Query 000822
Match_columns 1267
No_of_seqs 283 out of 332
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 17:19:54 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000822.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_591-595//hhsearch_pdb/000822hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1i84_S Smooth muscle myosin he 1.0 1 1 102.0 10.8 10 1104-1113 1153-1162(1184)
2 2fxo_A Myosin heavy chain, car 1.0 1 1 76.1 13.0 97 114-230 9-126 (129)
3 1c1g_A Tropomyosin; contractIl 1.0 1 1 72.2 42.1 282 475-756 3-284 (284)
4 3bas_A Myosin heavy chain, str 1.0 1 1 48.2 11.0 73 114-197 10-82 (89)
5 3zwh_Q Myosin-9; Ca-binding pr 1.0 1 1 44.7 0.5 33 1125-1168 1-33 (45)
6 2dfs_A Myosin-5A; myosin-V, in 1.0 1 1 41.3 13.9 21 1023-1043 923-943 (1080)
7 3na7_A HP0958; flagellar bioge 1.0 1 1 34.5 22.2 172 661-836 12-186 (256)
8 3vkg_A Dynein heavy chain, cyt 1.0 1 1 33.1 29.7 209 345-585 1899-2107(3245)
9 3o0z_A RHO-associated protein 1.0 1 1 31.6 19.4 150 445-594 1-154 (168)
10 2efr_A General control protein 1.0 1 1 31.3 21.8 152 424-596 2-153 (155)
No 1
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=1.00 E-value=1 Score=102.01 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=3.5
Q ss_pred HHHHHHHHHH
Q ss_conf 9979987877
Q 000822 1104 VQGLQTQISA 1113 (1267)
Q Consensus 1104 ~~~lk~q~~~ 1113 (1267)
+..|+.+|++
T Consensus 1153 le~L~~~Iee 1162 (1184)
T 1i84_S 1153 LEALKTELED 1162 (1184)
T ss_dssp ----------
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 2
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=1.00 E-value=1 Score=76.11 Aligned_cols=97 Identities=24% Similarity=0.296 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q ss_conf 526999882367899989999984454568878889999999984331045688999999669-------9999999999
Q 000822 114 KNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAE-------EAKRKELAEV 186 (1267)
Q Consensus 114 ~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~k~~~e~~~L~~~lq~~-------ee~~~~L~~~ 186 (1267)
-+++.+|.++++++..+++++.+.+..+.+|+..+.+|.. +++.|+.+|+++ ++++.+|+..
T Consensus 9 ~~~e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~-----------Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~ 77 (129)
T 2fxo_A 9 AEREKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQ-----------EKNDLQLQVQAEQDNLADAEERCDQLIKN 77 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0548999999999999999999989889999999999999-----------99999999997787887589999999988
Q ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCC
Q ss_conf 998--------------63412999998888999999987309877656773210487
Q 000822 187 KEA--------------FDGLSLEIEQSRSRLQELEHKLQCSVDEARKFEELHKQSGS 230 (1267)
Q Consensus 187 ke~--------------lee~~~~l~~~kkk~qe~~~~L~~~~~~~~~~eel~~ee~~ 230 (1267)
+.. .++.+..|...++|+++.|.+|+.++++ .+++
T Consensus 78 k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led---------~e~~ 126 (129)
T 2fxo_A 78 KIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDD---------LELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH
T ss_conf 999999999999989999988999998888899999999988888---------8876
No 3
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=1.00 E-value=1 Score=72.20 Aligned_cols=282 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 81023088899999826889998988855715688998998999999999987621279999999897999999999999
Q 000822 475 TASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVE 554 (1267)
Q Consensus 475 ~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~ELq~K~~e~erei~eLeekiskLksEL~elE 554 (1267)
.+++|..-|...++.....+......+..+..........+..+...+..+...+..+...+..+...+..+...+..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAE 82 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 78999999887688899999999999999998898889999999999999999999999999999999999999898779
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999799999999999999999959989999999998998752887853456625988886775665353344559
Q 000822 555 EEKKQLHDQMNDYKDKITQLELILNQSNTRSSELEEELRITKERSAEDEDRANMSHQRSIELEDLFQTSHSKLEGTGKRV 634 (1267)
Q Consensus 555 ~ELeele~kleelqkkIssLEsqLk~LqsRireLEEele~L~EeLeE~E~kak~~rqrs~eLeell~~~kskLEe~e~~l 634 (1267)
..+..+...+..+...+..+...+..+...+..+...+..+...+................+...+...+..+......+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 162 (284)
T 1c1g_A 83 ADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 162 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999889889988988999999999999888889999998887775106679999999999999888899889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999999999999999824887999999999999999985459999999999999999999999
Q 000822 635 NELELLLEAEKYRIQELEEQISKLEKKCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAA 714 (1267)
Q Consensus 635 eelEe~LEk~K~RlqELEeqis~LEKKik~~eqeLae~~e~lskLk~ELE~lekE~relEt~Le~~rek~reL~eqleev 714 (1267)
..+...+......+..+...+..+...+..+...+..+...+..+...+..+......+...+.........+...+..+
T Consensus 163 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 242 (284)
T 1c1g_A 163 EEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFA 242 (284)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998899888889989998987887999999999999999999997587788899999999999998889899889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999864799999999999999997899789999977
Q 000822 715 ADEKRKLQDTSNGYNEKLAEAENLLELLRNDLNMTQERLESI 756 (1267)
Q Consensus 715 ek~k~~LE~EieELkeqLeElE~~Le~LR~El~llq~kiesl 756 (1267)
......+...+..+...+..+...+..++.+++-....+.+|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 284 (284)
T 1c1g_A 243 ERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 988999999999999999999988999999999999974369
No 4
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=1.00 E-value=1 Score=48.19 Aligned_cols=73 Identities=19% Similarity=0.154 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 52699988236789998999998445456887888999999998433104568899999966999999999999986341
Q 000822 114 KNAEIENARLQDDVLITKEKLEESGKKCEELEIGQKKFQEQIVEAGEKYNSELNAMKEALQAEEAKRKELAEVKEAFDGL 193 (1267)
Q Consensus 114 ~~~e~e~~~~~~el~~~ke~l~~~e~~~~ele~~~~~l~~~~~e~~~k~~~e~~~L~~~lq~~ee~~~~L~~~ke~lee~ 193 (1267)
-+++++|.++++++..+++.+.+.++.+++|+.++++|.+ ++++|+.++..-++++.+|+..|..|++.
T Consensus 10 ~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~-----------ek~~L~~ql~eaEe~~~~L~~~K~eLE~~ 78 (89)
T 3bas_A 10 ARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLE-----------QKNDLFGSMKQLEDKVEELLSKNYHLENE 78 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 3369999999999999999999989899999999999999-----------99999999875799999999889999999
Q ss_pred HHHH
Q ss_conf 2999
Q 000822 194 SLEI 197 (1267)
Q Consensus 194 ~~~l 197 (1267)
..+|
T Consensus 79 l~el 82 (89)
T 3bas_A 79 VARL 82 (89)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 5
>3zwh_Q Myosin-9; Ca-binding protein-motor protein complex, S100 proteins, EF-; 1.94A {Homo sapiens} PDB: 2lnk_C
Probab=1.00 E-value=1 Score=44.74 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89889889999999999865656326778999999999998787
Q 000822 1125 YQNAKNELQSVISQLEAQLNEKKATEETFKSEIESLKAQAAEKF 1168 (1267)
Q Consensus 1125 ~r~~q~eL~~~~~~~~~~~~~~~~~~~~~~~e~~~lr~~~~~~~ 1168 (1267)
||++||||+++. +++|+++++|++||++.+.+.
T Consensus 1 ~RKlQrELeEa~-----------Erae~ae~~vnkLR~k~R~~~ 33 (45)
T 3zwh_Q 1 YRKLQRELEDAT-----------ETADAMNREVSSLKNKLRRGD 33 (45)
T ss_dssp CCSSSSHHHHHT-----------TTHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHCCCC
T ss_conf 918999989999-----------999999999999999863467
No 6
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=1.00 E-value=1 Score=41.27 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 884589899996412233552
Q 000822 1023 LKNLESTVEELQTRSGHFERE 1043 (1267)
Q Consensus 1023 ~k~LE~~i~eLq~~~~~lE~e 1043 (1267)
...||.+|.+|+.++++.+.+
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~ 943 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKE 943 (1080)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 888999999999999999999
No 7
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=1.00 E-value=1 Score=34.50 Aligned_cols=172 Identities=10% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q ss_conf 9999998248879999999999999999854599999999999999999999999999999998647999999999--99
Q 000822 661 KCEEAEAGSKQYSDKVCELASELEAFQARTSSLEVALQMANDKERELTESLNAAADEKRKLQDTSNGYNEKLAEAE--NL 738 (1267)
Q Consensus 661 Kik~~eqeLae~~e~lskLk~ELE~lekE~relEt~Le~~rek~reL~eqleevek~k~~LE~EieELkeqLeElE--~~ 738 (1267)
.+..++..+..+......+..++..+......+.+.+........++...+...+..+..+...+..++.++.... +.
T Consensus 12 ~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v~~~kE 91 (256)
T 3na7_A 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERE 91 (256)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 99999999999999998758999999999999999999999999999999999997899999999999999872589999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999789978999997799888704531357999999999999999989998410233367588755765799999998
Q 000822 739 LELLRNDLNMTQERLESIEKDLKAAGLRETDVMEKLKSAEEQLEQQTRVLEQATSRNSELESLHESLMRESEMKLQDALA 818 (1267)
Q Consensus 739 Le~LR~El~llq~kieslE~~l~~~~~~eee~~~k~k~~~~ql~~~~~~LE~e~~~~~e~~~~~e~~~kk~E~~Lqeale 818 (1267)
++++..++..+..++..++.++.....+-+........+...+......|...+....... +-..+-...+....+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~----~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEV----KNIKETQQIIFKKKE 167 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999999999999999999999999999999999999999999----999999999999999
Q ss_pred HHH-CCHHHHHHHHHHHHH
Q ss_conf 610-100575457999887
Q 000822 819 NIT-SRDSEAKSFSEKLKN 836 (1267)
Q Consensus 819 ~~~-~~~sEa~~l~e~LKK 836 (1267)
.+- ..+.+...+.+.+++
T Consensus 168 ~l~~~i~~~lL~~Yerir~ 186 (256)
T 3na7_A 168 DLVEKTEPKIYSFYERIRR 186 (256)
T ss_dssp HHHHTSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
T ss_conf 9885699999999999997
No 8
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=1.00 E-value=1 Score=33.05 Aligned_cols=209 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79999999999889779999998899997478799989998999999999999999999999999999675499856325
Q 000822 345 NLLADAKENLHAKVSELEDIKLKLQEEVNARESVEAVLKTQEAQVSNVNEELDKVSKEKEALEAAMADLTGNIARMKELC 424 (1267)
Q Consensus 345 ~~l~eL~~~l~~ke~El~~l~~kleee~~~~~~l~ekL~E~eaei~eL~eELE~lk~~keslEk~i~DLessleEL~e~~ 424 (1267)
..+.-+..-+..|..++.....++.-...........+.....++...+-.|+........+-..|..-...........
T Consensus 1899 eli~~y~~ll~~K~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v 1978 (3245)
T 3vkg_A 1899 DFINQVVLLINEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDA 1978 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999998899999999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999974356643223324456431168999987409987430388899810230888999998268899989888557
Q 000822 425 SELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLREL 504 (1267)
Q Consensus 425 eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l 504 (1267)
...+..+...+.+-..+.. +.+..+...+-. ...+.++..+...+...
T Consensus 1979 ~~~~~~~~~~~~ei~~~k~----------~~e~dL~~A~Pa----------------------~Pkr~~l~~ae~~l~~~ 2026 (3245)
T 3vkg_A 1979 RELQVQLDVRNKEIAVQKV----------KAYADLEKAEPT----------------------GPLREEVEQLENAANEL 2026 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------HHHHCC-----------------------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHCCCC----------------------CHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999----------999998646999----------------------82999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15688998998999999999987621279999999897999999999999999999997999999999999999999599
Q 000822 505 EPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNTR 584 (1267)
Q Consensus 505 ~~~~~~~Ekk~keLE~QL~ELq~K~~e~erei~eLeekiskLksEL~elE~ELeele~kleelqkkIssLEsqLk~LqsR 584 (1267)
+..+...+.....++..+..++.+.....++...+...+...+..+...+..+..+.+.-..-...+..+..++..+-..
T Consensus 2027 ~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~GD 2106 (3245)
T 3vkg_A 2027 KLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVGD 2106 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHH
T ss_conf 99999999999999999999999999999999999999999999999999999862113132999999999999725289
Q ss_pred H
Q ss_conf 8
Q 000822 585 S 585 (1267)
Q Consensus 585 i 585 (1267)
+
T Consensus 2107 ~ 2107 (3245)
T 3vkg_A 2107 V 2107 (3245)
T ss_dssp H
T ss_pred H
T ss_conf 9
No 9
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=1.00 E-value=1 Score=31.61 Aligned_cols=150 Identities=13% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 45643116899998740998743038889981023088899999826889998988855715688998998999999999
Q 000822 445 LSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRELEPRFIAAEQRSVELEQQLNL 524 (1267)
Q Consensus 445 lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~l~~~~~~~Ekk~keLE~QL~E 524 (1267)
+|-+.-....|+.-+-.+++++......++-+++-+.|+.-.+.+.-++.-.....+..|+..+...++.+..|..++..
T Consensus 1 ~~~~neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~q 80 (168)
T 3o0z_A 1 GSLANEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEA 80 (168)
T ss_dssp ---------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 96324888999999999999999867899999988999998899899997899999999998899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q ss_conf 9876212799999998979999999999999999999979999999999999999995----998999999999
Q 000822 525 VELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSN----TRSSELEEELRI 594 (1267)
Q Consensus 525 Lq~K~~e~erei~eLeekiskLksEL~elE~ELeele~kleelqkkIssLEsqLk~Lq----sRireLEEele~ 594 (1267)
...-+....--+.++.+++..+..++......+.........++..++.|+.....+. -.++.+...+..
T Consensus 81 Er~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~~eLKalQ~~~eq 154 (168)
T 3o0z_A 81 ERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLNYKLKSLQQRLEQ 154 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99888777789999999999999999999998999999999999998999989974047887779998989999
No 10
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=1.00 E-value=1 Score=31.26 Aligned_cols=152 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 59999997435664322332445643116899998740998743038889981023088899999826889998988855
Q 000822 424 CSELEEKLRNSDENFCKTDSLLSQALANNAELELKLKSLEEQHNETGAAAATASQRNLELEDIIRASNEAAEEAKSQLRE 503 (1267)
Q Consensus 424 ~eeLEeeL~~~~~e~~K~e~~lsq~~~~~~El~~~~k~lee~~~~he~~~~~~~qk~~EL~~qi~~~~~~~Ek~k~~l~~ 503 (1267)
...|+..|+.+..+--..-. |+.. ++...-..+.++..+-.|..+|++.+..+. ..+++
T Consensus 2 ~~~lE~qlkeaae~ad~Kye----------EvaR----~E~dLEraEERae~aE~k~~eLEeeL~~v~-------~nlKs 60 (155)
T 2efr_A 2 MKQLEDKVEELLSKNYHLEN----------EVAR----LKKLLERAEERAELSEGKSAELEEELKTVT-------NNLKS 60 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHCC
T ss_conf 77789999999998587789----------9998----987887899999999998999999999887-------72103
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 71568899899899999999998762127999999989799999999999999999999799999999999999999959
Q 000822 504 LEPRFIAAEQRSVELEQQLNLVELKSSDSEREVREFSEKLSQLSTALKEVEEEKKQLHDQMNDYKDKITQLELILNQSNT 583 (1267)
Q Consensus 504 l~~~~~~~Ekk~keLE~QL~ELq~K~~e~erei~eLeekiskLksEL~elE~ELeele~kleelqkkIssLEsqLk~Lqs 583 (1267)
|+..-.-+..+-..++.+|..+..++.++++....-.-.+.++...|..++..+.....+.-.+...+.+.-..+..+..
T Consensus 61 LE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~ 140 (155)
T 2efr_A 61 LEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLS 140 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 03345678998999999999999999999998999997899999899999999999999899999999999999986463
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9899999999989
Q 000822 584 RSSELEEELRITK 596 (1267)
Q Consensus 584 RireLEEele~L~ 596 (1267)
..-.|+.+++.+.
T Consensus 141 ~~~~~~~~~~~~~ 153 (155)
T 2efr_A 141 KNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 0688877998863
Done!