Query 000822
Match_columns 1267
No_of_seqs 283 out of 332
Neff 5.3
Searched_HMMs 13730
Date Tue Mar 26 17:26:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000822.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_591-595//hhsearch_scop/000822hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f23a1 a.2.1.1 (A:3-77) GreA 2.0 2.1E+02 0.015 -1.1 7.4 15 904-918 53-67 (75)
2 d1uk5a_ a.7.7.1 (A:) BAG-famil 1.9 2.3E+02 0.017 -1.4 6.9 29 1056-1084 56-84 (111)
3 d1ugoa_ a.7.7.1 (A:) BAG-famil 1.5 3.1E+02 0.022 -2.4 6.0 57 1022-1087 19-75 (99)
4 d1lrza1 a.2.7.4 (A:245-309) Me 1.4 3.3E+02 0.024 -2.6 7.1 57 1168-1243 6-62 (65)
5 d1grja1 a.2.1.1 (A:2-79) GreA 1.3 3.5E+02 0.025 -2.8 7.5 59 862-921 10-71 (78)
6 d1m7ka_ a.7.7.1 (A:) Silencer 1.3 3.6E+02 0.026 -2.9 6.7 74 1019-1107 4-77 (81)
7 d1uuja_ a.221.1.1 (A:) Lissenc 1.3 3.7E+02 0.027 -3.0 2.3 19 1058-1076 57-75 (76)
8 d1h1js_ a.140.2.1 (S:) S/mar D 1.2 3.9E+02 0.029 -3.2 2.0 28 1186-1213 11-38 (44)
9 d1r7aa1 b.71.1.1 (A:435-504) S 1.2 4.1E+02 0.03 -3.3 0.3 6 45-50 1-6 (70)
10 d1vcsa1 a.47.2.1 (A:8-96) Vesi 1.1 4.1E+02 0.03 -3.4 9.0 70 530-599 1-83 (89)
No 1
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.03 E-value=2.1e+02 Score=-1.08 Aligned_cols=15 Identities=13% Similarity=0.623 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 998699999999999
Q 000822 904 NNQLKSKVAELQELL 918 (1267)
Q Consensus 904 ~~~Lesei~eLqe~L 918 (1267)
-..++++|.+|+..|
T Consensus 53 q~~~e~rI~eLe~~L 67 (75)
T d2f23a1 53 KARIEARIDSLEDIL 67 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999987
No 2
>d1uk5a_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.88 E-value=2.3e+02 Score=-1.40 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89998984256799966576654357588
Q 000822 1056 EDLALYETKLSDLQAKLSATIVEKDETVE 1084 (1267)
Q Consensus 1056 k~i~k~E~klkel~~ql~~~~~e~~~~~K 1084 (1267)
|...+++--|--+.+.||+...+.+..+|
T Consensus 56 key~~L~E~L~~~LlkLD~Ie~~G~~~vR 84 (111)
T d1uk5a_ 56 KKYLMIEEYLTKELLALDSVDPEGRADVR 84 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf 99999999999999986674658879999
No 3
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.48 E-value=3.1e+02 Score=-2.37 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888458989999641223355210024510133389998984256799966576654357588889
Q 000822 1022 KLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLH 1087 (1267)
Q Consensus 1022 ~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~i~k~E~klkel~~ql~~~~~e~~~~~K~~~ 1087 (1267)
+|......|.+|..++..|++-+ -.+...++.--|--+.+.||+.....+..++..|
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~---------~dke~~~L~E~L~~~LlkLD~Ie~~G~~~vR~~R 75 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLS---------DDKNYKRLERILTKQLFEIDSVDTEGKGDIQQAR 75 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCT---------TSSHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999999999999999982766---------4299999999999999986672547879999999
No 4
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=1.39 E-value=3.3e+02 Score=-2.61 Aligned_cols=57 Identities=16% Similarity=0.153 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7898759999999987877778987665563112246762445665565311446799999999999698979987
Q 000822 1168 FALETRIKELEELLVNVETQFKEEVENVKVSAAGKEAELNSKLEDHAHEVKDRNALYEQVIQLQRELQIAQTAIAE 1243 (1267)
Q Consensus 1168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1243 (1267)
..|+.....|+.+|..++..+-+...+ .....-+..|++|+--.++-+.-|..-|..
T Consensus 6 ~~L~~~~~~L~~~i~k~~~~leknP~s-------------------kK~~nk~~el~~Q~~s~~~ki~Ea~~li~k 62 (65)
T d1lrza1 6 KELNEERDILNKDLNKALKDIEKRPEN-------------------KKAHNKRDNLQQQLDANEQKIEEGKRLQEE 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999999999999878895-------------------788878888999999999999999999987
No 5
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=1.33 E-value=3.5e+02 Score=-2.79 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988898864778899998999999876046302325889---99998699999999999999
Q 000822 862 LDSYFIKVTSLESTNEELQRQVVEANNKANNSSSENELLV---ETNNQLKSKVAELQELLDSA 921 (1267)
Q Consensus 862 le~~~~~l~~le~~~kelq~e~dE~~~~~~~~~~e~~~l~---~~~~~Lesei~eLqe~Le~a 921 (1267)
+..+...|..+....+-.-.+.-...... +++++|+-.- .+-..++++|.+|+..|..+
T Consensus 10 ~~~L~~EL~~L~~~~rpei~~~I~~Ar~~-GDlsENaeY~aAKe~q~~~e~RI~eLe~~L~~a 71 (78)
T d1grja1 10 AEKLREELDFLKSVRRPEIIAAIAEAREH-GDLKENAEYHAAREQQGFCEGRIKDIEAKLSNA 71 (78)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTT-CCGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999883379999999999984-886333778999999999999999999998276
No 6
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.30 E-value=3.6e+02 Score=-2.89 Aligned_cols=74 Identities=15% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 79988845898999964122335521002451013338999898425679996657665435758888975988889999
Q 000822 1019 TLLKLKNLESTVEELQTRSGHFERESGGLVETNLKLTEDLALYETKLSDLQAKLSATIVEKDETVEQLHASKKAIEDLTQ 1098 (1267)
Q Consensus 1019 ~l~~~k~LE~~i~eLq~~~~~lE~e~~~l~~~~~~~~k~i~k~E~klkel~~ql~~~~~e~~~~~K~~~~~~~~~kEl~~ 1098 (1267)
++.+|...-..|.+++.++..|.+ ...- +...+++--|--+.+.|++..+..+..++ ..|+ ..+-
T Consensus 4 ~~~~I~~i~~~v~~l~~~V~~f~g--~~~d-------ke~~~L~E~L~~~llkLD~Ie~~G~~~vR----~~RK--~~vk 68 (81)
T d1m7ka_ 4 SIKKIIHVLEKVQYLEQEVEEFVG--KKTD-------KAYWLLEEMLTKELLELDSVETGGQDSVR----QARK--EAVC 68 (81)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCS--CTTS-------HHHHHHHHHHHHHHHHHTTCCCSSCHHHH----HHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC--CCCC-------HHHHHHHHHHHHHHHHHCCCCCCCCHHHH----HHHH--HHHH
T ss_conf 889999999999999999998738--7531-------89999999999999984884568959999----9999--9999
Q ss_pred HHHHHHHHH
Q ss_conf 987889979
Q 000822 1099 KLTSEVQGL 1107 (1267)
Q Consensus 1099 q~~~~~~~l 1107 (1267)
.++.-+..|
T Consensus 69 ~vq~~l~~L 77 (81)
T d1m7ka_ 69 KIQAILEKL 77 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 7
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.26 E-value=3.7e+02 Score=-3.02 Aligned_cols=19 Identities=21% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 9989842567999665766
Q 000822 1058 LALYETKLSDLQAKLSATI 1076 (1267)
Q Consensus 1058 i~k~E~klkel~~ql~~~~ 1076 (1267)
|-++.+||-||+.++++.+
T Consensus 57 ViRLQkKImdLE~~~~~lq 75 (76)
T d1uuja_ 57 VIRLQKKVMELESKLNEAK 75 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999861
No 8
>d1h1js_ a.140.2.1 (S:) S/mar DNA-binding protein Tho1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.19 E-value=3.9e+02 Score=-3.22 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7778987665563112246762445665
Q 000822 1186 TQFKEEVENVKVSAAGKEAELNSKLEDH 1213 (1267)
Q Consensus 1186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1213 (1267)
++|+++....-..++|+-++|-..|.+|
T Consensus 11 ~eLK~~lk~rgL~~sG~Ka~Li~RL~~~ 38 (44)
T d1h1js_ 11 VQLKDLLTKRNLSVGGLKNELVQRLIKD 38 (44)
T ss_dssp HHHHHHHHHTTCCCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 9999999987789888899999999987
No 9
>d1r7aa1 b.71.1.1 (A:435-504) Sucrose phosphorylase {Bifidobacterium adolescentis [TaxId: 1680]}
Probab=1.16 E-value=4.1e+02 Score=-3.35 Aligned_cols=6 Identities=50% Similarity=0.916 Sum_probs=0.0
Q ss_pred HCCCCH
Q ss_conf 012200
Q 000822 45 ALDAEF 50 (1267)
Q Consensus 45 ~~~~~~ 50 (1267)
++||+|
T Consensus 1 AFDG~F 6 (70)
T d1r7aa1 1 AFDGTF 6 (70)
T ss_dssp GGGSEE
T ss_pred CCCCEE
T ss_conf 956526
No 10
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=1.14 E-value=4.1e+02 Score=-3.39 Aligned_cols=70 Identities=9% Similarity=0.194 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q ss_conf 12799999998979999999999-----999999999979999999999999999--------99599899999999989
Q 000822 530 SDSEREVREFSEKLSQLSTALKE-----VEEEKKQLHDQMNDYKDKITQLELILN--------QSNTRSSELEEELRITK 596 (1267)
Q Consensus 530 ~e~erei~eLeekiskLksEL~e-----lE~ELeele~kleelqkkIssLEsqLk--------~LqsRireLEEele~L~ 596 (1267)
...+.+...+...+...-..+.. ....+......+.+....|.+++.... .+.++++....+++.++
T Consensus 1 E~YE~~y~~l~a~i~~kl~~i~~~~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk 80 (89)
T d1vcsa1 1 EGYEQDFAVLTAEITSKIARVPRLPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLE 80 (89)
T ss_dssp CCSHHHHHHHHHHHHHHHHHGGGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 90889999999999999988772884578899999997689999999999999874987779999999999999999999
Q ss_pred HHH
Q ss_conf 987
Q 000822 597 ERS 599 (1267)
Q Consensus 597 EeL 599 (1267)
.++
T Consensus 81 ~el 83 (89)
T d1vcsa1 81 TDF 83 (89)
T ss_dssp HHT
T ss_pred HHH
T ss_conf 999
Done!