNLELEDIIRA----SNEAAEEAKSQLRELEPRFIAAEQRSVE-LE-QQLNLVELKSSDSEREV 536 (1267)
Q Consensus 463 ee~~~~he~~~~~~~qk~~EL~~qi~~----~~~~~Ek~k~~l~~l~~~~~~~Ekk~ke-LE-~QL~eLq~K~~e~erei 536 (1267)
++.......+-..-|++..||+.+++- -..+.|.-|..+..-+.++.++++.++- .| ....++..+...-...+
T Consensus 353 eE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~i 432 (1118)
T KOG1029|consen 353 EEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEIERREAAREELEKQRQLEWERARRQEMLNQKNREQEWI 432 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 333344444455556666777777765 4556666666666666665555544321 11 12334444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhh
Q 000822 537 REFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRAN 607 (1267)
Q Consensus 537 ~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak 607 (1267)
-.+..+...+..++..+...+.++..++.+....|......+..+...+.-.-.+...+..+|.+...+.-
T Consensus 433 v~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~ 503 (1118)
T KOG1029|consen 433 VYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQ 503 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666666666666666666666666655555555555555555555555433333
No 61
>PRK11637 AmiB activator; Provisional
Probab=97.28 E-value=0.14 Score=62.17 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 343 LDNLLADAKENLHAKVSELEDIKLKLQ 369 (1267)
Q Consensus 343 le~~l~eL~~~l~~ke~El~~l~~kle 369 (1267)
++..+.++..+|.....++..+..++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555553
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.25 E-value=1.4 Score=57.84 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=59.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 000822 685 AFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAG 764 (1267)
Q Consensus 685 ~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~ 764 (1267)
.+..++......+.........+...+..+......+......++..|...-+.++.+..+++.-.+++.+.++..--
T Consensus 738 ~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~H-- 815 (1074)
T KOG0250|consen 738 DLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKRH-- 815 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhh--
Confidence 333445555555555555566666666666666677777777777777777777777777777777777754431111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q 000822 765 LRETDVMEKLKSAEEQLEQQTRVLEQ 790 (1267)
Q Consensus 765 ~~eee~~~k~k~~~~ql~~~~~~LE~ 790 (1267)
-+++.|+....+...++.+..
T Consensus 816 -----yE~~~K~~l~~l~~~E~~~~~ 836 (1074)
T KOG0250|consen 816 -----YEDKLKSRLEELKQKEVEKVN 836 (1074)
T ss_pred -----HHHHHHHhhHHHHHHHHHHHh
Confidence 245555555555555555543
No 63
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.20 E-value=0.22 Score=62.00 Aligned_cols=10 Identities=10% Similarity=0.312 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q 000822 677 CELASELEAF 686 (1267)
Q Consensus 677 ~~Lk~ELE~l 686 (1267)
..++.+++.+
T Consensus 361 ~~l~~ei~~l 370 (562)
T PHA02562 361 KKVKAAIEEL 370 (562)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 64
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.10 E-value=2.3 Score=57.31 Aligned_cols=80 Identities=20% Similarity=0.284 Sum_probs=56.5
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLS-QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQ 580 (1267)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqis-kLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~ 580 (1267)
..++..+......++.++..+..++.....++.-...+...++ .....+......+....+.+..|...+..+...+..
T Consensus 570 ~~le~~~~~~~~~~~~~~ek~~~l~~~~~~~e~~~~~~~~~~e~~~~e~~k~~~~~lk~~sgt~~~~~~~le~l~~eie~ 649 (1294)
T KOG0962|consen 570 RSLEKELHKLSKEIQEMEERLRMLQLEEQSLEINRNGIRKDLEDRKEEELKSKEFFLKDESGTIDEYLDLLERLKGEIEK 649 (1294)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHH
Confidence 3677778888888888888888888888888888888887777 666666666666666655555555555555555543
Q ss_pred H
Q 000822 581 S 581 (1267)
Q Consensus 581 L 581 (1267)
.
T Consensus 650 ~ 650 (1294)
T KOG0962|consen 650 A 650 (1294)
T ss_pred H
Confidence 3
No 65
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=97.09 E-value=1.6 Score=55.43 Aligned_cols=177 Identities=18% Similarity=0.193 Sum_probs=99.5
Q ss_pred HHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q 000822 812 KLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN 891 (1267)
Q Consensus 812 ~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~ 891 (1267)
.|+......+.+.+|-..|.+++---...|..++..-...+-.+.....+|.+.++.|.++-.++.+++.++.-+.--..
T Consensus 238 ~Lqqy~a~~q~l~~e~e~L~~q~l~Qtql~d~lq~eE~q~~~~~E~~~~ELq~~qe~Lea~~qqNqqL~~qls~~~~~~e 317 (617)
T PF15070_consen 238 HLQQYVAAYQQLASEKEELHKQLLQQTQLMDRLQHEESQGKVQLEMAHQELQEAQEHLEALSQQNQQLQAQLSLMALPGE 317 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcCCCC
Confidence 44444444455666666555554332222455554333333444566688888888889999999999988875433211
Q ss_pred c---------------------cchhhhH----HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 000822 892 N---------------------SSSENEL----LVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1267)
Q Consensus 892 ~---------------------~~~e~~~----l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~ 946 (1267)
. ++..... +......++.+-++|...|..-...+......+..+..........+
T Consensus 318 g~~~~~~~~~ee~~~~~~~ipEd~es~E~m~~f~~~a~~~~eeEr~~L~~qL~eqk~~~q~L~h~va~~q~e~e~~a~~~ 397 (617)
T PF15070_consen 318 GDGLESESEEEEAPQPMPSIPEDLESREAMVEFFNSALAQAEEERARLRRQLEEQKVQCQHLAHQVASAQKEPEAEAPAP 397 (617)
T ss_pred CcccccccccccccCcCcccccccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCc
Confidence 1 1111111 11345566667777777777766655555544443333222221111
Q ss_pred -----HHhhhhhhhhHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhh
Q 000822 947 -----SRALELHSATEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQI 995 (1267)
Q Consensus 947 -----~r~~~l~s~~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~ 995 (1267)
+-..+.|.++-.-++.+++-+.+.+. ++-+|.++...||-.+
T Consensus 398 ~~~~dsV~~E~h~aLq~amekLq~~f~~~~~-------e~adl~e~~e~le~~~ 444 (617)
T PF15070_consen 398 GTGGDSVPGETHQALQEAMEKLQSRFMDLME-------EKADLKERVEKLEHRF 444 (617)
T ss_pred ccCCCCCCccchHHHHHHHHHHHHHHHHHHH-------HHhhHHHHHHHHHHHH
Confidence 11234455566667778888888887 7778888777777644
No 66
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.01 E-value=2.5 Score=56.24 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=9.6
Q ss_pred hcchHHHHHHHHhHHHHHh
Q 000822 250 NVSAKEVEGQMASLQEELK 268 (1267)
Q Consensus 250 ~~~a~~~e~~~~~l~ee~~ 268 (1267)
+...+.+..++.+|...+.
T Consensus 177 ~e~~~~~~~~~e~l~~~~~ 195 (908)
T COG0419 177 KEVIKEAKAKIEELEGQLS 195 (908)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333455555555555555
No 67
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.00 E-value=2.2 Score=55.45 Aligned_cols=150 Identities=13% Similarity=0.245 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000822 655 ISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAE 734 (1267)
Q Consensus 655 is~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeE 734 (1267)
+.....++..+...|+.+...+.....+|+.+....+..++.........+.+...+..+...+..++..+.-....|..
T Consensus 673 ~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~ 752 (1200)
T KOG0964|consen 673 VNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEE 752 (1200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHH
Confidence 33344444444444444444445555555555555555554444444444445444544444444444444444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHH
Q 000822 735 AENLLELLRNDLNMTQERLESIEKDLKAAGLR--ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMK 812 (1267)
Q Consensus 735 lE~~Le~LR~El~l~q~k~esiE~~l~~~~~~--eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~ 812 (1267)
+. ..+.-..+...+++.++-.-=+. ..+-.+.++.+...|+.+...+...++.|.++. .++--+|+-
T Consensus 753 i~-------~~l~~~~~~~~~~e~el~sel~sqLt~ee~e~l~kLn~eI~~l~~kl~~~~~er~~~~----~rk~~le~~ 821 (1200)
T KOG0964|consen 753 IK-------TSLHKLESQSNYFESELGSELFSQLTPEELERLSKLNKEINKLSVKLRALREERIDIE----TRKTALEAN 821 (1200)
T ss_pred HH-------HHHHHHHHHHHhHHHHHhHHHHhhcCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence 44 44444444444444433221000 122356678888889999888888888888877 555455544
Q ss_pred HHH
Q 000822 813 LQD 815 (1267)
Q Consensus 813 Lqe 815 (1267)
|..
T Consensus 822 l~~ 824 (1200)
T KOG0964|consen 822 LNT 824 (1200)
T ss_pred HHH
Confidence 443
No 68
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=96.99 E-value=1.9 Score=54.52 Aligned_cols=172 Identities=17% Similarity=0.191 Sum_probs=87.7
Q ss_pred HHhcHHHHhhhhHHHHHHhccch-HHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 000822 458 KLKSLEEQHNETGAAAATASQRN-LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREV 536 (1267)
Q Consensus 458 ~~k~lee~~~~he~~~~~~~qk~-~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei 536 (1267)
..+.|++.+..|..++..+.+-| .+|.. +..+.+..-..|.+++..+...-+.+......-..|...++....++
T Consensus 138 ~q~ELee~q~~Hqeql~~Lt~aHq~~l~s----L~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~l 213 (739)
T PF07111_consen 138 SQRELEEAQRLHQEQLSSLTQAHQEALAS----LTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEEL 213 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 35667788888888888888777 22221 22233333333333333333222222222222223333333333333
Q ss_pred HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHh
Q 000822 537 REFSEKLSQLSTALK----------EVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRA 606 (1267)
Q Consensus 537 ~eLeeqiskLqsEL~----------elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~ra 606 (1267)
..-..-+..++.-|+ .++.+-..+...+..++..-..|......++.|+..|.+-+..-.+++.....-.
T Consensus 214 e~q~tlv~~LR~YvGeq~p~~~~~~~we~Er~~L~~tVq~L~edR~~L~~T~ELLqVRvqSLt~IL~LQEeEL~~Kvqp~ 293 (739)
T PF07111_consen 214 EAQVTLVEQLRKYVGEQVPPEVHSQAWEPEREELLETVQHLQEDRDALQATAELLQVRVQSLTDILTLQEEELCRKVQPS 293 (739)
T ss_pred HHHHHHHHHHHHHHhhhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 333333444444443 3445667777777777788888888888888888888887764444444411111
Q ss_pred hhh-hhhhHHHHHhHHhhhhhhhhhhhh
Q 000822 607 NMS-HQRSIELEDLFQTSHSKLEGTGKR 633 (1267)
Q Consensus 607 k~~-rqrs~eLeell~~~k~kLEeae~~ 633 (1267)
+.. ..-..-...++..|+.+....--.
T Consensus 294 d~Le~e~~~K~q~LL~~WREKVFaLmVQ 321 (739)
T PF07111_consen 294 DPLEPEFSRKCQQLLSRWREKVFALMVQ 321 (739)
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111233345566677666554433
No 69
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=96.90 E-value=1.3 Score=51.19 Aligned_cols=79 Identities=15% Similarity=0.257 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 000822 336 AKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLT 414 (1267)
Q Consensus 336 lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLe 414 (1267)
++....++...-..+...+..+.....+++.++-+=...+..+.....+.+.+|.++.............+-..+..+.
T Consensus 18 lk~~~~e~~ekR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~ 96 (294)
T COG1340 18 LKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELK 96 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444443335555555555555555555554444444444444444444444444444444444444333333333
No 70
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=96.88 E-value=2.3 Score=53.70 Aligned_cols=192 Identities=15% Similarity=0.234 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1267)
+|......+..+......++..+..+...+..+-.....-......+.. -...++|.+-+...
T Consensus 95 rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~-----------------~y~~lrk~ll~~~~ 157 (560)
T PF06160_consen 95 RFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKE-----------------KYRELRKELLAHSF 157 (560)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHhhh
Confidence 4444455555555555555555555554444444443333333333322 45567788888888
Q ss_pred hhHHHHHHhccchHHHHHHHHH-----hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 468 ETGAAAATASQRNLELEDIIRA-----SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1267)
Q Consensus 468 ~he~~~~~~~qk~~EL~~qi~~-----~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeq 542 (1267)
..|.++..+-++...++..+.. ..+...+|+..+..+......++.....+=.-+..++..+- .++.++..-
T Consensus 158 ~~G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P---~ql~eL~~g 234 (560)
T PF06160_consen 158 SYGPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFP---DQLEELKEG 234 (560)
T ss_pred hhchhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH---HHHHHHHHH
Confidence 8899998888888888888887 45566677777777777666666666665555555544332 233333333
Q ss_pred HHHHHHH---HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 543 LSQLSTA---LK--EVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 543 iskLqsE---L~--elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
+.++... +. .....+..+...+......+..| .+......+..+.+.++.+-..++.
T Consensus 235 y~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l--~l~~~~~~~~~i~~~Id~lYd~le~ 296 (560)
T PF06160_consen 235 YREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNL--ELDEVEEENEEIEERIDQLYDILEK 296 (560)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333332 11 23334444444444444444333 2334444555555555555555544
No 71
>PRK11637 AmiB activator; Provisional
Probab=96.83 E-value=0.59 Score=56.73 Aligned_cols=76 Identities=11% Similarity=0.155 Sum_probs=31.1
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 504 LEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1267)
Q Consensus 504 l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk 579 (1267)
+...+..+......++.+...+.....+...+...+.....+.+..+..+...+......+..+......+...|.
T Consensus 175 l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~ 250 (428)
T PRK11637 175 LKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIA 250 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444444444444444444444444444444444444443
No 72
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.82 E-value=3.5 Score=54.92 Aligned_cols=140 Identities=21% Similarity=0.294 Sum_probs=64.4
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhh----HHHHHHHHHHHHHHHHHHHHhh
Q 000822 454 ELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPR----FIAAEQRSVELEQQLNLVELKS 529 (1267)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~----~~~~Ekk~keLE~QL~eLq~K~ 529 (1267)
++..+...+.. +...-..+....+....+...+......++.+...+..+... ....+.+...+...+..++.++
T Consensus 299 e~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 377 (908)
T COG0419 299 EIEELEEELEG-LRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKEL 377 (908)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34443333333 333333444444444444444444444445555555444222 2222333333334444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 000822 530 SDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRI 594 (1267)
Q Consensus 530 ~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~ 594 (1267)
......+..+...+..+...+......+......+.........+...+..+...+..++.....
T Consensus 378 ~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 442 (908)
T COG0419 378 EKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQ 442 (908)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44344444445555555555555555555555555555555555555555555555555555543
No 73
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=96.81 E-value=2.6 Score=53.49 Aligned_cols=189 Identities=20% Similarity=0.253 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 670 KQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMT 749 (1267)
Q Consensus 670 ae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~ 749 (1267)
+.++-.+-..+-..+.|.....+++..-..+-...+.++..+..++..+.+|-..-.+...|+.++-+.+= .+.
T Consensus 333 adirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn~if------~~e 406 (1265)
T KOG0976|consen 333 ADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKNHIF------RLE 406 (1265)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------hhh
Confidence 33333333333334444455555555444444445555555555555555555554444444444433321 112
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhh
Q 000822 750 QERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKS 829 (1267)
Q Consensus 750 q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~ 829 (1267)
+.+-+ +| ...+.+..+...+.-|++.+-..-.+-+-...|++.. |+...++|+--|..=+=.++
T Consensus 407 ~~~~d-he-----------~~kneL~~a~ekld~mgthl~mad~Q~s~fk~Lke~a----egsrrraIeQcnemv~rir~ 470 (1265)
T KOG0976|consen 407 QGKKD-HE-----------AAKNELQEALEKLDLMGTHLSMADYQLSNFKVLKEHA----EGSRRRAIEQCNEMVDRIRA 470 (1265)
T ss_pred hccch-hH-----------HHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHhh----hhhHhhHHHHHHHHHHHHHH
Confidence 22222 22 2344555566667788888888878877777555544 44444444444433333332
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 000822 830 FSEKL---KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKA 890 (1267)
Q Consensus 830 l~e~L---KKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~ 890 (1267)
+-..+ ||.+.+.+.+...+.--.++++-|+.++-. +.=++..++.++.+.-
T Consensus 471 l~~sle~qrKVeqe~emlKaen~rqakkiefmkEeiQe----------thldyR~els~lA~r~ 524 (1265)
T KOG0976|consen 471 LMDSLEKQRKVEQEYEMLKAENERQAKKIEFMKEEIQE----------THLDYRSELSELAHRK 524 (1265)
T ss_pred HhhChhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhhcc
Confidence 22222 999999999999888888999999988844 3445566677776654
No 74
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.79 E-value=2.4 Score=52.61 Aligned_cols=109 Identities=18% Similarity=0.212 Sum_probs=74.7
Q ss_pred HHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000822 310 QRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQV 389 (1267)
Q Consensus 310 ~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef 389 (1267)
.+..+-++.+..+.-|+.+++..+..++--+......+..+...|..+++|+..|....++=-..+... .=+-++|
T Consensus 259 ~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q----~iS~~dv 334 (581)
T KOG0995|consen 259 GKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ----GISGEDV 334 (581)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCHHHH
Confidence 455666666777899999999999999998888999999999999999999999988883222221111 2234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhh
Q 000822 390 SNVNEELDKVSKEKEALEAAMADLTGNIARMKE 422 (1267)
Q Consensus 390 ~eL~eELe~lr~~keslEk~i~DLessieeL~e 422 (1267)
.....+...+......+...++.|...+-.+..
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 555555555555555555555555555544433
No 75
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=96.79 E-value=3 Score=53.73 Aligned_cols=536 Identities=18% Similarity=0.209 Sum_probs=258.9
Q ss_pred hhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHH
Q 000822 303 LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDI---KLKLQEEVNARESVE 379 (1267)
Q Consensus 303 s~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l---~~kleee~~~~~~~~ 379 (1267)
..|.+|+.-+...+........+.+.+......+..+...++.....|+..|..|...=..+ -+.|++|---.....
T Consensus 34 ~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqv 113 (717)
T PF09730_consen 34 QRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQV 113 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555544445555444443221111 234455556666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhh-----hhhhh--hhhhhh-hc
Q 000822 380 AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF-----CKTDS--LLSQAL-AN 451 (1267)
Q Consensus 380 ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~-----~K~e~--~lsq~~-~~ 451 (1267)
..++..+.+|..+.-++..+......+..++.++.. -..=.--.|++.|.+++.++ -|+|. -+|..+ .+
T Consensus 114 s~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~r---Lk~iae~qleEALesl~~EReqk~~LrkEL~~~~~~~~~~~ 190 (717)
T PF09730_consen 114 SVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAAR---LKEIAEKQLEEALESLKSEREQKNALRKELDQHLNIESISY 190 (717)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 888888899999999998888888888888888762 22222335777777776643 12222 111111 11
Q ss_pred hHHHHHHHhcH-------------H--HHhhhhHHHHHHhc-----------cch-------HHHHHHHHHhh-HHHHHH
Q 000822 452 NAELELKLKSL-------------E--EQHNETGAAAATAS-----------QRN-------LELEDIIRASN-EAAEEA 497 (1267)
Q Consensus 452 ~~El~~~~k~l-------------e--e~~~~he~~~~~~~-----------qk~-------~EL~~qi~~~~-~~~Ek~ 497 (1267)
.+-|.--+..+ + +.+..|......+. .+. ---.|++-.+| +-+.|.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lv~DLfSEl~~~EiqKL 270 (717)
T PF09730_consen 191 LSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGNGDNRMSTPRKSESFSPAPSLVSDLFSELNLSEIQKL 270 (717)
T ss_pred ccchhhcccccccccccccccCCCCchhhhcchhhccchhcccccccccCCCCCCCCCCCCCcccchhhhhcchHHHHHH
Confidence 11122211111 0 11111111110000 011 11345555533 457788
Q ss_pred HHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q 000822 498 KSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQL-------HDQMNDYKDK 570 (1267)
Q Consensus 498 k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeel-------e~kleelqkk 570 (1267)
++||..++.-+..+-..+.+...|+...+.-++.....+..+...+.-+..-....+..-..- .....-|...
T Consensus 271 ~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ye~D 350 (717)
T PF09730_consen 271 KQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDYYEVD 350 (717)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccchhhhc
Confidence 888888888887777777777777766666666555555555555555444221111110000 0001223333
Q ss_pred HH---HHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHH
Q 000822 571 IT---QLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYR 647 (1267)
Q Consensus 571 Is---~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~LEk~K~R 647 (1267)
+. -|+.........+..|..++..++..+.....+...... .|+..+......+...+..
T Consensus 351 i~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~----------~~~~e~q~L~ekl~~lek~------- 413 (717)
T PF09730_consen 351 INGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKD----------RLESEVQNLKEKLMSLEKS------- 413 (717)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHh-------
Confidence 32 234566666666666777777666666664443322221 2222222222222221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHH------
Q 000822 648 IQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK-----ERELTESLNAAAD------ 716 (1267)
Q Consensus 648 lqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek-----~reL~eqleevek------ 716 (1267)
..+-...+..|++++..+.....+....+...+.++-.|.-++..+-.++=..+.. .-+.......+..
T Consensus 414 ~re~qeri~~LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHHVC~cNgeTPnRVmLD~yr~~r~~~~~~~~~e 493 (717)
T PF09730_consen 414 SREDQERISELEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHHVCMCNGETPNRVMLDYYRQGRQTRRESSSVE 493 (717)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccHHHHHHHhhhhhhccCCCcc
Confidence 11112344444444444444444444444444444444444333333332222211 0000000000000
Q ss_pred ---------------------------HH----HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Q 000822 717 ---------------------------EK----RKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLE----------- 754 (1267)
Q Consensus 717 ---------------------------~k----~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~e----------- 754 (1267)
.. .-.-.-+++++...-..-+.+..+|.++.-++.-++
T Consensus 494 ~~~~~s~~~~~~~~~~~e~~~~~~~~~~~s~~~s~~~S~~~D~r~ep~~i~nl~~~irdQikhL~~av~~t~e~srq~~~ 573 (717)
T PF09730_consen 494 ERGLSSPILTDRGASSREMITSESGESSPSPSSSCPGSPVSDSRKEPMNIYNLVAIIRDQIKHLQRAVDRTTELSRQRVA 573 (717)
T ss_pred cccccCcccccccccccccccCCCCCCCCCCCCCCCCCccchhccCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 00 000000011111111111222233333332222221
Q ss_pred ------HHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHH-hhhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHh
Q 000822 755 ------SIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQA-TSRNSELESLHESLMRESEMKLQDALANITSRDSEA 827 (1267)
Q Consensus 755 ------siE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e-~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa 827 (1267)
..+.|.... -+++. |+|++.-.=|+..++|-.. .+-+.-|..+.-.+|-|.|..=-=.-++|.+++-|.
T Consensus 574 ~~~~~~~~d~d~e~l---~eqil-KLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnEL 649 (717)
T PF09730_consen 574 SRSSASEADKDKEEL---QEQIL-KLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNEL 649 (717)
T ss_pred ccccCCcccccHHHh---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 123444444 45566 9999999889999999774 555666777777899999977655788888999999
Q ss_pred hhHHHHH------HHHHHH-HHHHHHHHHHHHhHHHHHHHHH
Q 000822 828 KSFSEKL------KNLEGQ-VKMYEEQLAEAAGKYALLKEEL 862 (1267)
Q Consensus 828 ~~l~e~L------KKLE~q-ikele~ql~ea~rk~~~l~~El 862 (1267)
+.|-+-- |.|-+. --+|--|||+.+|+++.++-|-
T Consensus 650 K~LKEDAATFsSlRamFa~RCdEYvtQldemqrqL~aAEdEK 691 (717)
T PF09730_consen 650 KALKEDAATFSSLRAMFAARCDEYVTQLDEMQRQLAAAEDEK 691 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 8775543 443331 2345555555555555555544
No 76
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.72 E-value=1.2 Score=57.27 Aligned_cols=112 Identities=21% Similarity=0.258 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 643 AEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQ 722 (1267)
Q Consensus 643 k~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE 722 (1267)
..+.|..+++..+..|+.+++.-+..+..+...+..+..--..-..++..+-..|...+.+-..|...+..=++-|-.|=
T Consensus 542 ~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 542 SCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDKNQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 34566666776666666666666666555555554333321112344555555666666666666666666667777777
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 723 DTSNGYNEKLAEAENLLELLRNDLNMTQERLE 754 (1267)
Q Consensus 723 ~EieElkeqLeElE~~Le~LR~El~l~q~k~e 754 (1267)
..+++-+++|+.+++.+-....|+..++.++.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777666665
No 77
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.66 E-value=2.1 Score=50.19 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElk 729 (1267)
++..+++-.-.+...|...+..-...+..++.+++...+.+..++..-.....+.......+-++...+..+..++..+.
T Consensus 213 ~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~ 292 (309)
T PF09728_consen 213 ELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLK 292 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555556666666666666666666666666666666665555555555555556566666666666666666
Q ss_pred HHHHHHHHHHHHHHH
Q 000822 730 EKLAEAENLLELLRN 744 (1267)
Q Consensus 730 eqLeElE~~Le~LR~ 744 (1267)
.++.-+++...+|+.
T Consensus 293 ~k~~kLe~LcRaLQ~ 307 (309)
T PF09728_consen 293 KKIEKLEKLCRALQA 307 (309)
T ss_pred HHHHHHHHHHHHHhh
Confidence 666665555554443
No 78
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=96.64 E-value=3.3 Score=52.23 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000822 1104 VQGLQTQISAIMEENNSLNETYQNAKNELQSV 1135 (1267)
Q Consensus 1104 ~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~ 1135 (1267)
|..-|.||+-+-|+...-..-|.+--.|--++
T Consensus 709 MEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~ 740 (786)
T PF05483_consen 709 MEKHKHQYDKIVEEKDAELGLYKKKEQEQSSH 740 (786)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888887777776655554333
No 79
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.61 E-value=4.2 Score=53.11 Aligned_cols=164 Identities=20% Similarity=0.184 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1267)
.|..+-+..-.+......++.-+..|+..|-.+......|++.-+.+..+..|... +..-..+++.....
T Consensus 395 s~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~----------e~~t~~~s~~rq~~ 464 (1195)
T KOG4643|consen 395 SYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLE----------ETSTVTRSLSRQSL 464 (1195)
T ss_pred hHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHhHHHHHH
Confidence 66677777777777777777788888888877777777888877777777766666 55555555555422
Q ss_pred hhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 000822 468 ETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLS 547 (1267)
Q Consensus 468 ~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLq 547 (1267)
..+.- +-+-...+|..+-.+.++.+++.|...+.+.-.....+..-.+.+..++.....++..+..+...+.
T Consensus 465 e~e~~--------~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe 536 (1195)
T KOG4643|consen 465 ENEEL--------DQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELE 536 (1195)
T ss_pred HhHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 0111112223333444444444444555555555555555555555555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000822 548 TALKEVEEEKKQLHDQMNDYKD 569 (1267)
Q Consensus 548 sEL~elE~ELeele~kleelqk 569 (1267)
..+..++.+...+-++|..+.-
T Consensus 537 ~~l~~lE~ENa~LlkqI~~Lk~ 558 (1195)
T KOG4643|consen 537 ELLGNLEEENAHLLKQIQSLKT 558 (1195)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 6666666666666555555543
No 80
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.61 E-value=0.2 Score=52.20 Aligned_cols=97 Identities=27% Similarity=0.392 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 493 AAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKIT 572 (1267)
Q Consensus 493 ~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs 572 (1267)
-.+.+-.....++...-.++.....++.+|..|+.|+..++.++..+...+......+...+..... ...+...|.
T Consensus 8 E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~----~E~l~rriq 83 (143)
T PF12718_consen 8 EADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSN----AEQLNRRIQ 83 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh----HHHHHhhHH
Confidence 3333333444444444455555555555555555555555555555555555555554433332222 224444444
Q ss_pred HHHHHHHHHhHHHHHHHHHHH
Q 000822 573 QLELILNQSNTRSSELEEELR 593 (1267)
Q Consensus 573 ~LEsqLk~LqsRireLEEele 593 (1267)
.|+-.+.....++....+.+.
T Consensus 84 ~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 84 LLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.40 E-value=1.1 Score=57.82 Aligned_cols=62 Identities=21% Similarity=0.302 Sum_probs=52.1
Q ss_pred HHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 000822 470 GAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSD 531 (1267)
Q Consensus 470 e~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e 531 (1267)
...+..+++.+..|+.-+..+..+-+..|+.+..|+..+.+....+..+|.||.+.......
T Consensus 459 k~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ 520 (697)
T PF09726_consen 459 KSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKE 520 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33455666777788888888999999999999999999999999999999999988755444
No 82
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.36 E-value=0.32 Score=50.76 Aligned_cols=96 Identities=27% Similarity=0.391 Sum_probs=68.9
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1267)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~L 581 (1267)
..|..-..++..+...++.++..+.......+.+|..|..+++.+..++..+...+..+...+..-....+..+ .+
T Consensus 3 ~~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E----~l 78 (143)
T PF12718_consen 3 QALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE----QL 78 (143)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH----HH
Confidence 34555666777788888888888888888888888888888888888888888888888877777766655544 56
Q ss_pred hHHHHHHHHHHHHHHHHHhh
Q 000822 582 NTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 582 qsRireLEEele~L~EeLeE 601 (1267)
+-+|..|++++......+.+
T Consensus 79 ~rriq~LEeele~ae~~L~e 98 (143)
T PF12718_consen 79 NRRIQLLEEELEEAEKKLKE 98 (143)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 66666666666544444444
No 83
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.32 E-value=2.1 Score=46.95 Aligned_cols=176 Identities=22% Similarity=0.282 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000822 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1267)
Q Consensus 510 ~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLE 589 (1267)
+--.+++.|..++.+++.++.++..+-.-+..-.-+-...|..++..-+.+-.-|..+...|..|...+.....+.+.++
T Consensus 9 ar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~ 88 (194)
T PF15619_consen 9 ARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERELE 88 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777776666666655555555556666555566666666666666666666666555555555
Q ss_pred HHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Q 000822 590 EELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKC----EEA 665 (1267)
Q Consensus 590 Eele~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK~----k~~ 665 (1267)
..+.....++-...+... .+..++.. ..|. .-+.+...+.....++++.+..+..|++++ +.|
T Consensus 89 ~klk~~~~el~k~~~~l~-------~L~~L~~d--knL~----eReeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~ 155 (194)
T PF15619_consen 89 RKLKDKDEELLKTKDELK-------HLKKLSED--KNLA----EREELQRKLSQLEQKLQEKEKKIQELEKQLELENKSF 155 (194)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHc--CCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 555544444443222222 22222100 0111 011222234445555666666666676666 666
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 000822 666 EAGSKQYSDKVCELASELEAFQARTSSLEVALQ 698 (1267)
Q Consensus 666 eqeLae~~e~l~~Lk~ELE~lekE~relEt~Le 698 (1267)
...+..+......+..++..+..++..+...|.
T Consensus 156 ~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 156 RRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777666666666666666655443
No 84
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.30 E-value=0.002 Score=82.44 Aligned_cols=99 Identities=24% Similarity=0.272 Sum_probs=0.0
Q ss_pred HHHHHHhcHHHHhhhhHHHHH-------HhccchHHHHHHHHH---hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Q 000822 454 ELELKLKSLEEQHNETGAAAA-------TASQRNLELEDIIRA---SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLN 523 (1267)
Q Consensus 454 El~~~~k~lee~~~~he~~~~-------~~~qk~~EL~~qi~~---~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~ 523 (1267)
+++..++-|++. .....++. .+.+....|++++.. .+..++..+.++..|...+.+...+...++-.+.
T Consensus 316 ~ve~YKkKLed~-~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~ 394 (713)
T PF05622_consen 316 EVEKYKKKLEDL-EDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSEESRRADKLEFENK 394 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665552 22333333 333444778888777 7778888888888888888888888888888888
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 524 LVELKSSDSEREVREFSEKLSQLSTALKEV 553 (1267)
Q Consensus 524 eLq~K~~e~erei~eLeeqiskLqsEL~el 553 (1267)
.+..++..+.++...+......++..+..+
T Consensus 395 ~L~ek~~~l~~eke~l~~e~~~L~e~~eeL 424 (713)
T PF05622_consen 395 QLEEKLEALEEEKERLQEERDSLRETNEEL 424 (713)
T ss_dssp ------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888888887777777666666554433
No 85
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=96.21 E-value=6 Score=50.50 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=30.2
Q ss_pred HHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 496 EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQL 560 (1267)
Q Consensus 496 k~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeel 560 (1267)
..|.+|.+|+-+|........++.+.+...+--..++...+..+...+..++..+..++.++..+
T Consensus 164 eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~L 228 (617)
T PF15070_consen 164 ELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSL 228 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44555555555555555555555555444443333444444444444444444444444333333
No 86
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=96.14 E-value=4 Score=47.86 Aligned_cols=130 Identities=22% Similarity=0.228 Sum_probs=60.6
Q ss_pred HHHHHhhHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 000822 327 DLIKASESQAKEEISALD---NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAV-LKTQEAQVSNVNEELDKVSKE 402 (1267)
Q Consensus 327 k~lK~s~~~lKedkdrle---~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ek-L~e~eaef~eL~eELe~lr~~ 402 (1267)
.........+.-+++.+. .....+.+.++.+=-+++.-+..+-++...+...... -.+....|+....++..
T Consensus 46 ~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~eee~kR~el~~kFq~~L~dIq~---- 121 (309)
T PF09728_consen 46 KKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAREEEEKRKELSEKFQATLKDIQA---- 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 333333444444444443 3333334444444444444444554444433332222 22244444444443322
Q ss_pred HHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHh
Q 000822 403 KEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATA 476 (1267)
Q Consensus 403 keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~ 476 (1267)
.+..-...-..+......|.+.|+....-|..||. -+....|..+-...-+.|.+...
T Consensus 122 ------~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~----------~~~~~~k~keLE~Ql~~AKl~q~ 179 (309)
T PF09728_consen 122 ------QMEEQSERNIKLREENEELREKLKSLIEQYELREE----------HFEKLLKQKELEVQLAEAKLEQQ 179 (309)
T ss_pred ------HHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHH
Confidence 22222222233555566677777777777777777 66666655554444444444433
No 87
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=96.06 E-value=0.0016 Score=83.40 Aligned_cols=68 Identities=25% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 000822 280 VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAK 351 (1267)
Q Consensus 280 ~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~ 351 (1267)
+|+.++.+.+ ....+.-+|.+|.+|+.++..+...+....-++..++..+..+...++++......|+
T Consensus 351 LEeel~~~~~----~~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~l~~eke~l~~e~~~L~ 418 (713)
T PF05622_consen 351 LEEELKKARA----LKSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEALEEEKERLQEERDSLR 418 (713)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554432 2233556667777777777776665555666666666666666666666553333333
No 88
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=96.04 E-value=1.6 Score=47.98 Aligned_cols=66 Identities=14% Similarity=0.214 Sum_probs=34.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhh
Q 000822 373 NARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1267)
Q Consensus 373 ~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~ 438 (1267)
-.+..+...|.+....+.++..+...++.--..-.+.+..+.++=..||.......++++.+...+
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~L 77 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERL 77 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555555555555555555555554433
No 89
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.98 E-value=4.9 Score=51.58 Aligned_cols=96 Identities=17% Similarity=0.169 Sum_probs=60.7
Q ss_pred hhhhhHh-HHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHH
Q 000822 273 KISEKEK-VEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAK 351 (1267)
Q Consensus 273 ~~~~~~k-~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~ 351 (1267)
.+.++-| +|-.+.+..+-=..++.+..+++-.+..+-.-.-+-+-++..+-.++.-+++.+..++.....++..+....
T Consensus 619 ~f~kL~kele~~i~k~ls~~~eee~~~~~~~k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~ 698 (970)
T KOG0946|consen 619 EFKKLFKELEGLIAKLLSSKTEEEEQTQLAEKYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFI 698 (970)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555 666776666665555555555553333333333334455666777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000822 352 ENLHAKVSELEDIKLKL 368 (1267)
Q Consensus 352 ~~l~~ke~El~~l~~kl 368 (1267)
........++..|..++
T Consensus 699 s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 699 SEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77777777777777776
No 90
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=95.93 E-value=4.6 Score=46.82 Aligned_cols=43 Identities=21% Similarity=0.382 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 548 TALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1267)
Q Consensus 548 sEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEE 590 (1267)
..+..+-..-..++.++-++...+.++......+..++..+..
T Consensus 34 ~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 34 KEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 91
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.78 E-value=9 Score=48.98 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=17.9
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 000822 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSER 534 (1267)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~er 534 (1267)
.++.+-++++++++-|+.|-..-...+...+|
T Consensus 321 Ny~kGqaELerRRq~leeqqqreree~eqkEr 352 (1118)
T KOG1029|consen 321 NYEKGQAELERRRQALEEQQQREREEVEQKER 352 (1118)
T ss_pred hHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566666666666665554444444333
No 92
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.62 E-value=10 Score=48.38 Aligned_cols=82 Identities=15% Similarity=0.242 Sum_probs=39.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 000822 520 QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEE--KKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKE 597 (1267)
Q Consensus 520 ~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~E--Leele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~E 597 (1267)
..+..+..+...+..++......+.+|..++..+... -+.+..+|-++.+-|..-..+|...-.-.+.+..+++.+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555444433 22334444444444444444444444444555555554444
Q ss_pred HHhh
Q 000822 598 RSAE 601 (1267)
Q Consensus 598 eLeE 601 (1267)
++..
T Consensus 527 kL~R 530 (594)
T PF05667_consen 527 KLDR 530 (594)
T ss_pred HHHh
Confidence 4443
No 93
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.38 E-value=1.8 Score=48.95 Aligned_cols=121 Identities=21% Similarity=0.341 Sum_probs=85.1
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000822 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1267)
Q Consensus 313 ~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL 392 (1267)
.+-.-.++....+++.++...+.+..++..++..+.++..++.+.+.+|..+..++ +......+.+ .....+..|
T Consensus 20 ~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~----~~~e~kl~~v-~~~~e~~aL 94 (239)
T COG1579 20 DRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERI----KRAEEKLSAV-KDERELRAL 94 (239)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc-ccHHHHHHH
Confidence 33344444677777777777777777777777777788888888888888887777 4444444333 244578888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhh
Q 000822 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENF 438 (1267)
Q Consensus 393 ~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~ 438 (1267)
..++..++....+++..+.++...+..+......+...+..+...+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888777777777776666666654433
No 94
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.32 E-value=15 Score=48.67 Aligned_cols=172 Identities=17% Similarity=0.216 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000822 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1267)
Q Consensus 508 ~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRire 587 (1267)
...+..+...|..||.+++.+.. .....+.+++-+...|..+...+..+...+..+...+...++.+..+.-++..
T Consensus 654 ~~~L~~~k~rl~eel~ei~~~~~----e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~ 729 (1141)
T KOG0018|consen 654 VDQLKEKKERLLEELKEIQKRRK----EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISE 729 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHH
Confidence 34455566667777777776333 66667777777777777777777777777777777777777777777766666
Q ss_pred HHHHHHHHHHHHhhHHHHhhhhhhhh-HHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000822 588 LEEELRITKERSAEDEDRANMSHQRS-IELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKC---- 662 (1267)
Q Consensus 588 LEEele~L~EeLeE~E~rak~~rqrs-~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK~---- 662 (1267)
+...+........+++.+.+....++ ...-..+...-..+++... .+..-.++.+++.++..++.++
T Consensus 730 i~r~l~~~e~~~~~L~~~~n~ved~if~~f~~~igv~ir~Yee~~~--------~~~~a~k~~ef~~q~~~l~~~l~fe~ 801 (1141)
T KOG0018|consen 730 IKRKLQNREGEMKELEERMNKVEDRIFKGFCRRIGVRIREYEEREL--------QQEFAKKRLEFENQKAKLENQLDFEK 801 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCeeeehHHHHHH--------HHHHHHHHHHHHHHHHHHhhhhhhee
Confidence 66666555555555444443333322 1110000000011111111 1111234446777777777666
Q ss_pred -HHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 000822 663 -EEAEAGSKQYSDKVCELASELEAFQARTS 691 (1267)
Q Consensus 663 -k~~eqeLae~~e~l~~Lk~ELE~lekE~r 691 (1267)
.+....+..|...++.+..+++.+...-.
T Consensus 802 ~~d~~~~ve~~~~~v~~~~~~~~~~~~~e~ 831 (1141)
T KOG0018|consen 802 QKDTQRRVERWERSVEDLEKEIEGLKKDEE 831 (1141)
T ss_pred cccHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 55666666777777777666666654333
No 95
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.29 E-value=17 Score=48.92 Aligned_cols=82 Identities=22% Similarity=0.219 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHH-HHHhhhcchhHhhhHHH---HHHHHHHHHHHHHHHHHHHHh
Q 000822 778 EEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD-ALANITSRDSEAKSFSE---KLKNLEGQVKMYEEQLAEAAG 853 (1267)
Q Consensus 778 ~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqe-ale~~~~~~sEa~~l~e---~LKKLE~qikele~ql~ea~r 853 (1267)
+.++-++...|.++++-|.-+. .+.-+++..+-- ..+..... ..+++ ..+.+...+..|+.+|+....
T Consensus 699 e~~~~e~~~~lseek~ar~k~e----~~~~~i~~e~e~L~~d~~~~~----~~~~~l~r~~~~~~~~vl~Lq~~LEqe~~ 770 (1317)
T KOG0612|consen 699 EAQMKEIESKLSEEKSAREKAE----NLLLEIEAELEYLSNDYKQSQ----EKLNELRRSKDQLITEVLKLQSMLEQEIS 770 (1317)
T ss_pred HHHHHHHHHHhcccccHHHHHH----HHHHHHHHHHHHHhhhhhhhc----cchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777776666666 444444443322 11111111 11111 114455556667777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 000822 854 KYALLKEELDSYFIK 868 (1267)
Q Consensus 854 k~~~l~~Ele~~~~~ 868 (1267)
+..+.+.+|. ++..
T Consensus 771 ~r~~~~~eLs-sq~~ 784 (1317)
T KOG0612|consen 771 KRLSLQRELK-SQEQ 784 (1317)
T ss_pred HhhhhHHHhh-hHHH
Confidence 7777777775 4443
No 96
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.92 E-value=5.1 Score=45.37 Aligned_cols=125 Identities=19% Similarity=0.278 Sum_probs=77.0
Q ss_pred HHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 000822 496 EAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY--KDKITQ 573 (1267)
Q Consensus 496 k~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleel--qkkIs~ 573 (1267)
+....+..+........+.++.+...+..+...+.+.+-.+.++..++..+..+|......+...+.++... ....+.
T Consensus 14 ~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~a 93 (239)
T COG1579 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRA 93 (239)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 344444555555556666666666666666666666666666666666666666666666666666555322 233456
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhH
Q 000822 574 LELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLF 620 (1267)
Q Consensus 574 LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell 620 (1267)
|...+..+..++..|++++..+...+...+..+...+..+..++..+
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~ 140 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNL 140 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777777776666666665555555555555454444
No 97
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=19 Score=46.41 Aligned_cols=71 Identities=27% Similarity=0.361 Sum_probs=41.7
Q ss_pred HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 000822 816 ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNK 889 (1267)
Q Consensus 816 ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~ 889 (1267)
.++...+.-.++. .-+..|+..+..++..+.+....+.....+++.+.-.+++++.-+..+...+......
T Consensus 553 ~le~~kk~~~e~~---~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 553 SLEMLKKKAQEAK---QSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555555555555 5555556666666666666666666666666666666666666666666655555443
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=94.56 E-value=21 Score=46.36 Aligned_cols=169 Identities=20% Similarity=0.227 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHhccc-----
Q 000822 704 ERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEK------------DLKAAGLR----- 766 (1267)
Q Consensus 704 ~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~------------~l~~~~~~----- 766 (1267)
+..|..++..++..+..|-..+.+.+.+|.-..+.++.....+..+...+..+-+ .....|-.
T Consensus 267 iqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~l~~~ke~~~~~d~~~~~~s~~d~~~ 346 (717)
T PF09730_consen 267 IQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRKLQEDKEQQSAEDSEKERDSHEDGDY 346 (717)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhhhhhhcccccccccccch
Confidence 3456666666666666666666666666665555555444444433333333222 01111100
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHH
Q 000822 767 -------ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQD---ALANITSRDSEAKSFSEKLKN 836 (1267)
Q Consensus 767 -------eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKK 836 (1267)
.+-++.|.+....++..+..+|...+..-..+..-+.-.+..++..++. .+..+.+ ..+.-.+.+..
T Consensus 347 ye~Di~~~eiLe~Ky~vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek---~~re~qeri~~ 423 (717)
T PF09730_consen 347 YEVDINGLEILECKYKVAVSEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEK---SSREDQERISE 423 (717)
T ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHH
Confidence 0224678888888999999999988887777775555555555555555 4444432 22222367788
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH
Q 000822 837 LEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLEST 875 (1267)
Q Consensus 837 LE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~ 875 (1267)
|+.++..+-.-+.+++..++.++-++--|-+.|+++--.
T Consensus 424 LE~ELr~l~~~A~E~q~~LnsAQDELvtfSEeLAqLYHH 462 (717)
T PF09730_consen 424 LEKELRALSKLAGESQGSLNSAQDELVTFSEELAQLYHH 462 (717)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888899999999998888888877543
No 99
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=94.54 E-value=9 Score=42.02 Aligned_cols=157 Identities=19% Similarity=0.248 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 000822 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQ 611 (1267)
Q Consensus 532 ~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rq 611 (1267)
.+..+..+..+++-+..++..++..+..+..++.+.......-...++.+.++...+++..+.+.-++.+....+.
T Consensus 2 ae~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEAk~iaE---- 77 (205)
T KOG1003|consen 2 AEADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEAKHIAE---- 77 (205)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence 3456777777788888888888888888888888888877777888888888888888888877777666211111
Q ss_pred hhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh
Q 000822 612 RSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTS 691 (1267)
Q Consensus 612 rs~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~r 691 (1267)
..-.++++....+--++..++.+-.|..--+..+..|+.......+.+..+...-..+....+.+...++
T Consensus 78 ----------~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik 147 (205)
T KOG1003|consen 78 ----------KADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELK 147 (205)
T ss_pred ----------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 1113334333344444444444444444444555555555555555555555555555555666666665
Q ss_pred hHHHHHHHHHH
Q 000822 692 SLEVALQMAND 702 (1267)
Q Consensus 692 elEt~Lee~re 702 (1267)
.+...|...-.
T Consensus 148 ~ltdKLkEaE~ 158 (205)
T KOG1003|consen 148 ELTDKLKEAET 158 (205)
T ss_pred HHHHHHhhhhh
Confidence 55554444433
No 100
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.18 E-value=15 Score=43.09 Aligned_cols=203 Identities=16% Similarity=0.184 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHH
Q 000822 516 VELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKI--------------TQLELILNQS 581 (1267)
Q Consensus 516 keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkI--------------s~LEsqLk~L 581 (1267)
+.|-.+...+..+...++.++......|..++-++.-....+.-+.....+-...- ..--..+..+
T Consensus 86 qsLl~~N~~L~~~~~~le~~L~~~~e~v~qLrHeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~L 165 (306)
T PF04849_consen 86 QSLLEQNQDLSERNEALEEQLGAALEQVEQLRHELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEAL 165 (306)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHH
Confidence 44555555666666666666666666677777766666655544443322111000 1112445678
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 582 NTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRVNELELLLEAEKYRIQELEEQISKLEKK 661 (1267)
Q Consensus 582 qsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell~~~k~kLEeae~~leelEe~LEk~K~RlqELEeqis~LEKK 661 (1267)
+.+++.|+++-..|+.+..... .....+++.. ..=+.++=.++.....+
T Consensus 166 q~Klk~LEeEN~~LR~Ea~~L~------------------~et~~~EekE-------------qqLv~dcv~QL~~An~q 214 (306)
T PF04849_consen 166 QEKLKSLEEENEQLRSEASQLK------------------TETDTYEEKE-------------QQLVLDCVKQLSEANQQ 214 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh------------------HHHhhccHHH-------------HHHHHHHHHHhhhcchh
Confidence 8888888888777776655511 0001111100 00011233455566667
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000822 662 CEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLEL 741 (1267)
Q Consensus 662 ~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~ 741 (1267)
+..+..+|+.-..+..+...+|..+.+.+-.+...+......-.+|...+......=..|..++.+++.++.+.-+.+..
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~E 294 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHE 294 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777788888888888888777777777777777777888888888888888888888888888888777776
Q ss_pred HHHHHHHH
Q 000822 742 LRNDLNMT 749 (1267)
Q Consensus 742 LR~El~l~ 749 (1267)
-+-++..+
T Consensus 295 aQEElk~l 302 (306)
T PF04849_consen 295 AQEELKTL 302 (306)
T ss_pred HHHHHHHh
Confidence 66555443
No 101
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.02 E-value=26 Score=45.22 Aligned_cols=73 Identities=26% Similarity=0.275 Sum_probs=36.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 506 PRFIAAEQRSVELEQQLNLVELKSSDS--EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELIL 578 (1267)
Q Consensus 506 ~~~~~~Ekk~keLE~QL~eLq~K~~e~--erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqL 578 (1267)
..+..+..++..++.++..+..++..+ ...+..+...+..+...+......+..+...+..+...+..++..+
T Consensus 391 ~~~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 391 DAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555442 2344444444555544444444444444444444444444444444
No 102
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.40 E-value=24 Score=42.98 Aligned_cols=61 Identities=16% Similarity=0.388 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh
Q 000822 376 ESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1267)
Q Consensus 376 ~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~ 436 (1267)
......|......+..|...|..++.....++.++.+....+..++.....+...|..+..
T Consensus 48 ~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 48 AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 3334444444555555555555555555555555555555555555555555555555544
No 103
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.02 E-value=19 Score=42.52 Aligned_cols=151 Identities=17% Similarity=0.183 Sum_probs=92.8
Q ss_pred hhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHh
Q 000822 449 LANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELK 528 (1267)
Q Consensus 449 ~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K 528 (1267)
.+++..|..++...-+.+.....-+.+++||+.|+.+-|.-++.++-+.+.........-.. +....|=.|+..++.+
T Consensus 64 ~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~--~ere~lV~qLEk~~~q 141 (319)
T PF09789_consen 64 EKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFP--HEREDLVEQLEKLREQ 141 (319)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccc--hHHHHHHHHHHHHHHH
Confidence 34778999999999999999999999999999999999988888776666555333222111 4555555556666666
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDK-------ITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 529 ~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkk-------Is~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
+..+++++..+.+..+++..+-..+......++..++-.-.. |..|=-.-..+..|+..++++.+.+...+..
T Consensus 142 ~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~i~K 221 (319)
T PF09789_consen 142 IEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQTINK 221 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666665555555555555444333333333333222211 3333334445666666666666555544444
No 104
>PRK09039 hypothetical protein; Validated
Probab=92.96 E-value=5.3 Score=47.50 Aligned_cols=41 Identities=20% Similarity=0.350 Sum_probs=19.7
Q ss_pred HHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Q 000822 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLN 523 (1267)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~ 523 (1267)
|.+.+.--.+....+-..+..+...+..++..+..|+.+..
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~ 105 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLA 105 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444444444444444444444455555555555444
No 105
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=92.89 E-value=19 Score=40.20 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 000822 655 ISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAE 734 (1267)
Q Consensus 655 is~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeE 734 (1267)
+..+.......+.+...|...+..+.........-+..++..+....+. ...........+..+..+...+...|..
T Consensus 11 ~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e---~~~~~~~~~~~i~~~~~erdq~~~dL~s 87 (207)
T PF05010_consen 11 IKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEE---KQKQKELSEAEIQKLLKERDQAYADLNS 87 (207)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHhhHHhHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333333334444444444444444444444444444433332222 1112222334444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHH
Q 000822 735 AENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQ 814 (1267)
Q Consensus 735 lE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lq 814 (1267)
++.....+-..+.-++.-+..+-. ++++++ +.+..+...+.... --|++++...+.+|.
T Consensus 88 ~E~sfsdl~~ryek~K~vi~~~k~-----------NEE~Lk---k~~~ey~~~l~~~e-------qry~aLK~hAeekL~ 146 (207)
T PF05010_consen 88 LEKSFSDLHKRYEKQKEVIEGYKK-----------NEETLK---KCIEEYEERLKKEE-------QRYQALKAHAEEKLE 146 (207)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH-----------hHHHHH---HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 555555555555555444443322 444444 22223333333222 345677888888887
Q ss_pred H---HHHhhh-cchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000822 815 D---ALANIT-SRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYF 866 (1267)
Q Consensus 815 e---ale~~~-~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~ 866 (1267)
. -|+... +..+|+..|.-.||+.+-.+..++..|+.-.+.+..|.+=-+++.
T Consensus 147 ~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkICDeLI 202 (207)
T PF05010_consen 147 KANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESLEQKTKENEELTKICDELI 202 (207)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7 455555 778888888888899999888888888777766666655444443
No 106
>PF13514 AAA_27: AAA domain
Probab=92.81 E-value=52 Score=45.17 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 562 DQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 562 ~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
..+..+......+...+..+..++..+...+..+..++..
T Consensus 452 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (1111)
T PF13514_consen 452 ETVEAFRAEFEELERQLRRARDRLEELEEELARLEARLRR 491 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555444444
No 107
>PRK09039 hypothetical protein; Validated
Probab=92.78 E-value=8.1 Score=45.99 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=9.9
Q ss_pred ccchHHHHHHHHHhhHHHHHHHH
Q 000822 477 SQRNLELEDIIRASNEAAEEAKS 499 (1267)
Q Consensus 477 ~qk~~EL~~qi~~~~~~~Ek~k~ 499 (1267)
+.+...|+..|..+++.+..+..
T Consensus 73 ~~~~~~l~~~l~~l~~~l~~a~~ 95 (343)
T PRK09039 73 RQGNQDLQDSVANLRASLSAAEA 95 (343)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433333
No 108
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.77 E-value=43 Score=44.08 Aligned_cols=202 Identities=20% Similarity=0.208 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhh
Q 000822 342 ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMK 421 (1267)
Q Consensus 342 rle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~ 421 (1267)
.++..+.++...+.....+-..+..-+.+-...+..+.+......++|..+...|+...+...++.=.+.-+.
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~------- 161 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLS------- 161 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3445666666666666666665555554444555555555555555555444444444333333332222222
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhh----------
Q 000822 422 ELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASN---------- 491 (1267)
Q Consensus 422 e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~---------- 491 (1267)
.+|+ + |+.|....+|+.+..+..|= +.-+|+.-|+.-++-++
T Consensus 162 ---kele--i-------------------r~~E~~~~~~~ae~a~kqhl----e~vkkiakLEaEC~rLr~l~rk~lpgp 213 (769)
T PF05911_consen 162 ---KELE--I-------------------RNEEREYSRRAAEAASKQHL----ESVKKIAKLEAECQRLRALVRKKLPGP 213 (769)
T ss_pred ---HHHH--H-------------------HHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 2222 1 23355555566666666552 23356666777666633
Q ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHH---------HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 492 EAAEEAKSQLRELEPRFIAAEQRSVELE---------QQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD 562 (1267)
Q Consensus 492 ~~~Ek~k~~l~~l~~~~~~~Ekk~keLE---------~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~ 562 (1267)
|++-+-|..+..+.......+.++.-.- ...........-+..++-.+++...-|+.-|.....+|.....
T Consensus 214 aa~a~mk~ev~~~~~~~~~~r~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~ 293 (769)
T PF05911_consen 214 AALAQMKNEVESLGRDSGENRRRRSPSRPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRN 293 (769)
T ss_pred HHHHHhHHHHHHhccccccccCCCCCCcccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666555332222221111100 1111222223334444555566666667777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 000822 563 QMNDYKDKITQLELIL 578 (1267)
Q Consensus 563 kleelqkkIs~LEsqL 578 (1267)
.......+++.++.++
T Consensus 294 ~~a~ta~kL~~~e~ql 309 (769)
T PF05911_consen 294 MYAKTASKLSQLEAQL 309 (769)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777777777777777
No 109
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=92.64 E-value=37 Score=43.03 Aligned_cols=140 Identities=20% Similarity=0.248 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 000822 339 EISALDNLLADAKENLHAKVSELEDIKLKLQEEVNA--RESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGN 416 (1267)
Q Consensus 339 dkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~--~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLess 416 (1267)
|.+++++.+..--..|...+.....-..++-++... +..-..++...+.-+--.+.+++.+...-...+...=+.-..
T Consensus 16 dle~LQreLd~~~~~l~~~Q~~S~~srk~L~e~trefkk~~pe~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~ 95 (629)
T KOG0963|consen 16 DLERLQRELDAEATEIAQRQDESEISRKRLAEETREFKKNTPEDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEK 95 (629)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 334444444444444444444433333333222221 222344555666777788899999999999999999999999
Q ss_pred HHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhh------HHHHHHhccchHHHHHHHHH
Q 000822 417 IARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNET------GAAAATASQRNLELEDIIRA 489 (1267)
Q Consensus 417 ieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~h------e~~~~~~~qk~~EL~~qi~~ 489 (1267)
+.+.|+|.--|......... -.- -..|...+++.+++...+- ...+..+.++..+++.++..
T Consensus 96 L~eaPDP~pll~sa~~~l~k----~~~-------~~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~ 163 (629)
T KOG0963|consen 96 LIEAPDPVPLLASAAELLNK----QQK-------ASEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEI 163 (629)
T ss_pred HhhCCCCchHHHHHHHHhhh----hhh-------hhhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHH
Confidence 99999997766543322211 000 1235555666655544432 23555666666666666555
No 110
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.43 E-value=16 Score=38.35 Aligned_cols=95 Identities=25% Similarity=0.245 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElk 729 (1267)
........++.++.++++.+.....+...+....+...+.+..+...+.......++|...+..+...+..|......++
T Consensus 14 ~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q 93 (140)
T PF10473_consen 14 ESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQ 93 (140)
T ss_pred HHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666666666666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 000822 730 EKLAEAENLLELLRN 744 (1267)
Q Consensus 730 eqLeElE~~Le~LR~ 744 (1267)
.++.+++.......+
T Consensus 94 ~kv~eLE~~~~~~~~ 108 (140)
T PF10473_consen 94 EKVSELESLNSSLEN 108 (140)
T ss_pred HHHHHHHHHhHHHHH
Confidence 777777776664444
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=92.08 E-value=36 Score=41.60 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 000822 697 LQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDL 746 (1267)
Q Consensus 697 Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El 746 (1267)
+.........|..-+.+-.+....|+..+..-+..++++-..-..|+.++
T Consensus 191 ~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~~~I 240 (420)
T COG4942 191 LSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEI 240 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33334444444444444455555555555555555555544444444443
No 112
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=92.00 E-value=22 Score=39.03 Aligned_cols=47 Identities=19% Similarity=0.194 Sum_probs=18.3
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 000822 667 AGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNA 713 (1267)
Q Consensus 667 qeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqlee 713 (1267)
.........+..+..+...+...+-.++..+....+.+.+-+..+++
T Consensus 116 ~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~e 162 (193)
T PF14662_consen 116 AERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEE 162 (193)
T ss_pred HhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 33333334444444444444444434444333333333333333333
No 113
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.91 E-value=43 Score=42.14 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 704 ERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLE 754 (1267)
Q Consensus 704 ~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~e 754 (1267)
.+.....+......+-.|+.-++.+...++|..+.+..+..++..+-++..
T Consensus 427 ~~ei~~~~~~~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~ 477 (581)
T KOG0995|consen 427 LDEISEELHEAENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYE 477 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666667777777777777777777777777777777666666555
No 114
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=91.44 E-value=34 Score=39.97 Aligned_cols=245 Identities=16% Similarity=0.228 Sum_probs=121.7
Q ss_pred hHHHHHHHHHhhHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEIS----ALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELD 397 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkd----rle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe 397 (1267)
.-.||+.+|..-.+++-.+. -+-..+.++.+++..+..+-.-|+++++.|--.+..+...|....+++.....+.+
T Consensus 29 y~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRLaaAi~d~d 108 (305)
T PF14915_consen 29 YLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKERLETEIESYRSRLAAAIQDHD 108 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 66666666665555444433 33367788888888888888888888877777777777777666666666655555
Q ss_pred HHHHHHHHHHHHHHHhHhhH----HHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHH
Q 000822 398 KVSKEKEALEAAMADLTGNI----ARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAA 473 (1267)
Q Consensus 398 ~lr~~keslEk~i~DLessi----eeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~ 473 (1267)
.-...+..++-..-+-...- ..|+-....|.+.-.-+.+-++|+++
T Consensus 109 qsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaes------------------------------ 158 (305)
T PF14915_consen 109 QSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAES------------------------------ 158 (305)
T ss_pred HHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHH------------------------------
Confidence 43333333322222211100 11111222222222222223333333
Q ss_pred HHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 474 ATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEV 553 (1267)
Q Consensus 474 ~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~el 553 (1267)
|...|+..+...+-++-.--..|..++..+.-.....++++.-..--+.+++..-+.-..+.+++..++++..=+
T Consensus 159 -----K~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LL 233 (305)
T PF14915_consen 159 -----KFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLL 233 (305)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222222222222233444444444445555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 554 EEEKKQLHDQMNDYKDKITQLE---------------LILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 554 E~ELeele~kleelqkkIs~LE---------------sqLk~LqsRireLEEele~L~EeLeE 601 (1267)
...|..+..+...-.+.|...+ .+.-.+..+...|-.+++-|++++-.
T Consensus 234 rQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 234 RQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 5555555444433332222222 22224666666666666666665543
No 115
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.41 E-value=57 Score=42.57 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 000822 535 EVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSA 600 (1267)
Q Consensus 535 ei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLe 600 (1267)
..+.+...+.+++..|..++..++.+......++.....|...++...+....+.+..+.|+-++.
T Consensus 651 ~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 651 YHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555555555555555555555555555555555555555555555555555554444
No 116
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.08 E-value=28 Score=38.37 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=40.7
Q ss_pred HHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 000822 470 GAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREF 539 (1267)
Q Consensus 470 e~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eL 539 (1267)
++-++.++.|+--|+..++...-.+..+..+|.+++..-...+..++.++.-...+..+...++.++.+.
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~~KL~Eaeq~~dE~er~~Kv~enr~~kdEE~~e~~e~qLkEA 72 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATALQKLEEAEQAADESERGMKVIENRAQKLEEKMEAQEAQLKEA 72 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666555555555555555555555555555444444
No 117
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.95 E-value=59 Score=41.86 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 000822 533 EREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITK 596 (1267)
Q Consensus 533 erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~ 596 (1267)
.+.|..+.....++...+..+...+......+..-.....-+.-.+..+..++..|+.+-..++
T Consensus 460 ~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr 523 (716)
T KOG4593|consen 460 YREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR 523 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444444444433333333333334444444555555444444
No 118
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.62 E-value=2.3 Score=46.34 Aligned_cols=112 Identities=29% Similarity=0.343 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1267)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqk 569 (1267)
+...+-+....|.++...+..+-+++..+...+..+..++....+.+..+...+..++..+..+...+......+..++.
T Consensus 72 le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~D 151 (194)
T PF08614_consen 72 LEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQD 151 (194)
T ss_dssp ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666777777777777778888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 570 kIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
.+..|......+..+++.|+.+-..|-++.-.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~ 183 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENRELVERWMQ 183 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888877766555443
No 119
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=89.98 E-value=15 Score=37.79 Aligned_cols=82 Identities=21% Similarity=0.353 Sum_probs=48.8
Q ss_pred HHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHHH
Q 000822 1023 LKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTS 1102 (1267)
Q Consensus 1023 ~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~ 1102 (1267)
+..|...+..+......+..... ..+..+...-...++.+..+..+++-|..+++.|......+. .+..
T Consensus 5 ~~~l~~e~~~~~~~~~~~~~~~~-------~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~----~~~~ 73 (132)
T PF07926_consen 5 LSSLQSELQRLKEQEEDAEEQLQ-------SLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQ----ELQQ 73 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH----HHHH
Confidence 55566666666666555554332 333677777777888888888888888888885555444433 3333
Q ss_pred HHHHHHHHHHHHH
Q 000822 1103 EVQGLQTQISAIM 1115 (1267)
Q Consensus 1103 ~~k~lk~q~ee~e 1115 (1267)
.+..++..++.+.
T Consensus 74 ~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 74 EINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 120
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=89.92 E-value=62 Score=40.53 Aligned_cols=84 Identities=19% Similarity=0.137 Sum_probs=63.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHH----hHHHHHHHHHHHHH
Q 000822 845 EEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQ----LKSKVAELQELLDS 920 (1267)
Q Consensus 845 e~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~----Lesei~eLqe~Le~ 920 (1267)
..-+.++......+-+++.+...-+.+.-+-.+.+...+..+.+.. ....+|+-|+...-. +-+.=..+...|..
T Consensus 446 l~l~~~~~~~i~~l~~eLse~pinm~~v~~~v~~a~~~m~~l~~~t-~e~ve~a~LaE~lIQY~NRYRs~~~~v~~~l~e 524 (570)
T COG4477 446 LSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLEDET-EEVVENAVLAEQLIQYGNRYRSRNAEVAKSLNE 524 (570)
T ss_pred HHHHHhhhhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 4445555577788888888888888888888888888888888877 778888888766544 45555788888888
Q ss_pred HHHHHHHHH
Q 000822 921 AISEKEATG 929 (1267)
Q Consensus 921 a~~ere~ae 929 (1267)
|.+-.+.+.
T Consensus 525 Ae~lF~~~~ 533 (570)
T COG4477 525 AERLFENAF 533 (570)
T ss_pred HHHHHHHhc
Confidence 877666443
No 121
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=89.08 E-value=79 Score=40.59 Aligned_cols=49 Identities=10% Similarity=0.046 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q 000822 663 EEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESL 711 (1267)
Q Consensus 663 k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eql 711 (1267)
..+..++-++..++.+.+.+|..+-.+.+.+...++....++.....-.
T Consensus 487 s~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~ 535 (594)
T PF05667_consen 487 SAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVT 535 (594)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4556667777777777777777777777777777666666655333333
No 122
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=88.94 E-value=48 Score=37.88 Aligned_cols=27 Identities=37% Similarity=0.570 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000822 714 AADEKRKLQDTSNGYNEKLAEAENLLE 740 (1267)
Q Consensus 714 vek~k~~LE~EieElkeqLeElE~~Le 740 (1267)
+...+..+..........|.+.++.|.
T Consensus 225 ~~~k~~~l~~~~~~~~~~L~~a~~~L~ 251 (264)
T PF06008_consen 225 LEKKKQELSEQQNEVSETLKEAEDLLD 251 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 123
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=88.63 E-value=75 Score=39.74 Aligned_cols=106 Identities=14% Similarity=0.171 Sum_probs=58.6
Q ss_pred HHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHH
Q 000822 407 EAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDI 486 (1267)
Q Consensus 407 Ek~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~q 486 (1267)
..++.-|...+.++.+.+..|...+..-+.++.+.+. .++.+=+-|..+ |-......++++.++.++..+=+.-
T Consensus 91 ~n~m~~lD~rLvevre~L~~irr~q~~q~~erk~~~q---e~~~rl~~L~~~---Lrqee~~re~a~~aL~k~qe~~~~k 164 (531)
T PF15450_consen 91 QNQMQQLDKRLVEVREALTQIRRKQALQDSERKGSEQ---EAGLRLSKLQDM---LRQEEQGREDACSALQKSQEEDSQK 164 (531)
T ss_pred hhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHH---HHHHHHhHHHHHHHHHhcchhhHHh
Confidence 4455555556666666666666666655556655555 233333344443 3344445677888888887665555
Q ss_pred HHH----hhHHHHHHHHHH------------hhHhhhHHHHHHHHHHH
Q 000822 487 IRA----SNEAAEEAKSQL------------RELEPRFIAAEQRSVEL 518 (1267)
Q Consensus 487 i~~----~~~~~Ek~k~~l------------~~l~~~~~~~Ekk~keL 518 (1267)
++. +.+.+-+....+ ..+++.|.+.++..+.-
T Consensus 165 ~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~ 212 (531)
T PF15450_consen 165 VDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQ 212 (531)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555 555554444444 44555555555554443
No 124
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=88.59 E-value=35 Score=35.89 Aligned_cols=75 Identities=20% Similarity=0.273 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1267)
Q Consensus 518 LE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEel 592 (1267)
|+..+...+.....+..+.......+..+..++..+...++.+...+..+......|...+...+.++..|+.-.
T Consensus 29 LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~ 103 (140)
T PF10473_consen 29 LERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLN 103 (140)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333333333333333333333333333333333333333333333333333333333333333333
No 125
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.48 E-value=54 Score=37.91 Aligned_cols=32 Identities=16% Similarity=0.377 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1267)
Q Consensus 559 ele~kleelqkkIs~LEsqLk~LqsRireLEE 590 (1267)
.+.+++...+..+..+...++.+...|..+++
T Consensus 63 ~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~ 94 (265)
T COG3883 63 EIQSKIDELQKEIDQSKAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333
No 126
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=87.96 E-value=35 Score=40.30 Aligned_cols=147 Identities=20% Similarity=0.292 Sum_probs=74.9
Q ss_pred HHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000822 316 EALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEE 395 (1267)
Q Consensus 316 e~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eE 395 (1267)
+.|+..+...+..++.+...+......+...+..+.........++..+.....+ .. .--...+.....++.....+
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e-~~--~~D~~eL~~lr~eL~~~~~~ 224 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE-IE--SCDQEELEALRQELAEQKEE 224 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hh--hcCHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555544555555555555555554444421 11 11234455555555555555
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHH
Q 000822 396 LDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGA 471 (1267)
Q Consensus 396 Le~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~ 471 (1267)
+...+.....+...+..+...+..+......+...+..+.....+.. +--..|+..++..+.....-|+=
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r------~~t~~Ev~~Lk~~~~~Le~~~gw 294 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR------GWTRSEVKRLKAKVDALEKLTGW 294 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHHHCc
Confidence 55555555555555555555555555555555555555544221111 11233777777777766665553
No 127
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.18 E-value=94 Score=38.24 Aligned_cols=169 Identities=22% Similarity=0.227 Sum_probs=103.8
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHH----------HhhhhHHHHHHhccchHHHHHHHHHhhHHHH
Q 000822 426 ELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEE----------QHNETGAAAATASQRNLELEDIIRASNEAAE 495 (1267)
Q Consensus 426 eLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee----------~~~~he~~~~~~~qk~~EL~~qi~~~~~~~E 495 (1267)
+|....++....|.-.++.-||+-+.++|++.++|--+. --..-...+...+++..+|..|.+..+..+.
T Consensus 245 el~ae~kqh~v~~~ales~~sq~~e~~selE~llklkerl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll 324 (521)
T KOG1937|consen 245 ELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKERLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLL 324 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHHHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 344444455556666666666777777777766643222 2223344666777777888888888888887
Q ss_pred HHHHHHhhHhhhHHHHH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Q 000822 496 EAKSQLRELEPRFIAAE---QRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE--EKKQLHDQMNDYKDK 570 (1267)
Q Consensus 496 k~k~~l~~l~~~~~~~E---kk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~--ELeele~kleelqkk 570 (1267)
.-|.+|+.........- .++.+++.-+..+ ..++.....-..+|.+++..+-. ....+...|-++.+-
T Consensus 325 ~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~-------~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gn 397 (521)
T KOG1937|consen 325 QKKLQLREELKNLETEDEEIRRIQELEQDLEAV-------DEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGN 397 (521)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-------HHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhH
Confidence 77777754443332222 3334444333332 23333333334445555544433 245567788888888
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 571 ITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 571 Is~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
|......|..+...-++|.-+.+++.+.+..
T Consensus 398 iRKq~~DI~Kil~etreLqkq~ns~se~L~R 428 (521)
T KOG1937|consen 398 IRKQEQDIVKILEETRELQKQENSESEALNR 428 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8888888888888888888888888877766
No 128
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=86.13 E-value=61 Score=36.67 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=83.6
Q ss_pred HHHHhhhhhhhHHHhhHHHhHHHHhhhhhhHHHHHHHHHHHHhh-hhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhch
Q 000822 968 HEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAET-RKFELEETLLKLKNLESTVEELQTRSGHFERESGG 1046 (1267)
Q Consensus 968 ~E~~~~~~~~e~e~k~l~ekl~~~E~~~~~~~~~~~~a~~~a~~-~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~ 1046 (1267)
.++-+.+++.=...+-+..++..+...+..|+..|..|-....+ +. ...|.+++.||.++..++..+..+....
T Consensus 41 ~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA---r~al~~~~~le~~~~~~~~~~~~~~~~~-- 115 (225)
T COG1842 41 AKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA---REALEEKQSLEDLAKALEAELQQAEEQV-- 115 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33333333333355556666666666666777776666554442 22 1267779999999999988866666643
Q ss_pred hhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhh
Q 000822 1047 LVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL-----TSEVQGLQTQISAIMEENNSL 1121 (1267)
Q Consensus 1047 l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~-----~~~~k~lk~q~ee~eee~~~~ 1121 (1267)
.++++.+..++.||.++..+..+...+..- .+.-..+.....-+ .........-|++.+..++..
T Consensus 116 -----~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~-----akA~~~v~~~~~~~s~~sa~~~fer~e~kiee~ea~a~~~ 185 (225)
T COG1842 116 -----EKLKKQLAALEQKIAELRAKKEALKARKAA-----AKAQEKVNRSLGGGSSSSAMAAFERMEEKIEEREARAEAA 185 (225)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 256699999999999999996666544332 11333333333222 244555566666665555544
Q ss_pred H
Q 000822 1122 N 1122 (1267)
Q Consensus 1122 ~ 1122 (1267)
.
T Consensus 186 ~ 186 (225)
T COG1842 186 A 186 (225)
T ss_pred H
Confidence 4
No 129
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.70 E-value=46 Score=34.25 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000822 767 ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1267)
Q Consensus 767 eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~ 799 (1267)
+....+.+..+...+..+..-+++...+..-|+
T Consensus 93 e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh 125 (132)
T PF07926_consen 93 EASWEEQKEQLEKELSELEQRIEDLNEQNKLLH 125 (132)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777777777776666655
No 130
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=85.63 E-value=1.2e+02 Score=38.84 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000822 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1267)
Q Consensus 707 L~eqleevek~k~~LE~EieElkeqLeElE~~L 739 (1267)
++..+.+....+..|+.+++.+..++..+....
T Consensus 240 im~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~ 272 (629)
T KOG0963|consen 240 IMTELEDAQQRIVFLEREVEQLREQLAKANSSK 272 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 334444445555556666666666655555443
No 131
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=85.35 E-value=66 Score=35.68 Aligned_cols=138 Identities=20% Similarity=0.266 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhh
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDK---ERELTESLNAAADEKRKLQDTSN 726 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek---~reL~eqleevek~k~~LE~Eie 726 (1267)
.+...+..+.++.......+.+....-.++..-|..+..++..+...+...... +..+...+..+++.+..|.-+.+
T Consensus 31 sLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~e 110 (201)
T PF13851_consen 31 SLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHE 110 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555433332222 22344444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000822 727 GYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKA-AGLRETDVMEKLKSAEEQLEQQTRVLEQATSR 794 (1267)
Q Consensus 727 ElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~-~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~ 794 (1267)
-+...+..++..-+.|...++ ..=.+++- .|++.--++.|+..+..+++..++.|...-+.
T Consensus 111 vL~qr~~kle~ErdeL~~kf~-------~~i~evqQk~~~kn~lLEkKl~~l~~~lE~keaqL~evl~~ 172 (201)
T PF13851_consen 111 VLEQRFEKLEQERDELYRKFE-------SAIQEVQQKTGLKNLLLEKKLQALSEQLEKKEAQLNEVLAA 172 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555554444433 22222222 23445556777888888888888877765443
No 132
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=84.81 E-value=69 Score=35.50 Aligned_cols=148 Identities=19% Similarity=0.337 Sum_probs=100.5
Q ss_pred HHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHH
Q 000822 1020 LLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQK 1099 (1267)
Q Consensus 1020 l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q 1099 (1267)
|.-|+.|-..|.+|..+..+.+.....+..-|..+..-+.+++..+.+|..+|..- .+-+-....
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y---------------~kdK~~L~~ 90 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNY---------------EKDKQSLQN 90 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 34799999999999988777777766666667677788888888888887774332 122223334
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHHHHhHHHHH
Q 000822 1100 LTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEK-FALETRIKELE 1178 (1267)
Q Consensus 1100 ~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~~~-~~~~~~~~~~~ 1178 (1267)
+..+++.+..+|....-+...+...|.+++.|-+++-.+.+.-+- ...-+..-+ -.|+..+..|.
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~--------------evqQk~~~kn~lLEkKl~~l~ 156 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ--------------EVQQKTGLKNLLLEKKLQALS 156 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777778888888888888888888744443222 112222222 35778888888
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 000822 1179 ELLVNVETQFKEEVENVK 1196 (1267)
Q Consensus 1179 ~~~~~~~~~~~~~~~~~~ 1196 (1267)
..|...+++|.+=+....
T Consensus 157 ~~lE~keaqL~evl~~~n 174 (201)
T PF13851_consen 157 EQLEKKEAQLNEVLAAAN 174 (201)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 888888888887555433
No 133
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=84.35 E-value=1.2e+02 Score=37.73 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q 000822 518 LEQQLNLVELKSSDSEREVREF 539 (1267)
Q Consensus 518 LE~QL~eLq~K~~e~erei~eL 539 (1267)
++.++..++.++.+.+..+..|
T Consensus 166 l~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 166 IDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444443333333
No 134
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=84.33 E-value=78 Score=35.70 Aligned_cols=86 Identities=17% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Q 000822 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDY---------KDKITQLELIL 578 (1267)
Q Consensus 508 ~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleel---------qkkIs~LEsqL 578 (1267)
...++.++.....++..++..+......+..+......+...+......+......+... ......|...+
T Consensus 80 ~~eLeq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~~~~~~~~~~l~~a~~~~l~ae~ 159 (240)
T PF12795_consen 80 LEELEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQNLPPNGESPLSEAQRWLLQAEL 159 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 344444444455555555555555555555555555555555555555444444444432 33333444444
Q ss_pred HHHhHHHHHHHHHHH
Q 000822 579 NQSNTRSSELEEELR 593 (1267)
Q Consensus 579 k~LqsRireLEEele 593 (1267)
..+..++..++-.+.
T Consensus 160 ~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 160 AALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 135
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.97 E-value=1.8e+02 Score=39.50 Aligned_cols=251 Identities=19% Similarity=0.256 Sum_probs=136.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 682 ELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLK 761 (1267)
Q Consensus 682 ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~ 761 (1267)
+.......+..++..+......+..+..++......+...+.++.++.-.+.++.+.++......+.++.++..++..+=
T Consensus 677 e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if 756 (1141)
T KOG0018|consen 677 EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEIDEFGPEISEIKRKLQNREGEMKELEERMNKVEDRIF 756 (1141)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666677777777777777777777777777777777666666666666665544331
Q ss_pred -----Hhccc---------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhhc-ch--
Q 000822 762 -----AAGLR---------ETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITS-RD-- 824 (1267)
Q Consensus 762 -----~~~~~---------eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~-~~-- 824 (1267)
.-|++ -.++..++-..+.|+-.++-.|+=++- .....=.+...+.++ +++..++.+.. -+
T Consensus 757 ~~f~~~igv~ir~Yee~~~~~~~a~k~~ef~~q~~~l~~~l~fe~~--~d~~~~ve~~~~~v~-~~~~~~~~~~~~e~~~ 833 (1141)
T KOG0018|consen 757 KGFCRRIGVRIREYEERELQQEFAKKRLEFENQKAKLENQLDFEKQ--KDTQRRVERWERSVE-DLEKEIEGLKKDEEAA 833 (1141)
T ss_pred HHhhhhcCeeeehHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheec--ccHHHHHHHHHHHHH-HHHHhHHhhHHHHHHH
Confidence 11211 234455666666666666666654432 111111112222221 11112222220 00
Q ss_pred -------hHhhhH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc-----
Q 000822 825 -------SEAKSF-SEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKAN----- 891 (1267)
Q Consensus 825 -------sEa~~l-~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~----- 891 (1267)
.+...+ ....-+++..|++....+..++....-+..++ ...++.+.....++..+...+.
T Consensus 834 ~k~i~e~~~~e~k~k~~~~~~~~e~~e~~k~~~~~~~~~tkl~~~i-------~~~es~ie~~~~er~~lL~~ckl~~I~ 906 (1141)
T KOG0018|consen 834 EKIIAEIEELEKKNKSKFEKKEDEINEVKKILRRLVKELTKLDKEI-------TSIESKIERKESERHNLLSKCKLEDIE 906 (1141)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-------hhhhhHHHHHHHHHHHHHHHhhhcccc
Confidence 111111 12334555555555555555555555555555 6777777777777777665421
Q ss_pred -ccchh-----------hh-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 000822 892 -NSSSE-----------NE-LLVETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1267)
Q Consensus 892 -~~~~e-----------~~-~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~ 946 (1267)
-..++ ++ .|-+... |+-+|.+.+..|+....+.++.+ ++.... ....+++.
T Consensus 907 vPl~~gs~~d~~~~ieidy~~L~~~y~-L~~kl~e~~~~l~~~~Pn~kA~~-~~d~v~--~~~~~~Ef 970 (1141)
T KOG0018|consen 907 VPLSSGSMDDIVIGIEIDYSGLPREYK-LQQKLEEKQSVLNRIAPNLKALE-RLDEVR--FQEINEEF 970 (1141)
T ss_pred ccccCCCccccceecccccccccHHHH-HHHHHHHHHHHHHHhCcchHHHh-hhhhHH--HHHhhHHH
Confidence 11111 11 2223444 99999999999999988887765 444333 44444444
No 136
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.88 E-value=79 Score=35.39 Aligned_cols=9 Identities=22% Similarity=0.128 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 000822 587 ELEEELRIT 595 (1267)
Q Consensus 587 eLEEele~L 595 (1267)
.+..+.+.+
T Consensus 73 ~~~~erdq~ 81 (207)
T PF05010_consen 73 KLLKERDQA 81 (207)
T ss_pred HHHhhHHHH
Confidence 333333333
No 137
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=83.77 E-value=1.1e+02 Score=36.99 Aligned_cols=87 Identities=22% Similarity=0.325 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHN 467 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~ 467 (1267)
++..+..+|......+..++..+.-..+.+........-++..++....+|.|.-+.|-+-+-..--|.--++.|-+...
T Consensus 82 qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~~~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ 161 (499)
T COG4372 82 QLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRR 161 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666666666777777777778888877444444444444444444444444
Q ss_pred hhHHHHH
Q 000822 468 ETGAAAA 474 (1267)
Q Consensus 468 ~he~~~~ 474 (1267)
.-++++.
T Consensus 162 ql~aq~q 168 (499)
T COG4372 162 QLEAQAQ 168 (499)
T ss_pred HHHHHHH
Confidence 4444333
No 138
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=83.39 E-value=8.2 Score=42.18 Aligned_cols=101 Identities=21% Similarity=0.309 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000822 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1267)
Q Consensus 510 ~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLE 589 (1267)
+...++..+...+.++...+++....+..+...+..+...+......|..+...+..+...+..+...+.....-+..+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555555555555555555555555666666666666666666666666
Q ss_pred HHHHHHHHHHhhHHHHhhhhh
Q 000822 590 EELRITKERSAEDEDRANMSH 610 (1267)
Q Consensus 590 Eele~L~EeLeE~E~rak~~r 610 (1267)
+++..+.-++.-.+.+...+.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~ 171 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLE 171 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 666655555555444444443
No 139
>PF13514 AAA_27: AAA domain
Probab=83.37 E-value=2e+02 Score=39.70 Aligned_cols=82 Identities=27% Similarity=0.317 Sum_probs=47.8
Q ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhH
Q 000822 87 SSSRELLEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSEL 166 (1267)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~~~e~ 166 (1267)
|..+.|-.+-..++++..+|...... ......+...+..+...+..+...+.++......|.. +.-+-.-+. ++
T Consensus 147 g~~~~in~~l~~l~e~~~~l~~~~~~----~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler-~~~~~p~~~-~~ 220 (1111)
T PF13514_consen 147 GRKPEINQALKELKELERELREAEVR----AAEYQELQQALEEAEEELEELRAELKELRAELRRLER-LRRAWPLLA-EL 220 (1111)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHH-HH
Confidence 56677777777888888877776665 4444555566666666666666666666555554433 222222233 44
Q ss_pred HHHHHHHh
Q 000822 167 NAMKEALQ 174 (1267)
Q Consensus 167 ~~L~~~lq 174 (1267)
..|..+|.
T Consensus 221 ~~l~~~l~ 228 (1111)
T PF13514_consen 221 QQLEAELA 228 (1111)
T ss_pred HHHHHHHH
Confidence 55555554
No 140
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=82.80 E-value=1.1e+02 Score=36.25 Aligned_cols=25 Identities=8% Similarity=0.078 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 555 EEKKQLHDQMNDYKDKITQLELILN 579 (1267)
Q Consensus 555 ~ELeele~kleelqkkIs~LEsqLk 579 (1267)
.-+.++...|.+-+..+.+++..+-
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~ 99 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETY 99 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555555555555444
No 141
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=82.69 E-value=1.6e+02 Score=38.11 Aligned_cols=14 Identities=7% Similarity=0.392 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhh
Q 000822 960 VKEAEIQLHEAIQR 973 (1267)
Q Consensus 960 ~~~~~~q~~E~~~~ 973 (1267)
...++....+..++
T Consensus 504 ~~~le~~~~~~f~~ 517 (650)
T TIGR03185 504 LQQLEEEITKSFKK 517 (650)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555554
No 142
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=82.67 E-value=1.7e+02 Score=38.41 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=22.8
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 504 LEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1267)
Q Consensus 504 l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeq 542 (1267)
+............-|..|+..+..++..++..+..|..+
T Consensus 185 ~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~ 223 (754)
T TIGR01005 185 GAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQ 223 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555666666666666666666666666543
No 143
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=82.49 E-value=94 Score=35.26 Aligned_cols=182 Identities=19% Similarity=0.297 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhh-cc
Q 000822 746 LNMTQERLESIEKDLKAA-GLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANIT-SR 823 (1267)
Q Consensus 746 l~l~q~k~esiE~~l~~~-~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~-~~ 823 (1267)
++....++..|++++..- --+-..-+.+......++..++..|+.+.++|.+.. ..+....+..++.-.+.++ ..
T Consensus 7 L~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~~E~k~R~E~~---~~lq~~~e~~i~~~~~~v~~~~ 83 (247)
T PF06705_consen 7 LASINERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALEAEVKRRVESN---KKLQSKFEEQINNMQERVENQI 83 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443211 111445567788888999999999999999999987 4455566666666444444 33
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccch
Q 000822 824 DSEAKSFSEKLKNLEGQVKMYEEQLAEAA--------GKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSS 895 (1267)
Q Consensus 824 ~sEa~~l~e~LKKLE~qikele~ql~ea~--------rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~ 895 (1267)
..=..++...+..|...+..++..+..-. ..+..+..++..|...+..--..+.+-+..+-.-... ....
T Consensus 84 ~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~krl~e--~~~~ 161 (247)
T PF06705_consen 84 SEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILKRLEE--EENR 161 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 33333344556666666666666555544 3333444555444444333333332222222111111 0111
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 896 ENELLVETNNQLKSKVAELQELLDSAISEKEATGQQL 932 (1267)
Q Consensus 896 e~~~l~~~~~~Lesei~eLqe~Le~a~~ere~aee~l 932 (1267)
-+..+-..+..=++.+..|...++.....+...++.|
T Consensus 162 l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~~e~f 198 (247)
T PF06705_consen 162 LQEKIEKEKNTRESKLSELRSELEEVKRRREKGDEQF 198 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 1222224444445555555555555555554444333
No 144
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=82.33 E-value=1.7e+02 Score=38.06 Aligned_cols=94 Identities=24% Similarity=0.340 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 000822 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE-------LLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEE 779 (1267)
Q Consensus 707 L~eqleevek~k~~LE~EieElkeqLeElE~~Le-------~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ 779 (1267)
|....+.+..........+.++..+|..+...+. .+|-++.-++ .-+++.|+.+ -.+++..+ -+
T Consensus 519 Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ---~~y~~alqek---vsevEsrl---~E 589 (739)
T PF07111_consen 519 LSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQ---EVYERALQEK---VSEVESRL---RE 589 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHH---HH
Confidence 3333344444444444444444445554444443 4444433222 2267788877 45555544 47
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHH
Q 000822 780 QLEQQTRVLEQATSRNSELESLHESLMRESEMKL 813 (1267)
Q Consensus 780 ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~L 813 (1267)
++..|++-|+.+++-.+-++ -.-..++-+.
T Consensus 590 ~L~~~E~rLNeARREHtKaV----VsLRQ~qrqa 619 (739)
T PF07111_consen 590 QLSEMEKRLNEARREHTKAV----VSLRQIQRQA 619 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 78888899998888887777 4444444443
No 145
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=82.33 E-value=1.4e+02 Score=37.05 Aligned_cols=209 Identities=18% Similarity=0.264 Sum_probs=112.4
Q ss_pred HHHHHHHhHHHHHhhhhHhhhhhHhHHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhH
Q 000822 255 EVEGQMASLQEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASES 334 (1267)
Q Consensus 255 ~~e~~~~~l~ee~~~~~d~~~~~~k~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~ 334 (1267)
..-+.|..|+.+...++++|..--|+-..++.+...- +.|.-|..++...+.
T Consensus 268 ~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~----------------------------r~l~~D~nk~~~~~~ 319 (622)
T COG5185 268 IINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKW----------------------------RALKSDSNKYENYVN 319 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHhhhHHHHHHHHH
Confidence 4555666666666666666666555443333322211 124445555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 335 QAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNA---RESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1267)
Q Consensus 335 ~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~---~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~ 411 (1267)
.++-.+..--..+..|...|..++++|+.|.+++++=-.. ...--+.+...+++-.++-.+|+...-...++.+.+-
T Consensus 320 ~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~ 399 (622)
T COG5185 320 AMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVK 399 (622)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 5544443333777888888888888888888877332222 2223345555666666666666666666666666665
Q ss_pred HhHhhHHHhhhhhHHHHHHHhhhhh---hhhhhhhhhhhhh-------------hchHHH-HHHHhcHHHHhhhhHHHHH
Q 000822 412 DLTGNIARMKELCSELEEKLRNSDE---NFCKTDSLLSQAL-------------ANNAEL-ELKLKSLEEQHNETGAAAA 474 (1267)
Q Consensus 412 DLessieeL~e~~eeLEeeL~~~~~---e~~K~e~~lsq~~-------------~~~~El-~~~~k~lee~~~~he~~~~ 474 (1267)
+-. .+....-+.|+..+..... +..-+-+.+..+. --++-+ +..++.+++.+...--.+.
T Consensus 400 ~~~---leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~ 476 (622)
T COG5185 400 SRK---LEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIK 476 (622)
T ss_pred hHH---HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHH
Confidence 555 3444445555555555443 4444433222220 000000 1234666666666666666
Q ss_pred HhccchHHHHHHHHHhhHHH
Q 000822 475 TASQRNLELEDIIRASNEAA 494 (1267)
Q Consensus 475 ~~~qk~~EL~~qi~~~~~~~ 494 (1267)
+--.|+.-|++.+..++.-.
T Consensus 477 ~e~nksi~Lee~i~~~~~~i 496 (622)
T COG5185 477 TEENKSITLEEDIKNLKHDI 496 (622)
T ss_pred HHhccceeHHHHhhhHHhHH
Confidence 66666666666666544433
No 146
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.44 E-value=21 Score=43.51 Aligned_cols=88 Identities=26% Similarity=0.316 Sum_probs=57.6
Q ss_pred HHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHH
Q 000822 990 VLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQ 1069 (1267)
Q Consensus 990 ~~E~~~~~~~~~~~~a~~~a~~~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~ 1069 (1267)
.++++-.+|+...++|..+... +....-..+.+|.+...+++++.....+.....+-|-.+.++....-.++++++
T Consensus 348 qlen~k~~~e~~~~e~~~l~~~----~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~ 423 (493)
T KOG0804|consen 348 QLENQKQYYELLITEADSLKQE----SSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE 423 (493)
T ss_pred HHHhHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455556666777766554333 323333488888888888888887777766666777666677667777777777
Q ss_pred HhhhHhhhhhhH
Q 000822 1070 AKLSATIVEKDE 1081 (1267)
Q Consensus 1070 ~ql~~~~~e~~~ 1081 (1267)
-.+..+...++.
T Consensus 424 e~~~~~~~s~d~ 435 (493)
T KOG0804|consen 424 EREKEALGSKDE 435 (493)
T ss_pred HHHHHHHHHHHH
Confidence 765555555554
No 147
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=81.15 E-value=59 Score=38.49 Aligned_cols=50 Identities=16% Similarity=0.150 Sum_probs=25.5
Q ss_pred HHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhH
Q 000822 483 LEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDS 532 (1267)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~ 532 (1267)
|...++.++.-.......+.-+...+-....+...|...+..++.-.+++
T Consensus 149 L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~ 198 (312)
T smart00787 149 LDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDEL 198 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33444444444444444445555555555555555555555555444443
No 148
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=80.01 E-value=1.4e+02 Score=35.66 Aligned_cols=25 Identities=12% Similarity=0.236 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 568 KDKITQLELILNQSNTRSSELEEEL 592 (1267)
Q Consensus 568 qkkIs~LEsqLk~LqsRireLEEel 592 (1267)
...+..+..++..+..++..+...+
T Consensus 143 ~~~~~~l~~~i~~~~~~i~~~~~~l 167 (423)
T TIGR01843 143 RAQLELILAQIKQLEAELAGLQAQL 167 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 149
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=79.88 E-value=35 Score=38.21 Aligned_cols=81 Identities=27% Similarity=0.385 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhh
Q 000822 356 AKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1267)
Q Consensus 356 ~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~ 435 (1267)
....-+.++..++++.++.++.+.+.+.++++.+.+++..|..++.....++..+..|-.....|..-.++|++.+.-..
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e 211 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPE 211 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcccccchH
Confidence 34456677888999999999999999999999999999999999999999999998888888888777777777655443
Q ss_pred h
Q 000822 436 E 436 (1267)
Q Consensus 436 ~ 436 (1267)
.
T Consensus 212 ~ 212 (290)
T COG4026 212 E 212 (290)
T ss_pred H
Confidence 3
No 150
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=79.02 E-value=1.2e+02 Score=37.53 Aligned_cols=25 Identities=4% Similarity=0.182 Sum_probs=15.0
Q ss_pred HhhhhhHHHHHHHhhhhhhhhhhhh
Q 000822 419 RMKELCSELEEKLRNSDENFCKTDS 443 (1267)
Q Consensus 419 eL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1267)
.......+|+..+......+...|.
T Consensus 158 ~~~~~~~fl~~ql~~~~~~L~~ae~ 182 (498)
T TIGR03007 158 DSDSAQRFIDEQIKTYEKKLEAAEN 182 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666655565
No 151
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=77.40 E-value=1.3e+02 Score=33.70 Aligned_cols=183 Identities=20% Similarity=0.308 Sum_probs=87.1
Q ss_pred HHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 323 TQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKE 402 (1267)
Q Consensus 323 ~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~ 402 (1267)
+-+|.++|..+...+.++.-=...|-.|+.++......+......+ ..+...+..-...+..-.++|......
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~-------~~l~~~~~~K~~ELE~ce~ELqr~~~E 81 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQI-------QELQDSLRTKQLELEVCENELQRKKNE 81 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhhHhHHHhHHHHHHHhCH
Confidence 4567777777777666665555555555555544444444444443 333333444444444444444444444
Q ss_pred HHHHHHHHHHhHhhHHHhhhhhHHH---HHH---HhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHh
Q 000822 403 KEALEAAMADLTGNIARMKELCSEL---EEK---LRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATA 476 (1267)
Q Consensus 403 keslEk~i~DLessieeL~e~~eeL---Eee---L~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~ 476 (1267)
...+...+..+...+..|......+ ... +...+.-...+.+.-.-..+-..+++.++..|- ..
T Consensus 82 a~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~-----------~e 150 (202)
T PF06818_consen 82 AELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQ-----------RE 150 (202)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHH-----------HH
Confidence 4444444444444444443333332 000 000000000111100011122234444443333 33
Q ss_pred ccchHHHHHHHHHhhHHHHHHHHHH----hhHhhhHHHHHHHHHHHHHHHH
Q 000822 477 SQRNLELEDIIRASNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLN 523 (1267)
Q Consensus 477 ~qk~~EL~~qi~~~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~QL~ 523 (1267)
|+++.+...-|+.=+...-..|..+ +.|+..-..-.++...|+..+.
T Consensus 151 r~~~e~q~~~Fe~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 151 RQRREEQRSSFEQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4444445555666555555566555 7888888888888887777653
No 152
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=77.35 E-value=60 Score=32.71 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhh-cchhHhhhHHHHHHHHHHHHHHHHH
Q 000822 768 TDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANIT-SRDSEAKSFSEKLKNLEGQVKMYEE 846 (1267)
Q Consensus 768 ee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~-~~~sEa~~l~e~LKKLE~qikele~ 846 (1267)
+.++..+..|+-+|..++.+||.+.-.+.++. .-+ ++|.+.+ ++.....+++..+.-|+.+|.++-.
T Consensus 5 ~~l~as~~el~n~La~Le~slE~~K~S~~eL~----kqk--------d~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~ 72 (107)
T PF09304_consen 5 EALEASQNELQNRLASLERSLEDEKTSQGELA----KQK--------DQLRNALQSLQAQNASRNQRIAELQAKIDEARR 72 (107)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHH----HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHH----HhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788888899999999999988888885 222 2455555 6666666666665555555555544
Q ss_pred HHHH
Q 000822 847 QLAE 850 (1267)
Q Consensus 847 ql~e 850 (1267)
.++.
T Consensus 73 ~le~ 76 (107)
T PF09304_consen 73 NLED 76 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 153
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.77 E-value=1.4e+02 Score=34.04 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=31.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000822 668 GSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1267)
Q Consensus 668 eLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le 740 (1267)
.|.++..++..+..-+.......+.........+..+.++......+.........-+..-..-|......+.
T Consensus 186 ~L~~~~~kL~Dl~~~l~eA~~~~~ea~~ln~~n~~~l~~~~~k~~~l~~~~~~~~~~L~~a~~~L~~a~~ll~ 258 (264)
T PF06008_consen 186 DLNDYNAKLQDLRDLLNEAQNKTREAEDLNRANQKNLEDLEKKKQELSEQQNEVSETLKEAEDLLDQANDLLQ 258 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444333333334444444444444444444444444444444444443
No 154
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=76.74 E-value=1.3e+02 Score=33.38 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=30.0
Q ss_pred HHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccc
Q 000822 418 ARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQR 479 (1267)
Q Consensus 418 eeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk 479 (1267)
..+.+|..-|+..++.....+.+....+...-++.-.++.....++..+...+.+|..+-.+
T Consensus 19 d~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~ 80 (221)
T PF04012_consen 19 DKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAA 80 (221)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34444444444445555555544455444444444455555555555555555444444333
No 155
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=76.62 E-value=1.1e+02 Score=32.78 Aligned_cols=152 Identities=19% Similarity=0.219 Sum_probs=103.5
Q ss_pred chhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000822 301 SKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEA 380 (1267)
Q Consensus 301 ~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~e 380 (1267)
.+.++..++.+|...+. ++..+ --+|.+-++..-..|...|+.+..++..+...+---+-..+-...
T Consensus 18 lk~~l~k~~~ql~~ke~----lge~L---------~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~ke 84 (177)
T PF13870_consen 18 LKHQLAKLEEQLRQKEE----LGEGL---------HLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKE 84 (177)
T ss_pred HHHHHHHHHHHHHHHHH----hcCcc---------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777777776666 22211 124555555666677777777777777777777666666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh-----hhhhhhhhhhhhhhchHHH
Q 000822 381 VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE-----NFCKTDSLLSQALANNAEL 455 (1267)
Q Consensus 381 kL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~-----e~~K~e~~lsq~~~~~~El 455 (1267)
++......+..+..+|.........+...+..+......+.....+|....+-... .|-++-. ++
T Consensus 85 Kl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~----------~~ 154 (177)
T PF13870_consen 85 KLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKE----------EV 154 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH----------HH
Confidence 77777777777777777777777777777777777777777666666666665543 4666666 78
Q ss_pred HHHHhcHHHHhhhhHHHHHH
Q 000822 456 ELKLKSLEEQHNETGAAAAT 475 (1267)
Q Consensus 456 ~~~~k~lee~~~~he~~~~~ 475 (1267)
..+++++..+...|+..--.
T Consensus 155 ~~l~~~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 155 EELRKEIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888777777655433
No 156
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=76.18 E-value=1.7e+02 Score=34.62 Aligned_cols=81 Identities=9% Similarity=0.137 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 678 ELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIE 757 (1267)
Q Consensus 678 ~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE 757 (1267)
.....+..+..++..........+..+..|..++-+++...+.+-.+.+++...|...-..-..|..++.-++.+-...-
T Consensus 210 ~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~ 289 (306)
T PF04849_consen 210 EANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECM 289 (306)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444333344444444556666666667777777777777777777665555566666555555544333
Q ss_pred H
Q 000822 758 K 758 (1267)
Q Consensus 758 ~ 758 (1267)
+
T Consensus 290 ~ 290 (306)
T PF04849_consen 290 A 290 (306)
T ss_pred H
Confidence 3
No 157
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=75.94 E-value=59 Score=37.59 Aligned_cols=94 Identities=20% Similarity=0.242 Sum_probs=44.7
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 476 ASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEE 555 (1267)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ 555 (1267)
+-||+.+|+.|+|-++-------=+|+.|++.+.-.+.+...-......|.-....+--....+.....++.-++..++.
T Consensus 16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~ 95 (307)
T PF10481_consen 16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKES 95 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHH
Confidence 45677888887775332111111123555555544444443333333444444444444444444455555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 000822 556 EKKQLHDQMNDYKD 569 (1267)
Q Consensus 556 ELeele~kleelqk 569 (1267)
.++-+.++++....
T Consensus 96 qv~~lEgQl~s~Kk 109 (307)
T PF10481_consen 96 QVNFLEGQLNSCKK 109 (307)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555444444
No 158
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.58 E-value=1.6e+02 Score=33.87 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=25.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 902 ETNNQLKSKVAELQELLDSAISEKEATG 929 (1267)
Q Consensus 902 ~~~~~Lesei~eLqe~Le~a~~ere~ae 929 (1267)
.+|.-|++++++-+..|++.++-+..|-
T Consensus 147 ErnAfLESELdEke~llesvqRLkdEar 174 (333)
T KOG1853|consen 147 ERNAFLESELDEKEVLLESVQRLKDEAR 174 (333)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999988875
No 159
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=75.39 E-value=3.4e+02 Score=37.64 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000822 694 EVALQMANDKERELTESLNAAADEKRKLQDTSN 726 (1267)
Q Consensus 694 Et~Lee~rek~reL~eqleevek~k~~LE~Eie 726 (1267)
...+...+..+..|....+..-....+|+.--.
T Consensus 382 ~~ll~~rr~LL~~L~~~~~~~l~~l~~L~~~q~ 414 (1109)
T PRK10929 382 DAQLRTQRELLNSLLSGGDTLILELTKLKVANS 414 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555444443333333333333
No 160
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=75.03 E-value=66 Score=33.04 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=14.5
Q ss_pred HHHHHHhcHHHHhhhhHHHHHHhccch
Q 000822 454 ELELKLKSLEEQHNETGAAAATASQRN 480 (1267)
Q Consensus 454 El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1267)
++..+...+.+....|.+...++-.|.
T Consensus 69 ~~~~L~~el~~l~~ry~t~LellGEK~ 95 (120)
T PF12325_consen 69 EVEELEQELEELQQRYQTLLELLGEKS 95 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchH
Confidence 444455555555555555555555554
No 161
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=74.30 E-value=3.5e+02 Score=37.27 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=27.3
Q ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHh
Q 000822 756 IEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESL 805 (1267)
Q Consensus 756 iE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~ 805 (1267)
+...|...|+.+........-....+..+...+.........+......+
T Consensus 754 ~~~~L~~~~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ 803 (1047)
T PRK10246 754 FDTALQASVFDDQQAFLAALLDEETLTQLEQLKQNLENQRQQAQTLVTQT 803 (1047)
T ss_pred HHHHHHhCCCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677776665544433344455556666666655555555333333
No 162
>PRK11281 hypothetical protein; Provisional
Probab=73.74 E-value=3.7e+02 Score=37.32 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh
Q 000822 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYK--------DKITQLELILNQSN 582 (1267)
Q Consensus 511 ~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelq--------kkIs~LEsqLk~Lq 582 (1267)
.+.+...++.+++..+..+.+.+.++........+.++.+......+.+....++... .....++..+..+.
T Consensus 126 LEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~~L~~~~~~~~~l~~~~~~~l~ae~~~l~ 205 (1113)
T PRK11281 126 LESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLN 205 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555555555555555555555554443321 22333444444444
Q ss_pred HHHHHHHHHHH
Q 000822 583 TRSSELEEELR 593 (1267)
Q Consensus 583 sRireLEEele 593 (1267)
.++.....++.
T Consensus 206 ~~~~~~~~~l~ 216 (1113)
T PRK11281 206 AQNDLQRKSLE 216 (1113)
T ss_pred HHHHHHHHHHh
Confidence 44444444443
No 163
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=73.35 E-value=1.7e+02 Score=33.21 Aligned_cols=190 Identities=18% Similarity=0.173 Sum_probs=112.3
Q ss_pred HHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 305 LLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKT 384 (1267)
Q Consensus 305 l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e 384 (1267)
|+.+|+...--++-+-+|..++..+++.+..+......+++.+..+......++..-......-++... ..+...+..
T Consensus 19 ~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LA--r~al~~~~~ 96 (225)
T COG1842 19 LDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLA--REALEEKQS 96 (225)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHH
Confidence 333444444455556678888888888888888888999999999999888888887777776654333 334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhh--hhchHHHHHHHhcH
Q 000822 385 QEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQA--LANNAELELKLKSL 462 (1267)
Q Consensus 385 ~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~--~~~~~El~~~~k~l 462 (1267)
....+..+...+.........+...+..|...|.+++....-|.-.......-.+=..+ ++-+ ++.-+.|+. +
T Consensus 97 le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~-~~~~s~~sa~~~fer----~ 171 (225)
T COG1842 97 LEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRS-LGGGSSSSAMAAFER----M 171 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCchhhHHHHHH----H
Confidence 55566666666666666666666666666666666665555554444333331111111 1111 233444444 4
Q ss_pred HHHhhhhHHHHHHhc----cchHHHHHHHHH------hhHHHHHHHHHH
Q 000822 463 EEQHNETGAAAATAS----QRNLELEDIIRA------SNEAAEEAKSQL 501 (1267)
Q Consensus 463 ee~~~~he~~~~~~~----qk~~EL~~qi~~------~~~~~Ek~k~~l 501 (1267)
++...+-++++..+- -.+..|..+|.+ ++..+...|..+
T Consensus 172 e~kiee~ea~a~~~~el~~~~~~dl~~e~a~~~~~~~v~~~La~lka~~ 220 (225)
T COG1842 172 EEKIEEREARAEAAAELAEGSGDDLDKEFAQAGAQSAVDSRLAALKARM 220 (225)
T ss_pred HHHHHHHHHHHHHhHHhhccCcccHHHHHHHhcccccHHHHHHHHHHhh
Confidence 444445555554444 344666666665 455555554443
No 164
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.24 E-value=1.3e+02 Score=39.65 Aligned_cols=96 Identities=21% Similarity=0.294 Sum_probs=64.1
Q ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhh--------HH
Q 000822 106 LERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQA--------EE 177 (1267)
Q Consensus 106 ~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~~~e~~~L~~~lq~--------~e 177 (1267)
+..+.....+|=.++..+.++...+.+..+++..+++++..+|..|..+ ...+--.++. |-
T Consensus 567 v~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R-----------~~~vl~~l~~~~P~LS~AEr 635 (717)
T PF10168_consen 567 VKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKR-----------VDRVLQLLNSQLPVLSEAER 635 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHhccCCCCCHHHH
Confidence 3334444455566677777777777777777777777777777777762 2222222222 35
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 000822 178 AKRKELAEVKEAFDGLSLEIEQSRSRLQELEHKLQ 212 (1267)
Q Consensus 178 e~~~~L~~~ke~lee~~~~l~~~kkk~qe~~~~L~ 212 (1267)
++.++|...+..+..+...+++-++++.-....+.
T Consensus 636 ~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~ 670 (717)
T PF10168_consen 636 EFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIE 670 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888888888899999998888877655543
No 165
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=73.20 E-value=2.5e+02 Score=35.02 Aligned_cols=155 Identities=15% Similarity=0.226 Sum_probs=114.6
Q ss_pred HHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 000822 657 KLEKKC-EEAEAGSKQYSDKVCELASELEAFQ---ARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKL 732 (1267)
Q Consensus 657 ~LEKK~-k~~eqeLae~~e~l~~Lk~ELE~le---kE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqL 732 (1267)
..++.+ ..|.+....+-.++..++...+.+- .++..+...+...+.+.+.|++..+.+......+.....++-..+
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l 332 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKL 332 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHH
Confidence 334444 3344444444555556666555544 566667778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH---HHHHHHHHHHHHHHHHHHHh----hhhhhhhHhHHHh
Q 000822 733 AEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVME---KLKSAEEQLEQQTRVLEQAT----SRNSELESLHESL 805 (1267)
Q Consensus 733 eElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~---k~k~~~~ql~~~~~~LE~e~----~~~~e~~~~~e~~ 805 (1267)
+.+...+...-.++..+++..+.+...+...|+.-++|+. -|-.+-+.|+-+.-..+..+ ++..+++ ..
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq----~~ 408 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQ----GI 408 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHH----HH
Confidence 9999999988899999999999999999999999998863 35566777777777777665 4555555 55
Q ss_pred hHhhHHHHHH
Q 000822 806 MRESEMKLQD 815 (1267)
Q Consensus 806 ~kk~E~~Lqe 815 (1267)
-+.+|-.++.
T Consensus 409 ~~slek~~~~ 418 (622)
T COG5185 409 FKSLEKTLRQ 418 (622)
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 166
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.17 E-value=2.6e+02 Score=35.36 Aligned_cols=81 Identities=17% Similarity=0.278 Sum_probs=70.2
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQS 581 (1267)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~L 581 (1267)
++-.-.+..+++.++.|-..++.++....+......+|.+..+.|.+.+..+...|+.+.--++.-...++.++.++...
T Consensus 327 rE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkA 406 (654)
T KOG4809|consen 327 RERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKA 406 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566788889999999999999999999999999999999999999999999999999999999999999998844
Q ss_pred h
Q 000822 582 N 582 (1267)
Q Consensus 582 q 582 (1267)
.
T Consensus 407 h 407 (654)
T KOG4809|consen 407 H 407 (654)
T ss_pred H
Confidence 3
No 167
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=72.01 E-value=3.2e+02 Score=35.78 Aligned_cols=77 Identities=26% Similarity=0.310 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000822 770 VMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLA 849 (1267)
Q Consensus 770 ~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ 849 (1267)
+++|..++++++.-.+-.|-...+ -.-|. .+|+.|+.-++.+...+-..-..-+.+.||..++..+-..|.
T Consensus 110 ~eekn~slqerLelaE~~l~qs~r-ae~lp--------eveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ 180 (916)
T KOG0249|consen 110 NEEKNRSLQERLELAEPKLQQSLR-AETLP--------EVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQ 180 (916)
T ss_pred hHHhhhhhhHHHHHhhHhhHhHHh-hhhhh--------hhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 477888888888777766655544 22222 678888888888886666666667889999999999888888
Q ss_pred HHHhHH
Q 000822 850 EAAGKY 855 (1267)
Q Consensus 850 ea~rk~ 855 (1267)
.|+.+.
T Consensus 181 rarqre 186 (916)
T KOG0249|consen 181 RARQRE 186 (916)
T ss_pred HHHHHH
Confidence 888443
No 168
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=71.65 E-value=1.1e+02 Score=37.56 Aligned_cols=72 Identities=18% Similarity=0.162 Sum_probs=54.3
Q ss_pred cchHHHHH-HHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 000822 478 QRNLELED-IIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTA 549 (1267)
Q Consensus 478 qk~~EL~~-qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsE 549 (1267)
+.+.+++. |+++.+...+......+++.....+.+...+-++..+..++.|+.....+.....+--..+...
T Consensus 339 ~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~kn 411 (493)
T KOG0804|consen 339 QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKN 411 (493)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566666 8888888888888888888888888888888888888888888888777776666443333333
No 169
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=70.79 E-value=2.9e+02 Score=34.90 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=83.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000822 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1267)
Q Consensus 334 ~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DL 413 (1267)
.+....+.++-..+.....+...+..++..+..+++-....+......+......+..++.+|..-+.+ .+.+++.+
T Consensus 416 ~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~N---YE~QLs~M 492 (518)
T PF10212_consen 416 SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRN---YEEQLSMM 492 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---HHHHHHHH
Confidence 455666666767777778888889999999999998888889999999999999999999998876654 78899999
Q ss_pred HhhHHHhhhhhHHHHHHHhhh
Q 000822 414 TGNIARMKELCSELEEKLRNS 434 (1267)
Q Consensus 414 essieeL~e~~eeLEeeL~~~ 434 (1267)
..++..|++.+..-.+++..+
T Consensus 493 SEHLasmNeqL~~Q~eeI~~L 513 (518)
T PF10212_consen 493 SEHLASMNEQLAKQREEIQTL 513 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888887765
No 170
>PRK10698 phage shock protein PspA; Provisional
Probab=70.72 E-value=1.9e+02 Score=32.63 Aligned_cols=159 Identities=16% Similarity=0.285 Sum_probs=79.6
Q ss_pred HHhhHHHhHHHHhhhhhhHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHH
Q 000822 980 EANNLNEKVSVLEGQIKSYEEQAREASTVAE-TRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDL 1058 (1267)
Q Consensus 980 e~k~l~ekl~~~E~~~~~~~~~~~~a~~~a~-~~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l 1058 (1267)
..+-+.-++..++..+..|+..|.-|..-.. .+. -.+|.+.+....++..|+..++....... +++..+
T Consensus 53 ~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLA---r~AL~~K~~~~~~~~~l~~~~~~~~~~~~-------~L~~~l 122 (222)
T PRK10698 53 EKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLA---RAALIEKQKLTDLIATLEHEVTLVDETLA-------RMKKEI 122 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3444444455555555555555544433221 111 11555677777777777777444444322 455777
Q ss_pred HHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000822 1059 ALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKL-----TSEVQGLQTQISAIMEENNSLNETYQNAKNELQ 1133 (1267)
Q Consensus 1059 ~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~-----~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~ 1133 (1267)
.+++.+|.++.........+...+ + ...++.+.+.-. ..+...+.+.|...+-++.-.... . -.-|+
T Consensus 123 ~~L~~ki~eak~k~~~L~aR~~~A-~----a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~~Ea~aea~~~~-~--~~~l~ 194 (222)
T PRK10698 123 GELENKLSETRARQQALMLRHQAA-S----SSRDVRRQLDSGKLDEAMARFESFERRIDQMEAEAESHGFG-K--QKSLD 194 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H----HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhHhhcc-C--CCCHH
Confidence 777777777777766555554432 2 223333333222 245555666666655555443210 0 01133
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 000822 1134 SVISQLEAQLNEKKATEETFKSEIESLKAQA 1164 (1267)
Q Consensus 1134 ~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~ 1164 (1267)
+-...|+ ..+....++..||+++
T Consensus 195 ~e~~~le--------~~~~ve~ELa~LK~~~ 217 (222)
T PRK10698 195 QQFAELK--------ADDEISEQLAALKAKM 217 (222)
T ss_pred HHHHHhh--------ccchHHHHHHHHHHHh
Confidence 3333332 2345677777777765
No 171
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=70.25 E-value=3.1e+02 Score=34.95 Aligned_cols=49 Identities=10% Similarity=0.084 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHh------hhhhHHHHHHHhhh
Q 000822 386 EAQVSNVNEELDKVSKEKEALEAAMADLTGNIARM------KELCSELEEKLRNS 434 (1267)
Q Consensus 386 eaef~eL~eELe~lr~~keslEk~i~DLessieeL------~e~~eeLEeeL~~~ 434 (1267)
-..+..+...+..+..........++-+...+.++ +..+++|+...+.+
T Consensus 167 ~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L 221 (563)
T TIGR00634 167 YQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRL 221 (563)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHH
Confidence 33334444444444444444444444444333333 23334455554444
No 172
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=69.73 E-value=2.1e+02 Score=32.86 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH
Q 000822 902 ETNNQLKSKVAELQEL--LDSAISEKEATGQQ 931 (1267)
Q Consensus 902 ~~~~~Lesei~eLqe~--Le~a~~ere~aee~ 931 (1267)
.+...|-..++.|+-. |++-...++..+.-
T Consensus 245 aRisalnivgDllRkvgalesklascrn~~kd 276 (333)
T KOG1853|consen 245 ARISALNIVGDLLRKVGALESKLASCRNLEKD 276 (333)
T ss_pred hhHHHHHHHHHHHHHhhhhHHHHHHHhhhhhh
Confidence 4555666666666666 66666666666533
No 173
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=69.66 E-value=2.7e+02 Score=34.10 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHH
Q 000822 1092 AIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSE 1156 (1267)
Q Consensus 1092 ~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e 1156 (1267)
-++-.++.++.+|..|+.++..|.-..+.-...|+.-.+...+...+|+.+|.-.-++.++|-+.
T Consensus 250 ~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~ 314 (552)
T KOG2129|consen 250 AEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRM 314 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999988888887776666666544
No 174
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.29 E-value=1.6e+02 Score=33.75 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000822 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEEL 862 (1267)
Q Consensus 832 e~LKKLE~qikele~ql~ea~rk~~~l~~El 862 (1267)
..|..++.+++..+..|..+..++..|...+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~ 42 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKL 42 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666655555555555
No 175
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=66.95 E-value=1.6e+02 Score=30.34 Aligned_cols=88 Identities=23% Similarity=0.301 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
+...|+..--.+..++....++...-..+..+|-+...+...+.... ..+..+...+.+++.+...+..=+.....
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~----~~~~~L~~el~~l~~ry~t~LellGEK~E 96 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALK----KEVEELEQELEELQQRYQTLLELLGEKSE 96 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 55555555556666666666666666666666666555555554444 44444444444444444444444444433
Q ss_pred HHHHHHHHHHHh
Q 000822 402 EKEALEAAMADL 413 (1267)
Q Consensus 402 ~keslEk~i~DL 413 (1267)
..+-+...+.|+
T Consensus 97 ~veEL~~Dv~Dl 108 (120)
T PF12325_consen 97 EVEELRADVQDL 108 (120)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 176
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=66.65 E-value=5.1e+02 Score=36.05 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000822 516 VELEQQLNLVELKSSDSEREVREFSEKLSQ 545 (1267)
Q Consensus 516 keLE~QL~eLq~K~~e~erei~eLeeqisk 545 (1267)
.+|++++......+.+..++.....++...
T Consensus 105 ~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~ 134 (1109)
T PRK10929 105 DALEQEILQVSSQLLEKSRQAQQEQDRARE 134 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 344444444444444444444444444433
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.94 E-value=2.9e+02 Score=32.90 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=30.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000822 682 ELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLL 739 (1267)
Q Consensus 682 ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~L 739 (1267)
++..+...+......+...+....++..++..+...+......+.++..++.++++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555555555555555555555555555555555544
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=64.79 E-value=1.9e+02 Score=34.95 Aligned_cols=129 Identities=19% Similarity=0.328 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh-hhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000822 773 KLKSAEEQLEQQTRVLEQAT-SRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEA 851 (1267)
Q Consensus 773 k~k~~~~ql~~~~~~LE~e~-~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea 851 (1267)
-=|.|..|+..+...+.... .-+.. ..++-.++..+++.+.+.+-= +|.+|--+=.+.+..+..+.++
T Consensus 217 DWR~hleqm~~~~~~I~~~~~~~~~~--------L~kl~~~i~~~lekI~sREk~---iN~qle~l~~eYr~~~~~ls~~ 285 (359)
T PF10498_consen 217 DWRSHLEQMKQHKKSIESALPETKSQ--------LDKLQQDISKTLEKIESREKY---INNQLEPLIQEYRSAQDELSEV 285 (359)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHH
Confidence 35778888888877776642 22222 335667777788888766543 3466655555566667778888
Q ss_pred HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHH---HHHHHhHHHHHHHHH
Q 000822 852 AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLV---ETNNQLKSKVAELQE 916 (1267)
Q Consensus 852 ~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~---~~~~~Lesei~eLqe 916 (1267)
+.+...+..-+......|..+-..+...++++++-...+ +.++-|+ ....+|..+|.+|--
T Consensus 286 ~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~m----tD~sPlv~IKqAl~kLk~EI~qMdv 349 (359)
T PF10498_consen 286 QEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSM----TDGSPLVKIKQALTKLKQEIKQMDV 349 (359)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 888888888887777788888888888888887766544 4555554 667788888877643
No 179
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=63.27 E-value=4.1e+02 Score=33.79 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=58.4
Q ss_pred hhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000822 302 KLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAV 381 (1267)
Q Consensus 302 Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ek 381 (1267)
++.|+|.|+.|..-+.-..-++.+|..+..+.+.-...+..+......|+..+-.....+...-.-++.....+...-.+
T Consensus 103 ~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~~~i~~~~ely~elr~~vl~n~~~~Ge~~~~lEk~Le~i~~~l~q 182 (570)
T COG4477 103 KHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQ 182 (570)
T ss_pred hhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 38999999999998888888899999888877666666666666666666666666655555555554444555554444
Q ss_pred HHHHH
Q 000822 382 LKTQE 386 (1267)
Q Consensus 382 L~e~e 386 (1267)
+-.+.
T Consensus 183 f~~lt 187 (570)
T COG4477 183 FVELT 187 (570)
T ss_pred HHHhc
Confidence 44433
No 180
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=62.93 E-value=4.1e+02 Score=33.66 Aligned_cols=322 Identities=15% Similarity=0.192 Sum_probs=151.9
Q ss_pred HHHHHHHhhhcchhHh-hhHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000822 812 KLQDALANITSRDSEA-KSFSEKLKNLEGQVKMYEEQLAEA-----AGKYALLKEELDSYFIKVTSLESTNEELQRQVVE 885 (1267)
Q Consensus 812 ~Lqeale~~~~~~sEa-~~l~e~LKKLE~qikele~ql~ea-----~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE 885 (1267)
.-+.++-++.+.-++. .-++.-..+|+++|+.+=..+.-. .+-+..+++-+..+.-.++..+.++-..+.-+.+
T Consensus 146 ~re~a~~aL~k~qe~~~~k~d~E~arm~aqi~~l~eEmS~r~l~reakl~~~lqk~f~alEk~mka~e~~rl~~E~~lre 225 (531)
T PF15450_consen 146 GREDACSALQKSQEEDSQKVDNEVARMQAQITKLGEEMSLRFLKREAKLCSFLQKSFLALEKRMKAQESSRLRTERSLRE 225 (531)
T ss_pred hHHHHHHHHHhcchhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344667777333333 333444688999998886654432 2444566666644444455555555544443321
Q ss_pred HHHhhcccchhhhHHHHHH-HHhHHHHHHHHHHHHHHH----HHHHHHHHHHhhcccchhHHHHHHHHhhhhhhhhHHhH
Q 000822 886 ANNKANNSSSENELLVETN-NQLKSKVAELQELLDSAI----SEKEATGQQLASHMNTVTELTEQHSRALELHSATEARV 960 (1267)
Q Consensus 886 ~~~~~~~~~~e~~~l~~~~-~~Lesei~eLqe~Le~a~----~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~~e~~~ 960 (1267)
++..=|.+. ...+.++..|+...+-.- .++--.-+++++.-..|..|+--. ...+..++ ++
T Consensus 226 ----------ElE~rW~~lq~l~Ee~l~al~gq~ev~~~~~~~E~~~l~eq~~~ld~AV~~Ltk~v---~~~q~sL~-kv 291 (531)
T PF15450_consen 226 ----------ELESRWQKLQELTEERLRALQGQQEVGLGGIQSEESKLLEQCRKLDEAVAQLTKFV---QQNQKSLN-KV 291 (531)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHH-HH
Confidence 222223221 334566666666665322 222222333344333333333322 11111111 22
Q ss_pred HHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHhhhhhhHHHHHHHHHHHHhhhhH-----------HHHHHHHH-HHhhHH
Q 000822 961 KEAEIQLHEAIQRFTQRDIEANNLNEKVSVLEGQIKSYEEQAREASTVAETRKF-----------ELEETLLK-LKNLES 1028 (1267)
Q Consensus 961 ~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E~~~~~~~~~~~~a~~~a~~~k~-----------e~e~~l~~-~k~LE~ 1028 (1267)
--++.+-..+..+ ..++.+-+|.+++. -| ..|..+|+.+.. |....++. ++.|-.
T Consensus 292 l~aE~kaR~~k~~--~e~sk~eeL~~~L~-------~~----lea~q~agkla~Qe~~~~ld~LqEksqile~sv~~l~~ 358 (531)
T PF15450_consen 292 LNAEQKARDAKEK--LEESKAEELATKLQ-------EN----LEAMQLAGKLAQQETQSELDLLQEKSQILEDSVAELMR 358 (531)
T ss_pred HhhHHHHHHHHhH--HHHhhHHHHHHHHH-------HH----HHHHHHhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222222 22233333333333 22 222333333332 22222333 444455
Q ss_pred HHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 000822 1029 TVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQ 1108 (1267)
Q Consensus 1029 ~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk 1108 (1267)
.|++|..++.-+-. ++.-+..-+..||.++..+..+..+.... .|-....-+...++.++
T Consensus 359 ~lkDLd~~~~aLs~----------rld~qEqtL~~rL~e~~~e~~~~~r~~le----------kl~~~q~e~~~~l~~v~ 418 (531)
T PF15450_consen 359 QLKDLDDHILALSW----------RLDLQEQTLNLRLSEAKNEWESDERKSLE----------KLDQWQNEMEKHLKEVQ 418 (531)
T ss_pred HHHHHHHHHHHHhh----------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 55555544332222 45566677778888887765554433333 22222222222333333
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH-HHHHH--------HhHHHHHH
Q 000822 1109 TQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAE-KFALE--------TRIKELEE 1179 (1267)
Q Consensus 1109 ~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~~-~~~~~--------~~~~~~~~ 1179 (1267)
.-++++--+.+-++.++...+++++--| + .-..+..++|..+|..++- -|.+| ..|-++-+
T Consensus 419 eKVd~LpqqI~~vs~Kc~~~Ksd~d~kI---------d-tE~k~R~~eV~~vRqELa~lLssvQ~~~e~~~~rkiaeiqg 488 (531)
T PF15450_consen 419 EKVDSLPQQIEEVSDKCDLHKSDSDTKI---------D-TEGKAREREVGAVRQELATLLSSVQLLKEDNPGRKIAEIQG 488 (531)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhhhhhhc---------c-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhHHHHHH
Confidence 3333333344556888999999998777 1 2234556777888877776 44444 36777778
Q ss_pred HHHHHHHHHHH
Q 000822 1180 LLVNVETQFKE 1190 (1267)
Q Consensus 1180 ~~~~~~~~~~~ 1190 (1267)
+|++..+.-.|
T Consensus 489 ~l~~~qi~kle 499 (531)
T PF15450_consen 489 KLATNQIMKLE 499 (531)
T ss_pred HHHHHHHHHHH
Confidence 88755544333
No 181
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=62.44 E-value=5.8e+02 Score=35.24 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=6.6
Q ss_pred HHHHhhHHHHHHHHHHH
Q 000822 721 LQDTSNGYNEKLAEAEN 737 (1267)
Q Consensus 721 LE~EieElkeqLeElE~ 737 (1267)
+...+..+...+..+..
T Consensus 782 l~~~i~~~~~~~~~~~~ 798 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQT 798 (1047)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444433333333
No 182
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=61.84 E-value=2.5e+02 Score=32.05 Aligned_cols=11 Identities=18% Similarity=0.250 Sum_probs=4.0
Q ss_pred HHHHHhhhHHH
Q 000822 685 AFQARTSSLEV 695 (1267)
Q Consensus 685 ~lekE~relEt 695 (1267)
.++.++..+++
T Consensus 57 qI~~DIn~lE~ 67 (230)
T PF10146_consen 57 QINQDINTLEN 67 (230)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 183
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=61.34 E-value=5e+02 Score=34.18 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=10.7
Q ss_pred HhhHhhhHHHHHHHHHHHHHHHHHHHH
Q 000822 501 LRELEPRFIAAEQRSVELEQQLNLVEL 527 (1267)
Q Consensus 501 l~~l~~~~~~~Ekk~keLE~QL~eLq~ 527 (1267)
..-|...+...+.+....+..+.....
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk~ 222 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYRA 222 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444444444443333
No 184
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=60.90 E-value=16 Score=43.14 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000822 508 FIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1267)
Q Consensus 508 ~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRire 587 (1267)
......++..|...++.+..-+.+....++.+...|..++..+..+...+..+...+......|+.|+..+..+...+.+
T Consensus 51 Vs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsN 130 (326)
T PF04582_consen 51 VSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSN 130 (326)
T ss_dssp -------------------------------------------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 33334444444444444444444444555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhhHHHHhhhh
Q 000822 588 LEEELRITKERSAEDEDRANMS 609 (1267)
Q Consensus 588 LEEele~L~EeLeE~E~rak~~ 609 (1267)
|........-.+..++.|.+.+
T Consensus 131 LksdVSt~aL~ItdLe~RV~~L 152 (326)
T PF04582_consen 131 LKSDVSTQALNITDLESRVKAL 152 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcchHhhHHHHHHHH
Confidence 5555555555555555444443
No 185
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=60.44 E-value=3.6e+02 Score=32.24 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 000822 641 LEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELE 684 (1267)
Q Consensus 641 LEk~K~RlqELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE 684 (1267)
+++.+.+...++..+.++-....++..+..-|+.+..++..++.
T Consensus 135 LEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 135 LEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555554
No 186
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=60.08 E-value=3.4e+02 Score=31.76 Aligned_cols=117 Identities=20% Similarity=0.242 Sum_probs=55.1
Q ss_pred hhhhhhh-hhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 000822 622 TSHSKLE-GTGKRVNELELLLEAEKYRIQ----ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVA 696 (1267)
Q Consensus 622 ~~k~kLE-eae~~leelEe~LEk~K~Rlq----ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~ 696 (1267)
.|+.-|- -+...+.+++..+++.+...+ .++..-.+|.|.-.+ ....+..+..++.+...+-..|..++..
T Consensus 7 EWKeGL~~~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK----~e~ek~e~s~LkREnq~l~e~c~~lek~ 82 (307)
T PF10481_consen 7 EWKEGLPTRALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQK----VEEEKNEYSALKRENQSLMESCENLEKT 82 (307)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHhhhhhhhhhhhhhHHHHHHHHHHH
Confidence 4444443 244555666666666644433 333333333333333 3333444455555554444444444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 697 LQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMT 749 (1267)
Q Consensus 697 Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~ 749 (1267)
-.. +.-.+.--+..+.-|+..+...+.+++-++..+..++.+++-.
T Consensus 83 rqK-------lshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErs 128 (307)
T PF10481_consen 83 RQK-------LSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERS 128 (307)
T ss_pred HHH-------hhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222222244455566666666666666666666666654433
No 187
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=59.77 E-value=14 Score=43.69 Aligned_cols=83 Identities=13% Similarity=0.306 Sum_probs=1.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 511 AEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEE 590 (1267)
Q Consensus 511 ~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEE 590 (1267)
.+-....|...++.+..++.++...+.++...+...+..|..+...+..++..+..+...|..+...+......+..|..
T Consensus 40 LEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs 119 (326)
T PF04582_consen 40 LESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQS 119 (326)
T ss_dssp ------------------------------------------------------------------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHH
Confidence 33333333344444444444444444444444444444444444444444444444444444443333333333333333
Q ss_pred HHH
Q 000822 591 ELR 593 (1267)
Q Consensus 591 ele 593 (1267)
...
T Consensus 120 ~v~ 122 (326)
T PF04582_consen 120 SVS 122 (326)
T ss_dssp HHH
T ss_pred hhh
Confidence 333
No 188
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=59.52 E-value=2.9e+02 Score=30.86 Aligned_cols=127 Identities=12% Similarity=0.134 Sum_probs=90.7
Q ss_pred HHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000822 308 LEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEA 387 (1267)
Q Consensus 308 LE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~ea 387 (1267)
+|+--.--+++.-+|..+|...+..+..+.-...++.+.+.++...+..+.........+-+|.+....- ........
T Consensus 22 ~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al--~~k~~~~~ 99 (219)
T TIGR02977 22 AEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAAL--IEKQKAQE 99 (219)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHH
Confidence 3333344556666788888899999999999999999999999999999999888888887666554432 34555566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~ 436 (1267)
.+..+...+..+......+...+.+|+..+..+......|--....+..
T Consensus 100 ~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a 148 (219)
T TIGR02977 100 LAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASS 148 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777777777777776666665555544444443
No 189
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=59.31 E-value=2e+02 Score=32.70 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000822 381 VLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1267)
Q Consensus 381 kL~e~eaef~eL~eELe~lr~~keslEk~i~DLes 415 (1267)
.|....+++..+..-+...+..+......+..+..
T Consensus 54 eLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~e 88 (230)
T PF10146_consen 54 ELRQINQDINTLENIIKQAESERNKRQEKIQRLYE 88 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444443
No 190
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.08 E-value=2.9e+02 Score=30.63 Aligned_cols=112 Identities=17% Similarity=0.228 Sum_probs=65.9
Q ss_pred HHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 000822 316 EALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEE 395 (1267)
Q Consensus 316 e~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eE 395 (1267)
++.+-++...|..++..+....-....+.+.+..+...+..+..........-.|..... +...+......+..+...
T Consensus 29 ~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~--al~~k~~~e~~~~~l~~~ 106 (221)
T PF04012_consen 29 EQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLARE--ALQRKADLEEQAERLEQQ 106 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 344445566666666677777777777777778888877777777766666654444332 333344444455555555
Q ss_pred HHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHH
Q 000822 396 LDKVSKEKEALEAAMADLTGNIARMKELCSELEE 429 (1267)
Q Consensus 396 Le~lr~~keslEk~i~DLessieeL~e~~eeLEe 429 (1267)
+.........+...+..+...|.++......|--
T Consensus 107 ~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 107 LDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555554444444433
No 191
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=58.48 E-value=4.2e+02 Score=32.33 Aligned_cols=21 Identities=5% Similarity=0.018 Sum_probs=11.0
Q ss_pred HHhhHHHHHHHhhhhhhhhhh
Q 000822 1023 LKNLESTVEELQTRSGHFERE 1043 (1267)
Q Consensus 1023 ~k~LE~~i~eLq~~~~~lE~e 1043 (1267)
+.-|+.++..++.++..++..
T Consensus 173 ~~fl~~ql~~~~~~l~~ae~~ 193 (444)
T TIGR03017 173 ALWFVQQIAALREDLARAQSK 193 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555544444
No 192
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=56.98 E-value=1.5e+02 Score=27.93 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 566 DYKDKITQLELILNQSNTRSSELEEEL 592 (1267)
Q Consensus 566 elqkkIs~LEsqLk~LqsRireLEEel 592 (1267)
.++..+..++..+..+..++..++..+
T Consensus 37 KLr~~~~e~e~~~~~l~~~~~~~e~~~ 63 (74)
T PF12329_consen 37 KLRAKIKELEKQIKELKKKLEELEKEL 63 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 193
>PRK11281 hypothetical protein; Provisional
Probab=56.45 E-value=7.4e+02 Score=34.58 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=18.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 905 NQLKSKVAELQELLDSAISEKEATGQQL 932 (1267)
Q Consensus 905 ~~Lesei~eLqe~Le~a~~ere~aee~l 932 (1267)
..|++.+.+++..|.+.+...-..+.++
T Consensus 124 ~qLEq~L~q~~~~Lq~~Q~~La~~NsqL 151 (1113)
T PRK11281 124 RQLESRLAQTLDQLQNAQNDLAEYNSQL 151 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777777777777776666665333
No 194
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=56.34 E-value=3.4e+02 Score=30.64 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=10.6
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHH
Q 000822 502 RELEPRFIAAEQRSVELEQQLNLV 525 (1267)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~QL~eL 525 (1267)
..+......+=..+..+..++..+
T Consensus 41 ~~~~~~i~~aP~~~~~l~~~l~~l 64 (240)
T PF12795_consen 41 AEYQKQIDQAPKEIRELQKELEAL 64 (240)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhh
Confidence 444444444444444444444444
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=54.13 E-value=1.7e+02 Score=32.76 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhhhhH
Q 000822 514 RSVELEQQLNLVELKSSDS 532 (1267)
Q Consensus 514 k~keLE~QL~eLq~K~~e~ 532 (1267)
++..++.++..++.++.++
T Consensus 94 rlp~le~el~~l~~~l~~~ 112 (206)
T PRK10884 94 RVPDLENQVKTLTDKLNNI 112 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 196
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=53.69 E-value=2.4e+02 Score=31.27 Aligned_cols=87 Identities=17% Similarity=0.279 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHH
Q 000822 348 ADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSEL 427 (1267)
Q Consensus 348 ~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeL 427 (1267)
-.+......+..+...+..++.+.-.........|.+++..+.+++.....+...++.....|..+.+....+.+.+...
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~ 178 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENA 178 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555666666655555567777888888888888888888888889999989999988888888887777
Q ss_pred HHHHhhh
Q 000822 428 EEKLRNS 434 (1267)
Q Consensus 428 EeeL~~~ 434 (1267)
+.....+
T Consensus 179 e~~F~~~ 185 (190)
T PF05266_consen 179 ELEFQSV 185 (190)
T ss_pred HHHHHHH
Confidence 7666654
No 197
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=53.57 E-value=4e+02 Score=30.57 Aligned_cols=114 Identities=29% Similarity=0.406 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 481 LELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQL 560 (1267)
Q Consensus 481 ~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeel 560 (1267)
.+|+..|.++......+...|. .+..+...|+.+....+.....+......+......|.........+-..+
T Consensus 8 ~Ele~rL~q~eee~~~a~~~L~-------e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~L 80 (246)
T PF00769_consen 8 QELEERLRQMEEEMRRAQEALE-------ESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQL 80 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555555555444443 344444445555555444455555555555555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 561 HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 561 e~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
..++..+...|..|.............|..++...+..+..
T Consensus 81 e~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 81 EQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666555554444
No 198
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.22 E-value=6.8e+02 Score=32.87 Aligned_cols=34 Identities=21% Similarity=0.401 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000822 1102 SEVQGLQTQISAIMEENNSLNETYQNAKNELQSV 1135 (1267)
Q Consensus 1102 ~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~ 1135 (1267)
-++.+||-++.+++--++++.+.|..---+.-+|
T Consensus 600 ~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~a 633 (716)
T KOG4593|consen 600 KEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDA 633 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888899999888888888887776554444443
No 199
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=52.15 E-value=3e+02 Score=28.76 Aligned_cols=70 Identities=19% Similarity=0.351 Sum_probs=31.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000822 529 SSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598 (1267)
Q Consensus 529 ~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~Ee 598 (1267)
.+.--.....+...+..+..++..+...+..+..++......+...+.....+...++.+...+....++
T Consensus 47 ~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee 116 (151)
T PF11559_consen 47 RDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEE 116 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444444444444444444444444444433333
No 200
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=51.52 E-value=2.6e+02 Score=33.18 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000822 673 SDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLE 740 (1267)
Q Consensus 673 ~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE~~Le 740 (1267)
...+..+..+.+.+..++..++............+-...+...-....+..+...+..++.-....++
T Consensus 63 ~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~ 130 (314)
T PF04111_consen 63 LQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLD 130 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333334444444444444444444444444444444444
No 201
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.07 E-value=3.8e+02 Score=29.66 Aligned_cols=111 Identities=21% Similarity=0.220 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 490 SNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKD 569 (1267)
Q Consensus 490 ~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqk 569 (1267)
+.+..+.....|..|+..=-+...-...|.. +-.+.......-.....+..++.........++..+..+..+|..++.
T Consensus 67 ~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~k-LL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~ 145 (190)
T PF05266_consen 67 SRSSFESLMKTLSELEEHGFNVKFLRSRLNK-LLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQR 145 (190)
T ss_pred cHHHHHHHHHHHHHHHHcCCccHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4555555555554444431122222222222 334444445555555555555555555555666666666666666666
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 570 KITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 570 kIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
....+..........+..+....+.+.+.+..
T Consensus 146 ~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~ 177 (190)
T PF05266_consen 146 QAAKLKEKKEAKDKEISRLKSEAEALKEEIEN 177 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555555555555566666555555555555
No 202
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=51.02 E-value=99 Score=28.81 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHH
Q 000822 836 NLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQ 915 (1267)
Q Consensus 836 KLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLq 915 (1267)
+|++.+..|+..++.+.+++......+ +.+-.+.|-+...+.... ..+..|.+++..|+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~--------------k~L~~ERd~~~~~l~~a~-------~e~~~Lk~E~e~L~ 60 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIEN--------------KRLRRERDSAERQLGDAY-------EENNKLKEENEALR 60 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 466666677666666666655554444 444455555555442222 45566666666666
Q ss_pred HHHHHH
Q 000822 916 ELLDSA 921 (1267)
Q Consensus 916 e~Le~a 921 (1267)
.+|++.
T Consensus 61 ~el~~~ 66 (69)
T PF14197_consen 61 KELEEL 66 (69)
T ss_pred HHHHHh
Confidence 665543
No 203
>PF15294 Leu_zip: Leucine zipper
Probab=50.99 E-value=4e+02 Score=31.34 Aligned_cols=145 Identities=21% Similarity=0.297 Sum_probs=92.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Q 000822 1085 QLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQA 1164 (1267)
Q Consensus 1085 ~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~ 1164 (1267)
-+.+--+++++=..++..|++.+..+.-.+.+++.-+......++....+.... .-+-..-..-..++..+.-+++.+
T Consensus 129 ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k--~~~~~~~q~l~dLE~k~a~lK~e~ 206 (278)
T PF15294_consen 129 LLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQKGK--KDLSFKAQDLSDLENKMAALKSEL 206 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--ccccccccchhhHHHHHHHHHHHH
Confidence 344456678888888888899999999999999888888888777743332210 000000011122444444454432
Q ss_pred H-HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhhhhhhhhhhhhhhhhhH---HHHHHHHHHHHh
Q 000822 1165 A-EKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNAL---YEQVIQLQRELQ 1235 (1267)
Q Consensus 1165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 1235 (1267)
- --..+.++..-|+..|+.+ +-+|-.||..-.-.+.+|+.||+.-+...+=++-| ++|..+|++.|.
T Consensus 207 ek~~~d~~~~~k~L~e~L~~~----KhelL~~QeqL~~aekeLekKfqqT~ay~NMk~~ltkKn~QiKeLRkrl~ 277 (278)
T PF15294_consen 207 EKALQDKESQQKALEETLQSC----KHELLRVQEQLSLAEKELEKKFQQTAAYRNMKEILTKKNEQIKELRKRLA 277 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHhcchhhhcchhhHHHHhCccHHHHHhHHHHHhccHHHHHHHHHhc
Confidence 1 1233344566666666666 44566677776777889999999888777777665 678888888763
No 204
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=49.69 E-value=3.9e+02 Score=29.42 Aligned_cols=97 Identities=20% Similarity=0.226 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHhhcccchhhhHHHHHHHHh
Q 000822 832 EKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLEST----NEELQRQVVEANNKANNSSSENELLVETNNQL 907 (1267)
Q Consensus 832 e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~----~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~L 907 (1267)
-+|-..++--.-++.||+..++-...+..+-...++.-..+++. ..+++.+++-+. -+-.+...|+.+-..-
T Consensus 64 ~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~~~~~~~~~~klekLe----~LE~E~~rLt~~Q~~a 139 (178)
T PF14073_consen 64 SQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRERQQDQSELQAKLEKLE----KLEKEYLRLTATQSLA 139 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccchhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443333333332222222 223333333332 2234677777777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 908 KSKVAELQELLDSAISEKEATGQQL 932 (1267)
Q Consensus 908 esei~eLqe~Le~a~~ere~aee~l 932 (1267)
+.+|..|++.|-..+-.|+.+.+++
T Consensus 140 e~Ki~~LE~KL~eEehqRKlvQdkA 164 (178)
T PF14073_consen 140 ETKIKELEEKLQEEEHQRKLVQDKA 164 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998554
No 205
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.65 E-value=6.7e+02 Score=32.04 Aligned_cols=54 Identities=20% Similarity=0.382 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 000822 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDV 770 (1267)
Q Consensus 715 ek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~ 770 (1267)
...+..|+.++..+...+..+-..|...|... .......+...|...|+....|
T Consensus 345 ~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~--a~~l~~~v~~~l~~L~m~~~~f 398 (563)
T TIGR00634 345 DESLEALEEEVDKLEEELDKAAVALSLIRRKA--AERLAKRVEQELKALAMEKAEF 398 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCcEE
Confidence 34455566666666666666666666555432 2223333455555555554433
No 206
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=48.46 E-value=4.4e+02 Score=29.61 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhHHHHH
Q 000822 658 LEKKCEEAEAGSKQYSD 674 (1267)
Q Consensus 658 LEKK~k~~eqeLae~~e 674 (1267)
.+.....|+.+-..|.+
T Consensus 154 ~e~q~~~Fe~ER~~W~e 170 (202)
T PF06818_consen 154 REEQRSSFEQERRTWQE 170 (202)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344556666555543
No 207
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=47.81 E-value=4.4e+02 Score=29.45 Aligned_cols=59 Identities=15% Similarity=0.224 Sum_probs=24.1
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch
Q 000822 422 ELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1267)
Q Consensus 422 e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1267)
+|..-|.--++.....+.+....|.++-+..--++.....+......++.+|..+-++.
T Consensus 24 DP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G 82 (219)
T TIGR02977 24 DPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKG 82 (219)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33333333333333333333443444444434444444444444444444444444333
No 208
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=47.29 E-value=8.4e+02 Score=33.06 Aligned_cols=290 Identities=17% Similarity=0.145 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHH
Q 000822 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1267)
Q Consensus 835 KKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eL 914 (1267)
-+|..||.-++..+-..+ -.++.+++..+..+...++..+..+..+..+....+......+......+..+.+-++..
T Consensus 333 ~~lK~ql~~l~~ell~~~--~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~~~~~~~~k~k~~~~~~~~ 410 (913)
T KOG0244|consen 333 LKLKAQLEPLQVELLSKA--GDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLKLTGAEKEKDKLRRRTDSC 410 (913)
T ss_pred HHHHHHHHHHHHHHHhhc--cccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHhcchhhhhHHHHHHHHHHH
Confidence 455556666665554443 122556777778888999999999999999888888777777777777888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHhhhhhhh-hHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhHHHHh
Q 000822 915 QELLDSAISEKEATGQQLASHMNTVTELTEQ-HSRALELHSA-TEARVKEAEIQLHEAIQRFTQRDIEANNLNEKVSVLE 992 (1267)
Q Consensus 915 qe~Le~a~~ere~aee~l~~~~~~~~eL~e~-~~r~~~l~s~-~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl~~~E 992 (1267)
...+....+. .+.++..-....++++... ...+....+. -++.... .+.--+-......+-.+..+++-++..-|
T Consensus 411 ~~~~~~~~~~--~~~~~~~~L~~~~~~v~~~~~e~~~~~~~~~~e~~~~~-~~~~~~~~~~q~~ls~el~el~k~l~~Ke 487 (913)
T KOG0244|consen 411 MNLLSEDSNE--DASDKSASLPKPLEPVDSGTEEIGMNTDTSGDEAAEKE-LSETIGHPQKQGSLSGELSELEKRLAEKE 487 (913)
T ss_pred HHHHHHhHhH--HhhhccccCCccccccccccccccccccCCCchhhhcc-cccCccchHHHhhhhHHHHHHHhhhcccc
Confidence 7777665433 2333312223333333333 1111111111 0000000 00000011111123336666776776555
Q ss_pred hhhhhHHHHHHHHHHHHhhhhHHHHHHHHH-HHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHh
Q 000822 993 GQIKSYEEQAREASTVAETRKFELEETLLK-LKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAK 1071 (1267)
Q Consensus 993 ~~~~~~~~~~~~a~~~a~~~k~e~e~~l~~-~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~q 1071 (1267)
.-++... -. ..-......|.+. ...|+..+.+++..-+.+-.+-... +.+-.+.-.-+..||++|+.+
T Consensus 488 ~l~rr~~--~~------~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~---~~~~~kl~eer~qklk~le~q 556 (913)
T KOG0244|consen 488 PLTRRKA--YE------KAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVF---NRLAAKLGEERVQKLKSLETQ 556 (913)
T ss_pred HHHHHHH--Hh------hhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHH
Confidence 5544300 00 0001111224445 7777777777777655555542222 211223334456778888888
Q ss_pred hhHhhhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000822 1072 LSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEA 1141 (1267)
Q Consensus 1072 l~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~ 1141 (1267)
.+-. ..+.-+...|-+...+.++-.-++.+++..+|.|-=.+.-....--.+||.-|.--+-.-.+|..
T Consensus 557 ~s~l-kk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d~ekfr~~K~~~~Ke~~qlk~ 625 (913)
T KOG0244|consen 557 ISLL-KKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKEDAEKFRQWKDRTEKEWNQLKG 625 (913)
T ss_pred HHHH-HHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc
Confidence 5544 55555667788888888999999998888888887666655555566666665554444444444
No 209
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=47.25 E-value=3.9e+02 Score=32.47 Aligned_cols=112 Identities=13% Similarity=0.194 Sum_probs=69.5
Q ss_pred hHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 322 LTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 322 ~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
.+.+-+-|+..+.+.+.-.......+......|.+...++....-+| ..+=+-.+.+|..+..++.....
T Consensus 211 ~~~d~kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI----------~sREk~iN~qle~l~~eYr~~~~ 280 (359)
T PF10498_consen 211 IRADAKDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKI----------ESREKYINNQLEPLIQEYRSAQD 280 (359)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHH
Confidence 44455667777777777777777777777777777777776666666 11112245566666666666666
Q ss_pred HHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhh
Q 000822 402 EKEALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDS 443 (1267)
Q Consensus 402 ~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~ 443 (1267)
....+......++..+.++...+.++-+.|.....+..-|-+
T Consensus 281 ~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~ 322 (359)
T PF10498_consen 281 ELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGS 322 (359)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666666666666666666666666666555555554444444
No 210
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=47.13 E-value=6.5e+02 Score=31.16 Aligned_cols=16 Identities=13% Similarity=0.372 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhHHHHH
Q 000822 481 LELEDIIRASNEAAEE 496 (1267)
Q Consensus 481 ~EL~~qi~~~~~~~Ek 496 (1267)
..+..++......+..
T Consensus 175 ~~~~~~i~~~~~~~~~ 190 (457)
T TIGR01000 175 AQLDQQISKTDQKLQD 190 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 211
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.71 E-value=2.8e+02 Score=35.71 Aligned_cols=27 Identities=33% Similarity=0.458 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 000822 567 YKDKITQLELILNQSNTRSSELEEELR 593 (1267)
Q Consensus 567 lqkkIs~LEsqLk~LqsRireLEEele 593 (1267)
....|..|+..|..-..++..|+..++
T Consensus 479 ~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 479 RDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 212
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=46.62 E-value=7.8e+02 Score=31.98 Aligned_cols=142 Identities=18% Similarity=0.184 Sum_probs=87.8
Q ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 329 IKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEA 408 (1267)
Q Consensus 329 lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk 408 (1267)
+-..++-+.+++..-...|.+|+.=|+.++..+....--++.+.--++.+..+.-.+-+.+++|.=.+..++..+.-.++
T Consensus 123 L~LQvsvLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~ 202 (861)
T KOG1899|consen 123 LQLQVSVLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEK 202 (861)
T ss_pred heehHHHHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHH
Confidence 33355666666666667788888888888888887777777777777777777777777777777777777666666666
Q ss_pred HHHHhHhhHHHhhhh-hHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccch
Q 000822 409 AMADLTGNIARMKEL-CSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRN 480 (1267)
Q Consensus 409 ~i~DLessieeL~e~-~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~ 480 (1267)
..++-+.-|.+++.. ..++..+--+..-.++- -+.|+.-|+-.+.++..+-......+.++.
T Consensus 203 K~R~se~l~qevn~~kv~e~~~erlqye~klks----------tk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~ 265 (861)
T KOG1899|consen 203 KLRLSENLMQEVNQSKVGEVVQERLQYETKLKS----------TKGEMAPLREQRSEKNDEEMRLLRTLVQRL 265 (861)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc----------ccchhhhHHHHHhhhhhHHHHHHHHHHHHH
Confidence 666666555555422 12222222222222222 233667777666666666666666655554
No 213
>PF04645 DUF603: Protein of unknown function, DUF603; InterPro: IPR006739 This family includes several uncharacterised proteins from Borrelia species.
Probab=46.32 E-value=4.1e+02 Score=29.10 Aligned_cols=54 Identities=31% Similarity=0.405 Sum_probs=37.5
Q ss_pred hhHHHHHHHHHH----hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 000822 490 SNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKE 552 (1267)
Q Consensus 490 ~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~e 552 (1267)
..+.++++|+++ ..|..++..+.+++..|+ +.....+|..|..+|..++.++..
T Consensus 73 ~~~~a~~~Kse~~~~r~~L~l~FI~sf~~Y~~le---------L~s~~~ei~~L~~kI~~L~~~in~ 130 (181)
T PF04645_consen 73 SNAEARNAKSELEMERSNLELSFIDSFNQYKNLE---------LKSIKKEIEILRLKISSLQKEINK 130 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHhhhhh---------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777888999998 688889999999987765 334444555555555555555543
No 214
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=46.06 E-value=2e+02 Score=26.84 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 517 ELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELI 577 (1267)
Q Consensus 517 eLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsq 577 (1267)
.|+..+..|+.+++.+.+.+..+......+..+-......+..+-..+..+...+..|..+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666665555555555544444444444444444444444444
No 215
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.94 E-value=9.3e+02 Score=32.68 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=109.4
Q ss_pred HHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHH
Q 000822 404 EALEAAMADLTGNIARMKELCSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLEL 483 (1267)
Q Consensus 404 eslEk~i~DLessieeL~e~~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL 483 (1267)
..++.+-.+|...+-.|++....=.....++..+.-+.-+ |+..++|.-|-..+. +..+--.++.|
T Consensus 371 kqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~s----------E~~eL~r~kE~Lsr~----~d~aEs~iadl 436 (1243)
T KOG0971|consen 371 KQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNS----------ELEELRRQKERLSRE----LDQAESTIADL 436 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhh----------HHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 4566666677777777766655554455555555544444 777776665554432 22233345677
Q ss_pred HHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 484 EDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREV-REFSEKLSQLSTALKEVEEEKKQLHD 562 (1267)
Q Consensus 484 ~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei-~eLeeqiskLqsEL~elE~ELeele~ 562 (1267)
.+|||.+-++. ..+..|...+-+.+.+.+.|+..+..+..=- +...++ .......-.|+.+|..+..-+.+++.
T Consensus 437 kEQVDAAlGAE----~MV~qLtdknlnlEekVklLeetv~dlEale-e~~EQL~Esn~ele~DLreEld~~~g~~kel~~ 511 (1243)
T KOG0971|consen 437 KEQVDAALGAE----EMVEQLTDKNLNLEEKVKLLEETVGDLEALE-EMNEQLQESNRELELDLREELDMAKGARKELQK 511 (1243)
T ss_pred HHHHHHhhcHH----HHHHHHHhhccCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 77777754443 3447888888999999999999988665422 222222 22233345666677777666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 000822 563 QMNDYKDKITQLELILNQSNTRSSELEEELRITKER 598 (1267)
Q Consensus 563 kleelqkkIs~LEsqLk~LqsRireLEEele~L~Ee 598 (1267)
+++..+..+-.+...|..+...+..|.+.+..+..+
T Consensus 512 r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq 547 (1243)
T KOG0971|consen 512 RVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQ 547 (1243)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777777776666555443
No 216
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=45.42 E-value=6e+02 Score=30.32 Aligned_cols=116 Identities=17% Similarity=0.274 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhH-------HHH---------HHHHHHHHH
Q 000822 677 CELASELEAFQARTSSLEVALQMANDK-ERELTESLNAAADEKRKLQDTSNG-------YNE---------KLAEAENLL 739 (1267)
Q Consensus 677 ~~Lk~ELE~lekE~relEt~Lee~rek-~reL~eqleevek~k~~LE~EieE-------lke---------qLeElE~~L 739 (1267)
..+...++.+..+.-.++..|..-+.. +..|..+.+.+...++.|+..+.. ... -..-..+-+
T Consensus 152 ~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI 231 (310)
T PF09755_consen 152 SAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHI 231 (310)
T ss_pred HHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHH
Confidence 334455555556555666655444443 556777777777777777666641 110 112344445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 000822 740 ELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRN 795 (1267)
Q Consensus 740 e~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~ 795 (1267)
..||.+|.-+...+...+.+-.++ -..+...-+....--..+++.|..+..++
T Consensus 232 ~~Lr~EV~RLR~qL~~sq~e~~~k---~~~~~~eek~ireEN~rLqr~L~~E~err 284 (310)
T PF09755_consen 232 RSLRQEVSRLRQQLAASQQEHSEK---MAQYLQEEKEIREENRRLQRKLQREVERR 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777776666665555544444 33333333433333344445554444433
No 217
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.29 E-value=7.7e+02 Score=31.55 Aligned_cols=126 Identities=19% Similarity=0.144 Sum_probs=98.0
Q ss_pred hccchHHHHHHHHHhhHHHHHHHHHHhhHh-hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 476 ASQRNLELEDIIRASNEAAEEAKSQLRELE-PRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVE 554 (1267)
Q Consensus 476 ~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~-~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE 554 (1267)
+.|+..||+...|..+.-++..+..+-... .-+.........=+.-+++.-.|-..+-+.|.++...+-+++.++..+.
T Consensus 48 Lkqq~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE~~yl~kI~eleneLKq~r~el~~~q 127 (772)
T KOG0999|consen 48 LKQQLEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKEEYYLQKILELENELKQLRQELTNVQ 127 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455568899999999999999988884433 3355666666667777888888888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 555 EEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 555 ~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
.++..+.....++...-..++.+.-.+...++...-.-..+.....+
T Consensus 128 ~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSE 174 (772)
T KOG0999|consen 128 EENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSE 174 (772)
T ss_pred HHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888877777777777777777666666655555555
No 218
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=44.77 E-value=6.2e+02 Score=30.29 Aligned_cols=113 Identities=20% Similarity=0.261 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYN 729 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElk 729 (1267)
.+.++.+-.-.+...|...++.-..-+..++.+++..++.|..++..--.-+.+..+-+..+-++...+.-....+.-++
T Consensus 219 qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ekt~~~k~~~~lq 298 (391)
T KOG1850|consen 219 QLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEKTVRDKEYETLQ 298 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 44455555566777888888888888888888888888888877774444455555555666666666666677777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 730 EKLAEAENLLELLRNDLNMTQERLESIEKDLKA 762 (1267)
Q Consensus 730 eqLeElE~~Le~LR~El~l~q~k~esiE~~l~~ 762 (1267)
.+|..++....+|+.+-+.+--++.-+++.+.+
T Consensus 299 ~kiq~LekLcRALq~ernel~~~~~~~e~~v~~ 331 (391)
T KOG1850|consen 299 KKIQRLEKLCRALQTERNELNKKLEDLEAQVSA 331 (391)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhcccch
Confidence 788888888888877777666666655554444
No 219
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=44.28 E-value=9e+02 Score=32.00 Aligned_cols=100 Identities=20% Similarity=0.241 Sum_probs=47.5
Q ss_pred HHHhccchHHHHHHHHH-----hhHHHHHHHHHH--hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q 000822 473 AATASQRNLELEDIIRA-----SNEAAEEAKSQL--RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQ 545 (1267)
Q Consensus 473 ~~~~~qk~~EL~~qi~~-----~~~~~Ek~k~~l--~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqisk 545 (1267)
++...-+..++..++.. .++.....+.++ ......+.+.+-++..++.-+ -.+.++-.....-..+
T Consensus 23 ~a~~ttr~~e~e~~~~~ar~~~~~a~e~~~~lq~~~~e~~aqk~d~E~ritt~e~rf-------lnaqre~t~~~d~ndk 95 (916)
T KOG0249|consen 23 LAPLTTRVPELEHSLPEARKDLIKAEEMNTKLQRDIREAMAQKEDMEERITTLEKRF-------LNAQRESTSIHDLNDK 95 (916)
T ss_pred cCCCcCCcHHHHhhhhhhHHHHHHHHHHHHHHhhhhhhHHhhhcccccccchHHHHH-------HhccCCCCCcccchHH
Confidence 33344444666666655 333333333333 333333444444444444443 3333444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1267)
Q Consensus 546 LqsEL~elE~ELeele~kleelqkkIs~LEsqLk 579 (1267)
+...|.+.+..+.....++..++..+..++..+.
T Consensus 96 lE~~Lankda~lrq~eekn~slqerLelaE~~l~ 129 (916)
T KOG0249|consen 96 LENELANKDADLRQNEEKNRSLQERLELAEPKLQ 129 (916)
T ss_pred HHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhH
Confidence 5555555555555555555555555555555544
No 220
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=43.91 E-value=6.8e+02 Score=30.51 Aligned_cols=34 Identities=9% Similarity=0.200 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 509 IAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1267)
Q Consensus 509 ~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeq 542 (1267)
........-++.|+..+..++..++..+..|..+
T Consensus 167 ~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~ 200 (444)
T TIGR03017 167 EPAQKAALWFVQQIAALREDLARAQSKLSAYQQE 200 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555443
No 221
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=43.75 E-value=2.6e+02 Score=31.70 Aligned_cols=64 Identities=23% Similarity=0.324 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 538 EFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 538 eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
++.+++..+..+...+-.++..+++.++..+..+..++.....+....+-+..+...|..+..+
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~E 202 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDE 202 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 3333333333333333334444444444444444444444444444444444444444444444
No 222
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=43.65 E-value=7.6e+02 Score=31.00 Aligned_cols=126 Identities=15% Similarity=0.239 Sum_probs=79.8
Q ss_pred HHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHh
Q 000822 813 LQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTS---LESTNEELQRQVVEANNK 889 (1267)
Q Consensus 813 Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~---le~~~kelq~e~dE~~~~ 889 (1267)
.....++++.++ |..+||+-|+||...=+.-+..+-+.+..+.-+.+-+.+++-+... +-.-+..|...+.++-
T Consensus 299 ~eqs~Eslqple-edmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~kQqvfvDiinkLk~niEeLI-- 375 (527)
T PF15066_consen 299 TEQSFESLQPLE-EDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKITKQQVFVDIINKLKENIEELI-- 375 (527)
T ss_pred HHhhhhccCCcH-HHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--
Confidence 344788999886 7789999999999888888888888887777777777666654332 2233444444444443
Q ss_pred hcccchhhhHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHH
Q 000822 890 ANNSSSENELLVETNNQLKSKV-------AELQELLDSAISEKEATGQQLASHMNTVTELTEQH 946 (1267)
Q Consensus 890 ~~~~~~e~~~l~~~~~~Lesei-------~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~ 946 (1267)
-.++.+.=+++-++.-+ ...+-.|.+...+++...=.++|.+..--.|.+.+
T Consensus 376 -----edKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelkK~k~nyv~LQEry 434 (527)
T PF15066_consen 376 -----EDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELKKIKANYVHLQERY 434 (527)
T ss_pred -----HhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444443444444444 44444555555666666666666666655555554
No 223
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=42.80 E-value=2.7e+02 Score=25.54 Aligned_cols=57 Identities=16% Similarity=0.342 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHh
Q 000822 364 IKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARM 420 (1267)
Q Consensus 364 l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessieeL 420 (1267)
|.+-++.|+..+..+...+.........+...|.........+...|..|...+.++
T Consensus 2 lQsaL~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 2 LQSALEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555677777777766666666677777777666666666666666555444
No 224
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.18 E-value=5.7e+02 Score=29.89 Aligned_cols=98 Identities=22% Similarity=0.352 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 000822 1089 SKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKF 1168 (1267)
Q Consensus 1089 ~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~~~~ 1168 (1267)
.++.++..+..+...+.+.+.++..+..+-..+.++..+-+.||+-.. .
T Consensus 163 iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~q-----------K-------------------- 211 (267)
T PF10234_consen 163 IEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQ-----------K-------------------- 211 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--------------------
Confidence 566888888899999999999999988888888888888888887666 1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 000822 1169 ALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQR 1232 (1267)
Q Consensus 1169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1232 (1267)
||.- |..+.=-||+|-+.. +++|....+.|..+++-.+-|+.|+....+
T Consensus 212 ----RL~s----Lq~vRPAfmdEyEkl-------E~EL~~lY~~Y~~kfRNl~yLe~qle~~~~ 260 (267)
T PF10234_consen 212 ----RLQS----LQSVRPAFMDEYEKL-------EEELQKLYEIYVEKFRNLDYLEHQLEEYNR 260 (267)
T ss_pred ----HHHH----HHhcChHHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2211 223556677777664 678888888899999999999888876554
No 225
>PRK10698 phage shock protein PspA; Provisional
Probab=42.04 E-value=5.6e+02 Score=28.95 Aligned_cols=122 Identities=11% Similarity=0.159 Sum_probs=86.2
Q ss_pred hhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000822 313 SSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNV 392 (1267)
Q Consensus 313 ~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL 392 (1267)
.--+.+.-+|..++..++..+..+.-+..++++.+..+...+..+...-.....+-.|.+....-..+ ......+..+
T Consensus 27 k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K--~~~~~~~~~l 104 (222)
T PRK10698 27 KLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEK--QKLTDLIATL 104 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHHHH
Confidence 34445666778888888888888888999999999999999999998888887777666554433322 3334666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhhh
Q 000822 393 NEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSDE 436 (1267)
Q Consensus 393 ~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~~ 436 (1267)
...+.........+...+..|...|.+.......|--.......
T Consensus 105 ~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a 148 (222)
T PRK10698 105 EHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASS 148 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777776666666555554444444
No 226
>PLN02939 transferase, transferring glycosyl groups
Probab=41.71 E-value=1.1e+03 Score=32.39 Aligned_cols=185 Identities=19% Similarity=0.255 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHh
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEV-ALQMANDKERELTESLNAAADEKR---KLQDTS 725 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt-~Lee~rek~reL~eqleevek~k~---~LE~Ei 725 (1267)
++++.+..++|...-++.-+.++...+ -..+..+..+.. .+.-.-+++.+|+.-++....+.. -.-.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (977)
T PLN02939 254 ETEERVFKLEKERSLLDASLRELESKF-------IVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVLDQN 326 (977)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-------HhhhhhhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 555666666666655554444443333 233333333333 222233333333333333321111 112333
Q ss_pred hHHHHHHHHHHHHHH-----HHHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHh--hhhhh
Q 000822 726 NGYNEKLAEAENLLE-----LLRND-LNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQAT--SRNSE 797 (1267)
Q Consensus 726 eElkeqLeElE~~Le-----~LR~E-l~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~--~~~~e 797 (1267)
.+++.++..++..|. .++.+ +.++|.++..++..+++. +.++..-..-.+..+...+.+|.... +++.-
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (977)
T PLN02939 327 QDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEERLQAS---DHEIHSYIQLYQESIKEFQDTLSKLKEESKKRS 403 (977)
T ss_pred hHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 455555555554443 33333 467788888888899998 88888888888888888888887642 22222
Q ss_pred hhHhHHHhhHhhHHHHHHHHHhhh----cchhHhhhHHHHHHHHHHHHHHH
Q 000822 798 LESLHESLMRESEMKLQDALANIT----SRDSEAKSFSEKLKNLEGQVKMY 844 (1267)
Q Consensus 798 ~~~~~e~~~kk~E~~Lqeale~~~----~~~sEa~~l~e~LKKLE~qikel 844 (1267)
+.--...+--++=+.|-=-||++. =--.+|..|-+.+-+-.+.|-++
T Consensus 404 ~~~~~~~~~~~~~~~lll~id~~~~~~~~~~~~a~~lr~~~~~~~~~~~~~ 454 (977)
T PLN02939 404 LEHPADDMPSEFWSRILLLIDGWLLEKKISNNDAKLLREMVWKRDGRIREA 454 (977)
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHhhhhhHHHH
Confidence 221111112222222333666664 12345665656665555555544
No 227
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=41.19 E-value=5.8e+02 Score=28.95 Aligned_cols=138 Identities=22% Similarity=0.312 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhh-cchhHhhhHHHHH----HHHHHHHHHHHH
Q 000822 772 EKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANIT-SRDSEAKSFSEKL----KNLEGQVKMYEE 846 (1267)
Q Consensus 772 ~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~-~~~sEa~~l~e~L----KKLE~qikele~ 846 (1267)
.|+......+......++.+...|-...+--=.. +.++|.++. .+.+|.+-+.+.. +.++.+|+.|+.
T Consensus 5 ~KL~~i~e~~~~f~~~le~e~~~Rr~~ee~r~~~-------i~e~i~~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~ 77 (247)
T PF06705_consen 5 SKLASINERFSGFESDLENEKRQRREQEEQRFQD-------IKEQIQKLEKALEAEVKRRVESNKKLQSKFEEQINNMQE 77 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777788888766654444222222 333555555 5555555554444 445555666654
Q ss_pred HHHHH-HhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 000822 847 QLAEA-AGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAELQELLDSAISEK 925 (1267)
Q Consensus 847 ql~ea-~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eLqe~Le~a~~er 925 (1267)
.+..- ..+...+..-+ ..+...+..+...+.+....+... +-..+..|..+|..|.+.++..-..|
T Consensus 78 ~v~~~~~~~~~~~~~~l-------~~L~~ri~~L~~~i~ee~~~r~~~------ie~~~~~l~~~l~~l~~~~~~Er~~R 144 (247)
T PF06705_consen 78 RVENQISEKQEQLQSRL-------DSLNDRIEALEEEIQEEKEERPQD------IEELNQELVRELNELQEAFENERNER 144 (247)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44332 23444444444 444444444444444444333111 12456678889999999999998888
Q ss_pred HHHH
Q 000822 926 EATG 929 (1267)
Q Consensus 926 e~ae 929 (1267)
..-+
T Consensus 145 ~erE 148 (247)
T PF06705_consen 145 EERE 148 (247)
T ss_pred HHHH
Confidence 7777
No 228
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=40.92 E-value=5.3e+02 Score=28.39 Aligned_cols=103 Identities=13% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000822 336 AKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVN-ARESVE-AVLKTQEAQVSNVNEELDKVSKEKEALEAAMADL 413 (1267)
Q Consensus 336 lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~-~~~~~~-ekL~e~eaef~eL~eELe~lr~~keslEk~i~DL 413 (1267)
.++.--+-...+..|++++..|...|.++..++..... ...... ..-.+....+..+...|+.....-..+.....-|
T Consensus 7 ~qe~Qq~qa~Lv~~LQ~KV~qYr~rc~ele~~l~~~~~l~~~~~~~~~~~e~s~dLe~~l~rLeEEqqR~~~L~qvN~lL 86 (182)
T PF15035_consen 7 YQEEQQRQAQLVQRLQAKVLQYRKRCAELEQQLSASQVLESPSQRRRSEEEHSPDLEEALIRLEEEQQRSEELAQVNALL 86 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcCcccccccccccCcccHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444578889999999999999999998821100 000000 0001112333344444444444444444444444
Q ss_pred HhhHHHhhhhhHHHHHHHhhhhhhh
Q 000822 414 TGNIARMKELCSELEEKLRNSDENF 438 (1267)
Q Consensus 414 essieeL~e~~eeLEeeL~~~~~e~ 438 (1267)
...+.......+.|-+.+.++...+
T Consensus 87 ReQLEq~~~~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 87 REQLEQARKANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444433
No 229
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=40.28 E-value=8.7e+02 Score=30.73 Aligned_cols=140 Identities=24% Similarity=0.248 Sum_probs=93.2
Q ss_pred hcccchhhhhhhhhccccccccCcccccccCCCcccccccCCcchHHHHHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Q 000822 45 ALDAEFIKVEKEALDVKEVSHMAEPAAAEEDDKPSVVDRSSSSSSRELLEANEKVKELEIELERAATALKNAEIENARLQ 124 (1267)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~ 124 (1267)
+.=|+-||==-=.|++--....|+|-+++| ...+-|+++||.+-..----+++.+.-....-
T Consensus 57 esyGesvKqAVilNVlG~~d~~pDPLsPgE------------------~~l~~Kl~eLE~e~k~d~v~~khn~~I~~k~g 118 (508)
T PF00901_consen 57 ESYGESVKQAVILNVLGTGDEPPDPLSPGE------------------QGLQRKLKELEDEQKEDEVREKHNKKIIEKFG 118 (508)
T ss_pred cchHHHHHHHHHHHhccCCCCCCCCCCHhH------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344666665445566666666777777777 56789999999998888888888887777777
Q ss_pred HHHHHHHHHHHH-------hhhhhhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhHHH-----HHHHHHHHHHHhhh
Q 000822 125 DDVLITKEKLEE-------SGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEA-----KRKELAEVKEAFDG 192 (1267)
Q Consensus 125 ~el~~~ke~l~~-------~e~~~~ele~~~~~l~~~~~e~~~~~~~e~~~L~~~lq~~ee-----~~~~L~~~ke~lee 192 (1267)
.+|.++..-... -+..++-|+.....+.. |+..|+ ..+..|..+|+-+.. -++-...++..++.
T Consensus 119 ~~L~~v~~~~~~~~~~~~~e~~q~~~LekAl~~~~~-i~~~E~---~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~a 194 (508)
T PF00901_consen 119 NDLEKVYKFMKGQEKVEEEEENQIEILEKALKSYGK-IVKEEN---KQLDRLARALQKESRERTQDERKMVEEYRQKIDA 194 (508)
T ss_pred HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 777776543332 23344445544444443 444444 467889999999943 34444556677777
Q ss_pred hhHHHHHHHHHHHH
Q 000822 193 LSLEIEQSRSRLQE 206 (1267)
Q Consensus 193 ~~~~l~~~kkk~qe 206 (1267)
+...++.++-=|++
T Consensus 195 L~~aIe~Er~~m~E 208 (508)
T PF00901_consen 195 LKNAIEVEREGMQE 208 (508)
T ss_pred HHHHHHHHHhhHHH
Confidence 77777777777765
No 230
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=39.30 E-value=1.8e+02 Score=31.01 Aligned_cols=16 Identities=19% Similarity=0.355 Sum_probs=6.6
Q ss_pred HHHHHHhhhhhhhhhh
Q 000822 426 ELEEKLRNSDENFCKT 441 (1267)
Q Consensus 426 eLEeeL~~~~~e~~K~ 441 (1267)
.+..........+.+|
T Consensus 149 ~~~~~~~~~~k~w~kR 164 (169)
T PF07106_consen 149 KLEKEYKKWRKEWKKR 164 (169)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 231
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.09 E-value=9.5e+02 Score=30.80 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhh
Q 000822 536 VREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQ 611 (1267)
Q Consensus 536 i~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rq 611 (1267)
|..+......|+..+..+...+.+....+..|+.-.++|-+..-...+++..++--+.+-.++|...++.++-.+.
T Consensus 333 Ie~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~ 408 (654)
T KOG4809|consen 333 IESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555566666677777888888888888888888888888777777777765555544443
No 232
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=38.24 E-value=4.2e+02 Score=26.44 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000822 707 LTESLNAAADEKRKLQDTSNGYNEKLAEAENL 738 (1267)
Q Consensus 707 L~eqleevek~k~~LE~EieElkeqLeElE~~ 738 (1267)
+...++.+...+..|+.....+..++.+++..
T Consensus 72 l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~ 103 (110)
T TIGR02338 72 LKEKKETLELRVKTLQRQEERLREQLKELQEK 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444444333333
No 233
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=37.33 E-value=4.1e+02 Score=26.08 Aligned_cols=89 Identities=24% Similarity=0.379 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhhHHH
Q 000822 753 LESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSE 832 (1267)
Q Consensus 753 ~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~l~e 832 (1267)
.+.+...+..+| ........+-.+-.+.+.+..+++..+..+..+.......++.- +.+..+..+++.+.+
T Consensus 11 ~e~v~~~l~~R~-~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~--------~~~~~l~~e~~~lk~ 81 (108)
T PF02403_consen 11 PEEVRENLKKRG-GDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG--------EDAEELKAEVKELKE 81 (108)
T ss_dssp HHHHHHHHHHTT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT--------CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc--------ccHHHHHHHHHHHHH
Confidence 344555666665 34445566666677777788888888887777773333222221 334455556666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000822 833 KLKNLEGQVKMYEEQLAE 850 (1267)
Q Consensus 833 ~LKKLE~qikele~ql~e 850 (1267)
+++.++.+++.++.++..
T Consensus 82 ~i~~le~~~~~~e~~l~~ 99 (108)
T PF02403_consen 82 EIKELEEQLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655544
No 234
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=36.86 E-value=1.5e+02 Score=27.36 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000822 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELE 589 (1267)
Q Consensus 541 eqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLE 589 (1267)
.++..|...+.-.+..+..++.-+..-+..|..|+..+..+..+++.+.
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444444444444444444444444445555554444444443
No 235
>PRK04406 hypothetical protein; Provisional
Probab=36.38 E-value=2.3e+02 Score=26.84 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 000822 542 KLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTR 584 (1267)
Q Consensus 542 qiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsR 584 (1267)
++..|...+.-.+.-+..++.-+..-+..|..|..++..+..+
T Consensus 12 Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 12 RINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333
No 236
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=35.07 E-value=4.9e+02 Score=33.63 Aligned_cols=74 Identities=23% Similarity=0.369 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 334 SQAKEEISALDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMA 411 (1267)
Q Consensus 334 ~~lKedkdrle~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~ 411 (1267)
+.++.....|+..+.+++..|..+..+|..+..++ ...-.....+......+..|.-+|.+.......++..+.
T Consensus 432 e~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~----~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 432 ERLEEENSELKRELEELKREIEKLESELERFRREV----RDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444 222222333333444444444444444444333333333
No 237
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=34.77 E-value=3.4e+02 Score=28.29 Aligned_cols=79 Identities=8% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhHHHHHhccch----hhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHH
Q 000822 280 VEEELKRSNTEISAIQEELGLSK----LQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISALDNLLADAKENLH 355 (1267)
Q Consensus 280 ~ee~~~~~~~~l~~~ee~~~l~K----s~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrle~~l~eL~~~l~ 355 (1267)
|..+....+.+|..+.+.+.-+| +.|+-|..++..-..+.+.+..++..++.++.++..|++........|...|.
T Consensus 41 m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 41 MSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 000822 356 AKV 358 (1267)
Q Consensus 356 ~ke 358 (1267)
..+
T Consensus 121 ~ie 123 (126)
T PF07889_consen 121 EIE 123 (126)
T ss_pred HHh
No 238
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=34.52 E-value=2.5e+02 Score=30.08 Aligned_cols=47 Identities=19% Similarity=0.334 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 000822 1153 FKSEIESLKAQAAEKFALETRIKELEELLVNVETQFKEEVENVKVSA 1199 (1267)
Q Consensus 1153 ~~~e~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1199 (1267)
+..+|..|+.....-..|++.|..|......+...|..++..++-..
T Consensus 39 ~d~~i~~Lk~~~~d~eeLk~~i~~lq~~~~~~~~~~e~~l~~~~~~~ 85 (155)
T PF06810_consen 39 ADKQIKDLKKSAKDNEELKKQIEELQAKNKTAKEEYEAKLAQMKKDS 85 (155)
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778887788888999999999999988888888887766543
No 239
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=34.29 E-value=3.6e+02 Score=25.42 Aligned_cols=15 Identities=7% Similarity=-0.015 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHhhhh
Q 000822 517 ELEQQLNLVELKSSD 531 (1267)
Q Consensus 517 eLE~QL~eLq~K~~e 531 (1267)
..+...+.++..+..
T Consensus 25 ~Wq~sy~~Lq~~~~~ 39 (70)
T PF04899_consen 25 EWQSSYADLQHMFEQ 39 (70)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 240
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=34.19 E-value=8.8e+02 Score=29.00 Aligned_cols=95 Identities=22% Similarity=0.332 Sum_probs=50.5
Q ss_pred HHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHHHHhhhHhhhhhhHhHHHHH------HhHHHHHHHHHHHHHHH
Q 000822 1031 EELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLH------ASKKAIEDLTQKLTSEV 1104 (1267)
Q Consensus 1031 ~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel~~ql~~~~~e~~~~~K~~~------~~~~~~kEl~~q~~~~~ 1104 (1267)
-+|++. +|+|...+. | ++-|.+.+++..=+-|+..|+..+...- +...+- .+-.++--.+..+..+|
T Consensus 166 VdlEn~---LE~EQE~lv--N-~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~-s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV 238 (310)
T PF09755_consen 166 VDLENT---LEQEQEALV--N-RLWKQMDKLEAEKRRLQEKLEQPVSAPP-SPRDTVNVSEENDTAERLSSHIRSLRQEV 238 (310)
T ss_pred HhHHHH---HHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHccccCCCC-CcchHHhhcccCCchhHHHHHHHHHHHHH
Confidence 345665 555544333 5 7778888888888888888876433211 111000 01112222334445566
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 1105 QGLQTQISAIMEENNSLNETYQNAKNEL 1132 (1267)
Q Consensus 1105 k~lk~q~ee~eee~~~~~~~~r~~q~eL 1132 (1267)
..|+.|+-.+.-+...-.+.|..--+.+
T Consensus 239 ~RLR~qL~~sq~e~~~k~~~~~~eek~i 266 (310)
T PF09755_consen 239 SRLRQQLAASQQEHSEKMAQYLQEEKEI 266 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777666555555555554433333
No 241
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=33.89 E-value=1e+03 Score=29.64 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000822 705 RELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAA 763 (1267)
Q Consensus 705 reL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~ 763 (1267)
.+++.+++.+...+-...+....- ..+..-..++..+..+++...+....-+.+++.
T Consensus 336 e~~~kqL~~~~kek~~~~Qd~~~r--~~E~v~~~md~~~~~~n~V~~kr~a~~~kie~~ 392 (446)
T KOG4438|consen 336 ENLTKQLNELKKEKESRRQDLENR--KTESVKAMMDDNIEKYNVVRQKRNAKVKKIEEK 392 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHhcccchhhccHHHHHHHH
Confidence 466666666655555444444332 335555666666666666666666555555554
No 242
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=33.85 E-value=1.1e+03 Score=29.92 Aligned_cols=79 Identities=24% Similarity=0.278 Sum_probs=43.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 000822 720 KLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELE 799 (1267)
Q Consensus 720 ~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~ 799 (1267)
.+......+..++.+.+..++.+++.+.... ... .-.+++..+..+-..|-.-+..||...+-|+-+.
T Consensus 352 e~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~-~~s-----------~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~ 419 (511)
T PF09787_consen 352 ELSRQKSPLQLKLKEKESEIQKLRNQLSARA-SSS-----------SWNELESRLTQLTESLIQKQTQLESLGSEKNALR 419 (511)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHh-ccC-----------CcHhHHHHHhhccHHHHHHHHHHHHHHhhhhhcc
Confidence 3444455666677777788888888765543 111 0123333444444444455667777666666555
Q ss_pred HhHHHhhHhhHHHHH
Q 000822 800 SLHESLMRESEMKLQ 814 (1267)
Q Consensus 800 ~~~e~~~kk~E~~Lq 814 (1267)
=.-.+++.++.
T Consensus 420 ----lqlErl~~~l~ 430 (511)
T PF09787_consen 420 ----LQLERLETQLK 430 (511)
T ss_pred ----ccHHHHHHHHH
Confidence 33335555555
No 243
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=33.37 E-value=1.1e+03 Score=29.86 Aligned_cols=56 Identities=9% Similarity=0.103 Sum_probs=34.6
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhchHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHh
Q 000822 425 SELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRAS 490 (1267)
Q Consensus 425 eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~ 490 (1267)
..+...+......+....+ ++..+...++.....++.+.+.+.+-...|..++.++
T Consensus 63 ~~~~~~l~~~~~~~~~~~~----------~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L 118 (475)
T PRK10361 63 ELLNNEVRSLQSINTSLEA----------DLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL 118 (475)
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555444444 5555666667777777777776666667777777773
No 244
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.12 E-value=6.7e+02 Score=30.92 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHhhHHHHHHHHHH----hhHhhhHHHHHHHHHHHHHHHHHHH
Q 000822 484 EDIIRASNEAAEEAKSQL----RELEPRFIAAEQRSVELEQQLNLVE 526 (1267)
Q Consensus 484 ~~qi~~~~~~~Ek~k~~l----~~l~~~~~~~Ekk~keLE~QL~eLq 526 (1267)
.+....+...+++.|.++ .-+...+.+.++++..||.|++++.
T Consensus 225 k~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~ 271 (395)
T PF10267_consen 225 KESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLT 271 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333445555555433 5556667777777777777777653
No 245
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.09 E-value=3.9e+02 Score=24.55 Aligned_cols=41 Identities=24% Similarity=0.372 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 561 HDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 561 e~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
+..+...+..--.+++.|+....+.+.|..++..+..++++
T Consensus 17 ~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 17 QEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666667777777777777777777777777766
No 246
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=32.78 E-value=2.3e+02 Score=35.41 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=59.4
Q ss_pred HHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhHHHhhH---hhHHHHHHHHHhhh-cchhHhhhHHHHH
Q 000822 759 DLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMR---ESEMKLQDALANIT-SRDSEAKSFSEKL 834 (1267)
Q Consensus 759 ~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~k---k~E~~Lqeale~~~-~~~sEa~~l~e~L 834 (1267)
++.+.|+.-.-..++++-+.-+++.+...+....+....+..=++++++ .+..+++.++++.. ....+...+...+
T Consensus 46 e~kalGiegDTP~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~ 125 (472)
T TIGR03752 46 ELKALGIEGDTPADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSER 125 (472)
T ss_pred hhHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4567777777778888888888888888887777666666655555543 34455666666655 5555555555555
Q ss_pred HHHHHHHHHHHHHHH
Q 000822 835 KNLEGQVKMYEEQLA 849 (1267)
Q Consensus 835 KKLE~qikele~ql~ 849 (1267)
..+++.|.+|+.+|+
T Consensus 126 ~~~~~~l~~l~~~l~ 140 (472)
T TIGR03752 126 QQLQGLIDQLQRRLA 140 (472)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566666666666554
No 247
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=32.52 E-value=1.1e+03 Score=29.75 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHH
Q 000822 565 NDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDR 605 (1267)
Q Consensus 565 eelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~r 605 (1267)
.++...+..|...+-.-++.+..+..+.+.+.-+++.....
T Consensus 388 ~elE~rl~~lt~~Li~KQ~~lE~l~~ek~al~lqlErl~~~ 428 (511)
T PF09787_consen 388 NELESRLTQLTESLIQKQTQLESLGSEKNALRLQLERLETQ 428 (511)
T ss_pred HhHHHHHhhccHHHHHHHHHHHHHHhhhhhccccHHHHHHH
Confidence 35555555555555555566666666666666666654433
No 248
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.78 E-value=1.1e+03 Score=29.51 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=55.1
Q ss_pred HHHHhhhhHhhhhhHhHHHHHHhhhhhhhHHHHHhccchhhHHHHHHHhhhHHHhhhhhHHHHHHHHHhhHhHHHHHHHH
Q 000822 264 QEELKGLNEKISEKEKVEEELKRSNTEISAIQEELGLSKLQLLDLEQRFSSKEALITNLTQELDLIKASESQAKEEISAL 343 (1267)
Q Consensus 264 ~ee~~~~~d~~~~~~k~ee~~~~~~~~l~~~ee~~~l~Ks~l~dLE~rl~~ee~lrKe~~~ELk~lK~s~~~lKedkdrl 343 (1267)
.+++..+.|++..+.-+.+..++..-.+.+.+.+-.-.+.+.++||.-+.-.+. +-+.+++.
T Consensus 230 ~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~~selE~llklker------------------l~e~l~dg 291 (521)
T KOG1937|consen 230 EEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQNSELEKLLKLKER------------------LIEALDDG 291 (521)
T ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhHHH------------------HHHhcCCh
Confidence 445666666666665566666666666666666654455666666633333222 44556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 344 DNLLADAKENLHAKVSELEDIKLKLQE 370 (1267)
Q Consensus 344 e~~l~eL~~~l~~ke~El~~l~~klee 370 (1267)
...++.|...+..+...+-++..+.++
T Consensus 292 eayLaKL~~~l~~~~~~~~~ltqqwed 318 (521)
T KOG1937|consen 292 EAYLAKLMGKLAELNKQMEELTQQWED 318 (521)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777888777777777777776633
No 249
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=31.72 E-value=1.3e+03 Score=30.17 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 000822 650 ELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEA 685 (1267)
Q Consensus 650 ELEeqis~LEKK~k~~eqeLae~~e~l~~Lk~ELE~ 685 (1267)
++.+...+.+.+.+.....++.++..++....++..
T Consensus 221 e~~~erlqye~klkstk~e~a~L~Eq~~eK~~e~~r 256 (861)
T KOG1899|consen 221 EVVQERLQYETKLKSTKGEMAPLREQRSEKNDEEMR 256 (861)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHhhhhhHHHH
Confidence 444555556666666666666665555555554443
No 250
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.56 E-value=4.5e+02 Score=24.82 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 000822 541 EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERS 599 (1267)
Q Consensus 541 eqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeL 599 (1267)
.++...-..|.=+.-++.++..+.+.++...+.+.-....+..+...+..+...+.+.+
T Consensus 11 ~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerl 69 (79)
T COG3074 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERL 69 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333444444444444444444444444444444444444444444443
No 251
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=31.40 E-value=6.9e+02 Score=26.89 Aligned_cols=92 Identities=22% Similarity=0.325 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 000822 714 AADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATS 793 (1267)
Q Consensus 714 vek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~ 793 (1267)
+...+.+.+.+-..+....++++...+=.|-++.+...+|+.+-++|..+|-.=..-+--.+...++.++...+-.+...
T Consensus 54 Vq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv~ 133 (159)
T PF04949_consen 54 VQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLVT 133 (159)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666666677777777788999999999999999999888543333333345555556666666666666
Q ss_pred hhhhhhHhHHHh
Q 000822 794 RNSELESLHESL 805 (1267)
Q Consensus 794 ~~~e~~~~~e~~ 805 (1267)
+-.+|++=.+++
T Consensus 134 ~L~eLv~eSE~~ 145 (159)
T PF04949_consen 134 RLMELVSESERL 145 (159)
T ss_pred HHHHHHHHHHHH
Confidence 666666444444
No 252
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=30.58 E-value=6.4e+02 Score=26.30 Aligned_cols=19 Identities=21% Similarity=0.386 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhhHHHHH
Q 000822 518 LEQQLNLVELKSSDSEREV 536 (1267)
Q Consensus 518 LE~QL~eLq~K~~e~erei 536 (1267)
+...+..++.++..+++.+
T Consensus 71 l~~~~~rL~~~~~~~ere~ 89 (151)
T PF11559_consen 71 LQNDVERLKEQLEELEREL 89 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 253
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=30.06 E-value=5.1e+02 Score=26.86 Aligned_cols=78 Identities=26% Similarity=0.334 Sum_probs=41.6
Q ss_pred HhhHhhHHHHHH---HHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 000822 804 SLMRESEMKLQD---ALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQ 880 (1267)
Q Consensus 804 ~~~kk~E~~Lqe---ale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq 880 (1267)
..+..+|++|++ +++.+..+++++. ..+.+=-+=-.+ +...-+++...+...+.. .++.++++.+.++
T Consensus 27 ~qk~~le~qL~E~~~al~Ele~l~eD~~-vYk~VG~llvk~-~k~~~~~eL~er~E~Le~-------ri~tLekQe~~l~ 97 (119)
T COG1382 27 LQKQQLEAQLKEIEKALEELEKLDEDAP-VYKKVGNLLVKV-SKEEAVDELEERKETLEL-------RIKTLEKQEEKLQ 97 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccH-HHHHhhhHHhhh-hHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 667788888887 7777777777764 122220000000 111222222233333333 3377777777777
Q ss_pred HHHHHHHHhh
Q 000822 881 RQVVEANNKA 890 (1267)
Q Consensus 881 ~e~dE~~~~~ 890 (1267)
.+++++...+
T Consensus 98 e~l~eLq~~i 107 (119)
T COG1382 98 ERLEELQSEI 107 (119)
T ss_pred HHHHHHHHHH
Confidence 7777776655
No 254
>PRK02119 hypothetical protein; Provisional
Probab=28.68 E-value=3.3e+02 Score=25.61 Aligned_cols=14 Identities=14% Similarity=0.252 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHH
Q 000822 566 DYKDKITQLELILN 579 (1267)
Q Consensus 566 elqkkIs~LEsqLk 579 (1267)
.-+..|..|..++.
T Consensus 34 ~Qq~~id~L~~ql~ 47 (73)
T PRK02119 34 EQQFVIDKMQVQLR 47 (73)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 255
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=28.49 E-value=9.2e+02 Score=27.41 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=4.2
Q ss_pred HHHHHHHHHHHH
Q 000822 566 DYKDKITQLELI 577 (1267)
Q Consensus 566 elqkkIs~LEsq 577 (1267)
.....+..|+.+
T Consensus 81 ~q~~el~~L~~q 92 (251)
T PF11932_consen 81 SQEQELASLEQQ 92 (251)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 256
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=28.24 E-value=7.9e+02 Score=26.58 Aligned_cols=108 Identities=16% Similarity=0.251 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH-HHHH
Q 000822 1092 AIEDLTQKLTSEVQGLQTQISAIM-EENNSLNETYQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAA-EKFA 1169 (1267)
Q Consensus 1092 ~~kEl~~q~~~~~k~lk~q~ee~e-ee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~-~~~~ 1169 (1267)
.+..+.+.....+-.|+..+.... .+.+.+...+-+++++++.+...|-+.++. -.....-+++.-|+.++ +.+.
T Consensus 48 d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~---l~a~~klD~n~eK~~~r~e~~~ 124 (177)
T PF07798_consen 48 DLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINK---LRAEVKLDLNLEKGRIREEQAK 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHH
Confidence 344566666677777777665443 445666677778888887777555554322 12234445555566664 4556
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 000822 1170 LETRIKELEELLVNVETQFKEEVENVKVSAAGK 1202 (1267)
Q Consensus 1170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1202 (1267)
...+|.++...|..--+.++-+|++++..+...
T Consensus 125 ~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~ 157 (177)
T PF07798_consen 125 QELKIQELNNKIDTEIANLRTEIESLKWDTLRW 157 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888877778888888877666544
No 257
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=28.22 E-value=1.1e+03 Score=28.17 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=37.2
Q ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 326 LDLIKASESQAKEEISALDNLLADAKENLHAKVSELEDIK----LKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSK 401 (1267)
Q Consensus 326 Lk~lK~s~~~lKedkdrle~~l~eL~~~l~~ke~El~~l~----~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~ 401 (1267)
+.++..++...+.++++++..+..|+..|..|...+..-. ..+-............+.+...++......+.....
T Consensus 76 ~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~q~~~ 155 (301)
T PF06120_consen 76 IAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLEQMQS 155 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555555555555554443322211 111111112233334444444444444444444444
Q ss_pred HHHHHHHHHHHhH
Q 000822 402 EKEALEAAMADLT 414 (1267)
Q Consensus 402 ~keslEk~i~DLe 414 (1267)
+...+...+.++.
T Consensus 156 k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 156 KASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 258
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=27.79 E-value=7.9e+02 Score=26.41 Aligned_cols=13 Identities=46% Similarity=0.762 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 000822 650 ELEEQISKLEKKC 662 (1267)
Q Consensus 650 ELEeqis~LEKK~ 662 (1267)
.+...+..++.++
T Consensus 156 ~l~~~i~~l~rk~ 168 (177)
T PF13870_consen 156 ELRKEIKELERKV 168 (177)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 259
>PRK04325 hypothetical protein; Provisional
Probab=27.75 E-value=3.4e+02 Score=25.61 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000822 543 LSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRS 585 (1267)
Q Consensus 543 iskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRi 585 (1267)
+..|...+.-.+..+..++.-+..-+..|..|+.++..+..++
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl 53 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQM 53 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333334444443333333
No 260
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.39 E-value=4.7e+02 Score=26.17 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 000822 566 DYKDKITQLELILNQSNTRSSEL 588 (1267)
Q Consensus 566 elqkkIs~LEsqLk~LqsRireL 588 (1267)
.+...+..+.-.+..+..+++.+
T Consensus 69 ~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 69 DLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 33333333333333333333333
No 261
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=27.34 E-value=7.4e+02 Score=29.55 Aligned_cols=19 Identities=16% Similarity=0.372 Sum_probs=7.4
Q ss_pred HHHHHHHhhHHHHHHHHHH
Q 000822 483 LEDIIRASNEAAEEAKSQL 501 (1267)
Q Consensus 483 L~~qi~~~~~~~Ek~k~~l 501 (1267)
++.++...+.++..+...|
T Consensus 175 l~~ql~~~~~~l~~ae~~l 193 (362)
T TIGR01010 175 AENEVKEAEQRLNATKAEL 193 (362)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333343333333333
No 262
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=26.84 E-value=6.2e+02 Score=25.60 Aligned_cols=63 Identities=16% Similarity=0.206 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 000822 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANM 608 (1267)
Q Consensus 546 LqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~ 608 (1267)
+-.+...+...+..+..-+.+.+.+...|..+|+.....++-++.+.++|...-..+..|...
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~ 65 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEV 65 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666777777777777777777777777777777666655554444333
No 263
>PRK00295 hypothetical protein; Provisional
Probab=26.74 E-value=4e+02 Score=24.73 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHhHH
Q 000822 566 DYKDKITQLELILNQSNTR 584 (1267)
Q Consensus 566 elqkkIs~LEsqLk~LqsR 584 (1267)
.-+..|..|+.++..+..+
T Consensus 30 ~Qq~~I~~L~~ql~~L~~r 48 (68)
T PRK00295 30 EQQRVIERLQLQMAALIKR 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 264
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=26.33 E-value=8.1e+02 Score=30.26 Aligned_cols=49 Identities=20% Similarity=0.253 Sum_probs=38.9
Q ss_pred HHHHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000822 1067 DLQAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENN 1119 (1267)
Q Consensus 1067 el~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~ 1119 (1267)
|+.+-+.+.+-+..++.+ .+.++-|+++-.+.++-.||-.|..++|-..
T Consensus 245 e~~~~~~~LqEEr~R~er----LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 245 EYQFILEALQEERYRYER----LEEQLNDLTELHQNEIYNLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 566666666666777666 9999999999999999999999888877554
No 265
>PRK02793 phi X174 lysis protein; Provisional
Probab=25.79 E-value=3.8e+02 Score=25.17 Aligned_cols=16 Identities=13% Similarity=0.009 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 000822 566 DYKDKITQLELILNQS 581 (1267)
Q Consensus 566 elqkkIs~LEsqLk~L 581 (1267)
.-+..|..|+.++..+
T Consensus 33 ~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 33 AHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 266
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=25.62 E-value=8.1e+02 Score=25.83 Aligned_cols=87 Identities=15% Similarity=0.070 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHhHHHHHHH
Q 000822 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLVETNNQLKSKVAEL 914 (1267)
Q Consensus 835 KKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~~~~~~Lesei~eL 914 (1267)
-+...+|+-++..+.-+...+.....+| ..+...+++++...++....- -......+...+.+.++.+|..-
T Consensus 18 ~~a~~~I~~~q~r~a~a~~~~~~r~sel-------dqA~~~~~eae~k~~~~~a~~-P~~~~~~~wqlkvr~a~~dv~nk 89 (136)
T PF11570_consen 18 DQADEDIATLQERQASAEQALNGRRSEL-------DQANKKVKEAEIKQDEFFANN-PPHEYGRGWQLKVRRAQKDVQNK 89 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHCCCCTT--TTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-------HHHHHHHHHHHhcccccccCC-CccccccHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555 777777777666666554332 23333344447778888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 000822 915 QELLDSAISEKEATG 929 (1267)
Q Consensus 915 qe~Le~a~~ere~ae 929 (1267)
+..|..+...+-.+.
T Consensus 90 q~~l~AA~~~l~~~~ 104 (136)
T PF11570_consen 90 QNKLKAAQKELNAAD 104 (136)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888876665444
No 267
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=25.51 E-value=7.7e+02 Score=25.57 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000822 346 LLADAKENLHAKVSELEDIKLKL 368 (1267)
Q Consensus 346 ~l~eL~~~l~~ke~El~~l~~kl 368 (1267)
...+|+.+++..-.....+...+
T Consensus 14 q~QqLq~ql~~~~~qk~~le~qL 36 (119)
T COG1382 14 QLQQLQQQLQKVILQKQQLEAQL 36 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555544444444
No 268
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=25.42 E-value=6.1e+02 Score=24.34 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 000822 857 LLKEELDSYFIKVTSLESTNEELQRQVVEANNK 889 (1267)
Q Consensus 857 ~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~ 889 (1267)
.+...+..+...+..+....+.+..++.++...
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444444444444444444433
No 269
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.42 E-value=1.3e+03 Score=28.09 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 000822 653 EQISKLEKKCEEAEAGSKQYSDKVCELASE 682 (1267)
Q Consensus 653 eqis~LEKK~k~~eqeLae~~e~l~~Lk~E 682 (1267)
..+..++..+..+...+..|..-+..+...
T Consensus 336 ~~l~~le~~q~~l~~~l~~~~~~L~~ve~~ 365 (388)
T PF04912_consen 336 QTLSELESQQSDLQSQLKKWEELLNKVEEK 365 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554444433
No 270
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.37 E-value=2.2e+02 Score=25.72 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHH
Q 000822 98 KVKELEIELERAATALKNAEIENARLQDDVLITKEKLEE 136 (1267)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~ 136 (1267)
+|.+||.++.++...+-....++..+.+.+..+++...+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999888888888777777777766643
No 271
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=25.31 E-value=7.2e+02 Score=25.15 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Q 000822 352 ENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIA 418 (1267)
Q Consensus 352 ~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLessie 418 (1267)
.++.++.....-|..-+=+|+.....+.+.|...++.+..+..+++.+..+...+.+.+.-|...+.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777777777778889999999999999999999999999999999999999999984443
No 272
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=25.01 E-value=4.8e+02 Score=23.70 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 559 QLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 559 ele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE 601 (1267)
.+...+..+..+|.+|...++.+...+....++......+|..
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN 49 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN 49 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444444444444555555444444443
No 273
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=24.99 E-value=6.7e+02 Score=24.69 Aligned_cols=28 Identities=7% Similarity=0.118 Sum_probs=10.8
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 000822 716 DEKRKLQDTSNGYNEKLAEAENLLELLR 743 (1267)
Q Consensus 716 k~k~~LE~EieElkeqLeElE~~Le~LR 743 (1267)
..+..++..+..+..++..++..+..++
T Consensus 70 ~~~e~le~~i~~l~~~~~~l~~~~~elk 97 (105)
T cd00632 70 ERLETIELRIKRLERQEEDLQEKLKELQ 97 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 274
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=24.99 E-value=1.5e+03 Score=28.85 Aligned_cols=202 Identities=15% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHH
Q 000822 542 KLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQ 621 (1267)
Q Consensus 542 qiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell~ 621 (1267)
...+..+.+.-+..-+......++---+.-..|=+.-+.++.+.++|++..+...+++-.
T Consensus 56 ~~tkt~~d~d~lt~lle~k~~dlElaAkiGqsllk~nk~Lq~~nesLeEqv~~~~d~vvq-------------------- 115 (596)
T KOG4360|consen 56 QMTKTYNDIDFLTELLEEKRRDLELAAKIGQSLLKANKALQEDNESLEEQVDAPWDRVVQ-------------------- 115 (596)
T ss_pred hhhccccchHHHHHHHhcccchhHHHHHHHHHHHhhhhhhhhhhhhhHhhhcchHHHHHH--------------------
Q ss_pred hhhhhhhhhhhhHHHHHHH----------------------------------HHHHHHHHHHHHHHHHHHHHHH-----
Q 000822 622 TSHSKLEGTGKRVNELELL----------------------------------LEAEKYRIQELEEQISKLEKKC----- 662 (1267)
Q Consensus 622 ~~k~kLEeae~~leelEe~----------------------------------LEk~K~RlqELEeqis~LEKK~----- 662 (1267)
.+-.+....+. ++....++..++.....++-+.
T Consensus 116 --------l~hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~~llk~ 187 (596)
T KOG4360|consen 116 --------LGHELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKAMLLKT 187 (596)
T ss_pred --------hhhhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHh
Q ss_pred ------HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 000822 663 ------EEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAE 736 (1267)
Q Consensus 663 ------k~~eqeLae~~e~l~~Lk~ELE~lekE~relEt~Lee~rek~reL~eqleevek~k~~LE~EieElkeqLeElE 736 (1267)
..-.+-...+...+......+-..+.++..+.+.+...++..-.|..++.+..+.++-+-.+++++...|-..-
T Consensus 188 Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~ 267 (596)
T KOG4360|consen 188 ETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYK 267 (596)
T ss_pred hhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 000822 737 NLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKL 774 (1267)
Q Consensus 737 ~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~ 774 (1267)
+.-..+..|+..++.+-....+.+.+. ++++..-|
T Consensus 268 da~~ql~aE~~EleDkyAE~m~~~~Ea---eeELk~lr 302 (596)
T KOG4360|consen 268 DAQRQLTAELEELEDKYAECMQMLHEA---EEELKCLR 302 (596)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhc
No 275
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=24.98 E-value=7e+02 Score=24.87 Aligned_cols=26 Identities=12% Similarity=0.137 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Q 000822 563 QMNDYKDKITQLELILNQSNTRSSEL 588 (1267)
Q Consensus 563 kleelqkkIs~LEsqLk~LqsRireL 588 (1267)
++..+...|..++.++..+...+..+
T Consensus 75 r~e~ie~~i~~lek~~~~l~~~l~e~ 100 (110)
T TIGR02338 75 KKETLELRVKTLQRQEERLREQLKEL 100 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 276
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=24.92 E-value=1.5e+03 Score=28.59 Aligned_cols=180 Identities=23% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhh---hHHhHHHHHHHHHHHHhhhhhhhHHHhhHHHhH
Q 000822 912 AELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSA---TEARVKEAEIQLHEAIQRFTQRDIEANNLNEKV 988 (1267)
Q Consensus 912 ~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~---~e~~~~~~~~q~~E~~~~~~~~e~e~k~l~ekl 988 (1267)
++|+.+|++..+-.+-+.-.|..-+.-..+|.+.+.+.-..|+- -=++++.-+.++...++ .+.+=-+-.
T Consensus 298 eeLR~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~Hr-------~i~egI~dV 370 (488)
T PF06548_consen 298 EELRVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARHR-------RIMEGIEDV 370 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
Q ss_pred HHHhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHHHhhhhhhhhhhhchhhhhhhhhhHHHHHHHhhhhHH
Q 000822 989 SVLEGQIKSYEEQAREASTVAETRKFELEETLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDL 1068 (1267)
Q Consensus 989 ~~~E~~~~~~~~~~~~a~~~a~~~k~e~e~~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~l~k~E~klkel 1068 (1267)
+ ++|.-|..-..+.+ =+++|=+.|.-|-.. -|.|.+-++.-|
T Consensus 371 K----------kaAakAg~kG~~~r--------F~~slaaEiSalr~e---rEkEr~~l~~eN----------------- 412 (488)
T PF06548_consen 371 K----------KAAAKAGVKGAESR--------FINSLAAEISALRAE---REKERRFLKDEN----------------- 412 (488)
T ss_pred H----------HHHHHhccccchHH--------HHHHHHHHHHHHHHH---HHHHHHHHHHHh-----------------
Q ss_pred HHhhhHhhhhhhHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 000822 1069 QAKLSATIVEKDETVEQLHASKKAIEDLTQKLTSEVQGLQTQISAIMEENNSLNETYQNAKNELQSVISQLEAQLNEKKA 1148 (1267)
Q Consensus 1069 ~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~q~~~~~k~lk~q~ee~eee~~~~~~~~r~~q~eL~~~~~~~~~~~~~~~~ 1148 (1267)
|+|+. +++|-.+-++.-+.-|=| +-+|++=+......|-.+..|-+-+- .
T Consensus 413 ---------------k~L~~---QLrDTAEAVqAagEllvr-l~eaeea~~~a~~r~~~~eqe~ek~~-----------k 462 (488)
T PF06548_consen 413 ---------------KGLQI---QLRDTAEAVQAAGELLVR-LREAEEAASVAQERAMDAEQENEKAK-----------K 462 (488)
T ss_pred ---------------HHHHH---HHHhHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q ss_pred hhHHHHH----HHHHHHHHHHH
Q 000822 1149 TEETFKS----EIESLKAQAAE 1166 (1267)
Q Consensus 1149 ~~~~~~~----e~~~lr~~~~~ 1166 (1267)
-.|-+++ +|.+|+-.+++
T Consensus 463 qiekLK~kh~~Ei~t~kq~lae 484 (488)
T PF06548_consen 463 QIEKLKRKHKMEISTMKQYLAE 484 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
No 277
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=24.86 E-value=1.2e+03 Score=27.36 Aligned_cols=155 Identities=17% Similarity=0.236 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH----
Q 000822 706 ELTESLNAAADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQL---- 781 (1267)
Q Consensus 706 eL~eqleevek~k~~LE~EieElkeqLeElE~~Le~LR~El~l~q~k~esiE~~l~~~~~~eee~~~k~k~~~~ql---- 781 (1267)
.+.....+++.-..+.+..+..+..++..+.+.+...+.+++.+--..+ .|==+.+. ++-++.++|
T Consensus 64 ~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD-~EYPvK~v---------qIa~L~rqlq~lk 133 (258)
T PF15397_consen 64 QLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKD-HEYPVKAV---------QIANLVRQLQQLK 133 (258)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhHHHH---------HHHHHHHHHHHHH
Confidence 3444455556666666677777777777777777777777766655555 33222221 223333333
Q ss_pred HHHHHHHHHHh-hhhhhhhHhHHHhhHhhHHHHHHHHHhhhcchhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000822 782 EQQTRVLEQAT-SRNSELESLHESLMRESEMKLQDALANITSRDSEAKSFSEKLKNLEGQVKMYEEQLAEAAGKYALLKE 860 (1267)
Q Consensus 782 ~~~~~~LE~e~-~~~~e~~~~~e~~~kk~E~~Lqeale~~~~~~sEa~~l~e~LKKLE~qikele~ql~ea~rk~~~l~~ 860 (1267)
.+++.++++.. ..+.++. +|+.+++..-..+.+.-++-. +.-|+.-+-.--..+-.+++
T Consensus 134 ~~qqdEldel~e~~~~el~--------~l~~~~q~k~~~il~~~~~k~------------~~~~~~~l~~~~~~N~~m~k 193 (258)
T PF15397_consen 134 DSQQDELDELNEMRQMELA--------SLSRKIQEKKEEILSSAAEKT------------QSPMQPALLQRTLENQVMQK 193 (258)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH------------HhhchHHHHHHHHHHHHHHH
Confidence 23344554432 2233333 555555553333332111111 11122222222245566667
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 000822 861 ELDSYFIKVTSLESTNEELQRQVVEANNKA 890 (1267)
Q Consensus 861 Ele~~~~~l~~le~~~kelq~e~dE~~~~~ 890 (1267)
++..++..+..++-.+-.|..++..+....
T Consensus 194 ei~~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 194 EIVQFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 776666666666666666666666655443
No 278
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=24.43 E-value=1.5e+03 Score=28.39 Aligned_cols=140 Identities=11% Similarity=0.110 Sum_probs=38.0
Q ss_pred chHHHHHHHhcHHHHhhhhHHHHHHhccchHHHHHHHHHhhHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 000822 451 NNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSS 530 (1267)
Q Consensus 451 ~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~eLq~K~~ 530 (1267)
+..|+..++++|--...-|-+....++.-+..+-.++..+++..-... -...+.-.......|......+-.+++
T Consensus 149 ~~~Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~~s~~~~-----~~~~R~~~~~~k~~L~~~sd~Ll~kVd 223 (424)
T PF03915_consen 149 DLKEVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKSASTNAS-----GDSNRAYMESGKKKLSEESDRLLTKVD 223 (424)
T ss_dssp --------------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888887766666666555555555555555555333211111 112233334444445555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHH
Q 000822 531 DSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN-TRSSELEEELRITKE 597 (1267)
Q Consensus 531 e~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~Lq-sRireLEEele~L~E 597 (1267)
+++--|.++...+-.-..... -..+..+...+......+..+..-+.... .+-+-++.++..+-+
T Consensus 224 DLQD~VE~LRkDV~~RgvRp~--~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~~V~e 289 (424)
T PF03915_consen 224 DLQDLVEDLRKDVVQRGVRPS--PKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQKVCE 289 (424)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 555555555555444443332 22333333334444444444444444222 444555556654433
No 279
>PRK00736 hypothetical protein; Provisional
Probab=24.39 E-value=4.2e+02 Score=24.57 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 000822 558 KQLHDQMNDYKDKITQLELILNQSNTRS 585 (1267)
Q Consensus 558 eele~kleelqkkIs~LEsqLk~LqsRi 585 (1267)
..++.-+..-+..|..|+.++..+..|+
T Consensus 22 e~Ln~~v~~Qq~~i~~L~~ql~~L~~rl 49 (68)
T PRK00736 22 EELSDQLAEQWKTVEQMRKKLDALTERF 49 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 280
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=24.31 E-value=9.7e+02 Score=27.67 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000822 537 REFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEEL 592 (1267)
Q Consensus 537 ~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEel 592 (1267)
--+..+..+.+..+.+++.++......+..++..+..|..+=-.|-.+++.|..=-
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~ 137 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYN 137 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 34556677777788888888888888888888888888888777888888876644
No 281
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=24.15 E-value=4.3e+02 Score=29.99 Aligned_cols=83 Identities=24% Similarity=0.304 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhhh---hhhHHHH
Q 000822 93 LEANEKVKELEIELERAATALKNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKY---NSELNAM 169 (1267)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~~~---~~e~~~L 169 (1267)
+.++++..+--..+..-.+.-...+++|....+++.++++.+++..++++-.+....-|..|..+--.-| ..+.+.|
T Consensus 126 l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~L 205 (216)
T KOG1962|consen 126 LRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKL 205 (216)
T ss_pred HHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Q ss_pred HHHHhh
Q 000822 170 KEALQA 175 (1267)
Q Consensus 170 ~~~lq~ 175 (1267)
+++++.
T Consensus 206 q~~i~~ 211 (216)
T KOG1962|consen 206 QEQIES 211 (216)
T ss_pred HHHHhc
No 282
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=24.00 E-value=1.2e+03 Score=27.24 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=72.0
Q ss_pred hhhHHHHHHhccch-HHHHHHHHHhhHHHHHHHHHH-------hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Q 000822 467 NETGAAAATASQRN-LELEDIIRASNEAAEEAKSQL-------RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVRE 538 (1267)
Q Consensus 467 ~~he~~~~~~~qk~-~EL~~qi~~~~~~~Ek~k~~l-------~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~e 538 (1267)
...++.+..+.-+. .=|++-|.+++...++.|.++ ..|-..++.-+....++-+|+..+.....=+..++..
T Consensus 89 ~Q~e~~v~a~e~~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK~qq~Ps~~qlR~ 168 (330)
T KOG2991|consen 89 KQYEAYVQALEGKYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLKQQQQPSVAQLRS 168 (330)
T ss_pred HHHHHHHHHhcCcccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 34555555555454 788999999999999999998 4455566666777777777777766655544444332
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHhh
Q 000822 539 FS--EKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLE-----LILNQSNTRSSELEEELRITKERSAE 601 (1267)
Q Consensus 539 Le--eqiskLqsEL~elE~ELeele~kleelqkkIs~LE-----sqLk~LqsRireLEEele~L~EeLeE 601 (1267)
.. .-|. ..+..+..++.....++.+.+..++... +.=+.|=..++-|..+-..|-.+..+
T Consensus 169 ~llDPAin---l~F~rlK~ele~tk~Klee~QnelsAwkFTPdS~tGK~LMAKCR~L~qENeElG~q~s~ 235 (330)
T KOG2991|consen 169 TLLDPAIN---LFFLRLKGELEQTKDKLEEAQNELSAWKFTPDSKTGKMLMAKCRTLQQENEELGHQASE 235 (330)
T ss_pred HhhChHHH---HHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCcchHHHHHHHHHHHHHHHHHHhhhhc
Confidence 21 1121 1222333334444444444443332211 11114555666666665544444333
No 283
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=23.97 E-value=4.4e+02 Score=29.03 Aligned_cols=90 Identities=17% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHhHHH-----HH
Q 000822 1166 EKFALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQ-----TA 1240 (1267)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 1240 (1267)
....++..+..|.+.+......+.+--..+..+..+|... .+...+......|..++.+|+++|. ++ ..
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-----~eR~~~l~~l~~l~~~~~~l~~el~-~~~~~Dp~~ 136 (188)
T PF03962_consen 63 AKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-----EEREELLEELEELKKELKELKKELE-KYSENDPEK 136 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCHHH
Q ss_pred HHHhhhhhhhhHhhhcccccc
Q 000822 1241 IAEQVSDWLQHFIFLGFFTVN 1261 (1267)
Q Consensus 1241 ~~~~~~~~~~~~~~~~~~~~~ 1261 (1267)
|..-+.....-...-..||=|
T Consensus 137 i~~~~~~~~~~~~~anrwTDN 157 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDN 157 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
No 284
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=23.92 E-value=6.4e+02 Score=24.03 Aligned_cols=77 Identities=18% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000822 518 LEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQ--LHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1267)
Q Consensus 518 LE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELee--le~kleelqkkIs~LEsqLk~LqsRireLEEele~L 595 (1267)
+.--+..+..++.++..--..+...+..+...|.....-... .-.... |..++..+...+..+..++..+......+
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L 90 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKL 90 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444555555555555555555544442111 112223 66666666666666666666666655543
No 285
>PRK00846 hypothetical protein; Provisional
Probab=23.64 E-value=4.8e+02 Score=25.07 Aligned_cols=42 Identities=14% Similarity=0.104 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000822 546 LSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSE 587 (1267)
Q Consensus 546 LqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRire 587 (1267)
|...+.-.+.-+..++.-+...+..|..|..++..+..+++.
T Consensus 18 LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~ 59 (77)
T PRK00846 18 LETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 59 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333444444433333333
No 286
>PLN03188 kinesin-12 family protein; Provisional
Probab=23.53 E-value=2.3e+03 Score=30.39 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=48.2
Q ss_pred HHHHHHhHHHH------HHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHhhhhhhh-hH--HhHHHHHHHHHHHH
Q 000822 901 VETNNQLKSKV------AELQELLDSAISEKEATGQQLASHMNTVTELTEQHSRALELHSA-TE--ARVKEAEIQLHEAI 971 (1267)
Q Consensus 901 ~~~~~~Lesei------~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~~r~~~l~s~-~e--~~~~~~~~q~~E~~ 971 (1267)
.++.+=++++. ++|+.+|++..+-.+-+.-.|..-+.-.++|.+.+.+.-..|+- +| ++++.-+.++...+
T Consensus 1051 ~er~~w~e~es~wislteelr~eles~r~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~h 1130 (1320)
T PLN03188 1051 QERLRWTEAESKWISLAEELRTELDASRALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARH 1130 (1320)
T ss_pred HHHHHHHHHhhhheechHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555566655 68888888866666666666777777788899988888888875 33 23445555555555
Q ss_pred h
Q 000822 972 Q 972 (1267)
Q Consensus 972 ~ 972 (1267)
+
T Consensus 1131 r 1131 (1320)
T PLN03188 1131 R 1131 (1320)
T ss_pred H
Confidence 5
No 287
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=23.35 E-value=7.2e+02 Score=24.48 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhhHHHH
Q 000822 518 LEQQLNLVELKSSDSERE 535 (1267)
Q Consensus 518 LE~QL~eLq~K~~e~ere 535 (1267)
|..++..+..++..+..+
T Consensus 11 l~~~~~~l~~~~~~l~~~ 28 (105)
T cd00632 11 LQQQLQAYIVQRQKVEAQ 28 (105)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 288
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=23.16 E-value=1.1e+03 Score=26.62 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhh----cccchhhhHHHHHHHHhHHH
Q 000822 835 KNLEGQVKMYEEQLAEAAGKYALLKEELDSYFIKVTSLESTNEELQRQVVEANNKA----NNSSSENELLVETNNQLKSK 910 (1267)
Q Consensus 835 KKLE~qikele~ql~ea~rk~~~l~~Ele~~~~~l~~le~~~kelq~e~dE~~~~~----~~~~~e~~~l~~~~~~Lese 910 (1267)
-+|...|-.++..+..++.....++... ..+-..+-..|+++-++..+- ..++.-=..|.+.-..++..
T Consensus 35 e~LK~~i~~~E~~l~~~r~~~~~aK~~Y-------~~ai~~Rs~sQrEvn~LLqRK~sWs~~DleRFT~Lyr~dH~~e~~ 107 (207)
T PF05546_consen 35 EKLKKSIEELEDELEAARQEVREAKAAY-------DDAIQQRSSSQREVNELLQRKHSWSPADLERFTELYRNDHENEQA 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhhhhhHHH
Confidence 4666677788888888888888888888 666666677777777775542 12222223334555556667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000822 911 VAELQELLDSAISEKEATG 929 (1267)
Q Consensus 911 i~eLqe~Le~a~~ere~ae 929 (1267)
..++...+.+++..-+.+.
T Consensus 108 e~~ak~~l~~aE~~~e~~~ 126 (207)
T PF05546_consen 108 EEEAKEALEEAEEKVEEAF 126 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777766665555
No 289
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=22.65 E-value=1e+03 Score=26.60 Aligned_cols=64 Identities=16% Similarity=0.252 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 000822 532 SEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRIT 595 (1267)
Q Consensus 532 ~erei~eLeeqiskLqsEL~elE~ELeele~kleelqkkIs~LEsqLk~LqsRireLEEele~L 595 (1267)
++|.|..-..+...|+..+.-....-......-...+.....|..+....+.+++.|...+..|
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433333333333333444444444444444444444444444333
No 290
>PRK11519 tyrosine kinase; Provisional
Probab=22.59 E-value=1.7e+03 Score=29.39 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 502 RELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLS--QLSTALKEVEEEKKQLHDQMNDYKDKITQLELILN 579 (1267)
Q Consensus 502 ~~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqis--kLqsEL~elE~ELeele~kleelqkkIs~LEsqLk 579 (1267)
..+............-+++|+..+..++..+++.+..|..+-. .+..+....-..+..+..++.++......+.....
T Consensus 256 ~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~ 335 (719)
T PRK11519 256 QNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYT 335 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHhHHHHHHHHHHHHHHHHHhhHHHHhhhhhhhhHHHHHhHHhhh---hhhhhhhhhHHHHH
Q 000822 580 QSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSH---SKLEGTGKRVNELE 638 (1267)
Q Consensus 580 ~LqsRireLEEele~L~EeLeE~E~rak~~rqrs~eLeell~~~k---~kLEeae~~leelE 638 (1267)
.-.-.+..+......+..+++...++....-.....+..+.-... .-+..+..+.+++.
T Consensus 336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~lp~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 336 KEHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 291
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=22.46 E-value=6.6e+02 Score=26.88 Aligned_cols=31 Identities=0% Similarity=0.309 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 000822 511 AEQRSVELEQQLNLVELKSSDSEREVREFSE 541 (1267)
Q Consensus 511 ~Ekk~keLE~QL~eLq~K~~e~erei~eLee 541 (1267)
...++..+..++..+..++.+...+|..|..
T Consensus 18 ~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 18 PKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444444444444444444444444
No 292
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=22.34 E-value=6e+02 Score=27.95 Aligned_cols=64 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 000822 527 LKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHD--QMNDYKDKITQLELILNQSNTRSSELEE 590 (1267)
Q Consensus 527 ~K~~e~erei~eLeeqiskLqsEL~elE~ELeele~--kleelqkkIs~LEsqLk~LqsRireLEE 590 (1267)
..+.-+...|..+.++++.++.....++.+|..+.+ .+.+++..|..|.........|+..+..
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 293
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=22.33 E-value=1.4e+03 Score=30.09 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=24.1
Q ss_pred hHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 000822 503 ELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEK 542 (1267)
Q Consensus 503 ~l~~~~~~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeq 542 (1267)
.+........+...-+++|+..+..++..++..+..|..+
T Consensus 257 ~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~ 296 (726)
T PRK09841 257 NIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ 296 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666666666666666666666554
No 294
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=22.00 E-value=1e+03 Score=25.76 Aligned_cols=49 Identities=24% Similarity=0.251 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 510 AAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKK 558 (1267)
Q Consensus 510 ~~Ekk~keLE~QL~eLq~K~~e~erei~eLeeqiskLqsEL~elE~ELe 558 (1267)
.+...+..+...+.++...+...-.++..+....-..+..|..+.+...
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3445555566666666666666666666666666666666666655543
No 295
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=21.10 E-value=1.9e+03 Score=29.00 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 000822 518 LEQQLNLVEL 527 (1267)
Q Consensus 518 LE~QL~eLq~ 527 (1267)
++.|+..+..
T Consensus 316 l~~ql~~l~~ 325 (726)
T PRK09841 316 VDNQLNELTF 325 (726)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 296
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.92 E-value=6.1e+02 Score=31.97 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHhhhhhHHHHHHHhhhh
Q 000822 388 QVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELCSELEEKLRNSD 435 (1267)
Q Consensus 388 ef~eL~eELe~lr~~keslEk~i~DLessieeL~e~~eeLEeeL~~~~ 435 (1267)
.+.++..-+.........+...+.++...+..+...+..|+..|..+.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 125 DLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555555566666666666666666666666665555443
No 297
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=20.59 E-value=6e+02 Score=25.43 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 514 RSVELEQQLNLVELKSSDSEREVREF--SEKLSQLSTALKEVEEEKKQLHDQM 564 (1267)
Q Consensus 514 k~keLE~QL~eLq~K~~e~erei~eL--eeqiskLqsEL~elE~ELeele~kl 564 (1267)
....+.+.+.....+++.++..+..+ ...+..++..+.++.+.+..+...+
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33344444444444444444444444 4444444444444444444444333
No 298
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=20.44 E-value=7.5e+02 Score=24.25 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHhhhhHHHH
Q 000822 516 VELEQQLNLVELKSSDSERE 535 (1267)
Q Consensus 516 keLE~QL~eLq~K~~e~ere 535 (1267)
+.+..+++.++.+.+.+.++
T Consensus 39 r~l~~~~e~lr~~rN~~sk~ 58 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKE 58 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHH
Confidence 33333333333333333333
No 299
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=20.37 E-value=1.1e+03 Score=25.51 Aligned_cols=105 Identities=16% Similarity=0.199 Sum_probs=72.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhcccchhhhHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHH
Q 000822 869 VTSLESTNEELQRQVVEANNKANNSSSENELLV-ETNNQLKSKVAELQELLDSAISEKEATGQQLASHMNTVTELTEQHS 947 (1267)
Q Consensus 869 l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~-~~~~~Lesei~eLqe~Le~a~~ere~aee~l~~~~~~~~eL~e~~~ 947 (1267)
...++..-+.+...+.+.......-...-..-+ .....++-++.-+++.-..-..-|..++-+++....+|.......+
T Consensus 50 vD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 50 VDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHELQVRLAMLREREKQLRERRDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555556666666666554422222222223 6667777778888888888888888888888888888887777777
Q ss_pred HhhhhhhhhHHhHHHHHHHHHHHHhh
Q 000822 948 RALELHSATEARVKEAEIQLHEAIQR 973 (1267)
Q Consensus 948 r~~~l~s~~e~~~~~~~~q~~E~~~~ 973 (1267)
++.-..+.|-+++..+...++++..+
T Consensus 130 qi~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 130 QIGVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 77777777888888888888777664
No 300
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=20.26 E-value=8.3e+02 Score=23.98 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 000822 343 LDNLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTG 415 (1267)
Q Consensus 343 le~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~~~ekL~e~eaef~eL~eELe~lr~~keslEk~i~DLes 415 (1267)
+......+...+..+..++..+..++--=..+++..-.++|........+..++..++....+-...+..|..
T Consensus 8 ~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 8 MEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3344444555555555555555555544444555666666777777777777777777766666666666653
No 301
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=20.10 E-value=1.5e+03 Score=27.01 Aligned_cols=32 Identities=19% Similarity=0.383 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000822 337 KEEISALDNLLADAKENLHAKVSELEDIKLKL 368 (1267)
Q Consensus 337 Kedkdrle~~l~eL~~~l~~ke~El~~l~~kl 368 (1267)
...++.++..+...+-.+..+..+...+...|
T Consensus 14 ~~~V~~m~~~L~~~~~~L~~k~~e~e~ll~~i 45 (344)
T PF12777_consen 14 EEQVEEMQEELEEKQPELEEKQKEAEELLEEI 45 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444
Done!